Query 046376
Match_columns 414
No_of_seqs 120 out of 1152
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:29:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 3.2E-60 7E-65 470.6 29.6 375 9-404 23-436 (437)
2 PTZ00206 amino acid transporte 100.0 1.1E-52 2.3E-57 427.1 24.2 364 22-403 58-465 (467)
3 KOG1304 Amino acid transporter 100.0 6E-52 1.3E-56 405.1 26.2 357 24-402 47-449 (449)
4 PLN03074 auxin influx permease 100.0 2.6E-48 5.7E-53 393.6 24.3 362 23-413 45-462 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.6E-50 3.5E-55 406.4 -4.3 358 22-399 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.3E-40 2.8E-45 329.0 22.1 370 22-406 4-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.5E-39 3.4E-44 300.8 5.8 361 22-410 115-522 (524)
8 COG0814 SdaC Amino acid permea 100.0 2.9E-27 6.3E-32 236.6 26.0 362 22-398 7-411 (415)
9 PRK10483 tryptophan permease; 99.9 7.1E-20 1.5E-24 181.1 24.5 326 19-370 6-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.4E-19 3.1E-24 180.1 24.7 324 23-372 2-367 (394)
11 PRK09664 tryptophan permease T 99.8 1.6E-19 3.4E-24 178.5 23.5 325 18-370 4-374 (415)
12 PRK15132 tyrosine transporter 99.8 6.4E-19 1.4E-23 174.9 24.7 345 24-393 3-390 (403)
13 TIGR00837 araaP aromatic amino 99.8 2.5E-19 5.4E-24 178.7 19.7 317 29-370 2-359 (381)
14 PRK13629 threonine/serine tran 99.7 1E-14 2.2E-19 144.6 25.3 352 30-391 25-435 (443)
15 TIGR00814 stp serine transport 99.7 5.2E-15 1.1E-19 147.3 18.8 345 30-388 9-396 (397)
16 PRK10655 potE putrescine trans 99.0 1.2E-07 2.7E-12 96.4 24.7 89 20-111 4-92 (438)
17 PRK10644 arginine:agmatin anti 98.9 8.4E-07 1.8E-11 90.5 25.2 88 20-111 6-94 (445)
18 PRK11021 putative transporter; 98.8 6.2E-06 1.3E-10 83.2 26.9 85 25-112 2-87 (410)
19 TIGR03810 arg_ornith_anti argi 98.8 2.2E-06 4.7E-11 88.0 23.7 87 23-112 2-91 (468)
20 PRK10435 cadB lysine/cadaverin 98.7 4.3E-06 9.2E-11 85.0 25.2 109 20-133 3-111 (435)
21 TIGR00905 2A0302 transporter, 98.7 2.2E-06 4.8E-11 88.1 23.2 113 21-135 6-119 (473)
22 TIGR00909 2A0306 amino acid tr 98.7 1.7E-06 3.6E-11 87.7 21.7 111 21-135 2-113 (429)
23 PRK11049 D-alanine/D-serine/gl 98.7 4.1E-06 8.8E-11 86.0 24.6 90 20-112 18-108 (469)
24 TIGR01773 GABAperm gamma-amino 98.7 4.1E-06 8.9E-11 85.6 23.3 108 20-131 10-118 (452)
25 PRK15049 L-asparagine permease 98.7 5.9E-06 1.3E-10 85.4 23.8 88 22-112 28-116 (499)
26 PRK10249 phenylalanine transpo 98.7 6.5E-06 1.4E-10 84.3 23.8 101 8-111 5-108 (458)
27 PRK11387 S-methylmethionine tr 98.7 4.6E-06 9.9E-11 85.7 22.5 90 20-111 12-102 (471)
28 TIGR00930 2a30 K-Cl cotranspor 98.6 1.5E-05 3.2E-10 88.0 26.0 111 22-135 76-189 (953)
29 TIGR00906 2A0303 cationic amin 98.6 4.3E-06 9.4E-11 87.5 20.8 106 3-112 9-117 (557)
30 PRK10238 aromatic amino acid t 98.5 1.3E-05 2.7E-10 82.1 21.8 108 20-131 10-118 (456)
31 KOG1287 Amino acid transporter 98.5 5.5E-06 1.2E-10 83.1 18.3 328 16-375 6-391 (479)
32 TIGR00912 2A0309 spore germina 98.5 5.6E-06 1.2E-10 81.9 17.7 85 24-111 3-87 (359)
33 TIGR00908 2A0305 ethanolamine 98.5 1.6E-05 3.5E-10 80.9 20.6 110 21-133 6-115 (442)
34 PRK10836 lysine transporter; P 98.4 7E-05 1.5E-09 77.4 24.1 91 18-110 11-102 (489)
35 PRK11357 frlA putative fructos 98.4 6.5E-05 1.4E-09 76.6 23.1 88 20-111 6-97 (445)
36 TIGR00913 2A0310 amino acid pe 98.4 0.00011 2.4E-09 75.6 25.0 90 22-112 2-92 (478)
37 PRK10746 putative transport pr 98.3 0.00018 3.8E-09 73.8 24.3 89 20-111 8-97 (461)
38 PRK10580 proY putative proline 98.3 0.00021 4.5E-09 73.2 24.5 90 20-112 7-97 (457)
39 PF13520 AA_permease_2: Amino 98.3 5.1E-05 1.1E-09 76.7 19.6 102 25-131 2-104 (426)
40 TIGR00911 2A0308 L-type amino 98.2 0.00013 2.7E-09 75.7 20.2 88 20-110 40-130 (501)
41 PRK10197 gamma-aminobutyrate t 98.2 0.0004 8.6E-09 70.9 22.1 75 34-111 4-79 (446)
42 KOG3832 Predicted amino acid t 98.1 1.4E-05 3E-10 70.6 9.0 152 30-185 18-242 (319)
43 COG1113 AnsP Gamma-aminobutyra 97.9 0.0007 1.5E-08 67.4 17.5 139 22-177 13-154 (462)
44 COG0531 PotE Amino acid transp 97.9 0.0036 7.8E-08 63.8 23.6 110 19-132 9-119 (466)
45 COG0833 LysP Amino acid transp 97.9 0.0054 1.2E-07 62.5 23.6 150 22-186 44-197 (541)
46 TIGR00907 2A0304 amino acid pe 97.8 0.023 4.9E-07 58.6 26.5 83 21-106 11-96 (482)
47 PF03845 Spore_permease: Spore 97.7 0.0011 2.3E-08 64.6 15.7 81 25-112 3-86 (320)
48 PRK11375 allantoin permease; P 97.4 0.026 5.7E-07 58.2 20.3 95 87-183 88-188 (484)
49 TIGR03813 put_Glu_GABA_T putat 97.2 0.15 3.3E-06 52.4 24.7 31 215-246 219-249 (474)
50 PRK15238 inner membrane transp 97.2 0.22 4.9E-06 51.5 25.2 84 21-108 6-90 (496)
51 TIGR02358 thia_cytX probable h 97.1 0.22 4.7E-06 49.9 22.8 87 87-184 57-143 (386)
52 TIGR00800 ncs1 NCS1 nucleoside 97.0 0.08 1.7E-06 54.0 20.1 52 87-139 75-126 (442)
53 PRK09442 panF sodium/panthothe 97.0 0.39 8.4E-06 49.6 24.9 144 21-181 40-187 (483)
54 COG3949 Uncharacterized membra 97.0 0.066 1.4E-06 51.3 17.0 128 30-176 9-139 (349)
55 TIGR02119 panF sodium/pantothe 97.0 0.29 6.3E-06 50.3 23.4 146 20-182 38-187 (471)
56 TIGR03428 ureacarb_perm permea 96.9 0.65 1.4E-05 47.8 28.3 90 21-113 12-103 (475)
57 TIGR00910 2A0307_GadC glutamat 96.8 0.39 8.4E-06 49.9 22.8 28 215-243 219-246 (507)
58 KOG1286 Amino acid transporter 96.7 0.045 9.8E-07 57.1 15.3 103 5-108 12-116 (554)
59 COG1457 CodB Purine-cytosine p 96.2 0.94 2E-05 45.8 20.3 81 91-185 84-165 (442)
60 PF00324 AA_permease: Amino ac 96.2 0.045 9.7E-07 56.4 11.2 75 34-110 7-82 (478)
61 TIGR00813 sss transporter, SSS 95.9 1.2 2.5E-05 44.9 20.1 143 22-182 3-146 (407)
62 KOG2082 K+/Cl- cotransporter K 95.4 2.5 5.4E-05 45.0 19.9 161 23-188 114-285 (1075)
63 PRK00701 manganese transport p 95.4 3.8 8.2E-05 41.8 22.8 44 88-132 94-137 (439)
64 PF00474 SSF: Sodium:solute sy 95.1 1.4 3E-05 44.3 17.3 143 22-182 6-150 (406)
65 TIGR02711 symport_actP cation/ 95.0 5.8 0.00012 41.7 24.8 82 22-108 67-150 (549)
66 COG1914 MntH Mn2+ and Fe2+ tra 94.9 4.8 0.0001 40.6 23.5 54 317-370 324-378 (416)
67 PRK11017 codB cytosine permeas 94.8 5.1 0.00011 40.3 22.8 23 87-109 70-92 (404)
68 KOG1289 Amino acid transporter 94.6 4 8.7E-05 42.1 18.7 35 336-370 408-444 (550)
69 PF02133 Transp_cyt_pur: Perme 94.0 0.12 2.5E-06 52.7 6.5 48 88-136 71-118 (440)
70 TIGR00835 agcS amino acid carr 93.2 7.1 0.00015 39.5 17.3 78 24-104 47-133 (425)
71 PRK12488 acetate permease; Pro 92.2 17 0.00037 38.2 26.3 82 22-109 67-151 (549)
72 COG0591 PutP Na+/proline sympo 91.8 18 0.00039 37.5 24.5 100 28-130 44-147 (493)
73 PF02554 CstA: Carbon starvati 88.9 9.2 0.0002 37.7 12.8 110 14-130 36-155 (376)
74 PF01566 Nramp: Natural resist 88.2 28 0.0006 34.3 17.5 76 89-179 43-120 (358)
75 TIGR00796 livcs branched-chain 87.3 34 0.00073 34.2 21.1 80 31-120 2-84 (378)
76 PRK15015 carbon starvation pro 86.9 12 0.00026 39.7 12.8 82 25-112 84-169 (701)
77 PRK09395 actP acetate permease 86.4 47 0.001 34.9 24.9 82 22-107 69-151 (551)
78 TIGR00796 livcs branched-chain 85.4 15 0.00033 36.6 12.5 130 32-179 198-331 (378)
79 TIGR02121 Na_Pro_sym sodium/pr 85.0 50 0.0011 34.0 24.4 79 22-101 36-117 (487)
80 COG1966 CstA Carbon starvation 83.7 24 0.00051 36.7 13.0 80 23-108 51-134 (575)
81 PF05525 Branch_AA_trans: Bran 79.7 16 0.00035 37.0 10.3 130 35-181 207-339 (427)
82 PRK15419 proline:sodium sympor 79.1 84 0.0018 32.6 22.4 90 8-101 28-121 (502)
83 PF05525 Branch_AA_trans: Bran 78.3 82 0.0018 32.0 16.3 78 25-110 4-84 (427)
84 COG4147 DhlC Predicted symport 73.1 1.2E+02 0.0025 31.2 22.6 145 87-248 103-293 (529)
85 PRK10484 putative transporter; 68.9 1.5E+02 0.0033 30.8 23.6 83 21-108 37-121 (523)
86 COG1953 FUI1 Cytosine/uracil/t 67.3 1.6E+02 0.0034 30.4 22.2 50 86-139 101-153 (497)
87 KOG2083 Na+/K+ symporter [Inor 66.3 77 0.0017 33.3 11.3 107 25-136 31-142 (643)
88 PRK15433 branched-chain amino 61.1 1E+02 0.0023 31.3 11.2 118 46-181 225-342 (439)
89 COG1114 BrnQ Branched-chain am 60.9 1.3E+02 0.0027 30.4 11.4 118 47-181 224-341 (431)
90 PRK15433 branched-chain amino 60.1 1.3E+02 0.0029 30.6 11.7 78 25-110 9-89 (439)
91 COG0814 SdaC Amino acid permea 59.7 18 0.00039 36.6 5.6 172 223-400 222-409 (415)
92 KOG1288 Amino acid transporter 50.5 1.9E+02 0.0042 31.2 11.1 36 210-246 314-349 (945)
93 PF01235 Na_Ala_symp: Sodium:a 44.8 3.5E+02 0.0076 27.4 16.1 55 24-79 19-77 (416)
94 PRK13183 psbN photosystem II r 39.3 39 0.00084 22.6 2.7 32 224-255 4-35 (46)
95 CHL00020 psbN photosystem II p 35.7 36 0.00077 22.4 2.1 30 226-255 3-32 (43)
96 TIGR00842 bcct choline/carniti 34.1 5.3E+02 0.012 26.4 12.0 37 87-123 119-159 (453)
97 PRK09928 choline transport pro 34.1 3.1E+02 0.0066 29.7 10.0 34 90-124 181-214 (679)
98 PF02468 PsbN: Photosystem II 31.8 37 0.00079 22.4 1.7 29 227-255 4-32 (43)
99 KOG4812 Golgi-associated prote 31.7 88 0.0019 28.9 4.7 66 328-397 163-243 (262)
100 TIGR03648 Na_symport_lg probab 31.5 6.3E+02 0.014 26.5 26.1 85 21-109 31-116 (552)
101 PF02028 BCCT: BCCT family tra 30.3 6.3E+02 0.014 26.1 13.6 89 90-188 164-255 (485)
102 PF04133 Vps55: Vacuolar prote 28.9 2.1E+02 0.0045 23.6 6.1 44 32-75 65-109 (120)
103 PRK09950 putative transporter; 28.2 7.1E+02 0.015 26.0 12.2 36 87-122 166-205 (506)
104 cd08763 Cyt_b561_CYB561 Verteb 27.2 1.3E+02 0.0028 25.5 4.9 39 374-413 38-76 (143)
105 cd08764 Cyt_b561_CG1275_like N 22.6 1.9E+02 0.0042 26.3 5.3 37 376-413 57-95 (214)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-60 Score=470.60 Aligned_cols=375 Identities=35% Similarity=0.601 Sum_probs=335.2
Q ss_pred CCCCCCCCccccccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC---CCCc
Q 046376 9 PNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP---VPGT 85 (414)
Q Consensus 9 ~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~---~~~~ 85 (414)
.+++|+|.+.+++|++||+++.+|.++.++|.|+|+||||++++||+.|+++++..+++++||..+|.+|.+. .+++
T Consensus 23 ~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~ 102 (437)
T KOG1303|consen 23 KSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK 102 (437)
T ss_pred ccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 4566888999999999999999999999999999999999999999999999999999999999999999643 3466
Q ss_pred cccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHH
Q 046376 86 RYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVV 165 (414)
Q Consensus 86 ~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpL 165 (414)
|+.+|+|+++++||++. ++++..++...+||.|++|++.++|+++.+++.++.++. ..+.+.|+++++++++|+
T Consensus 103 r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~~~~f~iif~~i~~~~ 176 (437)
T KOG1303|consen 103 RRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLDKQYFIIIFGLIVLPL 176 (437)
T ss_pred cCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----cccceehhhhHHHHHHHH
Confidence 77899999999999866 655544445567999999999999999999998776531 233578999999999999
Q ss_pred hhhccCccchhhHHHHHHHHHHHHHHHHhhhhhcc--------------------------------cceeehhhhhhCC
Q 046376 166 SQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRK--------------------------------GHNLVLEIQGTLP 213 (414)
Q Consensus 166 s~l~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~--------------------------------g~~~~~~i~~~m~ 213 (414)
+++ ||+++++|+|..++++++.|..+.++.++.+ ||+++||||++|
T Consensus 177 s~l-p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tM- 254 (437)
T KOG1303|consen 177 SQL-PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTM- 254 (437)
T ss_pred HHC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhc-
Confidence 999 9999999999999999988888777665432 799999999999
Q ss_pred CCCCCCCcccchhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhc
Q 046376 214 SSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQ 293 (414)
Q Consensus 214 ~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~syp 293 (414)
|+|++ |+|++..++.+++.+|+.+++.||++|||++++ +++.|+ +.|.|+...+|+++.+|++.+|+
T Consensus 255 ---k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~--~il~s~------~~p~~~~~~ani~i~~h~i~s~~ 321 (437)
T KOG1303|consen 255 ---KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD--NILLSL------QPPTWLIALANILIVLHLIGSYQ 321 (437)
T ss_pred ---CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch--hhhhcc------cCchhHHHHHHHHHHHHHhhhhh
Confidence 56665 889999999999999999999999999999999 999998 35789999999999999999999
Q ss_pred ccccchHHHHHHHhhhhccC--CCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376 294 IYAMPAFDSLEFRYIFKKQQ--QCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKP 370 (414)
Q Consensus 294 l~~~p~~~~le~~~~~~~~~--~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~ 370 (414)
++.+|+++.+|+....++++ +.....|.+.|+.+++.++++|+.+|+|+++++++||+.. ++++++|++||++++|+
T Consensus 322 i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~ 401 (437)
T KOG1303|consen 322 IYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKP 401 (437)
T ss_pred hhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999988765442 1234689999999999999999999999999999999999 99999999999999998
Q ss_pred CCCcchHHHHHhH-HHHHHHHHHHHHHHHHHHHHh
Q 046376 371 DQSGTLWWLNLGL-GCFGIILSVMLVVATFWNLVT 404 (414)
Q Consensus 371 ~~~~~~~~~~~~l-i~~g~~~~v~g~~~s~~~ii~ 404 (414)
++...+|+.++.+ .++|++.++....+++++++.
T Consensus 402 ~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 402 KRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred hhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8888999999999 799999999999999999875
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-52 Score=427.10 Aligned_cols=364 Identities=18% Similarity=0.207 Sum_probs=289.5
Q ss_pred cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376 22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (414)
++|+..+++||++|+++|+|+|+||+||+++||+.|++++++++.++.||.+++.+++++ .+..+|+|++++++||+
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~~sY~~la~~~~G~~ 134 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNIRTYEGVARVLLGPW 134 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHhCHH
Confidence 467778999999999999999999999999999999999999999999999999999874 23569999999999994
Q ss_pred cchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHH
Q 046376 102 LAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181 (414)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~ 181 (414)
++++..+.....++|+|++|+++.+|+++.+++.....+ .......++..+.+++.++++|++++ |++++|+|+|.+
T Consensus 135 -g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~-~~~~~~~~r~~~~~i~~~i~lPLs~~-r~i~~L~~~S~i 211 (467)
T PTZ00206 135 -GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPD-FLKQKSGNRLLTSLMWLCFMLPLVIP-RHIDSLRYVSTI 211 (467)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-hhhhccCcEEeeeehhhhHhhhcccc-cchHHHHHHHHH
Confidence 555554455556799999999999999998775311100 00001112233445566778999999 999999999999
Q ss_pred HHHHHHHHHHHHhhhhhc---------------------------c-------------cceeehhhhhhCCCCCCCCCc
Q 046376 182 GTVTAVVYVTLLWALTIR---------------------------K-------------GHNLVLEIQGTLPSSKFNPSS 221 (414)
Q Consensus 182 ~~~~~~~~~~i~~~~~~~---------------------------~-------------g~~~~~~i~~~m~~~~~~p~~ 221 (414)
|+++.+...+.+++.+.. + +|..+||++++| |||+.
