Query 046380
Match_columns 434
No_of_seqs 175 out of 2169
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 20:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 9.3E-25 3.2E-29 226.1 15.5 383 3-410 2-516 (594)
2 3ogk_B Coronatine-insensitive 99.9 2.1E-24 7.2E-29 223.4 12.1 375 3-410 5-523 (592)
3 2ast_B S-phase kinase-associat 99.9 3.7E-24 1.3E-28 205.7 9.2 288 4-369 6-305 (336)
4 4fcg_A Uncharacterized protein 99.6 1.9E-14 6.4E-19 137.7 13.7 215 103-369 74-289 (328)
5 3ogk_B Coronatine-insensitive 99.6 5E-15 1.7E-19 152.9 10.3 207 169-390 288-524 (592)
6 4fmz_A Internalin; leucine ric 99.6 2E-14 6.7E-19 138.4 13.3 231 111-390 66-298 (347)
7 4fmz_A Internalin; leucine ric 99.6 2.4E-14 8.2E-19 137.8 13.4 232 110-390 87-322 (347)
8 2ast_B S-phase kinase-associat 99.5 1E-15 3.4E-20 146.7 3.1 253 101-390 37-304 (336)
9 2p1m_B Transport inhibitor res 99.5 7.9E-15 2.7E-19 151.4 8.5 207 170-392 285-519 (594)
10 1o6v_A Internalin A; bacterial 99.5 1.8E-13 6.1E-18 137.3 14.7 126 257-392 240-366 (466)
11 3o6n_A APL1; leucine-rich repe 99.5 5.1E-14 1.8E-18 137.8 9.7 256 111-409 69-348 (390)
12 1o6v_A Internalin A; bacterial 99.5 3.4E-13 1.2E-17 135.2 15.0 241 111-392 68-322 (466)
13 2z80_A TOLL-like receptor 2, v 99.5 3E-13 1E-17 130.6 14.0 247 110-392 51-314 (353)
14 4fcg_A Uncharacterized protein 99.4 1E-13 3.6E-18 132.5 8.4 202 145-396 83-294 (328)
15 3oja_B Anopheles plasmodium-re 99.4 1.2E-13 4.1E-18 143.0 8.7 216 111-369 75-313 (597)
16 1ogq_A PGIP-2, polygalacturona 99.4 9.5E-14 3.3E-18 131.8 7.0 245 111-392 50-304 (313)
17 2id5_A Lingo-1, leucine rich r 99.4 1.6E-13 5.6E-18 137.9 8.8 243 111-390 56-331 (477)
18 3bz5_A Internalin-J, INLJ; leu 99.4 4.8E-13 1.6E-17 133.7 10.3 203 111-370 42-246 (457)
19 2z63_A TOLL-like receptor 4, v 99.4 2.6E-13 8.8E-18 139.3 8.4 242 111-390 282-529 (570)
20 2id5_A Lingo-1, leucine rich r 99.4 5.1E-13 1.7E-17 134.2 10.3 223 111-369 32-260 (477)
21 2z66_A Variable lymphocyte rec 99.4 3E-13 1E-17 127.8 7.6 230 131-391 19-260 (306)
22 1z7x_W Ribonuclease inhibitor; 99.4 2.3E-13 7.9E-18 136.0 6.2 231 145-390 87-352 (461)
23 3vq2_A TLR4, TOLL-like recepto 99.4 4.2E-13 1.4E-17 138.9 7.9 243 111-390 285-532 (606)
24 3bz5_A Internalin-J, INLJ; leu 99.4 1.2E-12 4E-17 130.9 10.6 229 110-395 63-302 (457)
25 4eco_A Uncharacterized protein 99.4 9.1E-13 3.1E-17 137.3 10.1 149 111-295 206-387 (636)
26 3vq2_A TLR4, TOLL-like recepto 99.4 7.4E-13 2.5E-17 137.1 9.3 241 111-392 307-558 (606)
27 3v47_A TOLL-like receptor 5B a 99.4 4.3E-13 1.5E-17 133.8 7.1 110 111-247 54-166 (455)
28 3o53_A Protein LRIM1, AGAP0063 99.4 1.9E-13 6.6E-18 129.9 3.6 213 111-369 34-249 (317)
29 4eco_A Uncharacterized protein 99.4 1.8E-13 6E-18 142.7 3.4 150 235-392 305-470 (636)
30 1xku_A Decorin; proteoglycan, 99.4 1E-12 3.5E-17 125.5 8.4 216 145-390 54-274 (330)
31 2ca6_A RAN GTPase-activating p 99.4 3.3E-13 1.1E-17 131.9 4.8 242 111-371 32-317 (386)
32 4ecn_A Leucine-rich repeat pro 99.4 2.2E-12 7.6E-17 137.8 11.5 230 111-369 448-709 (876)
33 3t6q_A CD180 antigen; protein- 99.3 5.9E-13 2E-17 137.8 6.8 82 112-215 255-337 (606)
34 3v47_A TOLL-like receptor 5B a 99.3 1.3E-12 4.4E-17 130.3 8.8 85 111-217 79-168 (455)
35 1z7x_W Ribonuclease inhibitor; 99.3 1.2E-13 4.2E-18 138.0 1.2 278 112-409 86-407 (461)
36 3t6q_A CD180 antigen; protein- 99.3 5.6E-13 1.9E-17 138.0 6.2 15 355-369 498-512 (606)
37 3oja_A Leucine-rich immune mol 99.3 5.3E-13 1.8E-17 134.5 5.1 213 112-369 35-249 (487)
38 4ecn_A Leucine-rich repeat pro 99.3 1.3E-12 4.6E-17 139.5 8.4 255 111-393 548-841 (876)
39 3zyj_A Leucine-rich repeat-con 99.3 5.9E-13 2E-17 132.5 5.1 222 111-369 64-291 (440)
40 3zyi_A Leucine-rich repeat-con 99.3 5.5E-13 1.9E-17 133.2 5.0 195 145-368 101-301 (452)
41 2z7x_B TOLL-like receptor 1, v 99.3 4.1E-11 1.4E-15 121.6 18.9 254 111-391 69-411 (520)
42 3rgz_A Protein brassinosteroid 99.3 7.7E-13 2.6E-17 140.9 6.0 253 111-391 100-380 (768)
43 2z81_A CD282 antigen, TOLL-lik 99.3 9.5E-12 3.2E-16 127.1 13.9 69 198-271 191-262 (549)
