Query 046375
Match_columns 276
No_of_seqs 123 out of 1503
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 20:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 8.8E-50 3E-54 361.1 20.5 266 1-276 22-346 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 9.9E-46 3.4E-50 335.8 27.9 272 1-275 34-364 (364)
3 3lst_A CALO1 methyltransferase 100.0 1.6E-44 5.5E-49 325.9 26.0 261 1-276 36-348 (348)
4 3reo_A (ISO)eugenol O-methyltr 100.0 3.3E-44 1.1E-48 326.2 26.3 273 1-276 35-367 (368)
5 3i53_A O-methyltransferase; CO 100.0 2.7E-44 9.2E-49 322.2 20.9 260 1-275 19-331 (332)
6 3gwz_A MMCR; methyltransferase 100.0 4.1E-44 1.4E-48 325.7 21.9 261 1-275 52-368 (369)
7 2ip2_A Probable phenazine-spec 100.0 1.2E-42 4.2E-47 311.5 21.7 257 1-275 22-333 (334)
8 1zg3_A Isoflavanone 4'-O-methy 100.0 1.6E-42 5.3E-47 314.0 21.9 271 1-275 24-358 (358)
9 1fp2_A Isoflavone O-methyltran 100.0 3E-42 1E-46 311.4 22.2 267 1-275 30-352 (352)
10 1fp1_D Isoliquiritigenin 2'-O- 100.0 2.2E-41 7.6E-46 307.9 24.3 269 1-275 38-372 (372)
11 3dp7_A SAM-dependent methyltra 100.0 7.3E-41 2.5E-45 303.7 16.8 256 1-275 29-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 1.7E-39 5.7E-44 295.2 21.3 261 1-275 30-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 3.5E-39 1.2E-43 291.8 21.2 261 1-275 33-355 (360)
14 2r3s_A Uncharacterized protein 100.0 3E-38 1E-42 282.7 20.0 254 1-275 20-334 (335)
15 1x19_A CRTF-related protein; m 100.0 5.8E-38 2E-42 284.0 19.4 248 1-275 45-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 3.4E-37 1.2E-41 278.0 19.7 248 1-275 38-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.6 1.5E-15 5E-20 131.3 12.9 114 162-275 68-256 (261)
18 3dtn_A Putative methyltransfer 99.6 1.9E-14 6.6E-19 121.4 14.2 123 152-275 33-225 (234)
19 3dh0_A SAM dependent methyltra 99.5 5.1E-14 1.8E-18 117.4 11.3 122 152-275 27-192 (219)
20 2qm3_A Predicted methyltransfe 99.5 1.1E-13 3.8E-18 125.4 12.6 217 11-263 47-308 (373)
21 3dlc_A Putative S-adenosyl-L-m 99.5 5.2E-14 1.8E-18 116.9 9.5 117 152-272 34-211 (219)
22 1ve3_A Hypothetical protein PH 99.5 8.9E-14 3.1E-18 116.4 10.1 120 151-276 29-227 (227)
23 3pfg_A N-methyltransferase; N, 99.5 3.1E-13 1.1E-17 116.0 10.8 111 163-275 49-248 (263)
24 3ou2_A SAM-dependent methyltra 99.4 3.2E-12 1.1E-16 106.1 13.7 84 152-238 35-123 (218)
25 3g5l_A Putative S-adenosylmeth 99.4 6.5E-13 2.2E-17 113.3 9.0 110 152-264 34-216 (253)
26 1vl5_A Unknown conserved prote 99.4 8.8E-13 3E-17 113.0 9.6 111 150-264 25-190 (260)
27 3bus_A REBM, methyltransferase 99.4 2.7E-12 9.2E-17 110.6 12.5 111 151-264 50-216 (273)
28 3hnr_A Probable methyltransfer 99.4 1.2E-12 4E-17 109.2 9.6 118 153-275 36-211 (220)
29 1nkv_A Hypothetical protein YJ 99.4 2.7E-12 9.3E-17 109.5 12.0 110 152-264 26-187 (256)
30 3ujc_A Phosphoethanolamine N-m 99.4 1.7E-12 5.7E-17 111.1 10.7 111 151-264 44-206 (266)
31 1xtp_A LMAJ004091AAA; SGPP, st 99.4 7.4E-13 2.5E-17 112.7 8.1 111 152-265 83-239 (254)
32 3h2b_A SAM-dependent methyltra 99.4 1.4E-12 4.8E-17 107.5 9.4 108 165-274 42-193 (203)
33 3vc1_A Geranyl diphosphate 2-C 99.4 4.7E-12 1.6E-16 111.7 13.3 124 138-264 93-269 (312)
34 2o57_A Putative sarcosine dime 99.4 2.3E-12 7.9E-17 112.5 10.9 110 152-264 68-234 (297)
35 3ocj_A Putative exported prote 99.4 7.7E-13 2.6E-17 116.3 7.5 114 162-275 116-303 (305)
36 3f4k_A Putative methyltransfer 99.4 3.8E-12 1.3E-16 108.6 11.4 103 162-265 44-197 (257)
37 3bkw_A MLL3908 protein, S-aden 99.4 6.1E-12 2.1E-16 106.2 12.6 110 152-264 33-214 (243)
38 3mgg_A Methyltransferase; NYSG 99.3 2.5E-12 8.5E-17 111.1 9.6 103 162-264 35-198 (276)
39 3i9f_A Putative type 11 methyl 99.3 1E-12 3.5E-17 105.2 6.4 114 154-275 9-159 (170)
40 1xxl_A YCGJ protein; structura 99.3 3.8E-12 1.3E-16 107.9 10.1 109 152-264 11-174 (239)
41 3ege_A Putative methyltransfer 99.3 6.1E-12 2.1E-16 108.1 11.2 108 152-264 24-178 (261)
42 3bxo_A N,N-dimethyltransferase 99.3 6.6E-12 2.3E-16 105.7 10.7 111 163-275 39-238 (239)
43 3kkz_A Uncharacterized protein 99.3 5.5E-12 1.9E-16 108.5 10.3 103 162-265 44-197 (267)
44 3l8d_A Methyltransferase; stru 99.3 1.3E-11 4.5E-16 104.2 11.7 100 163-264 52-200 (242)
45 3g2m_A PCZA361.24; SAM-depende 99.3 8.4E-12 2.9E-16 109.3 10.3 83 151-238 72-167 (299)
46 1y8c_A S-adenosylmethionine-de 99.3 1.5E-11 5E-16 103.9 11.1 72 164-237 37-117 (246)
47 3dli_A Methyltransferase; PSI- 99.3 1.2E-11 4.1E-16 104.7 10.4 99 162-264 39-184 (240)
48 3gu3_A Methyltransferase; alph 99.3 9.3E-12 3.2E-16 108.3 9.7 79 162-240 20-107 (284)
49 3cgg_A SAM-dependent methyltra 99.3 1.4E-11 4.8E-16 100.0 10.1 111 163-275 45-194 (195)
50 4htf_A S-adenosylmethionine-de 99.3 1.1E-11 3.8E-16 107.6 9.6 108 153-265 60-233 (285)
51 3lcc_A Putative methyl chlorid 99.3 7.9E-12 2.7E-16 105.4 8.3 99 165-265 67-208 (235)
52 3ccf_A Cyclopropane-fatty-acyl 99.3 1.3E-11 4.3E-16 107.0 9.1 110 151-264 46-210 (279)
53 3jwg_A HEN1, methyltransferase 99.3 9.6E-12 3.3E-16 103.7 7.9 77 163-239 28-119 (219)
54 4fsd_A Arsenic methyltransfera 99.3 1.7E-11 5.9E-16 111.3 10.2 101 163-263 82-250 (383)
55 1kpg_A CFA synthase;, cyclopro 99.3 3.4E-11 1.2E-15 104.5 11.6 110 151-264 53-228 (287)
56 2p35_A Trans-aconitate 2-methy 99.3 1.4E-11 4.9E-16 105.0 9.0 87 152-240 23-113 (259)
57 3e8s_A Putative SAM dependent 99.3 2.4E-11 8.1E-16 101.2 10.0 118 153-275 43-226 (227)
58 3e23_A Uncharacterized protein 99.3 1.4E-11 4.7E-16 102.2 8.4 101 162-264 41-182 (211)
59 3hem_A Cyclopropane-fatty-acyl 99.2 2.7E-11 9.4E-16 106.1 10.5 84 151-238 61-153 (302)
60 3jwh_A HEN1; methyltransferase 99.2 1.4E-11 4.8E-16 102.6 7.9 99 163-261 28-189 (217)
61 3g07_A 7SK snRNA methylphospha 99.2 7.3E-12 2.5E-16 109.6 6.0 110 155-264 37-269 (292)
62 2ex4_A Adrenal gland protein A 99.2 1.5E-11 5E-16 104.3 7.6 101 164-265 79-226 (241)
63 3bkx_A SAM-dependent methyltra 99.2 1.6E-11 5.6E-16 105.8 7.5 111 152-264 33-219 (275)
64 3sm3_A SAM-dependent methyltra 99.2 3.8E-11 1.3E-15 100.6 9.5 75 163-239 29-118 (235)
65 2zfu_A Nucleomethylin, cerebra 99.2 1.1E-10 3.6E-15 97.0 11.4 109 152-275 56-190 (215)
66 2fk8_A Methoxy mycolic acid sy 99.2 7.6E-11 2.6E-15 104.0 10.9 110 151-264 79-254 (318)
67 3cc8_A Putative methyltransfer 99.2 7.9E-11 2.7E-15 98.2 10.2 109 150-264 21-185 (230)
68 2p7i_A Hypothetical protein; p 99.2 3.9E-11 1.3E-15 101.3 8.3 98 164-263 42-198 (250)
69 1pjz_A Thiopurine S-methyltran 99.2 2.1E-11 7.1E-16 101.0 6.3 100 162-264 20-176 (203)
70 3grz_A L11 mtase, ribosomal pr 99.2 6.9E-11 2.4E-15 97.5 9.0 112 163-275 59-196 (205)
71 3d2l_A SAM-dependent methyltra 99.2 1.7E-10 5.7E-15 97.3 11.5 70 164-236 33-111 (243)
72 2b3t_A Protein methyltransfera 99.2 2.9E-10 9.8E-15 98.5 13.1 112 164-275 109-275 (276)
73 1vlm_A SAM-dependent methyltra 99.2 1.3E-10 4.6E-15 96.9 9.9 93 165-264 48-188 (219)
74 3q87_B N6 adenine specific DNA 99.1 3.2E-10 1.1E-14 91.1 11.4 95 164-264 23-149 (170)
75 2qe6_A Uncharacterized protein 99.1 1.4E-10 4.9E-15 100.6 10.0 92 164-255 77-190 (274)
76 2yqz_A Hypothetical protein TT 99.1 2.1E-10 7.3E-15 97.8 10.9 77 162-240 37-122 (263)
77 2xvm_A Tellurite resistance pr 99.1 1.9E-10 6.5E-15 93.9 10.1 106 152-263 22-172 (199)
78 1fbn_A MJ fibrillarin homologu 99.1 5.8E-10 2E-14 93.9 10.8 108 162-275 72-227 (230)
79 3e05_A Precorrin-6Y C5,15-meth 99.1 7E-10 2.4E-14 91.4 10.9 102 153-256 31-160 (204)
80 3lec_A NADB-rossmann superfami 99.1 3.5E-10 1.2E-14 95.3 8.4 113 163-275 20-163 (230)
81 4hg2_A Methyltransferase type 99.0 3.4E-10 1.2E-14 97.3 8.0 76 163-240 38-117 (257)
82 3kr9_A SAM-dependent methyltra 99.0 4.4E-10 1.5E-14 94.5 8.0 113 163-275 14-157 (225)
83 3fzg_A 16S rRNA methylase; met 99.0 2.2E-10 7.6E-15 93.3 5.9 101 163-266 48-189 (200)
84 1wzn_A SAM-dependent methyltra 99.0 3.1E-09 1.1E-13 90.1 12.8 81 153-237 32-121 (252)
85 4e2x_A TCAB9; kijanose, tetron 99.0 7E-10 2.4E-14 101.5 8.7 110 151-265 96-254 (416)
86 1yb2_A Hypothetical protein TA 99.0 7.5E-10 2.6E-14 95.8 8.4 105 152-263 100-236 (275)
87 2i62_A Nicotinamide N-methyltr 99.0 3.9E-10 1.3E-14 96.3 6.5 112 163-275 55-260 (265)
88 3gnl_A Uncharacterized protein 99.0 6.8E-10 2.3E-14 94.3 7.5 113 163-275 20-163 (244)
89 2aot_A HMT, histamine N-methyl 99.0 9.3E-10 3.2E-14 95.9 8.4 98 164-261 52-218 (292)
90 4dzr_A Protein-(glutamine-N5) 99.0 5.6E-10 1.9E-14 92.0 6.0 113 163-275 29-204 (215)
91 3mq2_A 16S rRNA methyltransfer 99.0 8E-10 2.7E-14 91.9 6.9 66 162-227 25-103 (218)
92 1dus_A MJ0882; hypothetical pr 99.0 2.1E-09 7.3E-14 86.9 9.0 118 153-275 43-193 (194)
93 3ggd_A SAM-dependent methyltra 99.0 5.7E-10 1.9E-14 94.4 5.8 93 162-256 54-158 (245)
94 1ri5_A MRNA capping enzyme; me 99.0 1.3E-09 4.4E-14 94.6 8.1 71 163-234 63-145 (298)
95 2h00_A Methyltransferase 10 do 99.0 4.2E-09 1.4E-13 89.7 11.0 70 164-233 65-151 (254)
96 3g5t_A Trans-aconitate 3-methy 98.9 1.1E-09 3.6E-14 95.8 7.3 91 163-256 35-144 (299)
97 3mb5_A SAM-dependent methyltra 98.9 1.3E-09 4.4E-14 92.9 7.5 105 152-263 83-221 (255)
98 3ofk_A Nodulation protein S; N 98.9 8.8E-10 3E-14 91.4 5.4 75 162-238 49-130 (216)
99 3hm2_A Precorrin-6Y C5,15-meth 98.9 2.7E-09 9.3E-14 85.4 7.6 105 154-261 17-150 (178)
100 3orh_A Guanidinoacetate N-meth 98.9 4.1E-10 1.4E-14 95.4 2.9 98 163-261 59-207 (236)
101 2gb4_A Thiopurine S-methyltran 98.9 9.2E-10 3.1E-14 94.3 5.0 98 163-263 67-226 (252)
102 3m70_A Tellurite resistance pr 98.9 1.4E-09 4.7E-14 94.3 6.0 105 152-262 110-258 (286)
103 2a14_A Indolethylamine N-methy 98.9 1.4E-09 4.8E-14 93.5 5.3 112 163-275 54-259 (263)
104 1jsx_A Glucose-inhibited divis 98.9 3.4E-09 1.1E-13 87.2 7.3 108 165-275 66-204 (207)
105 1yzh_A TRNA (guanine-N(7)-)-me 98.9 8.7E-09 3E-13 85.5 9.5 98 164-262 41-180 (214)
106 2ipx_A RRNA 2'-O-methyltransfe 98.9 1.3E-08 4.4E-13 85.6 10.3 111 162-275 75-231 (233)
107 1af7_A Chemotaxis receptor met 98.9 1.2E-09 4.2E-14 94.6 4.1 95 164-258 105-249 (274)
108 2nxc_A L11 mtase, ribosomal pr 98.8 1.6E-09 5.4E-14 92.8 4.3 110 163-275 119-254 (254)
109 1xdz_A Methyltransferase GIDB; 98.8 6.4E-09 2.2E-13 88.0 8.1 110 162-275 68-218 (240)
110 2kw5_A SLR1183 protein; struct 98.8 1E-08 3.4E-13 84.0 8.9 91 167-263 32-170 (202)
111 3iv6_A Putative Zn-dependent a 98.8 3.3E-09 1.1E-13 91.2 6.1 103 151-260 34-147 (261)
112 1nt2_A Fibrillarin-like PRE-rR 98.8 3E-08 1E-12 82.4 11.4 112 162-275 55-209 (210)
113 1l3i_A Precorrin-6Y methyltran 98.8 4.4E-09 1.5E-13 84.9 6.2 102 154-259 25-155 (192)
114 3lpm_A Putative methyltransfer 98.8 1.9E-08 6.4E-13 86.1 10.4 113 162-275 46-218 (259)
115 3m33_A Uncharacterized protein 98.8 1E-08 3.5E-13 85.9 8.4 96 163-263 47-166 (226)
116 3bwc_A Spermidine synthase; SA 98.8 1.2E-08 4.1E-13 89.7 8.9 113 163-275 94-257 (304)
117 2p8j_A S-adenosylmethionine-de 98.8 3.6E-09 1.2E-13 87.1 5.2 100 163-263 22-130 (209)
118 2gs9_A Hypothetical protein TT 98.8 1.6E-08 5.6E-13 83.3 9.0 72 164-240 36-113 (211)
119 3njr_A Precorrin-6Y methylase; 98.8 1.7E-08 5.7E-13 83.5 8.8 100 154-261 47-177 (204)
120 2pwy_A TRNA (adenine-N(1)-)-me 98.8 1.8E-08 6.1E-13 85.7 9.1 105 152-263 86-223 (258)
121 3giw_A Protein of unknown func 98.8 2.5E-08 8.7E-13 86.0 10.0 76 164-239 78-177 (277)
122 4df3_A Fibrillarin-like rRNA/T 98.8 2.5E-08 8.4E-13 84.2 9.5 112 162-274 75-230 (233)
123 2yxd_A Probable cobalt-precorr 98.8 9.9E-09 3.4E-13 82.2 6.8 103 154-261 27-154 (183)
124 3g89_A Ribosomal RNA small sub 98.8 8.3E-09 2.9E-13 88.1 6.7 112 163-275 79-228 (249)
125 2g72_A Phenylethanolamine N-me 98.8 3.6E-09 1.2E-13 92.0 4.1 100 164-264 71-256 (289)
126 3lcv_B Sisomicin-gentamicin re 98.8 4E-09 1.4E-13 89.9 4.1 103 163-266 131-273 (281)
127 1o54_A SAM-dependent O-methylt 98.8 2.2E-08 7.6E-13 86.5 8.8 105 152-263 102-238 (277)
128 3evz_A Methyltransferase; NYSG 98.8 5.6E-08 1.9E-12 81.2 10.9 104 162-266 53-208 (230)
129 3thr_A Glycine N-methyltransfe 98.7 2.6E-09 9E-14 92.7 2.5 91 163-255 56-169 (293)
130 1jg1_A PIMT;, protein-L-isoasp 98.7 2E-08 6.8E-13 84.6 7.8 100 151-261 80-189 (235)
131 2yxe_A Protein-L-isoaspartate 98.7 2.4E-08 8.1E-13 82.7 8.1 96 153-258 68-174 (215)
132 3uwp_A Histone-lysine N-methyl 98.7 1.5E-08 5.1E-13 92.0 7.2 81 151-233 162-263 (438)
133 3htx_A HEN1; HEN1, small RNA m 98.7 8.2E-09 2.8E-13 100.5 5.7 91 163-253 720-827 (950)
134 2ozv_A Hypothetical protein AT 98.7 7.2E-08 2.5E-12 82.7 11.1 68 162-229 34-122 (260)
135 3lbf_A Protein-L-isoaspartate 98.7 3E-08 1E-12 81.7 8.3 95 154-260 69-173 (210)
136 1g8a_A Fibrillarin-like PRE-rR 98.7 9.2E-08 3.1E-12 79.9 11.4 111 162-275 71-226 (227)
137 3p2e_A 16S rRNA methylase; met 98.7 3E-08 1E-12 83.3 8.2 56 163-218 23-89 (225)
138 1zx0_A Guanidinoacetate N-meth 98.7 8E-09 2.7E-13 87.0 4.5 68 163-231 59-138 (236)
139 3b3j_A Histone-arginine methyl 98.7 9.6E-09 3.3E-13 95.8 5.2 87 151-240 147-242 (480)
140 3eey_A Putative rRNA methylase 98.7 3E-08 1E-12 80.9 7.6 71 162-232 20-103 (197)
141 3id6_C Fibrillarin-like rRNA/T 98.7 1.5E-07 5.1E-12 79.4 11.9 111 162-275 74-230 (232)
142 2pxx_A Uncharacterized protein 98.7 8.2E-09 2.8E-13 85.0 4.1 73 163-236 41-121 (215)
143 2fca_A TRNA (guanine-N(7)-)-me 98.7 3.9E-08 1.3E-12 81.7 8.2 67 164-230 38-116 (213)
144 3bgv_A MRNA CAP guanine-N7 met 98.7 1E-08 3.5E-13 90.1 4.8 95 137-235 10-127 (313)
145 2y1w_A Histone-arginine methyl 98.7 1.8E-08 6.2E-13 90.2 6.2 86 152-240 40-134 (348)
146 4dcm_A Ribosomal RNA large sub 98.7 3.7E-08 1.3E-12 89.1 8.2 80 153-234 213-304 (375)
147 1nv8_A HEMK protein; class I a 98.7 1.8E-08 6.2E-13 87.7 5.9 65 164-229 123-199 (284)
148 3gdh_A Trimethylguanosine synt 98.7 3.6E-08 1.2E-12 83.1 7.6 101 164-266 78-221 (241)
149 1vbf_A 231AA long hypothetical 98.7 5.4E-08 1.8E-12 81.4 8.5 92 152-255 60-159 (231)
150 2pjd_A Ribosomal RNA small sub 98.7 8.4E-09 2.9E-13 92.1 3.3 81 152-234 186-273 (343)
151 1ne2_A Hypothetical protein TA 98.7 5.6E-08 1.9E-12 79.6 7.8 97 162-261 49-167 (200)
152 3fpf_A Mtnas, putative unchara 98.7 3.7E-08 1.3E-12 85.9 7.0 70 162-231 120-197 (298)
153 3dxy_A TRNA (guanine-N(7)-)-me 98.6 3.2E-08 1.1E-12 82.7 6.0 68 164-231 34-114 (218)
154 3mti_A RRNA methylase; SAM-dep 98.6 7.5E-08 2.6E-12 77.7 7.8 66 162-229 20-96 (185)
155 3frh_A 16S rRNA methylase; met 98.6 6.7E-08 2.3E-12 81.5 7.3 75 163-240 104-186 (253)
156 2frn_A Hypothetical protein PH 98.6 2.4E-07 8.3E-12 80.2 11.0 94 163-260 124-253 (278)
157 2b25_A Hypothetical protein; s 98.6 6.9E-08 2.4E-12 85.8 7.5 76 153-230 96-195 (336)
158 3q7e_A Protein arginine N-meth 98.6 3.6E-08 1.2E-12 88.3 5.7 73 163-236 65-147 (349)
159 3tm4_A TRNA (guanine N2-)-meth 98.6 1.2E-07 4E-12 85.7 8.7 113 163-275 216-366 (373)
160 3tfw_A Putative O-methyltransf 98.6 6.2E-08 2.1E-12 82.4 6.1 69 162-230 61-144 (248)
161 2fyt_A Protein arginine N-meth 98.6 1.1E-07 3.6E-12 84.9 7.7 79 153-234 55-143 (340)
162 1dl5_A Protein-L-isoaspartate 98.5 1.6E-07 5.5E-12 82.8 8.3 94 153-256 66-170 (317)
163 1g6q_1 HnRNP arginine N-methyl 98.5 8.3E-08 2.8E-12 85.1 6.4 71 164-235 38-118 (328)
164 2vdw_A Vaccinia virus capping 98.5 1.3E-07 4.5E-12 82.9 7.6 92 163-255 47-163 (302)
165 3r0q_C Probable protein argini 98.5 9.2E-08 3.2E-12 86.5 6.7 93 162-255 61-163 (376)
166 4azs_A Methyltransferase WBDD; 98.5 1.3E-08 4.3E-13 97.0 0.5 76 163-240 65-152 (569)
167 1o9g_A RRNA methyltransferase; 98.5 1.1E-07 3.7E-12 80.8 6.1 97 163-259 50-212 (250)
168 1wy7_A Hypothetical protein PH 98.5 4.5E-07 1.5E-11 74.4 9.6 99 162-262 47-173 (207)
169 3hp7_A Hemolysin, putative; st 98.5 2.1E-07 7.1E-12 81.1 7.9 110 152-264 74-232 (291)
170 1zq9_A Probable dimethyladenos 98.5 1.7E-07 5.9E-12 81.5 7.3 75 151-229 17-100 (285)
171 3ntv_A MW1564 protein; rossman 98.5 6.5E-08 2.2E-12 81.4 4.5 68 163-230 70-150 (232)
172 3tma_A Methyltransferase; thum 98.5 5E-07 1.7E-11 80.8 10.4 121 151-274 192-352 (354)
173 1r18_A Protein-L-isoaspartate( 98.5 1.7E-07 6E-12 78.3 6.9 92 162-261 82-194 (227)
174 2plw_A Ribosomal RNA methyltra 98.5 3.8E-07 1.3E-11 74.4 8.5 77 154-235 13-119 (201)
175 3gru_A Dimethyladenosine trans 98.5 2.9E-07 1E-11 80.4 7.8 75 151-229 39-121 (295)
176 3u81_A Catechol O-methyltransf 98.5 8.2E-08 2.8E-12 80.0 3.8 75 163-237 57-149 (221)
177 3gjy_A Spermidine synthase; AP 98.5 2E-07 7E-12 82.0 6.5 70 165-234 90-171 (317)
178 1qam_A ERMC' methyltransferase 98.5 3.1E-07 1.1E-11 78.0 7.3 77 151-231 19-102 (244)
179 1iy9_A Spermidine synthase; ro 98.4 6.5E-07 2.2E-11 77.4 9.0 70 164-233 75-159 (275)
180 2esr_A Methyltransferase; stru 98.4 1.4E-07 4.8E-12 75.5 4.3 70 163-233 30-111 (177)
181 2avn_A Ubiquinone/menaquinone 98.4 9.3E-08 3.2E-12 81.6 3.3 70 164-236 54-128 (260)
182 3ckk_A TRNA (guanine-N(7)-)-me 98.4 4.3E-07 1.5E-11 76.7 7.2 68 163-230 45-131 (235)
183 2bm8_A Cephalosporin hydroxyla 98.4 4.2E-07 1.4E-11 76.8 7.2 68 164-231 81-161 (236)
184 2pbf_A Protein-L-isoaspartate 98.4 7.7E-07 2.6E-11 74.1 8.8 94 162-263 78-195 (227)
185 1m6y_A S-adenosyl-methyltransf 98.4 3E-07 1E-11 80.6 6.3 76 151-228 15-104 (301)
186 1i9g_A Hypothetical protein RV 98.4 8E-07 2.8E-11 76.4 8.9 75 152-228 89-177 (280)
187 1p91_A Ribosomal RNA large sub 98.4 3E-07 1E-11 78.7 6.1 71 163-233 84-159 (269)
188 1ej0_A FTSJ; methyltransferase 98.4 7.4E-07 2.5E-11 70.4 7.9 72 163-238 21-104 (180)
189 3p9n_A Possible methyltransfer 98.4 3E-07 1E-11 74.5 5.7 97 163-261 43-153 (189)
190 1u2z_A Histone-lysine N-methyl 98.4 5.4E-07 1.9E-11 82.7 7.6 99 152-255 232-353 (433)
191 2fhp_A Methylase, putative; al 98.4 3E-07 1E-11 73.9 5.1 70 163-233 43-127 (187)
192 2h1r_A Dimethyladenosine trans 98.4 3E-07 1E-11 80.5 5.5 82 151-237 31-120 (299)
193 2gpy_A O-methyltransferase; st 98.4 5.1E-07 1.7E-11 75.7 6.5 72 163-234 53-138 (233)
194 3fut_A Dimethyladenosine trans 98.3 5.7E-07 1.9E-11 77.6 6.4 78 152-235 37-122 (271)
195 3dr5_A Putative O-methyltransf 98.3 4.3E-07 1.5E-11 76.0 5.4 67 166-232 58-139 (221)
196 4hc4_A Protein arginine N-meth 98.3 1.2E-06 4.2E-11 78.9 8.5 67 164-231 83-158 (376)
197 3duw_A OMT, O-methyltransferas 98.3 1.8E-07 6E-12 77.9 2.8 69 163-231 57-142 (223)
198 1i1n_A Protein-L-isoaspartate 98.3 6.9E-07 2.4E-11 74.4 6.3 90 162-259 75-180 (226)
199 1ws6_A Methyltransferase; stru 98.3 1.6E-07 5.6E-12 74.3 2.4 68 164-233 41-121 (171)
200 1ixk_A Methyltransferase; open 98.3 6.6E-07 2.3E-11 78.9 6.4 72 155-228 111-193 (315)
201 2vdv_E TRNA (guanine-N(7)-)-me 98.3 5.2E-07 1.8E-11 76.4 5.5 66 163-228 48-134 (246)
202 3adn_A Spermidine synthase; am 98.3 4.9E-07 1.7E-11 79.0 5.3 69 163-231 82-166 (294)
203 3dmg_A Probable ribosomal RNA 98.3 7.3E-07 2.5E-11 80.7 6.6 69 164-234 233-310 (381)
204 3ftd_A Dimethyladenosine trans 98.3 1.1E-06 3.9E-11 74.8 7.4 82 151-235 20-107 (249)
205 3tr6_A O-methyltransferase; ce 98.3 3.6E-07 1.2E-11 76.0 4.1 67 164-230 64-148 (225)
206 2yvl_A TRMI protein, hypotheti 98.3 3E-06 1E-10 71.3 9.6 72 153-228 82-164 (248)
207 3r3h_A O-methyltransferase, SA 98.3 3.5E-07 1.2E-11 77.6 3.3 68 164-231 60-145 (242)
208 3opn_A Putative hemolysin; str 98.3 2.6E-06 8.9E-11 71.8 8.3 51 153-205 27-78 (232)
209 3c3p_A Methyltransferase; NP_9 98.2 6.1E-07 2.1E-11 74.0 4.2 66 164-229 56-133 (210)
210 2ift_A Putative methylase HI07 98.2 5.9E-07 2E-11 73.8 4.1 69 164-233 53-136 (201)
211 3uzu_A Ribosomal RNA small sub 98.2 5E-07 1.7E-11 78.3 3.8 68 152-221 32-105 (279)
212 2fpo_A Methylase YHHF; structu 98.2 8E-07 2.7E-11 73.1 4.7 69 164-233 54-133 (202)
213 3a27_A TYW2, uncharacterized p 98.2 1.2E-06 4.2E-11 75.5 6.1 70 162-231 117-195 (272)
214 2hnk_A SAM-dependent O-methylt 98.2 3.5E-07 1.2E-11 77.1 2.3 71 163-233 59-158 (239)
215 2ld4_A Anamorsin; methyltransf 98.2 1.1E-06 3.6E-11 70.4 4.9 79 162-256 10-128 (176)
216 3tqs_A Ribosomal RNA small sub 98.2 1E-06 3.5E-11 75.4 5.0 66 151-220 18-89 (255)
217 3bzb_A Uncharacterized protein 98.2 2.4E-06 8.1E-11 74.0 7.1 101 162-263 77-236 (281)
218 1uwv_A 23S rRNA (uracil-5-)-me 98.2 4.7E-06 1.6E-10 76.6 9.4 107 153-264 277-414 (433)
219 1mjf_A Spermidine synthase; sp 98.2 3.9E-06 1.3E-10 72.7 8.2 69 163-232 74-162 (281)
220 2wa2_A Non-structural protein 98.2 2.8E-06 9.7E-11 73.4 7.3 90 162-255 80-185 (276)
221 2ih2_A Modification methylase 98.2 3.5E-06 1.2E-10 76.7 7.9 72 153-229 30-105 (421)
222 3dou_A Ribosomal RNA large sub 98.2 4E-06 1.4E-10 68.4 7.4 72 152-230 14-99 (191)
223 1sui_A Caffeoyl-COA O-methyltr 98.2 1.1E-06 3.7E-11 74.7 4.1 68 163-230 78-164 (247)
224 1yub_A Ermam, rRNA methyltrans 98.1 1.8E-06 6.2E-11 73.1 5.0 67 151-221 18-90 (245)
225 2pt6_A Spermidine synthase; tr 98.1 1.4E-06 4.6E-11 77.1 4.3 68 163-230 115-197 (321)
226 3k0b_A Predicted N6-adenine-sp 98.1 3.1E-06 1.1E-10 76.8 6.8 77 151-229 190-314 (393)
227 1xj5_A Spermidine synthase 1; 98.1 1.6E-06 5.3E-11 77.1 4.6 69 163-231 119-203 (334)
228 3ldu_A Putative methylase; str 98.1 2.9E-06 9.8E-11 76.9 6.4 77 151-229 184-308 (385)
229 1inl_A Spermidine synthase; be 98.1 1.7E-06 5.8E-11 75.6 4.7 66 164-229 90-170 (296)
230 2oxt_A Nucleoside-2'-O-methylt 98.1 4.1E-06 1.4E-10 72.0 7.0 90 162-255 72-177 (265)
231 2avd_A Catechol-O-methyltransf 98.1 1E-06 3.5E-11 73.4 3.1 68 163-230 68-153 (229)
232 2o07_A Spermidine synthase; st 98.1 1.9E-06 6.5E-11 75.6 4.9 70 163-232 94-178 (304)
233 3c3y_A Pfomt, O-methyltransfer 98.1 1.9E-06 6.4E-11 72.7 4.6 67 163-229 69-154 (237)
234 2cmg_A Spermidine synthase; tr 98.1 4.4E-06 1.5E-10 71.7 6.9 65 163-229 71-146 (262)
235 2i7c_A Spermidine synthase; tr 98.1 2E-06 6.9E-11 74.6 4.8 70 163-232 77-161 (283)
236 1qyr_A KSGA, high level kasuga 98.1 1.5E-06 5E-11 74.3 3.8 80 151-234 10-101 (252)
237 2nyu_A Putative ribosomal RNA 98.1 6.4E-06 2.2E-10 66.6 7.1 68 162-233 20-108 (196)
238 1uir_A Polyamine aminopropyltr 98.1 2.2E-06 7.5E-11 75.5 4.5 72 163-234 76-163 (314)
239 3ldg_A Putative uncharacterize 98.1 5.8E-06 2E-10 74.8 7.1 77 151-229 183-307 (384)
240 3sso_A Methyltransferase; macr 98.1 2.8E-06 9.5E-11 76.9 4.9 70 164-237 216-302 (419)
241 3cbg_A O-methyltransferase; cy 98.1 1.4E-06 4.7E-11 73.2 2.5 68 164-231 72-157 (232)
242 2b2c_A Spermidine synthase; be 98.0 3.5E-06 1.2E-10 74.2 4.3 69 163-231 107-190 (314)
243 2p41_A Type II methyltransfera 98.0 8.4E-06 2.9E-10 71.5 5.9 69 162-233 80-159 (305)
244 3ajd_A Putative methyltransfer 98.0 3.7E-06 1.3E-10 72.5 3.5 68 162-229 81-163 (274)
245 2f8l_A Hypothetical protein LM 97.9 6.4E-06 2.2E-10 73.3 4.9 73 164-236 130-215 (344)
246 3k6r_A Putative transferase PH 97.9 1E-05 3.4E-10 70.0 5.4 97 163-260 124-253 (278)
247 2yxl_A PH0851 protein, 450AA l 97.9 1.9E-05 6.5E-10 72.9 7.3 73 154-228 251-336 (450)
248 2r6z_A UPF0341 protein in RSP 97.8 6.7E-06 2.3E-10 70.4 2.2 71 162-234 81-173 (258)
249 3m6w_A RRNA methylase; rRNA me 97.8 1.7E-05 5.9E-10 73.3 4.6 66 162-228 99-176 (464)
250 3m4x_A NOL1/NOP2/SUN family pr 97.7 1.6E-05 5.5E-10 73.4 3.8 72 155-228 98-181 (456)
251 2frx_A Hypothetical protein YE 97.7 5.4E-05 1.9E-09 70.4 7.4 65 164-228 117-193 (479)
252 2yx1_A Hypothetical protein MJ 97.7 3.1E-05 1.1E-09 68.7 5.5 64 163-229 194-265 (336)
253 4gqb_A Protein arginine N-meth 97.7 4.4E-05 1.5E-09 73.0 6.7 98 124-228 322-434 (637)
254 2igt_A SAM dependent methyltra 97.7 2.4E-05 8.1E-10 69.4 4.4 63 164-228 153-231 (332)
255 2jjq_A Uncharacterized RNA met 97.7 6.5E-05 2.2E-09 68.8 7.1 63 164-229 290-360 (425)
256 1wg8_A Predicted S-adenosylmet 97.7 8.5E-05 2.9E-09 63.9 7.0 86 151-240 11-109 (285)
257 3o4f_A Spermidine synthase; am 97.6 0.00011 3.6E-09 63.9 6.9 66 163-228 82-163 (294)
258 2qfm_A Spermine synthase; sper 97.6 4.9E-05 1.7E-09 67.8 4.9 66 163-229 187-274 (364)
259 2xyq_A Putative 2'-O-methyl tr 97.6 9.7E-05 3.3E-09 64.2 6.6 93 162-262 61-195 (290)
260 1sqg_A SUN protein, FMU protei 97.6 8.5E-05 2.9E-09 68.1 6.4 72 155-228 239-321 (429)
261 2oyr_A UPF0341 protein YHIQ; a 97.6 3.7E-05 1.2E-09 65.7 3.7 71 162-234 84-176 (258)
262 2heo_A Z-DNA binding protein 1 97.6 2.6E-05 8.9E-10 52.4 2.2 55 9-72 12-66 (67)
263 2b78_A Hypothetical protein SM 97.5 3.4E-05 1.2E-09 69.8 2.8 65 163-228 211-291 (385)
264 2k4m_A TR8_protein, UPF0146 pr 97.5 8.8E-05 3E-09 57.4 4.3 58 163-230 34-97 (153)
265 3v97_A Ribosomal RNA large sub 97.5 0.00012 4E-09 71.3 6.2 77 151-229 179-310 (703)
266 2okc_A Type I restriction enzy 97.5 7.7E-05 2.6E-09 68.7 4.7 79 153-233 162-264 (445)
267 3ll7_A Putative methyltransfer 97.5 6.3E-05 2.1E-09 68.4 3.8 98 164-263 93-211 (410)
268 2b9e_A NOL1/NOP2/SUN domain fa 97.5 0.00023 8E-09 62.4 7.3 67 162-228 100-180 (309)
269 4dmg_A Putative uncharacterize 97.5 0.00012 4E-09 66.5 5.5 64 164-229 214-287 (393)
270 2as0_A Hypothetical protein PH 97.4 4.8E-05 1.6E-09 68.9 2.3 65 164-229 217-296 (396)
271 3bt7_A TRNA (uracil-5-)-methyl 97.4 0.0001 3.5E-09 66.2 4.2 52 165-218 214-272 (369)
272 3c0k_A UPF0064 protein YCCW; P 97.4 7E-05 2.4E-09 67.9 2.7 65 164-229 220-300 (396)
273 3b73_A PHIH1 repressor-like pr 97.3 9.2E-05 3.2E-09 54.8 2.6 62 8-79 14-78 (111)
274 1wxx_A TT1595, hypothetical pr 97.3 6.4E-05 2.2E-09 67.8 2.0 63 164-228 209-285 (382)
275 3b5i_A S-adenosyl-L-methionine 97.3 0.00069 2.4E-08 60.8 8.5 74 164-237 52-165 (374)
276 1y0u_A Arsenical resistance op 97.3 0.00015 5.1E-09 52.0 3.2 56 8-76 32-87 (96)
277 1xmk_A Double-stranded RNA-spe 97.3 0.00013 4.6E-09 50.4 2.8 61 8-76 12-73 (79)
278 4auk_A Ribosomal RNA large sub 97.2 0.00035 1.2E-08 62.4 5.8 69 162-232 209-280 (375)
279 3mq0_A Transcriptional repress 97.2 0.00017 5.8E-09 62.2 3.5 57 10-75 33-89 (275)
280 3tka_A Ribosomal RNA small sub 97.2 0.0011 3.9E-08 58.3 8.6 89 150-240 45-148 (347)
281 3ua3_A Protein arginine N-meth 97.2 0.0004 1.4E-08 66.8 6.0 100 124-231 377-504 (745)
282 3v97_A Ribosomal RNA large sub 97.2 0.0003 1E-08 68.5 5.2 65 164-229 539-616 (703)
283 2dul_A N(2),N(2)-dimethylguano 97.2 0.00022 7.4E-09 64.3 3.8 65 164-228 47-137 (378)
284 1qbj_A Protein (double-strande 97.1 0.00042 1.4E-08 48.2 3.7 63 7-76 10-74 (81)
285 1qgp_A Protein (double strande 97.1 0.00034 1.2E-08 48.2 3.0 59 7-73 14-75 (77)
286 3pqk_A Biofilm growth-associat 97.0 0.00065 2.2E-08 49.1 4.5 59 7-73 23-81 (102)
287 3r4k_A Transcriptional regulat 96.9 0.00028 9.7E-09 60.2 1.9 58 10-75 9-66 (260)
288 3jth_A Transcription activator 96.9 0.00051 1.7E-08 49.3 2.7 59 7-73 23-81 (98)
289 3axs_A Probable N(2),N(2)-dime 96.9 0.00034 1.2E-08 63.3 2.1 66 164-229 52-132 (392)
290 2efj_A 3,7-dimethylxanthine me 96.8 0.0014 4.8E-08 59.0 5.7 74 165-238 53-165 (384)
291 2xrn_A HTH-type transcriptiona 96.8 0.00056 1.9E-08 57.7 2.9 58 10-75 9-66 (241)
292 2qy6_A UPF0209 protein YFCK; s 96.8 0.0012 3.9E-08 56.3 4.9 112 164-275 60-246 (257)
293 2htj_A P fimbrial regulatory p 96.8 0.00099 3.4E-08 46.1 3.7 46 10-60 3-48 (81)
294 1mkm_A ICLR transcriptional re 96.8 0.0008 2.7E-08 56.9 3.8 56 10-74 11-66 (249)
295 1u2w_A CADC repressor, cadmium 96.7 0.0007 2.4E-08 50.8 2.8 60 8-74 43-102 (122)
296 2g7u_A Transcriptional regulat 96.7 0.00072 2.5E-08 57.5 3.1 60 10-79 17-76 (257)
297 3p8z_A Mtase, non-structural p 96.7 0.0038 1.3E-07 52.1 6.9 78 151-230 67-152 (267)
298 2oqg_A Possible transcriptiona 96.7 0.00071 2.4E-08 49.7 2.3 60 8-75 22-81 (114)
299 1oyi_A Double-stranded RNA-bin 96.6 0.0011 3.9E-08 45.9 2.9 60 7-75 17-76 (82)
300 2jt1_A PEFI protein; solution 96.6 0.00087 3E-08 46.1 2.3 46 11-60 8-58 (77)
301 2o0y_A Transcriptional regulat 96.6 0.00094 3.2E-08 56.9 3.0 56 10-74 26-81 (260)
302 3cuo_A Uncharacterized HTH-typ 96.6 0.00078 2.7E-08 48.1 2.0 61 7-74 24-84 (99)
303 2ia2_A Putative transcriptiona 96.6 0.0007 2.4E-08 57.9 1.9 56 10-75 24-79 (265)
304 2ar0_A M.ecoki, type I restric 96.6 0.0019 6.5E-08 60.9 5.0 75 153-229 160-268 (541)
305 1m6e_X S-adenosyl-L-methionnin 96.5 0.0026 8.8E-08 56.8 5.2 75 163-237 50-154 (359)
306 1xn7_A Hypothetical protein YH 96.5 0.0016 5.3E-08 44.9 3.0 43 12-59 7-49 (78)
307 3f6o_A Probable transcriptiona 96.5 0.00078 2.7E-08 50.2 1.4 62 5-74 16-77 (118)
308 1r1u_A CZRA, repressor protein 96.5 0.001 3.4E-08 48.5 1.9 48 7-60 26-73 (106)
309 2k02_A Ferrous iron transport 96.5 0.0015 5.3E-08 45.9 2.7 44 12-60 7-50 (87)
310 1i4w_A Mitochondrial replicati 96.4 0.0034 1.2E-07 55.9 5.3 55 164-218 58-116 (353)
311 2jsc_A Transcriptional regulat 96.4 0.0011 3.7E-08 49.4 1.8 60 7-74 21-80 (118)
312 1r7j_A Conserved hypothetical 96.4 0.0024 8.1E-08 45.8 3.3 55 12-79 13-67 (95)
313 3c6k_A Spermine synthase; sper 96.3 0.0032 1.1E-07 56.4 4.7 65 164-229 205-291 (381)
314 2y75_A HTH-type transcriptiona 96.3 0.0035 1.2E-07 47.3 4.1 56 12-74 14-71 (129)
315 2hzt_A Putative HTH-type trans 96.3 0.0028 9.6E-08 46.2 3.3 61 11-77 18-80 (107)
316 1on2_A Transcriptional regulat 96.2 0.0023 8E-08 48.9 3.0 57 13-79 14-70 (142)
317 2kko_A Possible transcriptiona 96.2 0.00058 2E-08 50.1 -0.5 46 9-60 27-72 (108)
318 3khk_A Type I restriction-modi 96.2 0.0017 5.9E-08 61.2 2.6 64 165-228 245-335 (544)
319 2fu4_A Ferric uptake regulatio 96.2 0.0014 4.8E-08 45.4 1.5 48 9-60 19-72 (83)
320 3df8_A Possible HXLR family tr 96.2 0.002 6.8E-08 47.5 2.3 62 9-79 29-93 (111)
321 3s1s_A Restriction endonucleas 96.2 0.006 2E-07 59.7 6.1 66 163-228 320-405 (878)
322 3f6v_A Possible transcriptiona 96.2 0.0019 6.5E-08 50.4 2.0 62 5-74 56-117 (151)
323 1ub9_A Hypothetical protein PH 96.1 0.0013 4.4E-08 46.9 1.0 69 3-76 12-81 (100)
324 3lkd_A Type I restriction-modi 96.1 0.0043 1.5E-07 58.5 4.5 66 164-229 221-304 (542)
325 3gcz_A Polyprotein; flavivirus 96.1 0.0087 3E-07 51.2 5.9 80 151-233 79-167 (282)
326 2wte_A CSA3; antiviral protein 96.0 0.0025 8.4E-08 53.9 2.3 63 8-79 153-215 (244)
327 3evf_A RNA-directed RNA polyme 96.0 0.018 6.1E-07 49.2 7.2 107 152-261 64-184 (277)
328 3bdd_A Regulatory protein MARR 96.0 0.004 1.4E-07 47.1 3.0 66 9-79 33-99 (142)
329 1rjd_A PPM1P, carboxy methyl t 95.9 0.0087 3E-07 52.8 5.5 88 164-251 97-223 (334)
330 1r1t_A Transcriptional repress 95.9 0.003 1E-07 47.4 1.8 47 8-60 47-93 (122)
331 1tbx_A ORF F-93, hypothetical 95.8 0.0039 1.3E-07 44.6 2.2 64 9-79 10-77 (99)
332 3lwf_A LIN1550 protein, putati 95.8 0.012 4.1E-07 46.2 5.1 47 21-74 43-89 (159)
333 3ech_A MEXR, multidrug resista 95.8 0.0046 1.6E-07 47.0 2.7 48 8-60 38-85 (142)
334 2x4h_A Hypothetical protein SS 95.7 0.0055 1.9E-07 46.5 2.9 48 21-78 30-77 (139)
335 3k0l_A Repressor protein; heli 95.7 0.0053 1.8E-07 47.9 2.7 63 9-78 48-113 (162)
336 3bja_A Transcriptional regulat 95.7 0.006 2.1E-07 45.9 2.9 65 8-77 34-99 (139)
337 1ylf_A RRF2 family protein; st 95.6 0.009 3.1E-07 46.3 3.8 46 21-74 29-74 (149)
338 2f2e_A PA1607; transcription f 95.6 0.006 2E-07 47.2 2.7 61 12-78 29-89 (146)
339 3r0a_A Putative transcriptiona 95.6 0.0046 1.6E-07 46.3 2.0 49 8-60 27-76 (123)
340 2px2_A Genome polyprotein [con 95.6 0.0053 1.8E-07 51.9 2.4 77 151-230 62-147 (269)
341 4a5n_A Uncharacterized HTH-typ 95.5 0.01 3.6E-07 45.0 3.8 62 12-79 31-94 (131)
342 3nrv_A Putative transcriptiona 95.5 0.0056 1.9E-07 46.8 2.3 64 8-76 41-105 (148)
343 2bv6_A MGRA, HTH-type transcri 95.5 0.0062 2.1E-07 46.2 2.6 64 9-77 39-103 (142)
344 1z7u_A Hypothetical protein EF 95.5 0.0043 1.5E-07 45.6 1.3 62 11-78 26-89 (112)
345 3fm5_A Transcriptional regulat 95.4 0.0052 1.8E-07 47.2 1.8 64 8-77 40-106 (150)
346 2nnn_A Probable transcriptiona 95.4 0.0032 1.1E-07 47.5 0.6 62 9-77 40-104 (140)
347 2hr3_A Probable transcriptiona 95.4 0.01 3.4E-07 45.2 3.4 65 8-77 36-102 (147)
348 3lkz_A Non-structural protein 95.4 0.022 7.4E-07 49.1 5.6 101 151-254 83-196 (321)
349 3cdh_A Transcriptional regulat 95.3 0.0092 3.1E-07 46.0 2.9 65 9-78 45-110 (155)
350 3boq_A Transcriptional regulat 95.3 0.006 2E-07 47.3 1.7 65 9-77 49-114 (160)
351 3g3z_A NMB1585, transcriptiona 95.3 0.0077 2.6E-07 45.8 2.3 66 8-78 32-98 (145)
352 3bro_A Transcriptional regulat 95.3 0.0069 2.4E-07 45.7 2.0 65 9-77 36-102 (141)
353 2pex_A Transcriptional regulat 95.3 0.0071 2.4E-07 46.5 2.1 66 9-79 49-115 (153)
354 3bj6_A Transcriptional regulat 95.2 0.0073 2.5E-07 46.3 2.1 63 9-76 42-105 (152)
355 2fbh_A Transcriptional regulat 95.2 0.01 3.5E-07 45.0 2.9 47 9-60 39-86 (146)
356 1yyv_A Putative transcriptiona 95.2 0.0055 1.9E-07 46.5 1.3 64 10-79 38-103 (131)
357 3k69_A Putative transcription 95.2 0.025 8.4E-07 44.5 5.2 47 21-74 27-73 (162)
358 3bpv_A Transcriptional regulat 95.2 0.007 2.4E-07 45.5 1.7 47 9-60 31-77 (138)
359 2fsw_A PG_0823 protein; alpha- 95.1 0.0088 3E-07 43.5 2.1 62 12-79 30-93 (107)
360 1xd7_A YWNA; structural genomi 95.1 0.015 5.2E-07 44.8 3.5 45 21-74 23-67 (145)
361 1lj9_A Transcriptional regulat 95.1 0.0054 1.8E-07 46.6 0.9 64 9-77 31-95 (144)
362 2gxg_A 146AA long hypothetical 95.1 0.012 4.1E-07 44.6 2.9 62 9-76 39-101 (146)
363 1sfx_A Conserved hypothetical 95.0 0.0097 3.3E-07 42.7 2.1 47 9-60 22-68 (109)
364 1jgs_A Multiple antibiotic res 95.0 0.008 2.7E-07 45.2 1.7 63 9-78 36-101 (138)
365 3hrs_A Metalloregulator SCAR; 95.0 0.015 5.2E-07 47.9 3.5 51 20-79 18-68 (214)
366 3hsr_A HTH-type transcriptiona 95.0 0.0064 2.2E-07 46.1 1.1 66 9-79 38-104 (140)
367 3deu_A Transcriptional regulat 95.0 0.0082 2.8E-07 47.2 1.6 67 8-78 54-121 (166)
368 2qww_A Transcriptional regulat 94.9 0.011 3.9E-07 45.3 2.4 65 9-78 43-110 (154)
369 2a61_A Transcriptional regulat 94.9 0.0084 2.9E-07 45.5 1.6 62 9-77 35-99 (145)
370 2lkp_A Transcriptional regulat 94.9 0.0084 2.9E-07 44.3 1.5 47 8-60 33-79 (119)
371 2pg4_A Uncharacterized protein 94.9 0.0056 1.9E-07 43.4 0.5 62 12-78 20-82 (95)
372 3oop_A LIN2960 protein; protei 94.9 0.0078 2.7E-07 45.7 1.3 65 8-77 38-103 (143)
373 3s2w_A Transcriptional regulat 94.8 0.0091 3.1E-07 46.3 1.6 63 10-77 53-116 (159)
374 4hbl_A Transcriptional regulat 94.8 0.0079 2.7E-07 46.1 1.2 66 8-78 42-108 (149)
375 3eco_A MEPR; mutlidrug efflux 94.8 0.011 3.8E-07 44.5 2.0 67 8-78 32-100 (139)
376 4aik_A Transcriptional regulat 94.8 0.022 7.6E-07 44.0 3.7 65 9-79 33-100 (151)
377 2rdp_A Putative transcriptiona 94.8 0.011 3.8E-07 45.1 1.9 64 9-77 44-108 (150)
378 2fa5_A Transcriptional regulat 94.7 0.012 4.1E-07 45.6 2.1 47 9-60 51-97 (162)
379 3t8r_A Staphylococcus aureus C 94.7 0.042 1.5E-06 42.2 5.2 47 21-74 27-73 (143)
380 1bja_A Transcription regulator 94.7 0.022 7.5E-07 40.6 3.2 60 9-79 18-78 (95)
381 1z91_A Organic hydroperoxide r 94.7 0.0071 2.4E-07 46.0 0.7 67 9-80 42-109 (147)
382 3cjn_A Transcriptional regulat 94.7 0.011 3.7E-07 45.9 1.7 63 9-76 54-117 (162)
383 1sfu_A 34L protein; protein/Z- 94.7 0.026 8.8E-07 38.2 3.3 54 11-72 19-72 (75)
384 3kp7_A Transcriptional regulat 94.7 0.016 5.4E-07 44.4 2.6 44 9-58 40-83 (151)
385 2h09_A Transcriptional regulat 94.7 0.023 7.7E-07 43.9 3.5 54 15-78 48-101 (155)
386 4g6q_A Putative uncharacterize 94.7 0.067 2.3E-06 42.8 6.4 66 7-78 23-92 (182)
387 2zig_A TTHA0409, putative modi 94.6 0.04 1.4E-06 47.6 5.4 40 164-205 235-275 (297)
388 2eth_A Transcriptional regulat 94.6 0.012 4.1E-07 45.3 1.8 65 8-77 45-110 (154)
389 3tgn_A ADC operon repressor AD 94.6 0.019 6.3E-07 43.6 2.8 63 8-76 39-102 (146)
390 2zkz_A Transcriptional repress 94.6 0.0082 2.8E-07 43.1 0.7 60 7-74 27-86 (99)
391 3e6m_A MARR family transcripti 94.5 0.01 3.5E-07 46.2 1.2 65 9-78 55-120 (161)
392 2lnb_A Z-DNA-binding protein 1 94.5 0.018 6.1E-07 39.0 2.1 57 8-73 20-76 (80)
393 2qvo_A Uncharacterized protein 94.5 0.012 4E-07 41.8 1.3 49 22-79 30-81 (95)
394 1s3j_A YUSO protein; structura 94.4 0.0077 2.6E-07 46.3 0.3 63 9-76 39-102 (155)
395 3jw4_A Transcriptional regulat 94.4 0.014 4.8E-07 44.6 1.7 48 9-60 43-91 (148)
396 2cfx_A HTH-type transcriptiona 94.4 0.024 8.1E-07 43.4 3.0 48 8-60 6-53 (144)
397 2w25_A Probable transcriptiona 94.4 0.023 7.9E-07 43.8 2.9 48 8-60 8-55 (150)
398 2nyx_A Probable transcriptiona 94.3 0.011 3.9E-07 46.3 1.0 64 9-77 47-111 (168)
399 2fbi_A Probable transcriptiona 94.3 0.01 3.6E-07 44.7 0.8 47 9-60 38-84 (142)
400 2pn6_A ST1022, 150AA long hypo 94.2 0.025 8.5E-07 43.5 2.8 48 8-60 4-51 (150)
401 3f3x_A Transcriptional regulat 94.2 0.013 4.3E-07 44.6 1.0 64 8-79 38-104 (144)
402 3u2r_A Regulatory protein MARR 94.2 0.016 5.5E-07 45.3 1.6 65 9-79 48-116 (168)
403 2obp_A Putative DNA-binding pr 94.1 0.031 1E-06 40.0 2.9 51 21-76 35-85 (96)
404 3cvo_A Methyltransferase-like 94.1 0.089 3.1E-06 42.9 6.1 52 163-217 29-90 (202)
405 2qlz_A Transcription factor PF 94.1 0.01 3.5E-07 49.6 0.4 63 6-76 11-79 (232)
406 1q1h_A TFE, transcription fact 94.0 0.018 6E-07 41.9 1.4 46 10-59 21-66 (110)
407 2k4b_A Transcriptional regulat 94.0 0.013 4.6E-07 42.1 0.8 51 9-60 37-87 (99)
408 2p5v_A Transcriptional regulat 94.0 0.031 1.1E-06 43.7 2.9 48 8-60 11-58 (162)
409 2fxa_A Protease production reg 93.9 0.016 5.4E-07 47.4 1.2 66 9-79 50-116 (207)
410 2dbb_A Putative HTH-type trans 93.9 0.03 1E-06 43.1 2.7 48 8-60 10-57 (151)
411 3i4p_A Transcriptional regulat 93.8 0.034 1.2E-06 43.5 2.9 48 8-60 4-51 (162)
412 2fe3_A Peroxide operon regulat 93.8 0.06 2.1E-06 41.4 4.2 59 9-72 24-87 (145)
413 2fbk_A Transcriptional regulat 93.8 0.017 5.8E-07 45.9 1.1 64 9-76 71-137 (181)
414 3eld_A Methyltransferase; flav 93.7 0.12 4E-06 44.5 6.3 72 162-233 79-158 (300)
415 1p6r_A Penicillinase repressor 93.7 0.018 6.1E-07 39.6 1.0 52 8-60 10-61 (82)
416 2p4w_A Transcriptional regulat 93.7 0.032 1.1E-06 45.6 2.6 68 3-76 11-81 (202)
417 2hoe_A N-acetylglucosamine kin 93.7 0.034 1.2E-06 49.8 3.0 69 2-76 15-87 (380)
418 2ia0_A Putative HTH-type trans 93.6 0.039 1.3E-06 43.7 2.9 48 8-60 18-65 (171)
419 2d1h_A ST1889, 109AA long hypo 93.6 0.034 1.1E-06 39.7 2.3 36 21-60 35-70 (109)
420 2cg4_A Regulatory protein ASNC 93.5 0.033 1.1E-06 43.0 2.3 48 8-60 9-56 (152)
421 2cyy_A Putative HTH-type trans 93.5 0.031 1E-06 43.1 2.1 48 8-60 8-55 (151)
422 3k2z_A LEXA repressor; winged 93.4 0.031 1.1E-06 45.2 2.1 42 15-60 17-58 (196)
423 1ku9_A Hypothetical protein MJ 93.4 0.031 1.1E-06 42.4 2.0 46 11-60 30-75 (152)
424 1j5y_A Transcriptional regulat 93.4 0.045 1.5E-06 44.0 3.0 57 9-75 23-80 (187)
425 1okr_A MECI, methicillin resis 93.3 0.011 3.8E-07 43.7 -0.6 48 8-60 11-62 (123)
426 2e1c_A Putative HTH-type trans 93.2 0.046 1.6E-06 43.3 2.7 48 8-60 28-75 (171)
427 1uly_A Hypothetical protein PH 93.2 0.051 1.8E-06 43.9 3.0 49 5-59 18-66 (192)
428 1i1g_A Transcriptional regulat 93.1 0.035 1.2E-06 42.1 1.8 47 9-60 6-52 (141)
429 2xvc_A ESCRT-III, SSO0910; cel 93.0 0.039 1.3E-06 34.9 1.6 47 9-59 12-58 (59)
430 4fx0_A Probable transcriptiona 92.8 0.036 1.2E-06 42.6 1.6 63 10-76 36-102 (148)
431 2uyo_A Hypothetical protein ML 92.8 0.13 4.3E-06 44.9 5.2 75 164-240 102-197 (310)
432 3nqo_A MARR-family transcripti 92.7 0.041 1.4E-06 44.1 1.8 68 8-79 42-111 (189)
433 2o03_A Probable zinc uptake re 92.7 0.069 2.3E-06 40.2 3.0 61 6-71 10-75 (131)
434 4b8x_A SCO5413, possible MARR- 92.7 0.029 1E-06 43.0 0.8 62 11-78 39-104 (147)
435 1mzb_A Ferric uptake regulatio 92.4 0.094 3.2E-06 39.7 3.5 60 8-72 19-84 (136)
436 3mwm_A ZUR, putative metal upt 92.2 0.1 3.4E-06 39.8 3.3 67 6-73 13-80 (139)
437 3i71_A Ethanolamine utilizatio 92.1 0.22 7.7E-06 31.5 4.2 50 14-73 10-59 (68)
438 1v4r_A Transcriptional repress 92.0 0.17 5.9E-06 36.1 4.2 52 4-60 16-69 (102)
439 3u1d_A Uncharacterized protein 91.8 0.11 3.8E-06 40.2 3.1 86 9-111 31-125 (151)
440 2frh_A SARA, staphylococcal ac 91.5 0.058 2E-06 40.2 1.3 66 9-78 39-106 (127)
441 3cta_A Riboflavin kinase; stru 91.5 0.057 1.9E-06 44.8 1.3 53 21-79 26-78 (230)
442 2dk5_A DNA-directed RNA polyme 91.2 0.1 3.6E-06 36.7 2.3 48 9-60 22-70 (91)
443 2vn2_A DNAD, chromosome replic 91.2 0.16 5.5E-06 38.0 3.5 34 23-60 52-85 (128)
444 1z6r_A MLC protein; transcript 91.1 0.16 5.4E-06 45.6 4.0 52 4-60 13-64 (406)
445 3elk_A Putative transcriptiona 91.1 0.11 3.8E-06 38.4 2.4 72 2-79 9-90 (117)
446 3iei_A Leucine carboxyl methyl 90.9 2.4 8.2E-05 37.1 11.3 101 164-264 90-281 (334)
447 2g9w_A Conserved hypothetical 90.7 0.11 3.6E-06 39.4 2.0 53 8-60 10-62 (138)
448 1p4x_A Staphylococcal accessor 90.7 0.089 3E-06 44.3 1.7 64 9-78 160-227 (250)
449 3ufb_A Type I restriction-modi 90.6 0.27 9.3E-06 46.0 5.2 75 152-228 207-308 (530)
450 2wk1_A NOVP; transferase, O-me 90.4 0.19 6.6E-06 43.0 3.6 67 163-229 105-216 (282)
451 1sd4_A Penicillinase repressor 90.2 0.08 2.8E-06 39.1 1.0 52 8-60 11-62 (126)
452 2xig_A Ferric uptake regulatio 90.1 0.21 7.1E-06 38.5 3.3 61 7-72 27-92 (150)
453 1zkd_A DUF185; NESG, RPR58, st 90.1 0.89 3E-05 40.7 7.9 101 132-240 54-167 (387)
454 1fx7_A Iron-dependent represso 90.0 0.095 3.2E-06 43.4 1.3 47 24-79 26-72 (230)
455 4esf_A PADR-like transcription 89.9 0.19 6.5E-06 37.1 2.8 68 3-76 7-83 (117)
456 3vyw_A MNMC2; tRNA wobble urid 89.9 1.4 4.9E-05 38.1 8.7 107 164-274 96-258 (308)
457 2o0m_A Transcriptional regulat 89.6 0.065 2.2E-06 47.3 0.0 61 9-80 22-82 (345)
458 4fzv_A Putative methyltransfer 89.6 0.4 1.4E-05 42.5 5.2 67 162-228 146-229 (359)
459 2p8t_A Hypothetical protein PH 89.4 0.18 6E-06 41.0 2.4 46 21-76 29-74 (200)
460 2py6_A Methyltransferase FKBM; 89.4 0.37 1.3E-05 43.5 4.9 54 163-216 225-291 (409)
461 2pjp_A Selenocysteine-specific 89.4 0.21 7.2E-06 37.0 2.7 56 7-73 7-62 (121)
462 1cf7_A Protein (transcription 89.4 0.23 7.9E-06 33.7 2.6 50 12-70 19-70 (76)
463 2qq9_A Diphtheria toxin repres 88.7 0.27 9.3E-06 40.5 3.2 49 22-79 24-72 (226)
464 2esh_A Conserved hypothetical 88.6 0.59 2E-05 34.3 4.7 73 3-77 9-88 (118)
465 1z05_A Transcriptional regulat 88.4 0.25 8.5E-06 44.8 3.0 52 4-60 36-87 (429)
466 2vz8_A Fatty acid synthase; tr 88.2 0.17 5.9E-06 55.8 2.1 73 165-237 1241-1326(2512)
467 2oo3_A Protein involved in cat 88.2 0.23 7.9E-06 42.5 2.5 62 165-228 92-165 (283)
468 3l7w_A Putative uncharacterize 88.2 0.22 7.5E-06 36.0 2.0 68 3-76 5-78 (108)
469 3eyi_A Z-DNA-binding protein 1 88.1 0.42 1.4E-05 31.5 3.0 48 9-60 12-59 (72)
470 1jhg_A Trp operon repressor; c 87.8 0.32 1.1E-05 34.9 2.6 41 6-52 44-84 (101)
471 2v79_A DNA replication protein 87.4 0.21 7.2E-06 37.9 1.6 36 21-60 50-85 (135)
472 1g60_A Adenine-specific methyl 86.6 0.73 2.5E-05 38.6 4.7 49 151-204 202-251 (260)
473 2w57_A Ferric uptake regulatio 86.5 0.3 1E-05 37.6 2.1 63 9-72 19-83 (150)
474 2oz6_A Virulence factor regula 86.1 0.43 1.5E-05 37.8 2.9 40 22-71 164-203 (207)
475 3hhh_A Transcriptional regulat 85.8 0.29 1E-05 36.0 1.6 64 7-76 13-85 (116)
476 3dv8_A Transcriptional regulat 85.6 0.58 2E-05 37.4 3.5 42 22-73 169-210 (220)
477 2qlz_A Transcription factor PF 85.5 0.47 1.6E-05 39.4 2.9 51 12-73 170-220 (232)
478 3f8b_A Transcriptional regulat 85.3 0.46 1.6E-05 34.8 2.5 67 4-76 9-86 (116)
479 2zcw_A TTHA1359, transcription 85.2 0.55 1.9E-05 37.2 3.1 42 22-73 146-187 (202)
480 1yg2_A Gene activator APHA; vi 85.1 0.55 1.9E-05 37.1 3.0 63 8-76 3-76 (179)
481 3lmm_A Uncharacterized protein 85.1 0.45 1.5E-05 45.1 2.8 56 10-76 433-493 (583)
482 1hsj_A Fusion protein consisti 85.0 0.28 9.6E-06 44.9 1.4 63 9-77 406-472 (487)
483 2b0l_A GTP-sensing transcripti 85.0 0.34 1.1E-05 34.8 1.5 47 9-60 30-77 (102)
484 3e97_A Transcriptional regulat 85.0 0.67 2.3E-05 37.4 3.6 42 22-73 175-216 (231)
485 3ryp_A Catabolite gene activat 85.0 0.53 1.8E-05 37.3 2.9 40 22-71 167-206 (210)
486 2gau_A Transcriptional regulat 84.9 0.69 2.4E-05 37.4 3.7 43 21-73 179-221 (232)
487 2zwa_A Leucine carboxyl methyl 84.7 5.4 0.00019 38.3 10.4 100 164-263 107-308 (695)
488 3iwz_A CAP-like, catabolite ac 84.6 0.56 1.9E-05 37.8 2.9 40 22-71 187-226 (230)
489 1bia_A BIRA bifunctional prote 84.5 0.66 2.3E-05 40.4 3.5 57 9-74 7-63 (321)
490 3qph_A TRMB, A global transcri 84.5 0.087 3E-06 46.5 -2.2 58 8-73 19-76 (342)
491 4ev0_A Transcription regulator 84.4 0.61 2.1E-05 37.2 3.1 43 21-73 162-204 (216)
492 3b02_A Transcriptional regulat 84.3 0.54 1.9E-05 37.1 2.7 42 22-73 139-180 (195)
493 3d0s_A Transcriptional regulat 84.3 0.74 2.5E-05 37.1 3.6 43 21-73 176-218 (227)
494 3maj_A DNA processing chain A; 84.1 0.48 1.6E-05 42.3 2.4 53 9-72 330-382 (382)
495 1xma_A Predicted transcription 84.0 0.24 8.2E-06 38.0 0.4 64 7-76 41-115 (145)
496 3la7_A Global nitrogen regulat 84.0 0.77 2.6E-05 37.6 3.6 43 21-73 192-234 (243)
497 3dkw_A DNR protein; CRP-FNR, H 83.9 0.62 2.1E-05 37.4 3.0 43 21-73 177-219 (227)
498 3r24_A NSP16, 2'-O-methyl tran 83.7 1.3 4.4E-05 38.2 4.8 60 162-228 107-175 (344)
499 3e6c_C CPRK, cyclic nucleotide 83.3 0.85 2.9E-05 37.5 3.6 44 21-74 176-219 (250)
500 1zyb_A Transcription regulator 83.1 0.78 2.7E-05 37.3 3.2 42 22-73 186-227 (232)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=8.8e-50 Score=361.09 Aligned_cols=266 Identities=24% Similarity=0.387 Sum_probs=239.6
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLV 79 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~ 79 (276)
|++|++|+++||||+|.+.++|+|++|||+++|+++ +.+.|||++|++.|+|.+..+ ++++.|++|+.+. ++.
