Query 046380
Match_columns 434
No_of_seqs 175 out of 2169
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 2.1E-19 4.4E-24 161.0 1.7 280 7-361 98-391 (419)
2 KOG4341 F-box protein containi 99.7 1.3E-19 2.8E-24 169.1 -1.5 347 9-394 74-441 (483)
3 PLN00113 leucine-rich repeat r 99.3 5.4E-12 1.2E-16 139.3 8.9 251 111-391 93-368 (968)
4 PLN00113 leucine-rich repeat r 99.2 4.5E-11 9.7E-16 132.0 10.3 132 232-369 233-368 (968)
5 PLN03210 Resistant to P. syrin 99.2 1.5E-10 3.3E-15 129.0 12.3 106 283-396 800-910 (1153)
6 KOG4341 F-box protein containi 99.1 4.1E-13 8.9E-18 126.0 -7.9 277 111-410 138-436 (483)
7 PLN03210 Resistant to P. syrin 99.1 5.3E-10 1.1E-14 124.7 14.2 229 133-394 579-840 (1153)
8 KOG4194 Membrane glycoprotein 99.0 7.3E-11 1.6E-15 115.3 -0.0 254 111-389 149-449 (873)
9 cd00116 LRR_RI Leucine-rich re 98.9 8.9E-10 1.9E-14 105.8 4.5 135 235-370 137-291 (319)
10 KOG4194 Membrane glycoprotein 98.9 8.9E-10 1.9E-14 107.9 4.3 217 145-390 104-352 (873)
11 PF12937 F-box-like: F-box-lik 98.9 1.5E-09 3.3E-14 72.4 3.3 35 7-41 1-35 (47)
12 cd00116 LRR_RI Leucine-rich re 98.8 3.8E-09 8.2E-14 101.4 5.6 240 145-393 25-292 (319)
13 KOG0444 Cytoskeletal regulator 98.8 4.6E-10 9.9E-15 110.6 -3.3 243 111-394 126-377 (1255)
14 KOG0444 Cytoskeletal regulator 98.7 6.6E-10 1.4E-14 109.5 -5.2 210 145-389 80-301 (1255)
15 KOG2120 SCF ubiquitin ligase, 98.7 8.5E-10 1.8E-14 99.8 -4.2 180 175-369 186-375 (419)
16 PRK15387 E3 ubiquitin-protein 98.6 2.2E-07 4.8E-12 97.7 11.1 118 111-276 201-318 (788)
17 KOG3207 Beta-tubulin folding c 98.6 3.1E-08 6.7E-13 94.2 2.8 204 145-369 123-338 (505)
18 KOG0618 Serine/threonine phosp 98.5 3.2E-09 6.9E-14 109.2 -5.6 228 99-368 255-487 (1081)
19 PRK15370 E3 ubiquitin-protein 98.5 1.9E-07 4.1E-12 98.5 6.5 221 110-389 177-398 (754)
20 PRK15387 E3 ubiquitin-protein 98.5 6.2E-07 1.4E-11 94.3 9.7 218 111-391 222-457 (788)
21 PF00646 F-box: F-box domain; 98.4 7.5E-08 1.6E-12 64.5 0.9 37 7-43 3-39 (48)
22 KOG1909 Ran GTPase-activating 98.4 4.4E-08 9.5E-13 90.7 -1.1 87 304-391 211-310 (382)
23 KOG3207 Beta-tubulin folding c 98.4 5.3E-08 1.1E-12 92.6 -0.8 42 168-215 115-158 (505)
24 smart00256 FBOX A Receptor for 98.3 5.8E-07 1.3E-11 57.9 3.5 33 10-42 1-33 (41)
25 KOG1909 Ran GTPase-activating 98.2 3.2E-07 6.8E-12 85.1 1.4 88 305-393 184-284 (382)
26 KOG1947 Leucine rich repeat pr 98.2 2.7E-07 5.8E-12 93.7 -0.6 210 172-399 186-421 (482)
27 PRK15370 E3 ubiquitin-protein 98.2 1.2E-06 2.7E-11 92.4 3.6 201 111-369 199-400 (754)
28 KOG1947 Leucine rich repeat pr 98.1 1.1E-07 2.3E-12 96.7 -4.6 206 169-396 209-444 (482)
29 KOG0618 Serine/threonine phosp 98.1 2E-07 4.4E-12 96.2 -3.5 88 173-277 240-327 (1081)
30 KOG0472 Leucine-rich repeat pr 98.1 1.3E-07 2.9E-12 89.0 -5.3 40 327-369 501-540 (565)
31 PF14580 LRR_9: Leucine-rich r 98.0 2.8E-06 6E-11 73.4 2.9 62 305-367 87-150 (175)
32 PF14580 LRR_9: Leucine-rich r 98.0 5.9E-06 1.3E-10 71.4 4.8 56 145-216 44-101 (175)
33 KOG3665 ZYG-1-like serine/thre 97.9 6.5E-06 1.4E-10 86.2 2.5 158 144-366 123-284 (699)
34 KOG2982 Uncharacterized conser 97.6 5.2E-05 1.1E-09 69.3 3.6 227 145-392 47-289 (418)
35 KOG0617 Ras suppressor protein 97.6 9.7E-07 2.1E-11 74.0 -7.1 150 111-294 33-182 (264)
36 KOG0472 Leucine-rich repeat pr 97.5 3.2E-07 7E-12 86.5 -11.6 20 257-276 203-222 (565)
37 KOG1259 Nischarin, modulator o 97.5 1.9E-05 4.1E-10 72.2 -0.2 80 132-218 172-252 (490)
38 KOG0617 Ras suppressor protein 97.5 1.5E-06 3.2E-11 73.0 -6.8 155 137-317 28-184 (264)
39 KOG3665 ZYG-1-like serine/thre 97.4 6.8E-05 1.5E-09 78.7 2.8 162 202-393 121-289 (699)
40 COG5238 RNA1 Ran GTPase-activa 97.4 9.8E-05 2.1E-09 66.7 2.9 131 252-392 112-255 (388)
41 KOG4658 Apoptotic ATPase [Sign 97.2 0.00047 1E-08 74.4 5.6 100 145-270 525-628 (889)
42 KOG4237 Extracellular matrix p 97.2 0.00015 3.3E-09 68.8 1.4 84 304-391 272-358 (498)
43 KOG1859 Leucine-rich repeat pr 97.1 4E-05 8.8E-10 77.8 -3.1 166 77-277 53-226 (1096)
44 KOG4658 Apoptotic ATPase [Sign 97.1 0.00042 9E-09 74.8 3.8 41 170-215 567-607 (889)
45 COG5238 RNA1 Ran GTPase-activa 96.9 0.00092 2E-08 60.6 3.8 112 257-369 154-284 (388)
46 PRK15386 type III secretion pr 96.7 0.0049 1.1E-07 60.2 7.5 53 257-315 49-103 (426)
47 PF13855 LRR_8: Leucine rich r 96.7 0.00087 1.9E-08 47.1 1.6 56 145-214 3-60 (61)
48 KOG1259 Nischarin, modulator o 96.6 0.0003 6.5E-09 64.5 -1.3 124 145-296 286-410 (490)
49 KOG2982 Uncharacterized conser 96.5 0.0012 2.6E-08 60.6 2.0 121 250-393 61-187 (418)
50 PF13855 LRR_8: Leucine rich r 96.5 0.002 4.4E-08 45.2 2.6 57 111-183 1-58 (61)
51 PRK15386 type III secretion pr 96.3 0.012 2.6E-07 57.5 7.5 161 200-393 49-214 (426)
52 KOG0281 Beta-TrCP (transducin 96.2 0.0019 4.1E-08 60.0 1.0 38 3-40 71-112 (499)
53 COG4886 Leucine-rich repeat (L 95.6 0.0093 2E-07 59.1 3.2 166 145-341 118-287 (394)
54 COG4886 Leucine-rich repeat (L 95.5 0.006 1.3E-07 60.4 1.7 176 169-369 111-289 (394)
55 PLN03150 hypothetical protein; 95.2 0.021 4.6E-07 60.0 4.4 40 255-295 485-525 (623)
56 PF12799 LRR_4: Leucine Rich r 94.6 0.032 6.9E-07 36.2 2.6 35 175-215 2-36 (44)
57 KOG2739 Leucine-rich acidic nu 94.6 0.01 2.2E-07 53.7 0.2 100 258-363 41-149 (260)
58 KOG2997 F-box protein FBX9 [Ge 94.5 0.015 3.3E-07 53.7 1.1 35 5-39 105-144 (366)
59 PLN03215 ascorbic acid mannose 94.4 0.031 6.7E-07 54.0 3.1 35 7-41 4-39 (373)
60 KOG4237 Extracellular matrix p 94.4 0.0027 5.8E-08 60.5 -4.1 226 111-354 67-372 (498)
61 PLN03150 hypothetical protein; 94.4 0.032 7E-07 58.7 3.4 106 145-271 420-526 (623)
62 KOG2739 Leucine-rich acidic nu 94.3 0.012 2.6E-07 53.3 0.0 86 283-370 41-129 (260)
63 PF07723 LRR_2: Leucine Rich R 94.2 0.063 1.4E-06 30.4 2.8 23 175-203 1-26 (26)
64 KOG0532 Leucine-rich repeat (L 92.7 0.0039 8.4E-08 62.2 -6.3 155 131-317 87-245 (722)
65 KOG3864 Uncharacterized conser 92.6 0.048 1.1E-06 47.6 1.0 69 133-217 92-165 (221)
66 PF12799 LRR_4: Leucine Rich r 92.6 0.07 1.5E-06 34.6 1.5 30 145-183 3-33 (44)
67 KOG1644 U2-associated snRNP A' 92.4 0.17 3.8E-06 44.2 4.0 86 144-249 65-154 (233)
68 smart00367 LRR_CC Leucine-rich 92.4 0.14 2.9E-06 28.9 2.3 25 330-354 1-25 (26)
69 KOG3864 Uncharacterized conser 91.8 0.04 8.7E-07 48.1 -0.5 67 327-393 121-190 (221)
70 KOG0531 Protein phosphatase 1, 90.9 0.029 6.2E-07 56.0 -2.7 103 145-275 97-201 (414)
71 KOG2123 Uncharacterized conser 90.2 0.027 5.8E-07 51.5 -3.2 80 285-369 19-100 (388)
72 KOG2123 Uncharacterized conser 89.4 0.045 9.7E-07 50.1 -2.4 54 145-215 43-100 (388)
73 KOG0274 Cdc4 and related F-box 89.2 0.18 3.8E-06 51.8 1.4 38 3-40 104-141 (537)
74 PF13504 LRR_7: Leucine rich r 89.2 0.22 4.7E-06 25.0 1.0 17 260-276 1-17 (17)
75 KOG1644 U2-associated snRNP A' 88.9 0.29 6.2E-06 42.9 2.2 86 255-341 59-150 (233)
76 KOG0531 Protein phosphatase 1, 88.5 0.083 1.8E-06 52.7 -1.5 105 170-294 91-195 (414)
77 KOG1859 Leucine-rich repeat pr 87.7 0.014 3E-07 60.0 -7.4 107 169-294 182-288 (1096)
78 PF13013 F-box-like_2: F-box-l 87.1 0.63 1.4E-05 36.7 3.0 30 6-35 21-50 (109)
79 PF08387 FBD: FBD; InterPro: 83.1 1.5 3.1E-05 29.4 2.9 35 331-365 14-50 (51)
80 PF00560 LRR_1: Leucine Rich R 82.7 0.63 1.4E-05 25.0 0.8 17 261-277 1-17 (22)
81 PF13516 LRR_6: Leucine Rich r 82.1 1.5 3.2E-05 24.0 2.2 21 331-352 2-22 (24)
82 KOG0532 Leucine-rich repeat (L 81.1 0.37 8.1E-06 48.6 -0.8 137 131-295 133-270 (722)
83 KOG4579 Leucine-rich repeat (L 71.3 0.76 1.7E-05 37.9 -1.3 55 145-215 55-112 (177)
84 smart00579 FBD domain in FBox 68.9 6.5 0.00014 28.2 3.3 39 331-369 5-45 (72)
85 smart00369 LRR_TYP Leucine-ric 66.8 4.5 9.7E-05 22.4 1.6 20 259-278 1-20 (26)
86 smart00370 LRR Leucine-rich re 66.8 4.5 9.7E-05 22.4 1.6 20 259-278 1-20 (26)
87 KOG4579 Leucine-rich repeat (L 50.4 3 6.5E-05 34.5 -1.4 94 99-215 41-135 (177)
88 smart00368 LRR_RI Leucine rich 44.9 29 0.00062 19.7 2.6 22 331-353 2-23 (28)
89 KOG3926 F-box proteins [Amino 44.9 6 0.00013 36.2 -0.5 49 6-54 201-256 (332)
90 PF13306 LRR_5: Leucine rich r 44.8 25 0.00055 27.9 3.3 76 284-365 11-89 (129)
91 KOG3763 mRNA export factor TAP 42.1 18 0.00038 36.9 2.2 87 257-363 215-307 (585)
92 KOG4308 LRR-containing protein 41.2 0.26 5.6E-06 49.9 -10.9 173 195-371 107-304 (478)
93 PF13306 LRR_5: Leucine rich r 39.5 36 0.00078 27.0 3.4 37 170-212 31-67 (129)
94 smart00364 LRR_BAC Leucine-ric 34.3 23 0.0005 20.0 0.9 18 260-277 2-19 (26)
95 smart00365 LRR_SD22 Leucine-ri 28.4 37 0.00081 19.1 1.2 17 259-275 1-17 (26)
96 KOG3763 mRNA export factor TAP 26.8 47 0.001 34.0 2.3 37 171-213 215-254 (585)
97 PF05725 FNIP: FNIP Repeat; I 24.3 99 0.0021 19.6 2.8 10 378-387 33-42 (44)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.1e-19 Score=160.96 Aligned_cols=280 Identities=19% Similarity=0.190 Sum_probs=157.4
Q ss_pred CCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc------cccCCeeEEecccccCCcccchhhHHHHHHHHHhccCCCc
Q 046380 7 ISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSH------WLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDN 80 (434)
Q Consensus 7 is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 80 (434)
...|||||+..||+.|+.+|+++++.|||||.++ |.. ++.......+ +...++++ +|
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p----------~~l~~l~~--rg-- 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP----------DVLGRLLS--RG-- 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh----------hHHHHHHh--CC--
Confidence 5689999999999999999999999999999865 433 3332222211 22222322 12
Q ss_pred ccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccc
Q 046380 81 MQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQK 160 (434)
Q Consensus 81 l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~ 160 (434)
+..++ +... ..+...+..... . ++.+++.++++... .....+.--+..|.+ |+.|.|.|..++-
T Consensus 161 V~v~R---lar~-~~~~prlae~~~-~-frsRlq~lDLS~s~------it~stl~~iLs~C~k-Lk~lSlEg~~LdD--- 224 (419)
T KOG2120|consen 161 VIVFR---LARS-FMDQPRLAEHFS-P-FRSRLQHLDLSNSV------ITVSTLHGILSQCSK-LKNLSLEGLRLDD--- 224 (419)
T ss_pred eEEEE---cchh-hhcCchhhhhhh-h-hhhhhHHhhcchhh------eeHHHHHHHHHHHHh-hhhccccccccCc---
Confidence 33333 3311 122222222222 2 44678888887543 112223333445666 8888888877732
Q ss_pred ccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCcee
Q 046380 161 NTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLE 238 (434)
Q Consensus 161 ~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~ 238 (434)
.+......-.+|+.|+|+.| ..+ . +++-++.+|..|.+|+++.|...... ....+..-.++|+
T Consensus 225 ----~I~~~iAkN~~L~~lnlsm~-----sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~------Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 225 ----PIVNTIAKNSNLVRLNLSMC-----SGFTENALQLLLSSCSRLDELNLSWCFLFTEK------VTVAVAHISETLT 289 (419)
T ss_pred ----HHHHHHhccccceeeccccc-----cccchhHHHHHHHhhhhHhhcCchHhhccchh------hhHHHhhhchhhh
Confidence 01122345667888888876 444 3 77777888888888888888763221 1122333456677
Q ss_pred EEEEEeEEeC--chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce---e-ecCCcccEEE
Q 046380 239 TLVFSFMVLN--DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV---E-IHSPNLETFV 312 (434)
Q Consensus 239 ~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~---~-~~~p~L~~L~ 312 (434)
.|+++|+..+ +..+.-+...+|+|..|+++++. .+..- . ++.+.|++|.