44 3zyj_A Leucine-rich repeat-con 99.3 2.1E-12 7.3E-17 128.4 8.4 231 130-391 54-291 (440)
45 3zyi_A Leucine-rich repeat-con 99.3 2E-12 7E-17 129.0 7.9 231 131-391 66-302 (452)
46 1xku_A Decorin; proteoglycan, 99.3 4E-12 1.4E-16 121.4 9.3 242 109-392 50-306 (330)
47 3rgz_A Protein brassinosteroid 99.3 2.3E-12 7.8E-17 137.2 7.9 173 111-316 368-548 (768)
48 2z81_A CD282 antigen, TOLL-lik 99.3 1.3E-11 4.3E-16 126.2 13.2 134 111-274 26-162 (549)
49 3g06_A SSPH2 (leucine-rich rep 99.3 1.5E-11 5E-16 127.1 13.6 151 234-409 140-293 (622)
50 1h6u_A Internalin H; cell adhe 99.3 1.3E-11 4.4E-16 116.8 11.3 125 234-371 106-231 (308)
51 2ca6_A RAN GTPase-activating p 99.3 2.6E-12 8.9E-17 125.5 6.3 251 132-392 22-316 (386)
52 2ft3_A Biglycan; proteoglycan, 99.3 1.7E-12 5.9E-17 124.1 4.9 100 261-369 173-276 (332)
53 2z66_A Variable lymphocyte rec 99.3 4.5E-13 1.5E-17 126.6 0.3 226 111-369 28-260 (306)
54 1ogq_A PGIP-2, polygalacturona 99.3 1.7E-12 5.9E-17 123.1 4.3 222 111-369 76-303 (313)
55 3j0a_A TOLL-like receptor 5; m 99.3 2.2E-11 7.4E-16 131.0 13.3 60 306-369 266-326 (844)
56 3j0a_A TOLL-like receptor 5; m 99.3 1.1E-11 3.7E-16 133.4 10.6 243 111-391 266-538 (844)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.3E-11 7.9E-16 124.8 12.6 64 304-369 351-415 (562)
58 3o6n_A APL1; leucine-rich repe 99.3 4.3E-12 1.5E-16 124.1 6.5 247 111-392 93-352 (390)
59 2z7x_B TOLL-like receptor 1, v 99.2 8.1E-12 2.8E-16 126.8 8.1 65 304-369 188-259 (520)
60 3g06_A SSPH2 (leucine-rich rep 99.2 4.5E-11 1.5E-15 123.5 13.4 138 233-392 159-297 (622)
61 1ozn_A Reticulon 4 receptor; N 99.2 9.9E-12 3.4E-16 116.1 7.6 208 131-369 23-237 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.2 3.8E-12 1.3E-16 121.0 4.4 214 111-369 58-274 (317)
63 3oja_B Anopheles plasmodium-re 99.2 1.2E-11 4.2E-16 127.8 7.5 247 111-392 99-358 (597)
64 1ozn_A Reticulon 4 receptor; N 99.2 2.4E-11 8.1E-16 113.5 8.7 199 110-342 31-236 (285)
65 1h6u_A Internalin H; cell adhe 99.2 5.8E-11 2E-15 112.3 10.7 185 111-341 41-227 (308)
66 2ft3_A Biglycan; proteoglycan, 99.2 6E-12 2E-16 120.3 3.8 237 112-392 34-277 (332)
67 2z80_A TOLL-like receptor 2, v 99.2 6.6E-11 2.3E-15 114.0 10.5 185 131-369 43-234 (353)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 8.5E-11 2.9E-15 120.5 11.9 127 111-272 52-181 (562)
69 2z63_A TOLL-like receptor 4, v 99.2 2.4E-11 8.1E-16 124.6 7.5 218 112-369 305-530 (570)
70 1jl5_A Outer protein YOPM; leu 99.1 2.2E-10 7.4E-15 114.3 12.3 164 199-391 191-369 (454)
71 1jl5_A Outer protein YOPM; leu 99.1 1.4E-10 4.7E-15 115.7 10.8 116 174-316 131-247 (454)
72 1wwl_A Monocyte differentiatio 99.1 5.2E-11 1.8E-15 112.7 7.4 198 141-369 94-308 (312)
73 1wwl_A Monocyte differentiatio 99.1 1.6E-10 5.3E-15 109.5 10.3 202 110-341 94-306 (312)
74 2xwt_C Thyrotropin receptor; s 99.1 2E-10 6.8E-15 104.3 10.4 190 145-368 33-237 (239)
75 4glp_A Monocyte differentiatio 99.1 1.4E-10 4.9E-15 109.6 9.1 222 97-369 78-306 (310)
76 2xwt_C Thyrotropin receptor; s 99.1 1.4E-10 4.9E-15 105.2 7.9 197 173-392 30-239 (239)
77 1ziw_A TOLL-like receptor 3; i 99.1 1.5E-10 5.1E-15 121.4 8.8 84 304-390 478-571 (680)
78 2z62_A TOLL-like receptor 4, v 99.1 1.4E-10 4.9E-15 107.6 7.1 198 145-369 30-236 (276)
79 2z62_A TOLL-like receptor 4, v 99.1 6.7E-11 2.3E-15 109.8 4.8 197 111-341 28-234 (276)
80 3goz_A Leucine-rich repeat-con 99.1 7.9E-11 2.7E-15 113.9 5.3 234 111-369 22-296 (362)
81 3oja_A Leucine-rich immune mol 99.1 7.4E-11 2.5E-15 118.8 5.0 211 111-366 58-271 (487)
82 3goz_A Leucine-rich repeat-con 99.0 2.9E-11 9.9E-16 117.0 1.4 236 143-392 22-297 (362)
83 1ziw_A TOLL-like receptor 3; i 99.0 2.5E-10 8.5E-15 119.8 8.2 248 111-392 353-622 (680)
84 2o6q_A Variable lymphocyte rec 99.0 3.6E-10 1.2E-14 104.6 8.3 182 131-341 28-215 (270)
85 3rfs_A Internalin B, repeat mo 99.0 2.2E-10 7.6E-15 106.2 6.3 102 256-369 129-234 (272)
86 1h6t_A Internalin B; cell adhe 99.0 9.2E-10 3.1E-14 103.1 9.4 39 327-369 174-212 (291)