T Consensus 212 ~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~ 287 (467)
T PTZ00206 212 AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSV 287 (467)
T ss_pred HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccch
Confidence 986544333332221110 0 688899999999 67888
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHH
Q 046376 222 QKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFD 301 (414)
Q Consensus 222 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~ 301 (414)
+++.+++..++.++.++|..+|++||+.||+++++ +++.|+++ ..+....+++++..++++.+||++.+|+++
T Consensus 288 ~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~--~Illn~~p-----~~~~~~~v~~~~~~~~v~~sypL~~~p~r~ 360 (467)
T PTZ00206 288 GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTG--SVLLMYDP-----VNEPAIMVGFVGVLVKLFVSYALLGMACRN 360 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccch--HHHHhCCC-----CCCchhhHHHHHHHHHHHHhhhhhhhhHHH
Confidence 88899999999999999999999999999999999 99999932 112244677888899999999999999999
Q ss_pred HHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhc---CCCCCcchH
Q 046376 302 SLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIK---KPDQSGTLW 377 (414)
Q Consensus 302 ~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~---k~~~~~~~~ 377 (414)
.+++.+..+. ++.+.+++...+..+++.++++|+++|+++.+++++||+++ .++|++|+++|++.. +++....+|
T Consensus 361 ~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~ 439 (467)
T PTZ00206 361 ALYDVIGWDA-RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYY 439 (467)
T ss_pred HHHHHhCCCc-ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHH
Confidence 9998764332 22234556666777777888999999999999999999999 999999999999842 112222345
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046376 378 WLNLGLGCFGIILSVMLVVATFWNLV 403 (414)
Q Consensus 378 ~~~~~li~~g~~~~v~g~~~s~~~ii 403 (414)
+.+++++++|++.++.|||+|+++.+
T Consensus 440 ~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 440 ISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHhheEEecchhHhhHHh
Confidence 68999999999999999999999876
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-52 Score=405.11 Aligned_cols=357 Identities=18% Similarity=0.251 Sum_probs=305.4
Q ss_pred CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC---CCCccccCHHHHHHHhc--
Q 046376 24 GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP---VPGTRYSRYMQVAKAAF-- 98 (414)
Q Consensus 24 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~---~~~~~~~sy~~l~~~~~-- 98 (414)
.|..++..|+.|+++|+|+|+||+||+++||+.|.+..++.++++.||++++++|... ..+....+|++.++.++
T Consensus 47 ~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~ 126 (449)
T KOG1304|consen 47 TSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEG 126 (449)
T ss_pred CchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcC
Confidence 4688999999999999999999999999999999999999999999999999999521 11223478888887764
Q ss_pred --------CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhcc
Q 046376 99 --------GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLP 170 (414)
Q Consensus 99 --------G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~ 170 (414)
|+ ++|.++....+..|+|.|.+|+++++++++++.+. +.....+.+.|+.+...++++++++ |
T Consensus 127 ~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~-------~~~~~~s~~~~i~~~~~~~lll~~I-r 197 (449)
T KOG1304|consen 127 GPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE-------HSPGVLSVRLYILIQLPPLLLLNLI-R 197 (449)
T ss_pred CcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc-------cCCCCccHHHHHHHHHHHHHHHHHH-H
Confidence 44 45666666667788999999999999999998862 1224456788999988999999999 9
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhhhcc----------------------------cceeehhhhhhCCCCCCCCCcc
Q 046376 171 NLNSVLKFSKTGTVTAVVYVTLLWALTIRK----------------------------GHNLVLEIQGTLPSSKFNPSSQ 222 (414)
Q Consensus 171 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~----------------------------g~~~~~~i~~~m~~~~~~p~~~ 222 (414)
|+|.|+.+|+++.+..++..++++.....+ |.+++.+++++| |+|+++
T Consensus 198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F 273 (449)
T KOG1304|consen 198 NLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKF 273 (449)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhc
Confidence 999999999999987766666655443322 789999999999 788764
Q ss_pred c-chhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHH
Q 046376 223 K-MWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFD 301 (414)
Q Consensus 223 ~-~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~ 301 (414)
. -.+++..+|.+++++|..+|.+||++|||++++ .|+.|+| + +|+.+.+++.+.+.++.+||+|.+|..+
T Consensus 274 ~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~--sITLNLP------~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~e 344 (449)
T KOG1304|consen 274 PGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKG--SITLNLP------Q-EILSQTVKLLLAIAIFLTYPLQFYVPIE 344 (449)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhccccccc--eEEecCC------c-cHHHHHHHHHHHHHHHHcCchhhhhhHH
Confidence 2 127999999999999999999999999999999 9999994 4 6888999999999999999999999999
Q ss_pred HHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCC---CcchH
Q 046376 302 SLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQ---SGTLW 377 (414)
Q Consensus 302 ~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~---~~~~~ 377 (414)
.+|+.+.+|.+.+..++....+|+.+++.+..+|.++||++.+++++||+++ ++.+++|+++|+..++++. +.+++
T Consensus 345 Ii~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~ 424 (449)
T KOG1304|consen 345 IIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKL 424 (449)
T ss_pred HHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHH
Confidence 9999877664433345678899999999999999999999999999999999 9999999999999976553 34677
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 046376 378 WLNLGLGCFGIILSVMLVVATFWNL 402 (414)
Q Consensus 378 ~~~~~li~~g~~~~v~g~~~s~~~i 402 (414)
+.|.+++++|++..+.|||+|+.++
T Consensus 425 ~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 425 IKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 8999999999999999999998753
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.6e-48 Score=393.59 Aligned_cols=362 Identities=18% Similarity=0.244 Sum_probs=289.7
Q ss_pred CCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccC----CCC--Cc--c--ccCHHH
Q 046376 23 NGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAE----PVP--GT--R--YSRYMQ 92 (414)
Q Consensus 23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~----~~~--~~--~--~~sy~~ 92 (414)
+++..++.+|+++..+|.|+|+||+||+++||+.|++.+++.++++.||++++.+|+. +.+ +. + ..+|.|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999998631 111 11 1 136899
Q ss_pred HHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCc
Q 046376 93 VAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNL 172 (414)
Q Consensus 93 l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l 172 (414)
+++..+||+++++....+... +++.|+.|++..++++..+- + ..+.+.|+++++++++|++++ |++
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~-l~~~~v~~li~~~~~~~~l~----~--------~~~~~~~~~i~~~v~~~~~~i-~sl 190 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTF-LLFGSVIQLIACASNIYYIN----D--------NLDKRTWTYIFGACCATTVFI-PSF 190 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhC----C--------CcCCCeEEeehHHHHHHHHHc-cCH
Confidence 999999997766666655554 58999999998887765431 1 123467888899999999999 999
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhh---------c----c----------------cceeehhhhhhCCCCCCCCCccc
Q 046376 173 NSVLKFSKTGTVTAVVYVTLLWALTI---------R----K----------------GHNLVLEIQGTLPSSKFNPSSQK 223 (414)
Q Consensus 173 ~~l~~~s~~~~~~~~~~~~i~~~~~~---------~----~----------------g~~~~~~i~~~m~~~~~~p~~~~ 223 (414)
|+++|+|.+|..+++.+...++..++ + + ||+++|||+++| |||++++
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F~ 266 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKFK 266 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhccc
Confidence 99999999998755432222211111 0 0 799999999999 7898754
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHH
Q 046376 224 MWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSL 303 (414)
Q Consensus 224 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~l 303 (414)
++...++..+.+.|..+|+.||++|||++.+.++.+.|+| .+.| ..+++++..++.+.+||++.+|+.+.+
T Consensus 267 --~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp------~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~ 337 (473)
T PLN03074 267 --YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP------RSGW-RDAAVILMLIHQFITFGFACTPLYFVW 337 (473)
T ss_pred --chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC------CchH-HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7888888889999999999999999998764236677773 2223 478899999999999999999999999
Q ss_pred HHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCC-----------
Q 046376 304 EFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPD----------- 371 (414)
Q Consensus 304 e~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~----------- 371 (414)
|+....+ +......|.++|+.+++.++++|..+|+|+++++++||+++ +++|++|+++|++.++++
T Consensus 338 e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~ 415 (473)
T PLN03074 338 EKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPP 415 (473)
T ss_pred HHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCc
Confidence 9976543 12235678999999999999999999999999999999999 999999999999865432
Q ss_pred --CCcch--HHHHHhHHHHHHHH-HHHHHHHHHHHHHhccccccCCC
Q 046376 372 --QSGTL--WWLNLGLGCFGIIL-SVMLVVATFWNLVTKGVHANFFS 413 (414)
Q Consensus 372 --~~~~~--~~~~~~li~~g~~~-~v~g~~~s~~~ii~~~~~~~~~~ 413 (414)
..+++ .+.|+++++++.++ .+.|+|+|+++++++.++|+.|+
T Consensus 416 ~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 416 FFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred ccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 11122 26899999876666 58999999999999999999875
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.6e-50 Score=406.37 Aligned_cols=358 Identities=27% Similarity=0.422 Sum_probs=299.3
Q ss_pred cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCC-CccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVP-GTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~-~~~~~sy~~l~~~~~G~ 100 (414)
|++|++++++|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.|+++..+ +++..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987532 34678999999999999
Q ss_pred ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHH
Q 046376 101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK 180 (414)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~ 180 (414)
++++++.....+ .++|.|++|+++.+|++..+.+...++ ...++..|.++.+++++|++++ |+++++++.|.
T Consensus 81 ~~~~~~~~~~~~-~~~g~~v~y~i~~~~~l~~~~~~~~~~------~~~~~~~~~~i~~~i~~pls~~-~~l~~l~~~s~ 152 (409)
T PF01490_consen 81 KGKWFVDICIFI-YLFGSCVAYLIIIGDSLSSLIPSFFGD------LFISRYVWIIIFALIVLPLSFL-KNLKSLRYLSI 152 (409)
T ss_pred cccccccchhee-ccccccceeEEEeeeeeeccccccccc------cccccccccccccccccccccc-chhhHHHHHhh
Confidence 766666665555 569999999999999999987654332 1234566777788889999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcc----------------------------------cceeehhhhhhCCCCCCCCCc-ccch
Q 046376 181 TGTVTAVVYVTLLWALTIRK----------------------------------GHNLVLEIQGTLPSSKFNPSS-QKMW 225 (414)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~~----------------------------------g~~~~~~i~~~m~~~~~~p~~-~~~~ 225 (414)
+|.++.+.+..+.+...... +|..+||++++| |+|++ ++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~ 228 (409)
T PF01490_consen 153 LGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMK 228 (409)
T ss_pred hhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccc
Confidence 99876543212211111100 789999999999 67777 6788
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHH
Q 046376 226 RAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEF 305 (414)
Q Consensus 226 ~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~ 305 (414)
++...++.+++++|..+|.+||++||+++++ |++.|+++ .++...++++++.++++.+||++.+|.++.+|+
T Consensus 229 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~--~il~n~~~------~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 229 KVLSISMIICFIIYLLFGIFGYLAFGDSVQG--NILLNLPN------DDVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred eeeeehhhhhhHHhhhhhhcccceeeeeecc--hhhhcCCC------cccccccccccchhhhhhccccccchhHhhhhh
Confidence 9999999999999999999999999999999 99999953 235678899999999999999999999999999
Q ss_pred Hhhhh--------ccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcch
Q 046376 306 RYIFK--------KQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTL 376 (414)
Q Consensus 306 ~~~~~--------~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~ 376 (414)
.+.++ ++++.++++|..+|++++..++++|..+|+++++++++||+++ .++|++|+++|+|.+|+++.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~ 380 (409)
T PF01490_consen 301 LLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFG 380 (409)
T ss_pred heeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccc
Confidence 87642 1222345778999999999999999999999999999999999 99999999999999877654433
Q ss_pred H-----HHHHhHHHHHHHHHHHHHHHHH
Q 046376 377 W-----WLNLGLGCFGIILSVMLVVATF 399 (414)
Q Consensus 377 ~-----~~~~~li~~g~~~~v~g~~~s~ 399 (414)
+ ..+++.+++|++.++.|++.++
T Consensus 381 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 381 WWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred eeehhhccceEEEEEeeehhHHhHHHHc
Confidence 3 3467888899999999998765
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=329.04 Aligned_cols=370 Identities=20% Similarity=0.260 Sum_probs=293.8
Q ss_pred cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376 22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (414)
++.+.+.+++|+.|+++|+|++++|+||++.|.+.|++++..+++++.++.+++.+|.+.. + ..+|++++++++|+.
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~--~~ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-G--ERTYSSLGDLIFGKL 80 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-C--CCCHHHHHHHHcCCC
Confidence 4457889999999999999999999999999999999999999999999999999998753 2 239999999999994
Q ss_pred cchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcch-hhHhHHHHHHHHhhhccCccchhhHHH
Q 046376 102 LAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVV-WCLLFICIAIVVSQLLPNLNSVLKFSK 180 (414)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~lpLs~l~~~l~~l~~~s~ 180 (414)
++............| |++|+++.+|.++.+......+++.- ..+.+++. +++....+.+||+.. |+++++++.|.
T Consensus 81 -g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~~~~~~~~ill~~~~~i~pLsl~-k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 81 -GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SHYLDRNFLILLVLLFIILPLSLL-KNLDSLKYTSA 156 (411)
T ss_pred -ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-cccccceeEeehHHHHHHHHHHHH-HhhhhHHHHHH
Confidence 554433322222255 69999999999997665433221100 00223333 566777888999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhhc------c--------------------------cceeehhhhhhCCCCCCCCCcccchhHH
Q 046376 181 TGTVTAVVYVTLLWALTIR------K--------------------------GHNLVLEIQGTLPSSKFNPSSQKMWRAV 228 (414)
Q Consensus 181 ~~~~~~~~~~~i~~~~~~~------~--------------------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~ 228 (414)
++.+....+..+++..... + +|....++++|| |||++++|+++.
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~v~ 232 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQRVS 232 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHHHH
Confidence 9987655544444433332 1 455555677777 889999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHHhh
Q 046376 229 KISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYI 308 (414)
Q Consensus 229 ~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~~~ 308 (414)
..+...+.++|..+|.+||+.|||++.+ |++.+++++.+.+-..+....++.++.++.+.++|+..+|++..+++.+.
T Consensus 233 ~~~~~~~~~iy~~~g~~GYL~Fg~~v~~--n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~ 310 (411)
T KOG1305|consen 233 NIAIILATLIYLLTGLFGYLTFGDLVKG--NLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF 310 (411)
T ss_pred HHHHHHHHHHHHHHHHhhhheecccchH--HHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 9999999999999999999999999999 99999965433221123457889999999999999999999999988776
Q ss_pred hhccC--CCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcchHHHHHhHHH
Q 046376 309 FKKQQ--QCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGC 385 (414)
Q Consensus 309 ~~~~~--~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~~~~~~~li~ 385 (414)
+++++ +.+..++.++...++..+.+.|+.+|+++++++++||+++ .++|++|+++|++.+|+ +.++....+...+
T Consensus 311 ~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~ 388 (411)
T KOG1305|consen 311 PYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLI 388 (411)
T ss_pred ccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHH
Confidence 55442 2345667788888889999999999999999999999999 99999999999999876 4445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 046376 386 FGIILSVMLVVATFWNLVTKG 406 (414)
Q Consensus 386 ~g~~~~v~g~~~s~~~ii~~~ 406 (414)
+++.++++|+..-+.++..+.
T Consensus 389 ~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 389 LGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999999988888877653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-39 Score=300.77 Aligned_cols=361 Identities=18% Similarity=0.244 Sum_probs=295.2
Q ss_pred cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC-CC-C---ccccCHHHHHHH
Q 046376 22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP-VP-G---TRYSRYMQVAKA 96 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~-~~-~---~~~~sy~~l~~~ 96 (414)
.+-+.|+|..|..|++-|-=+++||+|....||. ++..+++++.+++||+.+|++|..+ .+ | +...||.++|+.
T Consensus 115 ~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~ 193 (524)
T KOG4303|consen 115 EKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF 193 (524)
T ss_pred CccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence 3457899999999999999999999999999996 9999999999999999999999532 11 2 234689999999
Q ss_pred hcCCccc-hhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccch
Q 046376 97 AFGPKLA-KSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSV 175 (414)
Q Consensus 97 ~~G~~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l 175 (414)
+++|+.| |++..++...+ ..+|+-|++..||.|..-++. ......-|+.+.++.++|.+++ +++|..
T Consensus 194 C~~P~lGgr~V~~AQliEL-lmTCIlYvVv~gdLl~~~fP~----------~svd~~sWm~i~~a~LLpc~FL-k~Lk~V 261 (524)
T KOG4303|consen 194 CYKPGLGGRWVLAAQLIEL-LMTCILYVVVAGDLLQSCFPG----------LSVDKASWMMITSASLLPCSFL-KDLKIV 261 (524)
T ss_pred hcCCCcchheeeHHHHHHH-HHHHHhhhheechhhhccCCC----------CCccccchhhhhhHHHhhhHHH-HHHHHH
Confidence 9999866 88888776665 899999999999988764432 1223456889999999999999 999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcc------------------------------cceeehhhhhhCCCCCCCCCcccch
Q 046376 176 LKFSKTGTVTAVVYVTLLWALTIRK------------------------------GHNLVLEIQGTLPSSKFNPSSQKMW 225 (414)
Q Consensus 176 ~~~s~~~~~~~~~~~~i~~~~~~~~------------------------------g~~~~~~i~~~m~~~~~~p~~~~~~ 225 (414)
+.+|....+.-++.-++++.+|... .|..+|+++.+| ++|++++
T Consensus 262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn-- 335 (524)
T KOG4303|consen 262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN-- 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe--
Confidence 9999988877776666666666542 478889999888 7898876
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHH
Q 046376 226 RAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEF 305 (414)
Q Consensus 226 ~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~ 305 (414)
-.+.++=....++-..+|..||++|||++++ .|.+|+|+ + + ...++|++.++..+.|||+-.+.+.+.+|+
T Consensus 336 ~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tqe--vItnnLp~---q--s--fk~~VN~fLV~KALLSYPLPfyAAvelLe~ 406 (524)
T KOG4303|consen 336 VMLKWSHIAAAVFKVVFGMLGFLTFGELTQE--VITNNLPN---Q--S--FKILVNLFLVVKALLSYPLPFYAAVELLEN 406 (524)
T ss_pred eeeehHHHHHHHHHHHHHHheeeeechhhHH--HHhcCCCc---c--c--hhhhhhHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3455555567788899999999999999998 89999842 1 1 456789999999999999998888999988
Q ss_pred HhhhhccC-CCc---------hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCc
Q 046376 306 RYIFKKQQ-QCP---------RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSG 374 (414)
Q Consensus 306 ~~~~~~~~-~~~---------~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~ 374 (414)
-+....++ +++ +...+.+|.++++++.++|+.+|+|..+|+++|++++ .++|+.|++||+++..+....
T Consensus 407 nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~ 486 (524)
T KOG4303|consen 407 NLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNN 486 (524)
T ss_pred hhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhh
Confidence 76543222 111 1234678999999999999999999999999999999 999999999999996544444
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 046376 375 TLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHAN 410 (414)
Q Consensus 375 ~~~~~~~~li~~g~~~~v~g~~~s~~~ii~~~~~~~ 410 (414)
.++..+..+++.|..++|.|.|-|..++++......
T Consensus 487 ~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~ 522 (524)
T KOG4303|consen 487 FEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD 522 (524)
T ss_pred HHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence 566789999999999999999999999998765554
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-27 Score=236.64 Aligned_cols=362 Identities=17% Similarity=0.169 Sum_probs=258.0
Q ss_pred cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376 22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (414)
.+.+..++++++.++.+|+|+|++|++++..|++++++++++.+.+++++.+++.|+.++.+. ++.+|.+++++.+||+
T Consensus 7 ~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 7 KTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDYLGKK 85 (415)
T ss_pred CCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHhCcc
Confidence 345678899999999999999999999999999999999999999999999999999875432 2259999999999996
Q ss_pred cchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHH
Q 046376 102 LAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181 (414)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~ 181 (414)
++...+. .+...+|+.+.+|.+..++.+++.++..... +...+..+.+++..++.++++. ++...++..+.+
T Consensus 86 ~~~li~~-s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~------~~~~r~~~~lif~~~~~~l~~~-~~~~~lk~ts~l 157 (415)
T COG0814 86 GGILIGL-SYFFALYGLLVAYIVGIGNLLASFLGNQFGL------NPLPRKLGSLIFALVLAFLSWL-GTLAVLKITSLL 157 (415)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHhhccc------CCcchHHHHHHHHHHHHHHHHh-chhHHHHHHHHH
Confidence 5555554 4555679999999999999999988753332 1134566777788888889999 999999999988
Q ss_pred HHHHHHHHHHHHhhhhh---------------cc----------------cceeehhhhhhCCCCCCCCCcccchhHHHH
Q 046376 182 GTVTAVVYVTLLWALTI---------------RK----------------GHNLVLEIQGTLPSSKFNPSSQKMWRAVKI 230 (414)
Q Consensus 182 ~~~~~~~~~~i~~~~~~---------------~~----------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 230 (414)
.........+....... .+ +|..+|+++++|+ ++++++.+|+...