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-------------------------~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-------------------------MLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc-------------------------ccCchHHHHHHhcchheeee
Confidence 7777665422 22223233555555555555442 22111 1 1355555555
Q ss_pred eccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccce
Q 046380 313 YKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLEN 361 (434)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~ 361 (434)
++.+|.-+......+...++|++|++.|+ +++..++-+.+.+|+|+-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 55544332333334556677888888887 667677777777777653
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.74 E-value=1.3e-19 Score=169.11 Aligned_cols=347 Identities=14% Similarity=0.141 Sum_probs=166.5
Q ss_pred CCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc------cccCCeeEEecccccCCcccchhhHHHHHHHHHhccCCCccc
Q 046380 9 FLPDDLTHHIMSLLPMKDIARTSILSKRWMSH------WLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQ 82 (434)
Q Consensus 9 ~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~ 82 (434)
.||+|++.+|||+|+.+.+.|++++|+-|+-+ |+.+.-.+|..+.- -..|.....+.+ ..++
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~-----------g~VV~~~~~Rcg-g~lk 141 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD-----------GGVVENMISRCG-GFLK 141 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC-----------CcceehHhhhhc-cccc
Confidence 59999999999999999999999999999864 33322111111000 012222333322 2345
Q ss_pred ceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccc
Q 046380 83 ELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKN 161 (434)
Q Consensus 83 ~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~ 161 (434)
++. ++.........+..... ..++++.|.+..|. ..++..+-...-.|.. |++|.|..|.. .-
T Consensus 142 ~LS---lrG~r~v~~sslrt~~~---~CpnIehL~l~gc~-----~iTd~s~~sla~~C~~-l~~l~L~~c~~iT~---- 205 (483)
T KOG4341|consen 142 ELS---LRGCRAVGDSSLRTFAS---NCPNIEHLALYGCK-----KITDSSLLSLARYCRK-LRHLNLHSCSSITD---- 205 (483)
T ss_pred ccc---ccccccCCcchhhHHhh---hCCchhhhhhhcce-----eccHHHHHHHHHhcch-hhhhhhcccchhHH----
Confidence 555 43222222222222222 22566666555544 1111111111122344 55555555532 10
Q ss_pred cccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEE
Q 046380 162 TVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLV 241 (434)
Q Consensus 162 ~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~ 241 (434)
+.|.....+||+|++|++++|.-.++ ++++.+..+|..++++.+.+|...+.+ .+..+.-.++-+..++
T Consensus 206 --~~Lk~la~gC~kL~~lNlSwc~qi~~---~gv~~~~rG~~~l~~~~~kGC~e~~le------~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 206 --VSLKYLAEGCRKLKYLNLSWCPQISG---NGVQALQRGCKELEKLSLKGCLELELE------ALLKAAAYCLEILKLN 274 (483)
T ss_pred --HHHHHHHHhhhhHHHhhhccCchhhc---CcchHHhccchhhhhhhhcccccccHH------HHHHHhccChHhhccc
Confidence 01111234556666666665421111 255555555655555555555443321 1222222333344444
Q ss_pred EEeEE-eCchhHHHHhccCCCCcEEEeecccc-ccCCCCcchhhccCccEEEeecCCCCcceee-----cCCcccEEEec
Q 046380 242 FSFMV-LNDRTFESALSKFSNLETLKLLSSVF-GKLPSSLSSAILKKLKLVRMENCRFDGPVEI-----HSPNLETFVYK 314 (434)
Q Consensus 242 l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~p~L~~L~l~ 314 (434)
+..+. ++|.....+-.++..|+.|+.+++.- .+.+.+-......+|+.|.+..|..+....+ +++.||.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 33332 34444433445566666666665532 2222211223455666666666655443322 46666666665
Q ss_pred cccCcccc-eeecCCCCCCccEEEEcCccCCcHHHHHHHHh---cCCccceEEeeccccccc-cccc--cccccceeEec
Q 046380 315 AGHGEIAS-FHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS---ACILLENLYLNSCAIPKG-HLEI--YSLTLKTLVVH 387 (434)
Q Consensus 315 ~~~~~~~~-~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~---~~p~Le~L~l~~~~~~~~-~~~~--~~~~L~~L~l~ 387 (434)
......++ +......|+.|++|.++.|+-++++++..+.. ....|+.+.+++|+.+.+ ..+. .+..||.+++.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 54322122 32334556666666666666666665444432 344566666666665331 1121 23456666666
Q ss_pred cCCccce
Q 046380 388 GCDHLHF 394 (434)
Q Consensus 388 ~c~~l~~ 394 (434)
+|..+..
T Consensus 435 ~~q~vtk 441 (483)
T KOG4341|consen 435 DCQDVTK 441 (483)
T ss_pred chhhhhh
Confidence 6665553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.29 E-value=5.4e-12 Score=139.26 Aligned_cols=251 Identities=16% Similarity=0.130 Sum_probs=126.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccc-cCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIF-SSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
++++.|+++.+. ....+|..++ .+.+ |++|+|++|.+ +. .....+++|++|+|++
T Consensus 93 ~~L~~L~Ls~n~-------~~~~ip~~~~~~l~~-L~~L~Ls~n~l~~~----------~p~~~l~~L~~L~Ls~----- 149 (968)
T PLN00113 93 PYIQTINLSNNQ-------LSGPIPDDIFTTSSS-LRYLNLSNNNFTGS----------IPRGSIPNLETLDLSN----- 149 (968)
T ss_pred CCCCEEECCCCc-------cCCcCChHHhccCCC-CCEEECcCCccccc----------cCccccCCCCEEECcC-----
Confidence 678888887654 2335677766 4444 88888888776 22 1234577777777777
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCc-c----cccc-----------cccceeeccCCceeEEEEEeEEeCchh
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHF-C----CRFL-----------EFKVANENSMSSLETLVFSFMVLNDRT 251 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~-~----~~~l-----------~~~~~~~~~~p~L~~L~l~~~~~~~~~ 251 (434)
+.+ ..+...+.++++|++|++++|...... . .+.+ .........+++|+.|+++++...+.
T Consensus 150 -n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~- 227 (968)
T PLN00113 150 -NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE- 227 (968)
T ss_pred -CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-
Confidence 444 244444566777777777777542110 0 0000 00111112334455554444332211
Q ss_pred HHHHhccCCCCcEEEeecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecC
Q 046380 252 FESALSKFSNLETLKLLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGG 327 (434)
Q Consensus 252 ~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~ 327 (434)
....+..+++|+.|++++|.+.. +|.. ...+++|++|.++++.....+ .+ .+++|++|+++.+... ..+....
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~ 304 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSS--LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELV 304 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChh--HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhH
Confidence 11123455555555555554432 2321 233455555555554321111 12 3566666666554321 0111223
Q ss_pred CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCCc
Q 046380 328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCDH 391 (434)
Q Consensus 328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~ 391 (434)
..+++|++|.+.++ .+... +...+..+|+|+.|++++|.+...... ....+|+.|++++|..
T Consensus 305 ~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 305 IQLQNLEILHLFSN-NFTGK-IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred cCCCCCcEEECCCC-ccCCc-CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 45667777777666 22222 223345677777777777776221111 1234677777777743
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.20 E-value=4.5e-11 Score=132.02 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=72.8
Q ss_pred ccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-cCCc
Q 046380 232 NSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPN 307 (434)
Q Consensus 232 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~ 307 (434)
..+++|++|+++++...+. ....+..+++|+.|++++|.+.. +|.. ...+++|++|++++|.....+ .+ .+++
T Consensus 233 ~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPS--IFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred hcCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCeeeccCchh--HhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 4567888888876654432 22245677888888888776653 4432 234667777777776422211 12 4677
Q ss_pred ccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 308 LETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 308 L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
|+.|++.++.... ........+++|++|.++++ .+... +...+..+++|+.|++++|.+
T Consensus 310 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 310 LEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSN-KFSGE-IPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CcEEECCCCccCC-cCChhHhcCCCCCEEECcCC-CCcCc-CChHHhCCCCCcEEECCCCee
Confidence 7777776654220 11122345566666666665 22211 222334556666666665554
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.17 E-value=1.5e-10 Score=128.96 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=52.8
Q ss_pred hccCccEEEeecCCCCcceee--cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccc
Q 046380 283 ILKKLKLVRMENCRFDGPVEI--HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLE 360 (434)
Q Consensus 283 ~~~~L~~L~l~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le 360 (434)
.+++|+.|++++|..+..+.. .+++|++|.++++..- ..+ .....+|+.|.++++ ++. .++.-+..+++|+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L-~~~---p~~~~nL~~L~Ls~n-~i~--~iP~si~~l~~L~ 872 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL-RTF---PDISTNISDLNLSRT-GIE--EVPWWIEKFSNLS 872 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc-ccc---cccccccCEeECCCC-CCc--cChHHHhcCCCCC
Confidence 344555555555554443322 3455555555543210 001 111245666666554 222 2333345677777
Q ss_pred eEEeeccccccccccc---cccccceeEeccCCccceee
Q 046380 361 NLYLNSCAIPKGHLEI---YSLTLKTLVVHGCDHLHFAE 396 (434)
Q Consensus 361 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~ 396 (434)
.|++++|+... .+.. ...+|+.+++++|..++.+.
T Consensus 873 ~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 873 FLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred EEECCCCCCcC-ccCcccccccCCCeeecCCCccccccc
Confidence 77777776522 2221 12466777777777776543
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=4.1e-13 Score=126.03 Aligned_cols=277 Identities=16% Similarity=0.145 Sum_probs=149.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
..+++|.+.++. ......+-.....|.+ +++|.+.+|.. +. ..+......|++|++|++..|
T Consensus 138 g~lk~LSlrG~r-----~v~~sslrt~~~~Cpn-IehL~l~gc~~iTd------~s~~sla~~C~~l~~l~L~~c----- 200 (483)
T KOG4341|consen 138 GFLKELSLRGCR-----AVGDSSLRTFASNCPN-IEHLALYGCKKITD------SSLLSLARYCRKLRHLNLHSC----- 200 (483)
T ss_pred cccccccccccc-----cCCcchhhHHhhhCCc-hhhhhhhcceeccH------HHHHHHHHhcchhhhhhhccc-----
Confidence 455555555555 2222333333334444 55555555543 11 001122335555666666554
Q ss_pred Eee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC-chhHHHHhccCCCCcEEE
Q 046380 190 FEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN-DRTFESALSKFSNLETLK 266 (434)
Q Consensus 190 ~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~ 266 (434)
..+ + .++.+..+||+|+.|+++.|...... .+......+..++.+..+||... ...+...-.+++-+.+++
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGN------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcC------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 333 3 45555555666666666555543221 12222223333444444443321 122222223444444555
Q ss_pred eeccc-cccCCCCcchhhccCccEEEeecCCCCcceee-----cCCcccEEEecccc-CcccceeecCCCCCCccEEEEc
Q 046380 267 LLSSV-FGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-----HSPNLETFVYKAGH-GEIASFHFGGRGFGNIKTLAVN 339 (434)
Q Consensus 267 l~~~~-~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~p~L~~L~l~~~~-~~~~~~~~~~~~~~~Lk~L~l~ 339 (434)
+..|. +++...+.....+..|+.|..++|.++....+ ++++|+.+.+.+++ .+..++......++.|+.+.+.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 44441 22222222233466777788888776654433 47888888877654 4444444455677888888888
Q ss_pred CccCCcHHHHHHHHhcCCccceEEeecccccccc-cc------ccccccceeEeccCCccceee----EecCceEEEEEe
Q 046380 340 GFLGLRNKSLEELISACILLENLYLNSCAIPKGH-LE------IYSLTLKTLVVHGCDHLHFAE----IQAPQLLYFQYV 408 (434)
Q Consensus 340 ~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~-~~------~~~~~L~~L~l~~c~~l~~~~----i~~~~l~~~~~~ 408 (434)
++.-..+..+..+..+||.|+.|.+++|..+++. +. .....++.+++++|+.+.+.. -.++++++.+.+
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 8844555568888888888888888888764422 11 223478888999999887433 346788887776
Q ss_pred ee
Q 046380 409 GQ 410 (434)
Q Consensus 409 ~~ 410 (434)
++
T Consensus 435 ~~ 436 (483)
T KOG4341|consen 435 DC 436 (483)
T ss_pred ch
Confidence 53
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.13 E-value=5.3e-10 Score=124.66 Aligned_cols=229 Identities=20% Similarity=0.162 Sum_probs=139.2
Q ss_pred ccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeecc
Q 046380 133 ALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAF 212 (434)
Q Consensus 133 ~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~ 212 (434)
.+|..+.....+|+.|++.++.+.. + |......+|++|+|.+ ..+..+..-+..+++|+.|++++
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~--------l-P~~f~~~~L~~L~L~~------s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRC--------M-PSNFRPENLVKLQMQG------SKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCC--------C-CCcCCccCCcEEECcC------ccccccccccccCCCCCEEECCC
Confidence 3444433333337777777766522 1 4445677888888887 33312222245688899999887
Q ss_pred ccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc-ccccCCCCcchhhccCccEEE
Q 046380 213 VYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS-VFGKLPSSLSSAILKKLKLVR 291 (434)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~L~~L~ 291 (434)
+.... .++. ...+++|+.|+++++.... .+...+..+++|+.|++++| .++.+|... .+++|++|+
T Consensus 644 ~~~l~--------~ip~-ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~ 710 (1153)
T PLN03210 644 SKNLK--------EIPD-LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN 710 (1153)
T ss_pred CCCcC--------cCCc-cccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence 75421 1121 2357889999998754221 12234577889999999987 566677532 577899999
Q ss_pred eecCCCCcceeecCCcccEEEeccccCcccceee------------------------------cCCCCCCccEEEEcCc
Q 046380 292 MENCRFDGPVEIHSPNLETFVYKAGHGEIASFHF------------------------------GGRGFGNIKTLAVNGF 341 (434)
Q Consensus 292 l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~------------------------------~~~~~~~Lk~L~l~~~ 341 (434)
+++|..+..+.-..++|+.|.+.++... .++. ....+++|++|.++++
T Consensus 711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~--~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 711 LSGCSRLKSFPDISTNISWLDLDETAIE--EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCCCccccccccCCcCeeecCCCccc--cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 9998766554444567777777665421 1100 0112346777777766
Q ss_pred cCCcHHHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCCccce
Q 046380 342 LGLRNKSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCDHLHF 394 (434)
Q Consensus 342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~ 394 (434)
.. ...++.-+.++++|+.|+|++|.... .++ ....+|+.|++++|..++.
T Consensus 789 ~~--l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 789 PS--LVELPSSIQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred CC--ccccChhhhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCcccc
Confidence 21 11233335688889999998886522 221 2346788888888877754
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.99 E-value=7.3e-11 Score=115.31 Aligned_cols=254 Identities=18% Similarity=0.129 Sum_probs=136.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+-++.++++-.. ...+|...|....++++|+|+++++... + .-.+.++.+|.+|.|+. .
T Consensus 149 ~alrslDLSrN~--------is~i~~~sfp~~~ni~~L~La~N~It~l------~-~~~F~~lnsL~tlkLsr------N 207 (873)
T KOG4194|consen 149 PALRSLDLSRNL--------ISEIPKPSFPAKVNIKKLNLASNRITTL------E-TGHFDSLNSLLTLKLSR------N 207 (873)
T ss_pred hhhhhhhhhhch--------hhcccCCCCCCCCCceEEeecccccccc------c-cccccccchheeeeccc------C
Confidence 456666666544 4555655565544488888888776210 0 02344566777777776 4
Q ss_pred ee-ChHHHHHhcCCCcceeeeccccCCCCcc-----cccc-----------cccceeeccCCceeEEEEEeEEeCchhHH
Q 046380 191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFC-----CRFL-----------EFKVANENSMSSLETLVFSFMVLNDRTFE 253 (434)
Q Consensus 191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~-----~~~l-----------~~~~~~~~~~p~L~~L~l~~~~~~~~~~~ 253 (434)
++ .-....+.+.|+|+.|+|.++....++. .+.+ +-.......+.++++|++.-.....- -.
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v-n~ 286 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV-NE 286 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh-hc
Confidence 44 2334556667777777777776543321 0000 00111222344444444432211100 00
Q ss_pred HHh------------------------ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC--CCCcceee-cCC
Q 046380 254 SAL------------------------SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC--RFDGPVEI-HSP 306 (434)
Q Consensus 254 ~~~------------------------~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c--~~l~~~~~-~~p 306 (434)
.++ +.+++|+.|++++|.++.++.+ ....+.+|+.|+++.. +.+..-.+ ...
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh-HHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 011 3467777777777777776542 2344556777776653 23333334 478
Q ss_pred cccEEEeccccCc--ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccc-cccccccce
Q 046380 307 NLETFVYKAGHGE--IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHL-EIYSLTLKT 383 (434)
Q Consensus 307 ~L~~L~l~~~~~~--~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~-~~~~~~L~~ 383 (434)
+|++|++..+..+ ++--...+.++++|++|.+.|+. +.- .-..-+..+++||.|+|.++.+-.-.. .+..-+||+
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~-I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~ 443 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKS-IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE 443 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eee-cchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence 8888888776522 11111234568899999998882 211 112223688999999999988732111 112236777
Q ss_pred eEeccC
Q 046380 384 LVVHGC 389 (434)
Q Consensus 384 L~l~~c 389 (434)
|.+...
T Consensus 444 Lv~nSs 449 (873)
T KOG4194|consen 444 LVMNSS 449 (873)
T ss_pred hhhccc
Confidence 766543
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=8.9e-10 Score=105.80 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=59.1
Q ss_pred CceeEEEEEeEEeCchh---HHHHhccCCCCcEEEeeccccccCCCCcch---hhccCccEEEeecCCCC----cce--e
Q 046380 235 SSLETLVFSFMVLNDRT---FESALSKFSNLETLKLLSSVFGKLPSSLSS---AILKKLKLVRMENCRFD----GPV--E 302 (434)
Q Consensus 235 p~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~---~~~~~L~~L~l~~c~~l----~~~--~ 302 (434)
++|+.|+++++..+... ....+..+++|+.|++++|.++.......+ ..+++|++|++++|..- ..+ .