87 1p9a_G Platelet glycoprotein I 99.0 3.3E-10 1.1E-14 106.1 6.2 193 111-341 10-205 (290)
88 4glp_A Monocyte differentiatio 99.0 1.9E-10 6.4E-15 108.8 4.2 203 142-392 91-307 (310)
89 1h6t_A Internalin B; cell adhe 99.0 7.4E-10 2.5E-14 103.7 7.9 171 170-392 42-213 (291)
90 3rfs_A Internalin B, repeat mo 99.0 2.2E-10 7.5E-15 106.2 3.4 185 111-339 41-230 (272)
91 1p9a_G Platelet glycoprotein I 99.0 4.9E-10 1.7E-14 104.9 5.7 191 145-369 12-207 (290)
92 1m9s_A Internalin B; cell inva 98.9 9.3E-10 3.2E-14 113.4 8.1 54 145-215 45-99 (605)
93 4ezg_A Putative uncharacterize 98.9 2.7E-09 9.3E-14 93.8 9.9 38 255-295 131-169 (197)
94 1m9s_A Internalin B; cell inva 98.9 1.4E-09 4.8E-14 112.0 8.0 173 169-371 38-211 (605)
95 2o6q_A Variable lymphocyte rec 98.9 1.7E-09 5.9E-14 100.0 7.7 176 111-318 37-217 (270)
96 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.3E-09 4.4E-14 73.9 4.0 39 3-41 5-43 (53)
97 4g8a_A TOLL-like receptor 4; l 98.8 1.6E-08 5.5E-13 104.6 11.4 156 231-391 416-579 (635)
98 3cvr_A Invasion plasmid antige 98.8 1.4E-08 4.9E-13 103.5 10.5 182 109-347 57-245 (571)
99 2ell_A Acidic leucine-rich nuc 98.8 7.9E-09 2.7E-13 88.2 6.0 135 111-276 24-163 (168)
100 4ay9_X Follicle-stimulating ho 98.7 1.1E-08 3.9E-13 98.2 7.1 65 131-212 21-88 (350)
101 3m19_A Variable lymphocyte rec 98.7 7.3E-09 2.5E-13 94.6 5.4 159 131-342 26-190 (251)
102 3m19_A Variable lymphocyte rec 98.7 1.1E-08 3.7E-13 93.5 6.0 171 145-369 16-191 (251)
103 1xeu_A Internalin C; cellular 98.7 1.9E-08 6.5E-13 92.6 7.6 139 145-317 43-183 (263)
104 4ezg_A Putative uncharacterize 98.7 7.9E-08 2.7E-12 84.3 10.7 127 233-369 42-171 (197)
105 2ra8_A Uncharacterized protein 98.7 3.5E-08 1.2E-12 95.0 8.6 168 170-370 135-320 (362)
106 1xeu_A Internalin C; cellular 98.7 2.4E-08 8.2E-13 92.0 7.1 104 256-370 81-185 (263)
107 2je0_A Acidic leucine-rich nuc 98.6 3.2E-08 1.1E-12 82.5 6.2 113 133-293 33-148 (149)
108 3cvr_A Invasion plasmid antige 98.6 3.4E-08 1.1E-12 100.8 7.2 175 145-369 61-242 (571)
109 4ay9_X Follicle-stimulating ho 98.6 2.7E-08 9.2E-13 95.6 6.2 218 111-366 30-255 (350)
110 4g8a_A TOLL-like receptor 4; l 98.6 5.8E-08 2E-12 100.4 8.4 61 234-295 123-183 (635)
111 2ell_A Acidic leucine-rich nuc 98.6 1.5E-08 5.1E-13 86.4 3.3 130 145-295 26-157 (168)
112 1dce_A Protein (RAB geranylger 98.5 9.9E-10 3.4E-14 112.4 -9.6 184 171-369 346-545 (567)
113 2o6s_A Variable lymphocyte rec 98.5 5.2E-08 1.8E-12 86.1 2.5 155 131-316 19-175 (208)
114 2je0_A Acidic leucine-rich nuc 98.4 6.3E-08 2.2E-12 80.7 1.1 13 203-215 17-29 (149)
115 3e6j_A Variable lymphocyte rec 98.4 3.1E-07 1.1E-11 82.6 5.6 135 131-317 31-170 (229)
116 1a9n_A U2A', U2A'; complex (nu 98.4 1.5E-07 5.2E-12 80.8 3.4 107 145-276 21-129 (176)
117 2xot_A Amphoterin-induced prot 98.3 1.6E-07 5.3E-12 90.6 2.8 121 131-277 30-153 (361)
118 2v9t_B SLIT homolog 2 protein 98.3 4.4E-07 1.5E-11 81.0 5.5 69 131-216 23-93 (220)
119 3un9_A NLR family member X1; l 98.3 2.3E-07 7.8E-12 89.8 3.2 167 173-371 71-253 (372)
120 3e4g_A ATP synthase subunit S, 98.3 9.3E-07 3.2E-11 75.3 6.5 89 306-395 61-155 (176)
121 1a9n_A U2A', U2A'; complex (nu 98.3 6E-07 2.1E-11 77.0 5.3 91 256-369 60-152 (176)
122 2v70_A SLIT-2, SLIT homolog 2 98.3 3.4E-07 1.2E-11 81.7 3.7 68 131-215 23-93 (220)
123 1ds9_A Outer arm dynein; leuci 98.3 1.3E-07 4.5E-12 82.9 0.5 112 137-274 43-154 (198)
124 3e6j_A Variable lymphocyte rec 98.2 4.9E-07 1.7E-11 81.2 3.8 129 110-295 39-169 (229)
125 2v9t_B SLIT homolog 2 protein 98.2 5E-07 1.7E-11 80.7 3.8 129 111-294 32-161 (220)
126 1ds9_A Outer arm dynein; leuci 98.2 3E-07 1E-11 80.6 1.5 102 259-363 69-180 (198)
127 2o6s_A Variable lymphocyte rec 98.2 7.8E-07 2.7E-11 78.5 4.0 132 111-273 28-161 (208)
128 2xot_A Amphoterin-induced prot 98.2 5.7E-07 2E-11 86.6 3.3 151 111-294 39-198 (361)
129 3e4g_A ATP synthase subunit S, 98.2 2.1E-06 7.3E-11 73.1 6.3 73 131-216 50-127 (176)
130 2v70_A SLIT-2, SLIT homolog 2 98.1 1.4E-06 4.9E-11 77.6 3.9 84 111-216 32-118 (220)