T Consensus 158 ~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~----~~~~~~~~k~~~~ 233 (415)
T COG0814 158 VFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMR----KNSKKAVRKAILI 233 (415)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhc----cchhHHHHHHHHH
Confidence 86554333222221100 11 7999999999994 4555468899999
Q ss_pred HHHHHHHHHhhhhhhhccccCcccCCccccccccccccC-------CCCcchHHHHHHHHHHHHHhhhhcccccchHHHH
Q 046376 231 SYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHG-------HDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSL 303 (414)
Q Consensus 231 ~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g-------~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~l 303 (414)
+..+..++|...+.++|..+|+.+.+ +++++.+++.+ .....+.....+++..+.+..||--.....++.+
T Consensus 234 ~~~~~~vlyi~~~~~~~~~~~~~~~~--~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~ 311 (415)
T COG0814 234 GSLIALVLYILVGFFVFGCFGSLVFG--NILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHH--HHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence 99999999999999999999999998 99999843211 0011112233344444544444433333444555
Q ss_pred HHHhhh--hccCCCc-hhhH-HHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcchHH
Q 046376 304 EFRYIF--KKQQQCP-RRVR-AAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWW 378 (414)
Q Consensus 304 e~~~~~--~~~~~~~-~~~r-~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~~~ 378 (414)
++.+.+ .++++.. ..+. .......+.....++...|..+.+++.+|+... .+.++.|...+.+....+..+.++.
T Consensus 312 ~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~ 391 (415)
T COG0814 312 ADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFL 391 (415)
T ss_pred hHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCch
Confidence 544432 1111111 1122 222223445667778889999999999999999 9999999999887754443332224
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 046376 379 LNLGLGCFGIILSVMLVVAT 398 (414)
Q Consensus 379 ~~~~li~~g~~~~v~g~~~s 398 (414)
...+++++|+..+....++.
T Consensus 392 ~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 392 LLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67777777777766655543
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.86 E-value=7.1e-20 Score=181.12 Aligned_cols=326 Identities=14% Similarity=0.090 Sum_probs=222.0
Q ss_pred ccccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 19 TASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 19 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
.++++++.+++++-+..+.+|+|+|+||.+-+..|+.+++++++++.+...||..+++|.+.+. ++..++..++|+.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~--~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY--RIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHc
Confidence 3556788999999999999999999999999999999999999999999999999999997643 23578999999999
Q ss_pred CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhh-ccCccchhh
Q 046376 99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQL-LPNLNSVLK 177 (414)
Q Consensus 99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l-~~~l~~l~~ 177 (414)
|| .++++..+.++.+.|+.+++|+--.|+.+++.++. .+. ..+.+.-.++++++.-...+. .|..++...
T Consensus 84 G~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~-------~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~ 154 (414)
T PRK10483 84 GK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSL-------NVPARAAGFGFALLVAFVVWLSTKAVSRMTA 154 (414)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCC-------CCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99 46677777777788999999999999999887754 111 112222223334333333332 011222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc-----------------------------ccceeehhhhhhCCCCCCCCCcccchhHH
Q 046376 178 FSKTGTVTAVVYVTLLWALTIR-----------------------------KGHNLVLEIQGTLPSSKFNPSSQKMWRAV 228 (414)
Q Consensus 178 ~s~~~~~~~~~~~~i~~~~~~~-----------------------------~g~~~~~~i~~~m~~~~~~p~~~~~~~~~ 228 (414)
.-..+.+..++..+......+. ..|+++|++.+.++ +|+ ++.+|++
T Consensus 155 ~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~--~kir~~I 229 (414)
T PRK10483 155 IVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDP--KTIVKCL 229 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCH--HHHHHHH
Confidence 2122211111111111100000 07899999998884 233 3678999
Q ss_pred HHHHHHHHHHHhh--hhhhhccc---------cCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhccccc
Q 046376 229 KISYMTIGMCSFP--LALTGYWA---------YGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAM 297 (414)
Q Consensus 229 ~~~~~~~~~~Y~~--~g~~gy~~---------fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~ 297 (414)
..+..+..++|+. ..+.|-.. -|++++ ..++.+. +..+..+...+...+..+.+.+||--...
T Consensus 230 ~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~---~L~~~l~---~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~L 303 (414)
T PRK10483 230 VYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID---VLVQALS---GVLNSRSLDLLLVVFSNFAVASSFLGVTL 303 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH---HHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 33333222 122221 2223332 11233355567788888899999988888
Q ss_pred chHHHHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccccchhhhhhhhhhhhcCC
Q 046376 298 PAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTLPFKFSYPCLMYNLIKKP 370 (414)
Q Consensus 298 p~~~~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~~l~filP~l~~l~~~k~ 370 (414)
.++|.+++.++.+++.+ .|...-.+..+.+.++|.+.|+ |=..+++.|..+..+..++|+++.+|.||+
T Consensus 304 GL~d~l~D~~k~~~~~~----~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 304 GLFDYLADLFGFDDSAM----GRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHhCCCCccc----cceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999988776543211 2333334566889999999998 778999999774477889999999999875
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.85 E-value=1.4e-19 Score=180.14 Aligned_cols=324 Identities=19% Similarity=0.181 Sum_probs=214.2
Q ss_pred CCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCcc
Q 046376 23 NGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKL 102 (414)
Q Consensus 23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~ 102 (414)
+.+.+++++-+..+.+|+|+|+||.+.+..|..+++++++++...++++..++.|...+. ++..+|.+++++.+||+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~--~~~~~~~~~a~~~lG~~- 78 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT--PEGSSLTSMAEKYLGKK- 78 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHhChH-
Confidence 456788999999999999999999999999999999999999999999999999997543 23579999999999995
Q ss_pred chhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhc-cCccchhhHHHH
Q 046376 103 AKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLL-PNLNSVLKFSKT 181 (414)
Q Consensus 103 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~-~~l~~l~~~s~~ 181 (414)
++++..+.++...|+.+++|....++.+++.++...+. ..+.+.-.+++.++.-.+.... |-.++....-..
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~-------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~ 151 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT-------DLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVF 151 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555556666779999999999999998877653211 1112222222322222222220 111221111111
Q ss_pred HHHHHHHHHHHHhhhhh------------cc----------------cceeehhhhhhCCCCCCCCCcccchhHHHHHHH
Q 046376 182 GTVTAVVYVTLLWALTI------------RK----------------GHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYM 233 (414)
Q Consensus 182 ~~~~~~~~~~i~~~~~~------------~~----------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~ 233 (414)
+.+..+....+...... .+ .|+++|++.+.++ +| .++.+|++..+..
T Consensus 152 ~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d--~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 152 GMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GD--PKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---cc--HHHHHHHHHHHHH
Confidence 11111111111111000 00 6899999999884 23 3456799999988
Q ss_pred HHHHHHhhh--hhhhcc---------ccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHH
Q 046376 234 TIGMCSFPL--ALTGYW---------AYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDS 302 (414)
Q Consensus 234 ~~~~~Y~~~--g~~gy~---------~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~ 302 (414)
+..++|++. .++|-. .-+++.+ .+...+. ...++.+...+..++..+.+.+||--...-++|.
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~---~~~~~~~---~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~ 300 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVS---ALVSALA---NVSGSPWISILGSIFAFFAIATSFLGVYLGLFDF 300 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChH---HHHHHHH---hhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888764 333311 1122222 2222221 1123345566778899999999998888888999
Q ss_pred HHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccc-cchhhhhhhhhhhhcCCCC
Q 046376 303 LEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQ 372 (414)
Q Consensus 303 le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~ 372 (414)
+++.++.+ ++. ..|...-....+.+.++|...|+ |-..+++.| ... .+..++|+++.+|.||+++
T Consensus 301 l~d~~k~~-~~~---~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 301 LADLFKLK-NNS---SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHcCC-ccc---cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 98877542 222 22333344456778888999997 788999999 777 9999999999999976554
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.85 E-value=1.6e-19 Score=178.48 Aligned_cols=325 Identities=14% Similarity=0.078 Sum_probs=218.0
Q ss_pred cccccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHh
Q 046376 18 LTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAA 97 (414)
Q Consensus 18 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~ 97 (414)
+.|++ .+.+.+++-+..+.+|+|+|+||.+-+..|+.+++++++++.+...||..+++|.+.+. ++..++..++|+.
T Consensus 4 ~~~~~-~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~--~~g~~l~tma~~~ 80 (415)
T PRK09664 4 QAEKK-HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY--PVGSSFNTITKDL 80 (415)
T ss_pred chhhc-cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHH
Confidence 33444 47778999999999999999999999999999999999999999999999999997644 2457899999999
Q ss_pred cCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhcc--Cccch
Q 046376 98 FGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLP--NLNSV 175 (414)
Q Consensus 98 ~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~--~l~~l 175 (414)
+|| .++++..+.++.+.|+.+++|+--.|+.+++.++...+. ..+.+.-.++++++.-...+. . ..++.
T Consensus 81 LG~-~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~-------~i~~~~~~llF~~~~~~~v~~-gt~~vd~~ 151 (415)
T PRK09664 81 IGN-TWNIISGITVAFVLYILTYAYISANGAIISETISMNLGY-------HANPRIVGICTAIFVASVLWI-SSLAASRI 151 (415)
T ss_pred cCh-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC-------CCcHHHHHHHHHHHHHHHHHh-chhHHHHH
Confidence 999 577777777777789999999999999998877532111 111122223333333333332 1 11111
Q ss_pred hhHHHHHHHHHHHHHHHHh--------------------------------hhhhcccceeehhhhhhCCCCCCCCCccc
Q 046376 176 LKFSKTGTVTAVVYVTLLW--------------------------------ALTIRKGHNLVLEIQGTLPSSKFNPSSQK 223 (414)
Q Consensus 176 ~~~s~~~~~~~~~~~~i~~--------------------------------~~~~~~g~~~~~~i~~~m~~~~~~p~~~~ 223 (414)
...-..+.+..++..+... ..+.. .|+++|++.+.++ +|+ ++
T Consensus 152 nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFg-fh~iIPsl~~y~~---~d~--~~ 225 (415)
T PRK09664 152 TSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFG-FHGNIPSLIICYG---KRK--DK 225 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhh-CCCcchHHHHHhC---ccH--HH
Confidence 1111111111111111100 00111 6899999998874 333 34
Q ss_pred chhHHHHHHHHHHHHHhh--hhhhhcc---------ccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhh
Q 046376 224 MWRAVKISYMTIGMCSFP--LALTGYW---------AYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQF 292 (414)
Q Consensus 224 ~~~~~~~~~~~~~~~Y~~--~g~~gy~---------~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sy 292 (414)
.+|++.....+..++|+. ..++|-. .-|++++ .++..+.+ .....+...+...+..+.+.+||
T Consensus 226 ~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~---~l~~s~~~---~~~~~~i~~~~~~Fa~~Ai~TSF 299 (415)
T PRK09664 226 LIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD---SLVKSFLG---TKQHGIIEFCLLVFSNLAVASSF 299 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch---HHHHHHHh---hccChHHHHHHHHHHHHHHHHHH
Confidence 568888888888888855 2233311 2233333 23333321 12334666778888889999999
Q ss_pred cccccchHHHHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccccchhhhhhhhhhhhcCC
Q 046376 293 QIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTLPFKFSYPCLMYNLIKKP 370 (414)
Q Consensus 293 pl~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~~l~filP~l~~l~~~k~ 370 (414)
--....++|.+++.++.+++++ .|...-.+..+.+.++|.+.|+ |=..++..|..+..+.-++|+++-+|.||+
T Consensus 300 lGv~LGL~D~l~D~~~~~~~~~----~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 300 FGVTLGLFDYLADLFKIDNSHG----GRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCccc----cceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888889999988776543221 2333334566889999999998 778999999964488889999999999875
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.84 E-value=6.4e-19 Score=174.89 Aligned_cols=345 Identities=19% Similarity=0.146 Sum_probs=226.2
Q ss_pred CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376 24 GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA 103 (414)
Q Consensus 24 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (414)
++.+.+++.+..+.+|+|+|+||.+.+..|+++++++++++..+..|++.++.|++.+. ++..++.+++|+.+||+ +
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~--~~~~~~~~~a~~~LG~~-g 79 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV--PADTGLGTLAKRYLGRY-G 79 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHhChH-H
Confidence 35678999999999999999999999999999999999999998999999999986543 23468999999999995 5
Q ss_pred hhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHH---H
Q 046376 104 KSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFS---K 180 (414)
Q Consensus 104 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s---~ 180 (414)
.++..+.++...|..+.+|....|+.+.+..+...+++ .+.+...+++.++.-...+. ..|...+.+ .
T Consensus 80 ~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~-------i~~~~~~l~F~~~~~~iv~~--g~~~v~~~n~~L~ 150 (403)
T PRK15132 80 QWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS-------MSPTAGVLLFTLVAGGVVCV--GTSSVDLFNRFLF 150 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC-------CChHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 55666666777799999999999999888776533321 11222333333332222222 112221111 1
Q ss_pred HHHHHHHHHHHHHhhh--------------------------hhcccceeehhhhhhCCCCCCCCCcccchhHHHHHHHH
Q 046376 181 TGTVTAVVYVTLLWAL--------------------------TIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMT 234 (414)
Q Consensus 181 ~~~~~~~~~~~i~~~~--------------------------~~~~g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~ 234 (414)
.+.+..++........ +.. .|+++|++.+.++ .+.++.+|++..+..+
T Consensus 151 ~~~ii~~~~~~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFg-fh~iIpsl~~y~~-----~~~~~~~k~i~~Gs~i 224 (403)
T PRK15132 151 SAKIIFLVVMLALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFG-FHGSVPSIVSYMG-----GNIRKLRWVFIIGSAI 224 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhh-CCcccHHHHHHhC-----cCHHHHHHHHHHHHHH
Confidence 1111111111111100 000 7899999999883 2335678999999999
Q ss_pred HHHHHhhhhhhhccccCcc-----cCC---ccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHH
Q 046376 235 IGMCSFPLALTGYWAYGNK-----VTA---KEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFR 306 (414)
Q Consensus 235 ~~~~Y~~~g~~gy~~fG~~-----~~~---~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~ 306 (414)
..++|+..=......-+.+ .++ .+++++.+... .+..|...+...+..+.+.+||--....++|.+++.
T Consensus 225 ~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~ 301 (403)
T PRK15132 225 PLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREV---VASPHVELAVHLFADLALATSFLGVALGLFDYLADL 301 (403)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998876333322222211 111 01344444321 233466677888888899999988888899999887
Q ss_pred hhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccccchhhhhhhhhhhhcCCC-CCcc----hHHHH
Q 046376 307 YIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTLPFKFSYPCLMYNLIKKPD-QSGT----LWWLN 380 (414)
Q Consensus 307 ~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~~l~filP~l~~l~~~k~~-~~~~----~~~~~ 380 (414)
+.+++++ ..|...-.+..+.+.++|...|+ |...+++.|.....+.+++|+++.+|.||++ +.+. .+..+
T Consensus 302 ~~~~~~~----~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~ 377 (403)
T PRK15132 302 FQRRNTV----GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPAL 377 (403)
T ss_pred HccCccc----cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHH
Confidence 7543221 12444445567888999999998 8888999887533999999999999998654 2121 24456
Q ss_pred HhHHHHHHHHHHH
Q 046376 381 LGLGCFGIILSVM 393 (414)
Q Consensus 381 ~~li~~g~~~~v~ 393 (414)
++..++|++.-+.
T Consensus 378 ~~v~~~G~~~i~~ 390 (403)
T PRK15132 378 ALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666554443
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.83 E-value=2.5e-19 Score=178.68 Aligned_cols=317 Identities=14% Similarity=0.096 Sum_probs=214.8
Q ss_pred hhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhh
Q 046376 29 TVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCV 108 (414)
Q Consensus 29 a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~ 108 (414)
+++.++++++|+|++++|.+++..|+..+.+++++.+..+.++...+.|+..+.| +..+|.+.+++++||+.+....+
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p--~~~~~~~~~~~~~G~~~g~~~~~ 79 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP--GGASFNTIAKDLLGKTGNIIAGL 79 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHhCHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999976543 34689999999999965555544
Q ss_pred HhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHHHHHHHHH
Q 046376 109 FPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVV 188 (414)
Q Consensus 109 ~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~~~~~~~~ 188 (414)
.. ...++..+.+|.+..++.+..+++..... ..+.+...+++.+++.++.. +..+...+++.+.+...+.
T Consensus 80 ~~-~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~v~~~l~~--~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 80 SL-LFVLYILTYAYISGGGSILSRLIGEYFGF-------PWSARAIVLIFTVLFGSFVW--LSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HH-HHHHHHHHHHHHHccHHHHHHHHHHhcCC-------CccHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHH
Confidence 44 44569999999999999988877642221 11222333334444444433 3566666666555443332
Q ss_pred HHHHHhhhhhcc-------------------------------cceeehhhhhhCCCCCCCCCcccchhHHHHHHHHHHH
Q 046376 189 YVTLLWALTIRK-------------------------------GHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGM 237 (414)
Q Consensus 189 ~~~i~~~~~~~~-------------------------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~ 237 (414)
...+....+..+ .|.++|++.+++ +|+ +|+++|++..+..++++
T Consensus 150 ~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~ 224 (381)
T TIGR00837 150 AFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALV 224 (381)
T ss_pred HHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHH
Confidence 222111111110 345677777777 445 56789999999999999
Q ss_pred HHhhhhhhhccccCcccCC-----c---cccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHHhhh
Q 046376 238 CSFPLALTGYWAYGNKVTA-----K---EGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIF 309 (414)
Q Consensus 238 ~Y~~~g~~gy~~fG~~~~~-----~---~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~~~~ 309 (414)
+|...........+.+.-. . ++.++.+.. ..+..|...+...+..+.+..|+.-.....++.+++.+.+
T Consensus 225 lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~ 301 (381)
T TIGR00837 225 LYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQG---VLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKF 301 (381)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9998765554444322110 0 011112210 0123355567788888899999998888889888877665
Q ss_pred hccCCCchhhHHHHHHHHHHHHHHHHHHcCCch-hhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376 310 KKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFP-SLAPFMGGLTL-PFKFSYPCLMYNLIKKP 370 (414)
Q Consensus 310 ~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~-~v~~l~Ga~~~-~l~filP~l~~l~~~k~ 370 (414)
+++++ +|.....+..+...++|.+.|+.. ..++..| +.. .+.+++|+++++|.||+
T Consensus 302 ~~~~~----~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 302 DDSKK----GRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred CcccC----CCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 32221 234444555677888899999865 8899999 667 99999999999998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.69 E-value=1e-14 Score=144.60 Aligned_cols=352 Identities=11% Similarity=0.091 Sum_probs=209.9
Q ss_pred hHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhH
Q 046376 30 VFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVF 109 (414)
Q Consensus 30 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~ 109 (414)
...+..+.+|+|+|+||-.....|..+.+++++++..+++|+...+.|.....+ ++..+|.+++|+.+|++++.+....
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-NPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCCHHHHHHHHcChhHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999864321 2456899999999999766655544
Q ss_pred hHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhcc-CccchhhHHHHHHHHHH-
Q 046376 110 PVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLP-NLNSVLKFSKTGTVTAV- 187 (414)
Q Consensus 110 ~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~-~l~~l~~~s~~~~~~~~- 187 (414)
++...|..+.+|.....+.++.......+. ...+++...+++.+++.......+ -+.+..-.-....+.++
T Consensus 104 -Yff~ly~ll~aY~~~itn~l~sfl~~ql~~------~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 104 -YFFAICPLLWIYGVTITNTFMTFWENQLGF------APLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhcCc------CCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445569999999977777666533221110 011222222222222222211100 01111100001100000
Q ss_pred -----------------------------------HHHHHHhhhhhcccceeehhhhhhCCCCCC---CCC--cccchhH
Q 046376 188 -----------------------------------VYVTLLWALTIRKGHNLVLEIQGTLPSSKF---NPS--SQKMWRA 227 (414)
Q Consensus 188 -----------------------------------~~~~i~~~~~~~~g~~~~~~i~~~m~~~~~---~p~--~~~~~~~ 227 (414)
....-++..++. .|+.+|++....+++++ +++ .++.+|+
T Consensus 177 ~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~-f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri 255 (443)
T PRK13629 177 LISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFN-FSPIVSSFVVSKREEYEKDFGRDFTERKCSQI 255 (443)
T ss_pred HHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence 001111111111 67888888777544332 234 5677899
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCccc-----CCccccccccccccCCC-Cc-----chHHHHHHHHHHHHHhhhhcccc
Q 046376 228 VKISYMTIGMCSFPLALTGYWAYGNKV-----TAKEGLLSVFSQVHGHD-TS-----RGAMGSIYLLQIINCLCQFQIYA 296 (414)
Q Consensus 228 ~~~~~~~~~~~Y~~~g~~gy~~fG~~~-----~~~~~il~~~~~~~g~~-~~-----~~~~~i~~~~~~i~~~~sypl~~ 296 (414)
+..+..+..++|++.-..+-..-+++. ++-.++++.+.+..+.. +. .+...+..++..+.+..||--..
