BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046380
         (434 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
 pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
           Deformylase, A Novel Cancer Target
          Length = 183

 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 91  QIDDELKHLITRFVAKEILRG-KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLT 149
           Q+ D +   +   V +  L G +LQ+L   +   +    C   + P++        + L 
Sbjct: 9   QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 68

Query: 150 ---IRHCKIGAYQKNTVMGLTLSNFFNPSVR----RLVV--RGCMALQGFEMDAPRLNYF 200
               R C         +    L  F NPS+R    RLV    GC ++ GF    PR    
Sbjct: 69  EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 128

Query: 201 QCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF 252
           Q SG+    E  V++   +  R +      ++ M  L+  +F    ++ RTF
Sbjct: 129 QISGLDPNGEQVVWQASGWAARII------QHEMDHLQGCLF-IDKMDSRTF 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,195,184
Number of Sequences: 62578
Number of extensions: 483600
Number of successful extensions: 1122
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 3
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)