131 3un9_A NLR family member X1; l 98.1 8.3E-07 2.8E-11 85.8 2.4 169 202-392 71-252 (372)
132 2ra8_A Uncharacterized protein 98.1 3.8E-06 1.3E-10 80.7 6.9 132 255-391 167-319 (362)
133 1dce_A Protein (RAB geranylger 98.1 1.9E-06 6.4E-11 88.1 4.3 58 233-295 484-543 (567)
134 4b8c_D Glucose-repressible alc 98.1 6.4E-07 2.2E-11 94.4 0.6 64 256-345 266-329 (727)
135 2e31_A FBS1, F-box only protei 98.0 2.3E-06 7.9E-11 78.8 3.5 37 5-41 49-86 (297)
136 3sb4_A Hypothetical leucine ri 98.0 1.3E-05 4.5E-10 75.9 8.7 59 234-294 201-259 (329)
137 3l2o_B F-box only protein 4; s 97.9 1.9E-06 6.4E-11 78.6 1.4 34 6-39 4-37 (312)
138 1w8a_A SLIT protein; signaling 97.9 3.1E-06 1.1E-10 73.7 1.7 68 131-215 20-90 (192)
139 3sb4_A Hypothetical leucine ri 97.8 4.4E-05 1.5E-09 72.3 8.7 38 330-369 201-238 (329)
140 3v7d_B Cell division control p 97.8 4.4E-06 1.5E-10 82.6 1.5 40 3-42 11-50 (464)
141 2wfh_A SLIT homolog 2 protein 97.8 6.2E-06 2.1E-10 71.9 2.2 113 131-294 22-135 (193)
142 2o6r_A Variable lymphocyte rec 97.8 1.5E-05 5.1E-10 68.2 4.4 57 145-215 30-88 (177)
143 4b8c_D Glucose-repressible alc 97.8 4.7E-06 1.6E-10 87.8 1.0 59 233-295 268-326 (727)
144 2wfh_A SLIT homolog 2 protein 97.7 1.9E-05 6.6E-10 68.7 4.5 105 173-317 30-137 (193)
145 2o6r_A Variable lymphocyte rec 97.7 1.3E-05 4.3E-10 68.6 3.2 109 172-296 26-135 (177)
146 2ovr_B FBW7, F-BOX/WD repeat p 97.6 2.9E-05 9.8E-10 76.4 3.8 38 3-40 15-52 (445)
147 1w8a_A SLIT protein; signaling 97.6 2E-05 7E-10 68.4 2.4 123 145-317 10-137 (192)
148 1p22_A F-BOX/WD-repeat protein 97.6 1.6E-05 5.6E-10 78.0 1.5 37 3-39 7-47 (435)
149 1io0_A Tropomodulin; LRR prote 97.5 4E-05 1.4E-09 66.2 3.1 42 327-369 117-163 (185)
150 4fdw_A Leucine rich hypothetic 97.5 0.00015 5.3E-09 70.6 7.5 224 131-389 124-355 (401)
151 1io0_A Tropomodulin; LRR prote 97.3 2.9E-05 9.9E-10 67.1 -0.2 115 145-272 38-163 (185)
152 2r9u_A Variable lymphocyte rec 97.2 0.00033 1.1E-08 59.7 5.3 17 257-273 102-118 (174)
153 4fdw_A Leucine rich hypothetic 97.2 0.00099 3.4E-08 64.8 9.3 199 131-369 146-357 (401)
154 3g39_A Variable lymphocyte rec 97.1 0.0003 1E-08 59.6 4.3 68 131-215 21-90 (170)
155 2r9u_A Variable lymphocyte rec 96.8 0.00066 2.3E-08 57.7 3.5 93 131-248 24-118 (174)
156 3g39_A Variable lymphocyte rec 96.8 0.00069 2.3E-08 57.4 3.5 83 111-215 30-114 (170)
157 3rw6_A Nuclear RNA export fact 95.9 0.012 4E-07 53.6 6.2 84 257-363 167-257 (267)
158 2ifg_A High affinity nerve gro 95.8 0.0045 1.5E-07 58.6 3.2 69 131-215 21-92 (347)
159 2ifg_A High affinity nerve gro 95.8 0.0038 1.3E-07 59.1 2.7 82 111-215 31-115 (347)
160 3rw6_A Nuclear RNA export fact 95.0 0.0084 2.9E-07 54.5 2.2 86 199-291 166-257 (267)
161 4fs7_A Uncharacterized protein 94.9 0.02 6.9E-07 55.2 4.7 65 133-214 152-219 (394)
162 4gt6_A Cell surface protein; l 94.5 0.043 1.5E-06 52.8 5.7 32 112-153 65-97 (394)
163 4fs7_A Uncharacterized protein 94.3 0.047 1.6E-06 52.6 5.7 39 169-213 157-195 (394)
164 4gt6_A Cell surface protein; l 92.5 0.71 2.4E-05 44.1 10.6 105 256-368 261-368 (394)
165 1pgv_A TMD-1, tropomodulin TMD 85.4 0.83 2.9E-05 39.1 4.5 35 331-366 98-135 (197)
166 1pgv_A TMD-1, tropomodulin TMD 83.2 0.47 1.6E-05 40.7 2.0 21 195-215 90-110 (197)
167 4h09_A Hypothetical leucine ri 64.6 3.2 0.00011 39.1 2.6 128 198-340 212-342 (379)
168 3rfe_A Platelet glycoprotein I 59.3 4.2 0.00014 32.0 2.0 31 145-183 33-64 (130)
169 3rfe_A Platelet glycoprotein I 54.2 7.8 0.00027 30.4 2.8 39 171-215 27-67 (130)
170 4h09_A Hypothetical leucine ri 39.2 18 0.00063 33.7 3.3 109 133-268 230-341 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.3e-25 Score=226.06 Aligned_cols=383 Identities=14% Similarity=0.103 Sum_probs=195.3
Q ss_pred CCCCCCCCCHHHHHHHHcCCC-hHHHHHHhhhhhhhhhccc-cCCeeEEecccccC------------------------
Q 046380 3 AIDRISFLPDDLTHHIMSLLP-MKDIARTSILSKRWMSHWL-CFPVQEFDESWFKG------------------------ 56 (434)
Q Consensus 3 ~~D~is~LPdeiL~~I~s~L~-~~~~~r~~~vskrW~~lw~-~~~~l~~~~~~~~~------------------------ 56 (434)
..|+++.|||||+.+||+||+ .+|++++++|||||+++.. ....+.+.......