T Consensus 22 s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~----~~l~rlLr~L~~~gll~~~~~--~~~~~y~~t~~s~~~l~ 95 (353)
T 4a6d_A 22 SQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASA----HGTELLLDICVSLKLLKVETR--GGKAFYRNTELSSDYLT 95 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEE--TTEEEEEECHHHHHHHS
T ss_pred HHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCH----HHHHHHHHHHHHCCCEEEecc--CccceeeCCHHHHHHhh
Confidence 689999999999999987557999999999999977 999999999999999986541 2245899999986 788
Q ss_pred cCCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCC---cchhhcccChHHHHHHHHHHHhhhhhhHHHHHh
Q 046375 80 TGSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGD---AYIDLASKDQQFNKIFNEGMACNAKFLTREILA 156 (276)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~---~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~ 156 (276)
++++. ++++++.+. .+..+..|.+|++++++++++|...+|. ++|+++.++|+..+.|+++|...+....+.+++
T Consensus 96 ~~~~~-~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~ 173 (353)
T 4a6d_A 96 TVSPT-SQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLT 173 (353)
T ss_dssp TTSTT-CCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCCch-HHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877 888887765 3467889999999999999888888773 689999999999999999999988888899999
Q ss_pred ccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC------CCCeEEEEccCCC-CCCCccEEEEc
Q 046375 157 GYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV------YDGVTHVSGDMFH-TIPNADALLLK 229 (276)
Q Consensus 157 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~------~~ri~~~~~d~~~-~~p~~D~i~l~ 229 (276)
.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||++++|||++ |.|++|+|+++
T Consensus 174 ~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~ 251 (353)
T 4a6d_A 174 AFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILA 251 (353)
T ss_dssp SSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEE
T ss_pred hcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEee
Confidence 999 89999999999999999999999999999999999999987764 6899999999998 57789999999
Q ss_pred ccccCCCcccc------------------------------------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 230 WVLHNWSDEAC------------------------------------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 230 ~vlh~~~~~~~------------------------------------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+|||+|+|+++ +||.+||++||++|||+.+++
T Consensus 252 ~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v 331 (353)
T 4a6d_A 252 RVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF 331 (353)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred eecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 99999999987 589999999999999999999
Q ss_pred EecCCccEEEEEecC
Q 046375 262 IKIPALQCIIESYPE 276 (276)
Q Consensus 262 ~~~~~~~~vi~a~~~ 276 (276)
++.++..++|+|+|.
T Consensus 332 ~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 332 KKTGAIYDAILARKG 346 (353)
T ss_dssp ECCSSSCEEEEEECC
T ss_pred EEcCCceEEEEEEec
Confidence 999999999999984
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=9.9e-46 Score=335.84 Aligned_cols=272 Identities=36% Similarity=0.692 Sum_probs=239.2
Q ss_pred ChHhHHHHHcChhhhhhhCC-CCCCHHHHHhhcCC--CCCCCcchHHHHHHHHhcCCceeecCCC-CCC--CCeEecCcc
Q 046375 1 SLALKCAIELRIPDIIHSHG-GPITSSQIASSIDS--PSSPEISYIERIMRLLGHKNIFAAQHPS-DGG--EPLYGLTHS 74 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~-~~~t~~eLA~~~~~--~~~~~~~~l~~lL~~L~~~Gll~~~~~~-~~~--~~~y~~t~~ 74 (276)
|++|++|+++|||++|.+.| +|+|++|||+++|+ +|. +...+.||||+|++.|+|++.... +.+ +++|++|+.
T Consensus 34 ~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~-~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~ 112 (364)
T 3p9c_A 34 PMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPE-APDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPV 112 (364)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTT-HHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGG
T ss_pred HHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCcc-chhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHH
Confidence 47899999999999999853 69999999999998 760 112899999999999999987200 001 268999999
Q ss_pred ccccccCC-CCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHH
Q 046375 75 SRWLVTGS-DSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTRE 153 (276)
Q Consensus 75 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~ 153 (276)
+++|..+. +. ++++++.+..++.++..|.+|.+++++|.++|+..+|.++|+++.++|+..+.|+++|...+....+.
T Consensus 113 s~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~ 191 (364)
T 3p9c_A 113 CKFLTPNEDGV-SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKK 191 (364)
T ss_dssp GGGSSCCTTSC-CTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCC-CHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHH
Confidence 99887654 44 78888777666778899999999999998889989999999999999999999999999988777788
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCCCCccEEEEccccc
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTIPNADALLLKWVLH 233 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~l~~vlh 233 (276)
+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.+|+++|+|..|+|+++++||
T Consensus 192 ~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh 270 (364)
T 3p9c_A 192 LLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILH 270 (364)
T ss_dssp HHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred HHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhc
Confidence 888876 3677899999999999999999999999999999999999999988999999999999888779999999999
Q ss_pred CCCcccc----------------------------------------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 234 NWSDEAC----------------------------------------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 234 ~~~~~~~----------------------------------------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+|+++++ +||.+||.++|+++||+.+++
T Consensus 271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~ 350 (364)
T 3p9c_A 271 DWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKS 350 (364)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEE
Confidence 9999876 368999999999999999999
Q ss_pred EecCCccEEEEEec
Q 046375 262 IKIPALQCIIESYP 275 (276)
Q Consensus 262 ~~~~~~~~vi~a~~ 275 (276)
.+.++..++||++|
T Consensus 351 ~~~~~~~~vie~~k 364 (364)
T 3p9c_A 351 TYIYANAWAIEFTK 364 (364)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEcCCceEEEEEeC
Confidence 99988999999987
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.6e-44 Score=325.88 Aligned_cols=261 Identities=22% Similarity=0.378 Sum_probs=237.0
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
+++|++|+++|||++|.+ +|.|++|||+++|++| +.+.|||++|++.|+|++ + +++|++|+.+..|.+
T Consensus 36 ~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~----~~l~rlLr~l~~~g~l~~-~-----~~~y~~t~~s~~l~~ 103 (348)
T 3lst_A 36 AAALRAAAAVGVADHLVD--GPRTPAELAAATGTDA----DALRRVLRLLAVRDVVRE-S-----DGRFALTDKGAALRS 103 (348)
T ss_dssp HHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEE-E-----TTEEEECTTTGGGST
T ss_pred HHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCH----HHHHHHHHHHHhCCCEEe-c-----CCEEecCHHHHHHhc
Confidence 478999999999999986 7999999999999977 999999999999999999 4 389999999998887
Q ss_pred CCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhcccc
Q 046375 81 GSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYKH 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~ 160 (276)
+++. ++++++.++.++..++.|.+|+++++++.++|...+|.++|+++.++|+..+.|.++|...+....+.+++.++
T Consensus 104 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~- 181 (348)
T 3lst_A 104 DSPV-PARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD- 181 (348)
T ss_dssp TSSS-CSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-
T ss_pred CCCc-cHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-
Confidence 7766 78888777656667899999999999998889888998999999999999999999999988888889999998
Q ss_pred CCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-----CCCeEEEEccCCCCCCCccEEEEcccccCC
Q 046375 161 GFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-----YDGVTHVSGDMFHTIPNADALLLKWVLHNW 235 (276)
Q Consensus 161 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-----~~ri~~~~~d~~~~~p~~D~i~l~~vlh~~ 235 (276)
+++..+|||||||+|.++..+++++|+++++++|+|.++...+. .+||+++.+|+++++|++|+|++++++|+|
T Consensus 182 -~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~ 260 (348)
T 3lst_A 182 -FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNW 260 (348)
T ss_dssp -CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred -ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCC
Confidence 88899999999999999999999999999999999988873322 578999999999888899999999999999
Q ss_pred Ccccc-----------------------------------------------ccCHHHHHHhHhhCCCCceEEEecCCcc
Q 046375 236 SDEAC-----------------------------------------------ERTELEWKNIPEKGGSPRYRIIKIPALQ 268 (276)
Q Consensus 236 ~~~~~-----------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~ 268 (276)
+++++ +||.+||.++|+++||+++++.+.++..
T Consensus 261 ~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 340 (348)
T 3lst_A 261 GDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVM 340 (348)
T ss_dssp CHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEECCCCc
Confidence 99864 3689999999999999999999977789
Q ss_pred EEEEEecC
Q 046375 269 CIIESYPE 276 (276)
Q Consensus 269 ~vi~a~~~ 276 (276)
++|+++|.
T Consensus 341 ~vie~~pa 348 (348)
T 3lst_A 341 SIAVGVPA 348 (348)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999984
No 4
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=3.3e-44 Score=326.24 Aligned_cols=273 Identities=36% Similarity=0.710 Sum_probs=237.9
Q ss_pred ChHhHHHHHcChhhhhhhC---CCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecCCC-CCC--CCeEecCc
Q 046375 1 SLALKCAIELRIPDIIHSH---GGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQHPS-DGG--EPLYGLTH 73 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~---~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~~~-~~~--~~~y~~t~ 73 (276)
|++|++|+++|||+.|.+. ++|+|++|||+++|+ +|. +.+.+.||||+|++.|+|++.... +.+ +++|++|+
T Consensus 35 ~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~-~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~ 113 (368)
T 3reo_A 35 PMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPE-APVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAP 113 (368)
T ss_dssp HHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTT-HHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred HHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCc-chhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCH
Confidence 5789999999999999873 257999999999984 551 224899999999999999986100 001 26899999
Q ss_pred cccccccCC-CCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHH
Q 046375 74 SSRWLVTGS-DSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTR 152 (276)
Q Consensus 74 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 152 (276)
.++.|..+. +. ++++++.+..++.++..|.+|++++++|.++|+..+|.++|+++.++|+..+.|+++|...+....+
T Consensus 114 ~s~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 192 (368)
T 3reo_A 114 VCKFLTKNEDGV-SLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMK 192 (368)
T ss_dssp THHHHSCCTTSC-CSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCC-CHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHH
Confidence 999776554 45 7888877766677889999999999999888998999999999999999999999999998887788
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCCCCccEEEEcccc
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTIPNADALLLKWVL 232 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~l~~vl 232 (276)
.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.+|+++|+|..|+|++++++
T Consensus 193 ~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vl 271 (368)
T 3reo_A 193 KILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWIC 271 (368)
T ss_dssp HHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCG
T ss_pred HHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechh
Confidence 8888876 367789999999999999999999999999999999999999988889999999999988877999999999
Q ss_pred cCCCcccc----------------------------------------------------ccCHHHHHHhHhhCCCCceE
Q 046375 233 HNWSDEAC----------------------------------------------------ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 233 h~~~~~~~----------------------------------------------------~rt~~e~~~ll~~aGf~~~~ 260 (276)
|+|+++++ +||.+||+++|+++||+.++
T Consensus 272 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 351 (368)
T 3reo_A 272 HDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFK 351 (368)
T ss_dssp GGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeE
Confidence 99999875 36899999999999999999
Q ss_pred EEecCCccEEEEEecC
Q 046375 261 IIKIPALQCIIESYPE 276 (276)
Q Consensus 261 ~~~~~~~~~vi~a~~~ 276 (276)
+.+..+...+|+++|.
T Consensus 352 ~~~~~~~~~vie~~k~ 367 (368)
T 3reo_A 352 VASCAFNTYVMEFLKT 367 (368)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred EEEeCCCcEEEEEEeC
Confidence 9999888999999884
No 5
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=2.7e-44 Score=322.23 Aligned_cols=260 Identities=24% Similarity=0.362 Sum_probs=234.7
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
|++|++|+++|||++|.+ +|.|++|||+++|++| +.+.|||++|++.|++.+.+ +++|.+|+.++.+.+
T Consensus 19 ~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~----~~l~rlLr~l~~~gl~~~~~-----~~~y~~t~~s~~l~~ 87 (332)
T 3i53_A 19 PMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHA----DSLDRLLRHLVAVGLFTRDG-----QGVYGLTEFGEQLRD 87 (332)
T ss_dssp HHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECT-----TSBEEECTTGGGGST
T ss_pred HHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCH----HHHHHHHHHHHhCCcEEecC-----CCeEEcCHhHHHHhc
Confidence 578999999999999986 7999999999999977 99999999999999999986 489999999998877
Q ss_pred CCCCCChhhHHHhhcChhhh-hhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccc
Q 046375 81 GSDSNQLGPVFLVENHPYMV-NSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYK 159 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 159 (276)
+++. ++.+++.+..++..+ +.|.+|+++++++.++|...+|.++|+++.++|+..+.|.++|...+....+.+++.++
T Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 166 (332)
T 3i53_A 88 DHAA-GKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD 166 (332)
T ss_dssp TCTT-CCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC
T ss_pred CCch-hHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC
Confidence 7765 788887665443455 78999999999998888888898899999999999999999999887777777888888
Q ss_pred cCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCCCCC-CccEEEEccc
Q 046375 160 HGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFHTIP-NADALLLKWV 231 (276)
Q Consensus 160 ~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~~~p-~~D~i~l~~v 231 (276)
+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++| ++|+|+++++
T Consensus 167 --~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~v 244 (332)
T 3i53_A 167 --WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAV 244 (332)
T ss_dssp --CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESC
T ss_pred --CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehh
Confidence 78889999999999999999999999999999999999988875 4799999999998888 6999999999
Q ss_pred ccCCCcccc--------------------------------------------ccCHHHHHHhHhhCCCCceEEEecCCc
Q 046375 232 LHNWSDEAC--------------------------------------------ERTELEWKNIPEKGGSPRYRIIKIPAL 267 (276)
Q Consensus 232 lh~~~~~~~--------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~ 267 (276)
+|+|+++++ +||.+||.++|+++||+++++.+.++
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~- 323 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY- 323 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-
Confidence 999999754 26899999999999999999999988
Q ss_pred cEEEEEec
Q 046375 268 QCIIESYP 275 (276)
Q Consensus 268 ~~vi~a~~ 275 (276)
.++|++++
T Consensus 324 ~~vie~r~ 331 (332)
T 3i53_A 324 VSIVEMTA 331 (332)
T ss_dssp SEEEEEEE
T ss_pred cEEEEEee
Confidence 99999987
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=4.1e-44 Score=325.71 Aligned_cols=261 Identities=26% Similarity=0.485 Sum_probs=238.6
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCe-EecCccccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPL-YGLTHSSRWLV 79 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~-y~~t~~~~~l~ 79 (276)
|++|++|+++|||+.|.+ +|+|++|||+++|++| +.+.|||++|++.|+|++.+ +++ |++|+.++.|.
T Consensus 52 ~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~----~~l~rlLr~L~~~g~l~~~~-----~~~~y~~t~~s~~L~ 120 (369)
T 3gwz_A 52 ARAIHVAVELGVPELLQE--GPRTATALAEATGAHE----QTLRRLLRLLATVGVFDDLG-----HDDLFAQNALSAVLL 120 (369)
T ss_dssp HHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSSEECS-----STTEEECCHHHHTTS
T ss_pred HHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCH----HHHHHHHHHHHhCCCEEEeC-----CCceEecCHHHHHHh
Confidence 478999999999999996 7999999999999977 99999999999999999976 488 99999999888
Q ss_pred cCCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccc
Q 046375 80 TGSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYK 159 (276)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 159 (276)
++++. ++.+++.++.++..++.|.+|+++++++.++|...+|.++|+++.++|+..+.|+++|...+....+.+++.++
T Consensus 121 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~ 199 (369)
T 3gwz_A 121 PDPAS-PVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD 199 (369)
T ss_dssp CCTTC-HHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCch-hHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC
Confidence 77766 78888877656557789999999999998888888898899999999999999999999988877888999998
Q ss_pred cCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCCCCC-CccEEEEccc
Q 046375 160 HGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFHTIP-NADALLLKWV 231 (276)
Q Consensus 160 ~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~~~p-~~D~i~l~~v 231 (276)
+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++| ++|+|+++++
T Consensus 200 --~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~v 277 (369)
T 3gwz_A 200 --FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHV 277 (369)
T ss_dssp --CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESC
T ss_pred --CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhh
Confidence 88889999999999999999999999999999999999988775 5799999999998888 6999999999
Q ss_pred ccCCCcccc----------------------------------------------ccCHHHHHHhHhhCCCCceEEEe-c
Q 046375 232 LHNWSDEAC----------------------------------------------ERTELEWKNIPEKGGSPRYRIIK-I 264 (276)
Q Consensus 232 lh~~~~~~~----------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~-~ 264 (276)
+|+|+++++ +||.+||.++|+++||+++++.+ .
T Consensus 278 lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 357 (369)
T 3gwz_A 278 LHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCG 357 (369)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEECS
T ss_pred hccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEECC
Confidence 999999874 27899999999999999999999 5
Q ss_pred CCccEEEEEec
Q 046375 265 PALQCIIESYP 275 (276)
Q Consensus 265 ~~~~~vi~a~~ 275 (276)
++..++|+++|
T Consensus 358 ~~~~svie~~~ 368 (369)
T 3gwz_A 358 AGPVRIVEIRR 368 (369)
T ss_dssp SSSEEEEEEEE
T ss_pred CCCcEEEEEEe
Confidence 77899999987
No 7
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-42 Score=311.50 Aligned_cols=257 Identities=25% Similarity=0.387 Sum_probs=232.3
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
+++|++++++|||+.|.+ +|.|++|||+++|+++ +.+.|||++|++.|+|.+.+ ++.|++|+.++.|.
T Consensus 22 ~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~----~~l~r~Lr~L~~~g~l~~~~-----~~~y~~t~~s~~l~- 89 (334)
T 2ip2_A 22 SRCVYVATRLGLADLIES--GIDSDETLAAAVGSDA----ERIHRLMRLLVAFEIFQGDT-----RDGYANTPTSHLLR- 89 (334)
T ss_dssp HHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET-----TTEEEECHHHHTTS-
T ss_pred HHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCH----HHHHHHHHHHHhCCceEecC-----CCeEecCHHHHHHh-
Confidence 478999999999999986 7999999999999977 99999999999999999987 48999999998888
Q ss_pred CCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhcccc
Q 046375 81 GSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYKH 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~ 160 (276)
+++. ++++++.+..++.. +.|.+|+++++++.++|...+|.++|+++.++|+..+.|+++| ..+....+.+++.++
T Consensus 90 ~~~~-~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~- 165 (334)
T 2ip2_A 90 DVEG-SFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD- 165 (334)
T ss_dssp SSTT-CSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-
T ss_pred CCCc-cHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-
Confidence 6665 78888877655444 8999999999999888888888899999999999999999999 877777888899888
Q ss_pred CCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCCCCCC-ccEEEEcccc
Q 046375 161 GFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFHTIPN-ADALLLKWVL 232 (276)
Q Consensus 161 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~~~p~-~D~i~l~~vl 232 (276)
+++ .+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++|+ +|+|++++++
T Consensus 166 -~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl 243 (334)
T 2ip2_A 166 -FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRII 243 (334)
T ss_dssp -CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCG
T ss_pred -CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhc
Confidence 777 9999999999999999999999999999999988887765 47899999999998875 9999999999
Q ss_pred cCCCcccc-----------------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 233 HNWSDEAC-----------------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 233 h~~~~~~~-----------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
|+|+++++ +|+.+||.++|+++||+++++.+.+
T Consensus 244 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 323 (334)
T 2ip2_A 244 GDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLP 323 (334)
T ss_dssp GGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEET
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECC
Confidence 99998874 3689999999999999999999988
Q ss_pred CccEEEEEec
Q 046375 266 ALQCIIESYP 275 (276)
Q Consensus 266 ~~~~vi~a~~ 275 (276)
+..++|+++|
T Consensus 324 ~~~~~i~~~~ 333 (334)
T 2ip2_A 324 METRMIVAAR 333 (334)
T ss_dssp TTEEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 8899999987
No 8
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.6e-42 Score=313.99 Aligned_cols=271 Identities=38% Similarity=0.677 Sum_probs=235.5
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec-----CCCCCC-CCeEecCcc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ-----HPSDGG-EPLYGLTHS 74 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~-----~~~~~~-~~~y~~t~~ 74 (276)
+++|++|+++|||+.|...++|.|++|||+++|++|. +.+.+.|||++|++.|+|.+. +. +|+ +++|++|+.
T Consensus 24 ~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~-~~~~l~rlLr~L~~~gll~~~~~~~~~~-~g~~~~~y~~t~~ 101 (358)
T 1zg3_A 24 SMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS-KVNILHRFLRLLTHNGFFAKTIVKGKEG-DEEEEIAYSLTPP 101 (358)
T ss_dssp HHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTT-THHHHHHHHHHHHHTTSEEEEEECCSSS-SCCCEEEEEECHH
T ss_pred HHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCc-chHHHHHHHHHHhhCCcEEEeccccccc-CCCCCCEEeCCHH
Confidence 4789999999999999974359999999999999641 348999999999999999987 10 001 279999999
Q ss_pred ccccccCCCCCChhhHHHhhcChhhhhhhhhHHHhHhcC--chhhhhhhCCcchhhcccChHHHH--HHHHHHHhhhhhh
Q 046375 75 SRWLVTGSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEG--GSAIEKAFGDAYIDLASKDQQFNK--IFNEGMACNAKFL 150 (276)
Q Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~~~~~~~~~~--~f~~~m~~~~~~~ 150 (276)
+++|+++++. ++++++.+..++..++.|.+|+++++++ .++|...+|.++|+++.++|+..+ .|+++|...+...
T Consensus 102 s~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~ 180 (358)
T 1zg3_A 102 SKLLISGKPT-CLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180 (358)
T ss_dssp HHTTCTTSTT-CCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhCCCCc-cHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHH
Confidence 9999888876 8888888766667889999999999998 455888889899999999999999 9999999877665
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCCCCccEEEEcc
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTIPNADALLLKW 230 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~l~~ 230 (276)
. .+++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..+|+++.+|+++++|++|+|++++
T Consensus 181 ~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~ 259 (358)
T 1zg3_A 181 K-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 259 (358)
T ss_dssp H-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEES
T ss_pred H-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcc
Confidence 5 778877212677899999999999999999999999999999999999998876679999999999888899999999
Q ss_pred cccCCCcccc------------------------------------------------------ccCHHHHHHhHhhCCC
Q 046375 231 VLHNWSDEAC------------------------------------------------------ERTELEWKNIPEKGGS 256 (276)
Q Consensus 231 vlh~~~~~~~------------------------------------------------------~rt~~e~~~ll~~aGf 256 (276)
+||+|+++++ +||.+||.++|+++||
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 339 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGF 339 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCC
Confidence 9999998763 1478899999999999
Q ss_pred CceEEEecCCccEEEEEec
Q 046375 257 PRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 257 ~~~~~~~~~~~~~vi~a~~ 275 (276)
+++++.+.++..++|+++|
T Consensus 340 ~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 340 SSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CEEEEEEETTTEEEEEEEC
T ss_pred CeeEEEecCCCcEEEEEeC
Confidence 9999999888889999986
No 9
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=3e-42 Score=311.43 Aligned_cols=267 Identities=39% Similarity=0.683 Sum_probs=235.5
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec--CCCCCCCCeEecCcccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ--HPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~--~~~~~~~~~y~~t~~~~~l 78 (276)
+++|++|+++|||+.|...++|.|++|||+++|++|. +.+.+.|||++|++.|+|++. + +++|++|+.+++|
T Consensus 30 ~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~-~~~~l~rlLr~L~~~gll~~~~~~-----~~~y~~t~~s~~L 103 (352)
T 1fp2_A 30 SMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSS-KIGNVRRLMRYLAHNGFFEIITKE-----EESYALTVASELL 103 (352)
T ss_dssp HHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGG-GHHHHHHHHHHHHHTTSEEEEESS-----SEEEEECHHHHTT
T ss_pred HHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCC-ChHHHHHHHHHHHhCCeEEEecCC-----CCeEeCCHHHHHH
Confidence 4789999999999999874359999999999999641 247999999999999999988 3 4899999999999
Q ss_pred ccCCCCCChhhHHHhhcChhhhhhhhhHHHhHh-cCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhc
Q 046375 79 VTGSDSNQLGPVFLVENHPYMVNSWHFLSQCVK-EGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAG 157 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~ 157 (276)
+++++. ++++++.++.++..++.|.+|+++++ +|.++|...+|.++|+++.++|+..+.|+++|........+. ++.
T Consensus 104 ~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~ 181 (352)
T 1fp2_A 104 VRGSDL-CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRD 181 (352)
T ss_dssp STTSSS-CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHT
T ss_pred hCCCCc-cHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHh
Confidence 988876 88888877666677889999999999 777778888898999999999999999999999887766666 777
Q ss_pred cccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCCCCccEEEEcccccCCCc
Q 046375 158 YKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTIPNADALLLKWVLHNWSD 237 (276)
Q Consensus 158 ~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~l~~vlh~~~~ 237 (276)
+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..+|+++.+|+++++|++|+|++++++|+|++
T Consensus 182 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 182 CDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTD 261 (352)
T ss_dssp CHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred cccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCH
Confidence 72127788999999999999999999999999999999999999998866799999999998888999999999999998
Q ss_pred ccc-----------------------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 238 EAC-----------------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 238 ~~~-----------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+++ +||.+||.++|+++||+.+++.+.
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 341 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPL 341 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEec
Confidence 763 045789999999999999999988
Q ss_pred CCccEEEEEec
Q 046375 265 PALQCIIESYP 275 (276)
Q Consensus 265 ~~~~~vi~a~~ 275 (276)
++..+||+++|
T Consensus 342 ~~~~~vie~~~ 352 (352)
T 1fp2_A 342 TGFLSLIEIYP 352 (352)
T ss_dssp ETTEEEEEEEC
T ss_pred CCCcEEEEEeC
Confidence 88889999986
No 10
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=2.2e-41 Score=307.95 Aligned_cols=269 Identities=33% Similarity=0.596 Sum_probs=222.1
Q ss_pred ChHhHHHHHcChhhhhhhCCCC---CCHHHHHhhcCC---CCCCCcchHHHHHHHHhcCCceeec----CCCCCC--CCe
Q 046375 1 SLALKCAIELRIPDIIHSHGGP---ITSSQIASSIDS---PSSPEISYIERIMRLLGHKNIFAAQ----HPSDGG--EPL 68 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~---~t~~eLA~~~~~---~~~~~~~~l~~lL~~L~~~Gll~~~----~~~~~~--~~~ 68 (276)
+++|++|+++|||+.|.+.|+| +|++|||+++|+ +|. +.+.+.|||++|++.|+|++. +. | +++
T Consensus 38 ~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~-~~~~l~rlLr~L~~~gll~~~~~~~~~---g~~~~~ 113 (372)
T 1fp1_D 38 PAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD-LPNRLDRMLRLLASYSVLTSTTRTIED---GGAERV 113 (372)
T ss_dssp HHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTT-HHHHHHHHHHHHHHTTSEEEEEEECTT---SCEEEE
T ss_pred HHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCc-ChHHHHHHHHHHhhCCceEecccccCC---CCcCCe
Confidence 4789999999999999974226 999999999999 431 348999999999999999987 20 1 259
Q ss_pred EecCccccccccCCC-CCChhhHHHhhcChhhhhhhhhHHHhHhcC-chhhhhhhCCcchhhcccChHHHHHHHHHHHhh
Q 046375 69 YGLTHSSRWLVTGSD-SNQLGPVFLVENHPYMVNSWHFLSQCVKEG-GSAIEKAFGDAYIDLASKDQQFNKIFNEGMACN 146 (276)
Q Consensus 69 y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 146 (276)
|++|+.+.+|+++++ . ++++++.+..++..++.|.+|+++++++ .++|...+|.++|+++.++|+..+.|+++|...
T Consensus 114 y~~t~~s~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 192 (372)
T 1fp1_D 114 YGLSMVGKYLVPDESRG-YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 192 (372)
T ss_dssp EEECTTGGGGSTTCTTC-CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHhCCCCCC-CHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhh
Confidence 999999999988876 5 7888887766667788999999999998 666888888899999999999999999999988
Q ss_pred hhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCCCCccEE
Q 046375 147 AKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTIPNADAL 226 (276)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~p~~D~i 226 (276)
+....+.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+++++|.+|+|
T Consensus 193 ~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v 271 (372)
T 1fp1_D 193 CATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAM 271 (372)
T ss_dssp HHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEE
T ss_pred hHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEE
Confidence 7777788888874 367789999999999999999999999999999999999999988778999999999988889999
Q ss_pred EEcccccCCCcccc---------------------------------------------------ccCHHHHHHhHhhCC
Q 046375 227 LLKWVLHNWSDEAC---------------------------------------------------ERTELEWKNIPEKGG 255 (276)
Q Consensus 227 ~l~~vlh~~~~~~~---------------------------------------------------~rt~~e~~~ll~~aG 255 (276)
+++++||+|+++++ +||.+||.++|+++|
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 351 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSG 351 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCC
Confidence 99999999999874 147899999999999
Q ss_pred CCceEEEec-CCccEEEEEec
Q 046375 256 SPRYRIIKI-PALQCIIESYP 275 (276)
Q Consensus 256 f~~~~~~~~-~~~~~vi~a~~ 275 (276)
|+++++.+. ++..+|||++|
T Consensus 352 f~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 352 FSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp CSEEEEEEEETTTEEEEEEEC
T ss_pred CceEEEEEcCCCCeEEEEEeC
Confidence 999999884 55259999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=7.3e-41 Score=303.70 Aligned_cols=256 Identities=13% Similarity=0.113 Sum_probs=215.4
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
+++|++++++|||+.|+..++|+|++|||+++|++| +.+.|||++|++.|+|++.+ ++|++|+.+++|++
T Consensus 29 ~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~----~~l~rlLr~l~~~g~l~~~~------~~y~~t~~s~~L~~ 98 (363)
T 3dp7_A 29 FQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTR----YAAQVLLEASLTIGTILLEE------DRYVLAKAGWFLLN 98 (363)
T ss_dssp HHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEEET------TEEEECHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCH----HHHHHHHHHHhhCCCeEecC------CEEecccchHHhhC
Confidence 478999999999999997447999999999999977 99999999999999999865 89999999998887
Q ss_pred CCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhC--CcchhhcccChHHHHH----HHHHHHhhhhhhHHHH
Q 046375 81 GSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFG--DAYIDLASKDQQFNKI----FNEGMACNAKFLTREI 154 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~~~~----f~~~m~~~~~~~~~~~ 154 (276)
+++. ..++.+. .+..++.|.+|+++++++.+++...+| .++|+++.++|+..+. |+.+|.... ...+
T Consensus 99 ~~~~---~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~ 171 (363)
T 3dp7_A 99 DKMA---RVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKA 171 (363)
T ss_dssp CHHH---HHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHH
T ss_pred CCcc---cchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHH
Confidence 7642 2233322 356789999999999999888777777 5899999999987763 666665432 2344
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC---CCC-Cc
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH---TIP-NA 223 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~---~~p-~~ 223 (276)
+..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++ |+| ++
T Consensus 172 l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~ 249 (363)
T 3dp7_A 172 LEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGF 249 (363)
T ss_dssp HHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCC
T ss_pred HHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCc
Confidence 55444 35778999999999999999999999999999999999988765 3689999999998 477 59
Q ss_pred cEEEEcccccCCCcccc----------------------------------------------------ccCHHHHHHhH
Q 046375 224 DALLLKWVLHNWSDEAC----------------------------------------------------ERTELEWKNIP 251 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~----------------------------------------------------~rt~~e~~~ll 251 (276)
|+|++++++|+|+++++ +||.+||.++|
T Consensus 250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 329 (363)
T 3dp7_A 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCI 329 (363)
T ss_dssp SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHH
T ss_pred CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHH
Confidence 99999999999999875 24899999999
Q ss_pred hhCCCCceEEEecC-CccEEEEEec
Q 046375 252 EKGGSPRYRIIKIP-ALQCIIESYP 275 (276)
Q Consensus 252 ~~aGf~~~~~~~~~-~~~~vi~a~~ 275 (276)
+++||+++++.+.. ...++|+++|
T Consensus 330 ~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 330 ENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HHcCCeEEEEEeCCCCCceEEEEee
Confidence 99999999998764 4599999987
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=1.7e-39 Score=295.25 Aligned_cols=261 Identities=25% Similarity=0.370 Sum_probs=231.9
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC--eEecCcccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP--LYGLTHSSRWL 78 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~--~y~~t~~~~~l 78 (276)
+++|++++++|||+.|.. +|.|++|||+++|+++ +.+.|||++|++.|+|.+.+ ++ .|++|+.+.+|
T Consensus 30 ~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~----~~l~r~Lr~L~~~Gll~~~~-----~~~~~y~~t~~s~~l 98 (374)
T 1qzz_A 30 PMALRVAATLRLVDHLLA--GADTLAGLADRTDTHP----QALSRLVRHLTVVGVLEGGE-----KQGRPLRPTRLGMLL 98 (374)
T ss_dssp HHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCH----HHHHHHHHHHHHTTSEECCC-----C-CCCCEECTTGGGG
T ss_pred HHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCH----HHHHHHHHHHhhCCCEEEeC-----CCCeEEEEChHHHhh
Confidence 378999999999999975 7999999999999977 99999999999999999865 36 99999999999
Q ss_pred ccCCCCCChhhHHHhhcChhhh-hhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhc
Q 046375 79 VTGSDSNQLGPVFLVENHPYMV-NSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAG 157 (276)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~ 157 (276)
.++++. +++.++.+..++..+ ..|.+|+++++++.++|...+|.++|+++.++|+..+.|+++|........+.+++.
T Consensus 99 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (374)
T 1qzz_A 99 ADGHPA-QQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADA 177 (374)
T ss_dssp STTCTT-CHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHT
T ss_pred cCCCcc-cHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHh
Confidence 888776 788887765444456 899999999999988888888989999999999999999999998877777888998
Q ss_pred cccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCCCCCC-ccEEEEc
Q 046375 158 YKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFHTIPN-ADALLLK 229 (276)
Q Consensus 158 ~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~~~p~-~D~i~l~ 229 (276)
++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++|. +|+|+++
T Consensus 178 ~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~ 255 (374)
T 1qzz_A 178 YD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS 255 (374)
T ss_dssp SC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred CC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEe
Confidence 88 78889999999999999999999999999999999999988765 35899999999988875 9999999
Q ss_pred ccccCCCcccc--------------------c-----------------------------cCHHHHHHhHhhCCCCceE
Q 046375 230 WVLHNWSDEAC--------------------E-----------------------------RTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 230 ~vlh~~~~~~~--------------------~-----------------------------rt~~e~~~ll~~aGf~~~~ 260 (276)
+++|+|+++++ + ++.++|.++|+++||++++
T Consensus 256 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 335 (374)
T 1qzz_A 256 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 335 (374)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEE
Confidence 99999998863 1 4789999999999999999
Q ss_pred EEecCCcc-----EEEEEec
Q 046375 261 IIKIPALQ-----CIIESYP 275 (276)
Q Consensus 261 ~~~~~~~~-----~vi~a~~ 275 (276)
+.+.++.. ++|+++|
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 336 ERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp EEEECCSSCSSCEEEEEEEE
T ss_pred EEECCCCcccCCcEEEEEEE
Confidence 99887777 9999976
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=3.5e-39 Score=291.80 Aligned_cols=261 Identities=22% Similarity=0.397 Sum_probs=232.0
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
+++|++++++|||+.|.. +|.|++|||+++|+++ +.+.|+|++|++.|+|.+.+ +++|++|+.+.+|++
T Consensus 33 ~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~----~~l~r~L~~L~~~g~~~~~~-----~g~y~~t~~s~~l~~ 101 (360)
T 1tw3_A 33 PMVVRTAATLRLVDHILA--GARTVKALAARTDTRP----EALLRLIRHLVAIGLLEEDA-----PGEFVPTEVGELLAD 101 (360)
T ss_dssp HHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE-----TTEEEECTTGGGGST
T ss_pred HHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCH----HHHHHHHHHHHHCCCEEecC-----CCeEEeCHHHHHHhc
Confidence 378999999999999975 7999999999999977 99999999999999999966 489999999999998
Q ss_pred CCCCCChhhHHHhhcChh-hhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccc
Q 046375 81 GSDSNQLGPVFLVENHPY-MVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYK 159 (276)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 159 (276)
+++. +++.++.+..++. .+..|.+|.+.++++.+.|...+|.++|+++.++|+..+.|.++|........+.+++.++
T Consensus 102 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~ 180 (360)
T 1tw3_A 102 DHPA-AQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD 180 (360)
T ss_dssp TSTT-CHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC
T ss_pred CCch-hHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC
Confidence 8876 7888776654333 5689999999999998888888888999999999999999999999887777788899888
Q ss_pred cCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCCCCCC-ccEEEEccc
Q 046375 160 HGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFHTIPN-ADALLLKWV 231 (276)
Q Consensus 160 ~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~~~p~-~D~i~l~~v 231 (276)
+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++++|. +|+|+++++
T Consensus 181 --~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v 258 (360)
T 1tw3_A 181 --WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFV 258 (360)
T ss_dssp --CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESC
T ss_pred --CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccc
Confidence 78889999999999999999999999999999999888887765 35899999999988875 999999999
Q ss_pred ccCCCcccc------------------------------------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 232 LHNWSDEAC------------------------------------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 232 lh~~~~~~~------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
+|+|+++++ +++.++|.++|+++||+++++.+
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 999998864 14789999999999999999988
Q ss_pred cCCc-----cEEEEEec
Q 046375 264 IPAL-----QCIIESYP 275 (276)
Q Consensus 264 ~~~~-----~~vi~a~~ 275 (276)
.++. .++|+++|
T Consensus 339 ~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 339 LPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp EECSSSSCEEEEEEEEE
T ss_pred CCCCcccCccEEEEEEe
Confidence 7665 79999987
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=3e-38 Score=282.66 Aligned_cols=254 Identities=20% Similarity=0.216 Sum_probs=223.8
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc-cccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS-RWLV 79 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~-~~l~ 79 (276)
+++|++|+++|||+.|.+ +|.|++|||+++|+++ +.+.|||++|++.|+|++.+ ++|++|+.+ .++.
T Consensus 20 ~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~----~~l~r~L~~L~~~g~l~~~~------~~y~~t~~~~~~l~ 87 (335)
T 2r3s_A 20 SAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSE----RGMRMLCDYLVIIGFMTKQA------EGYRLTSDSAMFLD 87 (335)
T ss_dssp HHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECHHHHHHTC
T ss_pred HHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCc----hHHHHHHHHHHhcCCeEecC------CEEecCHHHHHHhc
Confidence 478999999999999997 7999999999999977 99999999999999999865 899999999 6888
Q ss_pred cCCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccc
Q 046375 80 TGSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYK 159 (276)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 159 (276)
++++. ++++++.+..++..++.|.+|+++++++.+.|. + |+++.++++..+.|.+.|........+.+++.++
T Consensus 88 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (335)
T 2r3s_A 88 RQSKF-YVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN 160 (335)
T ss_dssp TTSTT-CCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT
T ss_pred cCCcH-HHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc
Confidence 87776 788888776555678899999999999876543 2 7888889999999999999887777788888888
Q ss_pred cCC--CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEE
Q 046375 160 HGF--DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLL 228 (276)
Q Consensus 160 ~~~--~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l 228 (276)
+ .+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+||+++.+|+++ ++|+ +|+|++
T Consensus 161 --~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~ 238 (335)
T 2r3s_A 161 --ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLL 238 (335)
T ss_dssp --C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEE
T ss_pred --cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEE
Confidence 6 7889999999999999999999999999999999988887765 3589999999998 6775 999999
Q ss_pred cccccCCCcccc-------------------------------------------------ccCHHHHHHhHhhCCCCce
Q 046375 229 KWVLHNWSDEAC-------------------------------------------------ERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 229 ~~vlh~~~~~~~-------------------------------------------------~rt~~e~~~ll~~aGf~~~ 259 (276)
++++|+|+++++ +++.++|.++|+++||+.+
T Consensus 239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~ 318 (335)
T 2r3s_A 239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318 (335)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEE
T ss_pred cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCee
Confidence 999999988754 1469999999999999999
Q ss_pred EEEecCCccEEEEEec
Q 046375 260 RIIKIPALQCIIESYP 275 (276)
Q Consensus 260 ~~~~~~~~~~vi~a~~ 275 (276)
++.+.++..++|+++.
T Consensus 319 ~~~~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 319 QLHSLPTTQQQVIVAY 334 (335)
T ss_dssp EEECCTTSSSEEEEEE
T ss_pred eEEECCCCceeEEEec
Confidence 9999888788888764
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=5.8e-38 Score=284.01 Aligned_cols=248 Identities=19% Similarity=0.298 Sum_probs=219.8
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc-ccccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS-SRWLV 79 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~-~~~l~ 79 (276)
+++|++|+++|||+.|.+ +|.|++|||+++|+++ +.+.|||++|++.|+|++.+ ++|++|+. +.++.
T Consensus 45 ~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~----~~l~rlLr~L~~~gll~~~~------~~y~~t~~~~~~l~ 112 (359)
T 1x19_A 45 FSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVP----PRLEMLLETLRQMRVINLED------GKWSLTEFADYMFS 112 (359)
T ss_dssp HHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECHHHHHHSS
T ss_pred HHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcCh----HHHHHHHHHHHhCCCeEeeC------CeEecCHHHHHHhc
Confidence 468999999999999997 7999999999999977 99999999999999999987 79999996 45888
Q ss_pred cCCC---CCChhhHHHhhcChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChH---HHHHHHHHHHhhhh-hhHH
Q 046375 80 TGSD---SNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQ---FNKIFNEGMACNAK-FLTR 152 (276)
Q Consensus 80 ~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~~ 152 (276)
++++ . ++++++.+. .+..++.|.+|+++++++.+ |+++.++|+ ..+.|.++|..... ...+
T Consensus 113 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~ 180 (359)
T 1x19_A 113 PTPKEPNL-HQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQ 180 (359)
T ss_dssp SSCSBTTB-CCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCccc-cHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHHHHHHHHHHHhccchhHH
Confidence 8776 5 788877665 35678899999999998664 677778888 89999999998887 7788
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCCcc
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPNAD 224 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~~D 224 (276)
.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++ ++|++|
T Consensus 181 ~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D 258 (359)
T 1x19_A 181 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 258 (359)
T ss_dssp HHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCS
T ss_pred HHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCC
Confidence 8999988 78889999999999999999999999999999999999988764 4679999999998 677789
Q ss_pred EEEEcccccCCCcccc--------------------c------------------------------cCHHHHHHhHhhC
Q 046375 225 ALLLKWVLHNWSDEAC--------------------E------------------------------RTELEWKNIPEKG 254 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~--------------------~------------------------------rt~~e~~~ll~~a 254 (276)
+|++++++|+|+++++ + ++.++|.++|+++
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred EEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 9999999999998654 1 6889999999999
Q ss_pred CCCceEEEecCCccEEEEEec
Q 046375 255 GSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 255 Gf~~~~~~~~~~~~~vi~a~~ 275 (276)
||+++++.+.+ ..++|+++|
T Consensus 339 Gf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 339 GYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp TCEEEEEEEET-TEEEEEEEC
T ss_pred CCceEEEEecC-CceEEEEeC
Confidence 99999998887 789999987
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=3.4e-37 Score=278.01 Aligned_cols=248 Identities=15% Similarity=0.235 Sum_probs=210.2
Q ss_pred ChHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccc
Q 046375 1 SLALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLV 79 (276)
Q Consensus 1 s~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~ 79 (276)
+++|++|+++|||++|. +|.|++|||+++|++| +.+.|||++|++.|+|++.+ ++|++|+.+. ++.
T Consensus 38 ~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~----~~l~rlLr~L~~~gll~~~~------~~y~~t~~s~~~l~ 104 (352)
T 3mcz_A 38 SAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVE----GKAAILLHALAALGLLTKEG------DAFRNTALTERYLT 104 (352)
T ss_dssp HHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECHHHHHHHS
T ss_pred HHHHHHHHHCChHHHhC---CCCCHHHHHHHhCcCh----HHHHHHHHHHHHCCCeEecC------CeeecCHHHHhhcc
Confidence 46899999999999997 4999999999999977 99999999999999999987 7999999997 677
Q ss_pred cCCCCCChhhHHHhhcChhhhhhhhhHHHhHhcCchh-hhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhcc
Q 046375 80 TGSDSNQLGPVFLVENHPYMVNSWHFLSQCVKEGGSA-IEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGY 158 (276)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~ 158 (276)
++.+. +++.++.+. ...++.|.+|++++++|.+. |... .++.++|+..+.|.++|...... ...+++.+
T Consensus 105 ~~~~~-~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~ 174 (352)
T 3mcz_A 105 TTSAD-YIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSEL 174 (352)
T ss_dssp TTCTT-CCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTC
T ss_pred CCChh-hHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhC
Confidence 77766 787776553 34678999999999998765 4332 12357899999999999874332 34788888
Q ss_pred ccCCCC-CceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCCC---CCC-ccEE
Q 046375 159 KHGFDS-LKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFHT---IPN-ADAL 226 (276)
Q Consensus 159 ~~~~~~-~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~~---~p~-~D~i 226 (276)
+ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|++++ .|+ +|+|
T Consensus 175 ~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 252 (352)
T 3mcz_A 175 G--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVV 252 (352)
T ss_dssp G--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEE
T ss_pred C--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEE
Confidence 8 766 89999999999999999999999999999999998887764 46899999999983 564 9999
Q ss_pred EEcccccCCCcccc-------------------------------------------------ccCHHHHHHhHhhCCCC
Q 046375 227 LLKWVLHNWSDEAC-------------------------------------------------ERTELEWKNIPEKGGSP 257 (276)
Q Consensus 227 ~l~~vlh~~~~~~~-------------------------------------------------~rt~~e~~~ll~~aGf~ 257 (276)
++++++|+|+++++ +||.++|.++|+++||+
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 332 (352)
T 3mcz_A 253 MLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLA 332 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCE
T ss_pred EEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCc
Confidence 99999999998755 36899999999999999
Q ss_pred ceEEEecCCccEEEEEec
Q 046375 258 RYRIIKIPALQCIIESYP 275 (276)
Q Consensus 258 ~~~~~~~~~~~~vi~a~~ 275 (276)
+++.. .+...+++++|
T Consensus 333 ~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 333 VGERS--IGRYTLLIGQR 348 (352)
T ss_dssp EEEEE--ETTEEEEEEEC
T ss_pred eeeec--cCceEEEEEec
Confidence 99854 35588888876
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.64 E-value=1.5e-15 Score=131.26 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=94.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCCccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY--PHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPNADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~~D~i~l~~ 230 (276)
.+...+|||||||+|.++..+++++ |+++++++|+ |.+++.+++ ..+|+++.+|+.+ |++++|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4567899999999999999999985 6789999998 999988765 4689999999988 777899999999
Q ss_pred cccCCCcccc----------------------------------------------------------------ccCHHH
Q 046375 231 VLHNWSDEAC----------------------------------------------------------------ERTELE 246 (276)
Q Consensus 231 vlh~~~~~~~----------------------------------------------------------------~rt~~e 246 (276)
+||++++++. ..|.++
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~ 227 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 227 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHH
Confidence 9999987653 026789
Q ss_pred HHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 247 WKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 247 ~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
+.++|+++||+.+++.-..-..+.+.|.|
T Consensus 228 ~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 228 HKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 99999999999998865433344456665
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.59 E-value=1.9e-14 Score=121.36 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=100.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC-Ccc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP-NAD 224 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p-~~D 224 (276)
..++..+. ...+..+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+++++.+|+.+ +++ .+|
T Consensus 33 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD 111 (234)
T 3dtn_A 33 GVSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYD 111 (234)
T ss_dssp HHHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEE
T ss_pred HHHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCce
Confidence 34444443 134568999999999999999999999999999999 888877765 3489999999988 555 499
Q ss_pred EEEEcccccCCCcccc---------------------------------------------------------------c
Q 046375 225 ALLLKWVLHNWSDEAC---------------------------------------------------------------E 241 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~---------------------------------------------------------------~ 241 (276)
+|++..++|++++++. .
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 9999999999987663 0
Q ss_pred cCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 242 RTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 242 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
++.++|.++|+++||+.+++.......+++.+.|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 2678999999999999999987766677776655
No 19
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.53 E-value=5.1e-14 Score=117.45 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=101.8
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p- 221 (276)
..++..++ .....+|||||||+|.++..+++.. |..+++++|. +.+++.+++ ..+++++.+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 44556555 6678899999999999999999997 8889999998 888887765 3589999999987 555
Q ss_pred -CccEEEEcccccCCCcccc---------------------------------ccCHHHHHHhHhhCCCCceEEEecCCc
Q 046375 222 -NADALLLKWVLHNWSDEAC---------------------------------ERTELEWKNIPEKGGSPRYRIIKIPAL 267 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~---------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~ 267 (276)
.+|+|+++.++|++++... ..+.++|.++++++||+++++...++.
