Query 046376
Match_columns 414
No_of_seqs 120 out of 1152
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 20:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sfea1 a.4.2.1 (A:93-176) Ada 8.5 1.2E+02 0.0084 20.4 2.8 26 82-107 15-40 (84)
2 d2a65a1 f.54.1.1 (A:5-513) Na( 8.1 6.2E+02 0.045 22.1 22.1 107 27-137 8-119 (509)
3 d1rh5b_ f.23.28.1 (B:) Preprot 8.1 58 0.0042 20.3 0.9 29 217-249 16-44 (56)
4 d1rk8c_ b.72.3.1 (C:) Pym (Wit 6.3 47 0.0034 17.9 -0.2 15 14-28 9-23 (33)
5 d1qnta1 a.4.2.1 (A:92-176) O6- 5.7 1.6E+02 0.011 19.6 2.3 23 85-107 18-40 (85)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 4.2 2.3E+02 0.017 14.6 1.7 16 46-61 12-27 (32)
7 d1ppjc1 f.32.1.1 (C:261-379) M 3.6 6E+02 0.044 17.6 4.5 17 378-394 63-79 (119)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.0 5.9E+02 0.043 20.2 4.3 30 40-69 14-43 (248)
9 d3cx5c1 f.32.1.1 (C:262-385) M 2.9 7.9E+02 0.057 17.0 4.6 16 379-394 64-79 (124)
10 d1mgta1 a.4.2.1 (A:89-169) O6- 2.8 2.6E+02 0.019 18.3 1.4 20 85-106 19-38 (81)
No 1
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=8.47 E-value=1.2e+02 Score=20.35 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=16.6
Q ss_pred CCCccccCHHHHHHHhcCCccchhhh
Q 046376 82 VPGTRYSRYMQVAKAAFGPKLAKSLC 107 (414)
Q Consensus 82 ~~~~~~~sy~~l~~~~~G~~~~~~~~ 107 (414)
.|..+..||+|+|+.+--++..+.+.
T Consensus 15 Ip~G~v~TYg~iA~~~g~~~a~RaVg 40 (84)
T d1sfea1 15 IPCGETVSYQQLANAIGKPKAVRAVA 40 (84)
T ss_dssp SCTTCCEEHHHHHHHTTCTTCHHHHH
T ss_pred CCCCCeeeHHHHHHHhCCcccHHHHH
Confidence 34345789999998875444445443
No 2
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=8.09 E-value=6.2e+02 Score=22.09 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=60.3
Q ss_pred ehhhHHHHhhhhhhh-hchhHHHHHhh-Chh---HHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376 27 FSTVFHIVSSGIGIQ-ALFLPVGFATL-GWT---WGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK 101 (414)
Q Consensus 27 ~~a~~~l~~~~iG~G-iL~LP~af~~~-G~~---~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (414)
.+-++..+...+|.| +.-.||-..+- |.. +=.+++++++.=..+-=..+.+..++ + ....++.++....+.+
T Consensus 8 ~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~--g-~i~~~~~i~~~~~~~~ 84 (509)
T d2a65a1 8 LGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA--Q-GHGTTPAIFYLLWRNR 84 (509)
T ss_dssp HHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--T-TCCSHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC--C-cccHHHHHHHHhccCc
Confidence 455677778888865 55599986554 522 11222222222222222233444332 2 2457888888877655
Q ss_pred cchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHH
Q 046376 102 LAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIM 137 (414)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~ 137 (414)
..+.+.....+. ++..++-|.+..+-.+.-+....
T Consensus 85 ~~~giG~~~~~~-~~~i~~yy~vi~~w~l~Y~~~s~ 119 (509)
T d2a65a1 85 FAKILGVFGLWI-PLVVAIYYVYIESWTLGFAIKFL 119 (509)
T ss_dssp HHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666655543 36677778888887776655544
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.07 E-value=58 Score=20.25 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCCCcccchhHHHHHHHHHHHHHhhhhhhhccc
Q 046376 217 FNPSSQKMWRAVKISYMTIGMCSFPLALTGYWA 249 (414)
Q Consensus 217 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 249 (414)
++|+++-+++....+ .+-.+.+|..||..