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 359999999999999999999 9999999999999997621 11223222110000
Q ss_pred ---CcccchhhHHHHHHHHHhccCCCcccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccc
Q 046380 57 ---RRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYA 133 (434)
Q Consensus 57 ---~~~~~~~~~~~~v~~~l~~~~~~~l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 133 (434)
........+...+..+.... +.++.+. +.... .....+...... .+++++|++..+. ......
T Consensus 82 ~~l~~~~~~~~~~~~l~~l~~~~--~~L~~L~---L~~~~-~~~~~~~~l~~~---~~~L~~L~L~~~~-----~~~~~~ 147 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAMSSSY--TWLEEIR---LKRMV-VTDDCLELIAKS---FKNFKVLVLSSCE-----GFSTDG 147 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHC--TTCCEEE---EESCB-CCHHHHHHHHHH---CTTCCEEEEESCE-----EEEHHH
T ss_pred cccccccccchhhHHHHHHHHhC--CCCCeEE---eeCcE-EcHHHHHHHHHh---CCCCcEEeCCCcC-----CCCHHH
Confidence 00000000111222222221 2345555 43221 112222211111 2577777776553 011112
Q ss_pred cccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeec
Q 046380 134 LPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEA 211 (434)
Q Consensus 134 lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~ 211 (434)
++.....+.+ |++|+|++|.+.. .....++.....+++|++|++++|. ..+ + .+..+..+||+|++|++.
T Consensus 148 l~~~~~~~~~-L~~L~L~~~~i~~---~~~~~l~~~~~~~~~L~~L~l~~~~----~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 148 LAAIAATCRN-LKELDLRESDVDD---VSGHWLSHFPDTYTSLVSLNISCLA----SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp HHHHHHHCTT-CCEEECTTCEEEC---CCGGGGGGSCTTCCCCCEEECTTCC----SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHhCCC-CCEEeCcCCccCC---cchHHHHHHhhcCCcCcEEEecccC----CcCCHHHHHHHHHhCCCCcEEecC
Confidence 3333334555 8888888777611 0111122334467788888888742 013 2 667777778888888888
Q ss_pred cccCCCC-----------c------------------------ccccccc-----------cceeeccCCceeEEEEEeE
Q 046380 212 FVYRPDH-----------F------------------------CCRFLEF-----------KVANENSMSSLETLVFSFM 245 (434)
Q Consensus 212 ~~~~~~~-----------~------------------------~~~~l~~-----------~~~~~~~~p~L~~L~l~~~ 245 (434)
+|..... . .|+.+.. +......+++|++|+++++
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 7721100 0 0111100 1111114678888888777
Q ss_pred EeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec--------CCCCcceee--------------
Q 046380 246 VLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN--------CRFDGPVEI-------------- 303 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~--------c~~l~~~~~-------------- 303 (434)
..++.....++..+++|+.|++.+| +...........+++|++|++.. |..+....+
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 6666656666678888888888877 22111001123466777777632 222221111
Q ss_pred ----------------cCCcccEEEec--c----ccCc----ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCC
Q 046380 304 ----------------HSPNLETFVYK--A----GHGE----IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACI 357 (434)
Q Consensus 304 ----------------~~p~L~~L~l~--~----~~~~----~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p 357 (434)
.+|+|+.|++. + +..+ ..++......+++|++|++.+ .+++..+..+.+.++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhch
Confidence 24555555554 1 1111 011111133456777777755 466777777776678
Q ss_pred ccceEEeecccccccccc---ccccccceeEeccCCccce----eeEecCceEEEEEeee
Q 046380 358 LLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDHLHF----AEIQAPQLLYFQYVGQ 410 (434)
Q Consensus 358 ~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~----~~i~~~~l~~~~~~~~ 410 (434)
+|+.|++++|.+....+. ...++|+.|++++|+.-+. +.-..++|..+...++
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 888888888776333222 2256888888888876321 1112467777777654
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2.1e-24 Score=223.39 Aligned_cols=375 Identities=15% Similarity=0.104 Sum_probs=202.9
Q ss_pred CCCCCC----CCCHHHHHHHHcCC-ChHHHHHHhhhhhhhhhccccCC-eeEEecccccCCcccchhhHHHHHHHHHhcc
Q 046380 3 AIDRIS----FLPDDLTHHIMSLL-PMKDIARTSILSKRWMSHWLCFP-VQEFDESWFKGRRESCGRDFHEYLRRSLARR 76 (434)
Q Consensus 3 ~~D~is----~LPdeiL~~I~s~L-~~~~~~r~~~vskrW~~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 76 (434)
++||++ .||||++.+||+|| +.+|++++++|||||++++...+ .+.+.. .+. ..+..++.+.