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555555544443211 222334455566666665554421100001 11235666665554211 000 0
Q ss_pred e-cCCcccEEEeccccCcccceeec----CCCCCCccEEEEcCccCCcHHHH---HHHHhcCCccceEEeeccccc
Q 046380 303 I-HSPNLETFVYKAGHGEIASFHFG----GRGFGNIKTLAVNGFLGLRNKSL---EELISACILLENLYLNSCAIP 370 (434)
Q Consensus 303 ~-~~p~L~~L~l~~~~~~~~~~~~~----~~~~~~Lk~L~l~~~~~~~~~~l---~~l~~~~p~Le~L~l~~~~~~ 370 (434)
+ .+++|+.|+++++.....+.... ....++|++|.+.++ .+++.+. ......+++|+.+++++|.+.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1 35566666665544221111000 012356667776666 4443322 333334556677777666653
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.91 E-value=8.9e-10 Score=107.86 Aligned_cols=217 Identities=15% Similarity=0.125 Sum_probs=103.7
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR 222 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~ 222 (434)
|+.++|..+.+ .. |.......+|++|+|.+ ..+ .--..-++..|.||.|+|+.+.....
T Consensus 104 Lq~v~l~~N~Lt~I---------P~f~~~sghl~~L~L~~------N~I~sv~se~L~~l~alrslDLSrN~is~i---- 164 (873)
T KOG4194|consen 104 LQEVNLNKNELTRI---------PRFGHESGHLEKLDLRH------NLISSVTSEELSALPALRSLDLSRNLISEI---- 164 (873)
T ss_pred ceeeeeccchhhhc---------ccccccccceeEEeeec------cccccccHHHHHhHhhhhhhhhhhchhhcc----
Confidence 66666666666 33 23333444577777766 444 21122244466777777776665332
Q ss_pred cccccceeec-cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC--CCc
Q 046380 223 FLEFKVANEN-SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR--FDG 299 (434)
Q Consensus 223 ~l~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~--~l~ 299 (434)
+.-.. ..+++++|++++..+++-... .+.++.+|-.|.++.|.++.+|.. ....+++|+.|++.... -.+
T Consensus 165 -----~~~sfp~~~ni~~L~La~N~It~l~~~-~F~~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 165 -----PKPSFPAKVNIKKLNLASNRITTLETG-HFDSLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred -----cCCCCCCCCCceEEeeccccccccccc-cccccchheeeecccCcccccCHH-Hhhhcchhhhhhccccceeeeh
Confidence 11112 235677777766554432111 234555666667776666666642 12334555555554421 112
Q ss_pred ceee-cCCcccEEEeccccCc--ccc-ee--------------------ecCCCCCCccEEEEcCccCCcHHHHHHHHhc
Q 046380 300 PVEI-HSPNLETFVYKAGHGE--IAS-FH--------------------FGGRGFGNIKTLAVNGFLGLRNKSLEELISA 355 (434)
Q Consensus 300 ~~~~-~~p~L~~L~l~~~~~~--~~~-~~--------------------~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~ 355 (434)
...+ ..|+|++|.+..+... .++ ++ ..+-++++|+.|+++.+ .+..-.+... +.
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~W-sf 315 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSW-SF 315 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchh-hh
Confidence 2223 3555555555443311 011 11 01223445555555443 1111000011 35
Q ss_pred CCccceEEeecccccc---ccccccccccceeEeccCC
Q 046380 356 CILLENLYLNSCAIPK---GHLEIYSLTLKTLVVHGCD 390 (434)
Q Consensus 356 ~p~Le~L~l~~~~~~~---~~~~~~~~~L~~L~l~~c~ 390 (434)
|++|+.|+|+++.+.. +.+. .-.+|+.|.++++.
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNS 352 (873)
T ss_pred cccceeEeccccccccCChhHHH-HHHHhhhhcccccc
Confidence 7888888888887632 1111 12366777666653
No 11
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.88 E-value=1.5e-09 Score=72.42 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcc
Q 046380 7 ISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHW 41 (434)
Q Consensus 7 is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw 41 (434)
|+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999764
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=3.8e-09 Score=101.43 Aligned_cols=240 Identities=18% Similarity=0.125 Sum_probs=136.1
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF 223 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~ 223 (434)
|+.|.+.+|.+.. .+..+++......++|++|+++++........ ..+...+..+++|++|.+++|.......
T Consensus 25 L~~l~l~~~~l~~---~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--- 98 (319)
T cd00116 25 LQVLRLEGNTLGE---EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC--- 98 (319)
T ss_pred ccEEeecCCCCcH---HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH---
Confidence 6666666665511 01122223344666677777766211000000 1233445567788888888776632111
Q ss_pred ccccceeeccCCceeEEEEEeEEeCchhHH---HHhccC-CCCcEEEeeccccccCCCCc---chhhccCccEEEeecCC
Q 046380 224 LEFKVANENSMSSLETLVFSFMVLNDRTFE---SALSKF-SNLETLKLLSSVFGKLPSSL---SSAILKKLKLVRMENCR 296 (434)
Q Consensus 224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~p~~~---~~~~~~~L~~L~l~~c~ 296 (434)
......... ++|++|+++++...+.... ..+... ++|+.|++++|.+..-+... ....+++|++|++++|.
T Consensus 99 -~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 99 -GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred -HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 001111122 6688888887766643332 234555 89999999999776311100 12235689999988864
Q ss_pred CCc----cee--e-cCCcccEEEeccccCccc---ceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcC----CccceE
Q 046380 297 FDG----PVE--I-HSPNLETFVYKAGHGEIA---SFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISAC----ILLENL 362 (434)
Q Consensus 297 ~l~----~~~--~-~~p~L~~L~l~~~~~~~~---~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~----p~Le~L 362 (434)
--. .+. + ..++|+.|+++++..... .+......+++|++|+++++ .+++..+..+...+ +.|++|
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEE
Confidence 221 111 1 356899999887653311 12223456788999999888 67776666666554 789999
Q ss_pred Eeeccccccccc----cc--cccccceeEeccCCccc
Q 046380 363 YLNSCAIPKGHL----EI--YSLTLKTLVVHGCDHLH 393 (434)
Q Consensus 363 ~l~~~~~~~~~~----~~--~~~~L~~L~l~~c~~l~ 393 (434)
++++|.+..... .. ...+|+.++++++..-+
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 999988742111 11 12478888888875543
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.76 E-value=4.6e-10 Score=110.62 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=136.2
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
++.-.|.+++.. ...+|..+|....-|-.|+|++++++. +||-...+.+|++|.|++ .
T Consensus 126 Kn~iVLNLS~N~--------IetIPn~lfinLtDLLfLDLS~NrLe~--------LPPQ~RRL~~LqtL~Ls~------N 183 (1255)
T KOG0444|consen 126 KNSIVLNLSYNN--------IETIPNSLFINLTDLLFLDLSNNRLEM--------LPPQIRRLSMLQTLKLSN------N 183 (1255)
T ss_pred cCcEEEEcccCc--------cccCCchHHHhhHhHhhhccccchhhh--------cCHHHHHHhhhhhhhcCC------C
Confidence 455555555444 455555555443336666666666643 345556666666666665 2
Q ss_pred eeChHHH-HHhcCCC---cceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380 191 EMDAPRL-NYFQCSG---IRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK 266 (434)
Q Consensus 191 ~~~~l~~-~~~~cp~---L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 266 (434)
.. .. -+...|. |+.|.+++.... +..++...-.+.||..++++...... +..-+-.+++|++|+
T Consensus 184 PL---~hfQLrQLPsmtsL~vLhms~TqRT-------l~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 184 PL---NHFQLRQLPSMTSLSVLHMSNTQRT-------LDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLN 251 (1255)
T ss_pred hh---hHHHHhcCccchhhhhhhcccccch-------hhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheec
Confidence 22 11 1222333 333333332221 01112222233445555444322111 122344566667777
Q ss_pred eeccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccC
Q 046380 267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLG 343 (434)
Q Consensus 267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~ 343 (434)
+++|.++++... ...-.+|++|+++... +..+ .+ +.++|+.|....+...+++++.+...+.+|+.+...++
T Consensus 252 LS~N~iteL~~~--~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-- 326 (1255)
T KOG0444|consen 252 LSGNKITELNMT--EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-- 326 (1255)
T ss_pred cCcCceeeeecc--HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc--
Confidence 776666654421 2234466666666532 2111 11 57777777777777777777777778888888777666
Q ss_pred CcHHHHHHHHhcCCccceEEeecccccc--ccccccccccceeEeccCCccce
Q 046380 344 LRNKSLEELISACILLENLYLNSCAIPK--GHLEIYSLTLKTLVVHGCDHLHF 394 (434)
Q Consensus 344 ~~~~~l~~l~~~~p~Le~L~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~ 394 (434)
..+.+++-+..|+.|++|.|+.++..+ ..|. ..+.|+.|++.+.++|-.
T Consensus 327 -~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH-lL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 327 -KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH-LLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred -ccccCchhhhhhHHHHHhcccccceeechhhhh-hcCCcceeeccCCcCccC
Confidence 455667777899999999999998743 2222 346899999999999853
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.67 E-value=6.6e-10 Score=109.53 Aligned_cols=210 Identities=16% Similarity=0.106 Sum_probs=111.9
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL 224 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l 224 (434)
|+++.++.+.+.. +|+|+..+.+..|+.|+|++ .....+..-+...+++-.|+|+++.+....
T Consensus 80 LRsv~~R~N~LKn------sGiP~diF~l~dLt~lDLSh------NqL~EvP~~LE~AKn~iVLNLS~N~IetIP----- 142 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKN------SGIPTDIFRLKDLTILDLSH------NQLREVPTNLEYAKNSIVLNLSYNNIETIP----- 142 (1255)
T ss_pred hHHHhhhcccccc------CCCCchhcccccceeeecch------hhhhhcchhhhhhcCcEEEEcccCccccCC-----
Confidence 6666777666633 57777888888888888887 444233344555677778888877763221
Q ss_pred cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc-----CCCCcchhhccCccEEEeecCC---
Q 046380 225 EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK-----LPSSLSSAILKKLKLVRMENCR--- 296 (434)
Q Consensus 225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~p~~~~~~~~~~L~~L~l~~c~--- 296 (434)
..+.+++.-|-.|++++..... ....+..+.+|++|++++|.+.. +|. ++.|..|.+++-.
T Consensus 143 ---n~lfinLtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs------mtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 143 ---NSLFINLTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS------MTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ---chHHHhhHhHhhhccccchhhh--cCHHHHHHhhhhhhhcCCChhhHHHHhcCcc------chhhhhhhcccccchh
Confidence 1122334445555555443221 12234566677777777775432 443 5555666665531
Q ss_pred -CCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccc
Q 046380 297 -FDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHL 374 (434)
Q Consensus 297 -~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~ 374 (434)
++- ..+ ++.||..++++.+..+ .++...-.+.+|+.|+++++ .++.-.+ -.....+||+|+++.+.. ....
T Consensus 212 ~N~P-tsld~l~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrNQL-t~LP 284 (1255)
T KOG0444|consen 212 DNIP-TSLDDLHNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRNQL-TVLP 284 (1255)
T ss_pred hcCC-CchhhhhhhhhccccccCCC--cchHHHhhhhhhheeccCcC-ceeeeec--cHHHHhhhhhhccccchh-ccch
Confidence 111 122 4566666666665432 22223345567777777766 2222111 112345677777777765 2111
Q ss_pred cc--cccccceeEeccC
Q 046380 375 EI--YSLTLKTLVVHGC 389 (434)
Q Consensus 375 ~~--~~~~L~~L~l~~c 389 (434)
.. ..++|++|...+.
T Consensus 285 ~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNN 301 (1255)
T ss_pred HHHhhhHHHHHHHhccC
Confidence 11 1245666655444
No 15
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=8.5e-10 Score=99.75 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=113.5
Q ss_pred ccceEEEeeecccceEee--ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEE-eCchh
Q 046380 175 SVRRLVVRGCMALQGFEM--DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV-LNDRT 251 (434)
Q Consensus 175 ~L~~L~L~~c~~~~~~~~--~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~-~~~~~ 251 (434)
.|++|+|+. ..+ ..+..+++.|.+|+.|.+.+....+.- ....-.-.+|+.|+++.+. .+..+
T Consensus 186 Rlq~lDLS~------s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--------~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSN------SVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--------VNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhHHhhcch------hheeHHHHHHHHHHHHhhhhccccccccCcHH--------HHHHhccccceeeccccccccchhH
Confidence 377777776 545 266777777777777777777654321 1112234567777776554 33444
Q ss_pred HHHHhccCCCCcEEEeeccccccCCCCc-chhhccCccEEEeecCC-CC-----cceeecCCcccEEEeccccCccccee
Q 046380 252 FESALSKFSNLETLKLLSSVFGKLPSSL-SSAILKKLKLVRMENCR-FD-----GPVEIHSPNLETFVYKAGHGEIASFH 324 (434)
Q Consensus 252 ~~~~~~~~~~L~~L~l~~~~~~~~p~~~-~~~~~~~L~~L~l~~c~-~l-----~~~~~~~p~L~~L~l~~~~~~~~~~~ 324 (434)
..-+++.|..|+.|+++.|.+..-...+ .++.-++|+.|++++|. ++ +.+.-.||+|.+|+++.+.+--+.+.
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 4446688899999999888543211111 12334578888888874 22 22222588888888887654323333
Q ss_pred ecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 325 FGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 325 ~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
..+-.++-|++|.++.|+++..+.+..+- ..|+|..|++.+|--
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHHhcchheeeehhhhcCCChHHeeeec-cCcceEEEEeccccC
Confidence 44556778888888888777777666554 678888888887754
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.61 E-value=2.2e-07 Score=97.66 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=65.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
.+-..|+++... ...+|..+.. + |+.|.+.++.+.. +| ...++|++|++++ +
T Consensus 201 ~~~~~LdLs~~~--------LtsLP~~l~~--~-L~~L~L~~N~Lt~--------LP---~lp~~Lk~LdLs~------N 252 (788)
T PRK15387 201 NGNAVLNVGESG--------LTTLPDCLPA--H-ITTLVIPDNNLTS--------LP---ALPPELRTLEVSG------N 252 (788)
T ss_pred CCCcEEEcCCCC--------CCcCCcchhc--C-CCEEEccCCcCCC--------CC---CCCCCCcEEEecC------C
Confidence 455567666544 4567776543 4 8888888887732 12 2357899999987 4
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
.+..+. ...++|++|.+.+|..... + ...++|+.|.++++.... +....++|+.|++++|
T Consensus 253 ~LtsLP---~lp~sL~~L~Ls~N~L~~L---------p---~lp~~L~~L~Ls~N~Lt~-----LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 253 QLTSLP---VLPPGLLELSIFSNPLTHL---------P---ALPSGLCKLWIFGNQLTS-----LPVLPPGLQELSVSDN 312 (788)
T ss_pred ccCccc---CcccccceeeccCCchhhh---------h---hchhhcCEEECcCCcccc-----ccccccccceeECCCC
Confidence 331111 1246778888877755211 1 112345555555443221 1223355666666666
Q ss_pred ccccCC
Q 046380 271 VFGKLP 276 (434)
Q Consensus 271 ~~~~~p 276 (434)
.+..+|
T Consensus 313 ~L~~Lp 318 (788)
T PRK15387 313 QLASLP 318 (788)
T ss_pred ccccCC
Confidence 655554
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.1e-08 Score=94.20 Aligned_cols=204 Identities=17% Similarity=0.111 Sum_probs=133.8
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccCCCCccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYRPDHFCC 221 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~ 221 (434)
|+...|.++.... +|.......|++++.|+|+. .-+ + .+..++...|+||.|+++.+.......
T Consensus 123 L~~IsLdn~~V~~------~~~~~~~k~~~~v~~LdLS~------NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~- 189 (505)
T KOG3207|consen 123 LREISLDNYRVED------AGIEEYSKILPNVRDLDLSR------NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS- 189 (505)
T ss_pred hhheeecCccccc------cchhhhhhhCCcceeecchh------hhHHhHHHHHHHHHhcccchhcccccccccCCcc-
Confidence 7888888876633 11112456899999999998 555 4 778888999999999999887743211
Q ss_pred ccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce
Q 046380 222 RFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV 301 (434)
Q Consensus 222 ~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~ 301 (434)
.......++|+.|.++.|..+-..+......+|+|+.|.+.+|..... .......+..|+.|++++...+...