T Consensus 105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTT
T ss_pred CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCc
Confidence 3999999999999976554 136899999999999999999888776
Q ss_pred cEEEEEec
Q 046375 268 QCIIESYP 275 (276)
Q Consensus 268 ~~vi~a~~ 275 (276)
...+.++|
T Consensus 185 ~~~~~~~k 192 (219)
T 3dh0_A 185 CFGVYAMI 192 (219)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEe
Confidence 66666665
No 20
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.51 E-value=1.1e-13 Score=125.39 Aligned_cols=217 Identities=10% Similarity=-0.020 Sum_probs=136.9
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccccCCCCCChhh
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLVTGSDSNQLGP 89 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~ 89 (276)
++|..| . +|.|+.|||+.+|+++ +.+++||+.|.+.|+++..+ + |++|+.+. ++...+.. +..+
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~~~----~~v~~~L~~l~~~gll~~~~------~-~~lt~~~~~~l~~~~~~-~~~~ 111 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEEPL----PLVVAILESLNELGYVTFED------G-VKLTEKGEELVAEYGIG-KRYD 111 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEECSS------S-SEECHHHHHHHHHHTCC-CCCC
T ss_pred HHHHHh-c--CCCCHHHHHHHhCCCh----HHHHHHHHHHhhCCcEEECC------C-EEECHHHHHHHHhcCcc-cccc
Confidence 779988 5 6899999999999987 99999999999999998854 5 99999765 44442211 1111
Q ss_pred HHH-hhc-----ChhhhhhhhhHHHhHhcCchhhhhhhCCcchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccccCCC
Q 046375 90 VFL-VEN-----HPYMVNSWHFLSQCVKEGGSAIEKAFGDAYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYKHGFD 163 (276)
Q Consensus 90 ~~~-~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 163 (276)
.+. ... ...+...|..+.+.++....+ ...|+.....++.. ..+.+ ..... . ..
T Consensus 112 ~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~--~~~~l---------~~~~~-~--~~ 171 (373)
T 2qm3_A 112 FTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP------LHEFDQAYVTPETT--VARVI---------LMHTR-G--DL 171 (373)
T ss_dssp ------------CGGGHHHHHHHHHHHTTCCCC------CGGGTCCCBCHHHH--HHHHH---------HHHHT-T--CS
T ss_pred ccchhhcCCCcchhhhHHHHHHHHHHHhcCCcc------chhcCCeecCHHHH--HHHHH---------HHhhc-C--CC
Confidence 110 000 011122345555555533211 01111100112111 11111 00111 1 22
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC-----CccEEEEccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP-----NADALLLKWV 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p-----~~D~i~l~~v 231 (276)
...+||||| |+|.++..+++..|+.+++++|+ |.+++.+++ .+||+++.+|+.+++| .||+|+++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 468999999 99999999999999899999999 999988876 2389999999988443 3999999765
Q ss_pred ccCCCcccc----------------------ccCH---HHHHHhHh-hCCCCceEEEe
Q 046375 232 LHNWSDEAC----------------------ERTE---LEWKNIPE-KGGSPRYRIIK 263 (276)
Q Consensus 232 lh~~~~~~~----------------------~rt~---~e~~~ll~-~aGf~~~~~~~ 263 (276)
+|....... +.+. .++.+.+. ..||....+.+
T Consensus 251 ~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 308 (373)
T 2qm3_A 251 ETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDIIR 308 (373)
T ss_dssp SSHHHHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred CchHHHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhhh
Confidence 543211111 1345 56677787 88998766544
No 21
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.50 E-value=5.2e-14 Score=116.87 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=93.8
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p- 221 (276)
..++..++ .... +|||||||+|.++..++++ |+.+++++|+ |.+++.+++ .++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 34445554 3444 9999999999999999999 8889999999 888887765 3589999999988 666
Q ss_pred -CccEEEEcccccCCCcccc--------------------------------------------------ccCHHHHHHh
Q 046375 222 -NADALLLKWVLHNWSDEAC--------------------------------------------------ERTELEWKNI 250 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~--------------------------------------------------~rt~~e~~~l 250 (276)
.+|+|++..++|++++... .++.++|.++
T Consensus 110 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNV 189 (219)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHH
T ss_pred ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHH
Confidence 3999999999999976554 0256999999
Q ss_pred HhhCCCCceEEEecCCccEEEE
Q 046375 251 PEKGGSPRYRIIKIPALQCIIE 272 (276)
Q Consensus 251 l~~aGf~~~~~~~~~~~~~vi~ 272 (276)
|+++||+.+++.......-++.
T Consensus 190 l~~aGf~~v~~~~~~~~~~~~~ 211 (219)
T 3dlc_A 190 LDEIGISSYEIILGDEGFWIII 211 (219)
T ss_dssp HHHHTCSSEEEEEETTEEEEEE
T ss_pred HHHcCCCeEEEEecCCceEEEE
Confidence 9999999999987755444433
No 22
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.49 E-value=8.9e-14 Score=116.41 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=96.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP-- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p-- 221 (276)
.+.+++.++ ...+|||||||+|.++..+++..| +++++|+ |.+++.+++ ..+++++.+|+.+ +++
T Consensus 29 ~~~l~~~~~----~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (227)
T 1ve3_A 29 EPLLMKYMK----KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK 102 (227)
T ss_dssp HHHHHHSCC----SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTT
T ss_pred HHHHHHhcC----CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCC
Confidence 344445443 478999999999999999999987 8999999 888888765 3789999999988 555
Q ss_pred CccEEEEcccccCCCcccc-----------------------------c----------------------cC-------
Q 046375 222 NADALLLKWVLHNWSDEAC-----------------------------E----------------------RT------- 243 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~-----------------------------~----------------------rt------- 243 (276)
.+|+|++..++|.+..++. + ++
T Consensus 103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKS 182 (227)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC--
T ss_pred cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEecc
Confidence 4999999999776654332 0 00
Q ss_pred ------------HHHHHHhHhhCCCCceEEEecCCccEEEEEecC
Q 046375 244 ------------ELEWKNIPEKGGSPRYRIIKIPALQCIIESYPE 276 (276)
Q Consensus 244 ------------~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~~ 276 (276)
..+|.++|+++||+.+++.+.++...+|+.+|.
T Consensus 183 ~~~~~~~~~~~w~~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~~ 227 (227)
T 1ve3_A 183 EQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227 (227)
T ss_dssp ---CCEEEEECCCHHHHHHHHTTTEEEEEEEEETTTEEEEEEEEC
T ss_pred chhhheeehhhhchHHHHHHHHHhhhHHHHHHhCCceeEEeeCCC
Confidence 058999999999999999999888899999873
No 23
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.45 E-value=3.1e-13 Score=116.03 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=93.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCCC-ccEEEEcc-cccCCCc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIPN-ADALLLKW-VLHNWSD 237 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p~-~D~i~l~~-vlh~~~~ 237 (276)
++..+|||||||+|.++..++++.+ +++++|+ |.+++.+++ ..+++++.+|+.+ ++++ +|+|++.. ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 4668999999999999999999854 7899999 899988877 5689999999988 5554 99999998 9999864
Q ss_pred cc-c-------------------c--------------------------------------------------------
Q 046375 238 EA-C-------------------E-------------------------------------------------------- 241 (276)
Q Consensus 238 ~~-~-------------------~-------------------------------------------------------- 241 (276)
.+ . .
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 22 1 0
Q ss_pred --------cCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 242 --------RTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 242 --------rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
.|.+||.++|+++||+++++....+...+++++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 1589999999999999999977777788888876
No 24
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.41 E-value=3.2e-12 Score=106.09 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=69.2
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCCCCC--CccEE
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFHTIP--NADAL 226 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~~~p--~~D~i 226 (276)
..++..+. ......+|||||||+|.++..+++. +.+++++|+ |.+++.+++ ..+++++.+|+.+.++ .+|+|
T Consensus 35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v 111 (218)
T 3ou2_A 35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV 111 (218)
T ss_dssp HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence 34444443 1445679999999999999999998 668999998 888888876 4789999999988544 49999
Q ss_pred EEcccccCCCcc
Q 046375 227 LLKWVLHNWSDE 238 (276)
Q Consensus 227 ~l~~vlh~~~~~ 238 (276)
++++++|+++++
T Consensus 112 ~~~~~l~~~~~~ 123 (218)
T 3ou2_A 112 FFAHWLAHVPDD 123 (218)
T ss_dssp EEESCGGGSCHH
T ss_pred EEechhhcCCHH
Confidence 999999999986
No 25
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.40 E-value=6.5e-13 Score=113.32 Aligned_cols=110 Identities=18% Similarity=0.107 Sum_probs=91.5
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCC--Ccc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIP--NAD 224 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p--~~D 224 (276)
+.++..++ .....+|||||||+|.++..+++..+. +++++|+ |.+++.+++ ..+++++.+|+.+ +++ .+|
T Consensus 34 ~~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 110 (253)
T 3g5l_A 34 HELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN 110 (253)
T ss_dssp HHHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence 44555555 456789999999999999999999765 8999999 888888766 4789999999987 665 399
Q ss_pred EEEEcccccCCCcccc--------------------------c-------------------------------------
Q 046375 225 ALLLKWVLHNWSDEAC--------------------------E------------------------------------- 241 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~--------------------------~------------------------------------- 241 (276)
+|++..++|++++... .
T Consensus 111 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 111 VVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 9999999999976543 0
Q ss_pred ---cCHHHHHHhHhhCCCCceEEEec
Q 046375 242 ---RTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 242 ---rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+|.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 18899999999999999998754
No 26
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.39 E-value=8.8e-13 Score=113.03 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=91.2
Q ss_pred hHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC
Q 046375 150 LTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p 221 (276)
....++..+. .....+|||||||+|.++..++++.+ +++++|+ |.+++.+++ .++++++.+|+.+ |+|
T Consensus 25 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 25 DLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp CHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 3455666666 56788999999999999999999986 8999998 888887765 2679999999988 776
Q ss_pred --CccEEEEcccccCCCcccc---------------------------------------------ccCHHHHHHhHhhC
Q 046375 222 --NADALLLKWVLHNWSDEAC---------------------------------------------ERTELEWKNIPEKG 254 (276)
Q Consensus 222 --~~D~i~l~~vlh~~~~~~~---------------------------------------------~rt~~e~~~ll~~a 254 (276)
.+|+|++++++|++++... ..+..+|.++|+++
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 180 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEA 180 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHH
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHC
Confidence 3999999999999987654 13678999999999
Q ss_pred CCCceEEEec
Q 046375 255 GSPRYRIIKI 264 (276)
Q Consensus 255 Gf~~~~~~~~ 264 (276)
||+++.+...
T Consensus 181 Gf~~~~~~~~ 190 (260)
T 1vl5_A 181 GFELEELHCF 190 (260)
T ss_dssp TCEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 9998776543
No 27
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.39 E-value=2.7e-12 Score=110.60 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=92.8
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p 221 (276)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ |++
T Consensus 50 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 345666666 6678899999999999999999987 689999999 888877654 3589999999988 665
Q ss_pred --CccEEEEcccccCCCcccc---------------------------------------------ccCHHHHHHhHhhC
Q 046375 222 --NADALLLKWVLHNWSDEAC---------------------------------------------ERTELEWKNIPEKG 254 (276)
Q Consensus 222 --~~D~i~l~~vlh~~~~~~~---------------------------------------------~rt~~e~~~ll~~a 254 (276)
.+|+|++..++|++++... ..+.++|.++|+++
T Consensus 127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 206 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQA 206 (273)
T ss_dssp TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHT
T ss_pred CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHc
Confidence 3999999999999987554 13679999999999
Q ss_pred CCCceEEEec
Q 046375 255 GSPRYRIIKI 264 (276)
Q Consensus 255 Gf~~~~~~~~ 264 (276)
||+++++...
T Consensus 207 Gf~~~~~~~~ 216 (273)
T 3bus_A 207 ELVVTSTVDI 216 (273)
T ss_dssp TCEEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 9999988765
No 28
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.39 E-value=1.2e-12 Score=109.19 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=93.6
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-C-CCeEEEEccCCC-CCC-CccEEE
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-Y-DGVTHVSGDMFH-TIP-NADALL 227 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~-~ri~~~~~d~~~-~~p-~~D~i~ 227 (276)
.++..+. .....+|||||||+|.++..++++ +.+++++|. |.+++.+++ . .+++++.+|+.+ +++ .+|+|+
T Consensus 36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 3444444 346789999999999999999997 678999998 888888776 3 489999999988 555 499999
Q ss_pred EcccccCCCcccc-----------------------------------------------------ccCHHHHHHhHhhC
Q 046375 228 LKWVLHNWSDEAC-----------------------------------------------------ERTELEWKNIPEKG 254 (276)
Q Consensus 228 l~~vlh~~~~~~~-----------------------------------------------------~rt~~e~~~ll~~a 254 (276)
+.+++|++++.+. -.+.++|.++|+++
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHT
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHC
Confidence 9999999998653 02679999999999
Q ss_pred CCCceEEEecCCccEEEEEec
Q 046375 255 GSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 255 Gf~~~~~~~~~~~~~vi~a~~ 275 (276)
||+++.+... +..-++++.|
T Consensus 192 Gf~v~~~~~~-~~~w~~~~~~ 211 (220)
T 3hnr_A 192 GFHVTFTRLN-HFVWVMEATK 211 (220)
T ss_dssp TEEEEEEECS-SSEEEEEEEE
T ss_pred CCEEEEeecc-ceEEEEeehh
Confidence 9987766553 5555666554
No 29
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.38 E-value=2.7e-12 Score=109.45 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=90.0
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p- 221 (276)
..++..++ .....+|||||||+|.++..+++.+ +.+++++|+ |.+++.+++ .++++++.+|+.+ +++
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 44555555 6677899999999999999999998 678999999 888887765 3689999999988 444
Q ss_pred CccEEEEcccccCCCcccc------------------------------------------ccCHHHHHHhHhhCCCCce
Q 046375 222 NADALLLKWVLHNWSDEAC------------------------------------------ERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~------------------------------------------~rt~~e~~~ll~~aGf~~~ 259 (276)
.||+|++..++|++++... ..+..+|.++|+++||+++
T Consensus 103 ~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred CCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence 4999999999999976443 0256899999999999998
Q ss_pred EEEec
Q 046375 260 RIIKI 264 (276)
Q Consensus 260 ~~~~~ 264 (276)
++...
T Consensus 183 ~~~~~ 187 (256)
T 1nkv_A 183 EMVLA 187 (256)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 87543
No 30
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.38 E-value=1.7e-12 Score=111.12 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=93.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC--C
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP--N 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p--~ 222 (276)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ |.+++.+++ .++++++.+|+.+ |+| .
T Consensus 44 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 44 TKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTC
T ss_pred HHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCc
Confidence 345666666 6678899999999999999999988 789999998 888887765 2789999999988 665 3
Q ss_pred ccEEEEcccccCCCcccc--------------------------------------------ccCHHHHHHhHhhCCCCc
Q 046375 223 ADALLLKWVLHNWSDEAC--------------------------------------------ERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~--------------------------------------------~rt~~e~~~ll~~aGf~~ 258 (276)
+|+|++.+++|++++++. ..+.++|.++|+++||++
T Consensus 121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 200 (266)
T 3ujc_A 121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKN 200 (266)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEE
T ss_pred EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeE
Confidence 999999999999964433 137899999999999999
Q ss_pred eEEEec
Q 046375 259 YRIIKI 264 (276)
Q Consensus 259 ~~~~~~ 264 (276)
+++...
T Consensus 201 ~~~~~~ 206 (266)
T 3ujc_A 201 VVSKDL 206 (266)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988765
No 31
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.38 E-value=7.4e-13 Score=112.74 Aligned_cols=111 Identities=15% Similarity=0.258 Sum_probs=91.6
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC--Cc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP--NA 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p--~~ 223 (276)
..++..+. .....+|||||||+|.++..++++. ..+++++|. |.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 44556555 5567899999999999999999987 557999998 888887765 2689999999987 555 39
Q ss_pred cEEEEcccccCCCcccc--------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 224 DALLLKWVLHNWSDEAC--------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~--------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
|+|++.+++|++++++. .++.++|.++|+++||+++++....
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 99999999999986443 1478999999999999999987653
No 32
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.38 E-value=1.4e-12 Score=107.47 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=90.6
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEEcccccCCCccc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP--NADALLLKWVLHNWSDEA 239 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~~~ 239 (276)
..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+|+|++.+++|++++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999998 558999998 889988877 6789999999987 555 399999999999998544
Q ss_pred c--------------------------------------ccCHHHHHHhHhhCCCCceEEEecCC-ccEEEEEe
Q 046375 240 C--------------------------------------ERTELEWKNIPEKGGSPRYRIIKIPA-LQCIIESY 274 (276)
Q Consensus 240 ~--------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~a~ 274 (276)
. ..+.++|.++|+++||+++++...++ ++..|...
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~ 193 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAE 193 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhh
Confidence 3 14799999999999999999887744 55555543
No 33
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.38 E-value=4.7e-12 Score=111.66 Aligned_cols=124 Identities=11% Similarity=0.024 Sum_probs=96.4
Q ss_pred HHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCe
Q 046375 138 IFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGV 209 (276)
Q Consensus 138 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri 209 (276)
.|.+ +..........+++.++ .+....+|||||||+|.++..+++++ +.+++++|+ |.+++.+++ .+++
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v 169 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHV 169 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred HHhh-hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCce
Confidence 3433 33333333455666654 24567899999999999999999986 678999999 888887765 3589
Q ss_pred EEEEccCCC-CCC--CccEEEEcccccCCCcccc------------------------------------------ccCH
Q 046375 210 THVSGDMFH-TIP--NADALLLKWVLHNWSDEAC------------------------------------------ERTE 244 (276)
Q Consensus 210 ~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~~~~------------------------------------------~rt~ 244 (276)
+++.+|+.+ |++ .+|+|++..++|+++.... .++.
T Consensus 170 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 249 (312)
T 3vc1_A 170 RSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSR 249 (312)
T ss_dssp EEEECCTTSCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBH
T ss_pred EEEECChhcCCCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCH
Confidence 999999988 666 3999999999999953332 1378
Q ss_pred HHHHHhHhhCCCCceEEEec
Q 046375 245 LEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 245 ~e~~~ll~~aGf~~~~~~~~ 264 (276)
++|.++|+++||+++++...
T Consensus 250 ~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 250 REYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHHHHHHTTTEEEEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEeC
Confidence 99999999999999988765
No 34
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.37 E-value=2.3e-12 Score=112.54 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=91.3
Q ss_pred HHHHhcc----ccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-
Q 046375 152 REILAGY----KHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH- 218 (276)
Q Consensus 152 ~~~~~~~----~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~- 218 (276)
..++..+ + +....+|||||||+|.++..+++++ +.+++++|+ |.+++.+++ .++++++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 4455555 4 5677899999999999999999987 469999999 888877765 3689999999988
Q ss_pred CCC--CccEEEEcccccCCCcccc------------------------------------------ccCHHHHHHhHhhC
Q 046375 219 TIP--NADALLLKWVLHNWSDEAC------------------------------------------ERTELEWKNIPEKG 254 (276)
Q Consensus 219 ~~p--~~D~i~l~~vlh~~~~~~~------------------------------------------~rt~~e~~~ll~~a 254 (276)
|++ .+|+|++..++|++++... ..+..+|.++|+++
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 224 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKEC 224 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHT
T ss_pred CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 666 3999999999999987443 12789999999999
Q ss_pred CCCceEEEec
Q 046375 255 GSPRYRIIKI 264 (276)
Q Consensus 255 Gf~~~~~~~~ 264 (276)
||+++++...
T Consensus 225 Gf~~~~~~~~ 234 (297)
T 2o57_A 225 GLVTLRTFSR 234 (297)
T ss_dssp TEEEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 9999988765
No 35
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.36 E-value=7.7e-13 Score=116.35 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=93.6
Q ss_pred CCCCceEEEeeCCccHHHHHHH-HHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIV-KSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~-~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l~~ 230 (276)
+....+|||||||+|.++..++ ..+|+.+++++|+ |.+++.+++ .+|++++.+|+.+ ++++ +|+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999996 6789999999999 888887765 3569999999988 5554 99999999
Q ss_pred cccCCCcccc--------------------------------c------------------------------cCHHHHH
Q 046375 231 VLHNWSDEAC--------------------------------E------------------------------RTELEWK 248 (276)
Q Consensus 231 vlh~~~~~~~--------------------------------~------------------------------rt~~e~~ 248 (276)
++|++++.+. . ++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 9999976542 0 3689999
Q ss_pred HhHhhCCCCceEEEecC-CccEEEEEec
Q 046375 249 NIPEKGGSPRYRIIKIP-ALQCIIESYP 275 (276)
Q Consensus 249 ~ll~~aGf~~~~~~~~~-~~~~vi~a~~ 275 (276)
++|+++||+++++.... +....+.++|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999988653 3455566654
No 36
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.36 E-value=3.8e-12 Score=108.60 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=87.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~ 230 (276)
+....+|||||||+|.++..+++.+|. +++++|+ |.+++.+++ .+|++++.+|+.+ |++ .+|+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 456789999999999999999999986 9999999 888887765 4679999999977 665 399999999
Q ss_pred cccCCCcccc----------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 231 VLHNWSDEAC----------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 231 vlh~~~~~~~----------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
++|+++.+.. .++.++|.++|+++||+++++...+
T Consensus 123 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 123 AIYNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp CSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEECC
T ss_pred hHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 9999954433 1378999999999999999987664
No 37
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.36 E-value=6.1e-12 Score=106.23 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=88.5
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCC--Ccc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIP--NAD 224 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p--~~D 224 (276)
+.+...++ .....+|||||||+|.++..+++..+ .+++++|. +.+++.+++ ..+++++.+|+.+ +++ .+|
T Consensus 33 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 33 PALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 34555555 45678999999999999999998733 38999999 888887765 3579999999987 555 399
Q ss_pred EEEEcccccCCCcccc----------------------------c-----------------------------------
Q 046375 225 ALLLKWVLHNWSDEAC----------------------------E----------------------------------- 241 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~----------------------------~----------------------------------- 241 (276)
+|++.+++|++++... .
T Consensus 110 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 110 LAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 9999999999976443 0
Q ss_pred --cCHHHHHHhHhhCCCCceEEEec
Q 046375 242 --RTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 242 --rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
++.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 26899999999999999988654
No 38
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.35 E-value=2.5e-12 Score=111.08 Aligned_cols=103 Identities=15% Similarity=0.264 Sum_probs=88.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC--CccEEEEccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP--NADALLLKWV 231 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p--~~D~i~l~~v 231 (276)
+....+|||||||+|.++..+++++|+.+++++|. |.+++.+++ .++++++.+|+.+ +++ .+|+|+++++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999999 888887765 3589999999987 555 3999999999
Q ss_pred ccCCCcccc---------------------------------------------------ccCHHHHHHhHhhCCCCceE
Q 046375 232 LHNWSDEAC---------------------------------------------------ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 232 lh~~~~~~~---------------------------------------------------~rt~~e~~~ll~~aGf~~~~ 260 (276)
+|++++.+. ..+..++.++|+++||++++
T Consensus 115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~ 194 (276)
T 3mgg_A 115 LEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIR 194 (276)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEE
Confidence 999987654 02457899999999999988
Q ss_pred EEec
Q 046375 261 IIKI 264 (276)
Q Consensus 261 ~~~~ 264 (276)
+...
T Consensus 195 ~~~~ 198 (276)
T 3mgg_A 195 VEPR 198 (276)
T ss_dssp EEEE
T ss_pred EeeE
Confidence 7644
No 39
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.34 E-value=1e-12 Score=105.24 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=94.0
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCCCCC--CccEEEEc
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFHTIP--NADALLLK 229 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~~~p--~~D~i~l~ 229 (276)
+++.++ .....+|||||||+|.++..+++++. +++++|. +.+++.+++ .+++++..+| .+++ .+|+|+++
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 344444 56778999999999999999999884 8999998 888888776 6789999999 4454 49999999
Q ss_pred ccccCCCcccc---------------------------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 230 WVLHNWSDEAC---------------------------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 230 ~vlh~~~~~~~---------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
+++|++++... ..+.++|.++|+ ||+++++...+.....+++++
T Consensus 83 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 83 NSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKR 159 (170)
T ss_dssp SCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEE
T ss_pred cchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEec
Confidence 99999976554 137999999999 999999999877666666654
No 40
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.34 E-value=3.8e-12 Score=107.88 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=90.7
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC--
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP-- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p-- 221 (276)
..++..++ .....+|||||||+|.++..+++..+ +++++|+ |.+++.+++ ..+++++.+|+.+ |++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 44566666 77889999999999999999999876 8899998 888887765 3689999999987 665
Q ss_pred CccEEEEcccccCCCcccc---------------------------------------------ccCHHHHHHhHhhCCC
Q 046375 222 NADALLLKWVLHNWSDEAC---------------------------------------------ERTELEWKNIPEKGGS 256 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~---------------------------------------------~rt~~e~~~ll~~aGf 256 (276)
.||+|++.+++|++++... ..+.++|.++|+++||
T Consensus 87 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 166 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQL 166 (239)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTE
T ss_pred cEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCC
Confidence 3999999999999987554 1378999999999999
Q ss_pred CceEEEec
Q 046375 257 PRYRIIKI 264 (276)
Q Consensus 257 ~~~~~~~~ 264 (276)
+++++...
T Consensus 167 ~~~~~~~~ 174 (239)
T 1xxl_A 167 AYQDIQKW 174 (239)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEee
Confidence 98877543
No 41
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=6.1e-12 Score=108.06 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=89.7
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCC--CccEEE
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIP--NADALL 227 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p--~~D~i~ 227 (276)
..++..++ .....+|||||||+|.++..+++ |+.+++++|+ |.+++.+++..+++++.+|+.+ |++ .+|+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34455555 56789999999999999999998 7889999999 9999988886699999999987 665 399999
Q ss_pred EcccccCCCcccc-------------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 228 LKWVLHNWSDEAC-------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 228 l~~vlh~~~~~~~-------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+++++|++++... .++.+++. +|+++||+.+++...
T Consensus 100 ~~~~l~~~~~~~~~l~~~~~~LkgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 100 SILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp EESCGGGCSSHHHHHHHHHHHBCSSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred EcchHhhccCHHHHHHHHHHHhCCcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence 9999999976543 12577788 999999998887654
No 42
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.32 E-value=6.6e-12 Score=105.73 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=90.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC-CccEEEE-cccccCCCc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP-NADALLL-KWVLHNWSD 237 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p-~~D~i~l-~~vlh~~~~ 237 (276)
....+|||||||+|.++..++++++ +++++|+ |.+++.+++ ..+++++.+|+.+ +.+ .+|+|++ ..++|+.++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999987 8899999 999988876 5789999999987 555 4999995 558888754
Q ss_pred c-cc-------------------------c--------------------------------------------------
Q 046375 238 E-AC-------------------------E-------------------------------------------------- 241 (276)
Q Consensus 238 ~-~~-------------------------~-------------------------------------------------- 241 (276)
. +. +
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 2 21 0
Q ss_pred --------cCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 242 --------RTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 242 --------rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
+|.++|.++|+++||+++.+....+...+++|+|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 1469999999999998777766566788999887
No 43
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.32 E-value=5.5e-12 Score=108.51 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=87.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~ 230 (276)
+....+|||||||+|.++..+++. |..+++++|+ |.+++.+++ .++++++.+|+.+ +++ .+|+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999998 8889999999 888887765 3789999999987 555 399999999
Q ss_pred cccCCCcccc----------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 231 VLHNWSDEAC----------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 231 vlh~~~~~~~----------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
++|+++.... .++..++.++|+++||+++++...+
T Consensus 123 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 123 AIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp CGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred CceecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 9999954433 0268899999999999999987764
No 44
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.31 E-value=1.3e-11 Score=104.20 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=85.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCC--CccEEEEcccccCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIP--NADALLLKWVLHNW 235 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~ 235 (276)
+...+|||||||+|.++..+++. +.+++++|+ |.+++.+++ ..+++++.+|+.+ +++ .+|+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46789999999999999999998 568999998 888888766 5789999999988 665 39999999999999
Q ss_pred Ccccc------------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 236 SDEAC------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 236 ~~~~~------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
++... ..+..++.++|+++||+++++...
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 87654 147899999999999999887644
No 45
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.30 E-value=8.4e-12 Score=109.27 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=65.6
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----C----CCeEEEEccCCC-C
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----Y----DGVTHVSGDMFH-T 219 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~----~ri~~~~~d~~~-~ 219 (276)
...++..+. ....+|||||||+|.++..++++ +.+++++|+ |.+++.+++ . .+|+++.+|+.+ +
T Consensus 72 ~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 72 AREFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 455555554 23459999999999999999998 568999999 889988875 1 789999999998 5
Q ss_pred CCC-ccEEEEc-ccccCCCcc
Q 046375 220 IPN-ADALLLK-WVLHNWSDE 238 (276)
Q Consensus 220 ~p~-~D~i~l~-~vlh~~~~~ 238 (276)
+++ ||+|+++ .++|.++++
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~ 167 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEA 167 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHH
T ss_pred cCCCcCEEEECCcccccCCHH
Confidence 664 9988865 667777654
No 46
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.29 E-value=1.5e-11 Score=103.86 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC-CccEEEEcc-cccC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP-NADALLLKW-VLHN 234 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p-~~D~i~l~~-vlh~ 234 (276)
...+|||||||+|.++..+++. ..+++++|. |.+++.+++ ..+++++.+|+.+ +++ .+|+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999998 468999999 888888765 2289999999987 555 499999998 9999
Q ss_pred CCc
Q 046375 235 WSD 237 (276)
Q Consensus 235 ~~~ 237 (276)
+++
T Consensus 115 ~~~ 117 (246)
T 1y8c_A 115 IID 117 (246)
T ss_dssp CCS
T ss_pred cCC
Confidence 853
No 47
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.29 E-value=1.2e-11 Score=104.72 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=83.3
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC---CCC--CccEEEEcccccCC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH---TIP--NADALLLKWVLHNW 235 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~---~~p--~~D~i~l~~vlh~~ 235 (276)
+....+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .+|+|++.+++|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999998 557899998 8888887655 8999999876 666 39999999999999
Q ss_pred Ccccc-----------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 236 SDEAC-----------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 236 ~~~~~-----------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
++++. ..+.+++.++|+++||+++++...
T Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 184 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFF 184 (240)
T ss_dssp CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence 97632 137899999999999999887654
No 48
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.29 E-value=9.3e-12 Score=108.31 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=68.5
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEEcccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIPN-ADALLLKWVL 232 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p~-~D~i~l~~vl 232 (276)
..+..+|||||||+|.++..+++.+|+ .+++++|+ |.+++.+++ ..+++++.+|+.+ ++++ +|+|++++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 567899999999999999999999995 89999998 888877665 3389999999998 5554 9999999999
Q ss_pred cCCCcccc
Q 046375 233 HNWSDEAC 240 (276)
Q Consensus 233 h~~~~~~~ 240 (276)
|++++...
T Consensus 100 ~~~~~~~~ 107 (284)
T 3gu3_A 100 LHMTTPET 107 (284)
T ss_dssp GGCSSHHH
T ss_pred hcCCCHHH
Confidence 99987654
No 49
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.28 E-value=1.4e-11 Score=100.04 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=90.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEEc-ccccCCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP--NADALLLK-WVLHNWS 236 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p--~~D~i~l~-~vlh~~~ 236 (276)
....+|||||||+|.++..+++. +.+++++|. |.+++.+++ ..+++++.+|+.+ +++ .+|+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 46789999999999999999997 568999998 888888776 5679999999988 565 39999998 8999887
Q ss_pred cccc-------------------------ccCHHHHHHhHhhCCCCceEEEec--------CCccEEEEEec
Q 046375 237 DEAC-------------------------ERTELEWKNIPEKGGSPRYRIIKI--------PALQCIIESYP 275 (276)
Q Consensus 237 ~~~~-------------------------~rt~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~a~~ 275 (276)
+++. ..+..++.++++++||+++++... .....++.++|
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEec
Confidence 6533 147999999999999999887544 12455666665
No 50
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.28 E-value=1.1e-11 Score=107.64 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=88.4
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-C-CC-
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-T-IP- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~-~p- 221 (276)
.++..+. .+..+|||||||+|.++..+++. +.+++++|+ |.+++.+++ .++++++.+|+.+ + ++
T Consensus 60 ~~l~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG---PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC---SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC---CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 3445444 34689999999999999999998 678999999 888888765 2789999999987 3 34
Q ss_pred -CccEEEEcccccCCCcccc------------------------------------------------------ccCHHH
Q 046375 222 -NADALLLKWVLHNWSDEAC------------------------------------------------------ERTELE 246 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~------------------------------------------------------~rt~~e 246 (276)
.+|+|++.+++|++++... ..+.++
T Consensus 135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQ 214 (285)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHH
T ss_pred CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHH
Confidence 3999999999999987554 026799
Q ss_pred HHHhHhhCCCCceEEEecC
Q 046375 247 WKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 247 ~~~ll~~aGf~~~~~~~~~ 265 (276)
+.++|+++||+++++....
T Consensus 215 l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 215 VYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHHHHHTTCEEEEEEEES
T ss_pred HHHHHHHCCCceeeeeeEE
Confidence 9999999999999887653
No 51
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.27 E-value=7.9e-12 Score=105.42 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=83.3
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC--CccEEEEcccccC
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP--NADALLLKWVLHN 234 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~ 234 (276)
..+|||||||+|.++..+++ +..+++++|+ |.+++.+++ ..+++++.+|+.+..+ .+|+|+++.++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999977 5778999998 888887765 2569999999998433 4999999999999
Q ss_pred CCcccc---------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 235 WSDEAC---------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 235 ~~~~~~---------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
+++++. ..+.++|.++|+++||+++++...+
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence 985543 1379999999999999999987663
No 52
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=1.3e-11 Score=107.01 Aligned_cols=110 Identities=19% Similarity=0.171 Sum_probs=90.4
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCCC-ccEE
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIPN-ADAL 226 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p~-~D~i 226 (276)
...+++.+. .....+|||||||+|.++..+++ |..+++++|+ |.+++.+++ ..+++++.+|+.+ ++++ +|+|
T Consensus 46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 121 (279)
T 3ccf_A 46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV 121 (279)
T ss_dssp CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE
Confidence 344555555 56678999999999999999999 7889999999 888888776 5789999999987 5554 9999
Q ss_pred EEcccccCCCcccc---------------------------------------------------ccCHHHHHHhHhhCC
Q 046375 227 LLKWVLHNWSDEAC---------------------------------------------------ERTELEWKNIPEKGG 255 (276)
Q Consensus 227 ~l~~vlh~~~~~~~---------------------------------------------------~rt~~e~~~ll~~aG 255 (276)
++++++|++++... ..+.++|.++|+++|
T Consensus 122 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 201 (279)
T 3ccf_A 122 FSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQG 201 (279)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHT
T ss_pred EEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcC
Confidence 99999999887554 015788999999999
Q ss_pred CCceEEEec
Q 046375 256 SPRYRIIKI 264 (276)
Q Consensus 256 f~~~~~~~~ 264 (276)
|+++++...
T Consensus 202 f~~~~~~~~ 210 (279)
T 3ccf_A 202 FDVTYAALF 210 (279)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 998876543
No 53
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.26 E-value=9.6e-12 Score=103.71 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=66.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-------CCeEEEEccCCC-CCC--CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----Y-------DGVTHVSGDMFH-TIP--NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~-------~ri~~~~~d~~~-~~p--~~D~i~ 227 (276)
....+|||||||+|.++..++++.|..+++++|+ |.+++.+++ . .+++++.+|+.. +.+ .+|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4578999999999999999999999999999999 888887765 1 289999999966 333 499999
Q ss_pred EcccccCCCccc
Q 046375 228 LKWVLHNWSDEA 239 (276)
Q Consensus 228 l~~vlh~~~~~~ 239 (276)
+..++|++++++
T Consensus 108 ~~~~l~~~~~~~ 119 (219)
T 3jwg_A 108 VIEVIEHLDENR 119 (219)
T ss_dssp EESCGGGCCHHH
T ss_pred EHHHHHhCCHHH
Confidence 999999998764
No 54
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.26 E-value=1.7e-11 Score=111.27 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC--------------CCeEEEEccCCC-------C
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPVY--------------DGVTHVSGDMFH-------T 219 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~~--------------~ri~~~~~d~~~-------~ 219 (276)
....+|||||||+|.++..+++.+ |+.+++++|+ |.+++.+++. .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999999997 8899999999 8888877651 699999999986 5
Q ss_pred CC--CccEEEEcccccCCCcccc-------------------------------------------ccCHHHHHHhHhhC
Q 046375 220 IP--NADALLLKWVLHNWSDEAC-------------------------------------------ERTELEWKNIPEKG 254 (276)
Q Consensus 220 ~p--~~D~i~l~~vlh~~~~~~~-------------------------------------------~rt~~e~~~ll~~a 254 (276)
+| .+|+|+++.++|.+++... ..+.++|.++|+++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 55 3999999999999987554 03569999999999
Q ss_pred CCCceEEEe
Q 046375 255 GSPRYRIIK 263 (276)
Q Consensus 255 Gf~~~~~~~ 263 (276)
||+.+++..
T Consensus 242 GF~~v~~~~ 250 (383)
T 4fsd_A 242 GFRDVRLVS 250 (383)
T ss_dssp TCCCEEEEE
T ss_pred CCceEEEEe
Confidence 999887644
No 55
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.26 E-value=3.4e-11 Score=104.54 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=89.4
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p- 221 (276)
...+++.++ .....+|||||||+|.++..++++++ .+++++|+ |.+++.+++ .++++++.+|+.+ +|
T Consensus 53 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~ 128 (287)
T 1kpg_A 53 IDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDE 128 (287)
T ss_dssp HHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCC
T ss_pred HHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC
Confidence 345666666 66778999999999999999997775 49999999 888877754 3589999999965 34
Q ss_pred CccEEEEcccccCCCcccc----------------------------c-----------------------------cCH
Q 046375 222 NADALLLKWVLHNWSDEAC----------------------------E-----------------------------RTE 244 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~----------------------------~-----------------------------rt~ 244 (276)
.+|+|++..++|++++++. . ++.
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 208 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCH
Confidence 5999999999999965332 0 168
Q ss_pred HHHHHhHhhCCCCceEEEec
Q 046375 245 LEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 245 ~e~~~ll~~aGf~~~~~~~~ 264 (276)
++|.++++++||+++++...
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHhCCcEEEEEEeC
Confidence 89999999999999998765
No 56
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.26 E-value=1.4e-11 Score=105.02 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=73.2
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC-CccEEE
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP-NADALL 227 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p-~~D~i~ 227 (276)
..++..+. .....+|||||||+|.++..+++++|..+++++|+ |.+++.+++ ..+++++.+|+.+ +.+ .+|+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34566665 56778999999999999999999999999999999 889888876 6789999999987 422 399999
Q ss_pred EcccccCCCcccc
Q 046375 228 LKWVLHNWSDEAC 240 (276)
Q Consensus 228 l~~vlh~~~~~~~ 240 (276)
+++++|++++...
T Consensus 101 ~~~~l~~~~~~~~ 113 (259)
T 2p35_A 101 ANAVFQWVPDHLA 113 (259)
T ss_dssp EESCGGGSTTHHH
T ss_pred EeCchhhCCCHHH
Confidence 9999999976443
No 57
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.25 E-value=2.4e-11 Score=101.21 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=90.8
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC----CC-C-C-cc
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH----TI-P-N-AD 224 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~----~~-p-~-~D 224 (276)
.++..+. .....+|||||||+|.++..+++. +.+++++|+ |.+++.+++..++.+..+|+.+ +. + + +|
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 4445444 445699999999999999999998 668999999 8899888777788889988765 22 2 3 99
Q ss_pred EEEEcccccCCCcccc----------------------------------------------------ccCHHHHHHhHh
Q 046375 225 ALLLKWVLHNWSDEAC----------------------------------------------------ERTELEWKNIPE 252 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~----------------------------------------------------~rt~~e~~~ll~ 252 (276)
+|++.+++| +.+... .++.++|.++|+
T Consensus 119 ~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (227)
T 3e8s_A 119 LICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALD 197 (227)
T ss_dssp EEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHH
T ss_pred EEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHH
Confidence 999999999 555443 027899999999
Q ss_pred hCCCCceEEEec--C-C---ccEEEEEec
Q 046375 253 KGGSPRYRIIKI--P-A---LQCIIESYP 275 (276)
Q Consensus 253 ~aGf~~~~~~~~--~-~---~~~vi~a~~ 275 (276)
++||+++++... + . ...++.++|
T Consensus 198 ~aGf~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 198 MAGLRLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp HTTEEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred HcCCeEEEEecCCCCCCCCceeEEEEeec
Confidence 999999998653 1 1 245666654
No 58
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.25 E-value=1.4e-11 Score=102.18 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=84.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCC-CccEEEEcccccCCCcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIP-NADALLLKWVLHNWSDE 238 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p-~~D~i~l~~vlh~~~~~ 238 (276)
+....+|||||||+|.++..++++ +.+++++|+ |.+++.+++.-++++..+|+.+ +.+ .+|+|++.+++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999987 568999998 8888887764368889999887 433 39999999999999854
Q ss_pred cc-------------------------------------ccCHHHHHHhHhhCC-CCceEEEec
Q 046375 239 AC-------------------------------------ERTELEWKNIPEKGG-SPRYRIIKI 264 (276)
Q Consensus 239 ~~-------------------------------------~rt~~e~~~ll~~aG-f~~~~~~~~ 264 (276)
+. ..+.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 43 138999999999999 999888654
No 59
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.24 E-value=2.7e-11 Score=106.12 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=71.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p- 221 (276)
...++..++ .....+|||||||+|.++..++++++ .+++++|+ |.+++.+++ .++++++.+|+.+- +
T Consensus 61 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 136 (302)
T 3hem_A 61 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DE 136 (302)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CC
T ss_pred HHHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CC
Confidence 345666666 67788999999999999999999987 89999999 888887765 34899999999764 5
Q ss_pred CccEEEEcccccCCCcc
Q 046375 222 NADALLLKWVLHNWSDE 238 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~ 238 (276)
.+|+|++..++|++++.
T Consensus 137 ~fD~v~~~~~~~~~~d~ 153 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADG 153 (302)
T ss_dssp CCSEEEEESCGGGTTCC
T ss_pred CccEEEEcchHHhcCcc
Confidence 49999999999999764
No 60
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.24 E-value=1.4e-11 Score=102.63 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=82.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-------CCeEEEEccCCC-CCC--CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----Y-------DGVTHVSGDMFH-TIP--NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~-------~ri~~~~~d~~~-~~p--~~D~i~ 227 (276)
....+|||||||+|.++..+++++|..+++++|+ |.+++.+++ . .+++++.+|+.. +.+ .+|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 4568999999999999999999999999999998 888887765 1 289999999865 333 499999
Q ss_pred EcccccCCCcccc--------------------------------------------ccCHHHHH----HhHhhCCCCce
Q 046375 228 LKWVLHNWSDEAC--------------------------------------------ERTELEWK----NIPEKGGSPRY 259 (276)
Q Consensus 228 l~~vlh~~~~~~~--------------------------------------------~rt~~e~~----~ll~~aGf~~~ 259 (276)
+..++|++++++. ..+.+++. ++++++||+++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~ 187 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ 187 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence 9999999987632 12788888 89999999875
Q ss_pred EE
Q 046375 260 RI 261 (276)
Q Consensus 260 ~~ 261 (276)
..
T Consensus 188 ~~ 189 (217)
T 3jwh_A 188 FQ 189 (217)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 61
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=109.57 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=84.3
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C--------------------
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------Y-------------------- 206 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~-------------------- 206 (276)
+..+...+....+|||||||+|.++..+++++|..+++++|+ +.+++.+++ .
T Consensus 37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T 3g07_A 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEG 116 (292)
T ss_dssp GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--------------------------
T ss_pred HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence 344432244678999999999999999999999999999999 888876653 1
Q ss_pred -------------------------------------CCeEEEEccCCCC------CC--CccEEEEcccccCC----Cc
Q 046375 207 -------------------------------------DGVTHVSGDMFHT------IP--NADALLLKWVLHNW----SD 237 (276)
Q Consensus 207 -------------------------------------~ri~~~~~d~~~~------~p--~~D~i~l~~vlh~~----~~ 237 (276)
.+|+|+.+|+... ++ .+|+|++..++|++ ++
T Consensus 117 ~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~ 196 (292)
T 3g07_A 117 TTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGD 196 (292)
T ss_dssp -------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHH
T ss_pred cccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCH
Confidence 5899999999862 22 49999999998554 44
Q ss_pred ccc--------------------------------------------ccCHHHHHHhHhh--CCCCceEEEec
Q 046375 238 EAC--------------------------------------------ERTELEWKNIPEK--GGSPRYRIIKI 264 (276)
Q Consensus 238 ~~~--------------------------------------------~rt~~e~~~ll~~--aGf~~~~~~~~ 264 (276)
+.. ...++++..+|.+ +||+.++++..
T Consensus 197 ~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 197 EGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 333 1247889999999 99998887655
No 62
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.23 E-value=1.5e-11 Score=104.26 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=85.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC--CccEEEEccccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP--NADALLLKWVLH 233 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh 233 (276)
...+|||||||+|.++..+++++ ..+++++|+ |.+++.+++ ..+++++.+|+.+ +++ .+|+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999987 568999998 888887765 2368999999877 444 399999999999
Q ss_pred CCCcccc-------------------------------------ccCHHHHHHhHhhCCCCceEEEecC
Q 046375 234 NWSDEAC-------------------------------------ERTELEWKNIPEKGGSPRYRIIKIP 265 (276)
Q Consensus 234 ~~~~~~~-------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~ 265 (276)
++++++. .++.++|.++|+++||+++++....
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 226 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence 9998652 1379999999999999999987663
No 63
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.22 E-value=1.6e-11 Score=105.78 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=88.9
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hH------HHhhCCC-------CCCeEEEEcc-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PH------VITTAPV-------YDGVTHVSGD- 215 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~------~~~~a~~-------~~ri~~~~~d- 215 (276)
..+++.++ .....+|||||||+|.++..+++++ |+.+++++|+ +. +++.+++ .++|+++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34566665 6678899999999999999999996 8899999999 54 6766654 2689999998
Q ss_pred CCC---CCC--CccEEEEcccccCCCcccc--------------------------------------------------
Q 046375 216 MFH---TIP--NADALLLKWVLHNWSDEAC-------------------------------------------------- 240 (276)
Q Consensus 216 ~~~---~~p--~~D~i~l~~vlh~~~~~~~-------------------------------------------------- 240 (276)
+.. |++ .+|+|++..++|++++.+.
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDV 190 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTT
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccc
Confidence 543 344 3999999999999987554
Q ss_pred -----ccCHHHHHHhHhhCCCCceEEEec
Q 046375 241 -----ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 241 -----~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
..+.++|.++|+++||+++++...
T Consensus 191 ~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 191 ANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 025779999999999999887665
No 64
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.22 E-value=3.8e-11 Score=100.60 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=63.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCC-CCC--CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFH-TIP--NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~-~~p--~~D~i~ 227 (276)
+...+|||||||+|.++..++++ +.+++++|+ |.+++.+++ .++++++.+|+.+ +++ .+|+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46789999999999999999998 678999998 888876654 2368999999987 555 399999
Q ss_pred EcccccCCCccc
Q 046375 228 LKWVLHNWSDEA 239 (276)
Q Consensus 228 l~~vlh~~~~~~ 239 (276)
+..++|++++.+
T Consensus 107 ~~~~l~~~~~~~ 118 (235)
T 3sm3_A 107 MQAFLTSVPDPK 118 (235)
T ss_dssp EESCGGGCCCHH
T ss_pred EcchhhcCCCHH
Confidence 999999998755
No 65
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.20 E-value=1.1e-10 Score=97.02 Aligned_cols=109 Identities=14% Similarity=0.004 Sum_probs=83.5
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCC-CCC--CccEEEE
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFH-TIP--NADALLL 228 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~-~~p--~~D~i~l 228 (276)
..++..+. ......+|||||||+|.++..+. .+++++|.... +++++.+|+.+ +++ .+|+|++
T Consensus 56 ~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 56 DRIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 34455443 13456899999999999998883 57899998432 57889999987 665 3999999
Q ss_pred cccccCCCcccc-----------------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 229 KWVLHNWSDEAC-----------------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 229 ~~vlh~~~~~~~-----------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
++++|. .+... ..+.++|.++|+++||+++.+...++...++.++|
T Consensus 122 ~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 122 CLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp ESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEE
T ss_pred ehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEe
Confidence 999984 44332 13789999999999999998777667778888776
No 66
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.20 E-value=7.6e-11 Score=103.95 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=89.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p- 221 (276)
...+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ |.+++.+++ .++++++.+|+.+ +|
T Consensus 79 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 154 (318)
T 2fk8_A 79 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE 154 (318)
T ss_dssp HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred HHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCC
Confidence 345666666 6677899999999999999999987 569999999 888887765 2679999999876 34
Q ss_pred CccEEEEcccccCCCcccc----------------------------c-----------------------------cCH
Q 046375 222 NADALLLKWVLHNWSDEAC----------------------------E-----------------------------RTE 244 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~----------------------------~-----------------------------rt~ 244 (276)
.+|+|++..++|++++++. . ++.
T Consensus 155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 5999999999999975432 0 157
Q ss_pred HHHHHhHhhCCCCceEEEec
Q 046375 245 LEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 245 ~e~~~ll~~aGf~~~~~~~~ 264 (276)
+++.++++++||+++++...
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHhCCCEEEEEEec
Confidence 89999999999999887664
No 67
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.19 E-value=7.9e-11 Score=98.18 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=86.7
Q ss_pred hHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC---CCC--Cc
Q 046375 150 LTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH---TIP--NA 223 (276)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~---~~p--~~ 223 (276)
..+.+++.++ ....+|||||||+|.++..+++. + .+++++|. +.+++.+++.. .+++.+|+.+ +++ .+
T Consensus 21 ~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 21 VNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp CCHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCE
T ss_pred HHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCcc
Confidence 3455666554 46689999999999999999998 5 89999998 88888776522 3788899875 444 39
Q ss_pred cEEEEcccccCCCcccc--------------------------------------------------ccCHHHHHHhHhh
Q 046375 224 DALLLKWVLHNWSDEAC--------------------------------------------------ERTELEWKNIPEK 253 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~--------------------------------------------------~rt~~e~~~ll~~ 253 (276)
|+|++.+++|++++... ..+.++|.++|++
T Consensus 95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (230)
T 3cc8_A 95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLK 174 (230)
T ss_dssp EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHH
T ss_pred CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHH
Confidence 99999999999987543 0278999999999
Q ss_pred CCCCceEEEec
Q 046375 254 GGSPRYRIIKI 264 (276)
Q Consensus 254 aGf~~~~~~~~ 264 (276)
+||+++++...
T Consensus 175 ~Gf~~~~~~~~ 185 (230)
T 3cc8_A 175 AGYSISKVDRV 185 (230)
T ss_dssp TTEEEEEEEEE
T ss_pred cCCeEEEEEec
Confidence 99999888664
No 68
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.19 E-value=3.9e-11 Score=101.26 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=82.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCCCCC--CccEEEEcccccCCCcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFHTIP--NADALLLKWVLHNWSDE 238 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~~~~~ 238 (276)
...+|||||||+|.++..+++.++ +++++|+ |.+++.+++ ..+++++.+|+.+..+ .+|+|++.+++|++++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 467899999999999999999887 6899998 888888776 2289999999987433 39999999999999865
Q ss_pred cc------------------------------------------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 239 AC------------------------------------------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 239 ~~------------------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
.. ..+.+++.++|+++||+++++..
T Consensus 120 ~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 198 (250)
T 2p7i_A 120 VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSG 198 (250)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEee
Confidence 32 02688999999999999988754
No 69
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.19 E-value=2.1e-11 Score=101.01 Aligned_cols=100 Identities=9% Similarity=-0.011 Sum_probs=82.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------------------CCCeEEEEccCCC-CCC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------------------YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~d~~~-~~p 221 (276)
.....+|||||||+|.++..|+++ +.+++++|+ +.+++.+++ ..+|+++.+|+++ +++
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 556789999999999999999998 568999999 889987754 2589999999998 443
Q ss_pred ---CccEEEEcccccCCCcccc----------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 222 ---NADALLLKWVLHNWSDEAC----------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 222 ---~~D~i~l~~vlh~~~~~~~----------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
.||+|+++.++|.+++++. ..+.+|+.+++++ ||+++.+...
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 4999999999999886543 0268999999999 9998777554
No 70
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.18 E-value=6.9e-11 Score=97.52 Aligned_cols=112 Identities=11% Similarity=-0.015 Sum_probs=90.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC-CccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP-NADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p-~~D~i~l~~vlh~ 234 (276)
....+|||||||+|.++..+++ .|..+++++|. |.+++.+++ ..+++++.+|+.+..+ .+|+|++...+|.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999876 57789999999 888887765 2349999999988545 4999999888876
Q ss_pred CCcc--cc----------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 235 WSDE--AC----------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 235 ~~~~--~~----------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
+..- +. ..+..++.++++++||+.+++...++..+++.-+|
T Consensus 138 ~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 138 LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRK 196 (205)
T ss_dssp HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEEecc
Confidence 4211 11 24789999999999999999988888888887665
No 71
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.17 E-value=1.7e-10 Score=97.30 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEEcc-cccC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIPN-ADALLLKW-VLHN 234 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p~-~D~i~l~~-vlh~ 234 (276)
...+|||||||+|.++..+++. .+++++|. |.+++.+++ ..+++++.+|+.+ ++++ +|+|++.. ++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999999987 68999999 888888765 3679999999987 5554 99999986 8888
Q ss_pred CC
Q 046375 235 WS 236 (276)
Q Consensus 235 ~~ 236 (276)
+.
T Consensus 110 ~~ 111 (243)
T 3d2l_A 110 LQ 111 (243)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 72
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.17 E-value=2.9e-10 Score=98.45 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=88.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEEc-----
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--NADALLLK----- 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~l~----- 229 (276)
...+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|++++++ .+|+|+++
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID 188 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCC
Confidence 467999999999999999999999999999999 888887765 3589999999998653 49999997
Q ss_pred --------ccccCCCccc-----------c---------------------ccCHHHHHHhHhhCCCCceEEEec-CCcc
Q 046375 230 --------WVLHNWSDEA-----------C---------------------ERTELEWKNIPEKGGSPRYRIIKI-PALQ 268 (276)
Q Consensus 230 --------~vlh~~~~~~-----------~---------------------~rt~~e~~~ll~~aGf~~~~~~~~-~~~~ 268 (276)
.++++.|... . ..+.+++.++++++||+.+++... .+..
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~ 268 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNE 268 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTSSE
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCCCCC
Confidence 3444333210 0 247899999999999998887654 5656
Q ss_pred EEEEEec
Q 046375 269 CIIESYP 275 (276)
Q Consensus 269 ~vi~a~~ 275 (276)
.++.+++
T Consensus 269 r~~~~~~ 275 (276)
T 2b3t_A 269 RVTLGRY 275 (276)
T ss_dssp EEEEEEC
T ss_pred cEEEEEE
Confidence 6666654
No 73
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.16 E-value=1.3e-10 Score=96.90 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=78.5
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCC--CccEEEEcccccCCCcccc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIP--NADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~~~~ 240 (276)
..+|||||||+|.++..++++ +++|. +.+++.+++. +++++.+|+.+ +++ .+|+|++.+++|++++...
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 120 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHH
Confidence 789999999999999998775 99998 8888877655 79999999977 555 3999999999999976553
Q ss_pred --------------------------------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 241 --------------------------------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 241 --------------------------------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
..+.++|.++|+++||+++++...
T Consensus 121 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 121 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 037899999999999999887644
No 74
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.15 E-value=3.2e-10 Score=91.12 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=80.4
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCCCCC--CccEEEEcccccCCCcc--
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFHTIP--NADALLLKWVLHNWSDE-- 238 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~~~~~-- 238 (276)
...+|||||||+|.++..++++. +++++|+ |.+++. ..+++++.+|+.++++ .+|+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45799999999999999999987 9999999 888887 6789999999998766 39999998888876654
Q ss_pred -----cc----------------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 239 -----AC----------------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 239 -----~~----------------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+. ..+..++.++++++||+.+.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~lpgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAVTVGMLYLLVIEANRPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp TBCCGGGCHHHHHHHHHCCSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccCCcchHHHHHHHHhhCCCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEee
Confidence 11 247899999999999998887655
No 75
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.15 E-value=1.4e-10 Score=100.55 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=76.0
Q ss_pred CCceEEEeeCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCCC------------CC--
Q 046375 164 SLKSLVDVAGGI---GGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFHT------------IP-- 221 (276)
Q Consensus 164 ~~~~vlDvGgG~---G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~~------------~p-- 221 (276)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 458999999999 999988889999999999999 999988775 47899999999762 22
Q ss_pred CccEEEEcccccCCCccccccCHHHHHHhHhhCC
Q 046375 222 NADALLLKWVLHNWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aG 255 (276)
.+|+|++..+||++++++......++.+.|..-|
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG 190 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGS 190 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCc
Confidence 5899999999999998766555555666555555
No 76
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.14 E-value=2.1e-10 Score=97.80 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=65.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEEcccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP--NADALLLKWVL 232 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p--~~D~i~l~~vl 232 (276)
.....+|||||||+|.++..++++ +.+++++|. |.+++.+++ ..+++++.+|+.+ +++ .+|+|++++++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556789999999999999999987 578999998 888877654 4789999999987 555 39999999999
Q ss_pred cCCCcccc
Q 046375 233 HNWSDEAC 240 (276)
Q Consensus 233 h~~~~~~~ 240 (276)
|++++...
T Consensus 115 ~~~~~~~~ 122 (263)
T 2yqz_A 115 HLVPDWPK 122 (263)
T ss_dssp GGCTTHHH
T ss_pred hhcCCHHH
Confidence 99976543
No 77
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.14 E-value=1.9e-10 Score=93.87 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCC-C
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIP-N 222 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p-~ 222 (276)
+.+++.++ .....+|||||||+|.++..+++. +.+++++|. |.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 34455555 455679999999999999999987 669999999 888887765 2479999999987 455 4
Q ss_pred ccEEEEcccccCCCcccc------------------------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 223 ADALLLKWVLHNWSDEAC------------------------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~------------------------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
+|+|++..++|++++++. ..+.+++.++|++ |++++...
