Query 046376
Match_columns 414
No_of_seqs 120 out of 1152
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 20:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.3 3.3E-11 1.1E-15 120.9 15.1 108 20-131 6-113 (445)
2 3gia_A Uncharacterized protein 98.7 2.9E-07 9.8E-12 92.0 15.5 79 20-101 4-83 (444)
3 4djk_A Probable glutamate/gamm 98.5 1.1E-05 3.7E-10 82.0 22.4 86 20-112 9-97 (511)
4 2jln_A MHP1; hydantoin, transp 97.6 0.0035 1.2E-07 63.5 19.4 84 88-182 88-171 (501)
5 3dh4_A Sodium/glucose cotransp 95.8 0.81 2.8E-05 46.4 20.1 98 4-107 4-102 (530)
6 2xq2_A Sodium/glucose cotransp 94.2 5.8 0.0002 40.6 22.6 81 22-106 49-130 (593)
7 2wsw_A BCCT family betaine/car 58.2 1.4E+02 0.0047 29.7 13.1 37 88-125 179-216 (509)
8 4ain_A Glycine betaine transpo 20.3 3.1E+02 0.011 27.4 8.4 37 89-126 181-218 (539)
9 1afo_A Glycophorin A; integral 12.0 2.8E+02 0.0097 17.0 3.7 23 381-403 12-34 (40)
10 3ro2_B Peptide of nuclear mito 11.5 1.2E+02 0.0039 16.8 1.4 15 7-21 11-25 (28)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.29 E-value=3.3e-11 Score=120.85 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=75.0
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG 99 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G 99 (414)
++|+-+.++.++..+.+++|+|++.+|...++.|.. +.+..++.++..........|...+.|. .-.+-+.+++.+|
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFG 82 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSC
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcC
Confidence 345678899999999999999999999999999964 6777777777777777777776543332 2355667789999
Q ss_pred CccchhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376 100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLE 131 (414)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 131 (414)
|..+....+...+.. .....++....++.++
T Consensus 83 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 113 (445)
T 3l1l_A 83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLS 113 (445)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 977777666554432 3334445544454443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.68 E-value=2.9e-07 Score=91.99 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=58.3
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF 98 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~ 98 (414)
++|+-+.++..+..+++++|+|++.+|.. ...+|- .+.+..++.+++.......+.|...+.|. .-..-+.+++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~--~Gg~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS--NAGPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC--TTTHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHhHHHHh
Confidence 34566888999999999999999997744 555675 56677777777777777778887665443 234557788889
Q ss_pred CCc
Q 046376 99 GPK 101 (414)
Q Consensus 99 G~~ 101 (414)
|++
T Consensus 81 G~~ 83 (444)
T 3gia_A 81 GDN 83 (444)
T ss_dssp CSS
T ss_pred Ccc
Confidence 985
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.52 E-value=1.1e-05 Score=81.99 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=49.0
Q ss_pred cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhccC--CCCCccccCHHHHHHH
Q 046376 20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ-IYTIWLLVHLAE--PVPGTRYSRYMQVAKA 96 (414)
Q Consensus 20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~-~~t~~ll~~~~~--~~~~~~~~sy~~l~~~ 96 (414)
.+|+-+.++.++-.++.++| +.++|. .+..|.. +++..++.+++. ......+.|... ..| .-..-..+++
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P---~GG~y~~~~~ 81 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE---EGGVFAWVSN 81 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC---CCChhhhHHh
Confidence 45667888888888888885 567775 5677754 333333333322 224555566555 444 2345567788
Q ss_pred hcCCccchhhhhHhHH
Q 046376 97 AFGPKLAKSLCVFPVW 112 (414)
Q Consensus 97 ~~G~~~~~~~~~~~~~ 112 (414)
.+|++++....+...+
T Consensus 82 ~~g~~~g~~~g~~~~~ 97 (511)
T 4djk_A 82 TLGPRWGFAAISFGYL 97 (511)
T ss_dssp HHCHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHH
Confidence 8999777655544433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.61 E-value=0.0035 Score=63.55 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=54.1
Q ss_pred cCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhh
Q 046376 88 SRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQ 167 (414)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~ 167 (414)
.+|.++.|..||++..++...+..+ .++|-...-....++.++.+.+...+. .+...+.++++++.++..+
T Consensus 88 l~~~v~~R~~FG~~Gs~i~~ll~~i-~~igw~~v~~~~gg~al~~~~~~~~g~--------~~~~v~~~i~~~l~~~~~~ 158 (501)
T 2jln_A 88 INFTVAARMPFGIRGSLIPITLKAL-LSLFWFGFQTWLGALALDEITRLLTGF--------TNLPLWIVIFGAIQVVTTF 158 (501)
T ss_dssp CCHHHHTTTTSCTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHT
T ss_pred CChhhhhHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc--------chHHHHHHHHHHHHHHHHH
Confidence 5799999999999766666555444 346666666777888888776543321 1123456667777777765
Q ss_pred hccCccchhhHHHHH
Q 046376 168 LLPNLNSVLKFSKTG 182 (414)
Q Consensus 168 l~~~l~~l~~~s~~~ 182 (414)
. .++.++++....