T Consensus 256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~ 335 (443)
T PRK13629 256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY 335 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888876655544444322 11013344432211110 11 23455566777778888998888
Q ss_pred cchHHHHHHHhhh---hc-cCCCc-hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376 297 MPAFDSLEFRYIF---KK-QQQCP-RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKP 370 (414)
Q Consensus 297 ~p~~~~le~~~~~---~~-~~~~~-~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~ 370 (414)
..++|.++....+ +. +++.+ +..+.....+.++.++.+|..=|++=++++-+|+--. .+.|++|...-.|...-
T Consensus 336 LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l 415 (443)
T PRK13629 336 LGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL 415 (443)
T ss_pred HHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH
Confidence 8889888877632 11 11122 2223333445556677777887887777776666555 88899999888777433
Q ss_pred CCCcchHHHHHhHHHHHHHHH
Q 046376 371 DQSGTLWWLNLGLGCFGIILS 391 (414)
Q Consensus 371 ~~~~~~~~~~~~li~~g~~~~ 391 (414)
++++- +..|+++.+.|++.-
T Consensus 416 ~~yr~-~~~n~fv~~~Gl~~i 435 (443)
T PRK13629 416 AKYRG-RLDNVFVTVIGLLTI 435 (443)
T ss_pred HHhCC-CchhHHHHHHHHHHH
Confidence 33322 225777777776643
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.65 E-value=5.2e-15 Score=147.27 Aligned_cols=345 Identities=13% Similarity=0.105 Sum_probs=204.6
Q ss_pred hHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhH
Q 046376 30 VFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVF 109 (414)
Q Consensus 30 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~ 109 (414)
.+.+..+.+|+|+|++|...++.||+..++..++...+++++..++.|.....+. +..++.|++++.|||++|+.....
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G~ii~~l 87 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWGILITLL 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHHHHHHHH
Confidence 7889999999999999999999999988888888888888998888887432211 246899999999999888877766
Q ss_pred hHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHHHHHHHHHH
Q 046376 110 PVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVY 189 (414)
Q Consensus 110 ~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~~~~~~~~~ 189 (414)
-.+.. +..+.+|....++.+.......... +. +.+....+..+..+-.... ...+.+...+-+-....+..
T Consensus 88 Y~~~~-~~i~~aY~~~~~~~~~~fl~~~~~~------~~-p~~~i~~lilv~il~~iv~-~G~~~i~r~~~il~~~~ii~ 158 (397)
T TIGR00814 88 YFFAI-YPILLIYSVAITNDSASFLVNQLGT------AP-PLRGLLSLALILILVAIMS-FGEKLLFKIMGPLVFPLVLI 158 (397)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC------CC-cHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHH
Confidence 55544 8888899988888877765532211 01 1121111111111111112 23344333332221111111
Q ss_pred HHHHhhhhhcc-------------------------------cceeehhhhhhCCCCCCCCC--cccchhHHHHHHHHHH
Q 046376 190 VTLLWALTIRK-------------------------------GHNLVLEIQGTLPSSKFNPS--SQKMWRAVKISYMTIG 236 (414)
Q Consensus 190 ~~i~~~~~~~~-------------------------------g~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~~~~~~~ 236 (414)
..+.....+++ +|.++|+...+.++++++|+ +++.+|++..+..+..
T Consensus 159 l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 159 LVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 11111000000 78888888633332234343 5667899999999988
Q ss_pred HHHhhhhhhhccccCccc-CC--ccc--cccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHHhhh-h
Q 046376 237 MCSFPLALTGYWAYGNKV-TA--KEG--LLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIF-K 310 (414)
Q Consensus 237 ~~Y~~~g~~gy~~fG~~~-~~--~~~--il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~~~~-~ 310 (414)
++|+..-.......+.+. .+ .+| .+..+.+ ..+..+...+...+..+.+..||--....+++.+++.+.+ +
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~---~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~ 315 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLAN---HFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSL 315 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 888876665555554332 11 012 2222211 1122244455667777788888888888889988887632 1
Q ss_pred cc--CCCc-hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcchHHHHHhHHHH
Q 046376 311 KQ--QQCP-RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCF 386 (414)
Q Consensus 311 ~~--~~~~-~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~~~~~~~li~~ 386 (414)
++ ++.+ +..+.....+.++.++.+|..=|++=++++-+|+--. .+.|++|...-.|...-++++-+ +.|+++.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~-~~~~fv~~~ 394 (397)
T TIGR00814 316 KMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR-ISNVFVTVI 394 (397)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC-cchheeEee
Confidence 11 1122 2222333334456677777777887777775555555 88899999887777433333222 246666655
Q ss_pred HH
Q 046376 387 GI 388 (414)
Q Consensus 387 g~ 388 (414)
|+
T Consensus 395 g~ 396 (397)
T TIGR00814 395 GL 396 (397)
T ss_pred ec
Confidence 53
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.01 E-value=1.2e-07 Score=96.36 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=63.2
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
++|+-+.++++...+++++|+|++.+|..+++.|- .+++..++.+++.........|...+.|. .-..-.-+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~--~GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK--SGGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCchHHHHHHHcC
Confidence 35667889999999999999999999999998886 46666666666666666666776533322 1223445668899
Q ss_pred CccchhhhhHhH
Q 046376 100 PKLAKSLCVFPV 111 (414)
Q Consensus 100 ~~~~~~~~~~~~ 111 (414)
|..+....+...
T Consensus 81 ~~~gf~~gw~~~ 92 (438)
T PRK10655 81 KSGNFMANYTYG 92 (438)
T ss_pred cchHHHHHHHHH
Confidence 977766666543
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.88 E-value=8.4e-07 Score=90.47 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=58.3
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCc-cccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGT-RYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~-~~~sy~~l~~~~~ 98 (414)
++|+-+.++++...+++++|+|++.+|...++.|.. .+...++.++...-......|.....|.. ....| +++.+
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~---~~~~~ 81 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAY---ARRCF 81 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHH---HHHHc
Confidence 456678889999999999999999999998887742 33344444444444455556664433321 12334 77889
Q ss_pred CCccchhhhhHhH
Q 046376 99 GPKLAKSLCVFPV 111 (414)
Q Consensus 99 G~~~~~~~~~~~~ 111 (414)
||..+....+...
T Consensus 82 g~~~gf~~gw~~~ 94 (445)
T PRK10644 82 GPFLGYQTNVLYW 94 (445)
T ss_pred CchHHHHHHHHHH
Confidence 9977776655444
No 18
>PRK11021 putative transporter; Provisional
Probab=98.77 E-value=6.2e-06 Score=83.15 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=57.4
Q ss_pred ceehhhHHHHhhhhhhhhchhHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376 25 NTFSTVFHIVSSGIGIQALFLPVGFATL-GWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA 103 (414)
Q Consensus 25 s~~~a~~~l~~~~iG~GiL~LP~af~~~-G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (414)
++|+++.-.+++++|+|++.+|....+. |- ..++..++.++..........|...+.|+. -..-.-+++.+||+++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a--GG~y~y~~~~~G~~~g 78 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA--GGPAHFVGMAFGPRLG 78 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHhHHHHhCchhH
Confidence 4578888999999999999999875554 53 355556666666666666666665443321 2334566788999888
Q ss_pred hhhhhHhHH
Q 046376 104 KSLCVFPVW 112 (414)
Q Consensus 104 ~~~~~~~~~ 112 (414)
....+....
T Consensus 79 f~~gw~~~~ 87 (410)
T PRK11021 79 RVTGWLFLS 87 (410)
T ss_pred HHHHHHHHH
Confidence 777665543
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.76 E-value=2.2e-06 Score=88.02 Aligned_cols=87 Identities=21% Similarity=0.083 Sum_probs=57.0
Q ss_pred CCceehhhHHHHhhhhhhhhchhHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--cccCHHHHHHHhcC
Q 046376 23 NGNTFSTVFHIVSSGIGIQALFLPVGFAT-LGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGT--RYSRYMQVAKAAFG 99 (414)
Q Consensus 23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~--~~~sy~~l~~~~~G 99 (414)
+-+.++.+...+++++|+|++.+|....+ .|....++..++.++..........|...+.|+. ....| +++.||
T Consensus 2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~fG 78 (468)
T TIGR03810 2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGFG 78 (468)
T ss_pred CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHcC
Confidence 45677888999999999999999988554 4533233445555555555666666665443321 23344 788999
Q ss_pred CccchhhhhHhHH
Q 046376 100 PKLAKSLCVFPVW 112 (414)
Q Consensus 100 ~~~~~~~~~~~~~ 112 (414)
|..+....+...+
T Consensus 79 ~~~gf~~gw~~w~ 91 (468)
T TIGR03810 79 PFMGFISAWGYWL 91 (468)
T ss_pred cHHHHHHHHHHHH
Confidence 9777766665443
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.75 E-value=4.3e-06 Score=85.05 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=66.9
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
++|+-+.++.+.-.+++++|+|++.+|...++.|-. .+...++.++..........|...+.|.. -..-+-+++ +|
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~--GG~y~y~~~-~g 78 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQ--GGPIAYAGE-IS 78 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHH-HC
Confidence 456678889999999999999999999999988853 44455555555555555566665443322 122233456 68
Q ss_pred CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHH
Q 046376 100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLETL 133 (414)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~ 133 (414)
|.++....+.-.... +....++.+...+.+...
T Consensus 79 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~y~~~~ 111 (435)
T PRK10435 79 PAFGFQTGVLYYHAN-WIGNLAIGITAVSYLSTF 111 (435)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 877766655433222 233344444444555443
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.75 E-value=2.2e-06 Score=88.08 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=68.8
Q ss_pred ccCCceehhhHHHHhhhhhhhhchhHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWT-WGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
+|+-+.+++++..+++++|+|++.+|....+.|=. ..++..++.++..........|...+.|++ .-..-+-+++.+|
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~-sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL-DGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCChhhhHHhHcc
Confidence 45678899999999999999999999998765422 123334444555555555556665433320 1123335588899
Q ss_pred CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHH
Q 046376 100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYK 135 (414)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 135 (414)
|..+....+...... .....++.....+.+..+++
T Consensus 85 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~p 119 (473)
T TIGR00905 85 PYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGYFFP 119 (473)
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 987877776554332 23344454444455555443
No 22
>TIGR00909 2A0306 amino acid transporter.
Probab=98.74 E-value=1.7e-06 Score=87.75 Aligned_cols=111 Identities=17% Similarity=0.070 Sum_probs=70.4
Q ss_pred ccCCceehhhHHHHhhhhhhhhchhHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFAT-LGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
+|+-+.++.++-.+++++|+|++.+|..... .|. .+.+..++.++..........|...+.|+. -..-+-.++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~--Gg~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA--GSPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CcceeeHHHHhC
Confidence 3556788899999999999999999976553 444 244445555666666666666665443321 122345567899
Q ss_pred CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHH
Q 046376 100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYK 135 (414)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 135 (414)
|+.+....+...+.. ...+..+....++.+..+++
T Consensus 79 ~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~~ 113 (429)
T TIGR00909 79 ELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFLP 113 (429)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 987877776654432 33444556666666666554
No 23
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.73 E-value=4.1e-06 Score=86.02 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=63.5
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
.+|+-+.++...-.+++++|+|++-.|. +++++|. ..+...++.+++......-+.|.... +....++.+.+++.+
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~--~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS--NLEYKSFSDFASDLL 94 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcHHHHHHHHh
Confidence 4566788889999999999999999766 7788887 34555555566665555556666432 122335678899999
Q ss_pred CCccchhhhhHhHH
Q 046376 99 GPKLAKSLCVFPVW 112 (414)
Q Consensus 99 G~~~~~~~~~~~~~ 112 (414)
|+..+....+...+
T Consensus 95 g~~~gf~~gW~~~~ 108 (469)
T PRK11049 95 GPWAGYFTGWTYWF 108 (469)
T ss_pred CcHHHHHHHHHHHH
Confidence 99777777766544
No 24
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.70 E-value=4.1e-06 Score=85.59 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=72.8
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLP-VGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
.+|+-+.++..+..+++++|+|++.+| .+.+.+|-. +.+..++.+++....+..+.|...+.|. .-.+-+.+++.+
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~~ 86 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDAI 86 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHh
Confidence 456677888999999999999999999 667788863 6666666777777677777777544332 234567788999
Q ss_pred CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376 99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLE 131 (414)
Q Consensus 99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 131 (414)
||..+....+...... ...+.+.....++.++
T Consensus 87 g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~ 118 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQ 118 (452)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9977776666544332 2333334444444443
No 25
>PRK15049 L-asparagine permease; Provisional
Probab=98.67 E-value=5.9e-06 Score=85.45 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=62.7
Q ss_pred cCCceehhhHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|+-+.++..+--+.+++|+|++..|. +.+.+|- .+++..++.+++....+.-+.|.....|. .-..-+-+++.+|+
T Consensus 28 r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G~ 104 (499)
T PRK15049 28 KAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLGE 104 (499)
T ss_pred ccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhCc
Confidence 34567888899999999999998887 6777785 45666666677777777777777544332 23556677888999
Q ss_pred ccchhhhhHhHH
Q 046376 101 KLAKSLCVFPVW 112 (414)
Q Consensus 101 ~~~~~~~~~~~~ 112 (414)
+.+..+.+...+
T Consensus 105 ~~gf~~GW~~~l 116 (499)
T PRK15049 105 KAAYVAGWMYFI 116 (499)
T ss_pred HhHHHHHHHHHH
Confidence 777766665443
No 26
>PRK10249 phenylalanine transporter; Provisional
Probab=98.67 E-value=6.5e-06 Score=84.26 Aligned_cols=101 Identities=12% Similarity=-0.084 Sum_probs=68.9
Q ss_pred CCCCCCCCCccc--cccCCceehhhHHHHhhhhhhhhchhHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 046376 8 QPNSLDDWLPLT--ASRNGNTFSTVFHIVSSGIGIQALFLPVGF-ATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPG 84 (414)
Q Consensus 8 ~~~~~~~~~~~~--~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~ 84 (414)
..++.|+-.++. -+|+-+.++..+-.+.+++|+|++..|... +++|- ..++..++.+++....+.-+.|...+.|.
T Consensus 5 ~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~ 83 (458)
T PRK10249 5 STVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV 83 (458)
T ss_pred cccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334444444443 335567788899999999999999988664 45575 36666666777777777777777654432
Q ss_pred ccccCHHHHHHHhcCCccchhhhhHhH
Q 046376 85 TRYSRYMQVAKAAFGPKLAKSLCVFPV 111 (414)
Q Consensus 85 ~~~~sy~~l~~~~~G~~~~~~~~~~~~ 111 (414)
.-.+-+.+++.+|+.++....+...
T Consensus 84 --~Gg~~~y~~~~~g~~~gf~~gw~~~ 108 (458)
T PRK10249 84 --SGSFAHFAYKYWGPFAGFLSGWNYW 108 (458)
T ss_pred --CCCHHHHHHHHhChHHHHHHHHHHH
Confidence 2356667889999987777776543
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.66 E-value=4.6e-06 Score=85.70 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=59.8
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGF-ATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
-+|+-+.++.+.-.+++++|+|++..|... +.+|-...++..++.+++......-+.|.....|. +-.+-.-+++.+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~--aGG~y~y~~~~~ 89 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE--TGAFHVYAARYL 89 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHhc
Confidence 345578899999999999999999877764 66674333445555566666666666666543332 223456777889
Q ss_pred CCccchhhhhHhH
Q 046376 99 GPKLAKSLCVFPV 111 (414)
Q Consensus 99 G~~~~~~~~~~~~ 111 (414)
|+..+....+...
T Consensus 90 g~~~gf~~gw~~~ 102 (471)
T PRK11387 90 GPATGYTVAWLYW 102 (471)
T ss_pred ChHHHHHHHHHHH
Confidence 9977766655543
No 28
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.62 E-value=1.5e-05 Score=87.95 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=79.6
Q ss_pred cCCceehhhHHH-Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC-CCCccccCHHHHHHHhc
Q 046376 22 RNGNTFSTVFHI-VSSGIGIQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP-VPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 22 ~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~-~~~~~~~sy~~l~~~~~ 98 (414)
++-+++++++.- +.+++|+|+.- +++...++|...++++.++.++++..+..-+.+.... .+.. --.|. ..++++
T Consensus 76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~a-GG~Y~-yisral 153 (953)
T TIGR00930 76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKG-GGAYY-LISRSL 153 (953)
T ss_pred cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cHHHH-HHHHHh
Confidence 345678888766 88999999987 7788889998778888888888888888877776542 2111 11333 446779
Q ss_pred CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHH
Q 046376 99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYK 135 (414)
Q Consensus 99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 135 (414)
|+.+|..+.+...+.. ..++..|.+..++.+..+++
T Consensus 154 Gp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf~ 189 (953)
T TIGR00930 154 GPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLLR 189 (953)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 9988777777666554 45566688888888777654
No 29
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.61 E-value=4.3e-06 Score=87.52 Aligned_cols=106 Identities=14% Similarity=0.031 Sum_probs=63.9
Q ss_pred hhhccCCCCCCCCCccccccCCceehhhHHHHhhhhhhhhchhHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHhccC
Q 046376 3 EVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGF--ATLGWTWGIICLLTAFAWQIYTIWLLVHLAE 80 (414)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~ 80 (414)
++-+++|-++|+..+..-+|+-+.++.+..-+.+++|+|+..+|... ...|-. ..+..++.++.+........|...