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNE 172 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecc
Confidence 999999999999985543 0278999999987 99887653
No 78
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.08 E-value=5.8e-10 Score=93.88 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=83.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC----CCCCeEEEEccCCC-----CCC-CccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP----VYDGVTHVSGDMFH-----TIP-NADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~----~~~ri~~~~~d~~~-----~~p-~~D~i~l~~ 230 (276)
+....+|||||||+|.++..+++.+|..+++++|. |.+++.++ ...++.++.+|+.+ +++ .+|+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999998889999998 87776543 35789999999976 233 499988
Q ss_pred cccCCCcc---cc------------------------cc-------CHHHHHHhHhhCCCCceEEEecCCc---cEEEEE
Q 046375 231 VLHNWSDE---AC------------------------ER-------TELEWKNIPEKGGSPRYRIIKIPAL---QCIIES 273 (276)
Q Consensus 231 vlh~~~~~---~~------------------------~r-------t~~e~~~ll~~aGf~~~~~~~~~~~---~~vi~a 273 (276)
|+.++. .. .. ..+++. +|+++||+.+++.+.... +.+|.+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~ 225 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVG 225 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEE
Confidence 555544 21 01 136777 999999999998887553 777777
Q ss_pred ec
Q 046375 274 YP 275 (276)
Q Consensus 274 ~~ 275 (276)
+|
T Consensus 226 ~k 227 (230)
T 1fbn_A 226 IW 227 (230)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 79
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.08 E-value=7e-10 Score=91.38 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCC---CC
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTI---PN 222 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~---p~ 222 (276)
.++..++ .....+|||||||+|.++..+++.+|..+++++|. |.+++.+++ .++++++.+|+.+.+ +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3455555 66778999999999999999999999999999999 888888765 378999999997733 45
Q ss_pred ccEEEEcccccCCCcc--cc----------------ccCHHHHHHhHhhCCC
Q 046375 223 ADALLLKWVLHNWSDE--AC----------------ERTELEWKNIPEKGGS 256 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~--~~----------------~rt~~e~~~ll~~aGf 256 (276)
+|+|++...+++...- ++ ..+.+++.++++++||
T Consensus 109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 9999999887732210 00 1357888999999999
No 80
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.06 E-value=3.5e-10 Score=95.27 Aligned_cols=113 Identities=9% Similarity=-0.072 Sum_probs=87.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC---CccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP---NADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p---~~D~i~l~~v 231 (276)
++..+|+|||||+|.+++.+++..|..+++++|. |..++.+++ .+||++..+|.+++++ .+|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3568999999999999999999999999999999 888888775 5789999999999543 4999876554
Q ss_pred ----ccCCCcccc-------------ccCHHHHHHhHhhCCCCceEEEec---CCccEEEEEec
Q 046375 232 ----LHNWSDEAC-------------ERTELEWKNIPEKGGSPRYRIIKI---PALQCIIESYP 275 (276)
Q Consensus 232 ----lh~~~~~~~-------------~rt~~e~~~ll~~aGf~~~~~~~~---~~~~~vi~a~~ 275 (276)
++..-++-. ....++++++|.+.||.+++..-. +-++-+|.+.+
T Consensus 100 Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 100 GGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 222111111 136889999999999998876432 33688888765
No 81
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.05 E-value=3.4e-10 Score=97.28 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=66.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCCC--ccEEEEcccccCCCcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIPN--ADALLLKWVLHNWSDE 238 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p~--~D~i~l~~vlh~~~~~ 238 (276)
+...+|||||||+|.++..|++++ .+++++|+ +.+++.+++..+|+++.+|+.+ |+|+ +|+|++..++|.++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 355799999999999999999986 47899998 9999999988899999999987 7773 9999999999988655
Q ss_pred cc
Q 046375 239 AC 240 (276)
Q Consensus 239 ~~ 240 (276)
..
T Consensus 116 ~~ 117 (257)
T 4hg2_A 116 RF 117 (257)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 82
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.04 E-value=4.4e-10 Score=94.49 Aligned_cols=113 Identities=11% Similarity=0.008 Sum_probs=87.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC---CccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP---NADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p---~~D~i~l~~v 231 (276)
+...+|+|||||+|.+++.+++..|..+++++|. |..++.+++ .++|++..+|.+++++ .+|+|+...+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3568999999999999999999999999999998 888888765 4689999999998765 3998886543
Q ss_pred ----ccCCCcccc-------------ccCHHHHHHhHhhCCCCceEEE--ecCC-ccEEEEEec
Q 046375 232 ----LHNWSDEAC-------------ERTELEWKNIPEKGGSPRYRII--KIPA-LQCIIESYP 275 (276)
Q Consensus 232 ----lh~~~~~~~-------------~rt~~e~~~ll~~aGf~~~~~~--~~~~-~~~vi~a~~ 275 (276)
++..-++-. -......+++|.+.||.+++.. .-.+ ++-+|.+.+
T Consensus 94 Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 94 GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEA 157 (225)
T ss_dssp CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 222111111 1368899999999999988764 2233 677887764
No 83
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.04 E-value=2.2e-10 Score=93.34 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=78.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEEcccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLLKWVL 232 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l~~vl 232 (276)
+.+.+|||+|||.|-++..++...|+.++++.|. +.+++.+++ ..++++ .|..+ +.|+ ||+|++.++|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4688999999999999999999999999999999 999988876 235666 67665 3444 9999999999
Q ss_pred cCCCcccc-------------------------------ccCHHHHHHhHhhCCCCceEEEecCC
Q 046375 233 HNWSDEAC-------------------------------ERTELEWKNIPEKGGSPRYRIIKIPA 266 (276)
Q Consensus 233 h~~~~~~~-------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~ 266 (276)
|..++.+. ++-...|++.+ ...+.+++...+++
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~-~~~~~~~~~~~~~n 189 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFT-KGWIKILDSKVIGN 189 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHT-TTTSCEEEEEEETT
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhc-cCcceeeeeeeeCc
Confidence 99943333 12366677777 55677777777765
No 84
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.02 E-value=3.1e-09 Score=90.14 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=62.1
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCCC-cc
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIPN-AD 224 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p~-~D 224 (276)
.++.... .....+|||||||+|.++..+++. +.+++++|+ |.+++.+++ ..+++++.+|+.+ +.++ +|
T Consensus 32 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 32 EIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc--ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 3444443 345689999999999999999987 568999999 888888765 3479999999987 5554 99
Q ss_pred EEEEc-ccccCCCc
Q 046375 225 ALLLK-WVLHNWSD 237 (276)
Q Consensus 225 ~i~l~-~vlh~~~~ 237 (276)
+|++. ..+|.+++
T Consensus 108 ~v~~~~~~~~~~~~ 121 (252)
T 1wzn_A 108 AVTMFFSTIMYFDE 121 (252)
T ss_dssp EEEECSSGGGGSCH
T ss_pred EEEEcCCchhcCCH
Confidence 99975 34454443
No 85
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.00 E-value=7e-10 Score=101.53 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=84.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC------CCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH------TIP-- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~------~~p-- 221 (276)
+..+++.+. .....+|||||||+|.++..++++ +.+++++|. +.+++.+++. .+......+.. +++
T Consensus 96 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 96 ARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 456667766 667789999999999999999987 448999999 8888887763 23333322211 232
Q ss_pred CccEEEEcccccCCCcccc----------------------------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 222 NADALLLKWVLHNWSDEAC----------------------------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~----------------------------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
.||+|++.+++|++++... ..+.++|.++++++||+++++
T Consensus 171 ~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 171 PANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp CEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred CEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 4999999999999987554 137899999999999999998
Q ss_pred EecC
Q 046375 262 IKIP 265 (276)
Q Consensus 262 ~~~~ 265 (276)
...+
T Consensus 251 ~~~~ 254 (416)
T 4e2x_A 251 QRLP 254 (416)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 7754
No 86
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.00 E-value=7.5e-10 Score=95.80 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=79.0
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC----C---CCeEEEEccCCCCCC-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDL-PHVITTAPV----Y---DGVTHVSGDMFHTIP- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~----~---~ri~~~~~d~~~~~p- 221 (276)
..++..++ .....+|||+|||+|.++..+++. +|..+++++|+ |.+++.+++ . ++++++.+|+.++++
T Consensus 100 ~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 177 (275)
T ss_dssp ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence 34555565 667789999999999999999998 78999999999 888877654 2 589999999998766
Q ss_pred -CccEEEEcccccCCCcccc------------------cc---CHHHHHHhHhhCCCCceEEEe
Q 046375 222 -NADALLLKWVLHNWSDEAC------------------ER---TELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~------------------~r---t~~e~~~ll~~aGf~~~~~~~ 263 (276)
.+|+|++ ++++... .. ...++.++++++||+.+++..
T Consensus 178 ~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 178 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred CCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3999998 3333322 12 356778889999999887754
No 87
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.00 E-value=3.9e-10 Score=96.27 Aligned_cols=112 Identities=13% Similarity=-0.021 Sum_probs=84.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CC-------------------------------
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YD------------------------------- 207 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~------------------------------- 207 (276)
.+..+|||||||+|.++..+++..+ .+++++|+ |.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999999998876 58999998 888887754 11
Q ss_pred -Ce-EEEEccCCC--CC-C----CccEEEEcccccCCCcc----cc----------------------------------
Q 046375 208 -GV-THVSGDMFH--TI-P----NADALLLKWVLHNWSDE----AC---------------------------------- 240 (276)
Q Consensus 208 -ri-~~~~~d~~~--~~-p----~~D~i~l~~vlh~~~~~----~~---------------------------------- 240 (276)
+| +++.+|+.+ ++ + .+|+|++..++|..++. ..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 28 999999987 22 2 39999999999943322 11
Q ss_pred --ccCHHHHHHhHhhCCCCceEEEecCC----------ccEEEEEec
Q 046375 241 --ERTELEWKNIPEKGGSPRYRIIKIPA----------LQCIIESYP 275 (276)
Q Consensus 241 --~rt~~e~~~ll~~aGf~~~~~~~~~~----------~~~vi~a~~ 275 (276)
..+.+++.++|+++||+++++...+. ...+|.|+|
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K 260 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRK 260 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecc
Confidence 02688999999999999988865431 245666765
No 88
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.99 E-value=6.8e-10 Score=94.31 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=86.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC---CccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP---NADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p---~~D~i~l~~v 231 (276)
+...+|+|||||+|.+++.+++..|..+++++|. |..++.+++ .+||++..+|.++.++ .+|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3568999999999999999999999999999999 888888765 5789999999998544 3999886543
Q ss_pred ----ccCCCcccc-------------ccCHHHHHHhHhhCCCCceEEEec--CC-ccEEEEEec
Q 046375 232 ----LHNWSDEAC-------------ERTELEWKNIPEKGGSPRYRIIKI--PA-LQCIIESYP 275 (276)
Q Consensus 232 ----lh~~~~~~~-------------~rt~~e~~~ll~~aGf~~~~~~~~--~~-~~~vi~a~~ 275 (276)
++..-++-. -.....++++|.+.||.+++..-. .+ ++-+|.+.+
T Consensus 100 Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~ 163 (244)
T 3gnl_A 100 GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIMVLAP 163 (244)
T ss_dssp CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 322211111 136889999999999998664322 33 677887764
No 89
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.99 E-value=9.3e-10 Score=95.94 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=73.4
Q ss_pred CCceEEEeeCCccHHHH----HHHHHCCCCeE--EEeec-hHHHhhCCC-------CCCeEE--EEccCCC-C------C
Q 046375 164 SLKSLVDVAGGIGGLIS----EIVKSYPHIKG--INFDL-PHVITTAPV-------YDGVTH--VSGDMFH-T------I 220 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~----~l~~~~p~l~~--~~~Dl-p~~~~~a~~-------~~ri~~--~~~d~~~-~------~ 220 (276)
...+|||||||+|.++. .++.++|+.++ +++|. ++|++.+++ ..++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997654 45667788854 99998 889887654 134544 4455432 1 3
Q ss_pred C--CccEEEEcccccCCCcccc--------------------------------------------ccCHHHHHHhHhhC
Q 046375 221 P--NADALLLKWVLHNWSDEAC--------------------------------------------ERTELEWKNIPEKG 254 (276)
Q Consensus 221 p--~~D~i~l~~vlh~~~~~~~--------------------------------------------~rt~~e~~~ll~~a 254 (276)
+ .||+|++++++|+++|... ..+.++|.++|+++
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 211 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence 3 3999999999999998664 02688999999999
Q ss_pred CCCceEE
Q 046375 255 GSPRYRI 261 (276)
Q Consensus 255 Gf~~~~~ 261 (276)
||+++..
T Consensus 212 Gf~~~~~ 218 (292)
T 2aot_A 212 GLKYECY 218 (292)
T ss_dssp TCCEEEE
T ss_pred CCceEEE
Confidence 9998764
No 90
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.97 E-value=5.6e-10 Score=92.00 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=74.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCC-------CCccEEEEc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTI-------PNADALLLK 229 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~-------p~~D~i~l~ 229 (276)
....+|||+|||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+++++.+|+.+++ ..+|+|+++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 889988876 117899999998743 349999995
Q ss_pred ccccC------CCcc--------------------cc---------------------ccCHHHHHHhHh--hCCCCceE
Q 046375 230 WVLHN------WSDE--------------------AC---------------------ERTELEWKNIPE--KGGSPRYR 260 (276)
Q Consensus 230 ~vlh~------~~~~--------------------~~---------------------~rt~~e~~~ll~--~aGf~~~~ 260 (276)
--+|. ++++ .. ....+++.++++ ++||..++
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEE
Confidence 33322 2211 00 246889999999 99999888
Q ss_pred EEec-CCccEEEEEec
Q 046375 261 IIKI-PALQCIIESYP 275 (276)
Q Consensus 261 ~~~~-~~~~~vi~a~~ 275 (276)
+... .+...++.+++
T Consensus 189 ~~~~~~~~~r~~~~~~ 204 (215)
T 4dzr_A 189 KVKDLRGIDRVIAVTR 204 (215)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred EEEecCCCEEEEEEEE
Confidence 7665 44445555543
No 91
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.97 E-value=8e-10 Score=91.92 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=53.3
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhh----CCC------CCCeEEEEccCCC-CCC-CccEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITT----APV------YDGVTHVSGDMFH-TIP-NADALL 227 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~----a~~------~~ri~~~~~d~~~-~~p-~~D~i~ 227 (276)
.....+|||||||+|.++..+++.+|+.+++++|+ |.+++. +++ .++++++.+|+.+ |++ +.|.|.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 45678999999999999999999999999999999 776654 222 4589999999988 554 236555
No 92
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.96 E-value=2.1e-09 Score=86.90 Aligned_cols=118 Identities=10% Similarity=0.103 Sum_probs=88.3
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CC--CeEEEEccCCCCCC--
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YD--GVTHVSGDMFHTIP-- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~--ri~~~~~d~~~~~p-- 221 (276)
.+++.+. .....+|||||||+|.++..+++. ..+++++|. |.+++.+++ .. |++++.+|+.++.+
T Consensus 43 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3455555 556789999999999999999998 779999998 888877765 22 59999999988654
Q ss_pred CccEEEEcccccCCCcc-cc---------------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 222 NADALLLKWVLHNWSDE-AC---------------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~-~~---------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
.+|+|++...+|...+. .. .....++.+.+++. |..+++......+.++.++|
T Consensus 119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 49999998887752111 11 12455688888887 77777777666677777765
No 93
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.96 E-value=5.7e-10 Score=94.45 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=77.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCC-------CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIP-------NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p-------~~D~i~l~ 229 (276)
.....+|||||||+|.++..+++.++ +++++|. |.+++.+++ ..+++++.+|+.+ +.+ .+|+|+++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34668999999999999999999988 7899998 888887765 4589999999988 222 28999999
Q ss_pred ccccCCCccccccCHHHHHHhHhhCCC
Q 046375 230 WVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 230 ~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
.++|+.++++......++.++|..-|.
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~ 158 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGA 158 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCE
Confidence 999999987776677777777777774
No 94
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.96 E-value=1.3e-09 Score=94.61 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CC-C--CccEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TI-P--NADALLLKW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~-p--~~D~i~l~~ 230 (276)
....+|||||||+|.++..+++. +..+++++|+ |.+++.+++ ..+++++.+|+.+ ++ + .+|+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 46789999999999999998876 5668999999 888887765 2579999999987 55 3 399999999
Q ss_pred cccC
Q 046375 231 VLHN 234 (276)
Q Consensus 231 vlh~ 234 (276)
++|+
T Consensus 142 ~l~~ 145 (298)
T 1ri5_A 142 SFHY 145 (298)
T ss_dssp CGGG
T ss_pred hhhh
Confidence 9987
No 95
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.95 E-value=4.2e-09 Score=89.74 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=58.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCC----CCCC-----CccEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMF----HTIP-----NADAL 226 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~----~~~p-----~~D~i 226 (276)
...+|||||||+|.++..+++++|+.+++++|+ |.+++.+++ .+|++++.+|.. ++++ .+|+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999999999999998 899887765 357999999953 3444 39999
Q ss_pred EEccccc
Q 046375 227 LLKWVLH 233 (276)
Q Consensus 227 ~l~~vlh 233 (276)
+++-..|
T Consensus 145 ~~npp~~ 151 (254)
T 2h00_A 145 MCNPPFF 151 (254)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9874444
No 96
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.1e-09 Score=95.80 Aligned_cols=91 Identities=24% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC--------CCCeEEEEccCCC-CCC--------Cc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV--------YDGVTHVSGDMFH-TIP--------NA 223 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~-~~p--------~~ 223 (276)
....+|||||||+|.++..+++++ |..+++++|+ |.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999997 8999999999 888887764 4689999999987 422 39
Q ss_pred cEEEEcccccCCCccccccCHHHHHHhHhhCCC
Q 046375 224 DALLLKWVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
|+|++..++|++ +......++.++|...|.
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~ 144 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLRKDGT 144 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEEEEEE
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcCCCcE
Confidence 999999999999 333455566666666553
No 97
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.95 E-value=1.3e-09 Score=92.89 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=83.1
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCCC
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIPN 222 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p~ 222 (276)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|+ |.+++.+++ .+|++++.+|+.++++.
T Consensus 83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 34555565 667889999999999999999999 89999999999 888888765 46699999999987663
Q ss_pred --ccEEEEcccccCCCcccc------------------c---cCHHHHHHhHhhCC--CCceEEEe
Q 046375 223 --ADALLLKWVLHNWSDEAC------------------E---RTELEWKNIPEKGG--SPRYRIIK 263 (276)
Q Consensus 223 --~D~i~l~~vlh~~~~~~~------------------~---rt~~e~~~ll~~aG--f~~~~~~~ 263 (276)
+|+|++ ++++... . ....++.+++++.| |..+++..
T Consensus 161 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTIN 221 (255)
T ss_dssp CSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred CCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEE
Confidence 999987 3343322 1 24667889999999 98877653
No 98
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.92 E-value=8.8e-10 Score=91.38 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=63.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC-CccEEEEcccccC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP-NADALLLKWVLHN 234 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p-~~D~i~l~~vlh~ 234 (276)
.....+|||||||+|.++..+++.. .+++++|+ |.+++.+++ .++++++.+|+.+ +.+ .+|+|++.+++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999985 47899999 888877765 4689999999988 323 4999999999999
Q ss_pred CCcc
Q 046375 235 WSDE 238 (276)
Q Consensus 235 ~~~~ 238 (276)
+++.
T Consensus 127 ~~~~ 130 (216)
T 3ofk_A 127 LEDM 130 (216)
T ss_dssp SSSH
T ss_pred CCCH
Confidence 9874
No 99
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.90 E-value=2.7e-09 Score=85.44 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=79.3
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCC----C
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTI----P 221 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~----p 221 (276)
++..+. .....+|||||||+|.++..+++.+|..+++++|. |.+++.+++ .+++ ++.+|..+++ +
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344444 56678999999999999999999999999999999 888887764 3478 8889987633 3
Q ss_pred CccEEEEcccccCCCc-ccc----------------ccCHHHHHHhHhhCCCCceEE
Q 046375 222 NADALLLKWVLHNWSD-EAC----------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~-~~~----------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
.+|+|++...+|+..- +++ ..+..++.++++..|+...++
T Consensus 94 ~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 94 NPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp CCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEE
T ss_pred CCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEE
Confidence 4999999999987110 111 125677888999999887664
No 100
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.90 E-value=4.1e-10 Score=95.38 Aligned_cols=98 Identities=14% Similarity=0.007 Sum_probs=73.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC---CCC--CccEEEE---
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH---TIP--NADALLL--- 228 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~---~~p--~~D~i~l--- 228 (276)
....+|||||||.|..+..+++..|. +++++|+ |.+++.+++ ..+++++.+|..+ +++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45789999999999999999988775 7899999 999988875 5578889888754 455 3888864
Q ss_pred --cccccCCCcccc-----------------------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 229 --KWVLHNWSDEAC-----------------------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 229 --~~vlh~~~~~~~-----------------------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
...++++++.+. ....+.+...|.++||+++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEEE
Confidence 455555555433 013556677888999997654
No 101
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.90 E-value=9.2e-10 Score=94.30 Aligned_cols=98 Identities=8% Similarity=-0.077 Sum_probs=79.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------------------CCCeEEEEccCCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----------------------YDGVTHVSGDMFH 218 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~d~~~ 218 (276)
....+|||||||+|..+..|+++ +.+++++|+ |.+++.+++ ..+|+++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 568999999 888877642 2589999999998
Q ss_pred -CC---CCccEEEEcccccCCCcccc----------------------------------ccCHHHHHHhHhhCCCCceE
Q 046375 219 -TI---PNADALLLKWVLHNWSDEAC----------------------------------ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 219 -~~---p~~D~i~l~~vlh~~~~~~~----------------------------------~rt~~e~~~ll~~aGf~~~~ 260 (276)
+. ..||+|+.+.++|..++++. ..+.+|+.++|+. +|+++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 43 24999999999999887653 0268999999988 598876
Q ss_pred EEe
Q 046375 261 IIK 263 (276)
Q Consensus 261 ~~~ 263 (276)
...
T Consensus 224 ~~~ 226 (252)
T 2gb4_A 224 LEE 226 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 643
No 102
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.90 E-value=1.4e-09 Score=94.35 Aligned_cols=105 Identities=14% Similarity=0.027 Sum_probs=83.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCCC-c
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIPN-A 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p~-~ 223 (276)
..+++.++ .....+|||||||+|.++..+++. +.+++++|. |.+++.+++ .-+++++.+|+.+ +.++ +
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34455554 346789999999999999999998 568999998 888887765 2289999999988 4454 9
Q ss_pred cEEEEcccccCCCcccc------------------------------------ccCHHHHHHhHhhCCCCceEEE
Q 046375 224 DALLLKWVLHNWSDEAC------------------------------------ERTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~------------------------------------~rt~~e~~~ll~~aGf~~~~~~ 262 (276)
|+|++..++|+++++.. ..+.+++.++++. |+++...
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 99999999999987663 1358889999865 8887763
No 103
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=98.88 E-value=1.4e-09 Score=93.49 Aligned_cols=112 Identities=14% Similarity=0.034 Sum_probs=80.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-------------------------------
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----Y------------------------------- 206 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~------------------------------- 206 (276)
....+|||||||+|.++..++...- .+++++|+ |.+++.+++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4568999999999988776665432 26999998 888886543 0
Q ss_pred CCeE-EEEccCCC--CC-----CCccEEEEcccccCCC-c-cc--c----------------------c-----------
Q 046375 207 DGVT-HVSGDMFH--TI-----PNADALLLKWVLHNWS-D-EA--C----------------------E----------- 241 (276)
Q Consensus 207 ~ri~-~~~~d~~~--~~-----p~~D~i~l~~vlh~~~-~-~~--~----------------------~----------- 241 (276)
.+|. ++.+|+.+ |+ +.||+|+++.+||+.. + ++ . .
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 1244 88999987 32 2499999999999742 2 11 1 0
Q ss_pred ---cCHHHHHHhHhhCCCCceEEEecC----------CccEEEEEec
Q 046375 242 ---RTELEWKNIPEKGGSPRYRIIKIP----------ALQCIIESYP 275 (276)
Q Consensus 242 ---rt~~e~~~ll~~aGf~~~~~~~~~----------~~~~vi~a~~ 275 (276)
.+.+++.++|+++||+++++...+ ....++.|+|
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K 259 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK 259 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEe
Confidence 279999999999999998876532 1345677776
No 104
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.87 E-value=3.4e-09 Score=87.25 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=79.7
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--CccEEEEcccccCC
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--NADALLLKWVLHNW 235 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~~ 235 (276)
..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ ..+++++.+|+.+..+ .+|+|++.. ++++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~-~~~~ 144 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA-FASL 144 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC-SSSH
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec-cCCH
Confidence 57999999999999999999999999999998 888877764 2459999999988433 499999654 3332
Q ss_pred Ccc--cc---------------ccCHHHHHHhHhhCCCCceEEE----ec-CCccEEEEEec
Q 046375 236 SDE--AC---------------ERTELEWKNIPEKGGSPRYRII----KI-PALQCIIESYP 275 (276)
Q Consensus 236 ~~~--~~---------------~rt~~e~~~ll~~aGf~~~~~~----~~-~~~~~vi~a~~ 275 (276)
..- .+ ....+++.+++. ||+.+++. +. .+...++.++|
T Consensus 145 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k 204 (207)
T 1jsx_A 145 NDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKA 204 (207)
T ss_dssp HHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEe
Confidence 110 00 246788888887 99988743 22 34566666654
No 105
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.86 E-value=8.7e-09 Score=85.51 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=75.5
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CC--CccEEEEccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IP--NADALLLKWV 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p--~~D~i~l~~v 231 (276)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ + ++ .+|+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467899999999999999999999999999998 888887765 3689999999987 3 54 3999998754
Q ss_pred ccCCCcc----------cc----------------c----cCHHHHHHhHhhCCCCceEEE
Q 046375 232 LHNWSDE----------AC----------------E----RTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 232 lh~~~~~----------~~----------------~----rt~~e~~~ll~~aGf~~~~~~ 262 (276)
.+ |... .. . ....+..++++++||+.+.+.
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 32 2221 11 0 124555788899999987765
No 106
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.85 E-value=1.3e-08 Score=85.63 Aligned_cols=111 Identities=8% Similarity=0.007 Sum_probs=78.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHh----hCCCCCCeEEEEccCCCC--C---C-CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVIT----TAPVYDGVTHVSGDMFHT--I---P-NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~----~a~~~~ri~~~~~d~~~~--~---p-~~D~i~l~ 229 (276)
+....+|||||||+|.++..+++.+ |..+++++|+ |.+++ .++...+++++.+|+.++ + + .+|+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999997 7889999998 66444 333357899999999872 2 2 39999984
Q ss_pred ccccCCCcccc---------------------c------cC----HHHHHHhHhhCCCCceEEEecCC---ccEEEEEec
Q 046375 230 WVLHNWSDEAC---------------------E------RT----ELEWKNIPEKGGSPRYRIIKIPA---LQCIIESYP 275 (276)
Q Consensus 230 ~vlh~~~~~~~---------------------~------rt----~~e~~~ll~~aGf~~~~~~~~~~---~~~vi~a~~ 275 (276)
.. .++... . .. ..+..++|+++||+++++..... .+.++.+++
T Consensus 155 ~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 155 VA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp CC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred CC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEEEe
Confidence 43 122111 0 01 11226899999999998776643 366666654
No 107
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.85 E-value=1.2e-09 Score=94.59 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=75.7
Q ss_pred CCceEEEeeCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhhCCCC----------------------------
Q 046375 164 SLKSLVDVAGGIGG----LISEIVKSYP----HIKGINFDL-PHVITTAPVY---------------------------- 206 (276)
Q Consensus 164 ~~~~vlDvGgG~G~----~~~~l~~~~p----~l~~~~~Dl-p~~~~~a~~~---------------------------- 206 (276)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 6667777756 468999999 8898876541
Q ss_pred ---------CCeEEEEccCCC-CCC---CccEEEEcccccCCCccccccCHHHHHHhHhhCCCCc
Q 046375 207 ---------DGVTHVSGDMFH-TIP---NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 207 ---------~ri~~~~~d~~~-~~p---~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~ 258 (276)
++|+|..+|+.+ |+| .+|+|+|++|+++++++...+-...+...|..-|+=.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~ 249 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLF 249 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 369999999998 565 4999999999999988776667777777777777543
No 108
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=98.84 E-value=1.6e-09 Score=92.82 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=82.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC--CccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP--NADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p--~~D~i~l~~vlh~ 234 (276)
....+|||+|||+|.++..+++..+ +++++|+ |.+++.+++ .-.+++..+|+.+++| .+|+|+++...|.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHHH
Confidence 4568999999999999999999766 9999999 888877765 1128999999877553 4999998755443
Q ss_pred CCccc--c----------------ccCHHHHHHhHhhCCCCceEEEecCCccEEEEEec
Q 046375 235 WSDEA--C----------------ERTELEWKNIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 235 ~~~~~--~----------------~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
...-- . ..+..++.++++++||+++++...++- ..+.++|
T Consensus 197 ~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W-~~l~~~k 254 (254)
T 2nxc_A 197 HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEW-VLLAYGR 254 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTE-EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCe-EEEEEEC
Confidence 21100 0 247899999999999999998876553 3444443
No 109
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.84 E-value=6.4e-09 Score=88.00 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=81.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CC----C-CccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TI----P-NADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~----p-~~D~i~l 228 (276)
+....+|||||||+|.++..++...|+.+++++|. +.+++.+++ ..+|+++.+|+.+ +. + .||+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34678999999999999999999999999999998 888887765 3479999999876 43 2 3999998
Q ss_pred cccccCCCcccc--------------------cc---CHHHHHHhHhhCCCCceEEEe--cC---CccEEEEEec
Q 046375 229 KWVLHNWSDEAC--------------------ER---TELEWKNIPEKGGSPRYRIIK--IP---ALQCIIESYP 275 (276)
Q Consensus 229 ~~vlh~~~~~~~--------------------~r---t~~e~~~ll~~aGf~~~~~~~--~~---~~~~vi~a~~ 275 (276)
..+ .+... .. ...++.+.+++.||+.+++.. .+ +...++.++|
T Consensus 148 ~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k 218 (240)
T 1xdz_A 148 RAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRK 218 (240)
T ss_dssp ECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred ecc----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEe
Confidence 764 22111 11 244577788999999877654 23 3455665544
No 110
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.84 E-value=1e-08 Score=84.04 Aligned_cols=91 Identities=10% Similarity=-0.021 Sum_probs=72.7
Q ss_pred eEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEEcccccCCCc
Q 046375 167 SLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP--NADALLLKWVLHNWSD 237 (276)
Q Consensus 167 ~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~ 237 (276)
+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .+|+|+++. .| ++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~~-~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF-CH-LPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC-CC-CCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh-hc-CCH
Confidence 9999999999999999987 568999998 888887765 3489999999987 555 399999853 33 343
Q ss_pred ccc---------------------------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 238 EAC---------------------------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 238 ~~~---------------------------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
++. ..+.+++.++|+ ||+++++..
T Consensus 108 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEE
Confidence 222 148999999999 999988644
No 111
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.83 E-value=3.3e-09 Score=91.19 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=76.1
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCC-C------C
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFH-T------I 220 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~-~------~ 220 (276)
...++..++ .....+|||||||+|.++..++++ ..+++++|+ |.+++.+++ ... ++.+++.+ + .
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGGG
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeeccccccccc
Confidence 345566666 667889999999999999999987 468999998 899988876 222 23333332 1 2
Q ss_pred C-CccEEEEcccccCCCccccccCHHHHHHhHhhCCCCceE
Q 046375 221 P-NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 221 p-~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~~ 260 (276)
+ .||+|++..++|+++.++..+...++.+++ .-|--.+.
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 3 499999999999998877767777888888 66643333
No 112
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.82 E-value=3e-08 Score=82.44 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=78.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHH----hhCCCCCCeEEEEccCCCC-----CCC-ccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVI----TTAPVYDGVTHVSGDMFHT-----IPN-ADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~----~~a~~~~ri~~~~~d~~~~-----~p~-~D~i~l~~ 230 (276)
.....+|||||||+|.++..+++..|+.+++++|+ |.++ +.++...++.++.+|..++ +++ +|+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999998779999998 7654 3333356799999998763 334 9999886
Q ss_pred cccCCCccc----c---------------------ccCHHHHH--H--hHhhCCCCceEEEecCC---ccEEEEEec
Q 046375 231 VLHNWSDEA----C---------------------ERTELEWK--N--IPEKGGSPRYRIIKIPA---LQCIIESYP 275 (276)
Q Consensus 231 vlh~~~~~~----~---------------------~rt~~e~~--~--ll~~aGf~~~~~~~~~~---~~~vi~a~~ 275 (276)
+.+...... . ..+.+++. . .|+++ |++++...... .+.+|.++|
T Consensus 134 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 134 IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred ccChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 332211111 0 02344442 2 27888 99999887733 567888775
No 113
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.82 E-value=4.4e-09 Score=84.86 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=78.1
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCC---CC
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTI---PN 222 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~---p~ 222 (276)
++..++ .....+|||+|||+|.++..+++.. .+++++|. |.+++.+++ .++++++.+|+.+++ +.
T Consensus 25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 334444 5667899999999999999999987 78999998 888877765 268999999987633 35
Q ss_pred ccEEEEcccccCCCcccc------------------ccCHHHHHHhHhhCCCCce
Q 046375 223 ADALLLKWVLHNWSDEAC------------------ERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~------------------~rt~~e~~~ll~~aGf~~~ 259 (276)
+|+|++..++|++..--. ..+..++.+++++.||.+.
T Consensus 101 ~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 999999988775421111 1357788999999999543
No 114
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.82 E-value=1.9e-08 Score=86.12 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=83.9
Q ss_pred CC-CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-C--CC--CccEEE
Q 046375 162 FD-SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-T--IP--NADALL 227 (276)
Q Consensus 162 ~~-~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~--~p--~~D~i~ 227 (276)
.. ...+|||+|||+|.++..++++.+. +++++|+ |.+++.+++ .+|++++.+|+.+ + ++ .+|+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999876 9999999 888887765 4689999999987 2 43 399999
Q ss_pred EcccccCC------Cc-c--------------cc-------------------ccCHHHHHHhHhhCCCCceEEEec---
Q 046375 228 LKWVLHNW------SD-E--------------AC-------------------ERTELEWKNIPEKGGSPRYRIIKI--- 264 (276)
Q Consensus 228 l~~vlh~~------~~-~--------------~~-------------------~rt~~e~~~ll~~aGf~~~~~~~~--- 264 (276)
++-.++.. +. + +. .....++..++.+.||...++.+.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 204 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPR 204 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEEEEEESS
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEEEEeecC
Confidence 86433222 10 0 00 246888999999999998876544
Q ss_pred C---CccEEEEEec
Q 046375 265 P---ALQCIIESYP 275 (276)
Q Consensus 265 ~---~~~~vi~a~~ 275 (276)
. ....+++++|
T Consensus 205 ~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 205 SDREANTVLVEGIK 218 (259)
T ss_dssp TTSCCSEEEEEEEE
T ss_pred CCCCcEEEEEEEEe
Confidence 2 2467777765
No 115
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.81 E-value=1e-08 Score=85.85 Aligned_cols=96 Identities=7% Similarity=-0.063 Sum_probs=76.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC--CCC---CccEEEEcccccCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH--TIP---NADALLLKWVLHNW 235 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~--~~p---~~D~i~l~~vlh~~ 235 (276)
....+|||||||+|.++..+++. +.+++++|+ |.+++.+++ ..+++++.+|+.+ |++ .+|+|+++. +.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---~~ 121 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---GP 121 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES---CC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC---CH
Confidence 45689999999999999999998 578999999 889988876 6789999999976 444 399999872 11
Q ss_pred Ccc--cc---------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 236 SDE--AC---------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 236 ~~~--~~---------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
..- ++ ..+..++.++++++||....+..
T Consensus 122 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 122 TSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp SGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 110 00 13788999999999999877654
No 116
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.81 E-value=1.2e-08 Score=89.67 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=82.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC-C---CC-CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH-T---IP-NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~-~---~p-~~D~i 226 (276)
+.+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .+|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999878889999999 888877654 3689999999876 2 13 39999
Q ss_pred EEcccccCCCccc-----c------------------------ccCHHHHHHhHhhCCCCceEEEec--C----CccEEE
Q 046375 227 LLKWVLHNWSDEA-----C------------------------ERTELEWKNIPEKGGSPRYRIIKI--P----ALQCII 271 (276)
Q Consensus 227 ~l~~vlh~~~~~~-----~------------------------~rt~~e~~~ll~~aGf~~~~~~~~--~----~~~~vi 271 (276)
++....+.+++.. . .....++.+.++++||..+++... + +..+.+
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~ 253 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTL 253 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEE
Confidence 9977666655331 1 024678899999999998887654 2 345566
Q ss_pred EEec
Q 046375 272 ESYP 275 (276)
Q Consensus 272 ~a~~ 275 (276)
.|.+
T Consensus 254 ~as~ 257 (304)
T 3bwc_A 254 VCSK 257 (304)
T ss_dssp EEES
T ss_pred EEeC
Confidence 5654
No 117
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.80 E-value=3.6e-09 Score=87.06 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=79.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEEccccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP--NADALLLKWVLH 233 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh 233 (276)
....+|||||||+|.++..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .+|+|++.+++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 45689999999999986655544 5779999998 888887765 4679999999987 665 399999999999
Q ss_pred CCCccccccCHHHHHHhHhhCCCCceEEEe
Q 046375 234 NWSDEACERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 234 ~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
+++.++......++.++|..-|.-+.....
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 997666666777888888887765555443
No 118
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.80 E-value=1.6e-08 Score=83.31 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=61.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEEcccccCCCc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHI-KGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP--NADALLLKWVLHNWSD 237 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l-~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~~ 237 (276)
...+|||||||+|.++..+ +. +++++|. |.+++.+++ ..+++++.+|+.+ |++ .+|+|++.+++|++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999999888 45 8999998 888887776 5789999999987 665 3999999999999986
Q ss_pred ccc
Q 046375 238 EAC 240 (276)
Q Consensus 238 ~~~ 240 (276)
...
T Consensus 111 ~~~ 113 (211)
T 2gs9_A 111 VER 113 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 119
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.79 E-value=1.7e-08 Score=83.48 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=78.2
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CC-CeEEEEccCCCC---CCC
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YD-GVTHVSGDMFHT---IPN 222 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~-ri~~~~~d~~~~---~p~ 222 (276)
++..++ .....+|||||||+|.++..++++ ..+++++|+ |.+++.+++ .+ +++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344455 566789999999999999999998 789999999 888887765 23 899999999873 346
Q ss_pred ccEEEEcccccCCCcccc--------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 223 ADALLLKWVLHNWSDEAC--------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~--------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+|+|++...+ +.+ . ..+..++.+++++.||++.++
T Consensus 123 ~D~v~~~~~~---~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 123 PEAVFIGGGG---SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CSEEEECSCC---CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEECCcc---cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence 9999987644 222 2 135778888999999887775
No 120
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.79 E-value=1.8e-08 Score=85.66 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=80.6
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p 221 (276)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|. |.+++.+++ .++++++.+|+.+ +++
T Consensus 86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 34566666 677889999999999999999999 78899999998 888877765 2689999999988 466
Q ss_pred --CccEEEEcccccCCCcc-cc-----------------cc---CHHHHHHhHhhCCCCceEEEe
Q 046375 222 --NADALLLKWVLHNWSDE-AC-----------------ER---TELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 222 --~~D~i~l~~vlh~~~~~-~~-----------------~r---t~~e~~~ll~~aGf~~~~~~~ 263 (276)
.+|+|++. +++. .. .. ...++.+.|+++||..+++..
T Consensus 164 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 164 EAAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp TTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred CCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEE
Confidence 39999972 3333 22 12 355677788889999766543
No 121
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=98.78 E-value=2.5e-08 Score=85.97 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=59.8
Q ss_pred CCceEEEeeCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCC---C--C----Ccc
Q 046375 164 SLKSLVDVAGGI---GGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHT---I--P----NAD 224 (276)
Q Consensus 164 ~~~~vlDvGgG~---G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~---~--p----~~D 224 (276)
+..+|||||||. |.....+.+..|+.+++.+|. |.|++.++. ..+++++.+|+.++ + | .+|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 568999999996 344444455689999999999 999998876 24799999999873 1 1 244
Q ss_pred -----EEEEcccccCCCccc
Q 046375 225 -----ALLLKWVLHNWSDEA 239 (276)
Q Consensus 225 -----~i~l~~vlh~~~~~~ 239 (276)
+++++.+||+.++++
T Consensus 158 ~~~p~av~~~avLH~l~d~~ 177 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDED 177 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGG
T ss_pred cCCcchHHhhhhHhcCCchh
Confidence 688999999999865
No 122
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.78 E-value=2.5e-08 Score=84.22 Aligned_cols=112 Identities=11% Similarity=0.069 Sum_probs=81.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCCC----CC--CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFHT----IP--NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~~----~p--~~D~i~l~ 229 (276)
+....+|||+|||+|.++..+++.. |+-+++++|. |.+++.+++ ..++..+.+|..+| .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 6778999999999999999999985 9999999998 888876543 57899999988763 22 38988753
Q ss_pred ccccCCCcccc-----------------------------ccCHHHHHHhHhhCCCCceEEEecCC---ccEEEEEe
Q 046375 230 WVLHNWSDEAC-----------------------------ERTELEWKNIPEKGGSPRYRIIKIPA---LQCIIESY 274 (276)
Q Consensus 230 ~vlh~~~~~~~-----------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~---~~~vi~a~ 274 (276)
. .|.+..+.. ....++-.+.|+++||+.++...+.+ .+.++.++
T Consensus 155 ~-~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 155 V-AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp C-CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred c-cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence 2 222211121 01244556778899999999888754 46777665
No 123
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.77 E-value=9.9e-09 Score=82.20 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=78.4
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--Ccc
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--NAD 224 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D 224 (276)
++..++ .....+|||||||+|.++..+++ +..+++++|. |.+++.+++ .++++++.+|+.+++| .+|
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 344444 55678999999999999999999 8889999998 888887765 2689999999988655 499
Q ss_pred EEEEcccccCCCcccc----------------ccCHHHHHHhHhhCCCCceEE
Q 046375 225 ALLLKWVLHNWSDEAC----------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 225 ~i~l~~vlh~~~~~~~----------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+|++..+ ++..+--. ..+..++.++++++||.+..+
T Consensus 103 ~i~~~~~-~~~~~~l~~~~~~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 103 KAFIGGT-KNIEKIIEILDKKKINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp EEEECSC-SCHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCc-ccHHHHHHHHhhCCCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 9999887 22211000 124677899999999876554
No 124
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.77 E-value=8.3e-09 Score=88.11 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=81.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CC----C-CccEEEEc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TI----P-NADALLLK 229 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~----p-~~D~i~l~ 229 (276)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+|+++.+|+.+ +. + .||+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999998 888887765 3469999999876 32 2 49999987
Q ss_pred ccccCCCc--ccc---------------ccC---HHHHHHhHhhCCCCceEEEec--C---CccEEEEEec
Q 046375 230 WVLHNWSD--EAC---------------ERT---ELEWKNIPEKGGSPRYRIIKI--P---ALQCIIESYP 275 (276)
Q Consensus 230 ~vlh~~~~--~~~---------------~rt---~~e~~~ll~~aGf~~~~~~~~--~---~~~~vi~a~~ 275 (276)
.+- +++. +.+ ... ..++.+.++..||...++.+. + ..+.++...|
T Consensus 159 a~~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 159 AVA-PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp SSC-CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CcC-CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 542 2211 001 122 344677788889998887654 2 3466666654
No 125
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=98.76 E-value=3.6e-09 Score=91.96 Aligned_cols=100 Identities=15% Similarity=0.042 Sum_probs=73.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CC---------------------------------
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YD--------------------------------- 207 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~--------------------------------- 207 (276)
...+|||||||+|.++ .++...+..+++++|+ |.+++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 4444445669999999 888876543 10
Q ss_pred -CeEEEEccCCC--C-----CCC--ccEEEEcccccCCCcc----cc---------------------------------
Q 046375 208 -GVTHVSGDMFH--T-----IPN--ADALLLKWVLHNWSDE----AC--------------------------------- 240 (276)
Q Consensus 208 -ri~~~~~d~~~--~-----~p~--~D~i~l~~vlh~~~~~----~~--------------------------------- 240 (276)
.++++.+|+.+ | +|. ||+|+++.++|..+++ ..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 14567778876 2 222 9999999999985433 21
Q ss_pred ---ccCHHHHHHhHhhCCCCceEEEec
Q 046375 241 ---ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 241 ---~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
..+.++|.++|+++||+++++...
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 027999999999999998887543
No 126
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.76 E-value=4e-09 Score=89.86 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=83.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCC-CCC-ccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHT-IPN-ADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~-~D~i~l~~vlh~ 234 (276)
..+.+|||||||.|-++..+....|+.+++++|. +.+++.+++ .-+.++...|+..+ .|+ +|++++.-++|.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4588999999999999999999999999999999 888888776 45688999999984 444 999999999999
Q ss_pred CCcccc--------------------c-----c-------CHHHHHHhHhhCCCCceEEEecCC
Q 046375 235 WSDEAC--------------------E-----R-------TELEWKNIPEKGGSPRYRIIKIPA 266 (276)
Q Consensus 235 ~~~~~~--------------------~-----r-------t~~e~~~ll~~aGf~~~~~~~~~~ 266 (276)
..+++. . | -...|.+++.+.|..+. ...+++
T Consensus 211 Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~-~~~~~n 273 (281)
T 3lcv_B 211 LETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQ-RLEIGN 273 (281)
T ss_dssp HHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEE-EEEETT
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCcee-eeeecC
Confidence 988765 1 1 26778888888898444 444444
No 127
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.75 E-value=2.2e-08 Score=86.45 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=80.9
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p- 221 (276)
..++..++ .....+|||+|||+|.++..++++ .|..+++++|. |.+++.+++ .++++++.+|+.+.++
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34556666 667789999999999999999999 78999999998 888887765 2689999999988665
Q ss_pred -CccEEEEcccccCCCcc-cc-----------------cc---CHHHHHHhHhhCCCCceEEEe
Q 046375 222 -NADALLLKWVLHNWSDE-AC-----------------ER---TELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~-~~-----------------~r---t~~e~~~ll~~aGf~~~~~~~ 263 (276)
.+|+|++. .++. .. .. ...++.+.|+++||..+++..
T Consensus 180 ~~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 180 KDVDALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp CSEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred CccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEE
Confidence 39999872 3333 22 12 355677888889998777643
No 128
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.75 E-value=5.6e-08 Score=81.24 Aligned_cols=104 Identities=12% Similarity=-0.033 Sum_probs=77.7
Q ss_pred CCCCceEEEeeCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccC--CCCCC--CccEEEEcc
Q 046375 162 FDSLKSLVDVAGG-IGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDM--FHTIP--NADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~--~~~~p--~~D~i~l~~ 230 (276)
.....+||||||| +|.++..+++.. ..+++++|. |.+++.+++ .-+++++.+|+ +.+++ .+|+|+++-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 778999999 888888765 23899999996 34555 399999876
Q ss_pred cccCCCcc--------------------cc---------------------ccCHHHHHHhHhhCCCCceEEEecCC
Q 046375 231 VLHNWSDE--------------------AC---------------------ERTELEWKNIPEKGGSPRYRIIKIPA 266 (276)
Q Consensus 231 vlh~~~~~--------------------~~---------------------~rt~~e~~~ll~~aGf~~~~~~~~~~ 266 (276)
.+|..++. .. .....++.+++++.||.+..+....+
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCC
Confidence 66554431 11 02467889999999998777655544
No 129
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.74 E-value=2.6e-09 Score=92.75 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=69.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC-C---CC--CccE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH-T---IP--NADA 225 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~-~---~p--~~D~ 225 (276)
.+..+|||||||+|.++..+++.. .+++++|+ |.+++.+++ ..++.+..+|+.+ + ++ .+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 456899999999999999999984 48999998 888887753 3578899999987 4 44 3999
Q ss_pred EEEc-ccccCCCc-----cccccCHHHHHHhHhhCC
Q 046375 226 LLLK-WVLHNWSD-----EACERTELEWKNIPEKGG 255 (276)
Q Consensus 226 i~l~-~vlh~~~~-----~~~~rt~~e~~~ll~~aG 255 (276)
|++. +++|++++ ++......++.++|..-|
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG 169 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 169 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCe
Confidence 9998 99999988 333333444444444444
No 130
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.74 E-value=2e-08 Score=84.59 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=77.6
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP-- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p-- 221 (276)
...+++.++ .....+|||||||+|.++..+++..| .+++++|. |.+++.+++ .++++++.+|+..+++
T Consensus 80 ~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 80 VAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 344555555 66778999999999999999999998 89999997 888887765 3469999999865655
Q ss_pred C-ccEEEEcccccCCCccccccCHHHHHHhHhhCCCCceEE
Q 046375 222 N-ADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 222 ~-~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 261 (276)
+ +|+|++..++|.+++ ++.++|..-|.-++.+
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPV 189 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEE
Confidence 3 899999999988764 5666776666444333
No 131
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=2.4e-08 Score=82.67 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=75.8
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC---
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--- 221 (276)
.++..+. .....+|||||||+|.++..+++.. |+.+++++|. |.+++.+++ .++++++.+|+..+++
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 3444444 5667899999999999999999998 7789999998 888887765 3579999999976554
Q ss_pred CccEEEEcccccCCCccccccCHHHHHHhHhhCCCCc
Q 046375 222 NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPR 258 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~ 258 (276)
.+|+|++..++|++++ ++.++|...|.-+
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv 174 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKDGGKLL 174 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEEEEEEE
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCCCcEEE
Confidence 4999999999998763 5666666666433
No 132
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.73 E-value=1.5e-08 Score=91.96 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=66.1
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---------------CCCeEEEEc
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---------------YDGVTHVSG 214 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------------~~ri~~~~~ 214 (276)
+..+++.++ .....+|||||||+|.++..++..++..+++++|+ |.+++.+++ .++|+|+.+
T Consensus 162 i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 162 VAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 455666666 67789999999999999999999988777999999 777765542 278999999
Q ss_pred cCCC-CC----CCccEEEEccccc
Q 046375 215 DMFH-TI----PNADALLLKWVLH 233 (276)
Q Consensus 215 d~~~-~~----p~~D~i~l~~vlh 233 (276)
|+++ |+ +.+|+|+++++++
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F 263 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAF 263 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTC
T ss_pred cccCCccccccCCccEEEEccccc
Confidence 9998 54 3599999988764
No 133
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.73 E-value=8.2e-09 Score=100.48 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=74.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------------CCCeEEEEccCCC-CCC--CccE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------------YDGVTHVSGDMFH-TIP--NADA 225 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------------~~ri~~~~~d~~~-~~p--~~D~ 225 (276)
....+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+|+++.+|+.+ +++ .||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 467899999999999999999998 5679999999 888877743 3579999999988 554 4999
Q ss_pred EEEcccccCCCccccccCHHHHHHhHhh
Q 046375 226 LLLKWVLHNWSDEACERTELEWKNIPEK 253 (276)
Q Consensus 226 i~l~~vlh~~~~~~~~rt~~e~~~ll~~ 253 (276)
|++..++|+++++...+-..++.++|..
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKP 827 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHP 827 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCC
Confidence 9999999999987754455555666654
No 134
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.73 E-value=7.2e-08 Score=82.69 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCCC--------CC-
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFHT--------IP- 221 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~~--------~p- 221 (276)
.....+|||+|||+|.++..+++++|..+++++|+ |.+++.+++ .+|++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 888876654 13799999999874 33
Q ss_pred -CccEEEEc
Q 046375 222 -NADALLLK 229 (276)
Q Consensus 222 -~~D~i~l~ 229 (276)
.||+|+++
T Consensus 114 ~~fD~Vv~n 122 (260)
T 2ozv_A 114 EHFHHVIMN 122 (260)
T ss_dssp TCEEEEEEC
T ss_pred CCcCEEEEC
Confidence 39999997
No 135
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.73 E-value=3e-08 Score=81.74 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=75.9
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC---Cc
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP---NA 223 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p---~~ 223 (276)
++..++ .....+|||||||+|.++..+++. ..+++++|. |.+++.+++ ..+++++.+|..+..+ .|
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 444555 567889999999999999999998 678999998 888887765 3579999999988432 49
Q ss_pred cEEEEcccccCCCccccccCHHHHHHhHhhCCCCceE
Q 046375 224 DALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~~ 260 (276)
|+|++..++|++++ ++.++|...|.=++.
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLP 173 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEE
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEE
Confidence 99999999998875 577777777744443
No 136
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.72 E-value=9.2e-08 Score=79.87 Aligned_cols=111 Identities=9% Similarity=0.057 Sum_probs=79.5
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhC----CCCCCeEEEEccCCCC-----CC-CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTA----PVYDGVTHVSGDMFHT-----IP-NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a----~~~~ri~~~~~d~~~~-----~p-~~D~i~l~ 229 (276)
+....+|||+|||+|.++..+++.. |+.+++++|. |.+++.+ +..++++++.+|+.++ ++ .+|+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5567899999999999999999985 6789999998 7665544 3357899999999872 33 49999965
Q ss_pred ccccCCCccc-c----------------------cc-------CHHHHHHhHhhCCCCceEEEecCCc---cEEEEEec
Q 046375 230 WVLHNWSDEA-C----------------------ER-------TELEWKNIPEKGGSPRYRIIKIPAL---QCIIESYP 275 (276)
Q Consensus 230 ~vlh~~~~~~-~----------------------~r-------t~~e~~~ll~~aGf~~~~~~~~~~~---~~vi~a~~ 275 (276)
.. +.+.... . .. ..+++.++ .++ |+.++....+.. +.++.+++
T Consensus 151 ~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 151 VA-QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp CC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CC-CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence 43 1111111 0 00 24677777 777 999998887544 77777765
No 137
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.72 E-value=3e-08 Score=83.31 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=46.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec--hHHHhhC---CC------CCCeEEEEccCCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL--PHVITTA---PV------YDGVTHVSGDMFH 218 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl--p~~~~~a---~~------~~ri~~~~~d~~~ 218 (276)
....+|||||||+|.++..+++++|+.+++++|+ +.+++.+ ++ ..+++++.+|..+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 4568999999999999999999999999999998 4555544 43 3579999999876
No 138
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.71 E-value=8e-09 Score=87.05 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=55.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC---CCC--CccEEEE-cc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH---TIP--NADALLL-KW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~---~~p--~~D~i~l-~~ 230 (276)
....+|||||||+|.++..+++..+ .+++++|+ |.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 3568999999999999999976544 38999999 889887765 3679999999875 465 3999998 55
Q ss_pred c
Q 046375 231 V 231 (276)
Q Consensus 231 v 231 (276)
.
T Consensus 138 ~ 138 (236)
T 1zx0_A 138 P 138 (236)
T ss_dssp C
T ss_pred c
Confidence 5
No 139
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.70 E-value=9.6e-09 Score=95.84 Aligned_cols=87 Identities=20% Similarity=0.127 Sum_probs=69.6
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPN 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~ 222 (276)
...++..+. ..+..+|||||||+|.++..+++ .|..+++++|+..+++.+++ .++|+++.+|+.+ ++|+
T Consensus 147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 455666655 45678999999999999998887 67889999999557776654 3789999999998 6765
Q ss_pred -ccEEEEcccccCCCcccc
Q 046375 223 -ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 223 -~D~i~l~~vlh~~~~~~~ 240 (276)
+|+|++..++|.+.+++.
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~ 242 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERM 242 (480)
T ss_dssp CEEEEECCCCHHHHTCHHH
T ss_pred CeEEEEEeCchHhcCcHHH
Confidence 999999888787765543
No 140
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.70 E-value=3e-08 Score=80.90 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=59.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-C-C-C-CccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-T-I-P-NADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~-~-p-~~D~i~l 228 (276)
.....+|||+|||+|.++..+++++ |..+++++|. |.+++.+++ .++++++.+|+.+ + . + .+|+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4466899999999999999999986 7789999999 888888765 2689999999876 2 3 3 3999998
Q ss_pred cccc
Q 046375 229 KWVL 232 (276)
Q Consensus 229 ~~vl 232 (276)
...+
T Consensus 100 ~~~~ 103 (197)
T 3eey_A 100 NLGY 103 (197)
T ss_dssp EESB
T ss_pred cCCc
Confidence 7655
No 141
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.70 E-value=1.5e-07 Score=79.45 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHH----hhCCCCCCeEEEEccCCCC-----CC-CccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVI----TTAPVYDGVTHVSGDMFHT-----IP-NADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~----~~a~~~~ri~~~~~d~~~~-----~p-~~D~i~l~ 229 (276)
+....+|||+|||+|.++..+++.. |+.+++++|+ |.++ +.+++..+|.++.+|...+ ++ .+|+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5677999999999999999999874 6889999998 7664 3333357899999999763 22 49999876
Q ss_pred ccccCCCccc-c------------------------------ccCHHHHHHhHhhCCCCceEEEecCC---ccEEEEEec
Q 046375 230 WVLHNWSDEA-C------------------------------ERTELEWKNIPEKGGSPRYRIIKIPA---LQCIIESYP 275 (276)
Q Consensus 230 ~vlh~~~~~~-~------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~---~~~vi~a~~ 275 (276)
... ++.. . +...++..+.|+++||+..++..+.+ .+.+|.+++
T Consensus 154 ~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 154 IAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp CCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred CCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence 433 2211 1 01235556778889999999988854 478888775
No 142
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.70 E-value=8.2e-09 Score=85.00 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC--CccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP--NADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~ 234 (276)
....+|||||||+|.++..+++..+. +++++|+ |.+++.+++ ..+++++.+|+.+ +++ .+|+|++..++|.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 46689999999999999999998765 8999998 888887765 3689999999988 665 3999999888875
Q ss_pred CC
Q 046375 235 WS 236 (276)
Q Consensus 235 ~~ 236 (276)
..
T Consensus 120 ~~ 121 (215)
T 2pxx_A 120 LL 121 (215)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 143
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.69 E-value=3.9e-08 Score=81.75 Aligned_cols=67 Identities=27% Similarity=0.326 Sum_probs=56.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CC--CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IP--NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p--~~D~i~l~~ 230 (276)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+|+++.+|+.+ + ++ .+|.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 457899999999999999999999999999998 888877754 3679999999987 3 55 389887654
No 144
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.69 E-value=1e-08 Score=90.09 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------
Q 046375 137 KIFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---------- 205 (276)
Q Consensus 137 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------- 205 (276)
+.|+.++... ....+++.+........+|||||||+|.++..+++ .+..+++++|+ +.+++.+++
T Consensus 10 r~~~~~~k~~---l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 85 (313)
T 3bgv_A 10 RNFNNWMKSV---LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRD 85 (313)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSC
T ss_pred hhccHHHHHH---HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhccc
Confidence 4566665542 23334443331234678999999999999999998 46779999998 888877654
Q ss_pred ---CCCeEEEEccCCC-C----C--C--CccEEEEcccccCC
Q 046375 206 ---YDGVTHVSGDMFH-T----I--P--NADALLLKWVLHNW 235 (276)
Q Consensus 206 ---~~ri~~~~~d~~~-~----~--p--~~D~i~l~~vlh~~ 235 (276)
..+++++.+|+.+ + + + .+|+|++..++|..
T Consensus 86 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~ 127 (313)
T 3bgv_A 86 SEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYS 127 (313)
T ss_dssp C-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGG
T ss_pred ccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhc
Confidence 1379999999987 3 4 3 49999999999987
No 145
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.68 E-value=1.8e-08 Score=90.15 Aligned_cols=86 Identities=20% Similarity=0.141 Sum_probs=67.5
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCC-
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPN- 222 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~- 222 (276)
..++..+. ..+..+|||||||+|.++..++++ +..+++++|...+++.+++ .++|+++.+|+.+ ++|+
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 34455554 456789999999999999999885 6679999999557666554 3789999999988 6664
Q ss_pred ccEEEEcccccCCCcccc
Q 046375 223 ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~ 240 (276)
+|+|++..++|++..+..
T Consensus 117 ~D~Ivs~~~~~~~~~~~~ 134 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERM 134 (348)
T ss_dssp EEEEEECCCBTTBTTTSH
T ss_pred eeEEEEeCchhcCChHHH
Confidence 999999988888776543
No 146
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.68 E-value=3.7e-08 Score=89.09 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=65.9
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C--CCeEEEEccCCCCCC-
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------Y--DGVTHVSGDMFHTIP- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~--~ri~~~~~d~~~~~p- 221 (276)
.+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++ . .+++++.+|++++++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3556665 44458999999999999999999999999999999 888888765 1 268999999999776
Q ss_pred -CccEEEEcccccC
Q 046375 222 -NADALLLKWVLHN 234 (276)
Q Consensus 222 -~~D~i~l~~vlh~ 234 (276)
.||+|+++-.+|.