T Consensus 159 ~--G~~~i~~~~~~~ 171 (501)
T 2jln_A 159 Y--GITFIRWMNVFA 171 (501)
T ss_dssp T--HHHHHHHHHHHH
T ss_pred h--CHHHHHHHHHHH
Confidence 4 566666655544
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=95.76 E-value=0.81 Score=46.35 Aligned_cols=98 Identities=9% Similarity=0.015 Sum_probs=52.3
Q ss_pred hhccCCCCCCCCCccccccCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 046376 4 VQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPV 82 (414)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~ 82 (414)
-.|++.++.||+.- ..|+-+++...+.+..+.++ ...+++|....+.|+......... ++.-......+.....+
T Consensus 4 ~~~~~~~~~~dy~l--aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~- 79 (530)
T 3dh4_A 4 XXXXXXXXXXXXXX--AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE- 79 (530)
T ss_dssp HHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH-
T ss_pred ccccccccccccCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH-
Confidence 34444455555522 23455667777777766665 567789998888887532111110 00001111122222221
Q ss_pred CCccccCHHHHHHHhcCCccchhhh
Q 046376 83 PGTRYSRYMQVAKAAFGPKLAKSLC 107 (414)
Q Consensus 83 ~~~~~~sy~~l~~~~~G~~~~~~~~ 107 (414)
.+..|..|.-++-||++.+.+..
T Consensus 80 --~~~~T~~e~l~~Rfg~~~~~~~a 102 (530)
T 3dh4_A 80 --KGIYTIPEFVEKRFNKKLKTILA 102 (530)
T ss_dssp --TTCCSHHHHHHHHTCHHHHHHHH
T ss_pred --cCCccHHHHHHHHcCcHHHHHHH
Confidence 23579999999999986444433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=94.17 E-value=5.8 Score=40.61 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=42.1
Q ss_pred cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376 22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP 100 (414)
Q Consensus 22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (414)
|+-+++...+.+..+.++ ...++.|..-.+.|+.............-......+-+.++ .+..|..|.-++=||+
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r----~~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIE----KGIYTIPEFVEKRFNK 124 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHH----TTCCSHHHHHHHHTCH
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCcHHHHHHHccC
Confidence 445667677777665555 55568898888888743211111000000111111222222 2357899998888998
Q ss_pred ccchhh
Q 046376 101 KLAKSL 106 (414)
Q Consensus 101 ~~~~~~ 106 (414)
+.+.+.
T Consensus 125 ~~~~~~ 130 (593)
T 2xq2_A 125 KLKTIL 130 (593)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 644443
No 7
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=58.19 E-value=1.4e+02 Score=29.74 Aligned_cols=37 Identities=16% Similarity=-0.022 Sum_probs=28.5
Q ss_pred cCHHHHH-HHhcCCccchhhhhHhHHHhhhhhhHHHHHH
Q 046376 88 SRYMQVA-KAAFGPKLAKSLCVFPVWYLSGGTCIMLIIT 125 (414)
Q Consensus 88 ~sy~~l~-~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~ 125 (414)
.=|+=++ ++..|+ .|+.++.+..+.+.+|...+.=..
T Consensus 179 ~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLGlg 216 (509)
T 2wsw_A 179 TLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLGLA 216 (509)
T ss_dssp GCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3478888 888887 799999888888878877765333
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=20.33 E-value=3.1e+02 Score=27.40 Aligned_cols=37 Identities=22% Similarity=0.084 Sum_probs=28.0
Q ss_pred CHHHHHHH-hcCCccchhhhhHhHHHhhhhhhHHHHHHH
Q 046376 89 RYMQVAKA-AFGPKLAKSLCVFPVWYLSGGTCIMLIITA 126 (414)
Q Consensus 89 sy~~l~~~-~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~ 126 (414)
=|+=++++ +.|+ .|+.++.+..+.+.+|...+.=..+
T Consensus 181 l~PllG~r~~~G~-~G~~IDilav~atv~GvatSLGlg~ 218 (539)
T 4ain_A 181 FVPLIGEKGAEGW-LGKLIDILAIIATVFGTACSLGLGA 218 (539)
T ss_dssp GHHHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhcCCCccCCc-chhhhHHHHHHHHHHHHhhhHHHHH
Confidence 37778887 7887 7999998888888788777754333
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=11.99 E-value=2.8e+02 Score=16.97 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 046376 381 LGLGCFGIILSVMLVVATFWNLV 403 (414)
Q Consensus 381 ~~li~~g~~~~v~g~~~s~~~ii 403 (414)
..++++|+..++.|+.-.+.--+
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888876654443
No 10
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=11.50 E-value=1.2e+02 Score=16.78 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=10.8
Q ss_pred cCCCCCCCCCccccc
Q 046376 7 LQPNSLDDWLPLTAS 21 (414)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (414)
-.|+.+|+|....+-
T Consensus 11 depeqlddw~riael 25 (28)
T 3ro2_B 11 DEPEQLDDWNRIAEL 25 (28)
T ss_dssp CCCCCCCCTTTGGGC
T ss_pred CCcccchhHHHHHHH
Confidence 358888999776543
Done!