T Consensus 190 ------s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 190 ------SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred ------ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccc
Confidence 223447889999999999888777777788999999999998841111 1112345778888888886554433
Q ss_pred ee----cCCcccEEEeccccCc-ccce----eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 302 EI----HSPNLETFVYKAGHGE-IASF----HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 302 ~~----~~p~L~~L~l~~~~~~-~~~~----~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
.. ..|.|+.|.+..+... +... ..-...+++|+.|.+..+.-..+..+..+. ..++|+.|.+..+.+
T Consensus 263 ~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYL 338 (505)
T ss_pred cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhcccccc
Confidence 22 4777777777665422 1110 011245677888887766222344554443 567777777666554
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.51 E-value=3.2e-09 Score=109.16 Aligned_cols=228 Identities=19% Similarity=0.152 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccce
Q 046380 99 LITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRR 178 (434)
Q Consensus 99 ~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 178 (434)
.+..|+..+ .+++.+...... ...+|..++...+ |++|....|.+.- +|+....+++|++
T Consensus 255 ~lp~wi~~~---~nle~l~~n~N~--------l~~lp~ri~~~~~-L~~l~~~~nel~y--------ip~~le~~~sL~t 314 (1081)
T KOG0618|consen 255 NLPEWIGAC---ANLEALNANHNR--------LVALPLRISRITS-LVSLSAAYNELEY--------IPPFLEGLKSLRT 314 (1081)
T ss_pred cchHHHHhc---ccceEecccchh--------HHhhHHHHhhhhh-HHHHHhhhhhhhh--------CCCcccccceeee
Confidence 345677665 677777766544 4667777776666 7777777776622 3466677888888
Q ss_pred EEEeeecccceEee-ChHHHHHhcCCC-cceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHh
Q 046380 179 LVVRGCMALQGFEM-DAPRLNYFQCSG-IRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESAL 256 (434)
Q Consensus 179 L~L~~c~~~~~~~~-~~l~~~~~~cp~-L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~ 256 (434)
|+|.. ..+ +-....++..+. |+.|..+.+...... ..-....+.|+.|.+.+...++..+. .+
T Consensus 315 LdL~~------N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--------~~~e~~~~~Lq~LylanN~Ltd~c~p-~l 379 (1081)
T KOG0618|consen 315 LDLQS------NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--------SYEENNHAALQELYLANNHLTDSCFP-VL 379 (1081)
T ss_pred eeehh------ccccccchHHHhhhhHHHHHHhhhhccccccc--------cccchhhHHHHHHHHhcCcccccchh-hh
Confidence 88887 444 211122221111 333333333221110 11122345566666666666665544 55
Q ss_pred ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee---cCCcccEEEeccccCcccceeecCCCCCCc
Q 046380 257 SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI---HSPNLETFVYKAGHGEIASFHFGGRGFGNI 333 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L 333 (434)
.++++|+.|+++.|.++.+|.+ ...++..|++|.+++. .+..+.. .++.|++|....+.+. .++ .....+.|
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQL 454 (1081)
T ss_pred ccccceeeeeecccccccCCHH-HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcc
Confidence 6777777777777777776642 1223445555556553 2222221 4666666665555432 222 34455666
Q ss_pred cEEEEcCccCCcHHHHHHHHhcCCccceEEeeccc
Q 046380 334 KTLAVNGFLGLRNKSLEELISACILLENLYLNSCA 368 (434)
Q Consensus 334 k~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 368 (434)
+.++++.+ .++.-.+.+-.. .|+|+.|+++++.
T Consensus 455 ~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred eEEecccc-hhhhhhhhhhCC-CcccceeeccCCc
Confidence 66666555 333333332221 2566666666665
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.48 E-value=1.9e-07 Score=98.47 Aligned_cols=221 Identities=13% Similarity=0.119 Sum_probs=111.6
Q ss_pred cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccce
Q 046380 110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
..+..+|++.... ...+|..+. .. |+.|+|++|.+.. +|.. .+++|++|++++
T Consensus 177 ~~~~~~L~L~~~~--------LtsLP~~Ip--~~-L~~L~Ls~N~Lts--------LP~~--l~~nL~~L~Ls~------ 229 (754)
T PRK15370 177 KNNKTELRLKILG--------LTTIPACIP--EQ-ITTLILDNNELKS--------LPEN--LQGNIKTLYANS------ 229 (754)
T ss_pred ccCceEEEeCCCC--------cCcCCcccc--cC-CcEEEecCCCCCc--------CChh--hccCCCEEECCC------
Confidence 3456777776543 445565443 23 8888998887732 2222 235888888887
Q ss_pred EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhc-cCCCCcEEEee
Q 046380 190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALS-KFSNLETLKLL 268 (434)
Q Consensus 190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~ 268 (434)
+.+..+...+ .++|+.|.+++|....... ....+|+.|+++++.... +.. -.++|+.|+++
T Consensus 230 N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~-----------~l~s~L~~L~Ls~N~L~~-----LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 230 NQLTSIPATL--PDTIQEMELSINRITELPE-----------RLPSALQSLDLFHNKISC-----LPENLPEELRYLSVY 291 (754)
T ss_pred CccccCChhh--hccccEEECcCCccCcCCh-----------hHhCCCCEEECcCCccCc-----cccccCCCCcEEECC
Confidence 4331122111 2478888888876632210 012357777776544332 111 12467777777
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS 348 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~ 348 (434)
+|.++.+|..+ ..+|+.|+++++..........++|+.|.+..+..+ ++... -.++|+.|.++++ .+..
T Consensus 292 ~N~Lt~LP~~l----p~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt--~LP~~--l~~sL~~L~Ls~N-~L~~-- 360 (754)
T PRK15370 292 DNSIRTLPAHL----PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT--SLPAS--LPPELQVLDVSKN-QITV-- 360 (754)
T ss_pred CCccccCcccc----hhhHHHHHhcCCccccCCccccccceeccccCCccc--cCChh--hcCcccEEECCCC-CCCc--
Confidence 77777666421 235666666654322111112356666666554422 11111 1246666666665 2321
Q ss_pred HHHHHhcCCccceEEeeccccccccccccccccceeEeccC
Q 046380 349 LEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGC 389 (434)
Q Consensus 349 l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c 389 (434)
++.- -.++|+.|+|++|.+. .........|+.|++++|
T Consensus 361 LP~~--lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N 398 (754)
T PRK15370 361 LPET--LPPTITTLDVSRNALT-NLPENLPAALQIMQASRN 398 (754)
T ss_pred CChh--hcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccC
Confidence 1110 1246666666666652 111112234555555554
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.46 E-value=6.2e-07 Score=94.31 Aligned_cols=218 Identities=17% Similarity=0.092 Sum_probs=111.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
++++.|.+..+. ...+|.. ..+ |++|++++|.+.. +| ...++|++|++.+ +
T Consensus 222 ~~L~~L~L~~N~--------Lt~LP~l---p~~-Lk~LdLs~N~Lts--------LP---~lp~sL~~L~Ls~------N 272 (788)
T PRK15387 222 AHITTLVIPDNN--------LTSLPAL---PPE-LRTLEVSGNQLTS--------LP---VLPPGLLELSIFS------N 272 (788)
T ss_pred cCCCEEEccCCc--------CCCCCCC---CCC-CcEEEecCCccCc--------cc---CcccccceeeccC------C
Confidence 477888877654 4455542 234 9999999988732 12 2346788888877 3
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCch---------------hHHHH
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR---------------TFESA 255 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~---------------~~~~~ 255 (434)
.+ ..+-...++|+.|.+.+|..... + ...|+|+.|+++++..... .+..+
T Consensus 273 ~L---~~Lp~lp~~L~~L~Ls~N~Lt~L---------P---~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 273 PL---THLPALPSGLCKLWIFGNQLTSL---------P---VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL 337 (788)
T ss_pred ch---hhhhhchhhcCEEECcCCccccc---------c---ccccccceeECCCCccccCCCCcccccccccccCccccc
Confidence 22 11111224555666655544211 1 1124455554443322210 00001
Q ss_pred hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380 256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT 335 (434)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~ 335 (434)
....++|+.|++++|.+..+|.. ..+|+.|.+++.. +..+.-..++|+.|+++++... ++. ...++|+.
T Consensus 338 P~lp~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt--~LP---~l~s~L~~ 406 (788)
T PRK15387 338 PTLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLT--SLP---VLPSELKE 406 (788)
T ss_pred cccccccceEecCCCccCCCCCC-----Ccccceehhhccc-cccCcccccccceEEecCCccc--CCC---CcccCCCE
Confidence 11123667777777766666541 3456666655432 2222223456777777765533 221 12356777
Q ss_pred EEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc---ccccccceeEeccCCc
Q 046380 336 LAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDH 391 (434)
Q Consensus 336 L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~ 391 (434)
|+++++ .++ .++. ...+|+.|++++|.+. .++ ....+|+.|++++++.
T Consensus 407 LdLS~N-~Ls--sIP~---l~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 407 LMVSGN-RLT--SLPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEccCC-cCC--CCCc---chhhhhhhhhccCccc--ccChHHhhccCCCeEECCCCCC
Confidence 777776 332 1222 1235777777777762 121 1234677788887753
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.41 E-value=7.5e-08 Score=64.53 Aligned_cols=37 Identities=43% Similarity=0.618 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcccc
Q 046380 7 ISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLC 43 (434)
Q Consensus 7 is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~~ 43 (434)
+++||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987643
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=4.4e-08 Score=90.72 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=57.2
Q ss_pred cCCcccEEEeccccCccc-c--eeecCCCCCCccEEEEcCccCCcHHHH----HHHHhcCCccceEEeeccccccccccc
Q 046380 304 HSPNLETFVYKAGHGEIA-S--FHFGGRGFGNIKTLAVNGFLGLRNKSL----EELISACILLENLYLNSCAIPKGHLEI 376 (434)
Q Consensus 304 ~~p~L~~L~l~~~~~~~~-~--~~~~~~~~~~Lk~L~l~~~~~~~~~~l----~~l~~~~p~Le~L~l~~~~~~~~~~~~ 376 (434)
.||+|+.|++..+-.+.. + +-...+.+++|+.|+++.| .+.+++. ..+-+..|+|+.|.+.+|.+..+....
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 488888888877654322 1 2234566778889988888 5555533 444457889999999998874322211
Q ss_pred ------cccccceeEeccCCc
Q 046380 377 ------YSLTLKTLVVHGCDH 391 (434)
Q Consensus 377 ------~~~~L~~L~l~~c~~ 391 (434)
--+.|++|++++|..
T Consensus 290 la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcchhhHHhcCCcccc
Confidence 135788888888865
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.3e-08 Score=92.63 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=29.5
Q ss_pred cccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccC
Q 046380 168 LSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 168 ~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
....++.+|+...|.+ ..+ + ..+.....||++++|+|+.+-.
T Consensus 115 akQsn~kkL~~IsLdn------~~V~~~~~~~~~k~~~~v~~LdLS~NL~ 158 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDN------YRVEDAGIEEYSKILPNVRDLDLSRNLF 158 (505)
T ss_pred HHhhhHHhhhheeecC------ccccccchhhhhhhCCcceeecchhhhH
Confidence 3445788888888887 444 3 3335677788888888887765
No 24
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.32 E-value=5.8e-07 Score=57.86 Aligned_cols=33 Identities=42% Similarity=0.671 Sum_probs=31.0
Q ss_pred CCHHHHHHHHcCCChHHHHHHhhhhhhhhhccc
Q 046380 10 LPDDLTHHIMSLLPMKDIARTSILSKRWMSHWL 42 (434)
Q Consensus 10 LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~ 42 (434)
||+|++.+||++|+.+|+.+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998654
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.25 E-value=3.2e-07 Score=85.14 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=52.2
Q ss_pred CCcccEEEeccccCcccce---eecCCCCCCccEEEEcCccCCcHH---HHHHHHhcCCccceEEeecccccc-------
Q 046380 305 SPNLETFVYKAGHGEIASF---HFGGRGFGNIKTLAVNGFLGLRNK---SLEELISACILLENLYLNSCAIPK------- 371 (434)
Q Consensus 305 ~p~L~~L~l~~~~~~~~~~---~~~~~~~~~Lk~L~l~~~~~~~~~---~l~~l~~~~p~Le~L~l~~~~~~~------- 371 (434)
.|.|+++.+..+.....+. ...+.+|++|+.|+|..+ -++.+ .+..-+..+|+|+.|++++|.+-.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 5777777766654332222 224567778888887766 34444 344445567777788888776633
Q ss_pred ccccccccccceeEeccCCccc
Q 046380 372 GHLEIYSLTLKTLVVHGCDHLH 393 (434)
Q Consensus 372 ~~~~~~~~~L~~L~l~~c~~l~ 393 (434)
..+....+.|+.|.+.+|..-.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHhccCCCCceeccCcchhHH
Confidence 2222234577777777776544
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.18 E-value=2.7e-07 Score=93.73 Aligned_cols=210 Identities=17% Similarity=0.130 Sum_probs=102.6
Q ss_pred cCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccc-cCCCCcccccccccceeeccCCceeEEEEEeEE-e
Q 046380 172 FNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFV-YRPDHFCCRFLEFKVANENSMSSLETLVFSFMV-L 247 (434)
Q Consensus 172 ~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~-~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~-~ 247 (434)
.+++|+.|.+..| ..+ + .+..+...||+|++|.+.+| ....... .........+++|+.++++.+. .
T Consensus 186 ~~~~L~~l~l~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGC-----SKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred hCchhhHhhhccc-----ccCChhhHHHHHhhCchhheecccCcccccccch----hHhhhhhhhcCCcCccchhhhhcc
Confidence 3556666666553 222 2 34555555666666666553 1111000 0011122334555555555544 4
Q ss_pred CchhHHHHhccCCCCcEEEeeccc-cccCCCCcchhhccCccEEEeecCCCCcce-----eecCCcccEEEeccc-----
Q 046380 248 NDRTFESALSKFSNLETLKLLSSV-FGKLPSSLSSAILKKLKLVRMENCRFDGPV-----EIHSPNLETFVYKAG----- 316 (434)
Q Consensus 248 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~~p~L~~L~l~~~----- 316 (434)
++..+..+...+++|+.|.+..|. ++..........+++|++|+++.|..+... ...||+++.|.+...
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~ 336 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS 336 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence 444444444455666666555443 333222222334555666666655443221 113555555443221
Q ss_pred ---------cC-c-ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeE
Q 046380 317 ---------HG-E-IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLV 385 (434)
Q Consensus 317 ---------~~-~-~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~ 385 (434)
.. . ..........+++|+.+.+..+. .++..+..++.+||.|. ..+..+.. ....++.|.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~-------~~~~l~~L~ 407 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC-------RSDSLRVLN 407 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc-------cCCccceEe
Confidence 10 0 01112234567777888777773 66666667777777773 33222221 112288999
Q ss_pred eccCCccceeeEec
Q 046380 386 VHGCDHLHFAEIQA 399 (434)
Q Consensus 386 l~~c~~l~~~~i~~ 399 (434)
++.|...+...+..
T Consensus 408 l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRC 421 (482)
T ss_pred cccCccccccchHH
Confidence 99998887554443
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.16 E-value=1.2e-06 Score=92.42 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=111.9
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
++++.|+++.+. ...+|..++. + |++|++++|.+.. +|.. -.++|+.|+|++ +
T Consensus 199 ~~L~~L~Ls~N~--------LtsLP~~l~~--n-L~~L~Ls~N~Lts--------LP~~--l~~~L~~L~Ls~------N 251 (754)
T PRK15370 199 EQITTLILDNNE--------LKSLPENLQG--N-IKTLYANSNQLTS--------IPAT--LPDTIQEMELSI------N 251 (754)
T ss_pred cCCcEEEecCCC--------CCcCChhhcc--C-CCEEECCCCcccc--------CChh--hhccccEEECcC------C
Confidence 578888887665 5567776653 4 9999999988732 1221 235799999988 4
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
.+..+...+ ..+|+.|++++|..... +. ...++|+.|+++++....... .-.++|+.|++++|
T Consensus 252 ~L~~LP~~l--~s~L~~L~Ls~N~L~~L---------P~--~l~~sL~~L~Ls~N~Lt~LP~----~lp~sL~~L~Ls~N 314 (754)
T PRK15370 252 RITELPERL--PSALQSLDLFHNKISCL---------PE--NLPEELRYLSVYDNSIRTLPA----HLPSGITHLNVQSN 314 (754)
T ss_pred ccCcCChhH--hCCCCEEECcCCccCcc---------cc--ccCCCCcEEECCCCccccCcc----cchhhHHHHHhcCC
Confidence 441121111 24789999987765321 11 112578888887664432110 01135777777777
Q ss_pred ccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHH
Q 046380 271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSL 349 (434)
Q Consensus 271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l 349 (434)
.+..+|..+ .++|+.|.+++|.. ..+.- -+++|+.|+++.+... .+.... .++|++|+++++ .+..- .
T Consensus 315 ~Lt~LP~~l----~~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N-~Lt~L-P 383 (754)
T PRK15370 315 SLTALPETL----PPGLKTLEAGENAL-TSLPASLPPELQVLDVSKNQIT--VLPETL--PPTITTLDVSRN-ALTNL-P 383 (754)
T ss_pred ccccCCccc----cccceeccccCCcc-ccCChhhcCcccEEECCCCCCC--cCChhh--cCCcCEEECCCC-cCCCC-C
Confidence 777666422 35677777776532 21211 2467777777765532 111111 246777777766 33210 0
Q ss_pred HHHHhcCCccceEEeecccc
Q 046380 350 EELISACILLENLYLNSCAI 369 (434)
Q Consensus 350 ~~l~~~~p~Le~L~l~~~~~ 369 (434)
..+. +.|+.|++++|.+
T Consensus 384 ~~l~---~sL~~LdLs~N~L 400 (754)
T PRK15370 384 ENLP---AALQIMQASRNNL 400 (754)
T ss_pred HhHH---HHHHHHhhccCCc
Confidence 1111 2466666666655
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.14 E-value=1.1e-07 Score=96.68 Aligned_cols=206 Identities=19% Similarity=0.180 Sum_probs=100.8
Q ss_pred ccccCcccceEEEeeecccceEee-C---hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEe
Q 046380 169 SNFFNPSVRRLVVRGCMALQGFEM-D---APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSF 244 (434)
Q Consensus 169 ~~~~~~~L~~L~L~~c~~~~~~~~-~---~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~ 244 (434)
....+++|+.|++++|. ..+ . ....+...|++|++|++.+|...... .+..+...+|+|+.|.+.+
T Consensus 209 ~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~------~l~~l~~~c~~L~~L~l~~ 278 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCC----LLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI------GLSALASRCPNLETLSLSN 278 (482)
T ss_pred HHhhCchhheecccCcc----cccccchhHhhhhhhhcCCcCccchhhhhccCch------hHHHHHhhCCCcceEccCC
Confidence 34455666666655420 111 1 22234455566666666555532211 1222222355566655554
Q ss_pred EE-eCchhHHHHhccCCCCcEEEeeccccc-cCCCCcchhhccCccEEEeec---CCCCccee----------------e
Q 046380 245 MV-LNDRTFESALSKFSNLETLKLLSSVFG-KLPSSLSSAILKKLKLVRMEN---CRFDGPVE----------------I 303 (434)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~---c~~l~~~~----------------~ 303 (434)
+. .++..+..+...+++|+.|++++|... +.........+++|+.|.+.. |+.++... .