T Consensus 291 ~~fD~Ii~nppfh~ 304 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQ 304 (375)
T ss_dssp TCEEEEEECCCC--
T ss_pred CCeeEEEECCCccc
Confidence 3999999988885
No 147
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.68 E-value=1.8e-08 Score=87.69 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=57.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCC-Cc---cEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIP-NA---DALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p-~~---D~i~l~ 229 (276)
...+|||||||+|.++..+++. |+.+++++|+ +.+++.+++ .+|++++.+|++++++ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence 4579999999999999999999 9999999999 888888765 3479999999998665 48 999986
No 148
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.68 E-value=3.6e-08 Score=83.08 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-CccEEEEccccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP-NADALLLKWVLH 233 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p-~~D~i~l~~vlh 233 (276)
...+|||+|||+|.++..+++.. .+++++|+ |.+++.+++ .++++++.+|+.+ +.+ .+|+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 56899999999999999999974 78999999 888888765 1589999999987 322 499999999998
Q ss_pred CCCcccc---------------------------------ccCHHHHHHhHhhCCCCceEEEecCC
Q 046375 234 NWSDEAC---------------------------------ERTELEWKNIPEKGGSPRYRIIKIPA 266 (276)
Q Consensus 234 ~~~~~~~---------------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~ 266 (276)
..++... ....+++..++...|...+......+
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~~ 221 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNN 221 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEETT
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEehhhcC
Confidence 8766542 01568888999888866555554444
No 149
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.67 E-value=5.4e-08 Score=81.41 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=72.2
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCCCCC---Cc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFHTIP---NA 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~~~p---~~ 223 (276)
..++..+. .....+|||||||+|.++..+++.. .+++++|. |.+++.+++ .++++++.+|+.+.++ .+
T Consensus 60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 34455555 5667899999999999999999986 68999998 888887765 2389999999987433 49
Q ss_pred cEEEEcccccCCCccccccCHHHHHHhHhhCC
Q 046375 224 DALLLKWVLHNWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aG 255 (276)
|+|++..++|++++ ++.++|...|
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~pgG 159 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKEGG 159 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEE
T ss_pred cEEEECCcHHHHHH--------HHHHHcCCCc
Confidence 99999999998864 4555555555
No 150
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.66 E-value=8.4e-09 Score=92.12 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=65.8
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC-Ccc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP-NAD 224 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p-~~D 224 (276)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .-+++++.+|+++..+ .+|
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44556664 33457999999999999999999999999999999 888887765 3346789999987444 499
Q ss_pred EEEEcccccC
Q 046375 225 ALLLKWVLHN 234 (276)
Q Consensus 225 ~i~l~~vlh~ 234 (276)
+|+++.++|+
T Consensus 264 ~Iv~~~~~~~ 273 (343)
T 2pjd_A 264 MIISNPPFHD 273 (343)
T ss_dssp EEEECCCCCS
T ss_pred EEEECCCccc
Confidence 9999999986
No 151
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.65 E-value=5.6e-08 Score=79.59 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=72.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCCCCC-CccEEEEcccccCCCcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFHTIP-NADALLLKWVLHNWSDE 238 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~~~p-~~D~i~l~~vlh~~~~~ 238 (276)
.....+|||+|||+|.++..+++. +..+++++|+ |.+++.+++ ..+++++.+|+.+ +| .+|+|++...+|.+++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999987 5557999999 889888776 3489999999987 44 59999999999988753
Q ss_pred cc-------------------ccCHHHHHHhHhhCCCCceEE
Q 046375 239 AC-------------------ERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 239 ~~-------------------~rt~~e~~~ll~~aGf~~~~~ 261 (276)
.. ..+...+.+++...| +...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 127 SDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp -CHHHHHHHHHHEEEEEEEEEGGGHHHHHHHHHHHE-EEEEE
T ss_pred hhHHHHHHHHHhcCcEEEEEcCchHHHHHHHHHHCC-CEEEE
Confidence 22 135677788888888 54443
No 152
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.65 E-value=3.7e-08 Score=85.88 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=59.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCCCccEEEEccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIPNADALLLKWV 231 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p~~D~i~l~~v 231 (276)
.....+|||||||+|.++..++.+.|+.+++++|+ |++++.|++ .++|+++.+|..+ +-..||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC
Confidence 66889999999999998877777789999999999 999998876 3799999999987 4225999998654
No 153
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.64 E-value=3.2e-08 Score=82.71 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=57.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--C--CC--CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--T--IP--NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~--~p--~~D~i~l~~ 230 (276)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+|+++.+|..+ + ++ .+|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 467999999999999999999999999999998 888877654 4579999999876 2 55 389998764
Q ss_pred c
Q 046375 231 V 231 (276)
Q Consensus 231 v 231 (276)
.
T Consensus 114 ~ 114 (218)
T 3dxy_A 114 P 114 (218)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.63 E-value=7.5e-08 Score=77.69 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=54.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--CC-CC-ccEEEEc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--TI-PN-ADALLLK 229 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~~-p~-~D~i~l~ 229 (276)
.....+|||||||+|.++..++++ ..+++++|+ |.+++.+++ .++++++..|+.. ++ ++ +|+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 456789999999999999999998 789999998 999988876 3789999977655 23 33 9999876
No 155
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.62 E-value=6.7e-08 Score=81.50 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=65.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCCC-ccEEEEcccccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIPN-ADALLLKWVLHN 234 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p~-~D~i~l~~vlh~ 234 (276)
..+.+|||||||.|-++..+. |..+++++|+ +.+++.+++ ..+.++..+|... +.|+ +|++++.-++|.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 568899999999999999988 9999999999 999988876 5678999999997 5665 999999999999
Q ss_pred CCcccc
Q 046375 235 WSDEAC 240 (276)
Q Consensus 235 ~~~~~~ 240 (276)
..+.+.
T Consensus 181 LE~q~~ 186 (253)
T 3frh_A 181 LEREQA 186 (253)
T ss_dssp HHHHST
T ss_pred hhhhch
Confidence 877665
No 156
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.61 E-value=2.4e-07 Score=80.19 Aligned_cols=94 Identities=20% Similarity=0.145 Sum_probs=73.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC-CC-CccEEEEcccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT-IP-NADALLLKWVL 232 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~-~p-~~D~i~l~~vl 232 (276)
....+|||+|||+|.++..+++..+. +++++|+ |.+++.+++ .++++++.+|+.+. .+ .+|+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 35789999999999999999999887 8999999 888887765 45799999999983 33 39999885331
Q ss_pred cCCCcccc--------------------------ccCHHHHHHhHhhCCCCceE
Q 046375 233 HNWSDEAC--------------------------ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 233 h~~~~~~~--------------------------~rt~~e~~~ll~~aGf~~~~ 260 (276)
+ .... +...+++.+.++++||+...
T Consensus 203 ~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 R---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp S---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred h---HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 1 1111 13578899999999998766
No 157
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.60 E-value=6.9e-08 Score=85.78 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=59.8
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-----------------CCCeEEEE
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDL-PHVITTAPV-----------------YDGVTHVS 213 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~-----------------~~ri~~~~ 213 (276)
.++..++ .....+|||||||+|.++..+++. .|+.+++++|. |.+++.+++ .++++++.
T Consensus 96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 3455555 667789999999999999999998 58899999998 888877654 16899999
Q ss_pred ccCCC---CCC--CccEEEEcc
Q 046375 214 GDMFH---TIP--NADALLLKW 230 (276)
Q Consensus 214 ~d~~~---~~p--~~D~i~l~~ 230 (276)
+|+.+ +++ .+|+|++..
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~ 195 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM 195 (336)
T ss_dssp SCTTCCC-------EEEEEECS
T ss_pred CChHHcccccCCCCeeEEEECC
Confidence 99987 344 399999743
No 158
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.60 E-value=3.6e-08 Score=88.26 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=60.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEcccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKWVL 232 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~vl 232 (276)
.+..+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ ++| .+|+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45689999999999999999998 6679999999667777654 4679999999998 676 39999987765
Q ss_pred cCCC
Q 046375 233 HNWS 236 (276)
Q Consensus 233 h~~~ 236 (276)
|...
T Consensus 144 ~~l~ 147 (349)
T 3q7e_A 144 YCLF 147 (349)
T ss_dssp BTBT
T ss_pred cccc
Confidence 5543
No 159
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.59 E-value=1.2e-07 Score=85.72 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=84.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKWV 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~v 231 (276)
....+|||+|||+|.+++.++...+..+++++|+ |.+++.+++ .++|+++.+|+.+ +.+ .+|+|+++--
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 4678999999999999999999988778999999 999988876 2589999999998 554 4999998644
Q ss_pred ccCCC-cccc-----------------------ccCHHHHHHhHhhCCCCceEEEec--CCc-cEEEEEec
Q 046375 232 LHNWS-DEAC-----------------------ERTELEWKNIPEKGGSPRYRIIKI--PAL-QCIIESYP 275 (276)
Q Consensus 232 lh~~~-~~~~-----------------------~rt~~e~~~ll~~aGf~~~~~~~~--~~~-~~vi~a~~ 275 (276)
.+... +... ..+...+.+.+.+.||+..+..+. ++. +.++...+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~~~~~~~~~~~~~G~~~~~~~~~~nG~l~~~~~~~~~ 366 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKL 366 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHEEEEEEEEESCHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHHcCCEEEEEEEEEcCCEEEEEEeccC
Confidence 33221 1110 246888999999999998887665 332 44544443
No 160
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=6.2e-08 Score=82.43 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCC---CccEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIP---NADAL 226 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p---~~D~i 226 (276)
..+..+|||||||+|..+..+++.+| +.+++++|+ |.+++.+++ .++|+++.+|+.+ .++ .||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34578999999999999999999998 889999999 888887765 3689999999866 222 49999
Q ss_pred EEcc
Q 046375 227 LLKW 230 (276)
Q Consensus 227 ~l~~ 230 (276)
++..
T Consensus 141 ~~d~ 144 (248)
T 3tfw_A 141 FIDA 144 (248)
T ss_dssp EECS
T ss_pred EECC
Confidence 8754
No 161
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.57 E-value=1.1e-07 Score=84.90 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=61.5
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCC--C
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIP--N 222 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p--~ 222 (276)
.+...+. ..+..+|||||||+|.++..++++ +..+++++|...+++.+++ .++|+++.+|+.+ ++| .
T Consensus 55 ~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 55 FIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 3444444 456789999999999999999987 5568999999558777665 3799999999988 666 3
Q ss_pred ccEEEEcccccC
Q 046375 223 ADALLLKWVLHN 234 (276)
Q Consensus 223 ~D~i~l~~vlh~ 234 (276)
+|+|++..+.+.
T Consensus 132 ~D~Ivs~~~~~~ 143 (340)
T 2fyt_A 132 VDVIISEWMGYF 143 (340)
T ss_dssp EEEEEECCCBTT
T ss_pred EEEEEEcCchhh
Confidence 999998774333
No 162
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.55 E-value=1.6e-07 Score=82.80 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=73.7
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC---
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP--- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p--- 221 (276)
.++..++ .....+|||||||+|.++..+++..+ +.+++++|+ |.+++.+++ .++++++.+|+.+..+
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3445555 56678999999999999999999988 488999998 888887765 3569999999987322
Q ss_pred CccEEEEcccccCCCccccccCHHHHHHhHhhCCC
Q 046375 222 NADALLLKWVLHNWSDEACERTELEWKNIPEKGGS 256 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf 256 (276)
.+|+|++..++|+.+ +++.++|..-|.
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~ 170 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGR 170 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEE
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcE
Confidence 499999999999876 345556655553
No 163
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.55 E-value=8.3e-08 Score=85.14 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=57.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCC--CccEEEEccccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIP--NADALLLKWVLH 233 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh 233 (276)
+..+|||||||+|.++..++++ +..+++++|...+++.+++ .++|+++.+|+.+ ++| .+|+|++..+.|
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 5689999999999999999886 5568999999667776654 4689999999988 566 399999886655
Q ss_pred CC
Q 046375 234 NW 235 (276)
Q Consensus 234 ~~ 235 (276)
..
T Consensus 117 ~l 118 (328)
T 1g6q_1 117 FL 118 (328)
T ss_dssp TB
T ss_pred hc
Confidence 44
No 164
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.54 E-value=1.3e-07 Score=82.91 Aligned_cols=92 Identities=8% Similarity=0.103 Sum_probs=64.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CC-------CeEEEEccCCC---------CC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YD-------GVTHVSGDMFH---------TI 220 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~-------ri~~~~~d~~~---------~~ 220 (276)
+...+|||||||+|..+..+++. ...+++++|+ +.+++.|++ .. ++++...|+.. ++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 34689999999999877776664 3468999999 999998876 11 26788888721 24
Q ss_pred C--CccEEEEcccccC-CCccccccCHHHHHHhHhhCC
Q 046375 221 P--NADALLLKWVLHN-WSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 221 p--~~D~i~l~~vlh~-~~~~~~~rt~~e~~~ll~~aG 255 (276)
| .||+|++..++|+ +++++......++.++|..-|
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG 163 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGG 163 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEE
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCC
Confidence 4 4999999999997 444444344455555555544
No 165
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.54 E-value=9.2e-08 Score=86.47 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=71.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEEcccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLLKWVL 232 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l~~vl 232 (276)
..+..+|||||||+|.++..++++. ..+++++|...+++.+++ .++|+++.+|+.+ ++|+ +|+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999983 348999998777776654 4779999999988 5664 9999997766
Q ss_pred cCCCcccc-ccCHHHHHHhHhhCC
Q 046375 233 HNWSDEAC-ERTELEWKNIPEKGG 255 (276)
Q Consensus 233 h~~~~~~~-~rt~~e~~~ll~~aG 255 (276)
|....+.. +.-..++.++|..-|
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG 163 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTG 163 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCe
Confidence 66654433 334555566676666
No 166
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.52 E-value=1.3e-08 Score=97.04 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=63.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C--CCeEEEEccCCC---CCC--CccEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----Y--DGVTHVSGDMFH---TIP--NADALLLKW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~--~ri~~~~~d~~~---~~p--~~D~i~l~~ 230 (276)
.++.+|||||||.|.++..++++ +.+++++|+ +.+++.|+. . -.|++..++..+ +.+ .||+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 46789999999999999999997 678999999 888887764 2 369999998865 343 399999999
Q ss_pred cccCCCcccc
Q 046375 231 VLHNWSDEAC 240 (276)
Q Consensus 231 vlh~~~~~~~ 240 (276)
|||+.++.+.
T Consensus 143 ~~ehv~~~~~ 152 (569)
T 4azs_A 143 VFHHIVHLHG 152 (569)
T ss_dssp CHHHHHHHHC
T ss_pred chhcCCCHHH
Confidence 9999987764
No 167
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.52 E-value=1.1e-07 Score=80.79 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=72.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhCCC---CC-------C---------------------
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKS--YPHIKGINFDL-PHVITTAPV---YD-------G--------------------- 208 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~--~p~l~~~~~Dl-p~~~~~a~~---~~-------r--------------------- 208 (276)
....+|||+|||+|.++..+++. +|..+++++|+ |.+++.+++ .. +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35689999999999999999998 78889999999 888888764 22 2
Q ss_pred ----eE-------------EEEccCCCCC------C--CccEEEEcccccCCCccc-------cccCHHHHHHhHhhCCC
Q 046375 209 ----VT-------------HVSGDMFHTI------P--NADALLLKWVLHNWSDEA-------CERTELEWKNIPEKGGS 256 (276)
Q Consensus 209 ----i~-------------~~~~d~~~~~------p--~~D~i~l~~vlh~~~~~~-------~~rt~~e~~~ll~~aGf 256 (276)
|+ ++.+|++++. + .+|+|+++..++...+.. ...-..++.++|..-|.
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 77 9999999854 3 499999987766554321 12345566667777674
Q ss_pred Cce
Q 046375 257 PRY 259 (276)
Q Consensus 257 ~~~ 259 (276)
=+.
T Consensus 210 l~~ 212 (250)
T 1o9g_A 210 IAV 212 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 168
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.51 E-value=4.5e-07 Score=74.41 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=76.0
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CC-CeEEEEccCCCCCC-CccEEEEcccccC
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YD-GVTHVSGDMFHTIP-NADALLLKWVLHN 234 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~-ri~~~~~d~~~~~p-~~D~i~l~~vlh~ 234 (276)
.....+|||+|||+|.++..+++..+ .+++++|. |.+++.+++ .+ +++++.+|+.+ +| .+|+|++.-.+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcc
Confidence 34568999999999999999998743 47999999 888887765 12 79999999987 44 5999999888887
Q ss_pred CCcccc---------------------ccCHHHHHHhHhhCCCCceEEE
Q 046375 235 WSDEAC---------------------ERTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 235 ~~~~~~---------------------~rt~~e~~~ll~~aGf~~~~~~ 262 (276)
+..... ..+.+...+++++.||+...+.
T Consensus 125 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp SSTTTTHHHHHHHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccCCchHHHHHHHHHhcCcEEEEEeCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 764221 1235666788999999876553
No 169
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.51 E-value=2.1e-07 Score=81.08 Aligned_cols=110 Identities=9% Similarity=-0.008 Sum_probs=77.3
Q ss_pred HHHHhccccCCC-CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhh-CCCCCCeEEEE-ccCCC----CCC--
Q 046375 152 REILAGYKHGFD-SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITT-APVYDGVTHVS-GDMFH----TIP-- 221 (276)
Q Consensus 152 ~~~~~~~~~~~~-~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~-a~~~~ri~~~~-~d~~~----~~p-- 221 (276)
..++..+. .. ...++||||||+|.++..+++. +..+++++|. +.+++. ++...|+.... .|+.. .+|
T Consensus 74 ~~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 74 EKALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 34455555 33 4579999999999999999886 5568999999 888876 34456665543 35432 244
Q ss_pred CccEEEEcccccCCCcccc---------------------------------------ccCHHHHHHhHhhCCCCceEEE
Q 046375 222 NADALLLKWVLHNWSDEAC---------------------------------------ERTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 222 ~~D~i~l~~vlh~~~~~~~---------------------------------------~rt~~e~~~ll~~aGf~~~~~~ 262 (276)
.+|++++..++|....--. .++.+++.++++++||++..+.
T Consensus 151 ~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 151 LPSFASIDVSFISLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp CCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3899998888775522111 0257889999999999988775
Q ss_pred ec
Q 046375 263 KI 264 (276)
Q Consensus 263 ~~ 264 (276)
..
T Consensus 231 ~s 232 (291)
T 3hp7_A 231 FS 232 (291)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 170
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.51 E-value=1.7e-07 Score=81.49 Aligned_cols=75 Identities=15% Similarity=0.314 Sum_probs=61.4
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p 221 (276)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ ++|
T Consensus 17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 345566665 5677899999999999999999985 47999998 888877654 1589999999998 677
Q ss_pred CccEEEEc
Q 046375 222 NADALLLK 229 (276)
Q Consensus 222 ~~D~i~l~ 229 (276)
.+|+|+++
T Consensus 93 ~fD~vv~n 100 (285)
T 1zq9_A 93 FFDTCVAN 100 (285)
T ss_dssp CCSEEEEE
T ss_pred hhcEEEEe
Confidence 89998884
No 171
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.51 E-value=6.5e-08 Score=81.41 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCC----C-CccEEEEc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTI----P-NADALLLK 229 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~----p-~~D~i~l~ 229 (276)
.+..+|||||||+|..+..+++.+|+.+++++|+ |.+++.+++ .++|+++.+|+.+.+ + .||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4578999999999999999999999999999999 888887765 358999999998732 2 49999875
Q ss_pred c
Q 046375 230 W 230 (276)
Q Consensus 230 ~ 230 (276)
.
T Consensus 150 ~ 150 (232)
T 3ntv_A 150 A 150 (232)
T ss_dssp T
T ss_pred C
Confidence 4
No 172
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.51 E-value=5e-07 Score=80.84 Aligned_cols=121 Identities=14% Similarity=0.020 Sum_probs=85.9
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC----C--CCeEEEEccCCC-CC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV----Y--DGVTHVSGDMFH-TI- 220 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~----~--~ri~~~~~d~~~-~~- 220 (276)
+..++.... +....+|||+|||+|.+++.++... |+.+++++|. |.+++.+++ . ++|+++.+|+.+ +.
T Consensus 192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 344555555 6778899999999999999999998 9999999999 999988775 2 389999999988 43
Q ss_pred -CCccEEEEcccccCCCc--ccc------------------------ccCHHHHHHhHhhCCCCceEEEec--CC-ccEE
Q 046375 221 -PNADALLLKWVLHNWSD--EAC------------------------ERTELEWKNIPEKGGSPRYRIIKI--PA-LQCI 270 (276)
Q Consensus 221 -p~~D~i~l~~vlh~~~~--~~~------------------------~rt~~e~~~ll~~aGf~~~~~~~~--~~-~~~v 270 (276)
+.+|+|+++--.+.... .+. ......++.+++ .||+..+.... ++ ...+
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~~~-~g~~~~~~~~l~~g~l~~~i 348 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRALP-PGFALRHARVVEQGGVYPRV 348 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHHCC-TTEEEEEEEECCBTTBCCEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHhh-cCcEEEEEEEEEeCCEEEEE
Confidence 34899998543322111 110 135666777777 89988877666 33 2455
Q ss_pred EEEe
Q 046375 271 IESY 274 (276)
Q Consensus 271 i~a~ 274 (276)
+..+
T Consensus 349 ~vl~ 352 (354)
T 3tma_A 349 FVLE 352 (354)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 173
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.50 E-value=1.7e-07 Score=78.27 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=73.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCC------CCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCCCCC--
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYP------HIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFHTIP-- 221 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~~~p-- 221 (276)
.....+|||||||+|.++..+++..+ ..+++++|. |.+++.+++ .++++++.+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 44568999999999999999999765 368999998 888887765 2589999999988654
Q ss_pred -CccEEEEcccccCCCccccccCHHHHHHhHhhCCCCceEE
Q 046375 222 -NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRYRI 261 (276)
Q Consensus 222 -~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 261 (276)
.||+|++...+|... .++.++|..-|.-++.+
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEE
Confidence 399999999998764 56777887777444444
No 174
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.49 E-value=3.8e-07 Score=74.41 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=59.5
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCC--CCeEEEeechHHHhhCCCCCCeEEEEccCCC-C-----------
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP--HIKGINFDLPHVITTAPVYDGVTHVSGDMFH-T----------- 219 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p--~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~-~----------- 219 (276)
+.+.+. .+....+|||||||+|.++..+++++| +.+++++|+..+. ..++++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 444443 134568999999999999999999998 6899999995431 24579999999987 3
Q ss_pred --------------CC--CccEEEEcccccCC
Q 046375 220 --------------IP--NADALLLKWVLHNW 235 (276)
Q Consensus 220 --------------~p--~~D~i~l~~vlh~~ 235 (276)
++ .+|+|++...+|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~ 119 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCI 119 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCC
Confidence 34 49999998777653
No 175
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.47 E-value=2.9e-07 Score=80.39 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=62.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPN-- 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~-- 222 (276)
...+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 345566665 667789999999999999999998 568999998 888888766 4799999999998 6664
Q ss_pred ccEEEEc
Q 046375 223 ADALLLK 229 (276)
Q Consensus 223 ~D~i~l~ 229 (276)
+|+|+.+
T Consensus 115 fD~Iv~N 121 (295)
T 3gru_A 115 FNKVVAN 121 (295)
T ss_dssp CSEEEEE
T ss_pred ccEEEEe
Confidence 8998855
No 176
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.46 E-value=8.2e-08 Score=80.03 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=61.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCC------Ccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIP------NAD 224 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p------~~D 224 (276)
.+..+|||||||+|..+..+++..| +.+++++|+ |.+++.+++ .++|+++.+|+.+ .++ .+|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3578999999999999999999875 889999999 888888765 3589999999854 232 499
Q ss_pred EEEEcccccCCCc
Q 046375 225 ALLLKWVLHNWSD 237 (276)
Q Consensus 225 ~i~l~~vlh~~~~ 237 (276)
+|++....|.+.+
T Consensus 137 ~V~~d~~~~~~~~ 149 (221)
T 3u81_A 137 MVFLDHWKDRYLP 149 (221)
T ss_dssp EEEECSCGGGHHH
T ss_pred EEEEcCCcccchH
Confidence 9999887776653
No 177
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.46 E-value=2e-07 Score=82.05 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=59.5
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC---CCC--CccEEEEcccc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH---TIP--NADALLLKWVL 232 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~---~~p--~~D~i~l~~vl 232 (276)
..+|||||||.|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 44999999999999999999999999999999 999988875 4699999999876 344 49999986554
Q ss_pred cC
Q 046375 233 HN 234 (276)
Q Consensus 233 h~ 234 (276)
|.
T Consensus 170 ~~ 171 (317)
T 3gjy_A 170 GA 171 (317)
T ss_dssp TS
T ss_pred cc
Confidence 43
No 178
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.45 E-value=3.1e-07 Score=78.04 Aligned_cols=77 Identities=12% Similarity=0.269 Sum_probs=59.6
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCC-c
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPN-A 223 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~-~ 223 (276)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 455666666 5677899999999999999999996 68999998 888877665 3689999999988 6662 3
Q ss_pred cEEEEccc
Q 046375 224 DALLLKWV 231 (276)
Q Consensus 224 D~i~l~~v 231 (276)
+..++++.
T Consensus 95 ~~~vv~nl 102 (244)
T 1qam_A 95 SYKIFGNI 102 (244)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 33444443
No 179
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.43 E-value=6.5e-07 Score=77.42 Aligned_cols=70 Identities=24% Similarity=0.252 Sum_probs=57.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC--C-CC-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH--T-IP-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~--~-~p-~~D~i~l 228 (276)
.+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .+|+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 578999999999999999998878889999999 888887654 3699999999876 2 23 4999998
Q ss_pred ccccc
Q 046375 229 KWVLH 233 (276)
Q Consensus 229 ~~vlh 233 (276)
.-..+
T Consensus 155 d~~~~ 159 (275)
T 1iy9_A 155 DSTEP 159 (275)
T ss_dssp SCSSC
T ss_pred CCCCC
Confidence 54433
No 180
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.42 E-value=1.4e-07 Score=75.48 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=57.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-CC-CccEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-IP-NADALLLKW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~p-~~D~i~l~~ 230 (276)
....+|||+|||+|.++..++++ +..+++++|+ +.+++.+++ .++++++.+|+.+ + .+ .+|+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35689999999999999999987 6679999999 888887765 2579999999977 2 33 499999876
Q ss_pred ccc
Q 046375 231 VLH 233 (276)
Q Consensus 231 vlh 233 (276)
.+|
T Consensus 109 ~~~ 111 (177)
T 2esr_A 109 PYA 111 (177)
T ss_dssp SSH
T ss_pred CCC
Confidence 543
No 181
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.42 E-value=9.3e-08 Score=81.65 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=56.4
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEEcccccCCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP--NADALLLKWVLHNWS 236 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~~~ 236 (276)
...+|||||||+|.++..++++ +.+++++|. |.+++.+++ ... .++.+|+.+ +++ .+|+|++..+++++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 5689999999999999999987 568999999 888888766 222 388899987 665 399999988665553
No 182
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.42 E-value=4.3e-07 Score=76.75 Aligned_cols=68 Identities=12% Similarity=0.327 Sum_probs=55.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC------------CCCCeEEEEccCCC--C--CC--Cc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP------------VYDGVTHVSGDMFH--T--IP--NA 223 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~------------~~~ri~~~~~d~~~--~--~p--~~ 223 (276)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ...+|+++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999998 88876543 14689999999986 3 54 38
Q ss_pred cEEEEcc
Q 046375 224 DALLLKW 230 (276)
Q Consensus 224 D~i~l~~ 230 (276)
|.|++..
T Consensus 125 D~v~~~~ 131 (235)
T 3ckk_A 125 TKMFFLF 131 (235)
T ss_dssp EEEEEES
T ss_pred eEEEEeC
Confidence 9987643
No 183
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.42 E-value=4.2e-07 Score=76.80 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=57.1
Q ss_pred CCceEEEeeCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCCC--C---C--CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKS----YPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFHT--I---P--NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~----~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~~--~---p--~~D~i~l~~ 230 (276)
+..+|||||||+|..+..+++. .|+.+++++|+ |.+++.++. .++|+++.+|..+. + + .+|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999998 78999999999 888887765 57899999999873 2 2 389998755
Q ss_pred c
Q 046375 231 V 231 (276)
Q Consensus 231 v 231 (276)
.
T Consensus 161 ~ 161 (236)
T 2bm8_A 161 A 161 (236)
T ss_dssp S
T ss_pred c
Confidence 4
No 184
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.42 E-value=7.7e-07 Score=74.12 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=74.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-----CCCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCCCC----
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-----PHIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFHTI---- 220 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~~~---- 220 (276)
.....+|||||||+|.++..+++.. |+.+++++|. |.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999987 6789999998 888877765 258999999998743
Q ss_pred C---CccEEEEcccccCCCccccccCHHHHHHhHhhCCCCceEEEe
Q 046375 221 P---NADALLLKWVLHNWSDEACERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 221 p---~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
+ .||+|++...+|... .++.++|..-|.-++.+.+
T Consensus 158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 2 499999999988653 5677788777755444443
No 185
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.41 E-value=3e-07 Score=80.59 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=62.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-C--C-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-T--I- 220 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~--~- 220 (276)
...+++.++ .....+|||+|||+|.++..+++++|+.+++++|. |.+++.+++ .+|++++.+|+.+ + +
T Consensus 15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 345556665 55678999999999999999999999899999999 999987765 3699999999876 2 1
Q ss_pred ----CCccEEEE
Q 046375 221 ----PNADALLL 228 (276)
Q Consensus 221 ----p~~D~i~l 228 (276)
..+|.|++
T Consensus 93 ~~g~~~~D~Vl~ 104 (301)
T 1m6y_A 93 TLGIEKVDGILM 104 (301)
T ss_dssp HTTCSCEEEEEE
T ss_pred hcCCCCCCEEEE
Confidence 35899886
No 186
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.41 E-value=8e-07 Score=76.42 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=61.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC---------CCCeEEEEccCCC-C
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDL-PHVITTAPV---------YDGVTHVSGDMFH-T 219 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~~-~ 219 (276)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|. |.+++.+++ .++++++.+|+.+ +
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34556666 667789999999999999999996 58899999998 888877654 2589999999987 4
Q ss_pred CC--CccEEEE
Q 046375 220 IP--NADALLL 228 (276)
Q Consensus 220 ~p--~~D~i~l 228 (276)
++ .+|+|++
T Consensus 167 ~~~~~~D~v~~ 177 (280)
T 1i9g_A 167 LPDGSVDRAVL 177 (280)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCceeEEEE
Confidence 54 3999988
No 187
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.41 E-value=3e-07 Score=78.70 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=60.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCeEEEEccCCC-CCC--CccEEEEccccc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-YDGVTHVSGDMFH-TIP--NADALLLKWVLH 233 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh 233 (276)
....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..++.+..+|+.+ +++ .+|+|++..+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~ 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh
Confidence 3568999999999999999999999999999998 888888776 6789999999987 555 399999876643
No 188
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.40 E-value=7.4e-07 Score=70.41 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCeEEEEccCCC-C--------CC--CccEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDLPHVITTAPVYDGVTHVSGDMFH-T--------IP--NADALLLKW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~-~--------~p--~~D~i~l~~ 230 (276)
....+|||||||+|.++..+++.+ |+.+++++|...+++ ..+++++.+|+.+ + ++ .+|+|++..
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~ 96 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence 456799999999999999999995 778999999944433 2689999999987 4 55 399999999
Q ss_pred cccCCCcc
Q 046375 231 VLHNWSDE 238 (276)
Q Consensus 231 vlh~~~~~ 238 (276)
.+|.....
T Consensus 97 ~~~~~~~~ 104 (180)
T 1ej0_A 97 APNMSGTP 104 (180)
T ss_dssp CCCCCSCH
T ss_pred CccccCCC
Confidence 88876553
No 189
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.40 E-value=3e-07 Score=74.53 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=72.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCC---CC--CccEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHT---IP--NADALLLKW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~---~p--~~D~i~l~~ 230 (276)
....+|||+|||+|.++..++++ +..+++++|+ |.+++.+++ .++++++.+|+.+. ++ .+|+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999988874 5668999999 899988776 36899999999872 32 499999987
Q ss_pred cccCCCccccccCHHHHHH--hHhhCCCCceEE
Q 046375 231 VLHNWSDEACERTELEWKN--IPEKGGSPRYRI 261 (276)
Q Consensus 231 vlh~~~~~~~~rt~~e~~~--ll~~aGf~~~~~ 261 (276)
.+|.. .++.+....++.+ +|..-|.-+++.
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 76543 2333445566666 777777555544
No 190
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.39 E-value=5.4e-07 Score=82.67 Aligned_cols=99 Identities=10% Similarity=0.220 Sum_probs=69.6
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhC-------CC--------CCCeEEEEcc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTA-------PV--------YDGVTHVSGD 215 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a-------~~--------~~ri~~~~~d 215 (276)
..+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+ ++ .++|+++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 34455555 66778999999999999999999988889999998 7776665 33 2689999885
Q ss_pred CC-CC--C----CCccEEEEcccccCCCccccccCHHHHHHhHhhCC
Q 046375 216 MF-HT--I----PNADALLLKWVLHNWSDEACERTELEWKNIPEKGG 255 (276)
Q Consensus 216 ~~-~~--~----p~~D~i~l~~vlh~~~~~~~~rt~~e~~~ll~~aG 255 (276)
.+ .+ + ..||+|+++++++. + +......++.++|...|
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~-~--d~~~~L~el~r~LKpGG 353 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD-E--DLNKKVEKILQTAKVGC 353 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC-H--HHHHHHHHHHTTCCTTC
T ss_pred ccccccccccccCCCCEEEEeCcccc-c--cHHHHHHHHHHhCCCCe
Confidence 54 32 2 24999999877742 1 22222345555555544
No 191
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.38 E-value=3e-07 Score=73.92 Aligned_cols=70 Identities=19% Similarity=0.061 Sum_probs=57.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC---C---C-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT---I---P-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~---~---p-~~D~i~ 227 (276)
....+|||+|||+|.++..+++ .+..+++++|+ |.+++.+++ .++++++.+|+.+. + + .+|+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4568999999999999999888 46679999999 888888765 25899999999772 1 3 499999
Q ss_pred Eccccc
Q 046375 228 LKWVLH 233 (276)
Q Consensus 228 l~~vlh 233 (276)
+...+|
T Consensus 122 ~~~~~~ 127 (187)
T 2fhp_A 122 LDPPYA 127 (187)
T ss_dssp ECCCGG
T ss_pred ECCCCC
Confidence 987755
No 192
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.38 E-value=3e-07 Score=80.51 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=59.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TIPN 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~p~ 222 (276)
...+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 106 (299)
T 2h1r_A 31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK 106 (299)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence 344555555 566789999999999999999987 458999999 888877764 3689999999988 5667
Q ss_pred ccEEEEcccccCCCc
Q 046375 223 ADALLLKWVLHNWSD 237 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~ 237 (276)
+|+|+++ ..++|+.
T Consensus 107 ~D~Vv~n-~py~~~~ 120 (299)
T 2h1r_A 107 FDVCTAN-IPYKISS 120 (299)
T ss_dssp CSEEEEE-CCGGGHH
T ss_pred CCEEEEc-CCccccc
Confidence 9998874 4444443
No 193
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.37 E-value=5.1e-07 Score=75.66 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=60.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C--C-CccEEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I--P-NADALLL 228 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~--p-~~D~i~l 228 (276)
.+..+|||||||+|..+..+++.+|+.+++++|. |.+++.+++ .++|+++.+|+.+ + . + .+|+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3567999999999999999999999999999999 888887765 3589999999987 2 2 3 4999998
Q ss_pred cccccC
Q 046375 229 KWVLHN 234 (276)
Q Consensus 229 ~~vlh~ 234 (276)
....++
T Consensus 133 ~~~~~~ 138 (233)
T 2gpy_A 133 DAAKGQ 138 (233)
T ss_dssp EGGGSC
T ss_pred CCCHHH
Confidence 877653
No 194
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.34 E-value=5.7e-07 Score=77.63 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=59.1
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCeEEEEccCCC-CCC---Cc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---YDGVTHVSGDMFH-TIP---NA 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---~~ri~~~~~d~~~-~~p---~~ 223 (276)
..+++.++ .... +|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+++ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 34555555 5556 99999999999999999985 67999998 888887765 4689999999988 554 35
Q ss_pred cEEEEcccccCC
Q 046375 224 DALLLKWVLHNW 235 (276)
Q Consensus 224 D~i~l~~vlh~~ 235 (276)
|.|+ +|.-++.
T Consensus 112 ~~iv-~NlPy~i 122 (271)
T 3fut_A 112 SLLV-ANLPYHI 122 (271)
T ss_dssp EEEE-EEECSSC
T ss_pred cEEE-ecCcccc
Confidence 6544 4444444
No 195
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.34 E-value=4.3e-07 Score=75.97 Aligned_cols=67 Identities=7% Similarity=-0.010 Sum_probs=55.8
Q ss_pred ceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------C-CCeEEEEccCCC---CC-C-CccEEEEcc
Q 046375 166 KSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------Y-DGVTHVSGDMFH---TI-P-NADALLLKW 230 (276)
Q Consensus 166 ~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~d~~~---~~-p-~~D~i~l~~ 230 (276)
.+|||||||+|..+..+++..| +.+++++|. |.+++.+++ . +||+++.+|..+ .+ + .||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999985 889999998 888887765 3 689999999876 24 3 499998765
Q ss_pred cc
Q 046375 231 VL 232 (276)
Q Consensus 231 vl 232 (276)
..
T Consensus 138 ~~ 139 (221)
T 3dr5_A 138 SP 139 (221)
T ss_dssp CT
T ss_pred cH
Confidence 43
No 196
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.33 E-value=1.2e-06 Score=78.92 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=53.4
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEEccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLLKWV 231 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l~~v 231 (276)
+.++|||||||+|.++..+++... .+++++|...++..+++ .++|+++.+|+.+ ++|+ +|+|+.-.+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~ 158 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWM 158 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecc
Confidence 468999999999999987777643 47999998667766654 6899999999988 6775 999986433
No 197
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.33 E-value=1.8e-07 Score=77.86 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=57.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCC---C-----CCccE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHT---I-----PNADA 225 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~---~-----p~~D~ 225 (276)
.+..+|||||||+|..+..+++.+| +.+++++|+ |.+++.+++ .++|+++.+|+.+. + ..+|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999998 789999998 888887764 46899999999762 2 24999
Q ss_pred EEEccc
Q 046375 226 LLLKWV 231 (276)
Q Consensus 226 i~l~~v 231 (276)
|++...
T Consensus 137 v~~d~~ 142 (223)
T 3duw_A 137 IFIDAD 142 (223)
T ss_dssp EEECSC
T ss_pred EEEcCC
Confidence 987654
No 198
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.33 E-value=6.9e-07 Score=74.36 Aligned_cols=90 Identities=18% Similarity=0.076 Sum_probs=70.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCCCCC---CccE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFHTIP---NADA 225 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~~~p---~~D~ 225 (276)
.....+|||||||+|.++..+++.. |+.+++++|. |.+++.+++ .++++++.+|+.+..+ .||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3466899999999999999999985 7789999998 888877754 2489999999986322 4999
Q ss_pred EEEcccccCCCccccccCHHHHHHhHhhCCCCce
Q 046375 226 LLLKWVLHNWSDEACERTELEWKNIPEKGGSPRY 259 (276)
Q Consensus 226 i~l~~vlh~~~~~~~~rt~~e~~~ll~~aGf~~~ 259 (276)
|++...++... .++.++|..-|.-+.
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLIL 180 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEE
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEE
Confidence 99998887664 456666766664333
No 199
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.33 E-value=1.6e-07 Score=74.28 Aligned_cols=68 Identities=10% Similarity=-0.042 Sum_probs=57.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCC---C---C-CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHT---I---P-NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~---~---p-~~D~i~l~~ 230 (276)
...+|||+|||+|.++..++++.++ ++++|. |.+++.+++ .-+++++.+|+.+. . + .+|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5689999999999999999999776 999999 888888775 12899999998762 1 1 499999988
Q ss_pred ccc
Q 046375 231 VLH 233 (276)
Q Consensus 231 vlh 233 (276)
.+|
T Consensus 119 ~~~ 121 (171)
T 1ws6_A 119 PYA 121 (171)
T ss_dssp CTT
T ss_pred CCc
Confidence 776
No 200
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.32 E-value=6.6e-07 Score=78.89 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=58.3
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C-CC-Cc
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T-IP-NA 223 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~-~p-~~ 223 (276)
+..++ .....+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+++++.+|+.+ + .+ .|
T Consensus 111 ~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~f 188 (315)
T 1ixk_A 111 PVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF 188 (315)
T ss_dssp HHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccC
Confidence 34444 56678999999999999999999975 478999998 888877765 3579999999987 3 34 49
Q ss_pred cEEEE
Q 046375 224 DALLL 228 (276)
Q Consensus 224 D~i~l 228 (276)
|+|++
T Consensus 189 D~Il~ 193 (315)
T 1ixk_A 189 DKILL 193 (315)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99997
No 201
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.32 E-value=5.2e-07 Score=76.44 Aligned_cols=66 Identities=12% Similarity=0.380 Sum_probs=53.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------------CCCeEEEEccCCC--C--CC--
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--------------YDGVTHVSGDMFH--T--IP-- 221 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------------~~ri~~~~~d~~~--~--~p-- 221 (276)
....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++.+|+++ + ++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4568999999999999999999999999999998 777765532 2579999999987 2 33
Q ss_pred CccEEEE
Q 046375 222 NADALLL 228 (276)
Q Consensus 222 ~~D~i~l 228 (276)
.+|.|++
T Consensus 128 ~~d~v~~ 134 (246)
T 2vdv_E 128 QLSKMFF 134 (246)
T ss_dssp CEEEEEE
T ss_pred ccCEEEE
Confidence 2677663
No 202
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.31 E-value=4.9e-07 Score=79.00 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCCC--C-C-CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFHT--I-P-NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~~--~-p-~~D~i 226 (276)
+++.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. . + .||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999878889999999 888887754 35999999999873 2 2 39999
Q ss_pred EEccc
Q 046375 227 LLKWV 231 (276)
Q Consensus 227 ~l~~v 231 (276)
++...
T Consensus 162 i~D~~ 166 (294)
T 3adn_A 162 ISDCT 166 (294)
T ss_dssp EECC-
T ss_pred EECCC
Confidence 98444
No 203
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.31 E-value=7.3e-07 Score=80.72 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=58.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCC-CCC--CccEEEEcccccC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFH-TIP--NADALLLKWVLHN 234 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~-~~p--~~D~i~l~~vlh~ 234 (276)
...+|||+|||+|.++..++++ +.+++++|. +.+++.+++ .-+++++.+|+.+ +.+ .||+|+++..+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999998 569999998 888888765 2359999999998 344 4999999999887
No 204
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.31 E-value=1.1e-06 Score=74.80 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=63.5
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCC-CCCC-c-c
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFH-TIPN-A-D 224 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~-~~p~-~-D 224 (276)
...+++.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. . +
T Consensus 20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 345566665 566789999999999999999997 5678999999 888887765 4689999999988 5553 2 4
Q ss_pred EEEEcccccCC
Q 046375 225 ALLLKWVLHNW 235 (276)
Q Consensus 225 ~i~l~~vlh~~ 235 (276)
.++++|.-++.
T Consensus 97 ~~vv~NlPy~i 107 (249)
T 3ftd_A 97 LKVVGNLPYNV 107 (249)
T ss_dssp EEEEEECCTTT
T ss_pred cEEEEECchhc
Confidence 56666665554
No 205
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.30 E-value=3.6e-07 Score=75.96 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=56.4
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C------CCccE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I------PNADA 225 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~------p~~D~ 225 (276)
+..+|||||||+|..+..+++.+| +.+++++|. |.+++.+++ .++|+++.+|..+ + + ..+|+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 567999999999999999999998 889999999 888887765 4679999999865 2 2 34999
Q ss_pred EEEcc
Q 046375 226 LLLKW 230 (276)
Q Consensus 226 i~l~~ 230 (276)
|++..
T Consensus 144 v~~~~ 148 (225)
T 3tr6_A 144 IYIDA 148 (225)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 98654
No 206
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.29 E-value=3e-06 Score=71.28 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=59.5
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCC-C--
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTI-P-- 221 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~-p-- 221 (276)
.++..++ .....+|||+|||+|.++..+++. ..+++++|. |.+++.+++ .+++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 4445555 567789999999999999999998 779999998 888877765 268999999999865 4
Q ss_pred CccEEEE
Q 046375 222 NADALLL 228 (276)
Q Consensus 222 ~~D~i~l 228 (276)
.+|+|++
T Consensus 158 ~~D~v~~ 164 (248)
T 2yvl_A 158 IFHAAFV 164 (248)
T ss_dssp CBSEEEE
T ss_pred cccEEEE
Confidence 3999987
No 207
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.27 E-value=3.5e-07 Score=77.56 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=57.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C------CCccE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I------PNADA 225 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~------p~~D~ 225 (276)
++.+|||||||+|..+..+++..| +.+++++|+ |.+++.+++ .++|+++.+|..+ + + ..||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 568999999999999999999986 889999998 888877765 4699999999976 2 2 34999
Q ss_pred EEEccc
Q 046375 226 LLLKWV 231 (276)
Q Consensus 226 i~l~~v 231 (276)
|++...
T Consensus 140 V~~d~~ 145 (242)
T 3r3h_A 140 IFIDAD 145 (242)
T ss_dssp EEEESC
T ss_pred EEEcCC
Confidence 987654
No 208
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.26 E-value=2.6e-06 Score=71.77 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=37.8
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV 205 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~ 205 (276)
.++..+.. .....+|||||||+|.++..++++ ...+++++|+ |.+++.+++
T Consensus 27 ~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~ 78 (232)
T 3opn_A 27 KALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIR 78 (232)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHH
T ss_pred HHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHH
Confidence 34455541 234579999999999999999988 3348999998 888776443
No 209
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.25 E-value=6.1e-07 Score=73.95 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=55.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--CC-CCccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--TI-PNADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~~-p~~D~i~l~ 229 (276)
+..+|||||||+|..+..+++..| +.+++++|. |.+++.+++ .++++++.+|..+ +. +++|+|++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence 467999999999999999999988 889999999 888887765 3589999999876 32 239999876
No 210
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.25 E-value=5.9e-07 Score=73.81 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------C--CCeEEEEccCCC--C-C--CC-ccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------Y--DGVTHVSGDMFH--T-I--PN-ADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~--~ri~~~~~d~~~--~-~--p~-~D~i~l 228 (276)
...+|||+|||+|.++..++.+.+ .+++++|+ |.+++.+++ . ++++++.+|+.+ + + .. +|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 357999999999999999887754 58999999 899988765 2 689999999876 2 2 25 999998
Q ss_pred ccccc
Q 046375 229 KWVLH 233 (276)
Q Consensus 229 ~~vlh 233 (276)
...+|
T Consensus 132 ~~~~~ 136 (201)
T 2ift_A 132 DPPFH 136 (201)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 77755
No 211
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.25 E-value=5e-07 Score=78.34 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=55.4
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhCCC--CCCeEEEEccCCC-CCC
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH--IKGINFDL-PHVITTAPV--YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~-~~p 221 (276)
..+++.++ .....+|||||||+|.++..|+++.+. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34555555 566789999999999999999998764 55999999 888888766 4789999999988 554
No 212
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.24 E-value=8e-07 Score=73.07 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=56.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC--CCC--CccEEEEcccc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH--TIP--NADALLLKWVL 232 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~--~~p--~~D~i~l~~vl 232 (276)
...+|||+|||+|.++..++++.. .+++++|. |.+++.+++ .++++++.+|+.+ +.+ .+|+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999999888754 38999999 899988765 2589999999876 433 49999987665
Q ss_pred c
Q 046375 233 H 233 (276)
Q Consensus 233 h 233 (276)
|
T Consensus 133 ~ 133 (202)
T 2fpo_A 133 R 133 (202)
T ss_dssp S
T ss_pred C
Confidence 5
No 213
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.24 E-value=1.2e-06 Score=75.46 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCC-CC-CccEEEEccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHT-IP-NADALLLKWV 231 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~-~p-~~D~i~l~~v 231 (276)
+.+..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++ .++++++.+|+.+. .+ .+|+|++...
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence 45678999999999999999999999889999999 888887765 35789999999873 33 4999988654
No 214
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.23 E-value=3.5e-07 Score=77.10 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=57.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C----------
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I---------- 220 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~---------- 220 (276)
.+..+|||||||+|..+..+++.+| ..+++++|. |.+++.+++ .++++++.+|+.+ + +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 3568999999999999999999998 789999998 888877765 2569999999865 2 2
Q ss_pred -------CCccEEEEccccc
Q 046375 221 -------PNADALLLKWVLH 233 (276)
Q Consensus 221 -------p~~D~i~l~~vlh 233 (276)
..+|+|++....+
T Consensus 139 ~~f~~~~~~fD~I~~~~~~~ 158 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADKE 158 (239)
T ss_dssp TTTCCSTTCEEEEEECSCGG
T ss_pred ccccCCCCCcCEEEEeCCHH
Confidence 3499999875443
No 215
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.22 E-value=1.1e-06 Score=70.37 Aligned_cols=79 Identities=9% Similarity=-0.076 Sum_probs=63.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCC-CC---C--CccEEEEcccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFH-TI---P--NADALLLKWVL 232 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~-~~---p--~~D~i~l~~vl 232 (276)
.....+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ ++ + .||+|++++++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999995 23887 888888876 4469999999987 44 4 39999999999
Q ss_pred cCC-Ccccc------------------------------ccCHHHHHHhHhhCCC
Q 046375 233 HNW-SDEAC------------------------------ERTELEWKNIPEKGGS 256 (276)
Q Consensus 233 h~~-~~~~~------------------------------~rt~~e~~~ll~~aGf 256 (276)
|++ ++... .++.++|.++|+++||
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 998 55443 1358999999999999
No 216
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.21 E-value=1e-06 Score=75.37 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TI 220 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~ 220 (276)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence 344566665 6677899999999999999999985 68999999 888887765 4799999999988 44
No 217
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.20 E-value=2.4e-06 Score=73.97 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=70.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec--hHHHhhCCC-C---------------CCeEEEEccCCCC---C
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL--PHVITTAPV-Y---------------DGVTHVSGDMFHT---I 220 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl--p~~~~~a~~-~---------------~ri~~~~~d~~~~---~ 220 (276)
.....+|||||||+|.++..+++.. ..+++++|+ |.+++.+++ . ++|+++..|..+. +
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888863 348999999 677765543 1 4788887665441 2
Q ss_pred -----C-CccEEEEcccccCCCcccc-------------------------c-c-----CHHHHHHhHhhCC-CCceEEE
Q 046375 221 -----P-NADALLLKWVLHNWSDEAC-------------------------E-R-----TELEWKNIPEKGG-SPRYRII 262 (276)
Q Consensus 221 -----p-~~D~i~l~~vlh~~~~~~~-------------------------~-r-----t~~e~~~ll~~aG-f~~~~~~ 262 (276)
+ .||+|+++.++|+.++... . + ...++.+.+++.| |++.++.
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence 2 4999999999887532111 0 0 1345667788889 8887774
Q ss_pred e
Q 046375 263 K 263 (276)
Q Consensus 263 ~ 263 (276)
.
T Consensus 236 ~ 236 (281)
T 3bzb_A 236 S 236 (281)
T ss_dssp C
T ss_pred c
Confidence 3
No 218
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.20 E-value=4.7e-06 Score=76.64 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=73.8
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCC-----C
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHT-----I 220 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~-----~ 220 (276)
.+++.++ .....+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .++++|+.+|+.+. +
T Consensus 277 ~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 456789999999999999999987 678999998 888887765 35899999999873 2
Q ss_pred C--CccEEEEcccccCCCcccc-----------------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 221 P--NADALLLKWVLHNWSDEAC-----------------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 221 p--~~D~i~l~~vlh~~~~~~~-----------------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
+ .+|+|++.-=- .-.++.. ..|...-...|.+.||+..++.+.
T Consensus 353 ~~~~fD~Vv~dPPr-~g~~~~~~~l~~~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~~~~~ 414 (433)
T 1uwv_A 353 AKNGFDKVLLDPAR-AGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAML 414 (433)
T ss_dssp GTTCCSEEEECCCT-TCCHHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred hcCCCCEEEECCCC-ccHHHHHHHHHhcCCCeEEEEECChHHHHhhHHHHHHCCcEEEEEEEe
Confidence 2 38999862100 0000000 123344456677789999887655
No 219
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.19 E-value=3.9e-06 Score=72.69 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------------CCCeEEEEccCCCCC--C-C
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------------YDGVTHVSGDMFHTI--P-N 222 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------------~~ri~~~~~d~~~~~--p-~ 222 (276)
+.+.+|||||||+|.++..+++. |..+++++|+ |.+++.+++ .+|++++.+|..+-+ + .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999999 888876542 368999999986521 4 4
Q ss_pred ccEEEEcccc
Q 046375 223 ADALLLKWVL 232 (276)
Q Consensus 223 ~D~i~l~~vl 232 (276)
+|+|++....
T Consensus 153 fD~Ii~d~~~ 162 (281)
T 1mjf_A 153 FDVIIADSTD 162 (281)
T ss_dssp EEEEEEECCC
T ss_pred eeEEEECCCC
Confidence 9999986543
No 220
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.19 E-value=2.8e-06 Score=73.44 Aligned_cols=90 Identities=12% Similarity=-0.042 Sum_probs=64.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC--CC------CeEEE--EccCCC-CCCCccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV--YD------GVTHV--SGDMFH-TIPNADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~--~~------ri~~~--~~d~~~-~~p~~D~i~l~~ 230 (276)
+....+|||||||+|.++..++++ .+++++|+..++..+++ .. +|+++ .+|+.+ |-..+|+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999987 58999999446444432 11 78999 999987 312499999876
Q ss_pred cccCCCcccc--c---cCHHHHHHhHhhCC
Q 046375 231 VLHNWSDEAC--E---RTELEWKNIPEKGG 255 (276)
Q Consensus 231 vlh~~~~~~~--~---rt~~e~~~ll~~aG 255 (276)
. |..+.... . +...+...+|..-|
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG 185 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQ 185 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCC
Confidence 6 44332211 1 24566778888888
No 221
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.17 E-value=3.5e-06 Score=76.72 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=57.7
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCCCCeEEEEccCCCCCC--CccEEEE
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPVYDGVTHVSGDMFHTIP--NADALLL 228 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~~~p--~~D~i~l 228 (276)
.+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ |.+++.+ .+++++.+|+++..+ .+|+|++
T Consensus 30 ~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 3344444 3345699999999999999999987 7789999999 7777766 689999999988433 5999998
Q ss_pred c
Q 046375 229 K 229 (276)
Q Consensus 229 ~ 229 (276)
+
T Consensus 105 N 105 (421)
T 2ih2_A 105 N 105 (421)
T ss_dssp C
T ss_pred C
Confidence 4
No 222
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.17 E-value=4e-06 Score=68.39 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=54.9
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCCC-----------
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHTI----------- 220 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~~----------- 220 (276)
..+.+.+. .+....+|||+|||+|.++..++++ ..+++++|+..+ ....+++++.+|+.++.
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 34555554 2456789999999999999999998 778999999432 22467999999998731
Q ss_pred ---CCccEEEEcc
Q 046375 221 ---PNADALLLKW 230 (276)
Q Consensus 221 ---p~~D~i~l~~ 230 (276)
..+|+|++..
T Consensus 87 ~~~~~~D~Vlsd~ 99 (191)
T 3dou_A 87 EGIEKVDDVVSDA 99 (191)
T ss_dssp HTCSSEEEEEECC
T ss_pred ccCCcceEEecCC
Confidence 2599998853
No 223
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.17 E-value=1.1e-06 Score=74.75 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C------C-Cc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I------P-NA 223 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~------p-~~ 223 (276)
.+..+|||||||+|..+..+++..| +.+++++|. |.+++.+++ .++|+++.+|..+ + + + .|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3568999999999999999999998 789999998 888887765 3689999999875 2 2 3 49
Q ss_pred cEEEEcc
Q 046375 224 DALLLKW 230 (276)
Q Consensus 224 D~i~l~~ 230 (276)
|+|++..
T Consensus 158 D~V~~d~ 164 (247)
T 1sui_A 158 DFIFVDA 164 (247)
T ss_dssp SEEEECS
T ss_pred EEEEEcC
Confidence 9998754
No 224
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.14 E-value=1.8e-06 Score=73.12 Aligned_cols=67 Identities=16% Similarity=0.345 Sum_probs=55.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIP 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p 221 (276)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc
Confidence 345566666 6677899999999999999999985 78999999 888888876 3689999999988 555
No 225
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.14 E-value=1.4e-06 Score=77.13 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=56.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCCC---CC-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFHT---IP-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~~---~p-~~D~i~ 227 (276)
+.+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .+|+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999999878899999999 888877654 36899999998762 23 499999
Q ss_pred Ecc
Q 046375 228 LKW 230 (276)
Q Consensus 228 l~~ 230 (276)
+..
T Consensus 195 ~d~ 197 (321)
T 2pt6_A 195 VDS 197 (321)
T ss_dssp EEC
T ss_pred ECC
Confidence 854
No 226
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.14 E-value=3.1e-06 Score=76.83 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=61.6
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH--------------------------------------IKGI 192 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------l~~~ 192 (276)
+..++.... |.....|+|.+||+|.+++.++....+ .+++
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344555555 667789999999999999998876554 5799
Q ss_pred Eeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-CccEEEEc
Q 046375 193 NFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP-NADALLLK 229 (276)
Q Consensus 193 ~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p-~~D~i~l~ 229 (276)
++|. |.+++.+++ .++|+++.+|+++ +.+ .+|+|+++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N 314 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN 314 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence 9999 999988765 4579999999998 444 49999886
No 227
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.13 E-value=1.6e-06 Score=77.14 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=57.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC---CCC--CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH---TIP--NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~---~~p--~~D~i 226 (276)
+.+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4678999999999999999999888899999999 888887764 3689999999875 233 49999
Q ss_pred EEccc
Q 046375 227 LLKWV 231 (276)
Q Consensus 227 ~l~~v 231 (276)
++...
T Consensus 199 i~d~~ 203 (334)
T 1xj5_A 199 IVDSS 203 (334)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98543
No 228
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.13 E-value=2.9e-06 Score=76.91 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=61.3
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH--------------------------------------IKGI 192 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------l~~~ 192 (276)
+..++.... +....+|+|.+||+|.+++.++....+ .+++
T Consensus 184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 344555555 667789999999999999998877433 6799
Q ss_pred Eeec-hHHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEEc
Q 046375 193 NFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLLK 229 (276)
Q Consensus 193 ~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l~ 229 (276)
++|. |.+++.+++ .++|++..+|+.+ +.+. +|+|+++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~N 308 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITN 308 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEEC
Confidence 9999 999988876 3589999999998 4454 9999884
No 229
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.13 E-value=1.7e-06 Score=75.57 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=55.4
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC--C-CC-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH--T-IP-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~--~-~p-~~D~i~l 228 (276)
.+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 468999999999999999999888899999999 888877654 3689999999865 2 23 4999997
Q ss_pred c
Q 046375 229 K 229 (276)
Q Consensus 229 ~ 229 (276)
.