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~-----------~~~~~~~~~~ 72 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYT-----------ATPDRLSRRF 72 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGG-----------SCHHHHHHHC
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccc-----------cChHHHHHhC
Confidence 347776 89999999999999 89999999999999998743322 122111 010 0111122111
Q ss_pred CC-------------------------------------CcccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEE
Q 046380 77 DF-------------------------------------DNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLH 119 (434)
Q Consensus 77 ~~-------------------------------------~~l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~ 119 (434)
+. +.++.|. +... .-.+....|+... ...++++|++.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~---L~~~--~i~~~~~~~l~~~-~~~~L~~L~L~ 146 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH---FRRM--IVSDLDLDRLAKA-RADDLETLKLD 146 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE---EESC--BCCHHHHHHHHHH-HGGGCCEEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE---eecc--EecHHHHHHHHHh-ccccCcEEECc
Confidence 11 2234443 3321 1112223334332 22346666665
Q ss_pred eecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEe-e-C-hHH
Q 046380 120 VRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE-M-D-APR 196 (434)
Q Consensus 120 ~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~-~-~-~l~ 196 (434)
.+. ......++.....+.+ |++|+|++|.+... ....++.....+++|++|+++++. +. + + .+.
T Consensus 147 ~~~-----~~~~~~l~~~~~~~~~-L~~L~L~~~~~~~~---~~~~l~~~~~~~~~L~~L~L~~n~----~~~~~~~~l~ 213 (592)
T 3ogk_B 147 KCS-----GFTTDGLLSIVTHCRK-IKTLLMEESSFSEK---DGKWLHELAQHNTSLEVLNFYMTE----FAKISPKDLE 213 (592)
T ss_dssp SCE-----EEEHHHHHHHHHHCTT-CSEEECTTCEEECC---CSHHHHHHHHHCCCCCEEECTTCC----CSSCCHHHHH
T ss_pred CCC-----CcCHHHHHHHHhhCCC-CCEEECccccccCc---chhHHHHHHhcCCCccEEEeeccC----CCccCHHHHH
Confidence 543 1111222222224455 77777777765110 000011233466777777776521 11 1 1 566
Q ss_pred HHHhcCCCcceeeeccccCCCCc-------------------------------ccccc----------cccceeeccCC
Q 046380 197 LNYFQCSGIRDFDEAFVYRPDHF-------------------------------CCRFL----------EFKVANENSMS 235 (434)
Q Consensus 197 ~~~~~cp~L~~L~l~~~~~~~~~-------------------------------~~~~l----------~~~~~~~~~~p 235 (434)
.++.+||+|++|++.+|...... .++.+ .........++
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence 66777888888888776532100 01100 11122233567
Q ss_pred ceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec----------CCCCcceee--
Q 046380 236 SLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN----------CRFDGPVEI-- 303 (434)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~----------c~~l~~~~~-- 303 (434)
+|++|+++++..++......+..+++|+.|++..+ +...........+++|++|++.+ |..+....+
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 88888888777666666556788888888888733 22111001123466777777774 544432211
Q ss_pred ---cCCcccEEEeccccCccc---------------------------------ceeecCCCCCCccEEEEcCcc-CCcH
Q 046380 304 ---HSPNLETFVYKAGHGEIA---------------------------------SFHFGGRGFGNIKTLAVNGFL-GLRN 346 (434)
Q Consensus 304 ---~~p~L~~L~l~~~~~~~~---------------------------------~~~~~~~~~~~Lk~L~l~~~~-~~~~ 346 (434)
.+++|++|.+.++..+.. ++......+++|++|.++.|. .+++
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 255555555533322110 011112347788888887653 2678
Q ss_pred HHHHHHHhcCCccceEEeecccccccccc---ccccccceeEeccCCcccee-----eEecCceEEEEEeee
Q 046380 347 KSLEELISACILLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDHLHFA-----EIQAPQLLYFQYVGQ 410 (434)
Q Consensus 347 ~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~-----~i~~~~l~~~~~~~~ 410 (434)
..+..+...+|+|+.|+|++|.+....+. ....+|++|++++|. +... .-..+.+..+...++
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 88888888899999999998887432222 235789999999998 4321 123577888877663
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=3.7e-24 Score=205.75 Aligned_cols=288 Identities=16% Similarity=0.099 Sum_probs=164.3
Q ss_pred CCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhccccCCeeEEecccccCCcccchhhHHHHHHHHHhccCCCcccc
Q 046380 4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQE 83 (434)
Q Consensus 4 ~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~~ 83 (434)
...+++||||++.+||+||+.+|+++++.|||+|+++... |. .+++
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~---------------------------------~~~~ 51 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES---------------------------------LWQT 51 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST---------------------------------TSSE
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch---------------------------------hhee
Confidence 4568999999999999999999999999999999987521 10 0122
Q ss_pred eEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccc
Q 046380 84 LKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTV 163 (434)
Q Consensus 84 l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 163 (434)
+. +.... .. ...+... ..++++.+++.... ....+..++.+.+ |++|++++|.+..