T Consensus 9 ~~~r~k~~~~~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas 87 (557)
T TIGR00906 9 CLIRRKIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGA 87 (557)
T ss_pred HHhccCCcccccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433233333456778999999999999999999999754 346753 344455555555555555666543
Q ss_pred CCCCc-cccCHHHHHHHhcCCccchhhhhHhHH
Q 046376 81 PVPGT-RYSRYMQVAKAAFGPKLAKSLCVFPVW 112 (414)
Q Consensus 81 ~~~~~-~~~sy~~l~~~~~G~~~~~~~~~~~~~ 112 (414)
+.|.. ....|. ++.+|+..+.+..+...+
T Consensus 88 ~~P~sGg~Y~y~---~~~~G~~~gfi~GW~~~l 117 (557)
T TIGR00906 88 RVPKAGSAYLYS---YVTVGELWAFITGWNLIL 117 (557)
T ss_pred hCCCCCcceeeH---HHHhCcHHHHHHHHHHHH
Confidence 33321 234444 355888777666665544
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.55 E-value=1.3e-05 Score=82.09 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=68.6
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFA-TLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
.+|+-+.++..+--+++++|+|++-.|.... ++|- ..++..++.++..+..+.-+.|...+.|. .-++-+-+++.+
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~--aGg~y~~~~~~~ 86 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV--AGSFSHFAYKYW 86 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHc
Confidence 4566788899999999999999988887655 4553 34455555666666666666676543332 234555677889
Q ss_pred CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376 99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLE 131 (414)
Q Consensus 99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 131 (414)
||..+..+.+...+.. ...+.+.....++.++
T Consensus 87 g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~ 118 (456)
T PRK10238 87 GSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQ 118 (456)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9977777766654433 3333444444454443
No 31
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.54 E-value=5.5e-06 Score=83.14 Aligned_cols=328 Identities=16% Similarity=0.154 Sum_probs=168.8
Q ss_pred CccccccCCceehhhHHHHhhhhhhhhchhHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccccCHH
Q 046376 16 LPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLG--WTWGIICLLTAFAWQIYTIWLLVHLAEP--VPGTRYSRYM 91 (414)
Q Consensus 16 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~g~ill~~~~~~~~~t~~ll~~~~~~--~~~~~~~sy~ 91 (414)
....++|+-+.+++++.++..++|+|+...|....+-+ ...++++-+++++++......-.|.-.. ++|. +|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~a 82 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYA 82 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chh
Confidence 34456677889999999999999999999999866554 2234666677788888877776666432 2332 344
Q ss_pred HHHHHhcCCccchhhhhHhHHHhhhhhh-HHHHHHHHhh-HHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhc
Q 046376 92 QVAKAAFGPKLAKSLCVFPVWYLSGGTC-IMLIITAGAD-LETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLL 169 (414)
Q Consensus 92 ~l~~~~~G~~~~~~~~~~~~~~~~~g~~-i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~ 169 (414)
=+. ++||+.++-...+...+.. ..+. ..+-+..++. ++..++ .|... +..--.+..+....+.+
T Consensus 83 yi~-~afg~~~aF~~~wvs~l~~-~p~~~Ai~altF~~Y~l~p~fp-------~c~~p---~~~~~lla~~~l~~lt~-- 148 (479)
T KOG1287|consen 83 YIS-EAFGPFPAFLFLWVSLLII-VPTSAAIIALTFATYLLKPFFP-------LCDVP---RVASKLLAAALLVLLTL-- 148 (479)
T ss_pred hHH-HHhccchhHHHHHHHHHHH-hhhHHHHHHHHHHHHhhcccCC-------CCCCc---hHHHHHHHHHHHHHHHH--
Confidence 444 5588866665555554433 3333 4455555555 444332 13211 11122223333334444
Q ss_pred cCccchhhHHHHHHHHHH---HHHHHHhhhhhcc------------------------------------cceeehhhhh
Q 046376 170 PNLNSVLKFSKTGTVTAV---VYVTLLWALTIRK------------------------------------GHNLVLEIQG 210 (414)
Q Consensus 170 ~~l~~l~~~s~~~~~~~~---~~~~i~~~~~~~~------------------------------------g~~~~~~i~~ 210 (414)
.|..+.+|.+.+=.+.+. +.+.++.+.+... |=+.+-.+.+
T Consensus 149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vte 228 (479)
T KOG1287|consen 149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTE 228 (479)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchH
Confidence 477777766655433322 2222222222211 1111112233
Q ss_pred hCCCCCCCCCcccchhHHHHHHHHHHHHHhhhhhhhcc--ccCcccCCccccccc-cccccCCCCcchHHHHHHHHHHHH
Q 046376 211 TLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYW--AYGNKVTAKEGLLSV-FSQVHGHDTSRGAMGSIYLLQIIN 287 (414)
Q Consensus 211 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~--~fG~~~~~~~~il~~-~~~~~g~~~~~~~~~i~~~~~~i~ 287 (414)
|+ |||+| +++|++..++.+++++|.++=+..+. ...|-.++ +.... +.+ +..+.|. -+.-.+..++
T Consensus 229 Ei----knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S--~aVav~Fa~---~~~G~~~-~~ip~~ValS 297 (479)
T KOG1287|consen 229 EI----KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSS--DAVAVTFAD---RILGVFA-WAIPFSVALS 297 (479)
T ss_pred hh----cCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhccc--chHHHHHHH---HhccchH-HHHHHHHHHH
Confidence 44 78875 89999999999999999986655443 33332222 22211 110 0111121 1222233333
Q ss_pred HhhhhcccccchHHHHHHH---------hhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchh
Q 046376 288 CLCQFQIYAMPAFDSLEFR---------YIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKF 357 (414)
Q Consensus 288 ~~~sypl~~~p~~~~le~~---------~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~f 357 (414)
.+.+.--.++.....+... +..+.+++.+ .+. ...+-....++..++.++..+.+.++=... ...+
T Consensus 298 ~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~T--P~~--allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l 373 (479)
T KOG1287|consen 298 LIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFT--PRP--ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGL 373 (479)
T ss_pred hhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCC--ChH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333322222221111111 1111111111 111 112223344444556678888888876666 7777
Q ss_pred hhhhhhhhhhcCCCCCcc
Q 046376 358 SYPCLMYNLIKKPDQSGT 375 (414)
Q Consensus 358 ilP~l~~l~~~k~~~~~~ 375 (414)
.+=+++++|.++++..++
T Consensus 374 ~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 374 SMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHHHhhCCCCCCC
Confidence 777899998877664443
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.51 E-value=5.6e-06 Score=81.93 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=61.0
Q ss_pred CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376 24 GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA 103 (414)
Q Consensus 24 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (414)
-|.+|.++.++.+++|+|++.+|...++.+---+-+..++.+...........+..++.|+ .+.-|..++.+||..|
T Consensus 3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~---~~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE---KNFSEILSKYLGKILG 79 (359)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhhHHHH
Confidence 3567889999999999999999998765322223345555666666667777777655443 3688999999999877
Q ss_pred hhhhhHhH
Q 046376 104 KSLCVFPV 111 (414)
Q Consensus 104 ~~~~~~~~ 111 (414)
+.+.....
T Consensus 80 ~~~~~~~~ 87 (359)
T TIGR00912 80 RLLSILFI 87 (359)
T ss_pred HHHHHHHH
Confidence 77665433
No 33
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.48 E-value=1.6e-05 Score=80.93 Aligned_cols=110 Identities=18% Similarity=0.056 Sum_probs=64.9
Q ss_pred ccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
+|+-+.++...--+..++|....+.+.+++..|+..-++..++.++.....+....|...+.|.. -..-.-+++.+|+
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~--Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA--GGGYGFARRAFGP 83 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHhCc
Confidence 45567777777777778885555678889999986433444444444444444556654333321 2334466788999
Q ss_pred ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHH
Q 046376 101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETL 133 (414)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~ 133 (414)
..+....+...+.. .....++....++.++.+
T Consensus 84 ~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~~ 115 (442)
T TIGR00908 84 WGGFLAGTAILIEF-AFAPPAIACFIGAYCESL 115 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 77776666544332 333444555566665544
No 34
>PRK10836 lysine transporter; Provisional
Probab=98.44 E-value=7e-05 Score=77.37 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=64.7
Q ss_pred cccccCCceehhhHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHH
Q 046376 18 LTASRNGNTFSTVFHIVSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKA 96 (414)
Q Consensus 18 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~ 96 (414)
++-+|+-+.++.+...+.+++|+|++.+|. +.+++|-...++..++.+++....+.-..|...+.|. .-..-.-+++
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~--sGg~y~y~~~ 88 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV--SGSFATYGQN 88 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHH
Confidence 345566788999999999999999999996 6667786445667777777777777777777644432 2344555667
Q ss_pred hcCCccchhhhhHh
Q 046376 97 AFGPKLAKSLCVFP 110 (414)
Q Consensus 97 ~~G~~~~~~~~~~~ 110 (414)
.+|+.++....+..
T Consensus 89 ~~g~~~gf~~Gw~~ 102 (489)
T PRK10836 89 YVEEGFGFALGWNY 102 (489)
T ss_pred HcChHHHHHHHHHH
Confidence 78887776665543
No 35
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.42 E-value=6.5e-05 Score=76.62 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=54.3
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHhccCCC--CCccccCHHHHHH
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGF-ATLGWT-WGIICLLTAFAWQIYTIWLLVHLAEPV--PGTRYSRYMQVAK 95 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~-~g~ill~~~~~~~~~t~~ll~~~~~~~--~~~~~~sy~~l~~ 95 (414)
-+|+-+.+++..-.+..++|+|++..|... ...|-. ..++..++.+++.........|..... .| ....| .+
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G-G~y~y---~~ 81 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG-ADYVY---LK 81 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cceee---HH
Confidence 456678888998888899999999999874 445532 233334444455555555555554322 23 23445 44
Q ss_pred HhcCCccchhhhhHhH
Q 046376 96 AAFGPKLAKSLCVFPV 111 (414)
Q Consensus 96 ~~~G~~~~~~~~~~~~ 111 (414)
+.+||..+....+...
T Consensus 82 ~~~g~~~gf~~gw~~~ 97 (445)
T PRK11357 82 NAGSRPLAFLSGWASF 97 (445)
T ss_pred HhcCChhHHHHHHHHH
Confidence 7799877766665533
No 36
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.41 E-value=0.00011 Score=75.57 Aligned_cols=90 Identities=13% Similarity=-0.033 Sum_probs=61.6
Q ss_pred cCCceehhhHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIGIQALFLP-VGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|+-+.++...-.+.+++|+|++..| .+.+.+|-...++..++.+++......-+.|.....|. ..-.|.+-+++.+|+
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~-~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV-VSGSFATYASRFVDP 80 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcCc
Confidence 4567788888899999999999855 55667774433445555666666666666776544432 123677888999999
Q ss_pred ccchhhhhHhHH
Q 046376 101 KLAKSLCVFPVW 112 (414)
Q Consensus 101 ~~~~~~~~~~~~ 112 (414)
.++....+...+
T Consensus 81 ~~gf~~gw~~~~ 92 (478)
T TIGR00913 81 AFGFAVGWNYWL 92 (478)
T ss_pred HHHHHHHHHHHH
Confidence 878776665443
No 37
>PRK10746 putative transport protein YifK; Provisional
Probab=98.35 E-value=0.00018 Score=73.79 Aligned_cols=89 Identities=9% Similarity=0.005 Sum_probs=62.4
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
.+|+-+.++..+--+.+++|+|++-.|.. .+.+|- ..++..++.+++.+..+.-+.|.....|. .-++.+-+++.+
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~~~~ 84 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAHRYM 84 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHh
Confidence 34556788888999999999999996655 556675 34455555666666666667777544432 346777899999
Q ss_pred CCccchhhhhHhH
Q 046376 99 GPKLAKSLCVFPV 111 (414)
Q Consensus 99 G~~~~~~~~~~~~ 111 (414)
|+.+|..+.+...
T Consensus 85 g~~~Gf~~gw~~~ 97 (461)
T PRK10746 85 SPFFGYLTAWSYW 97 (461)
T ss_pred CcHHHHHHHHHHH
Confidence 9988876666443
No 38
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.33 E-value=0.00021 Score=73.17 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=62.6
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
.+|+-+.++..+..+.+++|+|++.+|.. .+.+|- ...+..++.++.......-+.|...+.|. .-..-+-+++.+
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~--~Gg~y~y~~~~~ 83 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA--ASSFSRYAQENL 83 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHc
Confidence 34556788899999999999999998876 556675 35666666666767777777777644432 123444678889
Q ss_pred CCccchhhhhHhHH
Q 046376 99 GPKLAKSLCVFPVW 112 (414)
Q Consensus 99 G~~~~~~~~~~~~~ 112 (414)
||..+..+.+...+
T Consensus 84 G~~~gf~~gw~~~~ 97 (457)
T PRK10580 84 GPLAGYITGWTYCF 97 (457)
T ss_pred CcHHHHHHHHHHHH
Confidence 99777777665443
No 39
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.32 E-value=5.1e-05 Score=76.72 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=60.4
Q ss_pred ceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376 25 NTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ-IYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA 103 (414)
Q Consensus 25 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~-~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (414)
+++++....++.++|+|+...| .....|.. ..+..++.+.+. ........|...+.| ++-..-+-+++.+||+++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p--~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYP--SAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTT--SSTTHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCC--CcCeeeehhhhcccccch
Confidence 4577888889999999999999 77777765 444444333333 344445555544322 223445677888999877
Q ss_pred hhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376 104 KSLCVFPVWYLSGGTCIMLIITAGADLE 131 (414)
Q Consensus 104 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 131 (414)
....+...+.. ...+.++.....+.+.
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 104 (426)
T PF13520_consen 78 FIVGWLYWVAY-ILSLASVASSFASYLL 104 (426)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred hcccceeEEEe-eccccccccchhhhhh
Confidence 76666554432 3333344444454443
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.22 E-value=0.00013 Score=75.69 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=53.9
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHH--HHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHH
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGI--ICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKA 96 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~--ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~ 96 (414)
.+|+-+.++.+.-.+++++|+|++..|.. .+++|-. |. +..++.+++.........|.....|.. -..-.-.++
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aELas~~P~s--GG~y~~~~~ 116 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAELGTTIPKS--GGEYNYILE 116 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CchhhhHHh
Confidence 34556788888888889999999998876 4556643 32 333445555555556666665433321 122233456
Q ss_pred hcCCccchhhhhHh
Q 046376 97 AFGPKLAKSLCVFP 110 (414)
Q Consensus 97 ~~G~~~~~~~~~~~ 110 (414)
.+||..+....+..
T Consensus 117 ~~g~~~gf~~gw~~ 130 (501)
T TIGR00911 117 VFGPLLAFLRLWIE 130 (501)
T ss_pred HhCCHHHHHHHHHH
Confidence 79987676555543
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.16 E-value=0.0004 Score=70.90 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=54.2
Q ss_pred HhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhHhH
Q 046376 34 VSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPV 111 (414)
Q Consensus 34 ~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~ 111 (414)
+.+++|+|++-.|. +.++.|. ..++..++.+++....+....|.....|. .-..-+-+++.+||.++....+...
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~--~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD--TGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHcChHHHHHHHHHHH
Confidence 46799999999888 7888896 36777777777777777777777644332 2355667779999977776665544
No 42
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.13 E-value=1.4e-05 Score=70.56 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=93.6
Q ss_pred hHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcc----------------CCC-----------
Q 046376 30 VFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLA----------------EPV----------- 82 (414)
Q Consensus 30 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~----------------~~~----------- 82 (414)
..-+.|-++|+|.|+||.+|+.+||++++.++.+.+++++.+....++.. +.+
T Consensus 18 llymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~d 97 (319)
T KOG3832|consen 18 LLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDD 97 (319)
T ss_pred HhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCc
Confidence 34566779999999999999999999999999999999998877766531 000
Q ss_pred -------------C-------C-------ccccCHHHHHHHhcCCccchhh-hhHhHHHhhhhhhHHHHHHHHhhHHHHH
Q 046376 83 -------------P-------G-------TRYSRYMQVAKAAFGPKLAKSL-CVFPVWYLSGGTCIMLIITAGADLETLY 134 (414)
Q Consensus 83 -------------~-------~-------~~~~sy~~l~~~~~G~~~~~~~-~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 134 (414)
| | .+....++++...|.| .+.-. -..+++++ ||....|--...-+..++.
T Consensus 98 vli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiyl-fgdlaiyaaavpfs~m~it 175 (319)
T KOG3832|consen 98 VLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYL-FGDLAIYAAAVPFSAMNIT 175 (319)
T ss_pred EEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHH-hhhhhhhhhcCchHhhhhh
Confidence 0 0 0112356777777776 44433 33334444 8888888665555544443
Q ss_pred HHH-----hC-CC-------cccccCCCC----cchhhHhHHHH-HHHHhhhccCccchhhHHHHHHHH
Q 046376 135 KIM-----CG-GI-------ATCEAKSLP----GVVWCLLFICI-AIVVSQLLPNLNSVLKFSKTGTVT 185 (414)
Q Consensus 135 ~~~-----~~-~~-------~~~~~~~~~----~~~~~~i~~~~-~lpLs~l~~~l~~l~~~s~~~~~~ 185 (414)
-.. |+ .. +.|+++.++ .+.|++++.++ ++|+.+. ++.+-+++..+...+
T Consensus 176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~--diqktk~iqiltslm 242 (319)
T KOG3832|consen 176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA--DIQKTKHIQILTSLM 242 (319)
T ss_pred hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe--ccccchhHHHHHHHH
Confidence 221 11 11 234332222 24566666544 3466555 777777777665543
No 43
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.92 E-value=0.0007 Score=67.37 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=88.2
Q ss_pred cCCceehhhHHHHhhhhhhhhc-hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIGIQAL-FLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|.-+.++--+.=+.+.||+|.. +--.+.+.+|-- -++.-.+.+++.+.=++.|.|...++| ...|+.+.+++.+|+
T Consensus 13 rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p--~~gSF~~~a~~~lG~ 89 (462)
T COG1113 13 RGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANP--VSGSFSDYARKYLGP 89 (462)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcHHHHHHHHhcc
Confidence 3345666667778889999974 477788888832 244455666777777888888765433 346999999999999
Q ss_pred ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHH--HHhhhccCccchhh
Q 046376 101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAI--VVSQLLPNLNSVLK 177 (414)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l--pLs~l~~~l~~l~~ 177 (414)
+.|...++.-...- .-++++-+...+..++.+++. .+.|.+.++..++.. -|.-. |.+.++.+
T Consensus 90 ~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~WfP~------------vP~Wv~al~~~~l~~~~NL~sV-k~FGE~Ef 154 (462)
T COG1113 90 WAGFLTGWTYWFFW-VLVGIAELTAIGIYLQFWFPD------------VPQWVFALAAVVLLLAVNLISV-KVFGELEF 154 (462)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 87776666544332 455667777777777665431 134455444333322 23445 66666654
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.91 E-value=0.0036 Score=63.85 Aligned_cols=110 Identities=21% Similarity=0.138 Sum_probs=59.2
Q ss_pred ccccCCceeh-hhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHh
Q 046376 19 TASRNGNTFS-TVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAA 97 (414)
Q Consensus 19 ~~~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~ 97 (414)
.++|+-+.++ ...-....++|.|++.+|......+ ....+..++.+++.........|.....|. .-.+-+-+++.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~--~GG~y~~~~~~ 85 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS--AGGAYAYAKRA 85 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeeehhhh
Confidence 3444455566 6777788899999999999988775 111221233333333333444444332221 22345567788
Q ss_pred cCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHH
Q 046376 98 FGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLET 132 (414)
Q Consensus 98 ~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 132 (414)
+|++.+....+...+.. .....+..+..++.+..
T Consensus 86 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 119 (466)
T COG0531 86 LGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSY 119 (466)
T ss_pred cCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99877755555444332 33334444444444433
No 45
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.89 E-value=0.0054 Score=62.46 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=95.3
Q ss_pred cCCceehhhHHHHhhhhhhhhc-hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIGIQAL-FLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|+-..++-.+.=+.+.+|+|.+ +.-.+.+++|-...++-..+.+.+.+..+.-|.|.+...| ..-+|.+-+.+.-++
T Consensus 44 R~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P--~sGsF~~ya~rfvdp 121 (541)
T COG0833 44 RSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP--VSGSFSTYATRFVDP 121 (541)
T ss_pred hhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCchhhhhhhhcCc
Confidence 4445566677778899999986 5899999999887788888888888888888999875544 234688888888888
Q ss_pred ccchhhhhHhHHHhhhhhhHHH-HHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhh-ccCccchh-h
Q 046376 101 KLAKSLCVFPVWYLSGGTCIML-IITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQL-LPNLNSVL-K 177 (414)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~i~y-~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l-~~~l~~l~-~ 177 (414)
.+|..+.+. +... +...++- +..++..++.+. ++ ..+.+.|++++.++++.+..+ +|.+.+.. |
T Consensus 122 a~GFa~gWn-Yw~~-w~v~~~~El~aa~~vi~yW~----p~-------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw 188 (541)
T COG0833 122 AFGFALGWN-YWLN-WAVTLPLELTAASLVIQYWF----PD-------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFW 188 (541)
T ss_pred hHHHHHHHH-HHHH-HHHHhhHHHHHHHHhhhhhc----CC-------CCChHHHHHHHHHHHHHHHHhcccccceehHH
Confidence 666555443 2222 4444443 333333333221 11 124568888877776665443 15565554 3
Q ss_pred HHHHHHHHH
Q 046376 178 FSKTGTVTA 186 (414)
Q Consensus 178 ~s~~~~~~~ 186 (414)
+|.+=+++.
T Consensus 189 ~s~iKV~~i 197 (541)
T COG0833 189 FSSIKVLTI 197 (541)
T ss_pred HHHHHHHHH
Confidence 444444333
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.75 E-value=0.023 Score=58.61 Aligned_cols=83 Identities=14% Similarity=-0.046 Sum_probs=45.3
Q ss_pred ccCCceehhhHHHHhhhhh--hhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHh
Q 046376 21 SRNGNTFSTVFHIVSSGIG--IQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAA 97 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG--~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~ 97 (414)
+|+-+.++.+. +.-+++| +|+.. .+.+..+.|-..-+...++.+++....+.-+.|...+.|. .-..-.-++++
T Consensus 11 ~r~l~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~--~Gg~y~~~~~~ 87 (482)
T TIGR00907 11 KREFSLWSIFG-FAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT--SGGQYFWSAKL 87 (482)
T ss_pred ecccchhHHHH-HHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHh
Confidence 34456565543 3333454 55543 5556777776544555666666666666667777544332 12334445666
Q ss_pred cCCccchhh
Q 046376 98 FGPKLAKSL 106 (414)
Q Consensus 98 ~G~~~~~~~ 106 (414)
+|++.++..