T Consensus 279 c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~ 358 (482)
T KOG1947|consen 279 CSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELIL 358 (482)
T ss_pred CCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHH
Confidence 44 455555555555666666666655321 100000012244444433222 22222221 1
Q ss_pred -cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc-cccccc---c
Q 046380 304 -HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK-GHLEIY---S 378 (434)
Q Consensus 304 -~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~-~~~~~~---~ 378 (434)
.+++++.+.+........+. .+.+.+|..++ +.+......++.++.|+++.|.... ..+... .
T Consensus 359 ~~~~~l~~~~l~~~~~~~~~~-----------~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~ 426 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCGISDLGL-----------ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSC 426 (482)
T ss_pred hcCCCcchhhhhhhhccCcch-----------HHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhh
Confidence 36666666655432111111 35556665555 6666666666779999999998633 222222 5
Q ss_pred cccceeEeccCCccceee
Q 046380 379 LTLKTLVVHGCDHLHFAE 396 (434)
Q Consensus 379 ~~L~~L~l~~c~~l~~~~ 396 (434)
..++.+++.+|+......
T Consensus 427 ~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 427 SNLKDLDLSGCRVITLKS 444 (482)
T ss_pred hccccCCccCcccccchh
Confidence 567888999998887443
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.10 E-value=2e-07 Score=96.20 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=51.6
Q ss_pred CcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH
Q 046380 173 NPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF 252 (434)
Q Consensus 173 ~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~ 252 (434)
-.+|+++++++ ..+..+..++..|++|+.+....+..... ........+|++|....+.+. -.
T Consensus 240 p~nl~~~dis~------n~l~~lp~wi~~~~nle~l~~n~N~l~~l---------p~ri~~~~~L~~l~~~~nel~--yi 302 (1081)
T KOG0618|consen 240 PLNLQYLDISH------NNLSNLPEWIGACANLEALNANHNRLVAL---------PLRISRITSLVSLSAAYNELE--YI 302 (1081)
T ss_pred cccceeeecch------hhhhcchHHHHhcccceEecccchhHHhh---------HHHHhhhhhHHHHHhhhhhhh--hC
Confidence 34688888887 55534558888899999999988876321 111222334444433221111 01
Q ss_pred HHHhccCCCCcEEEeeccccccCCC
Q 046380 253 ESALSKFSNLETLKLLSSVFGKLPS 277 (434)
Q Consensus 253 ~~~~~~~~~L~~L~l~~~~~~~~p~ 277 (434)
.........|++|++..+.+..+|.
T Consensus 303 p~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred CCcccccceeeeeeehhccccccch
Confidence 1133556777777777777776665
No 30
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.06 E-value=1.3e-07 Score=89.04 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 327 GRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 327 ~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
...+.+|++|++.++ +.+.++.+++++.+|++|.+.++++
T Consensus 501 l~nm~nL~tLDL~nN---dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNN---DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhhcceeccCCC---chhhCChhhccccceeEEEecCCcc
Confidence 455677777777776 5667777778888888888888776
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.04 E-value=2.8e-06 Score=73.43 Aligned_cols=62 Identities=15% Similarity=0.004 Sum_probs=27.7
Q ss_pred CCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH--HHHHHHhcCCccceEEeecc
Q 046380 305 SPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK--SLEELISACILLENLYLNSC 367 (434)
Q Consensus 305 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~--~l~~l~~~~p~Le~L~l~~~ 367 (434)
+|+|++|.++++....-........+++|+.|.+.++ .++.. .-..++..+|+|+.||-...
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence 5666666666554321111123456777888888777 33332 45667778899999885443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.03 E-value=5.9e-06 Score=71.39 Aligned_cols=56 Identities=9% Similarity=-0.066 Sum_probs=17.1
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChH-HHHHhcCCCcceeeeccccCC
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAP-RLNYFQCSGIRDFDEAFVYRP 216 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l-~~~~~~cp~L~~L~l~~~~~~ 216 (434)
|+.|+|++|.+ .. +....+++|++|++++ ..+..+ ..+...||+|++|.+.++...
T Consensus 44 L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~------N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 44 LEVLDLSNNQITKL----------EGLPGLPRLKTLDLSN------NRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp --EEE-TTS--S------------TT----TT--EEE--S------S---S-CHHHHHH-TT--EEE-TTS---
T ss_pred CCEEECCCCCCccc----------cCccChhhhhhcccCC------CCCCccccchHHhCCcCCEEECcCCcCC
Confidence 66666666666 33 4445566666666666 444112 222345666666666666653
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=6.5e-06 Score=86.23 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=91.0
Q ss_pred ceeEEEEeeeee--cccccccccccccccccCcccceEEEeeecccceEee--ChHHHHHhcCCCcceeeeccccCCCCc
Q 046380 144 FLVSLTIRHCKI--GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM--DAPRLNYFQCSGIRDFDEAFVYRPDHF 219 (434)
Q Consensus 144 ~L~~L~L~~~~~--~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~--~~l~~~~~~cp~L~~L~l~~~~~~~~~ 219 (434)
+|++|+++|... ..|+. ....-||+|++|.+++ ..+ +++..+..++|+|..|+++++...+..
T Consensus 123 nL~~LdI~G~~~~s~~W~~-------kig~~LPsL~sL~i~~------~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~ 189 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPK-------KIGTMLPSLRSLVISG------RQFDNDDFSQLCASFPNLRSLDISGTNISNLS 189 (699)
T ss_pred hhhhcCccccchhhccHHH-------HHhhhCcccceEEecC------ceecchhHHHHhhccCccceeecCCCCccCcH
Confidence 488888888643 33321 3455899999999998 888 388999999999999999988774321
Q ss_pred ccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCc
Q 046380 220 CCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG 299 (434)
Q Consensus 220 ~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~ 299 (434)
.++.++|||.|.+.+-.+...+...-.-.+++|+.|+++.-.+..
T Consensus 190 -----------------------------------GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 190 -----------------------------------GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred -----------------------------------HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 245555566555543333221110001123344444444321111
Q ss_pred ceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeec
Q 046380 300 PVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNS 366 (434)
Q Consensus 300 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~ 366 (434)
...+ ......-...+++||.|+.+|. ..+.+.+..++..=|+|+.+.+-.
T Consensus 235 ~~~i----------------i~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 235 DTKI----------------IEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred chHH----------------HHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhhhhhhh
Confidence 1000 0000011233667777777777 666777777777667777766543
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=5.2e-05 Score=69.28 Aligned_cols=227 Identities=14% Similarity=0.054 Sum_probs=138.7
Q ss_pred eeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccCCCCcc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYRPDHFC 220 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~ 220 (434)
++-|.+.+|.++. .|-. .....+..++.|+|.+ +.+ | .+..++.+.|.|+.|+++.+.....
T Consensus 47 ~ellvln~~~id~------~gd~~~~~~~~~~v~elDL~~------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-- 112 (418)
T KOG2982|consen 47 LELLVLNGSIIDN------EGDVMLFGSSVTDVKELDLTG------NLISDWSEIGAILEQLPALTTLNLSCNSLSSD-- 112 (418)
T ss_pred hhhheecCCCCCc------chhHHHHHHHhhhhhhhhccc------chhccHHHHHHHHhcCccceEeeccCCcCCCc--
Confidence 6677788887733 0100 1234678899999999 888 6 7888999999999999998877432
Q ss_pred cccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCc--chhhccCccEEEeecCCCC
Q 046380 221 CRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSL--SSAILKKLKLVRMENCRFD 298 (434)
Q Consensus 221 ~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~--~~~~~~~L~~L~l~~c~~l 298 (434)
+...-....+|+.|-++|....-......+..+|.++.|+++.|.+..+-..- ....-+.+++|....|...
T Consensus 113 ------I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 113 ------IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred ------cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence 12222345589999888877665555667788999999999887432210000 0001224566666666543
Q ss_pred cceee-----cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccc
Q 046380 299 GPVEI-----HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGH 373 (434)
Q Consensus 299 ~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~ 373 (434)
..... -.|+++.+.+..+.....+-......++.+--|.++...--++.++..+- .+|.|..|.+.+++++...
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCcccccc
Confidence 33322 37888888876654322222223445555556677655223455666654 8999999999988874311
Q ss_pred -----ccccccccceeEeccCCcc
Q 046380 374 -----LEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 374 -----~~~~~~~L~~L~l~~c~~l 392 (434)
....-.+|.++.+-|..++
T Consensus 266 ~~~err~llIaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLNGSKI 289 (418)
T ss_pred cCCcceEEEEeeccceEEecCccc
Confidence 1112235555555555444
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.57 E-value=9.7e-07 Score=74.05 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=91.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
.+++.|.++... ....|+.+..-.+ |+.|++.++.++. +|+...+++.|++|+++- .
T Consensus 33 s~ITrLtLSHNK--------l~~vppnia~l~n-levln~~nnqie~--------lp~~issl~klr~lnvgm------n 89 (264)
T KOG0617|consen 33 SNITRLTLSHNK--------LTVVPPNIAELKN-LEVLNLSNNQIEE--------LPTSISSLPKLRILNVGM------N 89 (264)
T ss_pred hhhhhhhcccCc--------eeecCCcHHHhhh-hhhhhcccchhhh--------cChhhhhchhhhheecch------h
Confidence 466777777655 6677888777777 9999999888833 357788899999998875 3
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
+...+.+=+.++|.||.|++.++...+. ..+.-.+.+..|+-|.+++..... ...-+..+++|+.|.+..+
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~-------~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNEN-------SLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccc-------cCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccC
Confidence 3224444567789999999988766321 112222333444444443321110 1112356677777777766
Q ss_pred ccccCCCCcchhhccCccEEEeec
Q 046380 271 VFGKLPSSLSSAILKKLKLVRMEN 294 (434)
Q Consensus 271 ~~~~~p~~~~~~~~~~L~~L~l~~ 294 (434)
.+-.+|- -.+.+.+|+.|.|.+
T Consensus 161 dll~lpk--eig~lt~lrelhiqg 182 (264)
T KOG0617|consen 161 DLLSLPK--EIGDLTRLRELHIQG 182 (264)
T ss_pred chhhCcH--HHHHHHHHHHHhccc
Confidence 6655553 133455666666655
No 36
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.54 E-value=3.2e-07 Score=86.54 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=9.3
Q ss_pred ccCCCCcEEEeeccccccCC
Q 046380 257 SKFSNLETLKLLSSVFGKLP 276 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~p 276 (434)
+++..|+.|++..+.+..+|
T Consensus 203 g~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred cchhhhHHHHhhhcccccCC
Confidence 44444444444444444444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.52 E-value=1.9e-05 Score=72.15 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=45.2
Q ss_pred cccccccccCCCceeEEEEeeeeecccccccccc-cccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380 132 YALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMG-LTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE 210 (434)
Q Consensus 132 ~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l 210 (434)
+.+...+--|.. |++|..++..-..-..|-.-. ++....-|++|+.+.++.|.. ..+..+...-|.|+.+.+
T Consensus 172 ~d~~hildf~~~-l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~------~~i~~~~~~kptl~t~~v 244 (490)
T KOG1259|consen 172 YDFSHVLDFCTQ-LVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST------ENIVDIELLKPTLQTICV 244 (490)
T ss_pred cchHHHHHhhhh-eeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch------hheeceeecCchhheeee
Confidence 333333333556 999998875321100000000 122344688899999988531 144555666789999998
Q ss_pred ccccCCCC
Q 046380 211 AFVYRPDH 218 (434)
Q Consensus 211 ~~~~~~~~ 218 (434)
.+....+.
T Consensus 245 ~~s~~~~~ 252 (490)
T KOG1259|consen 245 HNTTIQDV 252 (490)
T ss_pred eccccccc
Confidence 88776544
No 38
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.51 E-value=1.5e-06 Score=72.97 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=90.1
Q ss_pred ccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCC
Q 046380 137 VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRP 216 (434)
Q Consensus 137 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~ 216 (434)
.+|.... ...|.|+.+++.. .||....+.+|+.|++.+ ..+..+..-+++.|.|+.|++.-+...
T Consensus 28 gLf~~s~-ITrLtLSHNKl~~--------vppnia~l~nlevln~~n------nqie~lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 28 GLFNMSN-ITRLTLSHNKLTV--------VPPNIAELKNLEVLNLSN------NQIEELPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred cccchhh-hhhhhcccCceee--------cCCcHHHhhhhhhhhccc------chhhhcChhhhhchhhhheecchhhhh
Confidence 3455555 8889999998833 357888999999999987 555455556778899999988766542
Q ss_pred CCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380 217 DHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR 296 (434)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~ 296 (434)
..+......|-|+.|++.....+.......+-.+..|+-|.++++-++.+|.. .+++++|+.|.+...+
T Consensus 93 ---------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d--vg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 93 ---------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD--VGKLTNLQILSLRDND 161 (264)
T ss_pred ---------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh--hhhhcceeEEeeccCc
Confidence 22333345566666666554444433332333445555566666666666542 2344455555444433
Q ss_pred CCcce-ee-cCCcccEEEecccc
Q 046380 297 FDGPV-EI-HSPNLETFVYKAGH 317 (434)
Q Consensus 297 ~l~~~-~~-~~p~L~~L~l~~~~ 317 (434)
-++.. ++ ....|++|.+.++.
T Consensus 162 ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 162 LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhCcHHHHHHHHHHHHhcccce
Confidence 22221 12 34455555555543
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=6.8e-05 Score=78.68 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcch
Q 046380 202 CSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS 281 (434)
Q Consensus 202 cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~ 281 (434)
-.+|++|++++...... ........-+|+|++|.+.+.......+.++..++|||..||++++.+..+-. .
T Consensus 121 r~nL~~LdI~G~~~~s~------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---I 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---I 191 (699)
T ss_pred HHhhhhcCccccchhhc------cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---H
Confidence 36788888876443211 11234455688888888888777766677788899999999999887665421 1
Q ss_pred hhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH-HHHHHH---hcCC
Q 046380 282 AILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK-SLEELI---SACI 357 (434)
Q Consensus 282 ~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~-~l~~l~---~~~p 357 (434)
+.+++|+.|.+.+ -.............+++|+.|+|+.-...... -+...+ ..+|
T Consensus 192 S~LknLq~L~mrn---------------------Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp 250 (699)
T KOG3665|consen 192 SRLKNLQVLSMRN---------------------LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP 250 (699)
T ss_pred hccccHHHHhccC---------------------CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence 2244444443333 11110011123456788888888766322222 222222 3699
Q ss_pred ccceEEeecccccccccc---ccccccceeEeccCCccc
Q 046380 358 LLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDHLH 393 (434)
Q Consensus 358 ~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~ 393 (434)
+|+.|+.+++.+....++ ...++|+.+..-+|....
T Consensus 251 eLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~ 289 (699)
T KOG3665|consen 251 ELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALS 289 (699)
T ss_pred cccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccc
Confidence 999999998877332222 245677777766664443
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.41 E-value=9.8e-05 Score=66.71 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=76.5
Q ss_pred HHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccc--ee-ecCC
Q 046380 252 FESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIAS--FH-FGGR 328 (434)
Q Consensus 252 ~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~-~~~~ 328 (434)
....+++..+|+.|.+++|.+..+...-...++.+|-..+ -.-+-|.|+......++....+ .+ ..+.
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK---------Kaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK---------KAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh---------hhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 3445677777777777777665443211111222221111 0113688888877666532111 11 2334
Q ss_pred CCCCccEEEEcCccCCcHHHHHHHH----hcCCccceEEeeccccccccc------cccccccceeEeccCCcc
Q 046380 329 GFGNIKTLAVNGFLGLRNKSLEELI----SACILLENLYLNSCAIPKGHL------EIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 329 ~~~~Lk~L~l~~~~~~~~~~l~~l~----~~~p~Le~L~l~~~~~~~~~~------~~~~~~L~~L~l~~c~~l 392 (434)
...+|+++.|..+ ++..+++..++ ..+.+||.|+|+.+.++.... -...+.|+.|.+.+|-.-
T Consensus 183 sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 183 SHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 5579999999888 77777655443 478999999999987643111 112235888999999543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.20 E-value=0.00047 Score=74.44 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=56.5
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEe--e-ChHHHHHhcCCCcceeeeccccCCCCcc
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE--M-DAPRLNYFQCSGIRDFDEAFVYRPDHFC 220 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~--~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~ 220 (434)
.++..+.++.+ .. +....++.|++|-+.. .. + .....++...|.|+.|++++|....
T Consensus 525 ~rr~s~~~~~~~~~----------~~~~~~~~L~tLll~~------n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--- 585 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHI----------AGSSENPKLRTLLLQR------NSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--- 585 (889)
T ss_pred eeEEEEeccchhhc----------cCCCCCCccceEEEee------cchhhhhcCHHHHhhCcceEEEECCCCCccC---
Confidence 66777777666 33 4556777888888887 43 2 2334456778888888888765521
Q ss_pred cccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 221 CRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 221 ~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
.++.....+-+|++|+++++.+.. ...-+..+..|.+|++...