T Consensus 52 l~---l~~~~-~~----~~~~~~~-~~~~l~~L~l~~n~--------l~~~~~~~~~~~~-L~~L~L~~~~l~~------ 107 (336)
T 2ast_B 52 LD---LTGKN-LH----PDVTGRL-LSQGVIAFRCPRSF--------MDQPLAEHFSPFR-VQHMDLSNSVIEV------ 107 (336)
T ss_dssp EE---CTTCB-CC----HHHHHHH-HHTTCSEEECTTCE--------ECSCCCSCCCCBC-CCEEECTTCEECH------
T ss_pred ec---ccccc-CC----HHHHHhh-hhccceEEEcCCcc--------ccccchhhccCCC-CCEEEccCCCcCH------
Confidence 22 11100 01 1122222 33567777665433 2233334555566 8888888887732
Q ss_pred cccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEE
Q 046380 164 MGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVF 242 (434)
Q Consensus 164 ~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l 242 (434)
.+++.....+++|++|++++ +.+ +.....++.+++|++|++++|...... ........+|+|++|++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~------~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~------~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEG------LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF------ALQTLLSSCSRLDELNL 175 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTT------CBCCHHHHHHHTTCTTCSEEECTTCBSCCHH------HHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHhhCCCCCEEeCcC------cccCHHHHHHHhcCCCCCEEECCCCCCCCHH------HHHHHHhcCCCCCEEcC
Confidence 11234566788888888888 555 344555677888888888888432110 12222345677777777
Q ss_pred EeE-EeCchhHHHHhccCC-CCcEEEeeccc--cc--cCCCCcchhhccCccEEEeecCCCCcc---eee-cCCcccEEE
Q 046380 243 SFM-VLNDRTFESALSKFS-NLETLKLLSSV--FG--KLPSSLSSAILKKLKLVRMENCRFDGP---VEI-HSPNLETFV 312 (434)
Q Consensus 243 ~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~--~~--~~p~~~~~~~~~~L~~L~l~~c~~l~~---~~~-~~p~L~~L~ 312 (434)
+++ ..++......+..++ +|++|++++|. ++ .+|. ....+++|++|++++|..+.. ..+ .+++|++|+
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST--LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH--HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH--HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 776 555555555666777 77777777763 22 2221 123466666666666653321 112 456666666
Q ss_pred ecccc-CcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 313 YKAGH-GEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 313 l~~~~-~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
++++. ....++ .....+++|++|+++++ ++++.+..+.+.+|.|+ ++++.+
T Consensus 254 l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n~l 305 (336)
T 2ast_B 254 LSRCYDIIPETL-LELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCSHF 305 (336)
T ss_dssp CTTCTTCCGGGG-GGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCCCS
T ss_pred CCCCCCCCHHHH-HHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE---EecccC
Confidence 65543 111111 12334556666666655 45544544443333333 444444
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.57 E-value=1.9e-14 Score=137.67 Aligned_cols=215 Identities=15% Similarity=0.126 Sum_probs=121.8
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEe
Q 046380 103 FVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVR 182 (434)
Q Consensus 103 wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 182 (434)
.+... ...++++|++..+. ...+|..++.... |++|+|++|.+.. +|.....+++|++|+|+
T Consensus 74 ~l~~~-~~~~l~~L~L~~n~--------l~~lp~~l~~l~~-L~~L~L~~n~l~~--------lp~~~~~l~~L~~L~Ls 135 (328)
T 4fcg_A 74 LLEDA-TQPGRVALELRSVP--------LPQFPDQAFRLSH-LQHMTIDAAGLME--------LPDTMQQFAGLETLTLA 135 (328)
T ss_dssp HHHHH-TSTTCCEEEEESSC--------CSSCCSCGGGGTT-CSEEEEESSCCCC--------CCSCGGGGTTCSEEEEE
T ss_pred HHhcc-cccceeEEEccCCC--------chhcChhhhhCCC-CCEEECCCCCccc--------hhHHHhccCCCCEEECC
Confidence 34444 45799999999766 5588888888777 9999999998832 34567899999999999
Q ss_pred eecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc-cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCC
Q 046380 183 GCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL-EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSN 261 (434)
Q Consensus 183 ~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~ 261 (434)
+ +.+..+...+..+++|++|++++|.......-... .........+++|+.|+++++.... +...+..+++
T Consensus 136 ~------n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~ 207 (328)
T 4fcg_A 136 R------NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQN 207 (328)
T ss_dssp S------CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTT
T ss_pred C------CccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhcCCCC
Confidence 8 44423334477899999999999876322100000 0000001235566666665554431 1123455556
Q ss_pred CcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380 262 LETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF 341 (434)
Q Consensus 262 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~ 341 (434)
|+.|++++|.+..+|.. ...+++|++|++++|.....+ ...+..+++|++|+++++
T Consensus 208 L~~L~L~~N~l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~----------------------p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 208 LKSLKIRNSPLSALGPA--IHHLPKLEELDLRGCTALRNY----------------------PPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp CCEEEEESSCCCCCCGG--GGGCTTCCEEECTTCTTCCBC----------------------CCCTTCCCCCCEEECTTC
T ss_pred CCEEEccCCCCCcCchh--hccCCCCCEEECcCCcchhhh----------------------HHHhcCCCCCCEEECCCC
Confidence 66666666555555431 223444455554444332221 122344555666666554
Q ss_pred cCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 342 LGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
. .... +..-+..+++|+.|+|++|..
T Consensus 264 ~-~~~~-~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 264 S-NLLT-LPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp T-TCCB-CCTTGGGCTTCCEEECTTCTT
T ss_pred C-chhh-cchhhhcCCCCCEEeCCCCCc
Confidence 2 1111 111124566666666666665
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=5e-15 Score=152.91 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=129.6
Q ss_pred ccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEe--
Q 046380 169 SNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSF-- 244 (434)
Q Consensus 169 ~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~-- 244 (434)
....+++|++|+|++ +.+ + .+..++..||+|++|.+.++... .....+...+++|++|++++
T Consensus 288 ~~~~~~~L~~L~Ls~------~~l~~~~~~~~~~~~~~L~~L~L~~~~~~--------~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLY------ALLETEDHCTLIQKCPNLEVLETRNVIGD--------RGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp GGGGGGGCCEEEETT------CCCCHHHHHHHHTTCTTCCEEEEEGGGHH--------HHHHHHHHHCTTCCEEEEECCC
T ss_pred HHhhcCCCcEEecCC------CcCCHHHHHHHHHhCcCCCEEeccCccCH--------HHHHHHHHhCCCCCEEEeecCc
Confidence 344666777777776 334 2 45556677777777777633220 11222334578888888883
Q ss_pred ---------EEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec---CCCCccee--------e-
Q 046380 245 ---------MVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN---CRFDGPVE--------I- 303 (434)
Q Consensus 245 ---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~---c~~l~~~~--------~- 303 (434)
...++.....+...+++|+.|++..+.++..........+++|++|++.. |..+.... +
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence 34555555556677888888888655554321111223477888888874 44554321 1
Q ss_pred cCCcccEEEecccc--CcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc---ccc
Q 046380 304 HSPNLETFVYKAGH--GEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE---IYS 378 (434)
Q Consensus 304 ~~p~L~~L~l~~~~--~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~ 378 (434)
.+++|+.|+++.+. .+...+......+++|++|.++++ ++++.++..+++.+++|+.|+|++|.+....+. ...