T Consensus 88 ~g~~~g~~~ 96 (482)
T TIGR00907 88 APPRQMPFA 96 (482)
T ss_pred cccccccce
Confidence 776554443
No 47
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.74 E-value=0.0011 Score=64.60 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=54.9
Q ss_pred ceehhhHHHHhhhhhhhhchhHHHHHhh---ChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376 25 NTFSTVFHIVSSGIGIQALFLPVGFATL---GWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 25 s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (414)
|..|...-+..+++|+|++.+|....+. ||+. .++-.+.+... ..+..+..++.|+ .+..|..++.+||.
T Consensus 3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~-~ll~~~~~l~~---~~l~~~l~~~~p~---~~l~~~~~~~~Gk~ 75 (320)
T PF03845_consen 3 SPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS-VLLGGLIGLLL---ALLIYYLLKRFPG---KTLVEISEKLFGKW 75 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHH---HHHHHHHHHHCCC---CCHHHHHHHHhCcH
Confidence 4567888999999999999999997666 5763 33333333333 3334444433223 48899999999998
Q ss_pred cchhhhhHhHH
Q 046376 102 LAKSLCVFPVW 112 (414)
Q Consensus 102 ~~~~~~~~~~~ 112 (414)
.|+.+.....+
T Consensus 76 lg~ii~~~~~l 86 (320)
T PF03845_consen 76 LGKIINLLYIL 86 (320)
T ss_pred HHHHHHHHHHH
Confidence 88877654433
No 48
>PRK11375 allantoin permease; Provisional
Probab=97.35 E-value=0.026 Score=58.16 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=48.8
Q ss_pred ccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccc----cCCCCc--chhhHhHHH
Q 046376 87 YSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCE----AKSLPG--VVWCLLFIC 160 (414)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~----~~~~~~--~~~~~i~~~ 160 (414)
..++.-++|..||.+..++...+......+|=--.-..+.++.++.+.+...+.-..-. ....+. ....+++.+
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 46899999999999765655544322122333333455677777776655432100000 001111 122234455
Q ss_pred HHHHHhhhccCccchhhHHHHHH
Q 046376 161 IAIVVSQLLPNLNSVLKFSKTGT 183 (414)
Q Consensus 161 ~~lpLs~l~~~l~~l~~~s~~~~ 183 (414)
+..++.+. ..|.+++++..+.
T Consensus 168 l~~~~~~~--g~~~i~~l~~i~~ 188 (484)
T PRK11375 168 VNVGIGFG--GGKVLNKFTAILN 188 (484)
T ss_pred HHHHHHHc--CHHHHHHHHHHHH
Confidence 55666543 6666666655554
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.24 E-value=0.15 Score=52.40 Aligned_cols=31 Identities=16% Similarity=-0.034 Sum_probs=24.6
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHhhhhhhh
Q 046376 215 SKFNPSSQKMWRAVKISYMTIGMCSFPLALTG 246 (414)
Q Consensus 215 ~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~g 246 (414)
|.|||+| +++|++..+..++.++|....+.-
T Consensus 219 E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~ 249 (474)
T TIGR03813 219 DVDNPDK-NYPIAILIAALGTVLIFVLGTLAI 249 (474)
T ss_pred hccCccc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 3478875 789999999999999998755443
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.18 E-value=0.22 Score=51.50 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=49.2
Q ss_pred ccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIY-TIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~-t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
+|+-++++.+...+++++|.+ .+|.++++.|.. +++...+.+++... ......|.....|+. .-.--.=.++++|
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~-aGG~Y~w~~~~~G 81 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDE-KGGIYSWMNKSVG 81 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHcC
Confidence 455677888877888899875 579889998864 44444444433322 333455554333210 0122234567799
Q ss_pred Cccchhhhh
Q 046376 100 PKLAKSLCV 108 (414)
Q Consensus 100 ~~~~~~~~~ 108 (414)
++++....+
T Consensus 82 ~~~gf~~~w 90 (496)
T PRK15238 82 PKFAFIGTF 90 (496)
T ss_pred chHHHHHHH
Confidence 988875443
No 51
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.05 E-value=0.22 Score=49.90 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=51.6
Q ss_pred ccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHh
Q 046376 87 YSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVS 166 (414)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs 166 (414)
..++.-++|..||++..++...... ..+.|=-..-....++.++.+.+...+. .+...+.++++++..+.+
T Consensus 57 Gl~~~v~sR~~FG~~Gs~~~~~l~~-i~~igW~~v~~~~gg~~l~~~~~~~~~~--------~~~~~~~~i~~~l~~~~~ 127 (386)
T TIGR02358 57 GLSAMGSLKLSLGSKGSVLPSLLNL-LQLVGWTAVMIIVGAKAASLLGGRLFGE--------ESPMLWILIVGILVTLWL 127 (386)
T ss_pred CcCHHHHHHHHHccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHH
Confidence 4678999999999976555544433 2334444455667788888877543221 112344555566556655
Q ss_pred hhccCccchhhHHHHHHH
Q 046376 167 QLLPNLNSVLKFSKTGTV 184 (414)
Q Consensus 167 ~l~~~l~~l~~~s~~~~~ 184 (414)
.. ..|.++++..++..
T Consensus 128 ~~--G~~~i~~~~~~~~~ 143 (386)
T TIGR02358 128 LS--GPLAFVWLNNWSVW 143 (386)
T ss_pred HH--HHHHHHHHHHHHHH
Confidence 54 55666666655543
No 52
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.05 E-value=0.08 Score=53.99 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=36.3
Q ss_pred ccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhC
Q 046376 87 YSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCG 139 (414)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~ 139 (414)
..++.-+.|..||.+..++...+.. ..+.|=...-....++.++.+.+...+
T Consensus 75 Gl~~~v~sR~~FG~~Gs~~~~~~~~-i~~igW~av~~~~~g~al~~~l~~i~~ 126 (442)
T TIGR00800 75 GLPFPVLSRASFGIYGSLLPSLLRI-VMAIGWYGVQAWVGGLCVALMLDSIFP 126 (442)
T ss_pred CCCcchhhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 3578899999999976665554443 344666666778888888887766543
No 53
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.01 E-value=0.39 Score=49.57 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=70.0
Q ss_pred ccCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHH--HHHHHHHH-HHHHHHHhccCCCCCccccCHHHHHHH
Q 046376 21 SRNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICL--LTAFAWQI-YTIWLLVHLAEPVPGTRYSRYMQVAKA 96 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill--~~~~~~~~-~t~~ll~~~~~~~~~~~~~sy~~l~~~ 96 (414)
.|+-+++-..+.+..+.+| ...++.|....+-|+....... .....+.. +-+..+.+..++ .+..|..|.-++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YNAVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHH
Confidence 3445566667777666655 4667788777777764211111 11111111 122222222222 235799999999
Q ss_pred hcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchh
Q 046376 97 AFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVL 176 (414)
Q Consensus 97 ~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~ 176 (414)
-||++..+....+..+...++...+-+...+..++.+.. .+.+.-+++.+++++..+.+ ..++...
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------------i~~~~~iii~~~iv~iYt~~-GGl~av~ 182 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------------ISYETGLLIFGITVALYTAF-GGFRAVV 182 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------CCHHHHHHHHHHHHHHHHHh-ccHHHHH
Confidence 999765555543333322233333334444555544321 11122333444444555556 6666666
Q ss_pred hHHHH
Q 046376 177 KFSKT 181 (414)
Q Consensus 177 ~~s~~ 181 (414)
|+..+
T Consensus 183 ~TD~i 187 (483)
T PRK09442 183 LTDAL 187 (483)
T ss_pred HHHHH
Confidence 65543
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.97 E-value=0.066 Score=51.33 Aligned_cols=128 Identities=18% Similarity=0.331 Sum_probs=84.5
Q ss_pred hHHHHhhhhhhhhch---hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhh
Q 046376 30 VFHIVSSGIGIQALF---LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSL 106 (414)
Q Consensus 30 ~~~l~~~~iG~GiL~---LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~ 106 (414)
.|-.+.+++|+|-=+ +=-=|..-||- |..-.++++.+-..++.++.+...+ -+..+|+|.-++.+||+++|+.
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~---f~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKK---FNATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH---hcccchHHHHHHHhhHHHHHHH
Confidence 455666888988655 22224445654 5556666667777777777776543 2356899999999999999999
Q ss_pred hhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchh
Q 046376 107 CVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVL 176 (414)
Q Consensus 107 ~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~ 176 (414)
+....+.+ ++.++.-+-.+|+.+++.+. .+.|.-.++..+....+-++ ++.+.+-
T Consensus 85 d~~iif~l-f~~~vVM~AGags~~~e~~~-------------lP~wiGali~i~~v~i~lfl-~~vegi~ 139 (349)
T COG3949 85 DIIIIFFL-FSTAVVMLAGAGSLLEEMFG-------------LPYWIGALIIILLVLILLFL-GRVEGII 139 (349)
T ss_pred HHHHHHHH-HHHHHHHhccchhHHHHHhC-------------ccHHHHHHHHHHHHHHHHHH-hccccee
Confidence 98888776 88888888777776666432 22233224444444555566 7676654
No 55
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.95 E-value=0.29 Score=50.29 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=74.0
Q ss_pred cccCCceehhhHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHHHhccCCCCCccccCHHHHHH
Q 046376 20 ASRNGNTFSTVFHIVSSGIGI-QALFLPVGFATLGWTWGIICLL--TAFAWQI-YTIWLLVHLAEPVPGTRYSRYMQVAK 95 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~ill~--~~~~~~~-~t~~ll~~~~~~~~~~~~~sy~~l~~ 95 (414)
..|+-+++...+.+..+.+|+ ..++.|-...+.|+.+...... ..+.+.. .-.....+..++ .+..|.+|.-+
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~ 114 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK---YNAITINDVLK 114 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHH
Confidence 345566777778888888874 4567888888888642111111 0111110 111112222221 23579999999
Q ss_pred HhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccch
Q 046376 96 AAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSV 175 (414)
Q Consensus 96 ~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l 175 (414)
+-||++..++...+.....+++...+-+...+..++.+.. .+.+.-+++.+++++..+.. .-++..
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------------i~~~~~iii~~~iv~iYt~~-GG~~av 180 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------------LSYLTALFIFSSSVLIYTTF-GGFRAV 180 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHh-hhHHHH
Confidence 9999766555543333323344444444445554444431 11222333444444445555 566666
Q ss_pred hhHHHHH
Q 046376 176 LKFSKTG 182 (414)
Q Consensus 176 ~~~s~~~ 182 (414)
.|+..+=
T Consensus 181 ~~td~iQ 187 (471)
T TIGR02119 181 ALTDAIQ 187 (471)
T ss_pred HHHHHHH
Confidence 6655443
No 56
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.90 E-value=0.65 Score=47.77 Aligned_cols=90 Identities=14% Similarity=-0.037 Sum_probs=51.4
Q ss_pred ccCCceehhhHHHHhh-hhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 21 SRNGNTFSTVFHIVSS-GIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~-~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
+|+-+.++.+.--++. .+|+|+.++|.. ...+|- ..+...++.++.......-+.|...+.|.. -..-.-+++.+
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a--GG~Y~~~~~~~ 88 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS--GAIYQWSRRMG 88 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCHHHHHHHHc
Confidence 3446667665444443 378888886544 556665 334445555555555555666665443321 12233456778
Q ss_pred CCccchhhhhHhHHH
Q 046376 99 GPKLAKSLCVFPVWY 113 (414)
Q Consensus 99 G~~~~~~~~~~~~~~ 113 (414)
||..+....+...+.
T Consensus 89 g~~~gf~~gW~~~~~ 103 (475)
T TIGR03428 89 GEVIGWFAGWFMIIA 103 (475)
T ss_pred CccccHHHHHHHHHH
Confidence 998887777665543
No 57
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.79 E-value=0.39 Score=49.94 Aligned_cols=28 Identities=11% Similarity=-0.135 Sum_probs=22.0
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHhhhh
Q 046376 215 SKFNPSSQKMWRAVKISYMTIGMCSFPLA 243 (414)
Q Consensus 215 ~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g 243 (414)
|.|||+| +++|++..+..++.++|....
T Consensus 219 E~knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 219 ELENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HccCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 4588875 789999999888888887533
No 58
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.73 E-value=0.045 Score=57.09 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=61.5
Q ss_pred hccCCCCCCCCCcc-ccccCCceehhhHHHHhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 046376 5 QKLQPNSLDDWLPL-TASRNGNTFSTVFHIVSSGIGIQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPV 82 (414)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~ 82 (414)
++++.+..|+..+. .-+|+.+.++-.+.=+.+.+|+|++= ...+.++.|=..-++-.++.+...+.++.-+.|...+.
T Consensus 12 ~~~~~~~~~~~~~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~ 91 (554)
T KOG1286|consen 12 TRREVDSFDSAEGETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRF 91 (554)
T ss_pred cccccccccccCccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 34444443433333 33466677877777788999999976 67778888866555556666666666777777765544
Q ss_pred CCccccCHHHHHHHhcCCccchhhhh
Q 046376 83 PGTRYSRYMQVAKAAFGPKLAKSLCV 108 (414)
Q Consensus 83 ~~~~~~sy~~l~~~~~G~~~~~~~~~ 108 (414)
|.. .-++-.-+++..|+.++-.+.+
T Consensus 92 P~~-aGs~~~ya~~~i~e~~aF~~gW 116 (554)
T KOG1286|consen 92 PVS-AGSFYTYAYRFVGESLAFAIGW 116 (554)
T ss_pred ccc-cccceeeeeeeeCcHHHHHHHH
Confidence 421 1233344455566654444443
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.94 Score=45.80 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhc-
Q 046376 91 MQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLL- 169 (414)
Q Consensus 91 ~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~- 169 (414)
..++|..||.+.+ ++..+.....+.|-.....+..++. ... . ...+.+.++++.++++...+.+.
T Consensus 84 mi~sR~~fG~~Gs-~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~-------~~~~~~~~ili~g~l~~l~~ifG~ 149 (442)
T COG1457 84 MILSRYPFGVKGS-ILPSLLNGITLIGWFGVNVILSGIA---IGS---G-------TGLPVWAGILIIGVLMTLVTIFGY 149 (442)
T ss_pred heeecccccchhH-HHHHHHHHHHHhhHHHHHHHHhccc---ccc---C-------CCCcHHHHHHHHHHHHHHHHHHhH
Confidence 4578899999645 4433333334466555556655554 110 0 11234566777777666655441
Q ss_pred cCccchhhHHHHHHHH
Q 046376 170 PNLNSVLKFSKTGTVT 185 (414)
Q Consensus 170 ~~l~~l~~~s~~~~~~ 185 (414)
|-++.+..++..-.+.
T Consensus 150 r~l~~l~~~a~~~~~~ 165 (442)
T COG1457 150 RALHKLERIAVPLLLL 165 (442)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456665555544433
No 60
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.15 E-value=0.045 Score=56.36 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=54.0
Q ss_pred Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhHh
Q 046376 34 VSSGIGIQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFP 110 (414)
Q Consensus 34 ~~~~iG~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~ 110 (414)
+.+++|+|++. .+.+..+.|.....+..++.+++...++.-+.+...+.+ +.-++-+.+++.+|++.|....+..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p--~~Gg~y~y~~~~lg~~~Gf~~gw~y 82 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP--SAGGFYAYASRGLGPALGFAAGWAY 82 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc--cccchhhhhhhccCCcCCceeeHHH
Confidence 45678888766 778899999866667777777777777777777765433 2345667778899998887776663
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=95.94 E-value=1.2 Score=44.91 Aligned_cols=143 Identities=18% Similarity=0.141 Sum_probs=76.1
Q ss_pred cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|+-+++...+.+..+.+| ...++.|....+.|+. +................+..+..++ .+..|..|.-++-||+
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NGAYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cCCCchhHHHHHHhCc
Confidence 445566666777666665 5667788888888864 2222222222222333444443332 2357999999999998
Q ss_pred ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHH
Q 046376 101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK 180 (414)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~ 180 (414)
+..+.+..+..+...+.....-+...+..++.+.. .+.+.-+++.+++++..+.. .-++...|+..
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------------i~~~~~~ii~~~i~~~Yt~~-GG~~av~~Td~ 144 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------------LDLYLSLLLLGAITILYTVF-GGLKAVVWTDT 144 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------chHHHHHHHHHHHHHHHHHH-cchHHHHHHHH
Confidence 65666543333323344444455555555554331 11122334444444455556 66666666654
Q ss_pred HH
Q 046376 181 TG 182 (414)
Q Consensus 181 ~~ 182 (414)
+=
T Consensus 145 iQ 146 (407)
T TIGR00813 145 IQ 146 (407)
T ss_pred HH
Confidence 44
No 62
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=95.42 E-value=2.5 Score=45.03 Aligned_cols=161 Identities=14% Similarity=0.170 Sum_probs=88.5
Q ss_pred CCceehhhHHHHhhhhhhhh-chhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccccCHHHHHHHhcC
Q 046376 23 NGNTFSTVFHIVSSGIGIQA-LFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP--VPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 23 ~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~--~~~~~~~sy~~l~~~~~G 99 (414)
-|+......-.+..+.|.=. +-|-|....+|...|.++.+.++..+..|+.-+...+.. +++ --+|--+.| .+|
T Consensus 114 mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa--GGsYfmISR-sLG 190 (1075)
T KOG2082|consen 114 MGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA--GGSYFMISR-SLG 190 (1075)
T ss_pred cceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCeeEEEec-ccC
Confidence 34555555555566666433 347888888899999999999988888888777666532 221 136766664 467
Q ss_pred CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHH-HHHHH--hC-CCccccc--CCCCcchhhHhHHHHHHH--HhhhccC
Q 046376 100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLET-LYKIM--CG-GIATCEA--KSLPGVVWCLLFICIAIV--VSQLLPN 171 (414)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~-~~~~~--~~-~~~~~~~--~~~~~~~~~~i~~~~~lp--Ls~l~~~ 171 (414)
|..|-.+..+.++.+. -+..-|++.+-+.+-. +++.. ++ +++..+. -..+.+.|--++.+++.. ..-. |-
T Consensus 191 PEFGgAVGlcFYLgtT-~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GV-K~ 268 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTT-VAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGV-KF 268 (1075)
T ss_pred ccccceeeehhhhhhH-HHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHH-HH
Confidence 7777777766665552 2333366655544322 33221 11 1111111 112345665443333332 2334 55
Q ss_pred ccchhhHHHHHHHHHHH
Q 046376 172 LNSVLKFSKTGTVTAVV 188 (414)
Q Consensus 172 l~~l~~~s~~~~~~~~~ 188 (414)
.++++..++..++.++.
T Consensus 269 Vnk~A~vfL~CVILSIl 285 (1075)
T KOG2082|consen 269 VNKFAPVFLACVILSIL 285 (1075)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 56666666666555443
No 63
>PRK00701 manganese transport protein MntH; Reviewed
Probab=95.35 E-value=3.8 Score=41.77 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=24.5
Q ss_pred cCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHH
Q 046376 88 SRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLET 132 (414)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 132 (414)
.+..|+.++-+|+++.+.......+. +.+..++-.+..+..++.
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~-~~~~~~~e~~G~a~al~l 137 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELA-IMATDLAEVIGAAIALKL 137 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46789999999985544443333222 244455555544444443
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=95.13 E-value=1.4 Score=44.30 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=67.7
Q ss_pred cCCceehhhHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIGI-QALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|+-+++...+.+..+.+|+ ..++.|....+.|+.. ....+............+.+-.++ .+..|..|.-++-||+
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR---SGAVTIPEYLEKRYGS 81 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH---TT--SHHHHHHHHT-H
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc---cchhhhhhhhhhhcCC
Confidence 4455666777777777764 6778898888888753 333333222222333333332221 2357899999999998
Q ss_pred cc-chhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHH
Q 046376 101 KL-AKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFS 179 (414)
Q Consensus 101 ~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s 179 (414)
+. .+.+.....+........+.+...+..++.+. + .+....+++.+++.+..+.. --++...++.