T Consensus 586 -----~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 586 -----KLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred -----cCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccc
Confidence 122223344455566555544332 1122344455555555544
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.17 E-value=0.00015 Score=68.77 Aligned_cols=84 Identities=14% Similarity=0.037 Sum_probs=48.8
Q ss_pred cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH-HHHHHhcCCccceEEeecccccccccc-c-cccc
Q 046380 304 HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS-LEELISACILLENLYLNSCAIPKGHLE-I-YSLT 380 (434)
Q Consensus 304 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~-l~~l~~~~p~Le~L~l~~~~~~~~~~~-~-~~~~ 380 (434)
..|+|++++++++..+.- ....+.+...++.|.+..+ ..+. -...+++...|+.|+|.+++++.-... + .-..
T Consensus 272 ~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL~L~~N---~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRI-EDGAFEGAAELQELYLTRN---KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred hcccceEeccCCCccchh-hhhhhcchhhhhhhhcCcc---hHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 367788888777663310 0112345566777777666 2222 233456888999999999888442211 1 1236
Q ss_pred cceeEeccCCc
Q 046380 381 LKTLVVHGCDH 391 (434)
Q Consensus 381 L~~L~l~~c~~ 391 (434)
|..|.+...+.
T Consensus 348 l~~l~l~~Np~ 358 (498)
T KOG4237|consen 348 LSTLNLLSNPF 358 (498)
T ss_pred eeeeehccCcc
Confidence 77777665543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.12 E-value=4e-05 Score=77.77 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=83.6
Q ss_pred CCCcccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeec
Q 046380 77 DFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIG 156 (434)
Q Consensus 77 ~~~~l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~ 156 (434)
.+++...|+ .-.....+...+...-....+-+..+.+.+.... ...+.. |-.+|...+ |++|.|++|.+.
T Consensus 53 ~g~~~~~f~---a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~p-----a~~pt~-pi~ifpF~s-Lr~LElrg~~L~ 122 (1096)
T KOG1859|consen 53 SGAPVDYFR---AYVSDNADSRVLEQLQRILDFLQKTKVLKLLPSP-----ARDPTE-PISIFPFRS-LRVLELRGCDLS 122 (1096)
T ss_pred CCCCCceeE---EecCCcccchHHHHHHHHHHHHhhheeeeecccC-----CCCCCC-Cceeccccc-eeeEEecCcchh
Confidence 456677777 3222223333333332221133666677765544 122333 888999999 999999999873
Q ss_pred ccccccccccccccccC-cccceEEEeeecccceEeeChHHHHHhcCC-----Ccceeee--ccccCCCCcccccccccc
Q 046380 157 AYQKNTVMGLTLSNFFN-PSVRRLVVRGCMALQGFEMDAPRLNYFQCS-----GIRDFDE--AFVYRPDHFCCRFLEFKV 228 (434)
Q Consensus 157 ~~~~~~~~~l~~~~~~~-~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp-----~L~~L~l--~~~~~~~~~~~~~l~~~~ 228 (434)
. +.|| ..+ ..|++|--.+ ..+.+..+++.|- .+.+..| .+|. |+.+....
T Consensus 123 ~-----~~GL----~~lr~qLe~LIC~~-------Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fs------yN~L~~mD 180 (1096)
T KOG1859|consen 123 T-----AKGL----QELRHQLEKLICHN-------SLDALRHVFASCGGDISNSPVWNKLATASFS------YNRLVLMD 180 (1096)
T ss_pred h-----hhhh----HHHHHhhhhhhhhc-------cHHHHHHHHHHhccccccchhhhhHhhhhcc------hhhHHhHH
Confidence 2 1222 222 2466665443 1136777776652 1111111 1111 11111111
Q ss_pred eeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCC
Q 046380 229 ANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPS 277 (434)
Q Consensus 229 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~ 277 (434)
....-+|.|++|+++.....+. ..+..++.|++|+|+.|.+..+|.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccc
Confidence 1223356666666665443322 256667777777777666665553
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.07 E-value=0.00042 Score=74.81 Aligned_cols=41 Identities=17% Similarity=-0.034 Sum_probs=23.8
Q ss_pred cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccC
Q 046380 170 NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 170 ~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
+..+|.|+.|+|++|... ..++..++..-+|+.|+++++..
T Consensus 567 f~~m~~LrVLDLs~~~~l-----~~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSL-----SKLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred HhhCcceEEEECCCCCcc-----CcCChHHhhhhhhhcccccCCCc
Confidence 445666777777653111 24555566666666666666655
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.90 E-value=0.00092 Score=60.57 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=65.3
Q ss_pred ccCCCCcEEEeeccccccCCCCcchhhc---cCccEEEeecC-C---CCcceee----cCCcccEEEeccccCcccc---
Q 046380 257 SKFSNLETLKLLSSVFGKLPSSLSSAIL---KKLKLVRMENC-R---FDGPVEI----HSPNLETFVYKAGHGEIAS--- 322 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~---~~L~~L~l~~c-~---~l~~~~~----~~p~L~~L~l~~~~~~~~~--- 322 (434)
..-|.|+......|.+..-|.-..+..| .+|+.+++... - .+..+.+ -+.+|+.|++..+..++.+
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 4566677766666655544432222222 26666666542 1 1222221 3788888888876544322
Q ss_pred eeecCCCCCCccEEEEcCccCCcHHHHHHHHh-----cCCccceEEeecccc
Q 046380 323 FHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS-----ACILLENLYLNSCAI 369 (434)
Q Consensus 323 ~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~-----~~p~Le~L~l~~~~~ 369 (434)
+-......++|+.|.+..| -.+.++...+++ ..|+|..|-.+++..
T Consensus 234 La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 234 LADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 1123456678899999888 556665555543 568888888887765
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.71 E-value=0.0049 Score=60.19 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=26.6
Q ss_pred ccCCCCcEEEeeccccccCCCCcchhhcc-CccEEEeecCCCCcceee-cCCcccEEEecc
Q 046380 257 SKFSNLETLKLLSSVFGKLPSSLSSAILK-KLKLVRMENCRFDGPVEI-HSPNLETFVYKA 315 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~-~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~ 315 (434)
..+++++.|++++|.+..+|. ++ +|++|.+.+|.++..+.- -.++|+.|.+.+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~ 103 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV------LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCH 103 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC------CCCCCcEEEccCCCCcccCCchhhhhhhheEccC
Confidence 334555566666555555552 22 455555555555433322 234555555554
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.67 E-value=0.00087 Score=47.11 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=32.2
Q ss_pred eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEeeC-hHHHHHhcCCCcceeeecccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEMD-APRLNYFQCSGIRDFDEAFVY 214 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~~-~l~~~~~~cp~L~~L~l~~~~ 214 (434)
|++|++++|.+.. +++ .+.++++|++|++++ ..+. --...+.++|+|++|.+++|.
T Consensus 3 L~~L~l~~n~l~~--------i~~~~f~~l~~L~~L~l~~------N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTE--------IPPDSFSNLPNLETLDLSN------NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESE--------ECTTTTTTGTTESEEEETS------SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCc--------cCHHHHcCCCCCCEeEccC------CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 6677777776522 122 344677777777776 3331 122345667777777776664
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.63 E-value=0.0003 Score=64.50 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=76.7
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF 223 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~ 223 (434)
|+.++|+++.+ .. -.+..-.|.++.|++++ +.+..+.. ++..++|++|+++++.....
T Consensus 286 LtelDLS~N~I~~i---------DESvKL~Pkir~L~lS~------N~i~~v~n-La~L~~L~~LDLS~N~Ls~~----- 344 (490)
T KOG1259|consen 286 LTELDLSGNLITQI---------DESVKLAPKLRRLILSQ------NRIRTVQN-LAELPQLQLLDLSGNLLAEC----- 344 (490)
T ss_pred hhhccccccchhhh---------hhhhhhccceeEEeccc------cceeeehh-hhhcccceEeecccchhHhh-----
Confidence 88999999877 22 24556788999999998 44412222 56688999999998876432
Q ss_pred ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380 224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR 296 (434)
Q Consensus 224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~ 296 (434)
......+-|.+.|.+++..+.+- +-+..+-+|..|++++|.++.+-.--..++++.|+++.+.+.+
T Consensus 345 ----~Gwh~KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 345 ----VGWHLKLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ----hhhHhhhcCEeeeehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 22344566777777765433221 1234555677777887766553221123346667777666643
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.0012 Score=60.62 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=80.2
Q ss_pred hhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecC-C
Q 046380 250 RTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGG-R 328 (434)
Q Consensus 250 ~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~-~ 328 (434)
+.+..+-..++.++.|++.+|.+..... +..+.-++|.|+.|+++++... +..... .
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWse--------------------I~~ile~lP~l~~LNls~N~L~--s~I~~lp~ 118 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSE--------------------IGAILEQLPALTTLNLSCNSLS--SDIKSLPL 118 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHH--------------------HHHHHhcCccceEeeccCCcCC--CccccCcc
Confidence 3444455667777777777776544321 0111115777888888776532 111112 3
Q ss_pred CCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccc-----cccccccccccceeEeccCCccc
Q 046380 329 GFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIP-----KGHLEIYSLTLKTLVVHGCDHLH 393 (434)
Q Consensus 329 ~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~c~~l~ 393 (434)
...||++|.+.|. ++.+..+..++...|.++.|+++.+... ...++-.++.+++|++..|....
T Consensus 119 p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~ 187 (418)
T KOG2982|consen 119 PLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL 187 (418)
T ss_pred cccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH
Confidence 5679999999998 8999999999999999999999887431 13344456688889988887654
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.53 E-value=0.002 Score=45.20 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=44.7
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEee
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRG 183 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~ 183 (434)
+++++|++..+. ...+|...|...++|++|++++|.+.. +++ .+.++++|++|++++
T Consensus 1 p~L~~L~l~~n~--------l~~i~~~~f~~l~~L~~L~l~~N~l~~--------i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNK--------LTEIPPDSFSNLPNLETLDLSNNNLTS--------IPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSST--------ESEECTTTTTTGTTESEEEETSSSESE--------EETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCC--------CCccCHHHHcCCCCCCEeEccCCccCc--------cCHHHHcCCCCCCEEeCcC
Confidence 467888888765 778888888765559999999998822 123 467999999999998
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.32 E-value=0.012 Score=57.53 Aligned_cols=161 Identities=11% Similarity=0.018 Sum_probs=77.6
Q ss_pred hcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhc-cCCCCcEEEeecc-ccccCCC
Q 046380 200 FQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALS-KFSNLETLKLLSS-VFGKLPS 277 (434)
Q Consensus 200 ~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~p~ 277 (434)
..|+++++|.+++|... .++ ..-++|++|.++++..- ..+.. -.++|+.|++++| .+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~---------sLP---~LP~sLtsL~Lsnc~nL----tsLP~~LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIE---------SLP---VLPNELTEITIENCNNL----TTLPGSIPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCc---------ccC---CCCCCCcEEEccCCCCc----ccCCchhhhhhhheEccCccccccccc
Confidence 44677777777777431 111 12235666666553211 00111 1246777777776 5555553
Q ss_pred CcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcC-
Q 046380 278 SLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISAC- 356 (434)
Q Consensus 278 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~- 356 (434)
+|++|.+.. .....+.--.++|+.|.+...... ........--++|++|.+.+|.... +....
T Consensus 113 --------sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~-~~~~lp~~LPsSLk~L~Is~c~~i~------LP~~LP 176 (426)
T PRK15386 113 --------SVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPE-NQARIDNLISPSLKTLSLTGCSNII------LPEKLP 176 (426)
T ss_pred --------ccceEEeCC-CCCcccccCcchHhheeccccccc-cccccccccCCcccEEEecCCCccc------Cccccc
Confidence 466676643 222222223456777776432100 0000001112578888888773221 11112
Q ss_pred CccceEEeeccccc--cccccccccccceeEeccCCccc
Q 046380 357 ILLENLYLNSCAIP--KGHLEIYSLTLKTLVVHGCDHLH 393 (434)
Q Consensus 357 p~Le~L~l~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~ 393 (434)
++|+.|+++.+... .-........+ .|.+.+|..++
T Consensus 177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred ccCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence 47888887765311 11122233456 77777775553
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.17 E-value=0.0019 Score=60.02 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=35.5
Q ss_pred CCCCCCCCC----HHHHHHHHcCCChHHHHHHhhhhhhhhhc
Q 046380 3 AIDRISFLP----DDLTHHIMSLLPMKDIARTSILSKRWMSH 40 (434)
Q Consensus 3 ~~D~is~LP----deiL~~I~s~L~~~~~~r~~~vskrW~~l 40 (434)
..|+|+.|| |++-..||+||+..++..+-+|||+|+++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 359999999 99999999999999999999999999863
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.58 E-value=0.0093 Score=59.07 Aligned_cols=166 Identities=21% Similarity=0.207 Sum_probs=82.5
Q ss_pred eeEEEEeeeee-cccccccccccccccccCc-ccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNP-SVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCR 222 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~-~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~ 222 (434)
++.|.+.++.+ +. ++.....+ +|+.|++++ ..+..+..-+..+|+|+.|.+.+|...+.
T Consensus 118 l~~L~l~~n~i~~i---------~~~~~~~~~nL~~L~l~~------N~i~~l~~~~~~l~~L~~L~l~~N~l~~l---- 178 (394)
T COG4886 118 LTSLDLDNNNITDI---------PPLIGLLKSNLKELDLSD------NKIESLPSPLRNLPNLKNLDLSFNDLSDL---- 178 (394)
T ss_pred eeEEecCCcccccC---------ccccccchhhcccccccc------cchhhhhhhhhccccccccccCCchhhhh----
Confidence 77777777766 33 34445553 788888887 43322223467788888888888877322
Q ss_pred cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCc-ce
Q 046380 223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG-PV 301 (434)
Q Consensus 223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~-~~ 301 (434)
.......++|+.|.+++....+-.. .+....+|++|.++++.....+.. ...+.++..+.+..-.... ..
T Consensus 179 -----~~~~~~~~~L~~L~ls~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 179 -----PKLLSNLSNLNNLDLSGNKISDLPP--EIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred -----hhhhhhhhhhhheeccCCccccCch--hhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeeccc
Confidence 2222256666666666554433211 112334466666666632222210 1123333333322211111 01
Q ss_pred ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380 302 EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF 341 (434)
Q Consensus 302 ~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~ 341 (434)
.+ ..+++++|+++++... .+.. .....+++.|.+++.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~--~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS--SISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hhccccccceecccccccc--cccc-ccccCccCEEeccCc
Confidence 11 3555666666665432 1111 344556666666554
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.53 E-value=0.006 Score=60.41 Aligned_cols=176 Identities=17% Similarity=0.154 Sum_probs=109.9
Q ss_pred ccccCcccceEEEeeecccceEeeChHHHHHhcC-CCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEe
Q 046380 169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQC-SGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVL 247 (434)
Q Consensus 169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~c-p~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~ 247 (434)
....++.++.|.+.. +.+..+....... ++|+.|.++++..... ......+|+|+.|.+++...
T Consensus 111 ~~~~~~~l~~L~l~~------n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l---------~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 111 ELLELTNLTSLDLDN------NNITDIPPLIGLLKSNLKELDLSDNKIESL---------PSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred hhhcccceeEEecCC------cccccCccccccchhhcccccccccchhhh---------hhhhhccccccccccCCchh
Confidence 345667899999988 6552334434444 4899999998887321 22356788999998887765
Q ss_pred CchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCccee-e-cCCcccEEEeccccCcccceee
Q 046380 248 NDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE-I-HSPNLETFVYKAGHGEIASFHF 325 (434)
Q Consensus 248 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~-~-~~p~L~~L~l~~~~~~~~~~~~ 325 (434)
.+... .....++|+.|+++++.+..+|.. .....+|++|.+.+...+..+. + ...++..+.+..+... .+..
T Consensus 176 ~~l~~--~~~~~~~L~~L~ls~N~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~--~~~~ 249 (394)
T COG4886 176 SDLPK--LLSNLSNLNNLDLSGNKISDLPPE--IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE--DLPE 249 (394)
T ss_pred hhhhh--hhhhhhhhhheeccCCccccCchh--hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee--eccc
Confidence 54322 123788999999999998888752 1234458888877754333222 2 4566666664443322 1123
Q ss_pred cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 326 GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 326 ~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
......++++|.+.++. ++.- .. +....+|+.|++++...
T Consensus 250 ~~~~l~~l~~L~~s~n~-i~~i--~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 250 SIGNLSNLETLDLSNNQ-ISSI--SS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhccccccceecccccc-cccc--cc-ccccCccCEEeccCccc
Confidence 34566678888887772 2222 11 45778888888887655
No 55
>PLN03150 hypothetical protein; Provisional
Probab=95.17 E-value=0.021 Score=60.00 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=24.4
Q ss_pred HhccCCCCcEEEeeccccc-cCCCCcchhhccCccEEEeecC
Q 046380 255 ALSKFSNLETLKLLSSVFG-KLPSSLSSAILKKLKLVRMENC 295 (434)
Q Consensus 255 ~~~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~c 295 (434)
.+..+++|+.|++++|.+. .+|..+ ...+.++..+++.++
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N 525 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDN 525 (623)
T ss_pred HHhcCCCCCEEECcCCcccccCChHH-hhccccCceEEecCC
Confidence 4567888888888888765 356432 122335556666654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.64 E-value=0.032 Score=36.22 Aligned_cols=35 Identities=3% Similarity=-0.046 Sum_probs=15.6
Q ss_pred ccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccC
Q 046380 175 SVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 175 ~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
+|++|++++ ..+..+...++++|+|+.|.+++|..