T Consensus 170 d 170 (296)
T 1inl_A 170 D 170 (296)
T ss_dssp E
T ss_pred c
Confidence 4
No 230
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.13 E-value=4.1e-06 Score=71.99 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=64.1
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC--CC------CeEEE--EccCCC-CCCCccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV--YD------GVTHV--SGDMFH-TIPNADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~--~~------ri~~~--~~d~~~-~~p~~D~i~l~~ 230 (276)
+....+|||||||+|.++..++++ .+++++|+..++..+++ .. +|.++ .+|+.+ +-..+|+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 456789999999999999999987 68999999446443332 11 68999 999987 312499999876
Q ss_pred cccCCCcccc--c---cCHHHHHHhHhhCC
Q 046375 231 VLHNWSDEAC--E---RTELEWKNIPEKGG 255 (276)
Q Consensus 231 vlh~~~~~~~--~---rt~~e~~~ll~~aG 255 (276)
. |..+.... . +...+...+|..-|
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG 177 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNP 177 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCC
Confidence 6 44333221 1 24566778888888
No 231
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.13 E-value=1e-06 Score=73.40 Aligned_cols=68 Identities=7% Similarity=-0.000 Sum_probs=56.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CC------CCcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TI------PNAD 224 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~------p~~D 224 (276)
.+..+|||||||+|..+..+++..| +.+++++|. |.+++.+++ .++++++.+|+.+ .+ ..+|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4568999999999999999999987 789999998 888877765 3689999999865 12 3599
Q ss_pred EEEEcc
Q 046375 225 ALLLKW 230 (276)
Q Consensus 225 ~i~l~~ 230 (276)
+|++..
T Consensus 148 ~v~~d~ 153 (229)
T 2avd_A 148 VAVVDA 153 (229)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998854
No 232
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.12 E-value=1.9e-06 Score=75.60 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=57.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC--C-CC-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH--T-IP-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~--~-~p-~~D~i~ 227 (276)
..+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4678999999999999999999888899999999 888877654 4689999999875 2 23 499999
Q ss_pred Ecccc
Q 046375 228 LKWVL 232 (276)
Q Consensus 228 l~~vl 232 (276)
+....
T Consensus 174 ~d~~~ 178 (304)
T 2o07_A 174 TDSSD 178 (304)
T ss_dssp EECC-
T ss_pred ECCCC
Confidence 85443
No 233
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.12 E-value=1.9e-06 Score=72.69 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=56.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C------C-Cc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I------P-NA 223 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~------p-~~ 223 (276)
.++.+|||||||+|..+..+++..| +.+++.+|. |.+++.+++ .++|+++.+|..+ + + + .|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3578999999999999999999988 789999999 888887765 3589999999876 2 2 3 49
Q ss_pred cEEEEc
Q 046375 224 DALLLK 229 (276)
Q Consensus 224 D~i~l~ 229 (276)
|+|++.
T Consensus 149 D~I~~d 154 (237)
T 3c3y_A 149 DFGFVD 154 (237)
T ss_dssp EEEEEC
T ss_pred CEEEEC
Confidence 999875
No 234
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.11 E-value=4.4e-06 Score=71.68 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=55.6
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCCCCCCccEEEEc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFHTIPNADALLLK 229 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~~~p~~D~i~l~ 229 (276)
+.+.+|||||||+|..+..+++. + .+++++|+ |.+++.+++ .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC
Confidence 35689999999999999999998 7 89999999 999998876 258999999988733459999975
No 235
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.11 E-value=2e-06 Score=74.60 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC--C-CC-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH--T-IP-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~--~-~p-~~D~i~ 227 (276)
+.+.+|||||||.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .+|+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999888899999999 888877654 3689999999876 2 24 499999
Q ss_pred Ecccc
Q 046375 228 LKWVL 232 (276)
Q Consensus 228 l~~vl 232 (276)
+....
T Consensus 157 ~d~~~ 161 (283)
T 2i7c_A 157 VDSSD 161 (283)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 85443
No 236
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.11 E-value=1.5e-06 Score=74.27 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=57.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC-CCCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH-TIPN-- 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~-~~p~-- 222 (276)
...+++.++ .....+|||||||+|.++. + .+.+..+++++|+ |.+++.+++ .++++++.+|+.+ +++.
T Consensus 10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHhcC--CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 344555555 5667899999999999999 5 4555444999999 899988776 2589999999988 5442
Q ss_pred ----ccEEEEcccccC
Q 046375 223 ----ADALLLKWVLHN 234 (276)
Q Consensus 223 ----~D~i~l~~vlh~ 234 (276)
.+.++.+|.-++
T Consensus 86 ~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHTSCEEEEEECCTT
T ss_pred cccCCceEEEECCCCC
Confidence 234555555433
No 237
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.09 E-value=6.4e-06 Score=66.63 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC---------CeEEEeechHHHhhCCCCCCeEEE-EccCCCC---------CC-
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH---------IKGINFDLPHVITTAPVYDGVTHV-SGDMFHT---------IP- 221 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~---------l~~~~~Dlp~~~~~a~~~~ri~~~-~~d~~~~---------~p- 221 (276)
+....+|||||||+|.++..+++++|. .+++++|+..+. ...+++++ .+|+.+. ++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 346789999999999999999999875 799999995421 23568999 9998762 33
Q ss_pred -CccEEEEccccc
Q 046375 222 -NADALLLKWVLH 233 (276)
Q Consensus 222 -~~D~i~l~~vlh 233 (276)
.+|+|++...+|
T Consensus 96 ~~fD~V~~~~~~~ 108 (196)
T 2nyu_A 96 RRADVILSDMAPN 108 (196)
T ss_dssp GCEEEEEECCCCC
T ss_pred CCCcEEEeCCCCC
Confidence 499999865544
No 238
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.08 E-value=2.2e-06 Score=75.50 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=59.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCC--C-CC-CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFH--T-IP-NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~--~-~p-~~D~i 226 (276)
+.+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .+|+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999888889999999 888877654 3689999999876 2 23 49999
Q ss_pred EEcccccC
Q 046375 227 LLKWVLHN 234 (276)
Q Consensus 227 ~l~~vlh~ 234 (276)
++....|.
T Consensus 156 i~d~~~~~ 163 (314)
T 1uir_A 156 IIDLTDPV 163 (314)
T ss_dssp EEECCCCB
T ss_pred EECCCCcc
Confidence 99766554
No 239
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.07 E-value=5.8e-06 Score=74.82 Aligned_cols=77 Identities=17% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH--------------------------------------IKGI 192 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------l~~~ 192 (276)
+..++.... |.....|+|.+||+|.+++..+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344555555 667789999999999999998876554 5699
Q ss_pred Eeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-CccEEEEc
Q 046375 193 NFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP-NADALLLK 229 (276)
Q Consensus 193 ~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p-~~D~i~l~ 229 (276)
++|. |.+++.+++ .++|+++.+|+.+ +.+ .+|+|+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N 307 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN 307 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence 9999 899988765 4579999999998 444 49999875
No 240
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.07 E-value=2.8e-06 Score=76.87 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCceEEEeeCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCC-CCC--------CccEE
Q 046375 164 SLKSLVDVAGG------IGGLISEIVKS-YPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFH-TIP--------NADAL 226 (276)
Q Consensus 164 ~~~~vlDvGgG------~G~~~~~l~~~-~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~-~~p--------~~D~i 226 (276)
+..+||||||| +|..+..++++ +|+.+++++|+ |.+. ...++|+++.+|+.+ +++ .||+|
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 56899999999 67777777765 59999999999 6653 236789999999988 433 49999
Q ss_pred EEcccccCCCc
Q 046375 227 LLKWVLHNWSD 237 (276)
Q Consensus 227 ~l~~vlh~~~~ 237 (276)
++. ..|.+.+
T Consensus 293 isd-gsH~~~d 302 (419)
T 3sso_A 293 IDD-GSHINAH 302 (419)
T ss_dssp EEC-SCCCHHH
T ss_pred EEC-Ccccchh
Confidence 875 4576644
No 241
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.06 E-value=1.4e-06 Score=73.25 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CC------CCccE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TI------PNADA 225 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~------p~~D~ 225 (276)
+..+|||||||+|..+..+++..| +.+++++|. |.+++.+++ .++|+++.+|..+ .+ ..+|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 789999998 888887765 3589999999754 12 34999
Q ss_pred EEEccc
Q 046375 226 LLLKWV 231 (276)
Q Consensus 226 i~l~~v 231 (276)
|++...
T Consensus 152 V~~d~~ 157 (232)
T 3cbg_A 152 IFIDAD 157 (232)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 987654
No 242
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.00 E-value=3.5e-06 Score=74.19 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=57.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCeEEEEccCCC--C-CC-CccEEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----------YDGVTHVSGDMFH--T-IP-NADALL 227 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----------~~ri~~~~~d~~~--~-~p-~~D~i~ 227 (276)
+.+.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ + .+ .||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999888899999999 888877654 3689999999876 2 23 499999
Q ss_pred Eccc
Q 046375 228 LKWV 231 (276)
Q Consensus 228 l~~v 231 (276)
+...
T Consensus 187 ~d~~ 190 (314)
T 2b2c_A 187 TDSS 190 (314)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 7543
No 243
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.96 E-value=8.4e-06 Score=71.47 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=52.3
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-----hHHHhhCCC--C--CCeEEEEc-cCCC-CCCCccEEEEcc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-----PHVITTAPV--Y--DGVTHVSG-DMFH-TIPNADALLLKW 230 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-----p~~~~~a~~--~--~ri~~~~~-d~~~-~~p~~D~i~l~~ 230 (276)
+....+|||||||+|.++..++++ .+++++|. +..++.... . ++|+++.+ |+.+ +...+|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 445689999999999999999987 47899998 544433222 2 67999999 9887 333599999866
Q ss_pred ccc
Q 046375 231 VLH 233 (276)
Q Consensus 231 vlh 233 (276)
.++
T Consensus 157 ~~~ 159 (305)
T 2p41_A 157 GES 159 (305)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 244
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.96 E-value=3.7e-06 Score=72.48 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=56.4
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-CC-----C-CccEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-TI-----P-NADAL 226 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~-----p-~~D~i 226 (276)
.....+|||+|||+|..+..+++..++ .+++++|. +.+++.+++ ..+++++.+|+.+ +. + .+|+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999999887 78999998 888877654 3489999999876 22 3 49999
Q ss_pred EEc
Q 046375 227 LLK 229 (276)
Q Consensus 227 ~l~ 229 (276)
++.
T Consensus 161 l~d 163 (274)
T 3ajd_A 161 LLD 163 (274)
T ss_dssp EEE
T ss_pred EEc
Confidence 975
No 245
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.95 E-value=6.4e-06 Score=73.29 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=59.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCCCC--CccEEEEcc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPH-----IKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHTIP--NADALLLKW 230 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~-----l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~~p--~~D~i~l~~ 230 (276)
...+|+|+|||+|.++..+++..+. .+++++|+ |.+++.++. .-++.++.+|.+++.+ .+|+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 5689999999999999999998875 68999999 888877765 3378999999998644 499999876
Q ss_pred cccCCC
Q 046375 231 VLHNWS 236 (276)
Q Consensus 231 vlh~~~ 236 (276)
-++.++
T Consensus 210 Pfg~~~ 215 (344)
T 2f8l_A 210 PVGYYP 215 (344)
T ss_dssp CCSEES
T ss_pred CCCCcC
Confidence 655554
No 246
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.91 E-value=1e-05 Score=70.01 Aligned_cols=97 Identities=22% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-CCC-CccEEEEccc-
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-TIP-NADALLLKWV- 231 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~~p-~~D~i~l~~v- 231 (276)
....+|||+|||+|.+++.++++ ...+++.+|+ |..++.+++ .++|+++.+|..+ +.. .||.|++..-
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence 46789999999999999999987 4568999999 888887765 6889999999987 222 3999887532
Q ss_pred ------------------ccCCC--cccc--ccCHHHHHHhHhhCCCCceE
Q 046375 232 ------------------LHNWS--DEAC--ERTELEWKNIPEKGGSPRYR 260 (276)
Q Consensus 232 ------------------lh~~~--~~~~--~rt~~e~~~ll~~aGf~~~~ 260 (276)
+|.+. .++. ....+.++++..+.|+.+..
T Consensus 203 ~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~ 253 (278)
T 3k6r_A 203 RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEE
Confidence 11110 0000 23567788999999998643
No 247
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.90 E-value=1.9e-05 Score=72.93 Aligned_cols=73 Identities=21% Similarity=0.164 Sum_probs=58.9
Q ss_pred HHhccccCCCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CC-
Q 046375 154 ILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IP- 221 (276)
Q Consensus 154 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p- 221 (276)
++..++ .....+|||+|||+|..+..+++..++ .+++++|. +..++.+++ ..+++++.+|+.+ + ++
T Consensus 251 ~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 251 ASIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred HHHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence 344445 556789999999999999999999987 79999998 777776654 3579999999987 3 55
Q ss_pred C-ccEEEE
Q 046375 222 N-ADALLL 228 (276)
Q Consensus 222 ~-~D~i~l 228 (276)
+ ||+|++
T Consensus 329 ~~fD~Vl~ 336 (450)
T 2yxl_A 329 EVADKVLL 336 (450)
T ss_dssp SCEEEEEE
T ss_pred CCCCEEEE
Confidence 3 999996
No 248
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.79 E-value=6.7e-06 Score=70.38 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-h-------HHHhhCCC-------CCCeEEEEccCCC--C-CC--
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-P-------HVITTAPV-------YDGVTHVSGDMFH--T-IP-- 221 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p-------~~~~~a~~-------~~ri~~~~~d~~~--~-~p-- 221 (276)
.....+|||+|||+|.++..+++. ..+++++|+ | .+++.+++ .+||+++.+|..+ + ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999996 568999999 7 67766654 3679999999876 2 43
Q ss_pred --CccEEEEcccccC
Q 046375 222 --NADALLLKWVLHN 234 (276)
Q Consensus 222 --~~D~i~l~~vlh~ 234 (276)
.+|+|++.-.++.
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 4999998766554
No 249
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.77 E-value=1.7e-05 Score=73.35 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=54.8
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CCC-ccEEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IPN-ADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p~-~D~i~l 228 (276)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. |+++.+|..+ + .++ ||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence 456789999999999999999999876 68999998 888877765 34 8999999876 2 344 999996
No 250
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=97.73 E-value=1.6e-05 Score=73.42 Aligned_cols=72 Identities=7% Similarity=0.053 Sum_probs=57.2
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CCC-
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IPN- 222 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p~- 222 (276)
+..++ .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+|.++.+|..+ + +++
T Consensus 98 ~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~ 175 (456)
T 3m4x_A 98 GTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGF 175 (456)
T ss_dssp HHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTC
T ss_pred HHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhcccc
Confidence 34444 556789999999999999999998765 68999998 888877665 4579999999876 2 444
Q ss_pred ccEEEE
Q 046375 223 ADALLL 228 (276)
Q Consensus 223 ~D~i~l 228 (276)
||+|++
T Consensus 176 FD~Il~ 181 (456)
T 3m4x_A 176 FDRIVV 181 (456)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999987
No 251
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=97.73 E-value=5.4e-05 Score=70.40 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--CCC-ccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--IPN-ADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~p~-~D~i~l 228 (276)
...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|..+ + .++ ||+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 678999999999999999999975 478999998 888877765 3579999999987 2 444 999997
No 252
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.72 E-value=3.1e-05 Score=68.72 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=53.8
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCCCCCCccEEEEc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFHTIPNADALLLK 229 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~~~p~~D~i~l~ 229 (276)
....+|||+|||+|.++.. ++ ...+++++|+ |.+++.+++ .++++++.+|.++....+|+|++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence 3568999999999999999 77 4778999999 888887765 368999999998844459999984
No 253
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.71 E-value=4.4e-05 Score=73.02 Aligned_cols=98 Identities=19% Similarity=0.157 Sum_probs=66.7
Q ss_pred cchhhcccChHHHHHHHHHHHhhhhhhHHHHHhcccc--CCCCCceEEEeeCCccHHH---HHHHHHC-CCCeEEEeech
Q 046375 124 AYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYKH--GFDSLKSLVDVAGGIGGLI---SEIVKSY-PHIKGINFDLP 197 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~--~~~~~~~vlDvGgG~G~~~---~~l~~~~-p~l~~~~~Dlp 197 (276)
..|+.+++|+-.-..|++|+.. ++.+.... ...+...|+|||||+|-+. ....++. -.+++++++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3578888898877788888743 22222210 1234568999999999984 4444432 22367899974
Q ss_pred HHHhhCCC-------CCCeEEEEccCCC-CCCC-ccEEEE
Q 046375 198 HVITTAPV-------YDGVTHVSGDMFH-TIPN-ADALLL 228 (276)
Q Consensus 198 ~~~~~a~~-------~~ri~~~~~d~~~-~~p~-~D~i~l 228 (276)
.++..+++ .++|+++.||+.+ .+|+ +|+|+.
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS 434 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS 434 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence 45544443 7899999999999 7885 999874
No 254
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.70 E-value=2.4e-05 Score=69.41 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=52.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CC-CeEEEEccCCCCC------C-CccEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YD-GVTHVSGDMFHTI------P-NADALL 227 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~-ri~~~~~d~~~~~------p-~~D~i~ 227 (276)
+..+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+ +++++.+|+++.. . .||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999999644 8999999 888887765 23 5999999998721 2 499999
Q ss_pred E
Q 046375 228 L 228 (276)
Q Consensus 228 l 228 (276)
+
T Consensus 231 ~ 231 (332)
T 2igt_A 231 T 231 (332)
T ss_dssp E
T ss_pred E
Confidence 8
No 255
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=97.68 E-value=6.5e-05 Score=68.81 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=53.1
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCCCC-CccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHTIP-NADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~~p-~~D~i~l~ 229 (276)
...+|||+|||+|.++..+++. ..+++++|. |.+++.+++ .+ ++|+.+|+.+..+ .+|+|++.
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~d 360 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVD 360 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEEC
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEc
Confidence 5689999999999999999986 458999998 888888765 23 9999999988544 59999883
No 256
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.66 E-value=8.5e-05 Score=63.89 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=64.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCC-C-------
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFH-T------- 219 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~-~------- 219 (276)
.+.+++.++ ......+||.+||.|.++..|+++ +.+++++|. |.+++.+++ .+|++++.+||.+ +
T Consensus 11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence 466777776 667789999999999999999998 789999999 888865543 3699999999976 1
Q ss_pred CCCccEEEE--cccccCCCcccc
Q 046375 220 IPNADALLL--KWVLHNWSDEAC 240 (276)
Q Consensus 220 ~p~~D~i~l--~~vlh~~~~~~~ 240 (276)
++.+|.|++ ...-+.+++.+.
T Consensus 87 ~~~vDgIL~DLGvSS~Qld~~~R 109 (285)
T 1wg8_A 87 VERVDGILADLGVSSFHLDDPSR 109 (285)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGG
T ss_pred CCCcCEEEeCCcccccccccccc
Confidence 235898885 333333443333
No 257
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.61 E-value=0.00011 Score=63.90 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=56.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCeEEEEccCCCC---CC-CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----------YDGVTHVSGDMFHT---IP-NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~d~~~~---~p-~~D~i 226 (276)
+++++||=||||.|..+..+++..|..+++++|+ |.|++.+++ .+|++++.+|.++- -+ .+|+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5789999999999999999998777778999999 999987754 57999999999872 22 49998
Q ss_pred EE
Q 046375 227 LL 228 (276)
Q Consensus 227 ~l 228 (276)
+.
T Consensus 162 i~ 163 (294)
T 3o4f_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 258
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.60 E-value=4.9e-05 Score=67.82 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=54.3
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--C------------CCeEEEEccCCC--C-C---C
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--Y------------DGVTHVSGDMFH--T-I---P 221 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--~------------~ri~~~~~d~~~--~-~---p 221 (276)
+++++|||||||+|..+..+++..| .+++++|+ |.+++.+++ . +|++++.+|.++ . . +
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 4689999999999999999998765 78999999 889887764 0 289999999987 2 1 2
Q ss_pred -CccEEEEc
Q 046375 222 -NADALLLK 229 (276)
Q Consensus 222 -~~D~i~l~ 229 (276)
.||+|++-
T Consensus 266 ~~fDvII~D 274 (364)
T 2qfm_A 266 REFDYVIND 274 (364)
T ss_dssp CCEEEEEEE
T ss_pred CCceEEEEC
Confidence 49999874
No 259
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=97.60 E-value=9.7e-05 Score=64.16 Aligned_cols=93 Identities=9% Similarity=0.021 Sum_probs=64.8
Q ss_pred CCCCceEEEeeCCc------cHHHHHHHHHCC-CCeEEEeechHHHhhCCCCCCeEE-EEccCCC-CCC-CccEEEEccc
Q 046375 162 FDSLKSLVDVAGGI------GGLISEIVKSYP-HIKGINFDLPHVITTAPVYDGVTH-VSGDMFH-TIP-NADALLLKWV 231 (276)
Q Consensus 162 ~~~~~~vlDvGgG~------G~~~~~l~~~~p-~l~~~~~Dlp~~~~~a~~~~ri~~-~~~d~~~-~~p-~~D~i~l~~v 231 (276)
+....+|||||||+ |. ..++++.| +.+++++|+.+.+ .++++ +.+|+.+ +++ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 56678999999944 77 55677777 6899999993322 46899 9999988 455 4999997543
Q ss_pred ccC-----CCcc-------cc--------------------ccCHHHHHHhHhhCCCCceEEE
Q 046375 232 LHN-----WSDE-------AC--------------------ERTELEWKNIPEKGGSPRYRII 262 (276)
Q Consensus 232 lh~-----~~~~-------~~--------------------~rt~~e~~~ll~~aGf~~~~~~ 262 (276)
.+. .+.. .. .....++.+++++.||..+++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE
Confidence 221 1110 11 1245689999999999877765
No 260
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.59 E-value=8.5e-05 Score=68.07 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=57.6
Q ss_pred HhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCC---CC--Cc
Q 046375 155 LAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHT---IP--NA 223 (276)
Q Consensus 155 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~---~p--~~ 223 (276)
+..++ .....+|||+|||+|..+..+++..|+.+++++|. +..++.+++ .-+++++.+|+.+. ++ .|
T Consensus 239 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 239 MTWLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred HHHcC--CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence 34444 45678999999999999999999999989999998 777766654 33589999999872 44 39
Q ss_pred cEEEE
Q 046375 224 DALLL 228 (276)
Q Consensus 224 D~i~l 228 (276)
|+|++
T Consensus 317 D~Vl~ 321 (429)
T 1sqg_A 317 DRILL 321 (429)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99996
No 261
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.59 E-value=3.7e-05 Score=65.75 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCCC--ceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------------C---CCeEEEEccCCC---CC
Q 046375 162 FDSL--KSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------------Y---DGVTHVSGDMFH---TI 220 (276)
Q Consensus 162 ~~~~--~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------------~---~ri~~~~~d~~~---~~ 220 (276)
.... .+|||+|||.|..+..++.+ +.+++++|. |.++..+++ . +|++++.+|..+ .+
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4445 79999999999999999998 568999998 654332221 1 579999999875 24
Q ss_pred C-CccEEEEcccccC
Q 046375 221 P-NADALLLKWVLHN 234 (276)
Q Consensus 221 p-~~D~i~l~~vlh~ 234 (276)
+ .+|+|++.-..+.
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 4 4999998665544
No 262
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.58 E-value=2.6e-05 Score=52.40 Aligned_cols=55 Identities=15% Similarity=0.382 Sum_probs=47.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
+..|+++|..++.++|..|||+.+|++. ..+.+.+..|...|++.... .++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr----~tv~~~l~~L~~~G~I~~~~-----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPK----KTLNQVLYRLKKEDRVSSPS-----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCH----HHHHHHHHHHHHTTSEEEEE-----TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEecCC-----CceEeeC
Confidence 4568889976546899999999999976 99999999999999988765 4888875
No 263
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.52 E-value=3.4e-05 Score=69.77 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=52.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CC-CeEEEEccCCC--C-C---C-CccEE
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YD-GVTHVSGDMFH--T-I---P-NADAL 226 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~-ri~~~~~d~~~--~-~---p-~~D~i 226 (276)
.+..+|||+|||+|.++..+++.. ..+++++|+ |.+++.+++ .+ +++++.+|+++ + + + .+|+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999863 237999998 888887765 23 89999999976 2 1 2 49999
Q ss_pred EE
Q 046375 227 LL 228 (276)
Q Consensus 227 ~l 228 (276)
++
T Consensus 290 i~ 291 (385)
T 2b78_A 290 II 291 (385)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 264
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.49 E-value=8.8e-05 Score=57.41 Aligned_cols=58 Identities=17% Similarity=0.066 Sum_probs=46.2
Q ss_pred CCCceEEEeeCCcc-HHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCeEEEEccCCCCCC----CccEEEEcc
Q 046375 163 DSLKSLVDVAGGIG-GLISEIVKSYPHIKGINFDL-PHVITTAPVYDGVTHVSGDMFHTIP----NADALLLKW 230 (276)
Q Consensus 163 ~~~~~vlDvGgG~G-~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~~~ri~~~~~d~~~~~p----~~D~i~l~~ 230 (276)
....++||||||+| ..+..|++. -+..+++.|+ |..++ ++..|+|+|.. +||+|..-+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir 97 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR 97 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC
Confidence 45689999999999 588888864 4678999998 66444 88999999754 599997765
No 265
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.48 E-value=0.00012 Score=71.34 Aligned_cols=77 Identities=19% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHH------------------------------------------CCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS------------------------------------------YPH 188 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~p~ 188 (276)
+..++.... |.....|+|.+||+|.+++.++.. .|+
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344455555 667789999999999999988765 245
Q ss_pred CeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC---CCC--CccEEEEc
Q 046375 189 IKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH---TIP--NADALLLK 229 (276)
Q Consensus 189 l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~---~~p--~~D~i~l~ 229 (276)
.+++++|. |.+++.++. .++|++..+|+.+ |.+ .+|+|+++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N 310 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN 310 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence 68999999 999988765 4579999999987 332 48998875
No 266
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=97.48 E-value=7.7e-05 Score=68.69 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=58.9
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhhCCC------CC--CeE
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-------------PHIKGINFDL-PHVITTAPV------YD--GVT 210 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~l~~~~~Dl-p~~~~~a~~------~~--ri~ 210 (276)
.+++.+. .....+|+|.|||+|.++..+.+.. +..+++++|+ |.++..++. .+ ++.
T Consensus 162 ~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 162 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 4444444 3456799999999999999988764 4567999999 888877654 22 788
Q ss_pred EEEccCCC-CCC-CccEEEEccccc
Q 046375 211 HVSGDMFH-TIP-NADALLLKWVLH 233 (276)
Q Consensus 211 ~~~~d~~~-~~p-~~D~i~l~~vlh 233 (276)
++.+|.+. +.+ .+|+|+++--++
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~ 264 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFG 264 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSS
T ss_pred EeeCCCCCCcccCCcCEEEECCCCC
Confidence 99999988 333 599999864443
No 267
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.47 E-value=6.3e-05 Score=68.41 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C----CCeEEEEccCCCC---CC--CccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----Y----DGVTHVSGDMFHT---IP--NADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~----~ri~~~~~d~~~~---~p--~~D~i~l~ 229 (276)
...+|||+|||+|..+..+++. ..+++++|. |.+++.++. . ++|+++.+|+.+. .+ .||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 3689999999999999999887 468999999 888887765 2 5799999999872 22 59999973
Q ss_pred cc------ccCCCccccccCHHHHHH-hHhhCCCCceEEEe
Q 046375 230 WV------LHNWSDEACERTELEWKN-IPEKGGSPRYRIIK 263 (276)
Q Consensus 230 ~v------lh~~~~~~~~rt~~e~~~-ll~~aGf~~~~~~~ 263 (276)
=- ---|.-+++.+...++.. +++.+..-.++..|
T Consensus 171 PPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP 211 (410)
T 3ll7_A 171 PARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP 211 (410)
T ss_dssp CEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred CCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence 11 112333555677888776 44454433444433
No 268
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.46 E-value=0.00023 Score=62.35 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC-C--C---CCccEEE
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH-T--I---PNADALL 227 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~--~---p~~D~i~ 227 (276)
.....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+|+++.+|+.+ + . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999985 5679999998 888877665 3579999999876 2 2 2489998
Q ss_pred E
Q 046375 228 L 228 (276)
Q Consensus 228 l 228 (276)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
No 269
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.46 E-value=0.00012 Score=66.46 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCeEEEEccCCCC---CC-CccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-----YDGVTHVSGDMFHT---IP-NADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-----~~ri~~~~~d~~~~---~p-~~D~i~l~ 229 (276)
...+|||+|||+|.++..+++.. .+++++|+ |.+++.+++ .-..++..+|.++. .+ .||+|++.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~d 287 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLD 287 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence 37899999999999999999974 45999999 888887765 11235668998872 33 39999974
No 270
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.41 E-value=4.8e-05 Score=68.92 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC--C-C---C-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH--T-I---P-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~--~-~---p-~~D~i~l 228 (276)
+..+|||+|||+|.++..+++. +..+++++|+ |.+++.+++ .++++++.+|+++ + + + .+|+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999987 4458999999 888887765 2389999999976 2 1 3 4999998
Q ss_pred c
Q 046375 229 K 229 (276)
Q Consensus 229 ~ 229 (276)
.
T Consensus 296 d 296 (396)
T 2as0_A 296 D 296 (396)
T ss_dssp C
T ss_pred C
Confidence 3
No 271
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.40 E-value=0.0001 Score=66.18 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=44.0
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCC
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFH 218 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~ 218 (276)
..+|||+|||+|.++..+++.. .+++++|. |.+++.+++ .++++++.+|..+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 4689999999999999998853 47999998 888887765 3589999999865
No 272
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.35 E-value=7e-05 Score=67.87 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------C-C-CeEEEEccCCCC---C---C-CccEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------Y-D-GVTHVSGDMFHT---I---P-NADALL 227 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~-~-ri~~~~~d~~~~---~---p-~~D~i~ 227 (276)
+..+|||+|||+|.++..+++.. ..+++++|+ |.+++.+++ . + +++++.+|+++. + + .+|+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 56899999999999999999974 458999999 888887765 2 3 899999999872 1 2 499999
Q ss_pred Ec
Q 046375 228 LK 229 (276)
Q Consensus 228 l~ 229 (276)
+.
T Consensus 299 ~d 300 (396)
T 3c0k_A 299 MD 300 (396)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 273
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.33 E-value=9.2e-05 Score=54.84 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=53.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhc--CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc-ccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSI--DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR-WLV 79 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~--~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~-~l~ 79 (276)
.+..|+..|.+. +++|+.+||+.+ |+++ ..+.+.|+.|...|+++..+ .+.|++|+.+. +|.
T Consensus 14 ~d~~IL~~L~~~-g~~s~~eLA~~l~~giS~----~aVs~rL~~Le~~GLV~~~~-----rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 14 WDDRILEIIHEE-GNGSPKELEDRDEIRISK----SSVSRRLKKLADHDLLQPLA-----NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHTSTTCCSCH----HHHHHHHHHHHHTTSEEECS-----TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHhcCCCH----HHHHHHHHHHHHCCCEEecC-----CceEEECchHHHHHH
Confidence 356688899765 799999999999 9976 89999999999999999876 46899999987 444
No 274
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.32 E-value=6.4e-05 Score=67.83 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=52.5
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCeEEEEccCCCC---C---C-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------YDGVTHVSGDMFHT---I---P-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~~---~---p-~~D~i~l 228 (276)
+..+|||+|||+|.++..+++. ..+++++|. |.+++.+++ .++++++.+|+++. + + .+|+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5689999999999999999998 568999998 888887765 24599999999772 1 3 4999997
No 275
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.30 E-value=0.00069 Score=60.83 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=53.4
Q ss_pred CCceEEEeeCCccHHHHHH--------HHHC-------CCCeEEEeechHH--------HhhCCC-----------C---
Q 046375 164 SLKSLVDVAGGIGGLISEI--------VKSY-------PHIKGINFDLPHV--------ITTAPV-----------Y--- 206 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l--------~~~~-------p~l~~~~~Dlp~~--------~~~a~~-----------~--- 206 (276)
+.-+|+|+|||+|..+..+ .+++ |..++..-|+|.- ++..++ .
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 4689999999999998776 3343 8888999998661 121110 0
Q ss_pred CCeEEEEccCCC-CCCC--ccEEEEcccccCCCc
Q 046375 207 DGVTHVSGDMFH-TIPN--ADALLLKWVLHNWSD 237 (276)
Q Consensus 207 ~ri~~~~~d~~~-~~p~--~D~i~l~~vlh~~~~ 237 (276)
-=+..++|.|.. .+|. +|+++.+.+||..++
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~ 165 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQ 165 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeecc
Confidence 124667788887 5773 999999999998873
No 276
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.28 E-value=0.00015 Score=52.04 Aligned_cols=56 Identities=7% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
.++.|+..| . ++.|..|||+.+|+++ ..+.+.|+.|...|++.+.. +.|++++.+.
T Consensus 32 ~r~~Il~~L-~--~~~~~~eLa~~l~is~----~tv~~~L~~L~~~Glv~~~~------g~y~l~~~g~ 87 (96)
T 1y0u_A 32 VRRKILRML-D--KGRSEEEIMQTLSLSK----KQLDYHLKVLEAGFCIERVG------ERWVVTDAGK 87 (96)
T ss_dssp HHHHHHHHH-H--TTCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECTTTC
T ss_pred HHHHHHHHH-c--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEC------CEEEECCCch
Confidence 456788888 5 7899999999999977 89999999999999999876 5899998754
No 277
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.28 E-value=0.00013 Score=50.42 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcc-hHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEIS-YIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~-~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
.+-.|.+.|... +|.|+.+||+.+|+++ . .+++.|..|...|+|.+.+. +.-.|++|+.+.
T Consensus 12 ~~~~IL~~Lk~~-g~~ta~eiA~~Lgit~----~~aVr~hL~~Le~eGlV~~~~~---gRP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV-SDSSALNLAKNIGLTK----ARDINAVLIDMERQGDVYRQGT---TPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGGG----HHHHHHHHHHHHHTTSEEEECS---SSCEEEECHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHcCCCc----HHHHHHHHHHHHHCCCEEecCC---CCCCeEeCHhHH
Confidence 355678888877 7999999999999977 7 99999999999999987652 234799988764
No 278
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.25 E-value=0.00035 Score=62.44 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCeEEEEccCCCC-CC--CccEEEEcccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPVYDGVTHVSGDMFHT-IP--NADALLLKWVL 232 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~-~p--~~D~i~l~~vl 232 (276)
+....++||+|++.|.++..++++ +.+++++|.-.+.+.....++|+++.+|.+.- .+ .+|++++-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 456789999999999999999998 67999999754444444578999999999983 32 38998875543
No 279
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=97.22 E-value=0.00017 Score=62.15 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=48.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|...+++.|+.|||+.+|++. ..+.|+|+.|+..|+|.+++ +++|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~k----sTv~RlL~tL~~~G~v~~~~-----~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPK----SSAHGLLAVMTELDLLARSA-----DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC------CHHHHHHHHHHTTSEEECT-----TSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEECC-----CCcEEehHHH
Confidence 457888887556899999999999987 99999999999999999987 4789998853
No 280
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.21 E-value=0.0011 Score=58.27 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=68.1
Q ss_pred hHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC--CCCeEEEEccCCC------C
Q 046375 150 LTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-PHIKGINFDL-PHVITTAPV--YDGVTHVSGDMFH------T 219 (276)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~l~~~~~Dl-p~~~~~a~~--~~ri~~~~~d~~~------~ 219 (276)
...++++.+. ......+||..+|.|..+..++++. |+.+++++|. |.+++.++. .+|++++.++|.+ .
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHH
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 3567788877 6677899999999999999999985 8899999999 888887754 6799999999976 1
Q ss_pred --CC-CccEEEEcc--cccCCCcccc
Q 046375 220 --IP-NADALLLKW--VLHNWSDEAC 240 (276)
Q Consensus 220 --~p-~~D~i~l~~--vlh~~~~~~~ 240 (276)
++ .+|.|++-. --+.+++.++
T Consensus 123 ~g~~~~vDgILfDLGVSS~QlD~~eR 148 (347)
T 3tka_A 123 RDLIGKIDGILLDLGVSSPQLDDAER 148 (347)
T ss_dssp TTCTTCEEEEEEECSCCHHHHHCGGG
T ss_pred cCCCCcccEEEECCccCHHHhcCCCC
Confidence 23 388887532 2234444444
No 281
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.20 E-value=0.0004 Score=66.79 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=65.4
Q ss_pred cchhhcccChHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHH----C---------CCCe
Q 046375 124 AYIDLASKDQQFNKIFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS----Y---------PHIK 190 (276)
Q Consensus 124 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~---------p~l~ 190 (276)
..|+.+.+|+-.-..|.+|+... +.+.+. .-.+.+.|+|||||+|-++...+++ . ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA-------LKDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH-------HHHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH-------HHHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 45777888888777788887542 112221 0134578999999999997433222 1 2347
Q ss_pred EEEeec-hHHHhhCCC------CCCeEEEEccCCC-CC------CC-ccEEEEccc
Q 046375 191 GINFDL-PHVITTAPV------YDGVTHVSGDMFH-TI------PN-ADALLLKWV 231 (276)
Q Consensus 191 ~~~~Dl-p~~~~~a~~------~~ri~~~~~d~~~-~~------p~-~D~i~l~~v 231 (276)
++++|- |..+...+. .++|+++.+|+.+ .+ |+ +|+|+.=..
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElm 504 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELL 504 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCC
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEecc
Confidence 899997 543322221 6899999999988 44 54 999975444
No 282
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.19 E-value=0.0003 Score=68.48 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=52.8
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C-CCeEEEEccCCCC---CC-CccEEEEc
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV-------Y-DGVTHVSGDMFHT---IP-NADALLLK 229 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~d~~~~---~p-~~D~i~l~ 229 (276)
+..+|||+|||+|.++..+++... .+++.+|+ |.+++.+++ . ++++++.+|.++. .+ .||+|++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 467999999999999999998543 36999999 888887765 2 5899999999872 23 49999973
No 283
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.18 E-value=0.00022 Score=64.35 Aligned_cols=65 Identities=11% Similarity=-0.072 Sum_probs=52.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-----------------CCeEEEEccCCCC--
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----Y-----------------DGVTHVSGDMFHT-- 219 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~-----------------~ri~~~~~d~~~~-- 219 (276)
...+|||+|||+|.+++.++++.|..+++++|+ |..++.+++ . ++++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 367999999999999999999998889999999 888776654 1 2388999998662
Q ss_pred -CC-CccEEEE
Q 046375 220 -IP-NADALLL 228 (276)
Q Consensus 220 -~p-~~D~i~l 228 (276)
.+ .||+|++
T Consensus 127 ~~~~~fD~I~l 137 (378)
T 2dul_A 127 ERHRYFHFIDL 137 (378)
T ss_dssp HSTTCEEEEEE
T ss_pred hccCCCCEEEe
Confidence 33 4899885
No 284
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.08 E-value=0.00042 Score=48.22 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=48.6
Q ss_pred HHHcChhhhhhhCC--CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 7 AIELRIPDIIHSHG--GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 7 a~~l~lf~~L~~~~--~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
-.+..|++.|.+.+ .++|+.|||+++|++. ..+.+.|.-|...|++...+. .++.|.+.+...
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr----~tV~~~L~~Le~~G~I~~~g~---~~~~W~i~~~~~ 74 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPK----KEINRVLYSLAKKGKLQKEAG---TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEESS---SSCEEEEC----
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEecCC---CCCeeEEeCcHH
Confidence 34667888888751 2799999999999976 899999999999999998752 357888877554
No 285
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.05 E-value=0.00034 Score=48.21 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=48.7
Q ss_pred HHHcChhhhhhhCCC---CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 7 AIELRIPDIIHSHGG---PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 7 a~~l~lf~~L~~~~~---~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-.+..|++.|... + ++|+.|||+++|++. ..+.+.|+-|...|++.+.+. .++.|.+++
T Consensus 14 ~~~~~IL~~L~~~-~~~~~~t~~eLA~~Lgvs~----~tV~~~L~~L~~~G~I~~~g~---~~~~W~i~~ 75 (77)
T 1qgp_A 14 DQEQRILKFLEEL-GEGKATTAHDLSGKLGTPK----KEINRVLYSLAKKGKLQKEAG---TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHH-CSSSCEEHHHHHHHHCCCH----HHHHHHHHHHHHHTSEEEECS---SSCEEEECC
T ss_pred HHHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEecCC---CCCceEecC
Confidence 3466788888875 4 799999999999976 899999999999999998762 357777765
No 286
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.02 E-value=0.00065 Score=49.13 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=47.8
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-.++.|+..|.. ++.|+.|||+.+|+++ ..+.+.|+.|...|+|.+... +..-.|++|+
T Consensus 23 ~~r~~Il~~L~~--~~~~~~ela~~l~is~----~tvs~~L~~L~~~Glv~~~~~--g~~~~y~l~~ 81 (102)
T 3pqk_A 23 PVRLMLVCTLVE--GEFSVGELEQQIGIGQ----PTLSQQLGVLRESGIVETRRN--IKQIFYRLTE 81 (102)
T ss_dssp HHHHHHHHHHHT--CCBCHHHHHHHHTCCT----THHHHHHHHHHHTTSEEEECS--SSCCEEEECS
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe--CCEEEEEECc
Confidence 346678888876 7899999999999988 899999999999999988762 2233577765
No 287
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.91 E-value=0.00028 Score=60.20 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=49.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|....++.|+.|||+.+|++. ..+.|+|+.|+..|+|.+++. +++|++++..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~k----sT~~RlL~tL~~~G~v~~~~~----~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNK----ATVYRLMSELQEAGFVEQVEG----ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCH----HHHHHHHHHHHHTTSEEECSS----SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEcCC----CCcEEcCHHH
Confidence 457777875437899999999999987 999999999999999999872 4899998853
No 288
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.87 E-value=0.00051 Score=49.26 Aligned_cols=59 Identities=12% Similarity=0.267 Sum_probs=47.8
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-.++.|+..|.. ++.|+.|||+.+|+++ ..+.+.|+.|...|++.+... |..-.|++++
T Consensus 23 ~~r~~Il~~L~~--~~~~~~ela~~l~is~----~tvs~~L~~L~~~Glv~~~~~--g~~~~y~l~~ 81 (98)
T 3jth_A 23 ERRLQILCMLHN--QELSVGELCAKLQLSQ----SALSQHLAWLRRDGLVTTRKE--AQTVYYTLKS 81 (98)
T ss_dssp HHHHHHHHHTTT--SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECC--TTCCEEEECC
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEe--CCEEEEEECH
Confidence 346678888887 7999999999999977 999999999999999988762 1223476665
No 289
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.86 E-value=0.00034 Score=63.29 Aligned_cols=66 Identities=11% Similarity=-0.051 Sum_probs=53.7
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC-------CCC-eEEEEccCCC----CCC-CccEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPH-IKGINFDL-PHVITTAPV-------YDG-VTHVSGDMFH----TIP-NADALLL 228 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~-l~~~~~Dl-p~~~~~a~~-------~~r-i~~~~~d~~~----~~p-~~D~i~l 228 (276)
...+|||++||+|.+++.++.+.++ .+++.+|. |..++.+++ .++ ++++.+|.++ ..+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4689999999999999999998766 47899999 888887765 345 9999999865 233 4999987
Q ss_pred c
Q 046375 229 K 229 (276)
Q Consensus 229 ~ 229 (276)
-
T Consensus 132 D 132 (392)
T 3axs_A 132 D 132 (392)
T ss_dssp C
T ss_pred C
Confidence 4
No 290
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=96.82 E-value=0.0014 Score=58.99 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=53.0
Q ss_pred CceEEEeeCCccHHHHHHHHH-----------------CCCCeEEEeechH------------HHhhCCC-----CCC--
Q 046375 165 LKSLVDVAGGIGGLISEIVKS-----------------YPHIKGINFDLPH------------VITTAPV-----YDG-- 208 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~-----------------~p~l~~~~~Dlp~------------~~~~a~~-----~~r-- 208 (276)
.-+|+|+||++|..+..+... .|++.++.-|+|. ..+.+++ .+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999999887776 5778888889882 1111111 111
Q ss_pred eEEEEccCCC-CCCC--ccEEEEcccccCCCcc
Q 046375 209 VTHVSGDMFH-TIPN--ADALLLKWVLHNWSDE 238 (276)
Q Consensus 209 i~~~~~d~~~-~~p~--~D~i~l~~vlh~~~~~ 238 (276)
+..++|.|+. .+|. +|+++.+.+||..++.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~ 165 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV 165 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSS
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCC
Confidence 4456678877 5773 9999999999987653
No 291
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.81 E-value=0.00056 Score=57.66 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=48.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|...+++.|+.|||+.+|++. ..+.|+|+.|...|+|.+++. +++|++++..
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~----stv~r~l~~L~~~G~v~~~~~----~~~Y~lg~~~ 66 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPR----STVQRIINALEEEFLVEALGP----AGGFRLGPAL 66 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCH----HHHHHHHHHHHTTTSEEECGG----GCEEEECSHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEeCC----CCeEEECHHH
Confidence 456777776545799999999999977 999999999999999999862 3789998854
No 292
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=96.81 E-value=0.0012 Score=56.33 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=71.0
Q ss_pred CCceEEEeeCCccHHHHHHHHH-------CCC-----CeEEEeec-h---HHHh-----------hCC------------
Q 046375 164 SLKSLVDVAGGIGGLISEIVKS-------YPH-----IKGINFDL-P---HVIT-----------TAP------------ 204 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~-------~p~-----l~~~~~Dl-p---~~~~-----------~a~------------ 204 (276)
+..+|||||+|+|..+..+++. .|+ ++++.+|. | +.+. .++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999999887765 684 68899986 4 2221 111
Q ss_pred ------C--CCCeEEEEccCCC--C-CC-----CccEEEEc-cccc---C-CCcccc--------------cc-CHHHHH
Q 046375 205 ------V--YDGVTHVSGDMFH--T-IP-----NADALLLK-WVLH---N-WSDEAC--------------ER-TELEWK 248 (276)
Q Consensus 205 ------~--~~ri~~~~~d~~~--~-~p-----~~D~i~l~-~vlh---~-~~~~~~--------------~r-t~~e~~ 248 (276)
. ..+++++.||..+ + ++ .+|+|++- +.-. . |.++-- -+ ....++
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~~vr 219 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVR 219 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBHHHH
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCHHHH
Confidence 1 2467899999866 2 32 48999873 1110 1 222111 01 256788
Q ss_pred HhHhhCCCCceEEEecCCccEEEEEec
Q 046375 249 NIPEKGGSPRYRIIKIPALQCIIESYP 275 (276)
Q Consensus 249 ~ll~~aGf~~~~~~~~~~~~~vi~a~~ 275 (276)
+.|.++||++.++...++-.-++.+.+
T Consensus 220 r~L~~aGF~v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 220 RGLQEAGFTMQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp HHHHHHTEEEEEECCSTTCCCEEEEEE
T ss_pred HHHHHCCCEEEeCCCCCCCCceEEEEe
Confidence 999999999876654444455665554
No 293
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.80 E-value=0.00099 Score=46.09 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=39.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
..|++.|... ++.|..|||+.+|+++ ..+.+.|+.|...|++.+..
T Consensus 3 ~~Il~~L~~~-~~~s~~eLa~~lgvs~----~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 3 NEILEFLNRH-NGGKTAEIAEALAVTD----YQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHS-CCCCHHHHHHHHTSCH----HHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEec
Confidence 3467778765 6899999999999977 99999999999999999643
No 294
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.79 E-value=0.0008 Score=56.94 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=48.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
+.|++.|...+++.|+.|||+.+|++. ..+.|+|+.|...|++.++. .++|++++.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~----stv~r~l~~L~~~G~v~~~~-----~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSV----SNAYKYMVVLEEKGFVLRKK-----DKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECT-----TSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEECC-----CCcEEECHH
Confidence 456778876535899999999999977 99999999999999999984 488999885
No 295
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.75 E-value=0.0007 Score=50.80 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=46.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
.++.|+..|... ++.|+.|||+.+|+++ ..+.+.|+.|...|++..... |..-.|++++.
T Consensus 43 ~rl~IL~~L~~~-~~~s~~eLa~~l~is~----stvs~~L~~L~~~Glv~~~~~--gr~~~y~l~~~ 102 (122)
T 1u2w_A 43 NRAKITYALCQD-EELCVCDIANILGVTI----ANASHHLRTLYKQGVVNFRKE--GKLALYSLGDE 102 (122)
T ss_dssp HHHHHHHHHHHS-SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEC------CCEEEESCH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEE--CCEEEEEECHH
Confidence 467889999854 7899999999999977 999999999999999988761 11224776653
No 296
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.74 E-value=0.00072 Score=57.52 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=50.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
+.|++.|...+++.|+.|||+.+|++. ..+.|+|+.|...|+|.+++ ++|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~----stv~r~l~~L~~~G~v~~~~------~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSR----PAVRRILLTLQKLGYVAGSG------GRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeCC------CEEEEcHHHHHHH
Confidence 456777765446899999999999977 99999999999999999976 8999998654333
No 297
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=96.68 E-value=0.0038 Score=52.10 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHH-Hh--hCCC---CCCeEEEEc-cCCC-CCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHV-IT--TAPV---YDGVTHVSG-DMFH-TIPN 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~-~~--~a~~---~~ri~~~~~-d~~~-~~p~ 222 (276)
..++.+.+. +....+|||+||+.|.++..++....-.+++++|+-.. .+ ...+ -.-|+|..+ |++. +.-.
T Consensus 67 L~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 67 LQWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 445566664 66677999999999999998888776668999998222 11 1112 467999999 9875 2223
Q ss_pred ccEEEEcc
Q 046375 223 ADALLLKW 230 (276)
Q Consensus 223 ~D~i~l~~ 230 (276)
+|.+++-.
T Consensus 145 ~DtllcDI 152 (267)
T 3p8z_A 145 CDTLLCDI 152 (267)
T ss_dssp CSEEEECC
T ss_pred ccEEEEec
Confidence 89877643
No 298
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.67 E-value=0.00071 Score=49.72 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=47.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
.++.|+..|.. ++.|..|||+.+|+++ ..+.+.|+.|...|++.+... +....|++|+.+
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~is~----~tv~~~l~~L~~~gli~~~~~--gr~~~y~l~~~~ 81 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPVSR----QAIAKHLNALQACGLVESVKV--GREIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSSCH----HHHHHHHHHHHHTTSEEEEEE--TTEEEEEECSHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeEEec--CCEEEEEechHH
Confidence 46778888854 7899999999999977 999999999999999988651 011237776643
No 299
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.64 E-value=0.0011 Score=45.93 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=48.8
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
.....|.++|.++ +.|+.|||+.+|++. ..+++.|+.|...|++...+ +++-.|+++...
T Consensus 17 ~~~~~IL~lL~~~--g~sa~eLAk~LgiSk----~aVr~~L~~Le~eG~I~~~~---~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE--GATAAQLTRQLNMEK----REVNKALYDLQRSAMVYSSD---DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS--TEEHHHHHHHSSSCH----HHHHHHHHHHHHHTSSEECS---SSSCEEESCC--
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeCC---CCCCcceeccCc
Confidence 3456688889874 399999999999977 99999999999999999886 346678887653
No 300
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.62 E-value=0.00087 Score=46.12 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=40.3
Q ss_pred ChhhhhhhC-----CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIHSH-----GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~~~-----~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|++.|... |+|.|+.|||+.+|+++ ..+.+-|..|...|++.+..
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~----~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSI----YQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCcEEecC
Confidence 366667654 68999999999999977 88999999999999999986
No 301
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.62 E-value=0.00094 Score=56.90 Aligned_cols=56 Identities=7% Similarity=0.260 Sum_probs=47.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
+.|++.|....++.|+.|||+.+|++. ..+.|+|+.|...|++.+++ .++|++++.
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~k----stv~r~l~tL~~~G~v~~~~-----~~~Y~lg~~ 81 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPK----TTVVRLVATMCARSVLTSRA-----DGSYSLGPE 81 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCH----HHHHHHHHHHHHTTSEEECT-----TSCEEECHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEECC-----CCeEEecHH
Confidence 456777764336899999999999977 99999999999999999987 248999875
No 302
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.60 E-value=0.00078 Score=48.07 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=47.4
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
-.++.|+..|... ++.|..|||+.+|+++ ..+.+.|+.|...|++.+... +....|++|+.
T Consensus 24 ~~~~~il~~l~~~-~~~s~~ela~~l~is~----~tvs~~l~~L~~~glv~~~~~--~r~~~y~l~~~ 84 (99)
T 3cuo_A 24 PKRLLILCMLSGS-PGTSAGELTRITGLSA----SATSQHLARMRDEGLIDSQRD--AQRILYSIKNE 84 (99)
T ss_dssp HHHHHHHHHHTTC-CSEEHHHHHHHHCCCH----HHHHHHHHHHHHTTSEEEEEC--SSCEEEEECCH
T ss_pred hHHHHHHHHHHhC-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEec--CCEEEEEEChH
Confidence 3566788888763 5899999999999977 999999999999999998761 11224666653
No 303
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=96.58 E-value=0.0007 Score=57.89 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=48.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~ 75 (276)
+.|++.|....++.|+.|||+.+|++. ..+.|+|+.|...|+|.+++ ++|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~----stv~r~l~tL~~~G~v~~~~------~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTR----ATARRFLLTLVELGYVATDG------SAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEESS------SEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEecC------CEEEEcHHH
Confidence 456777765336899999999999977 99999999999999999976 899998853
No 304
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=96.57 E-value=0.0019 Score=60.89 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=54.3
Q ss_pred HHHhccccCCCCCceEEEeeCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHhhCCC------CC
Q 046375 153 EILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYP------------------HIKGINFDL-PHVITTAPV------YD 207 (276)
Q Consensus 153 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p------------------~l~~~~~Dl-p~~~~~a~~------~~ 207 (276)
.+++.++ .....+|+|.+||+|.++..+.+... ..+++++|+ |.++..++. .+
T Consensus 160 ~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 160 TIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 3344444 34567999999999999998887532 247899998 887776653 22
Q ss_pred -----CeEEEEccCCC-C---CCCccEEEEc
Q 046375 208 -----GVTHVSGDMFH-T---IPNADALLLK 229 (276)
Q Consensus 208 -----ri~~~~~d~~~-~---~p~~D~i~l~ 229 (276)
++.+..+|.+. + .+.||+|+++
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N 268 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATN 268 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEEC
Confidence 27889999987 2 2359999985
No 305
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=96.52 E-value=0.0026 Score=56.76 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=52.5
Q ss_pred CCCceEEEeeCCccHHHHHHHHH----------------CCCCeEEEeechH-----HHhhCCC----CC--CeEEEEcc
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKS----------------YPHIKGINFDLPH-----VITTAPV----YD--GVTHVSGD 215 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~----------------~p~l~~~~~Dlp~-----~~~~a~~----~~--ri~~~~~d 215 (276)
++.-+|+|+||++|..+..+... .|...+..-|+|. +-..... .+ -+..++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45678999999999777544333 5777788889865 2222221 11 14567788
Q ss_pred CCC-CCCC--ccEEEEcccccCCCc
Q 046375 216 MFH-TIPN--ADALLLKWVLHNWSD 237 (276)
Q Consensus 216 ~~~-~~p~--~D~i~l~~vlh~~~~ 237 (276)
|+. .+|. +|+++.+..||..++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~ 154 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQ 154 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSS
T ss_pred hhhccCCCCceEEEEehhhhhhccc
Confidence 887 5773 999999999998765
No 306
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.51 E-value=0.0016 Score=44.95 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=39.7
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
|.+.|.+. +.++++|||+.+++++ ..++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~----~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQ----PMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCH----HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEe
Confidence 66778776 7999999999999987 9999999999999999998
No 307
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.49 E-value=0.00078 Score=50.20 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=49.3
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 5 KCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 5 ~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
.--.++.|+..|.. +|.|+.|||+.+|+++ ..+.+.|+.|...|+|..... |..-.|++++.
T Consensus 16 ~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~----~tvs~hL~~L~~~GlV~~~~~--gr~~~y~l~~~ 77 (118)
T 3f6o_A 16 ADPTRRAVLGRLSR--GPATVSELAKPFDMAL----PSFMKHIHFLEDSGWIRTHKQ--GRVRTCAIEKE 77 (118)
T ss_dssp TSHHHHHHHHHHHT--CCEEHHHHHTTCCSCH----HHHHHHHHHHHHTTSEEEEEE--TTEEEEEECSH
T ss_pred CCHHHHHHHHHHHh--CCCCHHHHHHHhCcCH----HHHHHHHHHHHHCCCeEEEec--CCEEEEEECHH
Confidence 33457889999985 8999999999999977 999999999999999987762 11124777663
No 308
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.48 E-value=0.001 Score=48.54 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=42.6
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
-.++.|+..|.. ++.|+.|||+.+|+++ ..+.+.|+.|...|++....
T Consensus 26 ~~r~~IL~~L~~--~~~~~~ela~~l~is~----stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 26 YNRIRIMELLSV--SEASVGHISHQLNLSQ----SNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHHHHHH--CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEE
Confidence 346778888885 7899999999999977 99999999999999998776
No 309
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.46 E-value=0.0015 Score=45.89 Aligned_cols=44 Identities=11% Similarity=0.349 Sum_probs=40.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
|.+.|.+. +.++++|||+.+++++ ..++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~----~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQ----PLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCH----HHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 66778776 7999999999999987 99999999999999999984
No 310
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.41 E-value=0.0034 Score=55.87 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=43.3
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC---CCCCeEEEEccCCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP---VYDGVTHVSGDMFH 218 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~---~~~ri~~~~~d~~~ 218 (276)
....|||||.|.|.++..|+++....++++++. +..++..+ ..++++++.+|+++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 358899999999999999999754457888887 55554443 25799999999975
No 311
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.40 E-value=0.0011 Score=49.45 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=47.6
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
-.++.|+..|.. ++.+..|||+.+|+++ ..+.+.|+.|...|++..... +..-.|++++.
T Consensus 21 ~~r~~IL~~L~~--~~~~~~eLa~~lgis~----stvs~~L~~L~~~GlV~~~~~--gr~~~y~l~~~ 80 (118)
T 2jsc_A 21 PTRCRILVALLD--GVCYPGQLAAHLGLTR----SNVSNHLSCLRGCGLVVATYE--GRQVRYALADS 80 (118)
T ss_dssp HHHHHHHHHHHT--TCCSTTTHHHHHSSCH----HHHHHHHHHHTTTTSEEEEEC--SSSEEEEESSH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCceEEEEE--CCEEEEEEChH
Confidence 356778888885 7899999999999977 999999999999999987651 11124777663
No 312
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.35 E-value=0.0024 Score=45.77 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=47.1
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
|...|.. + ++..+||..+|+++ +.+...++.|...|++.+.. +.|.+|+.|..+.