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~----g---------i~~~~~~~i~~~i~~iYt~~-GGl~av~~td 147 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF----G---------IPYNTAILIVGVIVIIYTFF-GGLRAVAWTD 147 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----T-----------HHHHHHHHHHHHHHTTCT-T------SHH
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhcc----c---------hhhhHHHHHHHHHHHHhhhh-hhHhhhhHHH
Confidence 65 34444332222223344444444454444432 1 11223334445555555666 6677777665
Q ss_pred HHH
Q 046376 180 KTG 182 (414)
Q Consensus 180 ~~~ 182 (414)
.+=
T Consensus 148 ~iQ 150 (406)
T PF00474_consen 148 FIQ 150 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 65
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=94.96 E-value=5.8 Score=41.72 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=43.8
Q ss_pred cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQI-YTIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~-~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
|+-+++...+.+..+.++ ...++.|....+.|+- +....+.. .+.+ .....+.+-.++ ....|.+|.-++=||
T Consensus 67 r~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g~-~~~~~i~~~~~a~~lrr---~g~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 67 GNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLGF-LVGWPIILFLIAERLRN---LGRYTFADVASYRLK 141 (549)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHH-HHHHHHHHHHHHHHHHH---cCCccHHHHHHHHcC
Confidence 344456556666666555 6778899888888864 32222111 1111 122223332221 124799998887787
Q ss_pred Cccchhhhh
Q 046376 100 PKLAKSLCV 108 (414)
Q Consensus 100 ~~~~~~~~~ 108 (414)
.+..+.+..
T Consensus 142 s~~~r~l~a 150 (549)
T TIGR02711 142 QRPIRILSA 150 (549)
T ss_pred CcchhHHHH
Confidence 655555543
No 66
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=94.92 E-value=4.8 Score=40.61 Aligned_cols=54 Identities=20% Similarity=0.022 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376 317 RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKP 370 (414)
Q Consensus 317 ~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~ 370 (414)
+.+|...|....+.+..+...+-+.+.++.+.+.+.+ .+-+.++++..+..+|+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 5567888877777766665555588889999999877 77777767766665554
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=94.78 E-value=5.1 Score=40.31 Aligned_cols=23 Identities=17% Similarity=0.054 Sum_probs=17.2
Q ss_pred ccCHHHHHHHhcCCccchhhhhH
Q 046376 87 YSRYMQVAKAAFGPKLAKSLCVF 109 (414)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~~~ 109 (414)
..++.-++|..||.+..++....
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~ 92 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLL 92 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHH
Confidence 46899999999999655554443
No 68
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.65 E-value=4 Score=42.08 Aligned_cols=35 Identities=3% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHcCCchhhhhhhccc-cc-cchhhhhhhhhhhhcCC
Q 046376 336 VAFPFFPSLAPFMGGL-TL-PFKFSYPCLMYNLIKKP 370 (414)
Q Consensus 336 ~~vp~~~~v~~l~Ga~-~~-~l~filP~l~~l~~~k~ 370 (414)
..+++-..+-+++++- .. .++|..|..+-+-..|+
T Consensus 408 l~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 408 LILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc
Confidence 3456655555655543 44 89999999988766443
No 69
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=94.01 E-value=0.12 Score=52.70 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=30.6
Q ss_pred cCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 046376 88 SRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKI 136 (414)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~ 136 (414)
.++.-++|..||.+..++...+..+ .+.|=...-..+.++.+..+.+.
T Consensus 71 l~~~v~sR~~FG~~Gs~l~~~l~~i-~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 71 LPTMVLSRASFGYRGSKLPSLLRAI-SAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp --HHHHTTTTS-TTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchhcchhccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 5788999999998655555444333 33555555667788888887764
No 70
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=93.16 E-value=7.1 Score=39.50 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=46.3
Q ss_pred CceehhhHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHH---HHHHHHHHHHHHhccCCCCCccccCH-----HHHH
Q 046376 24 GNTFSTVFHIVSSGIGIQ-ALFLPVGFATLGWTWGIICLLTA---FAWQIYTIWLLVHLAEPVPGTRYSRY-----MQVA 94 (414)
Q Consensus 24 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~ill~~~---~~~~~~t~~ll~~~~~~~~~~~~~sy-----~~l~ 94 (414)
-|-+++.+....+.+|+| ++++|-|.+..| ..+++.+-+. +..+.|.-..|..-++++++ +.+| -.+-
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~--~g~~~GGP~yyi~ 123 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA--DGVFRGGPMYYIK 123 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC--CCCEecChHHHHH
Confidence 466899999999999998 999999988777 3343333333 33333433333332221111 2224 5677
Q ss_pred HHhcCCccch
Q 046376 95 KAAFGPKLAK 104 (414)
Q Consensus 95 ~~~~G~~~~~ 104 (414)
+...||+.+.
T Consensus 124 ~gl~~k~lg~ 133 (425)
T TIGR00835 124 KGLGMRWLAV 133 (425)
T ss_pred HHhCccHHHH
Confidence 7766664333
No 71
>PRK12488 acetate permease; Provisional
Probab=92.19 E-value=17 Score=38.16 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=45.4
Q ss_pred cCCceehhhHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHH-hccCCCCCccccCHHHHHHHhc
Q 046376 22 RNGNTFSTVFHIVSSGIGIQ-ALFLPVGFATLGWTWGIICLLTAFAWQIY-TIWLLV-HLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~ill~~~~~~~~~-t~~ll~-~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
|+-+++...+.+..+.++++ .++.|....+.|+- +...... ..+.+. ....+. +.++ .+..|.+|.-++=|
T Consensus 67 R~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~----~g~~T~~d~l~~Rf 140 (549)
T PRK12488 67 GGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLRN----LGKYTFADVVSYRL 140 (549)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHH----CCCcchHHHHHHHc
Confidence 44566777777777766644 57899888888874 2222111 111111 112222 2232 12478999888878
Q ss_pred CCccchhhhhH
Q 046376 99 GPKLAKSLCVF 109 (414)
Q Consensus 99 G~~~~~~~~~~ 109 (414)
|++..|.+..+
T Consensus 141 ~s~~~r~laai 151 (549)
T PRK12488 141 AQGPVRLTAAF 151 (549)
T ss_pred CCCcchHHHHH
Confidence 85555555443
No 72
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=91.75 E-value=18 Score=37.47 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=59.8
Q ss_pred hhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376 28 STVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLL---TAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA 103 (414)
Q Consensus 28 ~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~---~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (414)
-..+....+.++ .-.+++|....+.|+...-.... +....-.+-...+.+..++ .+..|..|.-++-||++..
T Consensus 44 v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~~~T~~d~l~~Rf~s~~l 120 (493)
T COG0591 44 VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RGATTIPDFLEARFGSKIL 120 (493)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccHHHHHHHHcCChHH
Confidence 444555555555 78889999999999864322222 3333444445555555532 3467999999999995466
Q ss_pred hhhhhHhHHHhhhhhhHHHHHHHHhhH
Q 046376 104 KSLCVFPVWYLSGGTCIMLIITAGADL 130 (414)
Q Consensus 104 ~~~~~~~~~~~~~g~~i~y~i~~~~~l 130 (414)
+.+..+..+.....-+..-+...+..+
T Consensus 121 r~l~ali~iv~~i~yia~ql~~~~~~~ 147 (493)
T COG0591 121 RILSALIIIVFFIPYIALQLVAGGLLL 147 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666544444443555555555555544
No 73
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=88.87 E-value=9.2 Score=37.68 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCCccccccC------CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHH----HHHHHHHHHHhccCCCC
Q 046376 14 DWLPLTASRN------GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFA----WQIYTIWLLVHLAEPVP 83 (414)
Q Consensus 14 ~~~~~~~~~~------~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~----~~~~t~~ll~~~~~~~~ 83 (414)
.-.|.|+.+. .+.+...-|=..++-|+|-.-=|-.=.+-||+++.+..++-++ .--|....+ +-++.
T Consensus 36 ~~TPA~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~---SvR~~ 112 (376)
T PF02554_consen 36 RPTPAHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA---SVRHK 112 (376)
T ss_pred CCCCeeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh---hhcCC
Confidence 3366665443 3455666677788999999999998899999999887765433 333332222 11222
Q ss_pred CccccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhH
Q 046376 84 GTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADL 130 (414)
Q Consensus 84 ~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l 130 (414)
| +|.+|++++..||+.++.....+.+.+ .-...++....++.+
T Consensus 113 G---~Si~~i~~~~lG~~~~~lf~~f~~~~l-ilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 113 G---KSIGEIAGKYLGKRAKKLFLIFIFFLL-ILVIAVFADVVANTF 155 (376)
T ss_pred C---ccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3 589999999999976666665554433 445555555554433
No 74
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=88.25 E-value=28 Score=34.30 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=40.9
Q ss_pred CHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhh-
Q 046376 89 RYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQ- 167 (414)
Q Consensus 89 sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~- 167 (414)
+-.|..++-+||++.++......+. +.....+-....+..++.+. + .+...+.++.++..+-+.+
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~-~~~~~~~~~~g~a~al~ll~----g---------~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLA-NIATQAAEIIGIAIALNLLF----G---------IPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc----C---------CCcHHHHHHHHHHHHHHHHH
Confidence 5677777778886666555444333 24555555555555554432 1 1234555555544444444
Q ss_pred -hccCccchhhHH
Q 046376 168 -LLPNLNSVLKFS 179 (414)
Q Consensus 168 -l~~~l~~l~~~s 179 (414)
. ++.+.+....
T Consensus 109 ~~-~~y~~~E~~~ 120 (358)
T PF01566_consen 109 SS-GGYRRLERIL 120 (358)
T ss_pred Hh-ccchHHHHHH
Confidence 5 6677765543
No 75
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.29 E-value=34 Score=34.18 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=47.0
Q ss_pred HHHHhhhhhhhhchhHHHHHh-h--ChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhh
Q 046376 31 FHIVSSGIGIQALFLPVGFAT-L--GWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLC 107 (414)
Q Consensus 31 ~~l~~~~iG~GiL~LP~af~~-~--G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~ 107 (414)
+.+..-.+|+|.|-.|-...+ . .|..+++..++.+...-..+.. .-.+.| -+|++++++ +||+.+....
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g---G~~~~l~~~-~g~~f~~lf~ 73 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG---GGYDSLSAR-IGKVFGILFT 73 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC---CCHHHHHHH-hChHHHHHHH
Confidence 345566899999998876443 2 3555555555555544333322 221112 379999987 6777777776
Q ss_pred hHhHHHhhhhhhH
Q 046376 108 VFPVWYLSGGTCI 120 (414)
Q Consensus 108 ~~~~~~~~~g~~i 120 (414)
+..++ ++|-+.
T Consensus 74 ~~~~l--~iGP~~ 84 (378)
T TIGR00796 74 VILYL--TIGPLF 84 (378)
T ss_pred HHHHH--HHHhch
Confidence 66543 355443
No 76
>PRK15015 carbon starvation protein A; Provisional
Probab=86.85 E-value=12 Score=39.69 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=54.8
Q ss_pred ceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH----HHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 25 NTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ----IYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 25 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~----~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
+-+-..-|=..++-|+|-+-=|.--++.||++|.+..++-.++. -|.... .+-++ +-+|.+|++++..|+
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~---~S~R~---~GrSig~ia~~~iG~ 157 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLF---VSTRR---DGRSLGELVKEEMGP 157 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhee---eeecC---CCccHHHHHHHHhhH
Confidence 33445557778899999999999999999999998887643321 111111 11222 235899999999999
Q ss_pred ccchhhhhHhHH
Q 046376 101 KLAKSLCVFPVW 112 (414)
Q Consensus 101 ~~~~~~~~~~~~ 112 (414)
+.+........+
T Consensus 158 ~~~~lfli~i~~ 169 (701)
T PRK15015 158 TAGVIALVACFM 169 (701)
T ss_pred HHHHHHHHHHHH
Confidence 766555444433
No 77
>PRK09395 actP acetate permease; Provisional
Probab=86.37 E-value=47 Score=34.93 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=44.0
Q ss_pred cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|+-++|...+.+..+.++ ...++.|......||.. ........+........+.+-.++ ....|+.|.-++=||+
T Consensus 69 r~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~---~g~~T~~d~l~~Rygs 144 (551)
T PRK09395 69 GGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN---LGKYTFADVASYRLKQ 144 (551)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHcCC
Confidence 345556666666666666 45677888888888742 221111111111112222222221 1347999998888986
Q ss_pred ccchhhh
Q 046376 101 KLAKSLC 107 (414)
Q Consensus 101 ~~~~~~~ 107 (414)
+..+...
T Consensus 145 ~~~r~l~ 151 (551)
T PRK09395 145 GPIRTLS 151 (551)
T ss_pred chHHHHH
Confidence 5455443
No 78
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=85.40 E-value=15 Score=36.60 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=68.8
Q ss_pred HHHhhhhhhhhch----hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhh
Q 046376 32 HIVSSGIGIQALF----LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLC 107 (414)
Q Consensus 32 ~l~~~~iG~GiL~----LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~ 107 (414)
++++++-+-|+-. .|.+. ..|.+.++.+..+...+.+....-..+..+.+ .+..-..+++++.||+..+.++.
T Consensus 198 iiv~~i~~~g~~~~~~~~~~~i-~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~--~~~~~l~~~a~~~~G~~G~~ll~ 274 (378)
T TIGR00796 198 IVVNAIRSRGVTKPKKITKYTI-KAGLIAAVLLAFIYLSLFYLGATSAAAAGDAV--NGAQILSAYSQHLFGSLGSFLLG 274 (378)
T ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHhhhcccC--CcHHHHHHHHHHHcchhHHHHHH
Confidence 3444444445432 33333 34555455555544444444332211111111 12345678999999994444445
Q ss_pred hHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHH
Q 046376 108 VFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFS 179 (414)
Q Consensus 108 ~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s 179 (414)
... ..-|++++++.+...+|.++++.+ ..+...|.++.++....++.. .++++--++
T Consensus 275 i~v-~lACLtT~iGli~~~a~~f~~~~~------------k~~y~~~v~~~~l~s~~ia~~--Gl~~Ii~~~ 331 (378)
T TIGR00796 275 LII-TLACLTTAVGLTTACSEYFHKLVP------------KLSYKTWVIVFTLFSFIVANL--GLTQIISIS 331 (378)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcC------------CCCHHHHHHHHHHHHHHHHHh--CHHHHHHHH
Confidence 444 445899999999998887776532 123455666655555544444 455544433
No 79
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=84.96 E-value=50 Score=34.04 Aligned_cols=79 Identities=13% Similarity=0.033 Sum_probs=40.6
Q ss_pred cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHh-ccCCCC-CccccCHHHHHHHhc
Q 046376 22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVH-LAEPVP-GTRYSRYMQVAKAAF 98 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~-~~~~~~-~~~~~sy~~l~~~~~ 98 (414)
|+-+++-..+.+..+.++ .-.++.|....+.|+.. ........+........+.+ .++..+ ..+..|-.|.-++=|
T Consensus 36 r~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ry 114 (487)
T TIGR02121 36 RSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRF 114 (487)
T ss_pred CcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHh
Confidence 444566666666666655 34667887777778742 22222111112222223322 221100 123568889888889
Q ss_pred CCc
Q 046376 99 GPK 101 (414)
Q Consensus 99 G~~ 101 (414)
|++
T Consensus 115 g~~ 117 (487)
T TIGR02121 115 NDK 117 (487)
T ss_pred CCC
Confidence 864
No 80
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=83.68 E-value=24 Score=36.66 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=55.2
Q ss_pred CCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH----HHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 23 NGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ----IYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~----~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
..+.+...-|=..++-|+|-+-=|---++.||.+|++.+++-.++. -|... -.+-++ +-.|-+|++++..
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L---~~SvR~---~G~Si~~ia~~~l 124 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSL---MLSVRH---GGKSIGEIAGKYL 124 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhhe---eeeecc---CCccHHHHHHHHh
Confidence 3456667777778899999999999999999999998887643332 11100 011122 2358999999999
Q ss_pred CCccchhhhh
Q 046376 99 GPKLAKSLCV 108 (414)
Q Consensus 99 G~~~~~~~~~ 108 (414)
|++.+.+...
T Consensus 125 G~~a~~~~~~ 134 (575)
T COG1966 125 GRTAKVFFLL 134 (575)
T ss_pred hhhHHHHHHH
Confidence 9965555443
No 81
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=79.71 E-value=16 Score=36.96 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=76.8
Q ss_pred hhhhhhhhc---hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhHhH
Q 046376 35 SSGIGIQAL---FLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPV 111 (414)
Q Consensus 35 ~~~iG~GiL---~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~ 111 (414)
+++-.-|.- ..-.....+|++.+..+.++...+.+.+...-....+.. .+..-..+++++.+|+ .|.++-.+..
T Consensus 207 ~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~--~g~~lL~~i~~~~~G~-~G~~ll~iiv 283 (427)
T PF05525_consen 207 NAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDI--NGAELLSQIANHLFGS-AGQILLGIIV 283 (427)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCC--CHHHHHHHHHHHHcCh-hHHHHHHHHH
Confidence 334444444 344556667777677666666665554432211111111 1223467889999999 5665544444
Q ss_pred HHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHH
Q 046376 112 WYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181 (414)
Q Consensus 112 ~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~ 181 (414)
..-|+-++++-....+|.+++..+ ..+.+.|..+++++-..++-+ .++++-.+|..
T Consensus 284 ~lACLTTaIGL~~a~a~yf~~~~~------------kisY~~~v~i~~i~S~~ian~--Gl~~Ii~~s~P 339 (427)
T PF05525_consen 284 FLACLTTAIGLISACAEYFSELFP------------KISYKVWVIIFTIFSFIIANL--GLDQIIKISVP 339 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------------ccChHHHHHHHHHHHHHHHHh--CHHHHHHHHHH
Confidence 445899999999999998888654 123456777766666666655 55555444443
No 82
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=79.14 E-value=84 Score=32.57 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=44.7
Q ss_pred CCCCCCCCCccccccCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHH-hccCC-CC
Q 046376 8 QPNSLDDWLPLTASRNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQ-IYTIWLLV-HLAEP-VP 83 (414)
Q Consensus 8 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~-~~t~~ll~-~~~~~-~~ 83 (414)
+.++.||+- ...|+-+++-..+.+..+.++ ...++.|....+.|+-. . ...+...+. .....++. +.+.. ..
T Consensus 28 ~~~s~~dy~--lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~ 103 (502)
T PRK15419 28 STKNFDDYI--LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEY 103 (502)
T ss_pred cCCChhHhe--eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445442 233445666667777666666 44567898888888752 1 111111111 11111211 11110 00
Q ss_pred CccccCHHHHHHHhcCCc
Q 046376 84 GTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 84 ~~~~~sy~~l~~~~~G~~ 101 (414)
..+..|..|.-++=||++
T Consensus 104 ~~~~~T~~e~l~~Ry~~~ 121 (502)
T PRK15419 104 NNNALTLPDYFTGRFEDK 121 (502)
T ss_pred hcCceeHHHHHHHHhCCC
Confidence 123568888888888863
No 83
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=78.33 E-value=82 Score=32.00 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=47.2
Q ss_pred ceehhhHHHHhhhhhhhhchhHHHHHh---hChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376 25 NTFSTVFHIVSSGIGIQALFLPVGFAT---LGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 25 s~~~a~~~l~~~~iG~GiL~LP~af~~---~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (414)
..+...+.+..-..|+|=|=.|-...+ .-|.++.+.+.+.+..--.-..+- ..+ .| .+++|+++++ ||+
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia--~~~--~~---~~~~~l~~~v-~~~ 75 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIA--VAK--SG---GGIEDLASRV-GPK 75 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--Hhh--cC---CCHHHHhccc-CcH
Confidence 345567788888999999998877543 356667766666555332222111 111 11 2789999885 455
Q ss_pred cchhhhhHh
Q 046376 102 LAKSLCVFP 110 (414)
Q Consensus 102 ~~~~~~~~~ 110 (414)
.+.+...++
T Consensus 76 f~~if~~~i 84 (427)
T PF05525_consen 76 FALIFTILI 84 (427)
T ss_pred HHHHHHHHH
Confidence 666665444
No 84
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=73.06 E-value=1.2e+02 Score=31.24 Aligned_cols=145 Identities=14% Similarity=0.048 Sum_probs=78.1
Q ss_pred ccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHh
Q 046376 87 YSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVS 166 (414)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs 166 (414)
+.|++|....=++.+..|++..+..+...+.-.++-+..+|..+..++. - +...=+++-++++..-.