T Consensus 2 ~L~~L~l~~------N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSN------NQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETS------SS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccC------CCCcccCchHhCCCCCCEEEecCCCC
Confidence 455555555 33312233344555555555555544
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.57 E-value=0.01 Score=53.65 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=48.3
Q ss_pred cCCCCcEEEeecccccc---CCCCcchhhccCccEEEeecC-----CCCcceeecCCcccEEEeccccCcccceeecCCC
Q 046380 258 KFSNLETLKLLSSVFGK---LPSSLSSAILKKLKLVRMENC-----RFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRG 329 (434)
Q Consensus 258 ~~~~L~~L~l~~~~~~~---~p~~~~~~~~~~L~~L~l~~c-----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~ 329 (434)
.+.+|+.|++.++.++. +|. +++||+|.++.. ..+..+...+|+|+++.+++++..+-+.......
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~------Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPK------LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeecccCCC------cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 34455555555443322 342 556666666542 1122222245777777766665443222233445
Q ss_pred CCCccEEEEcCccCCc-HHHHHHHHhcCCccceEE
Q 046380 330 FGNIKTLAVNGFLGLR-NKSLEELISACILLENLY 363 (434)
Q Consensus 330 ~~~Lk~L~l~~~~~~~-~~~l~~l~~~~p~Le~L~ 363 (434)
+.||++|.+.+|.... +..-..++.-+|+|+.|+
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 5666666666663111 112233344455565555
No 58
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.52 E-value=0.015 Score=53.74 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=30.3
Q ss_pred CCCCCCCHHHHHHHHcC-----CChHHHHHHhhhhhhhhh
Q 046380 5 DRISFLPDDLTHHIMSL-----LPMKDIARTSILSKRWMS 39 (434)
Q Consensus 5 D~is~LPdeiL~~I~s~-----L~~~~~~r~~~vskrW~~ 39 (434)
+-|+.||||||..||.. |+.+++.++++|||.|+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 44789999999999975 456999999999999975
No 59
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.44 E-value=0.031 Score=54.02 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHcCCC-hHHHHHHhhhhhhhhhcc
Q 046380 7 ISFLPDDLTHHIMSLLP-MKDIARTSILSKRWMSHW 41 (434)
Q Consensus 7 is~LPdeiL~~I~s~L~-~~~~~r~~~vskrW~~lw 41 (434)
.++||+|+|..|..+|+ .-|++|.+.|||.||.-.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~ 39 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSV 39 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhc
Confidence 68999999999999995 689999999999999844
No 60
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.41 E-value=0.0027 Score=60.54 Aligned_cols=226 Identities=14% Similarity=0.041 Sum_probs=119.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+...+|++.-.. ...+|+.+|...++|++|+|+++.++. |. ..+.++++|.+|.+-+..+.+.
T Consensus 67 ~~tveirLdqN~--------I~~iP~~aF~~l~~LRrLdLS~N~Is~--------I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 67 PETVEIRLDQNQ--------ISSIPPGAFKTLHRLRRLDLSKNNISF--------IAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CcceEEEeccCC--------cccCChhhccchhhhceecccccchhh--------cChHhhhhhHhhhHHHhhcCCchhh
Confidence 577788887655 788999999886669999999998722 11 2344777777776665322211
Q ss_pred -------------------EeeC-hHHHHHhcCCCcceeeeccccCCCCcc----------------------ccc----
Q 046380 190 -------------------FEMD-APRLNYFQCSGIRDFDEAFVYRPDHFC----------------------CRF---- 223 (434)
Q Consensus 190 -------------------~~~~-~l~~~~~~cp~L~~L~l~~~~~~~~~~----------------------~~~---- 223 (434)
.+++ ..+..+...|+|..|.+.++..-.... |..
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 1111 223344555777777776665421100 110
Q ss_pred --cc----ccceeeccCC------------------ceeEE--EEE-eEEeCchhHHHHhccCCCCcEEEeeccccccCC
Q 046380 224 --LE----FKVANENSMS------------------SLETL--VFS-FMVLNDRTFESALSKFSNLETLKLLSSVFGKLP 276 (434)
Q Consensus 224 --l~----~~~~~~~~~p------------------~L~~L--~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p 276 (434)
+. +........| +++.+ .++ .+......-..-+..+++|+.|++++|.++.+.
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 00 0000000000 01111 000 111111112334678899999999999887764
Q ss_pred CCcchhhccCccEEEeecCC--CCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc---CCcHHHHH
Q 046380 277 SSLSSAILKKLKLVRMENCR--FDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL---GLRNKSLE 350 (434)
Q Consensus 277 ~~~~~~~~~~L~~L~l~~c~--~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~---~~~~~~l~ 350 (434)
.+. ......++.|.+.... .++.-.+ ....|++|++++++.+. -.+..+.....|.+|.+-++. +....++.
T Consensus 291 ~~a-Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~-~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 291 DGA-FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT-VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred hhh-hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE-EecccccccceeeeeehccCcccCccchHHHH
Confidence 321 1223355555555421 1222223 57888899999887441 123456677788888886553 23334555
Q ss_pred HHHh
Q 046380 351 ELIS 354 (434)
Q Consensus 351 ~l~~ 354 (434)
..++
T Consensus 369 ~Wlr 372 (498)
T KOG4237|consen 369 EWLR 372 (498)
T ss_pred HHHh
Confidence 5554
No 61
>PLN03150 hypothetical protein; Provisional
Probab=94.38 E-value=0.032 Score=58.68 Aligned_cols=106 Identities=8% Similarity=0.013 Sum_probs=73.1
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF 223 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~ 223 (434)
++.|+|.++.+.. .+|+....+++|+.|+|++ +.+ ..+...+..+++|+.|++++|.....
T Consensus 420 v~~L~L~~n~L~g-------~ip~~i~~L~~L~~L~Ls~------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~----- 481 (623)
T PLN03150 420 IDGLGLDNQGLRG-------FIPNDISKLRHLQSINLSG------NSIRGNIPPSLGSITSLEVLDLSYNSFNGS----- 481 (623)
T ss_pred EEEEECCCCCccc-------cCCHHHhCCCCCCEEECCC------CcccCcCChHHhCCCCCCEEECCCCCCCCC-----
Confidence 7888998887721 1345677899999999998 555 45666678899999999999977321
Q ss_pred ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccc
Q 046380 224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSV 271 (434)
Q Consensus 224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 271 (434)
++.....+++|+.|+++++......-..+.....++..+++.+|.
T Consensus 482 ---iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 482 ---IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ---CchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 233345788999999987765543222222234566778887763
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.34 E-value=0.012 Score=53.27 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=61.2
Q ss_pred hccCccEEEeecCCCCcceee-cCCcccEEEeccccCcc-cceeecCCCCCCccEEEEcCccCCcH-HHHHHHHhcCCcc
Q 046380 283 ILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEI-ASFHFGGRGFGNIKTLAVNGFLGLRN-KSLEELISACILL 359 (434)
Q Consensus 283 ~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~~~~Lk~L~l~~~~~~~~-~~l~~l~~~~p~L 359 (434)
.+..|+.|.+.++...+...+ .+|+|++|.++.++... .++......+++|++|.++++ .+.+ ..+..+ +..++|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl-~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPL-KELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchh-hhhcch
Confidence 366788888888766666666 78999999999885332 234444566799999999998 4443 333333 477889
Q ss_pred ceEEeeccccc
Q 046380 360 ENLYLNSCAIP 370 (434)
Q Consensus 360 e~L~l~~~~~~ 370 (434)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 99999999863
No 63
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=94.23 E-value=0.063 Score=30.40 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.3
Q ss_pred ccceEEEeeecccceEee-C--hHHHHHhcCC
Q 046380 175 SVRRLVVRGCMALQGFEM-D--APRLNYFQCS 203 (434)
Q Consensus 175 ~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp 203 (434)
+||+|+|.. +.+ + .++.++++||
T Consensus 1 sLKtL~L~~------v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDS------VVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeE------EEECChhHHHHhhccCc
Confidence 589999999 888 4 7999999998
No 64
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.68 E-value=0.0039 Score=62.18 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=85.8
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE 210 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l 210 (434)
...+|..+..+.. |+.+.|..+.+.. +|+...++..|+.|+|+. ..+..+..-+..|| |+.|.+
T Consensus 87 ~~elp~~~~~f~~-Le~liLy~n~~r~--------ip~~i~~L~~lt~l~ls~------NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 87 FSELPEEACAFVS-LESLILYHNCIRT--------IPEAICNLEALTFLDLSS------NQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccCchHHHHHHH-HHHHHHHhcccee--------cchhhhhhhHHHHhhhcc------chhhcCChhhhcCc-ceeEEE
Confidence 4455555444445 7777777766633 346667888888888887 43322333333444 777877
Q ss_pred ccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEE
Q 046380 211 AFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLV 290 (434)
Q Consensus 211 ~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L 290 (434)
+++.... ++.-....+.|..|+.+.+.. .+....+.++..|+.|.+..+.+..+|.- +..|.-.
T Consensus 151 sNNkl~~---------lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~lp~E-----l~~LpLi 214 (722)
T KOG0532|consen 151 SNNKLTS---------LPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLEDLPEE-----LCSLPLI 214 (722)
T ss_pred ecCcccc---------CCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhhCCHH-----HhCCcee
Confidence 7776521 122222556666666654432 22333456777777788877777776642 2233333
Q ss_pred Eee-cCCCCcceee---cCCcccEEEecccc
Q 046380 291 RME-NCRFDGPVEI---HSPNLETFVYKAGH 317 (434)
Q Consensus 291 ~l~-~c~~l~~~~~---~~p~L~~L~l~~~~ 317 (434)
.++ .|..+..+.+ ++..|++|.+..+.
T Consensus 215 ~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 215 RLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeecccCceeecchhhhhhhhheeeeeccCC
Confidence 333 2445544444 45566666665543
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=0.048 Score=47.56 Aligned_cols=69 Identities=16% Similarity=0.070 Sum_probs=46.9
Q ss_pred ccccccccCCCceeEEEEeeeee---cccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcce
Q 046380 133 ALPRVIFSSGSFLVSLTIRHCKI---GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRD 207 (434)
Q Consensus 133 ~lp~~~~~~~~~L~~L~L~~~~~---~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~ 207 (434)
.+|..-...-. ++.++=+++.+ +. ....++++++.|.+.+| -++ | .++.+-.-.|+|+.
T Consensus 92 ~lp~~~~~~~~-IeaVDAsds~I~~eGl----------e~L~~l~~i~~l~l~~c-----k~~dD~~L~~l~~~~~~L~~ 155 (221)
T KOG3864|consen 92 SLPGPNADNVK-IEAVDASDSSIMYEGL----------EHLRDLRSIKSLSLANC-----KYFDDWCLERLGGLAPSLQD 155 (221)
T ss_pred cCCCCCCCcce-EEEEecCCchHHHHHH----------HHHhccchhhhheeccc-----cchhhHHHHHhcccccchhe
Confidence 55554444444 77777777655 22 45667888888888885 333 5 77777777888888
Q ss_pred eeeccccCCC
Q 046380 208 FDEAFVYRPD 217 (434)
Q Consensus 208 L~l~~~~~~~ 217 (434)
|.+++|...+
T Consensus 156 L~lsgC~rIT 165 (221)
T KOG3864|consen 156 LDLSGCPRIT 165 (221)
T ss_pred eeccCCCeec
Confidence 8888887643
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.62 E-value=0.07 Score=34.58 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=22.7
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEee
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRG 183 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 183 (434)
|++|+++++.+ +. ++....+++|+.|++++
T Consensus 3 L~~L~l~~N~i~~l---------~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 3 LEELDLSNNQITDL---------PPELSNLPNLETLNLSN 33 (44)
T ss_dssp -SEEEETSSS-SSH---------GGHGTTCTTSSEEEETS
T ss_pred ceEEEccCCCCccc---------CchHhCCCCCCEEEecC
Confidence 88999999888 44 34478899999999988
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.38 E-value=0.17 Score=44.21 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=60.2
Q ss_pred ceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccCCCCc
Q 046380 144 FLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYRPDHF 219 (434)
Q Consensus 144 ~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~ 219 (434)
+|.+|.|.++.+ ++. |.....+|+|+.|.|.+ ..+ . ++.. ++.||.|+.|.+-++...+..
T Consensus 65 rL~tLll~nNrIt~I~--------p~L~~~~p~l~~L~Ltn------Nsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 65 RLHTLLLNNNRITRID--------PDLDTFLPNLKTLILTN------NSIQELGDLDP-LASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred ccceEEecCCcceeec--------cchhhhccccceEEecC------cchhhhhhcch-hccCCccceeeecCCchhccc
Confidence 399999999887 331 12345789999999998 655 2 3333 567999999999998875432
Q ss_pred ccccccccceeeccCCceeEEEEEeEEeCc
Q 046380 220 CCRFLEFKVANENSMSSLETLVFSFMVLND 249 (434)
Q Consensus 220 ~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~ 249 (434)
. ....+....|+|+.|++.+....+
T Consensus 130 ~-----YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 130 N-----YRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred C-----ceeEEEEecCcceEeehhhhhHHH
Confidence 2 123455678999999888765443
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.36 E-value=0.14 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=20.2
Q ss_pred CCCccEEEEcCccCCcHHHHHHHHh
Q 046380 330 FGNIKTLAVNGFLGLRNKSLEELIS 354 (434)
Q Consensus 330 ~~~Lk~L~l~~~~~~~~~~l~~l~~ 354 (434)
|++|++|++++|..+++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5788889999988888888877653
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=0.04 Score=48.05 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=44.3
Q ss_pred CCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc-cccccc--ccccceeEeccCCccc
Q 046380 327 GRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK-GHLEIY--SLTLKTLVVHGCDHLH 393 (434)
Q Consensus 327 ~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~-~~~~~~--~~~L~~L~l~~c~~l~ 393 (434)
+..++.|++|.+.+|..+.+..+..+..-+|+||.|+|++|.-.+ ..+... ..+|+.|.+.+-+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 455667777788888777777777777777888888888776422 222221 3466667766665554
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.86 E-value=0.029 Score=56.04 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=58.5
Q ss_pred eeEEEEeeeee-cccccccccccccc-cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCR 222 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~ 222 (434)
|+.|.+.++.+ .. .. ...+++|++|++++ ..+..+.. +..++.|+.|.+.+|.+......
T Consensus 97 l~~l~l~~n~i~~i----------~~~l~~~~~L~~L~ls~------N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~- 158 (414)
T KOG0531|consen 97 LEALDLYDNKIEKI----------ENLLSSLVNLQVLDLSF------NKITKLEG-LSTLTLLKELNLSGNLISDISGL- 158 (414)
T ss_pred eeeeeccccchhhc----------ccchhhhhcchheeccc------cccccccc-hhhccchhhheeccCcchhccCC-
Confidence 77778877777 33 33 56778888888877 55411111 22344578888877776433221
Q ss_pred cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccC
Q 046380 223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKL 275 (434)
Q Consensus 223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 275 (434)
-.+++|+.+.+++.......... ...+.+++.+.+.++.+..+
T Consensus 159 ---------~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 159 ---------ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred ---------ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 11566666666655443322111 35667777777776655443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=0.027 Score=51.55 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=49.0
Q ss_pred cCccEEEeecCCCCcceee--cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceE
Q 046380 285 KKLKLVRMENCRFDGPVEI--HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENL 362 (434)
Q Consensus 285 ~~L~~L~l~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L 362 (434)
.+.++|+.-+|. +..+.+ .+|.||.|.++-+.++ ++ ..+..|++|+.|.+..+ .+.+-.=...++++|+|+.|
T Consensus 19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIs--sL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKIS--SL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccc--cc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 345555555543 444555 5888888888776533 22 23567888888888766 23333333445688888888
Q ss_pred Eeecccc
Q 046380 363 YLNSCAI 369 (434)
Q Consensus 363 ~l~~~~~ 369 (434)
-|..++-
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 8877553
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=0.045 Score=50.14 Aligned_cols=54 Identities=13% Similarity=-0.037 Sum_probs=40.7
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccC
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
|++|.|+-+++ .. .....|.+|++|.|.. +.+ + .+. -+.+.|+|+.|-|..+..
T Consensus 43 lEVLsLSvNkIssL----------~pl~rCtrLkElYLRk------N~I~sldEL~-YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 43 LEVLSLSVNKISSL----------APLQRCTRLKELYLRK------NCIESLDELE-YLKNLPSLRTLWLDENPC 100 (388)
T ss_pred ceeEEeeccccccc----------hhHHHHHHHHHHHHHh------cccccHHHHH-HHhcCchhhhHhhccCCc
Confidence 88888888877 33 5567888999999988 666 4 333 367788999888887766
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.21 E-value=0.18 Score=51.82 Aligned_cols=38 Identities=29% Similarity=0.549 Sum_probs=35.5
Q ss_pred CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc
Q 046380 3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSH 40 (434)
Q Consensus 3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l 40 (434)
..|+|+.||-|+..+||++|+.++++++++||+.|+.+
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 45999999999999999999999999999999999854
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.18 E-value=0.22 Score=25.01 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=8.3
Q ss_pred CCCcEEEeeccccccCC
Q 046380 260 SNLETLKLLSSVFGKLP 276 (434)
Q Consensus 260 ~~L~~L~l~~~~~~~~p 276 (434)
++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46677777766655544
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.92 E-value=0.29 Score=42.91 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=53.1
Q ss_pred HhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCC--Ccce-ee-cCCcccEEEeccccCccc-cee-ecCC
Q 046380 255 ALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRF--DGPV-EI-HSPNLETFVYKAGHGEIA-SFH-FGGR 328 (434)
Q Consensus 255 ~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~--l~~~-~~-~~p~L~~L~l~~~~~~~~-~~~-~~~~ 328 (434)
.+.+++.|.+|.+..|.++.+... ....+++|+.|.+.+..- +..+ .+ .||+|++|.+-++.+..- ... ....