T Consensus 13 IL~~i~~--~-~~~t~La~~~~ls~----~~~~~~l~~L~~~GLI~~~~------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 13 ILEACKS--G-SPKTRIMYGANLSY----ALTGRYIKMLMDLEIIRQEG------KQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHTT--C-BCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECHHHHHHH
T ss_pred HHHHHHc--C-CCHHHHHHHhCcCH----HHHHHHHHHHHHCCCeEEEC------CeeEEChhHHHHH
Confidence 4445543 5 99999999999988 99999999999999999987 7899999987443
No 313
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.33 E-value=0.0032 Score=56.38 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------------CCCeEEEEccCCC---C----CC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV--------------YDGVTHVSGDMFH---T----IP 221 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~--------------~~ri~~~~~d~~~---~----~p 221 (276)
.+++||=||||.|..++.+++ +|..+++++|+ |.|++.+++ .+|++++.+|.++ . -.
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 468999999999999999997 56678999999 999887653 3579999999865 1 12
Q ss_pred CccEEEEc
Q 046375 222 NADALLLK 229 (276)
Q Consensus 222 ~~D~i~l~ 229 (276)
.||+|+.=
T Consensus 284 ~yDvIIvD 291 (381)
T 3c6k_A 284 EFDYVIND 291 (381)
T ss_dssp CEEEEEEE
T ss_pred ceeEEEEC
Confidence 49998863
No 314
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.28 E-value=0.0035 Score=47.28 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=42.7
Q ss_pred hhhhhhhC--CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 12 IPDIIHSH--GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 12 lf~~L~~~--~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
+...|... +++.|.+|||+.+|+|+ ..+.++|+.|...|++..... ..|.|.++..
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i~~----~~v~~il~~L~~~Glv~~~~g---~~ggy~L~~~ 71 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNLSE----HYLEQLVSPLRNAGLVKSIRG---AYGGYVLGSE 71 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTSCH----HHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCcCH----HHHHHHHHHHHHCCceEecCC---CCCceEeCCC
Confidence 44455432 36899999999999988 999999999999999988741 1367887663
No 315
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.25 E-value=0.0028 Score=46.24 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=46.3
Q ss_pred ChhhhhhhCCCCCCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 11 RIPDIIHSHGGPITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
.|+..|.. ++.+..||++.+ |+++ ..+.+.|+.|...|++++....++. .-.|++|+.+..
T Consensus 18 ~IL~~L~~--~~~~~~eLa~~l~~is~----~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~ 80 (107)
T 2hzt_A 18 VILXHLTH--GKKRTSELKRLMPNITQ----KMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRS 80 (107)
T ss_dssp HHHHHHTT--CCBCHHHHHHHCTTSCH----HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGG
T ss_pred HHHHHHHh--CCCCHHHHHHHhcCCCH----HHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHH
Confidence 35666664 799999999999 9977 9999999999999999987521000 114888887643
No 316
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.25 E-value=0.0023 Score=48.87 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=46.8
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 13 PDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 13 f~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
+..+... ++.|..+||+.+++++ ..+.+.++.|...|+|.+.. ...|.+|+.+..+.
T Consensus 14 ~~l~~~~-~~~~~~ela~~l~vs~----~tvs~~l~~Le~~Glv~r~~-----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 14 YMLIEEK-GYARVSDIAEALAVHP----SSVTKMVQKLDKDEYLIYEK-----YRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHHHHH-SSCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEET-----TTEEEECHHHHHHH
T ss_pred HHHHhhc-CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEee-----CceEEEchhHHHHH
Confidence 3444433 6899999999999977 99999999999999999987 36899999875433
No 317
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.24 E-value=0.00058 Score=50.10 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=40.8
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.|+..|.. ++.|+.|||+.+|+++ ..+.+.|+.|...|++.+..
T Consensus 27 r~~IL~~L~~--~~~s~~eLa~~lgis~----stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 27 RLQILDLLAQ--GERAVEAIATATGMNL----TTASANLQALKSGGLVEARR 72 (108)
T ss_dssp THHHHHHHTT--CCEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHc--CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEE
Confidence 4567788875 7899999999999987 99999999999999998765
No 318
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=96.24 E-value=0.0017 Score=61.22 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=48.5
Q ss_pred CceEEEeeCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHhhCCC-------CCCeEEEEccCCC-C-
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYP---------------HIKGINFDL-PHVITTAPV-------YDGVTHVSGDMFH-T- 219 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p---------------~l~~~~~Dl-p~~~~~a~~-------~~ri~~~~~d~~~-~- 219 (276)
..+|+|.+||+|.++..+.+..+ ..+++++|+ |.++..++. ..+|.+..+|.+. +
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 35999999999999998866543 467899998 888777654 3345558899886 3
Q ss_pred CC--CccEEEE
Q 046375 220 IP--NADALLL 228 (276)
Q Consensus 220 ~p--~~D~i~l 228 (276)
.+ .||+|++
T Consensus 325 ~~~~~fD~Iv~ 335 (544)
T 3khk_A 325 HPDLRADFVMT 335 (544)
T ss_dssp CTTCCEEEEEE
T ss_pred cccccccEEEE
Confidence 33 4999997
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.24 E-value=0.0014 Score=45.43 Aligned_cols=48 Identities=8% Similarity=0.283 Sum_probs=41.2
Q ss_pred HcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHG-GPITSSQIASSI-----DSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~-~~~t~~eLA~~~-----~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+..|++.|...+ ++.|++||++.+ +++. .-+.|.|+.|...|+|.+..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~----~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGL----ATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCH----HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCH----hhHHHHHHHHHHCCCeEEEe
Confidence 445888887653 589999999999 8866 89999999999999999875
No 320
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.22 E-value=0.002 Score=47.50 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=48.6
Q ss_pred HcChhhhhhhCCCCCC--HHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPIT--SSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t--~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
++.|+..|.. ++.+ ..||++.+ |+++ ..+.+.|+.|...|+|++... -.-.|++|+.+..+.
T Consensus 29 rl~IL~~L~~--g~~~~~~~eL~~~l~gis~----~~ls~~L~~Le~~GlV~r~~~---r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 29 TMLIISVLGN--GSTRQNFNDIRSSIPGISS----TILSRRIKDLIDSGLVERRSG---QITTYALTEKGMNVR 93 (111)
T ss_dssp HHHHHHHHTS--SSSCBCHHHHHHTSTTCCH----HHHHHHHHHHHHTTSEEEEES---SSEEEEECHHHHHHH
T ss_pred HHHHHHHHhc--CCCCCCHHHHHHHccCCCH----HHHHHHHHHHHHCCCEEEeec---CcEEEEECccHHHHH
Confidence 3446666764 7888 99999999 9977 999999999999999999741 014688888776444
No 321
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=96.21 E-value=0.006 Score=59.67 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCC---CCeEEEeec-hHHHhhC--CC----------CCCeEEEEccCCCC----CCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYP---HIKGINFDL-PHVITTA--PV----------YDGVTHVSGDMFHT----IPN 222 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p---~l~~~~~Dl-p~~~~~a--~~----------~~ri~~~~~d~~~~----~p~ 222 (276)
....+|+|.|||+|.++..++++.+ ..+++++|+ |.++..+ +. .+...+...|++.+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4568999999999999999999886 357899998 7776655 11 12235666777762 225
Q ss_pred ccEEEE
Q 046375 223 ADALLL 228 (276)
Q Consensus 223 ~D~i~l 228 (276)
+|+|++
T Consensus 400 FDVVIg 405 (878)
T 3s1s_A 400 VSVVVM 405 (878)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999987
No 322
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.16 E-value=0.0019 Score=50.42 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=49.5
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 5 KCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 5 ~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
.--.++.|+..|.. ++.|+.|||+.+|+++ ..+.+.|+.|...|+|..... |..-.|++|+.
T Consensus 56 ~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~----stvs~hL~~L~~aGlV~~~~~--Gr~~~y~lt~~ 117 (151)
T 3f6v_A 56 AEPTRRRLVQLLTS--GEQTVNNLAAHFPASR----SAISQHLRVLTEAGLVTPRKD--GRFRYYRLDPQ 117 (151)
T ss_dssp TSHHHHHHHHHGGG--CCEEHHHHHTTSSSCH----HHHHHHHHHHHHTTSEEEEEE--TTEEEEEECHH
T ss_pred CCHHHHHHHHHHHh--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEec--CCEEEEEEChH
Confidence 33457889999985 7999999999999976 999999999999999988762 11124777764
No 323
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.15 E-value=0.0013 Score=46.92 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=51.4
Q ss_pred HhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCC-CCCCCeEecCcccc
Q 046375 3 ALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPS-DGGEPLYGLTHSSR 76 (276)
Q Consensus 3 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~-~~~~~~y~~t~~~~ 76 (276)
++..-.++.|+..|... ++.|..|||+.+|+++ ..+.+.|+.|...|++.+.... ++....|++|+.+.
T Consensus 12 ~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~----~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTP----GNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred ccCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 44455678889888654 6899999999999977 9999999999999999964310 01112477777653
No 324
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=96.10 E-value=0.0043 Score=58.45 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCceEEEeeCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhCCC--------CCCeEEEEccCCCC-CC-----CccE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSY---PHIKGINFDL-PHVITTAPV--------YDGVTHVSGDMFHT-IP-----NADA 225 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~---p~l~~~~~Dl-p~~~~~a~~--------~~ri~~~~~d~~~~-~p-----~~D~ 225 (276)
...+|+|.+||+|.++..+.+.. +..+++++|+ |.++..++. .+++.+..+|.+.. +| .+|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999999885 3678999999 777776653 25788999999863 22 3999
Q ss_pred EEEc
Q 046375 226 LLLK 229 (276)
Q Consensus 226 i~l~ 229 (276)
|+.+
T Consensus 301 IvaN 304 (542)
T 3lkd_A 301 VLMN 304 (542)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9964
No 325
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=96.08 E-value=0.0087 Score=51.20 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=51.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCC-eEEEEc-cCCCCCC--
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLP-HVITTAPV----YDG-VTHVSG-DMFHTIP-- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp-~~~~~a~~----~~r-i~~~~~-d~~~~~p-- 221 (276)
..++.+.+. +....+|||+|||.|.++..++++.+-..++++|+- .....+.. ..+ +.+... |+.. ++
T Consensus 79 L~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~ 155 (282)
T 3gcz_A 79 LRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVI 155 (282)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCC
Confidence 445556654 666779999999999999999988777678888872 11111111 223 333333 4433 33
Q ss_pred CccEEEEccccc
Q 046375 222 NADALLLKWVLH 233 (276)
Q Consensus 222 ~~D~i~l~~vlh 233 (276)
.+|+|++-...+
T Consensus 156 ~~DvVLSDmApn 167 (282)
T 3gcz_A 156 PGDTLLCDIGES 167 (282)
T ss_dssp CCSEEEECCCCC
T ss_pred CcCEEEecCccC
Confidence 399998866654
No 326
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.04 E-value=0.0025 Score=53.85 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=52.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
.++.|+..|... +++|..|||+.+|+++ +.+.|.|+.|...|++.+.+. ...|++|+.+..+.
T Consensus 153 ~~~~IL~~L~~~-~~~s~~eLA~~lglsk----sTv~r~L~~Le~~GlV~r~~r----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET-KGTGITELAKMLDKSE----KTLINKIAELKKFGILTQKGK----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH-TCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEETT----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEeCC----ccEEEECHHHHHHH
Confidence 355677777655 6899999999999977 999999999999999999752 46899999876443
No 327
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=95.96 E-value=0.018 Score=49.18 Aligned_cols=107 Identities=14% Similarity=-0.032 Sum_probs=59.5
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHh-hCCC----CCCeEEEEccCCC-CCC--Cc
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVIT-TAPV----YDGVTHVSGDMFH-TIP--NA 223 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~-~a~~----~~ri~~~~~d~~~-~~p--~~ 223 (276)
.++.+... +....+|||+|||.|.++..++++.+-..++++|+-.-+. .... ..++.....++.. +++ .+
T Consensus 64 ~ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 64 RWFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 34444433 5667799999999999999998876655666666521111 1111 1134444454422 344 39
Q ss_pred cEEEEcccccCCCcccc--ccC---HHHHHHhHhhC-CCCceEE
Q 046375 224 DALLLKWVLHNWSDEAC--ERT---ELEWKNIPEKG-GSPRYRI 261 (276)
Q Consensus 224 D~i~l~~vlh~~~~~~~--~rt---~~e~~~ll~~a-Gf~~~~~ 261 (276)
|+|++....+ -..... .++ .....++|..- |-=+.++
T Consensus 142 DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV 184 (277)
T 3evf_A 142 DTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV 184 (277)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 9999876665 222222 222 23445666665 5333344
No 328
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.96 E-value=0.004 Score=47.08 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=50.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l~ 79 (276)
++.++..|... ++.|..+||+.+++++ ..+.+.++.|...|++.+....++ -.-.|.+|+.+..+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~is~----~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQIDR----AAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45577777765 6899999999999977 999999999999999998752111 112488888776444
No 329
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=95.94 E-value=0.0087 Score=52.85 Aligned_cols=88 Identities=9% Similarity=0.089 Sum_probs=70.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC---------------------------CCCeEEEEccC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHVITTAPV---------------------------YDGVTHVSGDM 216 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~~~~a~~---------------------------~~ri~~~~~d~ 216 (276)
+..+||.+|||.....-++...+|+++++-+|+|++++.-++ .+++++++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 568999999999999999999999999999999998854322 27899999999
Q ss_pred CC-CC----------CC-ccEEEEcccccCCCccccccCHHHHHHhH
Q 046375 217 FH-TI----------PN-ADALLLKWVLHNWSDEACERTELEWKNIP 251 (276)
Q Consensus 217 ~~-~~----------p~-~D~i~l~~vlh~~~~~~~~rt~~e~~~ll 251 (276)
.+ ++ ++ ..++++--+|+++++++.......+.+.+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~ 223 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF 223 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC
Confidence 87 21 12 57888899999998888755555555555
No 330
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.86 E-value=0.003 Score=47.39 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.|+..|.. ++.++.|||+.+|+++ ..+.+.|+.|...|++....
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~----stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSE----SAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEE
Confidence 46778888875 7899999999999977 99999999999999998765
No 331
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.81 E-value=0.0039 Score=44.57 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=48.4
Q ss_pred HcChhhhhhhCCCCCCHHHH----HhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQI----ASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eL----A~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
++.++..|... ++.|..+| |+.+++++ ..+.++++.|...|++.+... .....|.+|+.+..+.
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~----~tvs~~l~~Le~~gli~r~~~--~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMST----ATFYDAKKFLIQEGFVKERQE--RGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCH----HHHHHHHHHHHHTTSEEEEEE--TTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHCCCEEEEec--CCceEEEECHHHHHHH
Confidence 45567777765 68999999 99999976 999999999999999998651 0013477777665333
No 332
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.78 E-value=0.012 Score=46.24 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.4
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|+++||+.+++|+ ..++++|..|...|+|.-... ..|.|.++..
T Consensus 43 ~~~s~~eIA~~~~i~~----~~l~kil~~L~~aGlv~s~rG---~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSE----HYLEQLIGPLRNAGIVKSIRG---AHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECS---TTCEEEECSC
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCeEEEecC---CCCceEecCC
Confidence 6899999999999998 999999999999999997762 2467887653
No 333
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.78 E-value=0.0046 Score=46.99 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.++..|... +++|..+||+.+++++ ..+.++++.|...|++.+..
T Consensus 38 ~~~~vL~~l~~~-~~~t~~eLa~~l~~~~----~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 38 PDVHVLKLIDEQ-RGLNLQDLGRQMCRDK----ALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHHHHHT-TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEeecc
Confidence 455677778776 6899999999999987 99999999999999999875
No 334
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.0055 Score=46.49 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=42.8
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
++.|..+||+.+++++ ..+.+.++.|...|++.+.. ..|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~is~----~tv~~~l~~Le~~Gli~r~~------~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAP----SSVFEEVSHLEEKGLVKKKE------DGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCCCh----HHHHHHHHHHHHCCCEEecC------CeEEEChhHHHH
Confidence 7899999999999977 99999999999999999876 679999876533
No 335
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.67 E-value=0.0053 Score=47.88 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=49.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCcccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l 78 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+.... ++. .+.+|+.+..+
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~--~DrR~~~l~LT~~G~~~ 113 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFIKP----QSANKILQDLLANGWIEKAPDP--THGRRILVTVTPSGLDK 113 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCG----GGHHHHHHHHHHTTSEEEEECC--SSSCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCcCeEecCCC--CcCCeeEeEECHhHHHH
Confidence 45677778766 6899999999999977 9999999999999999987521 111 37777766533
No 336
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.66 E-value=0.006 Score=45.87 Aligned_cols=65 Identities=11% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
.++.++..|... ++.|..+||+.+++++ ..+.+.++.|...|++.+.....+. .-.|.+|+.+..
T Consensus 34 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~----~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~ 99 (139)
T 3bja_A 34 VQFGVIQVLAKS-GKVSMSKLIENMGCVP----SNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEE 99 (139)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHCSSCC----TTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCh----hHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHH
Confidence 345677777765 6899999999999987 9999999999999999986411000 112667776543
No 337
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.63 E-value=0.009 Score=46.31 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|+++||+.+++|+ ..+.+++..|...|+|.... | .|.|.++..
T Consensus 29 ~~~~~~~iA~~~~i~~----~~l~kil~~L~~~Glv~s~r---G-~GGy~L~~~ 74 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNP----VVIRKIMSYLKQAGFVYVNR---G-PGGAGLLKD 74 (149)
T ss_dssp GGCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEEcc---C-CCceEeCCC
Confidence 6899999999999988 99999999999999998775 1 477888664
No 338
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.60 E-value=0.006 Score=47.18 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=46.8
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
|+..|.. ++.+..||++.+|+++ ..+.+.|+.|...|++++....++..-.|++|+.+..+
T Consensus 29 IL~~L~~--g~~~~~eLa~~lgis~----~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l 89 (146)
T 2f2e_A 29 IVRDAFE--GLTRFGEFQKSLGLAK----NILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRAL 89 (146)
T ss_dssp HHHHHHT--TCCSHHHHHHHHCCCH----HHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTT
T ss_pred HHHHHHh--CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHH
Confidence 5555654 7999999999999977 99999999999999999876211111268888876543
No 339
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.60 E-value=0.0046 Score=46.33 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=42.0
Q ss_pred HHcChhhhhhhCCCC-CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGP-ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~-~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|...++| +|+.|||+.++++. ..+.|.|+.|...|++.+..
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~----sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDV----STVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeeC
Confidence 355678888766456 99999999999976 99999999999999999864
No 340
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=95.56 E-value=0.0053 Score=51.88 Aligned_cols=77 Identities=21% Similarity=0.088 Sum_probs=46.2
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCe----EEEeechHHHhhCCCCCCe---EEEEc-cCCCCCC-
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIK----GINFDLPHVITTAPVYDGV---THVSG-DMFHTIP- 221 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~----~~~~Dlp~~~~~a~~~~ri---~~~~~-d~~~~~p- 221 (276)
..++-+.+ .+....+|||+||+.|.++...+++-+-.. +++.|+ .+.+.......+ .|..| ||++.-+
T Consensus 62 L~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~ 138 (269)
T 2px2_A 62 LRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSE 138 (269)
T ss_dssp HHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCC
Confidence 34555553 267789999999999999999998621112 233343 111111111334 56657 9998434
Q ss_pred CccEEEEcc
Q 046375 222 NADALLLKW 230 (276)
Q Consensus 222 ~~D~i~l~~ 230 (276)
.+|+|++=.
T Consensus 139 ~~DvVLSDM 147 (269)
T 2px2_A 139 ISDTLLCDI 147 (269)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEeCC
Confidence 499987533
No 341
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.55 E-value=0.01 Score=45.01 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=47.8
Q ss_pred hhhhhhhCCCCCCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCC-CeEecCccccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGE-PLYGLTHSSRWLV 79 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~-~~y~~t~~~~~l~ 79 (276)
|+..|.. ++.+..||++.+ |+++ ..+.+.|+.|...|+|++....++.+ -.|++|+.+..+.
T Consensus 31 IL~~L~~--g~~rf~eL~~~l~gIs~----~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 31 LFYHMID--GKKRFNEFRRICPSITQ----RMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHTT--SCBCHHHHHHHCTTSCH----HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHhc--CCcCHHHHHHHhcccCH----HHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 4455554 799999999999 9977 99999999999999999885210001 1589999887655
No 342
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.54 E-value=0.0056 Score=46.77 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=46.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~ 76 (276)
.++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~ 105 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGLDK----AAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC---------CCBEECHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHH
Confidence 355677778766 6899999999999977 999999999999999998741000 012366666554
No 343
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.54 E-value=0.0062 Score=46.16 Aligned_cols=64 Identities=9% Similarity=0.251 Sum_probs=48.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
++.++..|... ++.|..+||+.+++++ ..+.+.++.|...|++.+....++. .-.+.+|+.+..
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~~~----~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~ 103 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELALDT----GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSET 103 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTCCT----TTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHH
Confidence 45567777765 6899999999999987 8999999999999999987521000 114667776553
No 344
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.45 E-value=0.0043 Score=45.62 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=47.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCcccccc
Q 046375 11 RIPDIIHSHGGPITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRWL 78 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~l 78 (276)
.|+..|.. ++.+..|||+.+ ++++ ..+.+.|+.|...|++.+....++. .-.|++|+.+..+
T Consensus 26 ~IL~~L~~--~~~~~~eLa~~l~~is~----~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~ 89 (112)
T 1z7u_A 26 SLMDELFQ--GTKRNGELMRALDGITQ----RVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYAL 89 (112)
T ss_dssp HHHHHHHH--SCBCHHHHHHHSTTCCH----HHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHhccCCH----HHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHH
Confidence 45666765 789999999999 9976 9999999999999999987521000 0148888876533
No 345
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.44 E-value=0.0052 Score=47.18 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=45.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRW 77 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~ 77 (276)
.++.++..|...++++|..+||+.+++++ ..+.++++.|...|+|.+.... ++. .+.+|+.+..
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~----~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~LT~~G~~ 106 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDP----SQIVGLVDELEERGLVVRTLDP--SDRRNKLIAATEEGRR 106 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCH----HHHHHHHHHHHTTTSEEC-------------CEECHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeeCCc--cccchheeeECHHHHH
Confidence 34566777765445789999999999976 9999999999999999986510 111 2667776553
No 346
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.44 E-value=0.0032 Score=47.54 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=47.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~ 77 (276)
++.++..|... ++.|..+||+.+++++ ..+.+.++.|...|++.+.... ++. .|.+|+.+..
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~~~----~tvs~~l~~L~~~glv~r~~~~--~d~R~~~~~lT~~G~~ 104 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAMDA----ATIKGVVERLDKRGLIQRSADP--DDGRRLLVSLSPAGRA 104 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTCCH----HHHHHHHHHHHHTTCEEEEEET--TEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCC--CCCCeeeeEECHhHHH
Confidence 55677788665 6899999999999976 9999999999999999986410 011 3677776553
No 347
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.42 E-value=0.01 Score=45.18 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=48.3
Q ss_pred HHcChhhhhhh-CCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccc
Q 046375 8 IELRIPDIIHS-HGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRW 77 (276)
Q Consensus 8 ~~l~lf~~L~~-~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~ 77 (276)
.++.++..|.. . ++.|..+||+.+++++ ..+.++++.|...|++.+.....+ -.-.+.+|+.+..
T Consensus 36 ~~~~iL~~l~~~~-~~~~~~~la~~l~i~~----~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 102 (147)
T 2hr3_A 36 SQLVVLGAIDRLG-GDVTPSELAAAERMRS----SNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRR 102 (147)
T ss_dssp HHHHHHHHHHHTT-SCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHH
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHhCCCh----hhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHH
Confidence 45667778876 4 7899999999999976 999999999999999998751000 0113677776653
No 348
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=95.39 E-value=0.022 Score=49.09 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=61.7
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechHH-H--hhCCC---CCCeEEEEc-cCCC-CCCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPHV-I--TTAPV---YDGVTHVSG-DMFH-TIPN 222 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~~-~--~~a~~---~~ri~~~~~-d~~~-~~p~ 222 (276)
..++.+.+. +....+|||+||+.|.++..++....-.+++++|+-.. . +...+ -.-|.++.+ |++. +...
T Consensus 83 L~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 83 LRWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 445555555 56667999999999999998887766567999998221 1 11111 134889988 9866 2223
Q ss_pred ccEEEEcccccCCCcccc--ccCH---HHHHHhHhhC
Q 046375 223 ADALLLKWVLHNWSDEAC--ERTE---LEWKNIPEKG 254 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~--~rt~---~e~~~ll~~a 254 (276)
+|++++--- ---+.... +||. +-..+||...
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~ 196 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRG 196 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccC
Confidence 888776433 22222222 3543 3336677654
No 349
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.30 E-value=0.0092 Score=45.95 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=47.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCC-CCCCCeEecCcccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPS-DGGEPLYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~-~~~~~~y~~t~~~~~l 78 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|++.+.... |.-.-.+.+|+.+..+
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i~~----~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~ 110 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLMEQ----SRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRAL 110 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHH
Confidence 45567777765 6899999999999976 9999999999999999987510 0001237777766533
No 350
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.28 E-value=0.006 Score=47.26 Aligned_cols=65 Identities=6% Similarity=0.082 Sum_probs=46.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~ 77 (276)
++.++..|....+++|..+||+.+++++ ..+.++++.|...|++.+....++ -.-.+.+|+.+..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~----~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~ 114 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTN----GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLT 114 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCC----SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHH
Confidence 4567778832227899999999999987 999999999999999998751000 0112667776553
No 351
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.28 E-value=0.0077 Score=45.85 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=49.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWL 78 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l 78 (276)
.++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+..+
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 98 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSLPK----QTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAY 98 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHH
Confidence 355677777665 6899999999999977 999999999999999998652000 01137777776543
No 352
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.26 E-value=0.0069 Score=45.71 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=47.1
Q ss_pred HcChhhhhhhCCC-CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 9 ELRIPDIIHSHGG-PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~-~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
++.++..|...++ +.|..+||+.+++++ ..+.++++.|...|++.+....++. .-.+.+|+.+..
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~~~----~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~ 102 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSIKS----STATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANK 102 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCc----chHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHH
Confidence 4556677766422 799999999999976 9999999999999999987511000 114667776543
No 353
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.26 E-value=0.0071 Score=46.51 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=49.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l~ 79 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+..+.
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYLDS----ATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCCCc----ccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHH
Confidence 45677777765 6899999999999976 999999999999999998751000 011477888776444
No 354
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.25 E-value=0.0073 Score=46.27 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=47.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~ 76 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~~~----~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~ 105 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQMKR----QYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGE 105 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhH
Confidence 45567777765 6899999999999976 999999999999999998752100 011466776654
No 355
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.24 E-value=0.01 Score=44.98 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=40.1
Q ss_pred HcChhhhh-hhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDII-HSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L-~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.++..| ... ++.|..+||+.+++++ ..+.++++.|...|++.+..
T Consensus 39 ~~~iL~~l~~~~-~~~t~~~la~~l~~s~----~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHR-DSPTQRELAQSVGVEG----PTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCS-SCCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHhCCCh----hhHHHHHHHHHHCCCeeecC
Confidence 34566777 443 7899999999999977 99999999999999999875
No 356
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.24 E-value=0.0055 Score=46.53 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=48.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRWLV 79 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~l~ 79 (276)
+.|+..|.. ++.+..||++.+ |+++ ..+.+.|+.|...|+|.+....++. .-.|++|+.+..+.
T Consensus 38 l~IL~~L~~--g~~~~~eLa~~l~gis~----~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 38 VLILVALRD--GTHRFSDLRRXMGGVSE----XMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHHHGGG--CCEEHHHHHHHSTTCCH----HHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHhccCCH----HHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 446667764 799999999999 7977 9999999999999999987521000 11589998775443
No 357
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.23 E-value=0.025 Score=44.54 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=40.5
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|.++||+.+++++ ..+.+++..|...|+|.-... -.|.|+++..
T Consensus 27 ~~~s~~~IA~~~~is~----~~l~kil~~L~~aGlv~s~rG---~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHLNP----VMIRNILSVLHKHGYLTGTVG---KNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTSCG----GGTHHHHHHHHHTTSSEEECS---TTCEEECCSC
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeecC---CCCCeEecCC
Confidence 6899999999999998 999999999999999987751 2357998764
No 358
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.15 E-value=0.007 Score=45.51 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=40.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.++..|... ++.|..|||+.+++++ ..+.++++.|...|++.+..
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~s~----~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHVDK----GTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeec
Confidence 45567777765 7899999999999976 99999999999999999864
No 359
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.13 E-value=0.0088 Score=43.50 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=46.6
Q ss_pred hhhhhhhCCCCCCHHHHHhhc-CCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSI-DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRWLV 79 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~-~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~l~ 79 (276)
|+..|.. ++.+..||++.+ |+++ ..+.+.|+.|...|+|++....++. .-.|++|+.+..+.
T Consensus 30 IL~~L~~--~~~~~~eL~~~l~gis~----~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 30 IIFQINR--RIIRYGELKRAIPGISE----KMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp HHHHHTT--SCEEHHHHHHHSTTCCH----HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred HHHHHHh--CCcCHHHHHHHcccCCH----HHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence 5556664 799999999999 5976 9999999999999999987521000 11489999875433
No 360
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=95.11 E-value=0.015 Score=44.79 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=38.9
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++ |+++||+..++|+ ..+.++|..|...|+|.... | .|.|+++..
T Consensus 23 ~~-s~~~IA~~~~i~~----~~l~kIl~~L~~aGlv~s~r---G-~GGy~Lar~ 67 (145)
T 1xd7_A 23 KT-SSEIIADSVNTNP----VVVRRMISLLKKADILTSRA---G-VPGASLKKD 67 (145)
T ss_dssp CC-CHHHHHHHHTSCH----HHHHHHHHHHHHTTSEECCS---S-SSSCEESSC
T ss_pred CC-CHHHHHHHHCcCH----HHHHHHHHHHHHCCceEeec---C-CCCceecCC
Confidence 45 9999999999998 99999999999999998776 2 567887664
No 361
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.10 E-value=0.0054 Score=46.57 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=47.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+.....+. .-.+.+|+.+..
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~s~----~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~ 95 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKVDR----TTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKN 95 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHH
Confidence 34566777765 6899999999999976 9999999999999999987521000 113677776653
No 362
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.07 E-value=0.012 Score=44.61 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=46.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~ 76 (276)
++.++..|. . ++.|..+||+.+++++ ..+.++++.|...|++.+....++. .-.+.+|+.+.
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~ 101 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFVTQ----SAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGL 101 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCCCc----hhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHH
Confidence 455667777 4 7999999999999976 9999999999999999987511000 11366777654
No 363
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.04 E-value=0.0097 Score=42.65 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=41.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.|+..|... ++.|..|||+.+|+++ ..+.+.|+.|...|++.+..
T Consensus 22 ~~~il~~l~~~-~~~s~~ela~~l~is~----~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLER-GGMRVSEIARELDLSA----RFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEEe
Confidence 45677777654 7899999999999977 99999999999999999876
No 364
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.03 E-value=0.008 Score=45.21 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=47.8
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCcccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l 78 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+.... ++. .+.+|+.+..+
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~~~----~tvs~~l~~L~~~gli~r~~~~--~d~R~~~~~lT~~G~~~ 101 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSVDL----GALTRMLDRLVCKGWVERLPNP--NDKRGVLVKLTTGGAAI 101 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECT--TCSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCCCh----HHHHHHHHHHHHCCCEEecCCc--ccCceeEeEEChhHHHH
Confidence 45566777654 6899999999999976 9999999999999999986410 112 36777766533
No 365
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=95.00 E-value=0.015 Score=47.85 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=45.3
Q ss_pred CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 20 GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 20 ~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
+++.+..+||+.+++++ ..+.+.++.|...|++.+.. ...+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~----~tvs~~l~~Le~~GlV~r~~-----~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSP----PAVTEMMKKLLAEELLIKDK-----KAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET-----TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEEec-----CCCeEECHHHHHHH
Confidence 37899999999999977 99999999999999999988 47899999886444
No 366
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.00 E-value=0.0064 Score=46.13 Aligned_cols=66 Identities=9% Similarity=0.110 Sum_probs=48.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l~ 79 (276)
++.++..|... ++.|..|||+.+++++ ..+.++++.|...|+|++....++ -.-.+.+|+.+..+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~~~----~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFLDS----GTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 45566677655 7899999999999977 999999999999999998752100 011477777765433
No 367
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.96 E-value=0.0082 Score=47.17 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=47.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWL 78 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l 78 (276)
.++.++..|...++++|..|||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+..+
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~----~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~ 121 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQ----PSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPL 121 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCH----hhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHH
Confidence 35567777766336799999999999976 999999999999999998751100 01136777766533
No 368
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.94 E-value=0.011 Score=45.33 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=47.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceee--cCCCC-CCCCeEecCcccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAA--QHPSD-GGEPLYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~--~~~~~-~~~~~y~~t~~~~~l 78 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|++.+ ..... .-.-.+.+|+.+..+
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~ 110 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLIITG----SSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDL 110 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHH
Confidence 45667777765 6899999999999976 999999999999999998 43100 001147777776533
No 369
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.91 E-value=0.0084 Score=45.46 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=47.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~ 77 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+.... ++. .|.+|+.+..
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~s~----~tvs~~l~~L~~~glv~r~~~~--~d~r~~~~~lT~~G~~ 99 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGVAK----STVTGLVKRLEADGYLTRTPDP--ADRRAYFLVITRKGEE 99 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEET--TEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCc----hhHHHHHHHHHHCCCeeecCCC--CCCceEEEEECHHHHH
Confidence 45667777654 6899999999999977 9999999999999999987410 011 3667776653
No 370
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.89 E-value=0.0084 Score=44.31 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=42.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.|+..|.. ++.|..+||+.+|+++ ..+.+.|+.|...|++.+..
T Consensus 33 ~~~~il~~L~~--~~~s~~ela~~l~is~----stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 33 SRLMILTQLRN--GPLPVTDLAEAIGMEQ----SAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHHHHHHHH--CCCCHHHHHHHHSSCH----HHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 46778888887 6899999999999977 99999999999999998765
No 371
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.89 E-value=0.0056 Score=43.45 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=44.2
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcch-HHHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISY-IERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~-l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
++..|...+.+.|..|||+.+++++ .. +.++++.|...|++..+.. |.-.-.+.+|+.+..+
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~----~t~vs~~l~~Le~~Glv~~~~~-drR~~~~~LT~~G~~~ 82 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSE----KTFFMGLKDRLIRAGLVKEETL-SYRVKTLKLTEKGRRL 82 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCH----HHHHTTHHHHHHHTTSEEEEEE-ETTEEEEEECHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCc----hHHHHHHHHHHHHCCCeecCCC-CCCeEEEEECHhHHHH
Confidence 4445555423799999999999976 89 9999999999999995431 0001236777766533
No 372
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.88 E-value=0.0078 Score=45.68 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=48.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCC-CCCCeEecCccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSD-GGEPLYGLTHSSRW 77 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~-~~~~~y~~t~~~~~ 77 (276)
.++.++..|... +++|..|||+.+++++ ..+.++++.|...|++.+....+ .-.-.+.+|+.+..
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 103 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDT----PTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRK 103 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCH----hhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHH
Confidence 355667777765 7899999999999977 99999999999999999875110 01124677776653
No 373
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.84 E-value=0.0091 Score=46.28 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=46.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
+.++..|... +++|..|||+.+++++ ..+.++++.|...|+|.+....++. .-.+.+|+.+..
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 116 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKIDK----GTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKK 116 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHH
Confidence 4456667665 7899999999999977 9999999999999999987511000 013667776553
No 374
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.81 E-value=0.0079 Score=46.14 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=47.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWL 78 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l 78 (276)
.++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+..+
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 108 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSS----NTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQ 108 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEC---------CEEEECSHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHH
Confidence 355667777765 7899999999999977 999999999999999998751000 01137777766533
No 375
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.80 E-value=0.011 Score=44.52 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=48.4
Q ss_pred HHcChhhhhhhCC-CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCcccccc
Q 046375 8 IELRIPDIIHSHG-GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRWL 78 (276)
Q Consensus 8 ~~l~lf~~L~~~~-~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~l 78 (276)
.++.++..|...+ ++.|..+||+.+++++ ..+.++++.|...|++.+....++. .-.+.+|+.+..+
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~----~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTG----PTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCc----ccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 3456677777653 4899999999999977 9999999999999999987511000 1136677665533
No 376
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.79 E-value=0.022 Score=43.99 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=47.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l~ 79 (276)
++.++-.|...+++.+..|||+.+++++ ..+.++++.|...|+|.+.... ++. .+.+|+.|..+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~~~----~tvs~~v~~Le~~GlV~R~~~~--~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGIEQ----PSLVRTLDQLEEKGLITRHTSA--NDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECS--SCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCcCH----HHHHHHHHHHHhCCCeEeecCC--CCCcchhhhcCHHHHHHH
Confidence 3445666665445688899999999976 9999999999999999987521 122 377777765433
No 377
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.76 E-value=0.011 Score=45.09 Aligned_cols=64 Identities=8% Similarity=0.091 Sum_probs=47.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~ 77 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+....++ -.-.+.+|+.+..
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 108 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYLAC----STTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGER 108 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCc----hhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHH
Confidence 45567777665 6899999999999976 999999999999999998641000 0113667766553
No 378
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.75 E-value=0.012 Score=45.59 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=39.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+..
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~is~----~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAMDK----VAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeeec
Confidence 45567777765 7899999999999976 99999999999999999865
No 379
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.74 E-value=0.042 Score=42.17 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=40.0
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
++.|.++||+.+++|+ ..+.++|..|...|+|.-... ..|.|+++..
T Consensus 27 ~~~s~~~IA~~~~i~~----~~l~kil~~L~~aGlv~s~rG---~~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNLSD----LYLEQLVGPLRNAGLIRSVRG---AKGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECSS---SSSEEEESSC
T ss_pred CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCEEEecCC---CCCCeeecCC
Confidence 5899999999999988 999999999999999987651 2367888653
No 380
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=94.72 E-value=0.022 Score=40.57 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=48.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHh-hcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIAS-SIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~-~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
++.|+-.|... ++.|+.+||+ ..++ |...+.|=++.|...|+|+..+ +| +.+|+.+..+.
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~~-----~D-l~LT~~G~~~l 78 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKSG-----DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEET-----TE-EEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecCC-----CC-eeeCHhHHHHH
Confidence 45566777776 5999999999 9999 4589999999999999999444 34 88888876443
No 381
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.71 E-value=0.0071 Score=46.05 Aligned_cols=67 Identities=10% Similarity=0.210 Sum_probs=49.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCcccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRWLVT 80 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~l~~ 80 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+....++. .-.+.+|+.+..+..
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~~~----~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYLDS----GTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTCCH----HHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCc----CcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 45567777654 6899999999999976 9999999999999999987521000 113778887764443
No 382
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.69 E-value=0.011 Score=45.91 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=47.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~ 76 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+....++ -.-.|.+|+.+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~is~----~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~ 117 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVVEQ----STLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGR 117 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHH
Confidence 45677777765 6899999999999976 999999999999999998641000 011366666654
No 383
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=94.68 E-value=0.026 Score=38.21 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=42.9
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
++++.|+.. +..|+.+||.++|++. .-+.|.|.-|...|.|...+. .+-.|+.+
T Consensus 19 ~~i~~L~~~-~~~Ta~~IAkkLg~sK----~~vNr~LY~L~kkG~V~~~~~---~PP~W~~~ 72 (75)
T 1sfu_A 19 KEVLSLNTN-DYTTAISLSNRLKINK----KKINQQLYKLQKEDTVKMVPS---NPPKWFKN 72 (75)
T ss_dssp HHHHTSCTT-CEECHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEECC---SSCEEEEC
T ss_pred HHHHhCCCC-cchHHHHHHHHHCCCH----HHHHHHHHHHHHCCCEecCCC---CCCCccCC
Confidence 455677763 4599999999999965 899999999999999988872 34556554
No 384
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.66 E-value=0.016 Score=44.40 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=38.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceee
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAA 58 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~ 58 (276)
++.++..| .. ++.|..|||+.+++++ ..+.++++.|...|++.+
T Consensus 40 q~~iL~~l-~~-~~~t~~eLa~~l~~~~----~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 40 QSHVLNML-SI-EALTVGQITEKQGVNK----AAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHHH-HH-SCBCHHHHHHHHCSCS----SHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHH-Hc-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEe
Confidence 44577777 44 7999999999999987 999999999999999997
No 385
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.66 E-value=0.023 Score=43.95 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=44.7
Q ss_pred hhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccc
Q 046375 15 IIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWL 78 (276)
Q Consensus 15 ~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l 78 (276)
.|... ++.|..+||+.+|+++ ..+.+.|+.|...|+|.+.. ...+.+|+.+..+
T Consensus 48 ~l~~~-~~~~~~~la~~l~vs~----~tvs~~l~~Le~~Glv~r~~-----~~~~~lT~~g~~~ 101 (155)
T 2h09_A 48 LIREV-GEARQVDMAARLGVSQ----PTVAKMLKRLATMGLIEMIP-----WRGVFLTAEGEKL 101 (155)
T ss_dssp HHHHH-SCCCHHHHHHHHTSCH----HHHHHHHHHHHHTTCEEEET-----TTEEEECHHHHHH
T ss_pred HHHhC-CCcCHHHHHHHhCcCH----HHHHHHHHHHHHCCCEEEec-----CCceEEChhHHHH
Confidence 55543 6899999999999976 99999999999999999886 2568888876533
No 386
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.65 E-value=0.067 Score=42.79 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=49.2
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcC-CCCCCCcchHHHHHHHHhcCCceeecCCCC--C-CCCeEecCcccccc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSID-SPSSPEISYIERIMRLLGHKNIFAAQHPSD--G-GEPLYGLTHSSRWL 78 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~-~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~--~-~~~~y~~t~~~~~l 78 (276)
=.++.|+..|.. ++.|+.+||+.++ ++. ..+.+.|+.|...|+|+...+.- | -+..|++++.+..+
T Consensus 23 P~Rl~il~~L~~--~~~~~~~l~~~l~~~~~----~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 23 PLRWRITQLLIG--RSLTTRELAELLPDVAT----TTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp HHHHHHHHHTTT--SCEEHHHHHHHCTTBCH----HHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhcCCCH----HHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence 367889999986 7999999999996 865 78999999999999998654200 0 01247777755433
No 387
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.64 E-value=0.04 Score=47.55 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV 205 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~ 205 (276)
....|||++||+|..+.++++. +-+++++|+ |.+++.+++
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 4679999999999999998886 468999999 888877654
No 388
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.63 E-value=0.012 Score=45.31 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=47.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
.++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+....++. .-.|.+|+.+..
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~is~----~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~ 110 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLSTTK----SNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKE 110 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCH----HHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHH
Confidence 355677777765 6899999999999976 9999999999999999986411000 113666766553
No 389
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.58 E-value=0.019 Score=43.59 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=44.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCC-CCCCeEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSD-GGEPLYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~-~~~~~y~~t~~~~ 76 (276)
.++.++..|... + +|..|||+.+++++ ..+.++++.|...|+|.+....+ .-.-.+.+|+.+.
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~s~----~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~ 102 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNVSQ----AAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLAR 102 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEC----------CCEECGGGH
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCCCH----HHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHH
Confidence 456677888774 4 99999999999977 99999999999999999865100 0011366666554
No 390
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.58 E-value=0.0082 Score=43.05 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=44.7
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
-.++.|+..|... ++.++.|||+.+|+++ ..+.+.|+.|... ++..... |..-.|++++.
T Consensus 27 ~~Rl~IL~~l~~~-~~~~~~ela~~l~is~----stvs~hL~~L~~~-lv~~~~~--gr~~~y~l~~~ 86 (99)
T 2zkz_A 27 PMRLKIVNELYKH-KALNVTQIIQILKLPQ----STVSQHLCKMRGK-VLKRNRQ--GLEIYYSINNP 86 (99)
T ss_dssp HHHHHHHHHHHHH-SCEEHHHHHHHHTCCH----HHHHHHHHHHBTT-TBEEEEE--TTEEEEECCCH
T ss_pred HHHHHHHHHHHHC-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHH-hhhheEe--CcEEEEEEChH
Confidence 3567788554433 7899999999999977 9999999999999 9986651 11124666653
No 391
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.54 E-value=0.01 Score=46.16 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=48.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l 78 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+..+
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~~~----~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~ 120 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVMEQ----STTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKK 120 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHH
Confidence 45567777665 6899999999999976 999999999999999998752100 01136777766533
No 392
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.52 E-value=0.018 Score=38.99 Aligned_cols=57 Identities=14% Similarity=0.311 Sum_probs=49.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.+-.|++.|.+.|.|++..|||+.+|++. .-+...|..|-..|.+.-.. .-.|.++.
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdK----KeVdKaik~LKkEgkI~SPk-----RCyw~~~~ 76 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPK----RELNQVLYRMKKELKVSLTS-----PATWCLGG 76 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEE-----TTEEEESS
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHcCCccCCC-----CceeeCCC
Confidence 45678899998889999999999999954 89999999999999888776 47888763
No 393
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.49 E-value=0.012 Score=41.78 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=39.4
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccccc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWLV 79 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l~ 79 (276)
++|..+||+.+++++ ..+.++++.|...|++.... ++ .|++|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i~~----~tvs~~l~~Le~~Glv~~~~-----d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNSPH----SYVWLIIKKFEEAKMVECEL-----EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSSCH----HHHHHHHHHHHHTTSEEEEE-----ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCcCH----HHHHHHHHHHHHCcCccCCC-----CCCeEEEEEChhHHHHH
Confidence 399999999999976 99999999999999994333 23 488888776443
No 394
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.44 E-value=0.0077 Score=46.31 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=46.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~ 76 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+....++. .-.+.+|+.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~s~----~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~ 102 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEVKP----SAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGD 102 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHH
Confidence 44567777654 6899999999999977 9999999999999999987521000 01366666654
No 395
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.42 E-value=0.014 Score=44.57 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=34.3
Q ss_pred HcChhhhhhhCC-CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHG-GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~-~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.++..|...+ +++|..+||+.+++++ ..+.++++.|...|+|.+..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~----~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRG----ASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEeeC
Confidence 345666666532 6899999999999977 99999999999999999875
No 396
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.36 E-value=0.024 Score=43.44 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=42.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|++.|..+ ++.|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 6 ~d~~il~~L~~~-~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 6 IDLNIIEELKKD-SRLSMRELGRKIKLSP----PSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEe
Confidence 355788888875 7899999999999977 99999999999999998754
No 397
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.35 E-value=0.023 Score=43.76 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=42.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|..+ ++.|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 8 ~~~~iL~~L~~~-~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 8 IDRILVRELAAD-GRATLSELATRAGLSV----SAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEE
Confidence 456788888875 7899999999999987 99999999999999998754
No 398
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.31 E-value=0.011 Score=46.30 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=47.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~ 77 (276)
++.++..|... +++|..|||+.+++++ ..+.++++.|...|+|.+....++. .-.+.+|+.+..
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~is~----~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~ 111 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGVQP----SATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRD 111 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHH
Confidence 45567777665 6899999999999976 9999999999999999986411000 113677776653
No 399
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.29 E-value=0.01 Score=44.69 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=40.8
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.++..|... ++.|..+||+.+++++ ..+.++++.|...|++.+..
T Consensus 38 ~~~iL~~l~~~-~~~t~~ela~~l~~s~----~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 38 QWRVIRILRQQ-GEMESYQLANQACILR----PSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCH----hHHHHHHHHHHHCCCEEeec
Confidence 45667777765 6899999999999976 99999999999999999874
No 400
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=94.24 E-value=0.025 Score=43.53 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=42.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.|+..|..+ ++.|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 51 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRIPK----ATLSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTSCH----HHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCcEEEEE
Confidence 456788888875 6899999999999987 99999999999999998754
No 401
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.18 E-value=0.013 Score=44.55 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=48.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWLV 79 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l~ 79 (276)
.++.++..|... ++ |..+||+.+++++ ..+.++++.|...|++.+.... ++. .+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFVTQ----SAITAAVDKLEAKGLVRRIRDS--KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEET--TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCCCh----hHHHHHHHHHHHCCCEEeccCC--CCCceEEEEECHHHHHHH
Confidence 355677788775 45 9999999999977 9999999999999999987520 011 378888766433
No 402
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.17 E-value=0.016 Score=45.32 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=45.8
Q ss_pred HcChhhhhhhC-CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccccc
Q 046375 9 ELRIPDIIHSH-GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l~ 79 (276)
++.++..|... ++++|..+||+.+++++ ..+.++++.|...|+|.+... .++. .+.+|+.+..+.
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~--~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRA----PDITRLIDRLDDRGLVLRTRK--PENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---C----THHHHHHHHHHHTTSEEEEEE--TTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEeecCC--CCCCCeeEeEECHHHHHHH
Confidence 45566777653 25899999999999987 899999999999999998751 0111 367777665333
No 403
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.14 E-value=0.031 Score=39.95 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
++.+..+||+.++++. ..+.|.|..|...|+|.+... +++.+...+|+.++
T Consensus 35 ~~~s~~eLa~~l~l~~----stLsR~l~rLe~~GLV~r~~~-~D~R~~v~LT~~G~ 85 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPM----SVLRRVLTQLQAAGLADVSVE-ADGRGHASLTQEGA 85 (96)
T ss_dssp CCCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEEC-TTSCEEEEECHHHH
T ss_pred CCcCHHHHHHHhCCch----hhHHHHHHHHHHCCCEEeecC-CCCceeEEECHHHH
Confidence 6789999999999965 999999999999999999663 33445567777665
No 404
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=94.14 E-value=0.089 Score=42.87 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=38.1
Q ss_pred CCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---------CCCeEEEEccCC
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV---------YDGVTHVSGDMF 217 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~---------~~ri~~~~~d~~ 217 (276)
.+.++||+||+| +-++.+++ .++.+++.+|. ++..+.+++ .++|+++.||..
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~ 90 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG 90 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence 357899999985 44444555 56889999997 776666553 358999999954
No 405
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=94.08 E-value=0.01 Score=49.58 Aligned_cols=63 Identities=6% Similarity=0.183 Sum_probs=49.3
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceee-cCCCCCC-----CCeEecCcccc
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAA-QHPSDGG-----EPLYGLTHSSR 76 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~-~~~~~~~-----~~~y~~t~~~~ 76 (276)
--.++.|+..|.. +|.|..|||+.+|+++ ..+.+.|+.|...|++.. ... +. .-.|++++.+.
T Consensus 11 ~~~R~~IL~~L~~--g~~s~~ELa~~lglS~----stVs~hL~~Le~aGLV~~~~~~--gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 11 NKVRRDLLSHLTC--MECYFSLLSSKVSVSS----TAVAKHLKIMEREGVLQSYEKE--ERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp SHHHHHHHHHHTT--TTTCSSSSCTTCCCCH----HHHHHHHHHHHHTTSEEEEEEC--C-----CEEEEEECCCEE
T ss_pred CHHHHHHHHHHHh--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEeeec--CCCCCCccEEEEEccchh
Confidence 3456778888886 7999999999999977 899999999999999998 331 11 11388887654
No 406
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.00 E-value=0.018 Score=41.94 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=38.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
+.|+..|...|.+.|..+||+.+|++. ..+.+.|..|...|+|...
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~----~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKV----NDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCH----HHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEE
Confidence 456666643334899999999999976 9999999999999999887
No 407
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.99 E-value=0.013 Score=42.13 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=40.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.|+..|-+. +++|+.||++.++.++..+...+.++|+.|...|+|.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45677777654 6899999999998531113489999999999999999987
No 408
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=93.96 E-value=0.031 Score=43.68 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=42.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|..+ ++.|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 11 ~~~~il~~L~~~-~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 11 TDIKILQVLQEN-GRLTNVELSERVALSP----SPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEeeec
Confidence 355788888876 7899999999999987 99999999999999999754
No 409
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.93 E-value=0.016 Score=47.43 Aligned_cols=66 Identities=15% Similarity=-0.015 Sum_probs=49.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSRWLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~~l~ 79 (276)
++.++..|... +++|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+..+.
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i~~----stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVMHV----STAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTCCH----HHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 45566777655 6899999999999976 999999999999999999761000 011578888876444
No 410
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.87 E-value=0.03 Score=43.13 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=42.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|..+ ++.|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNTTR----QRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTSCH----HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEE
Confidence 456788888876 7899999999999977 99999999999999998754
No 411
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.81 E-value=0.034 Score=43.52 Aligned_cols=48 Identities=8% Similarity=0.225 Sum_probs=42.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|.+.|.++ +++|..+||+.+|+++ ..+.+-++.|...|++.+..
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~s~----~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGLST----TPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTCCH----HHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeeece
Confidence 456788999876 7999999999999987 99999999999999998654
No 412
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=93.80 E-value=0.06 Score=41.35 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=45.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSI-----DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~-----~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
+.-|++.|...+++.|++||.+.+ +++ ..-+.|.|+.|+..|++.+... +++..+|.++
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is----~aTVYR~L~~L~e~Glv~~~~~-~~~~~~Y~~~ 87 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMS----VATVYNNLRVFRESGLVKELTY-GDASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCC----HHHHHHHHHHHHHTTSEEEECC-TTSCCEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCC----hhhHHHHHHHHHHCCCEEEEee-CCCceEEECC
Confidence 445888887655799999999999 554 4899999999999999998863 1223457754
No 413
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.75 E-value=0.017 Score=45.86 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=45.9
Q ss_pred HcChhhhhhhCCCC--CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCC-CCCeEecCcccc
Q 046375 9 ELRIPDIIHSHGGP--ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDG-GEPLYGLTHSSR 76 (276)
Q Consensus 9 ~l~lf~~L~~~~~~--~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~-~~~~y~~t~~~~ 76 (276)
++.++..|...++| +|..+||+.+++++ ..+.++++.|...|+|.+....++ -.-.+.+|+.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~----~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~ 137 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISG----PSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGR 137 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCS----GGGSSHHHHHHHHTSEECCC-------CCBEECHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHH
Confidence 45567777764333 99999999999987 999999999999999998751000 001366666654
No 414
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=93.75 E-value=0.12 Score=44.53 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=45.5
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC--C--C-CCeEEEEc-cCCCCCC-CccEEEEccccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDLPH-VITTAP--V--Y-DGVTHVSG-DMFHTIP-NADALLLKWVLH 233 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dlp~-~~~~a~--~--~-~ri~~~~~-d~~~~~p-~~D~i~l~~vlh 233 (276)
+....++||+||+.|.++..++++.+-..++++|+.. ...... + . +-+.+..+ |++.-.+ .+|+|++-...+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 5677899999999999999999877666678888722 111111 1 2 22334433 5444122 499988855444
No 415
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.74 E-value=0.018 Score=39.57 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=41.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.++..|... ++.|+.||++.++..+..+...+.++|+.|...|+|.+..
T Consensus 10 ~e~~vL~~L~~~-~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWKH-SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHTS-SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 456678888764 7999999999997311112389999999999999999876
No 416
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.72 E-value=0.032 Score=45.56 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=51.7
Q ss_pred HhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCC---CCCCeEecCcccc
Q 046375 3 ALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSD---GGEPLYGLTHSSR 76 (276)
Q Consensus 3 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~---~~~~~y~~t~~~~ 76 (276)
+|.--.++.|+..|.. +|.|..|||+.+|+++ ..+.+.|+.|...|+|....... +..-.|++|+...
T Consensus 11 aL~~~~rl~IL~~L~~--~~~s~~eLa~~l~is~----stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK--RPYFVSELSRELGVGQ----KAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 3444467788888876 7999999999999977 99999999999999999865210 1122578777543
No 417
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=93.67 E-value=0.034 Score=49.75 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=48.9
Q ss_pred hHhHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC----eEecCcccc
Q 046375 2 LALKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP----LYGLTHSSR 76 (276)
Q Consensus 2 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~----~y~~t~~~~ 76 (276)
++++...+..|++.|. + +++|..|||+.+|+++ ..+.++++.|...|++.+.+..+.+.| .|++++...
T Consensus 15 ~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gls~----~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 15 KSVRAENISRILKRIM-K-SPVSRVELAEELGLTK----TTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp -------CCCSHHHHH-H-SCBCHHHHHHHHTCCH----HHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred hhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 4566667788999999 6 8999999999999977 999999999999999998753211112 377776544
No 418
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.58 E-value=0.039 Score=43.67 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=42.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|..+ +++|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~----~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKKPE----STIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEeec
Confidence 456788889876 7899999999999987 99999999999999998654
No 419
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.55 E-value=0.034 Score=39.74 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.|..|||+.+|+++ ..+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~is~----~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSK----TTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEeec
Confidence 7899999999999977 99999999999999999876
No 420
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.55 E-value=0.033 Score=43.00 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|..+ ++.|..|||+++|+++ ..+.+.++.|...|++.+..
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSP----ETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCH----HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHcCCcceEE
Confidence 356788888876 7899999999999987 99999999999999999754
No 421
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=93.53 E-value=0.031 Score=43.14 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|+..|..+ ++.|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 8 ~~~~il~~L~~~-~~~s~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 8 IDKKIIKILQND-GKAPLREISKITGLAE----STIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCH----HHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEE
Confidence 356788888876 7899999999999987 99999999999999998754
No 422
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=93.42 E-value=0.031 Score=45.19 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=35.7
Q ss_pred hhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 15 IIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 15 ~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+.+.|.|.|..|||+.+|+++ ..+.+.|+.|...|++.+..
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~----~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITP----RGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEECC-
T ss_pred HHHHhCCCCCHHHHHHHcCCCc----HHHHHHHHHHHHCCCEEecC
Confidence 3444446899999999999976 78999999999999999876
No 423
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=93.40 E-value=0.031 Score=42.36 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=38.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 11 RIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 11 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++..|....++.|..|||+.+|+++ ..+.++++.|...|++.+..
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~~~----stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKISK----GNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 34566642227899999999999977 99999999999999999864
No 424
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=93.39 E-value=0.045 Score=43.96 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=46.8
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCc-eeecCCCCCCCCeEecCccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNI-FAAQHPSDGGEPLYGLTHSS 75 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gl-l~~~~~~~~~~~~y~~t~~~ 75 (276)
...|.+.|...++++|..|||+.+|+++ +.+.+-++.|...|+ +.... +.|.+++..
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~----~Ti~rdi~~L~~~G~~I~~~~------~Gy~l~~~~ 80 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSR----QVIVQDIAYLRSLGYNIVATP------RGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCH----HHHHHHHHHHHHHTCCCEEET------TEEECCTTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEEEEC------CEEEECCcc
Confidence 4568888876446799999999999977 999999999999999 76644 678887643
No 425
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=93.35 E-value=0.011 Score=43.71 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcC----CCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSID----SPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~----~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.++..|... ++.|..|||+.++ +++ ..+.++|+.|...|+|.+..
T Consensus 11 ~~~~vL~~l~~~-~~~t~~ela~~l~~~~~~s~----~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 11 AEWEVMNIIWMK-KYASANNIIEEIQMQKDWSP----KTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHHhccCCCcH----hhHHHHHHHHHHCCCeEEEe
Confidence 355677777654 7899999999999 545 89999999999999999886
No 426
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=93.20 E-value=0.046 Score=43.31 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=42.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.+..|...|..+ ++.|..|||+++|+++ ..+.+.++.|...|++.+..