T Consensus 16 ~KP~~~Ef~~ia~v~----~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVT----ALGISLLGIIGYII 44 (56)
T ss_dssp ECCCHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 468877766654433 22335566666654
No 4
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.28 E-value=47 Score=17.90 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.6
Q ss_pred CCCccccccCCceeh
Q 046376 14 DWLPLTASRNGNTFS 28 (414)
Q Consensus 14 ~~~~~~~~~~~s~~~ 28 (414)
.+.|..|++.|+|..
T Consensus 9 ~~i~atqRpDGtWRK 23 (33)
T d1rk8c_ 9 KFIPATKRPDGTWRK 23 (33)
T ss_dssp EEECCEECTTSCEEC
T ss_pred cEeccccCCCCcccc
Confidence 458888888888865
No 5
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.70 E-value=1.6e+02 Score=19.64 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=15.5
Q ss_pred ccccCHHHHHHHhcCCccchhhh
Q 046376 85 TRYSRYMQVAKAAFGPKLAKSLC 107 (414)
Q Consensus 85 ~~~~sy~~l~~~~~G~~~~~~~~ 107 (414)
.+..||+|+|+.+--++..+.+.
T Consensus 18 G~v~TYg~iA~~~g~p~aaRaVg 40 (85)
T d1qnta1 18 GEVISYQQLAALAGNPKAARAVG 40 (85)
T ss_dssp TCCEEHHHHHHHTTCTTCHHHHH
T ss_pred CCcccHHHHHHHcCCcchHHHHH
Confidence 35689999998865444445444
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.22 E-value=2.3e+02 Score=14.65 Aligned_cols=16 Identities=31% Similarity=0.872 Sum_probs=9.7
Q ss_pred HHHHHhhChhHHHHHH
Q 046376 46 PVGFATLGWTWGIICL 61 (414)
Q Consensus 46 P~af~~~G~~~g~ill 61 (414)
.+..--.||..|.+++
T Consensus 12 sfglifvgwglgalll 27 (32)
T d2e74f1 12 SFGLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhHHHHHHh
Confidence 3444556777776655
No 7
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.61 E-value=6e+02 Score=17.62 Aligned_cols=17 Identities=18% Similarity=-0.091 Sum_probs=8.0
Q ss_pred HHHHhHHHHHHHHHHHH
Q 046376 378 WLNLGLGCFGIILSVML 394 (414)
Q Consensus 378 ~~~~~li~~g~~~~v~g 394 (414)
...|..++-.++++.+|
T Consensus 63 ~~fw~fv~~fi~L~wlG 79 (119)
T d1ppjc1 63 CLFWALVADLLTLTWIG 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444444444555444
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=5.9e+02 Score=20.23 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=23.0
Q ss_pred hhhchhHHHHHhhChhHHHHHHHHHHHHHH
Q 046376 40 IQALFLPVGFATLGWTWGIICLLTAFAWQI 69 (414)
Q Consensus 40 ~GiL~LP~af~~~G~~~g~ill~~~~~~~~ 69 (414)
.++.+.|.++++.-|..+.+++++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 43 (248)
T d2r6gf1 14 LVGYLVVLMYAQGEYLFAITTLILSSAGLY 43 (248)
T ss_dssp HHHHTHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHheEE
Confidence 345678999999999988888777666553
No 9
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.90 E-value=7.9e+02 Score=16.99 Aligned_cols=16 Identities=6% Similarity=-0.145 Sum_probs=6.7
Q ss_pred HHHhHHHHHHHHHHHH
Q 046376 379 LNLGLGCFGIILSVML 394 (414)
Q Consensus 379 ~~~~li~~g~~~~v~g 394 (414)
..|..+...++++.+|
T Consensus 64 ~fw~fv~~fi~LtwlG 79 (124)
T d3cx5c1 64 FFFIFVFNFVLLGQIG 79 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3444444444444443
No 10
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=2.78 E-value=2.6e+02 Score=18.31 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=13.6
Q ss_pred ccccCHHHHHHHhcCCccchhh
Q 046376 85 TRYSRYMQVAKAAFGPKLAKSL 106 (414)
Q Consensus 85 ~~~~sy~~l~~~~~G~~~~~~~ 106 (414)
.+..||+|+|+.+ |. ..+.+
T Consensus 19 G~v~TYg~iA~~~-g~-~~RaV 38 (81)
T d1mgta1 19 GSVITYGDLAKAL-NT-SPRAV 38 (81)
T ss_dssp TCCEEHHHHHHHT-TS-CHHHH
T ss_pred CCeEeHHHHHHHc-CC-cHHHH
Confidence 3568999999875 44 44543
Done!