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 457788888888888888776331 244577788888877432 2222 22 578888888777654321 111 1234
Q ss_pred CCCCccEEEEcCc
Q 046380 329 GFGNIKTLAVNGF 341 (434)
Q Consensus 329 ~~~~Lk~L~l~~~ 341 (434)
.+++|+.|+..+.
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 5677777777666
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.53 E-value=0.083 Score=52.74 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=49.3
Q ss_pred cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCc
Q 046380 170 NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLND 249 (434)
Q Consensus 170 ~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~ 249 (434)
...+.+|+.|++.. ..+..+...+..+++|+.|+++++.+..... .-.++.|+.|++.+..+..
T Consensus 91 l~~~~~l~~l~l~~------n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----------l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD------NKIEKIENLLSSLVNLQVLDLSFNKITKLEG----------LSTLTLLKELNLSGNLISD 154 (414)
T ss_pred cccccceeeeeccc------cchhhcccchhhhhcchheeccccccccccc----------hhhccchhhheeccCcchh
Confidence 44556666666665 3331222224456666666666666543322 1123336666555544332
Q ss_pred hhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec
Q 046380 250 RTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN 294 (434)
Q Consensus 250 ~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~ 294 (434)
.. .+..+++|+.++++++.+..++... ...+.+++.+.+.+
T Consensus 155 ~~---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 155 IS---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred cc---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence 11 2233566666666666555443200 12344445444443
No 77
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=87.71 E-value=0.014 Score=60.03 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=58.5
Q ss_pred ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC
Q 046380 169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN 248 (434)
Q Consensus 169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~ 248 (434)
...-++.|+.|+|++ +++..+ +.+..||.|++|+|++|....+ +.+....-.|..|.+.+...+
T Consensus 182 SLqll~ale~LnLsh------Nk~~~v-~~Lr~l~~LkhLDlsyN~L~~v---------p~l~~~gc~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSH------NKFTKV-DNLRRLPKLKHLDLSYNCLRHV---------PQLSMVGCKLQLLNLRNNALT 245 (1096)
T ss_pred HHHHHHHhhhhccch------hhhhhh-HHHHhcccccccccccchhccc---------cccchhhhhheeeeecccHHH
Confidence 455677888888887 555111 1456688888888887766322 222233333666666654332
Q ss_pred chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec
Q 046380 249 DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN 294 (434)
Q Consensus 249 ~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~ 294 (434)
.- .-+..+.+|+.|+++.|.+.+.........+..|+.|.+.+
T Consensus 246 tL---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 246 TL---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hh---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 21 12456677777777777554422111122344556666555
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=87.13 E-value=0.63 Score=36.69 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHHcCCChHHHHHHhhhhh
Q 046380 6 RISFLPDDLTHHIMSLLPMKDIARTSILSK 35 (434)
Q Consensus 6 ~is~LPdeiL~~I~s~L~~~~~~r~~~vsk 35 (434)
.+.+||+||+..||.+-...+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 367899999999999999999988887777
No 79
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=83.10 E-value=1.5 Score=29.38 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCccEEEEcCccCCcHH--HHHHHHhcCCccceEEee
Q 046380 331 GNIKTLAVNGFLGLRNK--SLEELISACILLENLYLN 365 (434)
Q Consensus 331 ~~Lk~L~l~~~~~~~~~--~l~~l~~~~p~Le~L~l~ 365 (434)
.+|+.+.+.++.|...+ .+.+++++++.||++.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 68999999998776665 678999999999999875
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=82.71 E-value=0.63 Score=24.97 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=13.3
Q ss_pred CCcEEEeeccccccCCC
Q 046380 261 NLETLKLLSSVFGKLPS 277 (434)
Q Consensus 261 ~L~~L~l~~~~~~~~p~ 277 (434)
+|+.|++++|.++.+|.
T Consensus 1 ~L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS 17 (22)
T ss_dssp TESEEEETSSEESEEGT
T ss_pred CccEEECCCCcCEeCCh
Confidence 57888888888877775
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.11 E-value=1.5 Score=23.95 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=11.9
Q ss_pred CCccEEEEcCccCCcHHHHHHH
Q 046380 331 GNIKTLAVNGFLGLRNKSLEEL 352 (434)
Q Consensus 331 ~~Lk~L~l~~~~~~~~~~l~~l 352 (434)
++|++|+|+++ .++++++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 56667777666 4666666554
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=81.07 E-value=0.37 Score=48.62 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=85.1
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE 210 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l 210 (434)
...+|..++.+ . |+.|-++++++.. +|+..+..+.|..|+.+. +.+..+..-+.+...|+.|.+
T Consensus 133 lS~lp~~lC~l-p-Lkvli~sNNkl~~--------lp~~ig~~~tl~~ld~s~------nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 133 LSHLPDGLCDL-P-LKVLIVSNNKLTS--------LPEEIGLLPTLAHLDVSK------NEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhcCChhhhcC-c-ceeEEEecCcccc--------CCcccccchhHHHhhhhh------hhhhhchHHhhhHHHHHHHHH
Confidence 55666665443 5 8999999998833 356677889999999988 433234444556778888888
Q ss_pred ccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcch-hhccCccE
Q 046380 211 AFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS-AILKKLKL 289 (434)
Q Consensus 211 ~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~-~~~~~L~~ 289 (434)
..+...+... ....-.|.+|+++...+....+ -+..+..|++|.|.+|.++.=|..+-. +..-=.|+
T Consensus 197 rRn~l~~lp~----------El~~LpLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 197 RRNHLEDLPE----------ELCSLPLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred hhhhhhhCCH----------HHhCCceeeeecccCceeecch--hhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 8877643211 1123357777777655543332 357788899999998877664431100 01112455
Q ss_pred EEeecC
Q 046380 290 VRMENC 295 (434)
Q Consensus 290 L~l~~c 295 (434)
|++..|
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 666666
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=71.31 E-value=0.76 Score=37.87 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=37.3
Q ss_pred eeEEEEeeeee-ccccccccccccccc-ccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccC
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSN-FFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~-~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
|...+|+++.| +. |+.+ ..+|.+++|+|.+ ..+ |-.+. ++..|.|+.|+++++..
T Consensus 55 l~~i~ls~N~fk~f---------p~kft~kf~t~t~lNl~~------neisdvPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 55 LTKISLSDNGFKKF---------PKKFTIKFPTATTLNLAN------NEISDVPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred EEEEecccchhhhC---------CHHHhhccchhhhhhcch------hhhhhchHH-HhhhHHhhhcccccCcc
Confidence 66777777777 33 2222 3567888888887 666 43333 77788888888888876
No 84
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=68.94 E-value=6.5 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCccEEEEcCccCCcHH--HHHHHHhcCCccceEEeecccc
Q 046380 331 GNIKTLAVNGFLGLRNK--SLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 331 ~~Lk~L~l~~~~~~~~~--~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
.+|+.+.|.++.|...+ .+..++++++.||.+.|.....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~ 45 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETS 45 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecC
Confidence 56999999998766555 6789999999999999877553
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=66.82 E-value=4.5 Score=22.43 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=16.5
Q ss_pred CCCCcEEEeeccccccCCCC
Q 046380 259 FSNLETLKLLSSVFGKLPSS 278 (434)
Q Consensus 259 ~~~L~~L~l~~~~~~~~p~~ 278 (434)
+++|+.|++.+|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999998888853
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=66.82 E-value=4.5 Score=22.43 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=16.5
Q ss_pred CCCCcEEEeeccccccCCCC
Q 046380 259 FSNLETLKLLSSVFGKLPSS 278 (434)
Q Consensus 259 ~~~L~~L~l~~~~~~~~p~~ 278 (434)
+++|+.|++.+|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999998888853
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=50.41 E-value=3 Score=34.48 Aligned_cols=94 Identities=16% Similarity=0.046 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccc
Q 046380 99 LITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVR 177 (434)
Q Consensus 99 ~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~ 177 (434)
.+..-+.+.+....+..++++... ..++|..+-...+.++.|+|+++.+ ++ |.....+|.|+
T Consensus 41 ~i~davy~l~~~~el~~i~ls~N~--------fk~fp~kft~kf~t~t~lNl~~neisdv---------PeE~Aam~aLr 103 (177)
T KOG4579|consen 41 YIADAVYMLSKGYELTKISLSDNG--------FKKFPKKFTIKFPTATTLNLANNEISDV---------PEELAAMPALR 103 (177)
T ss_pred HHHHHHHHHhCCceEEEEecccch--------hhhCCHHHhhccchhhhhhcchhhhhhc---------hHHHhhhHHhh
Confidence 344444443112345555665444 6667776544433389999999988 54 45677999999
Q ss_pred eEEEeeecccceEeeChHHHHHhcCCCcceeeeccccC
Q 046380 178 RLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 178 ~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
.|+++. +.+....+.+....+|-.|...++..
T Consensus 104 ~lNl~~------N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 104 SLNLRF------NPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hccccc------CccccchHHHHHHHhHHHhcCCCCcc
Confidence 999998 65533344444455555555554443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.93 E-value=29 Score=19.71 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=12.9
Q ss_pred CCccEEEEcCccCCcHHHHHHHH
Q 046380 331 GNIKTLAVNGFLGLRNKSLEELI 353 (434)
Q Consensus 331 ~~Lk~L~l~~~~~~~~~~l~~l~ 353 (434)
++|++|+|+++ .+.+++...+.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHH
Confidence 35666666666 56666555443
No 89
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=44.87 E-value=6 Score=36.18 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHcCCC-hHHHHHHhhhhhhh------hhccccCCeeEEecccc
Q 046380 6 RISFLPDDLTHHIMSLLP-MKDIARTSILSKRW------MSHWLCFPVQEFDESWF 54 (434)
Q Consensus 6 ~is~LPdeiL~~I~s~L~-~~~~~r~~~vskrW------~~lw~~~~~l~~~~~~~ 54 (434)
.+++||.|++..|+.+|+ .+|+..++.|--.- +.+|+..-..+|.+..+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 568999999999999996 78999888774443 35677766677766544
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=44.81 E-value=25 Score=27.92 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=27.3
Q ss_pred ccCccEEEeec-CCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc-CCcHHHHHHHHhcCCccc
Q 046380 284 LKKLKLVRMEN-CRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL-GLRNKSLEELISACILLE 360 (434)
Q Consensus 284 ~~~L~~L~l~~-c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~-~~~~~~l~~l~~~~p~Le 360 (434)
+.+|+.+.+.. ...+..-.+ .+++|+++.+......++. ..+..+++|+++.+.+.. .+.. ..+..+++|+
T Consensus 11 ~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~--~~F~~~~~l~~i~~~~~~~~i~~----~~F~~~~~l~ 84 (129)
T PF13306_consen 11 CSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGD--NAFSNCKSLESITFPNNLKSIGD----NAFSNCTNLK 84 (129)
T ss_dssp -TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-T--TTTTT-TT-EEEEETSTT-EE-T----TTTTT-TTEC
T ss_pred CCCCCEEEECCCeeEeChhhcccccccccccccccccccce--eeeeccccccccccccccccccc----cccccccccc
Confidence 44566666553 111222222 3556666666543211111 123445556666664320 0111 1223456666
Q ss_pred eEEee
Q 046380 361 NLYLN 365 (434)
Q Consensus 361 ~L~l~ 365 (434)
.+.+.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 66653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.05 E-value=18 Score=36.89 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=49.2
Q ss_pred ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccc-eeecCCCCCCccE
Q 046380 257 SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIAS-FHFGGRGFGNIKT 335 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~~Lk~ 335 (434)
...|.+..+.++.|.+..+- .++.+....|+|.+|++++++....+ .+..--+...|++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld--------------------~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Lee 274 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLD--------------------ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEE 274 (585)
T ss_pred cCCcceeeeecccchhhchh--------------------hhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHH
Confidence 45677777777766543321 23334445777777777776322111 1122233446778
Q ss_pred EEEcCccCCc-----HHHHHHHHhcCCccceEE
Q 046380 336 LAVNGFLGLR-----NKSLEELISACILLENLY 363 (434)
Q Consensus 336 L~l~~~~~~~-----~~~l~~l~~~~p~Le~L~ 363 (434)
|.+.|+.-.+ .+.+..+.+.+|.|..|+
T Consensus 275 l~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 275 LVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred eeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 8887763222 235667777888888876
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=41.15 E-value=0.26 Score=49.87 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=80.1
Q ss_pred HHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH---HHHhccCCCCcEEEeeccc
Q 046380 195 PRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF---ESALSKFSNLETLKLLSSV 271 (434)
Q Consensus 195 l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 271 (434)
+...+...+.|+.|+++++...+ ..++.+ ...+......|++|.+..+....... ...+...+.++.++++.|.
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~-~g~~~l--~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGD-EGARLL--CEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHhcccccHhHhhcccCCCcc-HhHHHH--HhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 33445556666666666665542 110000 00000112334445444444433222 2233336666777777665
Q ss_pred cccCCCCcchh-------hccCccEEEeecCCCC----ccee--e-cCCc-ccEEEeccccCcccce---eecCCCC-CC
Q 046380 272 FGKLPSSLSSA-------ILKKLKLVRMENCRFD----GPVE--I-HSPN-LETFVYKAGHGEIASF---HFGGRGF-GN 332 (434)
Q Consensus 272 ~~~~p~~~~~~-------~~~~L~~L~l~~c~~l----~~~~--~-~~p~-L~~L~l~~~~~~~~~~---~~~~~~~-~~ 332 (434)
+.......... .-.++++|+++.|..- ..+. + ..++ +..|++..+.....++ ....... ..
T Consensus 184 l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~ 263 (478)
T KOG4308|consen 184 LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSET 263 (478)
T ss_pred cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchh
Confidence 43211101111 1335667777766321 1111 1 1222 4455555543221111 1122333 56
Q ss_pred ccEEEEcCccCCcHH---HHHHHHhcCCccceEEeecccccc
Q 046380 333 IKTLAVNGFLGLRNK---SLEELISACILLENLYLNSCAIPK 371 (434)
Q Consensus 333 Lk~L~l~~~~~~~~~---~l~~l~~~~p~Le~L~l~~~~~~~ 371 (434)
++++.++.+ .++.. .+...+..++.++.+.+..+++..
T Consensus 264 l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 264 LRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 777887777 44443 555666678888888888887743
No 93
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=39.52 E-value=36 Score=27.01 Aligned_cols=37 Identities=5% Similarity=0.035 Sum_probs=15.9
Q ss_pred cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeecc
Q 046380 170 NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAF 212 (434)
Q Consensus 170 ~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~ 212 (434)
+.++++|+.+++... +. .--...+.+|+.|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~~-----~~-~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-----LT-SIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT-SEEEESST-----TS-CE-TTTTTT-TT-EEEEETS
T ss_pred ccccccccccccccc-----cc-ccceeeeecccccccccccc
Confidence 445666777766541 10 01122345566666666643
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=34.25 E-value=23 Score=20.00 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=14.8
Q ss_pred CCCcEEEeeccccccCCC
Q 046380 260 SNLETLKLLSSVFGKLPS 277 (434)
Q Consensus 260 ~~L~~L~l~~~~~~~~p~ 277 (434)
++|+.|.+++|.+..+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468889999888888885
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=28.42 E-value=37 Score=19.08 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=12.4
Q ss_pred CCCCcEEEeeccccccC
Q 046380 259 FSNLETLKLLSSVFGKL 275 (434)
Q Consensus 259 ~~~L~~L~l~~~~~~~~ 275 (434)
+.+|+.|++++|.+..+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35788888888876554
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.78 E-value=47 Score=33.99 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=24.6
Q ss_pred ccCcccceEEEeeecccceEee---ChHHHHHhcCCCcceeeeccc
Q 046380 171 FFNPSVRRLVVRGCMALQGFEM---DAPRLNYFQCSGIRDFDEAFV 213 (434)
Q Consensus 171 ~~~~~L~~L~L~~c~~~~~~~~---~~l~~~~~~cp~L~~L~l~~~ 213 (434)
.++|.+..++|++ +++ |.+..+....|+|+.|+|+++
T Consensus 215 ~n~p~i~sl~lsn------NrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSN------NRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeeccc------chhhchhhhhHHHHhcchhheeecccc
Confidence 3566667777766 554 366666667777777777776
No 97
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.31 E-value=99 Score=19.60 Aligned_cols=10 Identities=30% Similarity=0.311 Sum_probs=5.2
Q ss_pred ccccceeEec
Q 046380 378 SLTLKTLVVH 387 (434)
Q Consensus 378 ~~~L~~L~l~ 387 (434)
..++++|.+.
T Consensus 33 P~sl~~L~fg 42 (44)
T PF05725_consen 33 PNSLKSLSFG 42 (44)
T ss_pred CCCceEEEee
Confidence 4455555554
Done!