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~----~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAE----STIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCeEeee
Confidence 456788889876 7899999999999987 99999999999999998754
No 427
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.18 E-value=0.051 Score=43.91 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=43.2
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 5 KCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 5 ~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
....+..|+..|.. ++.|..|||+.+|+++ ..+.+.++.|...|++.+.
T Consensus 18 ~d~~~~~IL~~L~~--~~~s~~eLA~~lglS~----stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN--KEMTISQLSEILGKTP----QTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT--CCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHc--CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEE
Confidence 33456778899984 7999999999999987 9999999999999999987
No 428
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.08 E-value=0.035 Score=42.07 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=41.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+..|...|... ++.|..|||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 6 ~~~il~~L~~~-~~~~~~ela~~lg~s~----~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKD-ARTPFTEIAKKLGISE----TAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCH----HHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEeccc
Confidence 45677888765 6899999999999977 99999999999999998665
No 429
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=93.05 E-value=0.039 Score=34.94 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=41.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeec
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQ 59 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~ 59 (276)
+..|++.|..+||-+.++..|++.|++. .-+..+|+-|.+.|++...
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~k----deV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEK----QEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCH----HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCH----HHHHHHHHHHHHCCCeecc
Confidence 4567889998888899999999999976 8999999999999998753
No 430
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=92.82 E-value=0.036 Score=42.60 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=37.6
Q ss_pred cChhhhhhhC----CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 10 LRIPDIIHSH----GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 10 l~lf~~L~~~----~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
+.++..|... ++++|..|||+.+++++ ..+.++++.|...|+|.+.++.|.-.-...+|+.|.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~----~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~ 102 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGVER----TTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGR 102 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTCCH----HHHHHHHHHHHHTTSBC-----------CCBCHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHH
Confidence 3445555432 24689999999999976 999999999999999955442100011355666554
No 431
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=92.81 E-value=0.13 Score=44.86 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=57.5
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC-CCeEEEeechHHHhhCCC---------CCCeEEEEccCCCC----C------CC-
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP-HIKGINFDLPHVITTAPV---------YDGVTHVSGDMFHT----I------PN- 222 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p-~l~~~~~Dlp~~~~~a~~---------~~ri~~~~~d~~~~----~------p~- 222 (276)
+..+||++|||-=...-++. .| +++++-+|.|.+++..++ .++..+++.|+.+. + ++
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 56789999999888866665 24 478999999999865432 57899999999862 1 11
Q ss_pred ccEEEEcccccCCCcccc
Q 046375 223 ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 223 ~D~i~l~~vlh~~~~~~~ 240 (276)
.-++++--++|++++++.
T Consensus 180 Pt~~i~Egvl~Yl~~~~~ 197 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQ 197 (310)
T ss_dssp CEEEEECSCGGGSCHHHH
T ss_pred CEEEEEechHhhCCHHHH
Confidence 457788899999998876
No 432
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.74 E-value=0.041 Score=44.06 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=50.1
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCC-CCeEecCccccccc
Q 046375 8 IELRIPDIIHSH-GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGG-EPLYGLTHSSRWLV 79 (276)
Q Consensus 8 ~~l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~-~~~y~~t~~~~~l~ 79 (276)
.++.++..|... ++++|..+||+.+++++ ..+.++++.|...|+|.+....++. .-.+.+|+.+..+.
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~is~----~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGTSK----QNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 355666777642 26899999999999976 9999999999999999987521000 11478888876443
No 433
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.72 E-value=0.069 Score=40.24 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=47.0
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEec
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSI-----DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~-----~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~ 71 (276)
+-.+.-|++.|...+++.|++||.+.+ +++. .-+.|.|+.|+..|++.+... +++..+|.+
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~----~TVYR~L~~L~e~Glv~~~~~-~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGL----TTVYRTLQSMASSGLVDTLHT-DTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCH----HHHHHHHHHHHTTTSEEEEEC-TTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH----hhHHHHHHHHHHCCCEEEEEe-CCCceEEEe
Confidence 445667888997655799999999998 5644 899999999999999998763 122335664
No 434
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.65 E-value=0.029 Score=43.01 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=44.6
Q ss_pred Chhhhhhh-CCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCcccccc
Q 046375 11 RIPDIIHS-HGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWL 78 (276)
Q Consensus 11 ~lf~~L~~-~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l 78 (276)
.++..|.. .++++|..+||+.+++++ ..+.++++-|...|+|++.... ++. .+.+|+.++.+
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l~~~~----~tvs~~v~~Le~~Glv~r~~~~--~DrR~~~l~LT~~G~~~ 104 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERLMVHP----TSVTNTVDRLVRSGLVAKRPNP--NDGRGTLATITDKGREV 104 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEECC------CEEEEECHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCH----HHHHHHHHHHHhCCCEEEeecC--CcCceeEEEECHHHHHH
Confidence 34455532 126799999999999976 9999999999999999987621 112 26777766533
No 435
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=92.45 E-value=0.094 Score=39.74 Aligned_cols=60 Identities=13% Similarity=0.358 Sum_probs=45.4
Q ss_pred HHcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 8 IELRIPDIIHSHG-GPITSSQIASSI-----DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 8 ~~l~lf~~L~~~~-~~~t~~eLA~~~-----~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
.+.-|++.|.... ++.|++||.+.+ +++ ..-+.|-|+.|+..|++.+... +++..+|.++
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is----~aTVYR~L~~L~e~Glv~~~~~-~~~~~~Y~~~ 84 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVG----LATVYRVLTQFEAAGLVVRHNF-DGGHAVFELA 84 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCC----HHHHHHHHHHHHHHTSEEEECS-SSSSCEEEES
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCC----HHHHHHHHHHHHHCCcEEEEEe-CCCceEEEeC
Confidence 3455788887654 689999999998 554 4899999999999999998762 1233567753
No 436
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=92.15 E-value=0.1 Score=39.81 Aligned_cols=67 Identities=7% Similarity=0.122 Sum_probs=48.2
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
+..+.-|++.|....++.|++||.+.+.- .|.++..-+.|-|+.|+..|++.+... +++..+|.+..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~-~~g~~~Y~~~~ 80 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRT-AEGESVYRRCS 80 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEEC-TTSCEEEECCS
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEc-CCCceEEEECC
Confidence 34566788888765579999999998831 112245899999999999999998762 22344677643
No 437
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=92.14 E-value=0.22 Score=31.50 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=41.8
Q ss_pred hhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 14 DIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 14 ~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
..|...-.++|+-|+|+..|++- ...+.-|+.|.+.|-|.+.. .+|++.|
T Consensus 10 all~s~~QGMTaGEVAA~f~w~L----e~ar~aLeqLf~~G~LRKRs------SRYrlkp 59 (68)
T 3i71_A 10 ALLTSVRQGMTAGEVAAHFGWPL----EKARNALEQLFSAGTLRKRS------SRYRLKP 59 (68)
T ss_dssp HHHHHCTTCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC------CEEEECC
T ss_pred HHHHHHhccccHHHHHHHhCCcH----HHHHHHHHHHHhcchhhhhc------cccccCc
Confidence 34443226799999999999976 78889999999999999998 8999876
No 438
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=91.96 E-value=0.17 Score=36.07 Aligned_cols=52 Identities=10% Similarity=0.250 Sum_probs=40.6
Q ss_pred hHHHHHcChhh-hhhhCCCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 4 LKCAIELRIPD-IIHSHGGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 4 l~~a~~l~lf~-~L~~~~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+.-.++..|.+ .+.. |..+ |..+||+.+|++. ..+.+.|+.|...|++....
T Consensus 16 l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~vSr----~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 16 VATHFRTLIKSGELAP-GDTLPSVADIRAQFGVAA----KTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSSCT----THHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEeC
Confidence 34445555665 3443 2455 9999999999987 89999999999999999876
No 439
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=91.77 E-value=0.11 Score=40.19 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=57.9
Q ss_pred HcChhhhhhhC-CCCCCHHHHHhhcC-CCCCCCcchHHHHHHHHhcCCceeecCCCCC--CCC----eEecCcccc-ccc
Q 046375 9 ELRIPDIIHSH-GGPITSSQIASSID-SPSSPEISYIERIMRLLGHKNIFAAQHPSDG--GEP----LYGLTHSSR-WLV 79 (276)
Q Consensus 9 ~l~lf~~L~~~-~~~~t~~eLA~~~~-~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~--~~~----~y~~t~~~~-~l~ 79 (276)
++.|+..|-.+ .+..|++||++.++ ++. ..+.+.|+.|+..|+|.+....++ +.| .|.+|+.++ .|.
T Consensus 31 R~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~----aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~ 106 (151)
T 3u1d_A 31 RLDVLHQILAQPDGVLSVEELLYRNPDETE----ANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLR 106 (151)
T ss_dssp HHHHHHHHHHSTTSCBCHHHHHHHCTTSCH----HHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHhcCCCCH----HHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHH
Confidence 45567777543 24589999999998 865 899999999999999996532110 112 589999886 443
Q ss_pred cCCCCCChhhHHHhhcChhhhhhhhhHHHhHh
Q 046375 80 TGSDSNQLGPVFLVENHPYMVNSWHFLSQCVK 111 (276)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 111 (276)
... .+. ....|..|.+.+.
T Consensus 107 ~y~---~la----------~~~alr~l~~~v~ 125 (151)
T 3u1d_A 107 AVS---MYE----------EAAVWRSVYEQME 125 (151)
T ss_dssp HTT---CST----------HHHHTHHHHHHSC
T ss_pred HhH---HHh----------HHHHHHHHHHHhh
Confidence 211 111 1257788888774
No 440
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=91.51 E-value=0.058 Score=40.19 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=47.1
Q ss_pred HcChhhhhhhC-CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCC-CCCCeEecCcccccc
Q 046375 9 ELRIPDIIHSH-GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSD-GGEPLYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~-~~~~~y~~t~~~~~l 78 (276)
++.++..|... +++.|..|||+.+++++ ..+.++++.|...|++.+....+ .-.-.+.+|+.+..+
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~----~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~ 106 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQ----PQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKK 106 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHH----HHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHH
Confidence 34456666543 25799999999999976 99999999999999999864110 011236777776533
No 441
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.50 E-value=0.057 Score=44.75 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
++.|..++|+.+++++ +.+.+.++.|...|++.+... .....+++|+.+..+.
T Consensus 26 ~~~s~s~aA~~L~isq----~avSr~I~~LE~~~L~~R~~~--~R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGISQ----QSASRIIIDLEKNGYITRTVT--KRGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEEEE--TTEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEEEc--CCeEEEEECHHHHHHH
Confidence 4589999999999976 999999999999999999820 0015688888876444
No 442
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.21 E-value=0.1 Score=36.73 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=40.1
Q ss_pred HcChhhhhhhCC-CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHG-GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~-~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++.|+..|...+ .+++..|||.+++++. .-+.++|+.|...|++.+..
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~----~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNLPL----TEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEec
Confidence 455777787631 4799999999999966 99999999999999999654
No 443
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.18 E-value=0.16 Score=38.03 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 23 ITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 23 ~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.|.++||+.+|+++ ..+.+.++.|...|++.+..
T Consensus 52 ps~~~LA~~l~~s~----~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 52 PTPAELAERMTVSA----AECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp CCHHHHHHTSSSCH----HHHHHHHHHHHHTTSSEECC
T ss_pred CCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 79999999999977 99999999999999999976
No 444
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=91.09 E-value=0.16 Score=45.64 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=44.3
Q ss_pred hHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 4 LKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 4 l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++..-+..|++.|..+ +++|..|||+.+|+++ ..+.++++.|...|++.+.+
T Consensus 13 ~r~~n~~~il~~l~~~-~~~sr~~la~~~~ls~----~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAP----ASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHHSS-CSCCHHHHHHHTTCCH----HHHHHHHHHHHHHTSEEEC-
T ss_pred HHHhHHHHHHHHHHHc-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCcEEeec
Confidence 3444556689999876 7999999999999977 99999999999999999865
No 445
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=91.08 E-value=0.11 Score=38.36 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=54.5
Q ss_pred hHhHHHHHcChhhhhhhCCCCCCHHHHHhhcC------CCCCCCcchHHHHHHHHhcCCceeecCC-CCCCCC--eEecC
Q 046375 2 LALKCAIELRIPDIIHSHGGPITSSQIASSID------SPSSPEISYIERIMRLLGHKNIFAAQHP-SDGGEP--LYGLT 72 (276)
Q Consensus 2 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~------~~~~~~~~~l~~lL~~L~~~Gll~~~~~-~~~~~~--~y~~t 72 (276)
+.++-.+++-|+..|.. +|.+--||++.+. +++ ..+...|+.|...|+++.... .++++. .|++|
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i~~----gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQALPQ----GSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCCCT----THHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCCCc----chHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 44556677888889987 7999999999886 766 899999999999999987641 111122 59999
Q ss_pred cccc-ccc
Q 046375 73 HSSR-WLV 79 (276)
Q Consensus 73 ~~~~-~l~ 79 (276)
+.++ .+.
T Consensus 83 ~~G~~~l~ 90 (117)
T 3elk_A 83 DAGKKFLC 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 9886 444
No 446
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=90.94 E-value=2.4 Score=37.11 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=78.5
Q ss_pred CCceEEEeeCCccHHHHHHHHH-CCCCeEEEeechHHHhhCC-----------------------------CCCCeEEEE
Q 046375 164 SLKSLVDVAGGIGGLISEIVKS-YPHIKGINFDLPHVITTAP-----------------------------VYDGVTHVS 213 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~-~p~l~~~~~Dlp~~~~~a~-----------------------------~~~ri~~~~ 213 (276)
+..+||-+|||.=...-++... .++++++=+|+|++++.=+ ..++.++++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999999875 3688899999999885310 157899999
Q ss_pred ccCCC--C---------CC-C-ccEEEEcccccCCCcccc----------------------------------------
Q 046375 214 GDMFH--T---------IP-N-ADALLLKWVLHNWSDEAC---------------------------------------- 240 (276)
Q Consensus 214 ~d~~~--~---------~p-~-~D~i~l~~vlh~~~~~~~---------------------------------------- 240 (276)
.|+.+ . ++ + .-++++=-+|.+++++++
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i~p~d~fg~~M~~~l~~~g 249 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQ 249 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEECCTTSHHHHHHHHHHHTTT
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEeccCCCCHHHHHHHHHHHHhC
Confidence 99976 1 22 2 457777788889988776
Q ss_pred --------ccCHHHHHHhHhhCCCCceEEEec
Q 046375 241 --------ERTELEWKNIPEKGGSPRYRIIKI 264 (276)
Q Consensus 241 --------~rt~~e~~~ll~~aGf~~~~~~~~ 264 (276)
-.+.++..+.|.++||+.++..++
T Consensus 250 ~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 250 CDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp CCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred CCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 036788899999999998877654
No 447
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.68 E-value=0.11 Score=39.42 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.|+..|-...+++|..||++.++.....+...+.++|+-|...|+|.+..
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 46677888876226899999999998311113489999999999999999987
No 448
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.66 E-value=0.089 Score=44.34 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=48.1
Q ss_pred HcChhhhhhhCCC-CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCcccccc
Q 046375 9 ELRIPDIIHSHGG-PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRWL 78 (276)
Q Consensus 9 ~l~lf~~L~~~~~-~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~l 78 (276)
++.++..|...++ ++|..|||+.+++++ ..+.++++-|...|+|.+.... ++. ...+|+.+..+
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i~~----~tvt~~v~rLe~~GlV~R~~~~--~DrR~~~i~LT~~G~~~ 227 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHHKY----PQTVRALNNLKKQGYLIKERST--EDERKILIHMDDAQQDH 227 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSSCH----HHHHHHHHHHHHHTSSEEEECS--SSTTCEEEECCHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCCCh----hhHHHHHHHHHHCCCEEeeCCC--CCCCeEEEEECHHHHHH
Confidence 4556777766432 599999999999976 9999999999999999997621 112 36677766543
No 449
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=90.65 E-value=0.27 Score=45.99 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=49.7
Q ss_pred HHHHhccccCCCCCceEEEeeCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhhCCC------CCCeEE
Q 046375 152 REILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSY-------------PHIKGINFDL-PHVITTAPV------YDGVTH 211 (276)
Q Consensus 152 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~l~~~~~Dl-p~~~~~a~~------~~ri~~ 211 (276)
..+++.++ .....+|+|-.||+|.|+....+.. ......++|+ |.+...++. .+.-.+
T Consensus 207 ~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 207 RFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 34444444 3455699999999999998876542 1346899998 766665543 233456
Q ss_pred EEccCCC-CC----C--CccEEEE
Q 046375 212 VSGDMFH-TI----P--NADALLL 228 (276)
Q Consensus 212 ~~~d~~~-~~----p--~~D~i~l 228 (276)
..+|.+. |. + .||+|+.
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~ 308 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILT 308 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEE
T ss_pred cccccccCchhhhcccccceEEEe
Confidence 7788775 31 1 3899886
No 450
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=90.36 E-value=0.19 Score=43.05 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=47.2
Q ss_pred CCCceEEEeeCCccHHHHHHHHHC-----CCCeEEEeec----hH-----------------------HHhhCCC-----
Q 046375 163 DSLKSLVDVAGGIGGLISEIVKSY-----PHIKGINFDL----PH-----------------------VITTAPV----- 205 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~~~~-----p~l~~~~~Dl----p~-----------------------~~~~a~~----- 205 (276)
..+..||++|+..|.-++.+++.. |+-+++++|. |+ .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 357899999999999998877654 5778999994 21 1111222
Q ss_pred ---CCCeEEEEccCCC--C-CC--CccEEEEc
Q 046375 206 ---YDGVTHVSGDMFH--T-IP--NADALLLK 229 (276)
Q Consensus 206 ---~~ri~~~~~d~~~--~-~p--~~D~i~l~ 229 (276)
.++|+++.||+.+ | ++ .+|++++=
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfID 216 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMD 216 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEEC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEc
Confidence 2899999999976 2 43 27877763
No 451
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=90.19 E-value=0.08 Score=39.09 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=42.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
.++.++..|-.. +|+|..|||+.++.+...+...+.++|+-|...|+|.+..
T Consensus 11 ~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 466778888776 6899999999997521113489999999999999999987
No 452
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=90.12 E-value=0.21 Score=38.52 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=45.8
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSI-----DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~-----~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
-.+.-|++.|...+++.|++||.+.+ +++. .-+.|.|+.|+..|++.+... +++..+|.++
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~----aTVYR~L~~L~e~Glv~~~~~-~~~~~~Y~~~ 92 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSI----SSVYRILNFLEKENFISVLET-SKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCH----HHHHHHHHHHHHTTSEEEEEE-TTTEEEEEES
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCH----hhHHHHHHHHHHCCcEEEEEe-CCCceEEEec
Confidence 34556888887655799999999998 5544 899999999999999998752 1122357653
No 453
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=90.11 E-value=0.89 Score=40.71 Aligned_cols=101 Identities=11% Similarity=0.213 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCceEEEeeCCccHHHHHHHHH-------CCCCeEEEeechHHHhhC-
Q 046375 132 DQQFNKIFNEGMACNAKFLTREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKS-------YPHIKGINFDLPHVITTA- 203 (276)
Q Consensus 132 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-------~p~l~~~~~Dlp~~~~~a- 203 (276)
.|+....|-+.+..+-. +. ..... .+.+.+|+++|+|.|.++.-+++. +..+++.++|....+...
T Consensus 54 apeis~~FGe~la~~~~---~~-w~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q 127 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSA---SV-WKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQ 127 (387)
T ss_dssp HHHHCHHHHHHHHHHHH---HH-HHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH---HH-HHHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHH
Confidence 36777778777654322 11 12222 455678999999999999888765 235588999983333221
Q ss_pred ----CCCCCeEEEEccCCCCCCC-ccEEEEcccccCCCcccc
Q 046375 204 ----PVYDGVTHVSGDMFHTIPN-ADALLLKWVLHNWSDEAC 240 (276)
Q Consensus 204 ----~~~~ri~~~~~d~~~~~p~-~D~i~l~~vlh~~~~~~~ 240 (276)
...++|+.. +-++.+|. .=+++.+-++-.+|-+..
T Consensus 128 ~~~L~~~~~v~W~--~~l~~lp~~~~~viANE~fDAlPv~~~ 167 (387)
T 1zkd_A 128 QTLLAGIRNIHWH--DSFEDVPEGPAVILANEYFDVLPIHQA 167 (387)
T ss_dssp HHHSTTCSSEEEE--SSGGGSCCSSEEEEEESSGGGSCCEEE
T ss_pred HHHhcCCCCeEEe--CChhhcCCCCeEEEeccccccCceEEE
Confidence 112245443 22223443 334455555555554443
No 454
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=90.01 E-value=0.095 Score=43.43 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=40.4
Q ss_pred CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 24 TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 24 t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
+..+||+.+++++ ..+.++|+.|...|++.+.. ...+.+|+.+..+.
T Consensus 26 ~~~~La~~l~vs~----~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQSG----PTVSQTVSRMERDGLLRVAG-----DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECT-----TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEeC-----CccEEECHHHHHHH
Confidence 4499999999976 89999999999999999987 35799999886443
No 455
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=89.90 E-value=0.19 Score=37.06 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=50.8
Q ss_pred HhHHHHHcChhhhhhhCCCCCCHHHHHhhc------CCCCCCCcchHHHHHHHHhcCCceeecCC-CCCCCC--eEecCc
Q 046375 3 ALKCAIELRIPDIIHSHGGPITSSQIASSI------DSPSSPEISYIERIMRLLGHKNIFAAQHP-SDGGEP--LYGLTH 73 (276)
Q Consensus 3 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~------~~~~~~~~~~l~~lL~~L~~~Gll~~~~~-~~~~~~--~y~~t~ 73 (276)
.++-.+++-|+..|.. +|.+--||++.+ ++++ ..+...|+.|...|+++.... +++++. .|++|+
T Consensus 7 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~----gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEVVE----GTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTCCH----HHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCc----cHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 3455567778888887 799999999998 5655 899999999999999988631 111222 488998
Q ss_pred ccc
Q 046375 74 SSR 76 (276)
Q Consensus 74 ~~~ 76 (276)
.++
T Consensus 81 ~G~ 83 (117)
T 4esf_A 81 AGR 83 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 456
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=89.89 E-value=1.4 Score=38.07 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=64.5
Q ss_pred CCceEEEeeCCccHHHHH----HHHHCCCCe--EEEeec---------hH----HH----hhCCC--CCCe--EEEEccC
Q 046375 164 SLKSLVDVAGGIGGLISE----IVKSYPHIK--GINFDL---------PH----VI----TTAPV--YDGV--THVSGDM 216 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~----l~~~~p~l~--~~~~Dl---------p~----~~----~~a~~--~~ri--~~~~~d~ 216 (276)
..-+|+|+|=|+|..... +.+..|+.+ ++-+|- |+ .. +.... .++| .+.-||.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 457899999999997644 335578865 455553 11 01 01111 3444 5667888
Q ss_pred CC---CCC--CccEEEEcccccCCCcccc------------------------ccCHHHHHHhHhhCCCCceEEEecCCc
Q 046375 217 FH---TIP--NADALLLKWVLHNWSDEAC------------------------ERTELEWKNIPEKGGSPRYRIIKIPAL 267 (276)
Q Consensus 217 ~~---~~p--~~D~i~l~~vlh~~~~~~~------------------------~rt~~e~~~ll~~aGf~~~~~~~~~~~ 267 (276)
.+ .++ .+|++++= -+++..+ --....+++-|.++||++.++...++-
T Consensus 176 ~~~l~~l~~~~~Da~flD----gFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag~VRR~L~~aGF~V~k~~G~g~K 251 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHD----AFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSLSVRKSLLTLGFKVGSSREIGRK 251 (308)
T ss_dssp HHHGGGCCSCCEEEEEEC----CSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCHHHHHHHHHTTCEEEEEECC---
T ss_pred HHHHhhhcccceeEEEeC----CCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHCCCEEEecCCCCCC
Confidence 66 244 38988772 2444333 125788899999999998887655554
Q ss_pred cEEEEEe
Q 046375 268 QCIIESY 274 (276)
Q Consensus 268 ~~vi~a~ 274 (276)
+-.+.|.
T Consensus 252 Reml~A~ 258 (308)
T 3vyw_A 252 RKGTVAS 258 (308)
T ss_dssp CEEEEEE
T ss_pred CceeEEe
Confidence 5555554
No 457
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=89.58 E-value=0.065 Score=47.33 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccccccc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLVT 80 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~~ 80 (276)
+..|+..|... +++|..|||+.+++++ ..++|.|+.|...|++.+.. ....+|+.++.+..
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~vs~----~Tv~r~l~~Le~~Glv~~~~------~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGITE----RVLRTETDVLKQLNLIEPSK------SGMTLTERGLEVYQ 82 (345)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe------cceEEcHHHHHHHH
Confidence 34567777665 7899999999999987 99999999999999998554 45888888875553
No 458
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=89.57 E-value=0.4 Score=42.52 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------------CCCeEEEEccCCC--C-CC-Ccc
Q 046375 162 FDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV------------YDGVTHVSGDMFH--T-IP-NAD 224 (276)
Q Consensus 162 ~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~------------~~ri~~~~~d~~~--~-~p-~~D 224 (276)
.....+|||+++|.|.=+..+++..++..++..|. +.-+..+++ ..++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56678999999999999999999888777899997 544433221 3578888888876 2 33 399
Q ss_pred EEEE
Q 046375 225 ALLL 228 (276)
Q Consensus 225 ~i~l 228 (276)
.|++
T Consensus 226 ~VLl 229 (359)
T 4fzv_A 226 RVLV 229 (359)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 459
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=89.38 E-value=0.18 Score=40.95 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=41.4
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcccc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
+|++..+||+.+|+++ +.+...++.|...|+++... +..++|+.+.
T Consensus 29 ~~V~~~~LA~~LgvS~----~SV~~~lkkL~e~GLV~~~~------~Gv~LTe~G~ 74 (200)
T 2p8t_A 29 EPLGRKQISERLELGE----GSVRTLLRKLSHLDIIRSKQ------RGHFLTLKGK 74 (200)
T ss_dssp SCBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEC--------CEEECHHHH
T ss_pred CCccHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEeC------CCeEECHHHH
Confidence 6899999999999987 99999999999999999887 7899999876
No 460
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=89.38 E-value=0.37 Score=43.46 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=40.7
Q ss_pred CCCceEEEeeCCccHHHHHHH-HHCCC-CeEEEeec-hHHHhhCCC---------C-CCeEEEEccC
Q 046375 163 DSLKSLVDVAGGIGGLISEIV-KSYPH-IKGINFDL-PHVITTAPV---------Y-DGVTHVSGDM 216 (276)
Q Consensus 163 ~~~~~vlDvGgG~G~~~~~l~-~~~p~-l~~~~~Dl-p~~~~~a~~---------~-~ri~~~~~d~ 216 (276)
.+...|+|||++.|.++..++ +..++ .+++.++. |...+.+++ . ++|+++..-.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 567899999999999999988 67776 79999997 776654432 2 5666665433
No 461
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=89.35 E-value=0.21 Score=36.97 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.+.-.|.+.+.. .|.++.+||+.+|+++ ..+..+|+.|+..|.+.+.. ++.|.++.
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~~~~~----~~~~~~l~~l~~~G~l~~i~-----~~~~~~~~ 62 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKETGTDE----QAMRLTLRQAAQQGIITAIV-----KDRYYRND 62 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHTTCCH----HHHHHHHHHHHHTTSEEEEE-----TTEEEEHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEEec-----CCceECHH
Confidence 344456666654 5789999999999976 89999999999999888887 47676644
No 462
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=89.35 E-value=0.23 Score=33.69 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=39.9
Q ss_pred hhhhhhh-CCCCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEe
Q 046375 12 IPDIIHS-HGGPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYG 70 (276)
Q Consensus 12 lf~~L~~-~~~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~ 70 (276)
+.+.+.. .++.+++.++|..+++ .- +++..+++.|.++|++++.. .+.|.
T Consensus 19 Fi~l~~~~~~~~i~l~~aa~~L~v~~k----RRiYDI~NVLe~igli~K~~-----k~~~~ 70 (76)
T 1cf7_A 19 FVSLLQEAKDGVLDLKLAADTLAVRQK----RRIYDITNVLEGIGLIEKKS-----KNSIQ 70 (76)
T ss_dssp HHHHHHHSSTTEEEHHHHHHHTTTCCT----HHHHHHHHHHHHHTSEEEEE-----TTEEE
T ss_pred HHHHHHhCCCCcCcHHHHHHHhCCccc----eehhhHHHHHhHhcceeecC-----CCcEE
Confidence 3444443 2267899999999999 55 99999999999999999986 36664
No 463
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=88.68 E-value=0.27 Score=40.53 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCccccccc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHSSRWLV 79 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~~~~l~ 79 (276)
+.+..+||+.+++++ ..+.++++.|...|++.+.. ...+++|+.++.+.
T Consensus 24 ~~~~~~la~~l~vs~----~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQSG----PTVSQTVARMERDGLVVVAS-----DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECT-----TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEEeC-----CCCeEECHHHHHHH
Confidence 345699999999976 99999999999999999987 36799999887444
No 464
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=88.57 E-value=0.59 Score=34.26 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=51.9
Q ss_pred HhHHHHHcChhhhhhhCCCCCCHHHHHhhcCC----CCCCCc-chHHHHHHHHhcCCceeecCCCCCCCC--eEecCccc
Q 046375 3 ALKCAIELRIPDIIHSHGGPITSSQIASSIDS----PSSPEI-SYIERIMRLLGHKNIFAAQHPSDGGEP--LYGLTHSS 75 (276)
Q Consensus 3 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~----~~~~~~-~~l~~lL~~L~~~Gll~~~~~~~~~~~--~y~~t~~~ 75 (276)
.+.-..++-|+..|.. +|.+..||++.++- .-.++. ..+.+.|+.|...|+++......+++. .|++|+.+
T Consensus 9 ~~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G 86 (118)
T 2esh_A 9 FRGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQG 86 (118)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHH
T ss_pred cccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHH
Confidence 4555677888889987 79999999999831 100155 799999999999999988642111112 48999887
Q ss_pred cc
Q 046375 76 RW 77 (276)
Q Consensus 76 ~~ 77 (276)
..
T Consensus 87 ~~ 88 (118)
T 2esh_A 87 KL 88 (118)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 465
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=88.43 E-value=0.25 Score=44.78 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=45.0
Q ss_pred hHHHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 4 LKCAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 4 l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
++..-+..|++.|... +++|..|||+.+|+++ ..+.++++.|...|++.+.+
T Consensus 36 ~r~~n~~~il~~l~~~-~~~sr~ela~~~gls~----~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK-GPISRIDLSKESELAP----ASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHHHHH-CSBCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHc-CCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEEecc
Confidence 4455566789999876 7999999999999977 99999999999999998864
No 466
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=88.20 E-value=0.17 Score=55.80 Aligned_cols=73 Identities=25% Similarity=0.193 Sum_probs=42.4
Q ss_pred CceEEEeeCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhhCCCC---CCeEEEEccCCCC---CC-CccEEEEccc
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPH-----IKGINFDL-PHVITTAPVY---DGVTHVSGDMFHT---IP-NADALLLKWV 231 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~-----l~~~~~Dl-p~~~~~a~~~---~ri~~~~~d~~~~---~p-~~D~i~l~~v 231 (276)
..+||+||+|+|..+..+++...+ .+++.-|. ++..+.+++. -.++....|..++ .+ +||+|+++++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 468999999999887777766542 24677787 6666666551 1233322233333 23 3999999999
Q ss_pred ccCCCc
Q 046375 232 LHNWSD 237 (276)
Q Consensus 232 lh~~~~ 237 (276)
||..++
T Consensus 1321 l~~t~~ 1326 (2512)
T 2vz8_A 1321 LATLGD 1326 (2512)
T ss_dssp ------
T ss_pred cccccc
Confidence 996443
No 467
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=88.19 E-value=0.23 Score=42.50 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=50.2
Q ss_pred CceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCeEEEEccCCC------CCC-CccEEEE
Q 046375 165 LKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAPV----YDGVTHVSGDMFH------TIP-NADALLL 228 (276)
Q Consensus 165 ~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~~----~~ri~~~~~d~~~------~~p-~~D~i~l 228 (276)
...++|+=+|||.+++++++ +.-+++.+|+ |..++..++ .+|++++..|.++ |-+ .+|+|++
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi 165 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFI 165 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence 56789999999999999999 4468999999 887776665 5789999999765 222 4999887
No 468
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=88.18 E-value=0.22 Score=36.04 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=49.4
Q ss_pred HhHHHHHcChhhhhhhCCCCCCHHHHHhhc----CCCCCCCcchHHHHHHHHhcCCceeecCCCCCCC--CeEecCcccc
Q 046375 3 ALKCAIELRIPDIIHSHGGPITSSQIASSI----DSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGE--PLYGLTHSSR 76 (276)
Q Consensus 3 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~----~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~--~~y~~t~~~~ 76 (276)
.++-.+++-|+..|.. +|.+--+|++.+ ++++ ..+.+.|+.|...|+|+......+++ -.|++|+.++
T Consensus 5 ~~~g~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i~~----~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~ 78 (108)
T 3l7w_A 5 VSALLIEYLILAIVSK--HDSYGYDISQTIKLIASIKE----STLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGE 78 (108)
T ss_dssp CCHHHHHHHHHHHHHH--SCEEHHHHHHHHTTTCCCCH----HHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHhCCCc----ChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHH
Confidence 3455667778888887 788887777774 6765 99999999999999999864210111 1388888775
No 469
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=88.07 E-value=0.42 Score=31.50 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=41.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+..|++.|..+ ||.++-.||+.+|+.- +.-+.+-|..|...|+|..++
T Consensus 12 ee~I~~fL~~~-Gp~~AL~IAK~LGlkt---AK~VNp~LY~m~~~~lL~~De 59 (72)
T 3eyi_A 12 EEDIYRFLKDN-GPQRALVIAQALGMRT---AKDVNRDLYRMKSRHLLDMDE 59 (72)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTCCS---GGGTHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHc-CCchHHHHHHHhCcch---hhhcCHHHHHHHHccCcCCCC
Confidence 55689999887 8999999999999964 355999999999999997765
No 470
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=87.76 E-value=0.32 Score=34.88 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhc
Q 046375 6 CAIELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGH 52 (276)
Q Consensus 6 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~ 52 (276)
.+.++||+..|.. ++.|..|||+.+|++. ..+.|+=++|-.
T Consensus 44 l~~R~~l~~~L~~--ge~TQREIA~~lGiS~----stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR--GEMSQRELKNELGAGI----ATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHCCCH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHHCCCh----hhhhHHHHHHHH
Confidence 4678999999987 7899999999999966 888888777643
No 471
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=87.45 E-value=0.21 Score=37.90 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=32.6
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
...|.++||+++|+++ .-+.++|+-|...|++....
T Consensus 50 ~~ps~~~LA~~~~~s~----~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 50 YFPTPNQLQEGMSISV----EECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp CSCCHHHHHTTSSSCH----HHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 4579999999999977 99999999999999999853
No 472
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=86.63 E-value=0.73 Score=38.64 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHhccccCCCCCceEEEeeCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 046375 151 TREILAGYKHGFDSLKSLVDVAGGIGGLISEIVKSYPHIKGINFDL-PHVITTAP 204 (276)
Q Consensus 151 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~l~~~~~Dl-p~~~~~a~ 204 (276)
...++..+. .....|||..||+|..+.+..+. +-+++++|+ |..++.++
T Consensus 202 ~~~~i~~~~---~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 202 IERIIRASS---NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 344444432 35679999999999999998887 568999999 77766554
No 473
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=86.49 E-value=0.3 Score=37.59 Aligned_cols=63 Identities=14% Similarity=0.371 Sum_probs=44.4
Q ss_pred HcChhhhhhhCC-CCCCHHHHHhhcCC-CCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 9 ELRIPDIIHSHG-GPITSSQIASSIDS-PSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 9 ~l~lf~~L~~~~-~~~t~~eLA~~~~~-~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
+.-|++.|.... ++.|++||.+.+.- .|.++..-+.|-|+.|+..|+|.+... +++..+|.++
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~-~~~~~~Y~~~ 83 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHF-EGGKSVFELS 83 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEC-GGGCEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEe-CCCceEEEec
Confidence 455788887654 68999999999821 111244899999999999999998752 1123467653
No 474
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=86.06 E-value=0.43 Score=37.80 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=35.9
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEec
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~ 71 (276)
++|-++||..+|+++ ..+.|.|..|...|++...+ +++.+
T Consensus 164 ~~t~~~lA~~lg~sr----~tvsR~l~~l~~~g~I~~~~------~~i~i 203 (207)
T 2oz6_A 164 KITRQEIGRIVGCSR----EMVGRVLKSLEEQGLVHVKG------KTMVV 203 (207)
T ss_dssp ECCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEET------TEEEE
T ss_pred ccCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEecC------CEEEE
Confidence 589999999999987 99999999999999999887 66654
No 475
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=85.83 E-value=0.29 Score=35.97 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=47.9
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhc------CCCCCCCcchHHHHHHHHhcCCceeecCC-CCCCCC--eEecCcccc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSI------DSPSSPEISYIERIMRLLGHKNIFAAQHP-SDGGEP--LYGLTHSSR 76 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~------~~~~~~~~~~l~~lL~~L~~~Gll~~~~~-~~~~~~--~y~~t~~~~ 76 (276)
.+++-|...|.. +|.+--||++.+ ++++ ..+...|+-|...|+++.... +++++. .|++|+.++
T Consensus 13 ~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~----gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~ 85 (116)
T 3hhh_A 13 ILEGLVLAIIQR--KETYGYEITKILNDQGFTEIVE----GTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGE 85 (116)
T ss_dssp HHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSCCH----HHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHH
T ss_pred hHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCCCc----cHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHH
Confidence 456667788887 799999999998 4655 899999999999999987631 111122 488988876
No 476
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=85.56 E-value=0.58 Score=37.43 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=37.7
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++|.++||..+|+++ ..+.|.|..|...|++...+ +++.+..
T Consensus 169 ~~t~~~lA~~lg~sr----~tvsR~l~~L~~~g~I~~~~------~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGSHR----EVITRMLRYFQVEGLVKLSR------GKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEESC
T ss_pred cCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEeCC------CEEEEeC
Confidence 789999999999987 99999999999999999877 7776644
No 477
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=85.48 E-value=0.47 Score=39.42 Aligned_cols=51 Identities=6% Similarity=0.077 Sum_probs=42.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 12 IPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 12 lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
|.-.|.. ++.|.++||..+|+++ +-+...|.-|...|+|.+.. +++..+..
T Consensus 170 l~~~l~~--~~~t~~~la~~~~l~~----~~V~~~l~~L~~~~~v~~~~-----~~~~~~~~ 220 (232)
T 2qlz_A 170 LHYLLLN--GRATVEELSDRLNLKE----REVREKISEMARFVPVKIIN-----DNTVVLDE 220 (232)
T ss_dssp HHHHHHS--SEEEHHHHHHHHTCCH----HHHHHHHHHHTTTSCEEEET-----TTEEEECH
T ss_pred HHHHHhc--CCCCHHHHHHHhCcCH----HHHHHHHHHHHhcCCeEEec-----CCeEEecH
Confidence 4445555 7999999999999988 99999999999999998776 47777654
No 478
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=85.29 E-value=0.46 Score=34.81 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=49.3
Q ss_pred hHHHHHcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCCcchHHHHHHHHhcCCceeecCC-CCCCCC--eEecC
Q 046375 4 LKCAIELRIPDIIHSHGGPITSSQIASSI--------DSPSSPEISYIERIMRLLGHKNIFAAQHP-SDGGEP--LYGLT 72 (276)
Q Consensus 4 l~~a~~l~lf~~L~~~~~~~t~~eLA~~~--------~~~~~~~~~~l~~lL~~L~~~Gll~~~~~-~~~~~~--~y~~t 72 (276)
++-.+++-|...|.. +|.+--+|.+.+ ++++ ..+...|+.|...|+++.... +++++. .|++|
T Consensus 9 ~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i~~----gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT 82 (116)
T 3f8b_A 9 LRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMELNE----ATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLT 82 (116)
T ss_dssp HHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCCCH----HHHHHHHHHHHHTTSEEEEEEC----CCEEEEEEC
T ss_pred HhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHCCCEEEEeeccCCCCCceEEEEC
Confidence 444567778888887 799999999887 4544 899999999999999997631 011122 48898
Q ss_pred cccc
Q 046375 73 HSSR 76 (276)
Q Consensus 73 ~~~~ 76 (276)
+.++
T Consensus 83 ~~G~ 86 (116)
T 3f8b_A 83 EIGH 86 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 479
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=85.21 E-value=0.55 Score=37.23 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=37.6
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++|-++||+.+|+++ ..+.|.|+.|...|++...+ +++.+..
T Consensus 146 ~~t~~~lA~~lg~sr----~tvsR~l~~L~~~g~I~~~~------~~i~i~d 187 (202)
T 2zcw_A 146 KATHDELAAAVGSVR----ETVTKVIGELAREGYIRSGY------GKIQLLD 187 (202)
T ss_dssp ECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEESC
T ss_pred CCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEeCC------CEEEEeC
Confidence 589999999999987 99999999999999999877 7777754
No 480
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=85.08 E-value=0.55 Score=37.14 Aligned_cols=63 Identities=14% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCCcchHHHHHHHHhcCCceeecCCCC-CC--CCeEecCcccc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSI--------DSPSSPEISYIERIMRLLGHKNIFAAQHPSD-GG--EPLYGLTHSSR 76 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~--------~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~-~~--~~~y~~t~~~~ 76 (276)
+++-|...|.. +|.+.-||++.+ ++++ ..+.+.|+-|...|+++...... ++ .-.|++|+.++
T Consensus 3 l~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~s~----~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~ 76 (179)
T 1yg2_A 3 LPHVILTVLST--RDATGYDITKEFSASIGYFWKASH----QQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGR 76 (179)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCCCH----HHHHHHHHHHHHTTSEEECCC---------CEEECHHHH
T ss_pred hHHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCCCc----CcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHH
Confidence 34557778877 799999999998 4544 89999999999999999765211 11 22599999875
No 481
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=85.06 E-value=0.45 Score=45.08 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=48.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhc-----CCceeecCCCCCCCCeEecCcccc
Q 046375 10 LRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGH-----KNIFAAQHPSDGGEPLYGLTHSSR 76 (276)
Q Consensus 10 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~-----~Gll~~~~~~~~~~~~y~~t~~~~ 76 (276)
..|+..|..+ +.+|.++||+.+++++ ..+.+.|+.|.. .|++++.+ +.|.+++...
T Consensus 433 ~~iL~~l~~~-~~it~~~la~~l~~s~----~~~~~~L~~L~~~~~~~~glie~~g------~~y~L~~~~~ 493 (583)
T 3lmm_A 433 AIVLYLLFQR-PFITIDVVARGLQSGK----EAARNALEAARQTTVAGAPLIIAHD------GVWLLGNACR 493 (583)
T ss_dssp HHHHHHHHHS-SSBCHHHHHHHHTSCH----HHHHHHHHHHHTCEETTEESEEEET------TEEEECHHHH
T ss_pred HHHHHHHHHC-CCcCHHHHHHHhCcCH----HHHHHHHHHHHhhhccccceEEEeC------CEEEECHHHH
Confidence 4577777776 6899999999999976 899999999999 89999988 7899998643
No 482
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=85.04 E-value=0.28 Score=44.88 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=46.8
Q ss_pred HcChhhhhhhC-CCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCC---eEecCccccc
Q 046375 9 ELRIPDIIHSH-GGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEP---LYGLTHSSRW 77 (276)
Q Consensus 9 ~l~lf~~L~~~-~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~---~y~~t~~~~~ 77 (276)
++.++..|.+. ++++|..|||+++++++ ..+.|+++-|...|+|.|.... .+. ...+|+.++.
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~~~----~~~t~~~~~le~~g~v~r~~~~--~D~R~~~i~lT~~g~~ 472 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEFKP----YYLTKALQKLKDLKLLSKKRSL--QDERTVIVYVTDTQKA 472 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCCCH----HHHHHHHHHHHTTTTSCCEECC--SSSSCCEEECCSSHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCCCH----HHHHHHHHHHHHCCCEeecCCC--CCCCeEEEEECHHHHH
Confidence 45566677653 15799999999999966 9999999999999999987521 112 3667776653
No 483
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=84.99 E-value=0.34 Score=34.79 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=37.5
Q ss_pred HcChhhhhhhCCCCC-CHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecC
Q 046375 9 ELRIPDIIHSHGGPI-TSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQH 60 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~-t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~ 60 (276)
+..|...|.. |+.+ |..+||+.+|++. ..+.+-|+.|...|++....
T Consensus 30 ~~~I~~~l~~-g~~lps~~eLa~~lgVSr----~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDG-NEGLLVASKIADRVGITR----SVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBT-TEEEECHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcC-CCcCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEe
Confidence 3445555544 2455 9999999999976 89999999999999998765
No 484
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=84.98 E-value=0.67 Score=37.45 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=37.7
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++|-++||..+|+++ ..+.|.|..|...|++...+ +.+.+..
T Consensus 175 ~~t~~~iA~~lg~sr----~tvsR~l~~L~~~g~I~~~~------~~i~i~d 216 (231)
T 3e97_A 175 PLGTQDIMARTSSSR----ETVSRVLKRLEAHNILEVSP------RSVTLLD 216 (231)
T ss_dssp CCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECS------SCEEESC
T ss_pred CCCHHHHHHHhCCcH----HHHHHHHHHHHHCCcEEecC------CEEEEeC
Confidence 689999999999987 99999999999999999887 6776654
No 485
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=84.96 E-value=0.53 Score=37.34 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=35.9
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEec
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~ 71 (276)
++|-++||..+|+++ ..+.|.|..|...|++...+ +.+.+
T Consensus 167 ~~t~~~iA~~lg~sr----~tvsR~l~~L~~~g~I~~~~------~~i~i 206 (210)
T 3ryp_A 167 KITRQEIGQIVGCSR----ETVGRILKMLEDQNLISAHG------KTIVV 206 (210)
T ss_dssp ECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEE
T ss_pred ccCHHHHHHHhCCcH----HHHHHHHHHHHHCCcEEeCC------CEEEE
Confidence 689999999999987 99999999999999999887 66654
No 486
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=84.93 E-value=0.69 Score=37.40 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-++|.++||..+|+++ ..+.|.|..|...|++...+ +++.+..
T Consensus 179 ~~~t~~~lA~~lg~sr----~tvsR~l~~l~~~g~I~~~~------~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNMTV----SNAIRTLSTFVSERMLALDG------KRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTSCH----HHHHHHHHHHHHTTSEEEET------TEEEESC
T ss_pred cccCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEeeCC------CEEEEeC
Confidence 4789999999999987 99999999999999999887 6666643
No 487
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.70 E-value=5.4 Score=38.29 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=75.0
Q ss_pred CCceEEEeeCCccHHHHHHHHHCC--------CCeEEEeechHHHhhCCC------------------------------
Q 046375 164 SLKSLVDVAGGIGGLISEIVKSYP--------HIKGINFDLPHVITTAPV------------------------------ 205 (276)
Q Consensus 164 ~~~~vlDvGgG~G~~~~~l~~~~p--------~l~~~~~Dlp~~~~~a~~------------------------------ 205 (276)
+..+||-+|||.=...-+|...+| +++++=+|+|++++.=++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 468999999999999999998866 778888899998853111
Q ss_pred CCCeEEEEccCCCC--C-----------CC-ccEEEEcccccCCCcccc-------------------------------
Q 046375 206 YDGVTHVSGDMFHT--I-----------PN-ADALLLKWVLHNWSDEAC------------------------------- 240 (276)
Q Consensus 206 ~~ri~~~~~d~~~~--~-----------p~-~D~i~l~~vlh~~~~~~~------------------------------- 240 (276)
.++.++++.|+.+. + |+ .-++++=-+|.+++++++
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~~~~~~~~~e~~~~~~~~d~f~ 266 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKMENSHFIILEQLIPKGPFEPFS 266 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTSSSEEEEEEEECCTTCTTSHHH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhCCCceEEEEEeecCCCCCChHH
Confidence 25899999999871 1 22 346666677778877665
Q ss_pred -------------------ccCHHHHHHhHhhCCCCceEEEe
Q 046375 241 -------------------ERTELEWKNIPEKGGSPRYRIIK 263 (276)
Q Consensus 241 -------------------~rt~~e~~~ll~~aGf~~~~~~~ 263 (276)
..+.++..+.|.+.||+.+....
T Consensus 267 ~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 267 KQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp HHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 12688899999999998766554
No 488
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=84.57 E-value=0.56 Score=37.80 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEec
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGL 71 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~ 71 (276)
++|-++||..+|+++ ..+.|.|..|...|++...+ +++.+
T Consensus 187 ~lt~~~lA~~lg~sr----~tvsR~l~~L~~~g~I~~~~------~~i~i 226 (230)
T 3iwz_A 187 RVSRQELARLVGCSR----EMAGRVLKKLQADGLLHARG------KTVVL 226 (230)
T ss_dssp ECCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEE
T ss_pred CCCHHHHHHHhCCcH----HHHHHHHHHHHHCCCEEECC------CEEEE
Confidence 479999999999987 99999999999999999887 66654
No 489
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=84.55 E-value=0.66 Score=40.36 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=44.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
...|.+.|... ++.|.+|||+.+++++ ..+.|-++.|...|++..... ...|++.+.
T Consensus 7 ~~~Il~~L~~~-~~~s~~eLa~~l~vS~----~ti~r~l~~L~~~G~~i~~~~----g~GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLANG-EFHSGEQLGETLGMSR----AAINKHIQTLRDWGVDVFTVP----GKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHTTS-SCBCHHHHHHHHTSCH----HHHHHHHHHHHHTTCCCEEET----TTEEECSSC
T ss_pred HHHHHHHHHcC-CCcCHHHHHHHHCCCH----HHHHHHHHHHHhCCCcEEEec----CCCcEEeec
Confidence 34577888754 6899999999999977 999999999999998864431 146888653
No 490
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=84.46 E-value=0.087 Score=46.54 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=46.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 8 IELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 8 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
.+..++-.|-.. ++.|+.|||+.+|++. +.+.+.|+.|...|++...+ +.+.+|+..+
T Consensus 19 ~ea~vY~~Ll~~-g~~t~~eia~~~gv~~----~~Vy~~L~~L~~~GlV~~~~---g~p~~y~av~ 76 (342)
T 3qph_A 19 YEILTYWTLLVY-GPSTAKEISTKSGIPY----NRVYDTISSLKLRGFVTEIE---GTPKVYAAYS 76 (342)
T ss_dssp HTTSCSHHHHHH-HHHHHSCCSSSTTSSS----CSCCHHHHHHHHHTSEEEEC---CTTCEEEECC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCH----HHHHHHHHHHHHCCCEEEEc---CceeEEEEcC
Confidence 455666666554 7899999999999988 99999999999999999875 2355676544
No 491
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=84.41 E-value=0.61 Score=37.19 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-++|.++||..+|+++ ..+.|.|..|...|++...+ +.+.+..
T Consensus 162 ~~~t~~~lA~~lg~sr----~tvsR~l~~l~~~g~I~~~~------~~i~i~d 204 (216)
T 4ev0_A 162 FQIRHHELAALAGTSR----ETVSRVLHALAEEGVVRLGP------GTVEVRE 204 (216)
T ss_dssp EECCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEET------TEEEESC
T ss_pred CCCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEecC------CEEEEeC
Confidence 3589999999999987 99999999999999999877 7777654
No 492
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=84.31 E-value=0.54 Score=37.06 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=37.6
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++|-++||+.+|+++ ..+.|.|..|...|+++..+ +.+.+..
T Consensus 139 ~~t~~~lA~~lg~sr----~tvsR~l~~L~~~g~I~~~~------~~i~i~d 180 (195)
T 3b02_A 139 TVSHEEIADATASIR----ESVSKVLADLRREGLIATAY------RRVYLLD 180 (195)
T ss_dssp ECCHHHHHHTTTSCH----HHHHHHHHHHHHHTSEEEET------TEEEECC
T ss_pred cCCHHHHHHHhCCCH----HHHHHHHHHHHHCCCEEecC------CEEEEeC
Confidence 589999999999987 99999999999999999887 6777654
No 493
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=84.29 E-value=0.74 Score=37.08 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=37.8
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-++|-++||..+|+++ ..+.|.|..|...|++...+ +++.+..
T Consensus 176 ~~~t~~~lA~~lg~sr----~tvsR~l~~l~~~g~I~~~~------~~i~i~d 218 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASR----ETVNKALADFAHRGWIRLEG------KSVLISD 218 (227)
T ss_dssp CCCCHHHHHHHHTSCH----HHHHHHHHHHHHTTSEEEET------TEEEESC
T ss_pred CCCCHHHHHHHhCCcH----HHHHHHHHHHHHCCCEEecC------CEEEEcC
Confidence 3689999999999987 89999999999999999887 6776643
No 494
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=84.09 E-value=0.48 Score=42.31 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=44.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecC
Q 046375 9 ELRIPDIIHSHGGPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLT 72 (276)
Q Consensus 9 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t 72 (276)
+..|++.|.. +|.++++|++++|++. ..+...|-.|.-.|++.+.. .++|+++
T Consensus 330 ~~~vl~~l~~--~~~~~D~l~~~~gl~~----~~v~~~L~~LEl~G~v~~~~-----Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP--SPVGIDDLIRLSGISP----AVVRTILLELELAGRLERHG-----GSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS--SCEEHHHHHHHHCCCH----HHHHHHHHHHHHTTCCEECT-----TSEEEC-
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCcCH----HHHHHHHHHHHhCCcEEeCC-----CceEecC
Confidence 3457888875 7999999999999977 89999999999999999988 3788764
No 495
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=84.05 E-value=0.24 Score=38.01 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=47.7
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCCcchHHHHHHHHhcCCceeecCCC-CCCC--CeEecCccc
Q 046375 7 AIELRIPDIIHSHGGPITSSQIASSI--------DSPSSPEISYIERIMRLLGHKNIFAAQHPS-DGGE--PLYGLTHSS 75 (276)
Q Consensus 7 a~~l~lf~~L~~~~~~~t~~eLA~~~--------~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~-~~~~--~~y~~t~~~ 75 (276)
-+++-|+..|.. +|.+..||++.+ ++++ ..+.+.|+-|...|+|++.... ++++ -.|++|+.+
T Consensus 41 ~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~is~----gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G 114 (145)
T 1xma_A 41 YVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVIKE----TTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEG 114 (145)
T ss_dssp THHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCCCH----HHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHH
T ss_pred cHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCcCh----hHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHH
Confidence 456777888876 799999998888 4655 9999999999999999886421 0111 148888876
Q ss_pred c
Q 046375 76 R 76 (276)
Q Consensus 76 ~ 76 (276)
+
T Consensus 115 ~ 115 (145)
T 1xma_A 115 I 115 (145)
T ss_dssp H
T ss_pred H
Confidence 5
No 496
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=83.99 E-value=0.77 Score=37.64 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-++|-++||..+|+++ ..+.|.|..|...|++...+ +.+.+..
T Consensus 192 ~~lt~~~lA~~lG~sr----~tvsR~l~~L~~~GlI~~~~------~~i~I~d 234 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTR----VTVTRLLGDLREKKMISIHK------KKITVHK 234 (243)
T ss_dssp SCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEEET------TEEEECC
T ss_pred ccCCHHHHHHHHCCcH----HHHHHHHHHHHHCCCEEEcC------CEEEECC
Confidence 3689999999999987 99999999999999999887 7776644
No 497
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=83.95 E-value=0.62 Score=37.44 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=37.7
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
-++|.++||..+|+++ ..+.|.|..|...|++...+ +.+.+..
T Consensus 177 ~~~t~~~lA~~lg~sr----~tvsR~l~~l~~~g~I~~~~------~~i~i~d 219 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQP----ETFSRIMHRLGDEGIIHLDG------REISILD 219 (227)
T ss_dssp CCSCTHHHHHHTTSCH----HHHHHHHHHHHHHTSEEESS------SCEEESC
T ss_pred ecCCHHHHHHHhCCCH----HHHHHHHHHHHHCCcEEecC------CEEEEeC
Confidence 4689999999999987 99999999999999999987 6676643
No 498
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=83.75 E-value=1.3 Score=38.23 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=42.1
Q ss_pred CCCCceEEEeeC------CccHHHHHHHHHCCC-CeEEEeechHHHhhCCCCCCeEEEEccCCCC-CC-CccEEEE
Q 046375 162 FDSLKSLVDVAG------GIGGLISEIVKSYPH-IKGINFDLPHVITTAPVYDGVTHVSGDMFHT-IP-NADALLL 228 (276)
Q Consensus 162 ~~~~~~vlDvGg------G~G~~~~~l~~~~p~-l~~~~~Dlp~~~~~a~~~~ri~~~~~d~~~~-~p-~~D~i~l 228 (276)
.+...+|||+|+ -.|.+ .+.+..|. ..++..|+-++...+ + .++.||+.+. .. .+|+|+.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda---~--~~IqGD~~~~~~~~k~DLVIS 175 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA---D--STLIGDCATVHTANKWDLIIS 175 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS---S--EEEESCGGGEEESSCEEEEEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC---C--eEEEccccccccCCCCCEEEe
Confidence 578899999996 67774 44455786 689999995443322 1 5599998762 22 4999875
No 499
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=83.26 E-value=0.85 Score=37.48 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=38.6
Q ss_pred CCCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCcc
Q 046375 21 GPITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTHS 74 (276)
Q Consensus 21 ~~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~~ 74 (276)
-++|-++||..+|+++ ..+.|.|..|...|++...+ +++.+...
T Consensus 176 ~~~t~~~iA~~lG~sr----~tvsR~l~~L~~~g~I~~~~------~~i~i~d~ 219 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHH----VTVSRVLASLKRENILDKKK------NKIIVYNL 219 (250)
T ss_dssp CCCCHHHHHHHHTCCH----HHHHHHHHHHHHTTSEEECS------SEEEESCH
T ss_pred CCCCHHHHHHHhCCcH----HHHHHHHHHHHHCCCeEeCC------CEEEEecH
Confidence 3789999999999987 99999999999999999987 67766543
No 500
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=83.07 E-value=0.78 Score=37.27 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=37.2
Q ss_pred CCCHHHHHhhcCCCCCCCcchHHHHHHHHhcCCceeecCCCCCCCCeEecCc
Q 046375 22 PITSSQIASSIDSPSSPEISYIERIMRLLGHKNIFAAQHPSDGGEPLYGLTH 73 (276)
Q Consensus 22 ~~t~~eLA~~~~~~~~~~~~~l~~lL~~L~~~Gll~~~~~~~~~~~~y~~t~ 73 (276)
++|-++||+.+|+++ ..+.|.|..|...|+++..+ +++.+..
T Consensus 186 ~~t~~~lA~~lG~sr----~tvsR~l~~l~~~glI~~~~------~~i~I~d 227 (232)
T 1zyb_A 186 KVKMDDLARCLDDTR----LNISKTLNELQDNGLIELHR------KEILIPD 227 (232)
T ss_dssp ECCHHHHHHHHTSCH----HHHHHHHHHHHHTTSCEEET------TEEEESC
T ss_pred cCCHHHHHHHhCCCh----hHHHHHHHHHHHCCCEEecC------CEEEEeC
Confidence 589999999999987 89999999999999999887 6776644
Done!