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g----v---------~~~vgv~ig~ilm~~Yv 169 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG----V---------PYHVGVVIGGILMMVYV 169 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----C---------CceeehhhHhHHHHHHH
Confidence 4799997666666666777765554433344455555566655544432 1 11122334445555556
Q ss_pred hhccCccchhhHHHHHHHHHHH-HHHHHhhhhhcc---------------------------------------------
Q 046376 167 QLLPNLNSVLKFSKTGTVTAVV-YVTLLWALTIRK--------------------------------------------- 200 (414)
Q Consensus 167 ~l~~~l~~l~~~s~~~~~~~~~-~~~i~~~~~~~~--------------------------------------------- 200 (414)
.+ .-++...|...+=.+..++ +.+.......+-
T Consensus 170 v~-GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 170 VL-GGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred Hh-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH
Confidence 67 8888888887655432221 211111111110
Q ss_pred cceeehhhhhhCCCCCCCCCcccchhHHHHHHHHHHHHHhhhhhhhcc
Q 046376 201 GHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYW 248 (414)
Q Consensus 201 g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 248 (414)
|+.-+|.+-- +=..-|+-|.-+|++.++......+|+..-..|+.
T Consensus 249 GTAgLPHil~---RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 249 GTAGLPHILM---RFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred ccCCCCeEEE---EEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111121100 00123666666789999999999999998887765
No 85
>PRK10484 putative transporter; Provisional
Probab=68.85 E-value=1.5e+02 Score=30.83 Aligned_cols=83 Identities=8% Similarity=-0.026 Sum_probs=44.4
Q ss_pred ccCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCccccCHHHHHHHhc
Q 046376 21 SRNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVH-LAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~-~~~~~~~~~~~sy~~l~~~~~ 98 (414)
.|+-+++-..+.+..+.++ ...++.|....+.|+...... .............+.+ .++ .+..|..|.-++-|
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~p~~~r----~~~~T~~e~l~~Ry 111 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWE-VTAAIALIILALIFLPRYLK----SGITTIPDFLEERY 111 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHhc
Confidence 3455666666777666555 556678887777785421111 1111111112222222 222 23578899988889
Q ss_pred CCccchhhhh
Q 046376 99 GPKLAKSLCV 108 (414)
Q Consensus 99 G~~~~~~~~~ 108 (414)
|++..++...
T Consensus 112 g~~~~~~~~~ 121 (523)
T PRK10484 112 DKTTRRIVSI 121 (523)
T ss_pred CchhHHHHHH
Confidence 9875555443
No 86
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=67.27 E-value=1.6e+02 Score=30.45 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=28.5
Q ss_pred cccCHHHHHHHhcCCccchhh---hhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhC
Q 046376 86 RYSRYMQVAKAAFGPKLAKSL---CVFPVWYLSGGTCIMLIITAGADLETLYKIMCG 139 (414)
Q Consensus 86 ~~~sy~~l~~~~~G~~~~~~~---~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~ 139 (414)
...+|+.+.|..||-+...+- ..++.+.- ||. -...++..++.++....+
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~W-yGv---qty~Gg~av~llL~~i~~ 153 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVW-YGV---QTYAGGLAVNLLLGSIFP 153 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHH-HHH---HHHHhHHHHHHHHHHhcc
Confidence 457999999999997544332 22222221 333 124456666666665554
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=66.34 E-value=77 Score=33.34 Aligned_cols=107 Identities=13% Similarity=0.203 Sum_probs=64.0
Q ss_pred ceehhhHH-HHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC---CCCccccCHHHHHHHhcC
Q 046376 25 NTFSTVFH-IVSSGIGIQ-ALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP---VPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 25 s~~~a~~~-l~~~~iG~G-iL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~---~~~~~~~sy~~l~~~~~G 99 (414)
+||+.+|. .+-.+.|.= -|-++|-..|+|...|.+++.....++..|..=..-..++ +.| -.|--++ +..|
T Consensus 31 g~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G---g~yflis-~slg 106 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG---GVYFLIS-RSLG 106 (643)
T ss_pred eeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC---cEEEEEE-eccc
Confidence 46766652 122244432 3558999999999999888888777776654333222221 112 1343333 4567
Q ss_pred CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 046376 100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKI 136 (414)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~ 136 (414)
+..|--+.++-.+.+ .-+|.-|++..+++..++++.
T Consensus 107 ~efggsigiIy~f~~-aVa~am~~vgfaEsv~~l~~~ 142 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFAN-AVATAMYVVGFAESVAHLFET 142 (643)
T ss_pred ccccchhHHHHHHHH-HHHHHHhhhhHHHHHHHHHHh
Confidence 766665555433333 445556999999999998875
No 88
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=61.10 E-value=1e+02 Score=31.34 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=70.2
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHH
Q 046376 46 PVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIIT 125 (414)
Q Consensus 46 P~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~ 125 (414)
-.....+|.+.++.+.++...+.+.+..--....+.+ .+..--....++.+|+ ++.++-.+....-|+.++++-...
T Consensus 225 ~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~--~g~~il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a 301 (439)
T PRK15433 225 TRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSA--NGAAILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCA 301 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC--cHhHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777766666665532111000000 1112245568889999 566554444444579999999988
Q ss_pred HHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHH
Q 046376 126 AGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181 (414)
Q Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~ 181 (414)
.++.+++.++ .+.+.|..+.+++..+++.+ .++++-..+..
T Consensus 302 ~a~~f~~~~~-------------isY~~~v~i~~l~S~~lSn~--G~~~II~~s~P 342 (439)
T PRK15433 302 CAEFFAQYVP-------------LSYRTLVFILGGFSMVVSNL--GLSQLIQISVP 342 (439)
T ss_pred HHHHHHhhcC-------------CcHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 8887766432 23456777777777888777 56665544444
No 89
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=60.87 E-value=1.3e+02 Score=30.44 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=71.6
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHH
Q 046376 47 VGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITA 126 (414)
Q Consensus 47 ~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~ 126 (414)
......|++.++.+..+...+.+....--....+..+| ..=..+..++.||+ .|.++-..+...-|.-++++-+...
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG--~~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~ 300 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANG--GQILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVAC 300 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccch--HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777666666665541110000111112 22356788999999 6766644444455799999999999
Q ss_pred HhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHH
Q 046376 127 GADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181 (414)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~ 181 (414)
+|..++..+ ..+...|..+++++-..++.+ .++++-..|..
T Consensus 301 aefF~~~~p------------~~SY~~~v~if~i~sflvan~--GL~~Ii~isvP 341 (431)
T COG1114 301 AEFFSKLVP------------KLSYKTWVIIFTLISFLVANL--GLEQIIKISVP 341 (431)
T ss_pred HHHHHHhcc------------cccHHHHHHHHHHHHHHHHHh--hHHHHHHHHHH
Confidence 998887654 133456777777766666555 56665555554
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=60.13 E-value=1.3e+02 Score=30.62 Aligned_cols=78 Identities=12% Similarity=0.004 Sum_probs=44.9
Q ss_pred ceehhhHHHHhhhhhhhhchhHHHHHhh---ChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376 25 NTFSTVFHIVSSGIGIQALFLPVGFATL---GWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 25 s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (414)
..+...+.+..-..|+|=|=.|-...+. -|..+.+.+.+.+..- =++.-..-...| .+++|+++++ ||+
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vgl----PlLgiiava~~~---g~~~~l~~rv-~~~ 80 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGL----PVLTVVALAKVG---GGVDSLSTPI-GKV 80 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHhhcC---CCHHHHhhhc-chH
Confidence 4556778888899999999988775432 3555555555444322 222111111111 2688999885 454
Q ss_pred cchhhhhHh
Q 046376 102 LAKSLCVFP 110 (414)
Q Consensus 102 ~~~~~~~~~ 110 (414)
.+.....++
T Consensus 81 f~~~f~~~i 89 (439)
T PRK15433 81 AGVLLATVC 89 (439)
T ss_pred HHHHHHHHH
Confidence 666554444
No 91
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=59.70 E-value=18 Score=36.60 Aligned_cols=172 Identities=12% Similarity=0.104 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHHH-HhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHH
Q 046376 223 KMWRAVKISYMTIGMC-SFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFD 301 (414)
Q Consensus 223 ~~~~~~~~~~~~~~~~-Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~ 301 (414)
+-++.+.-+..+.... ...+...++..|+.-.+ +.-.++-... ++.... .............+++.+.++.+.
T Consensus 222 ~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~---~~~~~il~~~--~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~A 295 (415)
T COG0814 222 NSKKAVRKAILIGSLIALVLYILVGFFVFGCFGS---LVFGNILAAK--EQNISL-LSALAGVINSPILSIALNIFALFA 295 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHcc--CchHHH-HHHHHHhhcchHHHHHHHHHHHHH
Confidence 3344355555554444 56688888889888655 4556654322 222222 223334445555789999999887
Q ss_pred HHHHHhhh----------hccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccc-cchhhhhhhhhhhhcC
Q 046376 302 SLEFRYIF----------KKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTL-PFKFSYPCLMYNLIKK 369 (414)
Q Consensus 302 ~le~~~~~----------~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~-~l~filP~l~~l~~~k 369 (414)
..-..+.. ..++......|..........+.+.++..|. +-...+..|++.. ..+-++|.+++++-++
T Consensus 296 i~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 296 IATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred HHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543321 1111111222444445555667777777775 6667777887878 8899999999997754
Q ss_pred CC--CCcchHH-HHHhHHHHHHHHHHHHHHHHHH
Q 046376 370 PD--QSGTLWW-LNLGLGCFGIILSVMLVVATFW 400 (414)
Q Consensus 370 ~~--~~~~~~~-~~~~li~~g~~~~v~g~~~s~~ 400 (414)
.. ....+++ .+.....+-++.++......+.
T Consensus 376 ~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 376 LIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred hcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 33 2223333 3323444444445444444443
No 92
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=50.46 E-value=1.9e+02 Score=31.21 Aligned_cols=36 Identities=6% Similarity=-0.063 Sum_probs=28.9
Q ss_pred hhCCCCCCCCCcccchhHHHHHHHHHHHHHhhhhhhh
Q 046376 210 GTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTG 246 (414)
Q Consensus 210 ~~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~g 246 (414)
++|..+.|+|++ .++|....+....+++|..+.++-
T Consensus 314 AnMSgELk~PSk-SIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 314 ANMSGELKAPSK-SIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred CCcCccccCccc-cCCccchHHHHHHHHHHHHHHHHh
Confidence 467677799996 578999999999999998877654
No 93
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=44.76 E-value=3.5e+02 Score=27.41 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=36.2
Q ss_pred CceehhhHHHHhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHH---HHHHHHHHHhcc
Q 046376 24 GNTFSTVFHIVSSGIGIQALF-LPVGFATLGWTWGIICLLTAFAW---QIYTIWLLVHLA 79 (414)
Q Consensus 24 ~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~ill~~~~~~---~~~t~~ll~~~~ 79 (414)
-|-+||.+.-+.+.+|+|=.+ ..-|....|- .+++.+-+.+++ +-|+=..|..-+
T Consensus 19 iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~y 77 (416)
T PF01235_consen 19 ISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKY 77 (416)
T ss_pred cChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355789999999999988554 8888888873 255555555444 444444454444
No 94
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=39.32 E-value=39 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhccccCcccC
Q 046376 224 MWRAVKISYMTIGMCSFPLALTGYWAYGNKVT 255 (414)
Q Consensus 224 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~ 255 (414)
|..+..++..+..++....|..-|.+||...+
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 44566777777777777777778889997644
No 95
>CHL00020 psbN photosystem II protein N
Probab=35.66 E-value=36 Score=22.44 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccccCcccC
Q 046376 226 RAVKISYMTIGMCSFPLALTGYWAYGNKVT 255 (414)
Q Consensus 226 ~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~ 255 (414)
.+..++.++..++....|..-|-+||...+
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 355566666776777777777889997544
No 96
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=34.11 E-value=5.3e+02 Score=26.44 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=24.4
Q ss_pred ccCHHHHHHHhcCCc----cchhhhhHhHHHhhhhhhHHHH
Q 046376 87 YSRYMQVAKAAFGPK----LAKSLCVFPVWYLSGGTCIMLI 123 (414)
Q Consensus 87 ~~sy~~l~~~~~G~~----~~~~~~~~~~~~~~~g~~i~y~ 123 (414)
..+.++..+-.+|++ .++.++.+..+.+.+|...+.=
T Consensus 119 ~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLG 159 (453)
T TIGR00842 119 PLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLG 159 (453)
T ss_pred CCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHH
Confidence 345666666666643 5778888877777677666643
No 97
>PRK09928 choline transport protein BetT; Provisional
Probab=34.09 E-value=3.1e+02 Score=29.74 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHH
Q 046376 90 YMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLII 124 (414)
Q Consensus 90 y~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i 124 (414)
|+-+++++-|+ .|+.++.+..+.+.+|...+.=+
T Consensus 181 ~pllG~ri~G~-~G~~IDi~av~~tvfGiaTSLGl 214 (679)
T PRK09928 181 YPIFGKRINGP-IGHSVDIAAVIGTIFGIATTLGI 214 (679)
T ss_pred hhhcCCCCCCC-chhHHHHHHHHHHHHHHHHHHHH
Confidence 33444445554 68888888877777777766533
No 98
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=31.77 E-value=37 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCcccC
Q 046376 227 AVKISYMTIGMCSFPLALTGYWAYGNKVT 255 (414)
Q Consensus 227 ~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~ 255 (414)
+...+..+..++-...|..-|.+||...+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 44455566666667777777889996544
No 99
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=31.65 E-value=88 Score=28.89 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCchhhhhh---------hccccc-cchhhhhhhhhhhhcCCC--CC---cchHHHHHhHHHHHHHHHH
Q 046376 328 TGLISLLSVAFPFFPSLAPF---------MGGLTL-PFKFSYPCLMYNLIKKPD--QS---GTLWWLNLGLGCFGIILSV 392 (414)
Q Consensus 328 v~~~~~iA~~vp~~~~v~~l---------~Ga~~~-~l~filP~l~~l~~~k~~--~~---~~~~~~~~~li~~g~~~~v 392 (414)
.+..+++|.+++.+|.++.+ -||.++ -++++= |..+.|.. .. ...+|.-|+++++|.++..
T Consensus 163 F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 163 FMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHHH
Confidence 34455566666666665544 478877 777655 44332221 11 1245677888889998887
Q ss_pred HHHHH
Q 046376 393 MLVVA 397 (414)
Q Consensus 393 ~g~~~ 397 (414)
-+++.
T Consensus 239 r~~i~ 243 (262)
T KOG4812|consen 239 RGFIN 243 (262)
T ss_pred HHHHh
Confidence 77653
No 100
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=31.54 E-value=6.3e+02 Score=26.47 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=45.4
Q ss_pred ccCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 21 SRNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 21 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
.|+-++|...+.+..+.++ ...++.|......|+-. .................+.+-.++ .+..|-.|.-++=||
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr---~~~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRK---FGKYTVPDFIGDRYY 106 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHH---CCCccHHHHHHHHhC
Confidence 3455677777777777665 55777887777777642 111111111111122333333322 124677887777788
Q ss_pred CccchhhhhH
Q 046376 100 PKLAKSLCVF 109 (414)
Q Consensus 100 ~~~~~~~~~~ 109 (414)
++..++...+
T Consensus 107 s~~~~~~~~i 116 (552)
T TIGR03648 107 SNTARLVAVI 116 (552)
T ss_pred CCceehhHHH
Confidence 6555655433
No 101
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=30.34 E-value=6.3e+02 Score=26.15 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHh--HHHHHHHHhh
Q 046376 90 YMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLL--FICIAIVVSQ 167 (414)
Q Consensus 90 y~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~lpLs~ 167 (414)
|+-++++.-|+ .++.++.+..+.+..|...+- -+....+..-++...+- +.+.....++ ....+.-.|-
T Consensus 164 ~pl~g~~~~g~-~g~~ID~l~i~a~~~Gvatsl-Glg~~qi~~gl~~~~Gi-------~~~~~~~~~ii~~~~~i~~~S~ 234 (485)
T PF02028_consen 164 YPLLGDRINGP-LGKIIDILAIFATIFGVATSL-GLGVPQISAGLSSLFGI-------PNTFGLQIIIIIVITVIFTISA 234 (485)
T ss_dssp HHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCTS-------SSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcccCc-chhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHcCC-------CCchHHHHHHHHHHHHHHHHHH
Confidence 66677777776 788888888777655544443 22233333333332221 1111222222 2222233455
Q ss_pred hccCccc-hhhHHHHHHHHHHH
Q 046376 168 LLPNLNS-VLKFSKTGTVTAVV 188 (414)
Q Consensus 168 l~~~l~~-l~~~s~~~~~~~~~ 188 (414)
. ..+|+ ++++|-......+.
T Consensus 235 ~-~Gl~kGIk~LS~~n~~l~~~ 255 (485)
T PF02028_consen 235 V-SGLDKGIKRLSNINVYLAFA 255 (485)
T ss_dssp H-TTTHHHHHHHHHHHHHHHHH
T ss_pred H-HhHHHHHHHHHHHHHHHHHH
Confidence 5 56644 67777665544333
No 102
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=28.87 E-value=2.1e+02 Score=23.55 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHhhhhhhhhchhHHHHHhhChhH-HHHHHHHHHHHHHHHHHHH
Q 046376 32 HIVSSGIGIQALFLPVGFATLGWTW-GIICLLTAFAWQIYTIWLL 75 (414)
Q Consensus 32 ~l~~~~iG~GiL~LP~af~~~G~~~-g~ill~~~~~~~~~t~~ll 75 (414)
...++.+=.+-.+||..++++|.+- |...+.+.+-...|...+.
T Consensus 65 ~FlT~~~vvSg~aLP~VL~H~~~I~~~A~~l~l~g~~ii~~ti~~ 109 (120)
T PF04133_consen 65 KFLTGFLVVSGFALPIVLAHAGIIQWGACGLSLAGGVIIYATIIG 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444456689999999999875 4555555566666655444
No 103
>PRK09950 putative transporter; Provisional
Probab=28.16 E-value=7.1e+02 Score=25.99 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=24.4
Q ss_pred ccCHHHHHHHhcCCc----cchhhhhHhHHHhhhhhhHHH
Q 046376 87 YSRYMQVAKAAFGPK----LAKSLCVFPVWYLSGGTCIML 122 (414)
Q Consensus 87 ~~sy~~l~~~~~G~~----~~~~~~~~~~~~~~~g~~i~y 122 (414)
..+.++..+-.+|++ .|+.++.+..+.+.+|.+.+-
T Consensus 166 pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSL 205 (506)
T PRK09950 166 GLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISL 205 (506)
T ss_pred CCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 356677777777643 577888887777766666654
No 104
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.23 E-value=1.3e+02 Score=25.51 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=27.3
Q ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Q 046376 374 GTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFS 413 (414)
Q Consensus 374 ~~~~~~~~~li~~g~~~~v~g~~~s~~~ii~~~~~~~~~~ 413 (414)
+..+..|+++-.++++++++|.++..++-- +.+..|+++
T Consensus 38 ~~~k~~H~~L~~la~~~~~~Gl~av~~~h~-~~~~~hf~S 76 (143)
T cd08763 38 RSTKILHGLLHIMALVISLVGLVAVFDYHQ-ANGYPDMYS 76 (143)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCCCcccc
Confidence 334568999999999999999987664432 235556654
No 105
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.57 E-value=1.9e+02 Score=26.33 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=26.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc--ccccCCC
Q 046376 376 LWWLNLGLGCFGIILSVMLVVATFWNLVTKG--VHANFFS 413 (414)
Q Consensus 376 ~~~~~~~li~~g~~~~v~g~~~s~~~ii~~~--~~~~~~~ 413 (414)
.+..|+++-.++++++++|.++..+.. ++. +..|+++
T Consensus 57 ~k~~H~~L~~lAl~~~ivGl~avf~~h-n~~~~~~~hfyS 95 (214)
T cd08764 57 LKLLHAVLHLLAFILAVIGLKAVFDSH-NLAKPPIPNMYS 95 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCcccc
Confidence 456899999999999999987654443 333 5667654
Done!