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 512 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL 512 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence 48888888885422 221222222345788888888887 688888888888888899998888886332222 234
Q ss_pred cccceeEeccCC
Q 046380 379 LTLKTLVVHGCD 390 (434)
Q Consensus 379 ~~L~~L~l~~c~ 390 (434)
++|+.|++++|.
T Consensus 513 ~~L~~L~ls~n~ 524 (592)
T 3ogk_B 513 PSLRYLWVQGYR 524 (592)
T ss_dssp SSCCEEEEESCB
T ss_pred CccCeeECcCCc
Confidence 678888888887
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.56 E-value=2e-14 Score=138.37 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=115.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++.+. ...++. +..+.+ |++|++++|.+ +. +....+++|++|++++
T Consensus 66 ~~L~~L~l~~n~--------i~~~~~-~~~l~~-L~~L~L~~n~i~~~----------~~~~~l~~L~~L~l~~------ 119 (347)
T 4fmz_A 66 TNLEYLNLNGNQ--------ITDISP-LSNLVK-LTNLYIGTNKITDI----------SALQNLTNLRELYLNE------ 119 (347)
T ss_dssp TTCCEEECCSSC--------CCCCGG-GTTCTT-CCEEECCSSCCCCC----------GGGTTCTTCSEEECTT------
T ss_pred CCccEEEccCCc--------cccchh-hhcCCc-CCEEEccCCcccCc----------hHHcCCCcCCEEECcC------
Confidence 677777776554 333333 333444 77777777766 32 4456777777777776
Q ss_pred EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
+.+..+.. +..+++|++|++.+|..... ......+++|++|+++++...+... +..+++|+.|++++
T Consensus 120 n~i~~~~~-~~~l~~L~~L~l~~n~~~~~---------~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 120 DNISDISP-LANLTKMYSLNLGANHNLSD---------LSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNY 186 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECTTCTTCCC---------CGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTT
T ss_pred CcccCchh-hccCCceeEEECCCCCCccc---------ccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccC
Confidence 44411111 56677777777777744221 0112345666666666544333211 45566666666666
Q ss_pred cccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380 270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS 348 (434)
Q Consensus 270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~ 348 (434)
|.+..++. ...+++|+.|+++++.-.....+ .+++|++|+++++... ... ....+++|++|+++++ .++.-
T Consensus 187 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L~l~~n-~l~~~- 258 (347)
T 4fmz_A 187 NQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT--DLS-PLANLSQLTWLEIGTN-QISDI- 258 (347)
T ss_dssp SCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--CCG-GGTTCTTCCEEECCSS-CCCCC-
T ss_pred Cccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC--CCc-chhcCCCCCEEECCCC-ccCCC-
Confidence 65555442 23455555555555432222223 4555555555554422 111 1344555555555554 22211
Q ss_pred HHHHHhcCCccceEEeeccccccccccccccccceeEeccCC
Q 046380 349 LEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCD 390 (434)
Q Consensus 349 l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 390 (434)
..+..+++|+.|++++|.+..-.......+|+.|++++|.
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred --hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc
Confidence 1123455555555555544221111123455555555553
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.56 E-value=2.4e-14 Score=137.78 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=124.9
Q ss_pred cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccc
Q 046380 110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
.+++++|++..+. ...++ .+..+.+ |++|++++|.+ +. +....+++|++|++++|...
T Consensus 87 l~~L~~L~L~~n~--------i~~~~-~~~~l~~-L~~L~l~~n~i~~~----------~~~~~l~~L~~L~l~~n~~~- 145 (347)
T 4fmz_A 87 LVKLTNLYIGTNK--------ITDIS-ALQNLTN-LRELYLNEDNISDI----------SPLANLTKMYSLNLGANHNL- 145 (347)
T ss_dssp CTTCCEEECCSSC--------CCCCG-GGTTCTT-CSEEECTTSCCCCC----------GGGTTCTTCCEEECTTCTTC-
T ss_pred CCcCCEEEccCCc--------ccCch-HHcCCCc-CCEEECcCCcccCc----------hhhccCCceeEEECCCCCCc-
Confidence 3789999987765 23333 3444555 99999988877 33 33678888888888874211
Q ss_pred eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
..+.. +..+++|++|.+.+|....... ...+++|+.|+++++...+.. .+..+++|+.|+++
T Consensus 146 ----~~~~~-~~~l~~L~~L~l~~~~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 146 ----SDLSP-LSNMTGLNYLTVTESKVKDVTP----------IANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAY 207 (347)
T ss_dssp ----CCCGG-GTTCTTCCEEECCSSCCCCCGG----------GGGCTTCSEEECTTSCCCCCG---GGGGCTTCCEEECC
T ss_pred ----ccccc-hhhCCCCcEEEecCCCcCCchh----------hccCCCCCEEEccCCcccccc---cccCCCccceeecc
Confidence 11111 5677888888888776633211 234566666666654433321 14556666666666
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK 347 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~ 347 (434)
++.+..++. ...+++|++|++++|.-.....+ .+++|++|+++++... .+ .....+++|++|.++++ .++.-
T Consensus 208 ~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~-~~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 208 VNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS--DI-NAVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp SSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CC-GGGTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccC--CC-hhHhcCCCcCEEEccCC-ccCCC
Confidence 665554432 23455666666665532222223 4566666666554422 11 12344556666666555 22221
Q ss_pred HHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380 348 SLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD 390 (434)
Q Consensus 348 ~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~ 390 (434)
..+..+++|+.|++++|.+...... ...++|+.|++++|+
T Consensus 281 ---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 281 ---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 1134556666666666554221111 123455666666554
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1e-15 Score=146.72 Aligned_cols=253 Identities=17% Similarity=0.154 Sum_probs=176.8
Q ss_pred HHHHHHHHhc-CCCeEEEEEeecCCCCCCCCccccccccccC--CCceeEEEEeeeeecccccccccccccccccCcccc
Q 046380 101 TRFVAKEILR-GKLQKLDLHVRDHVGNSLCDHYALPRVIFSS--GSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVR 177 (434)
Q Consensus 101 ~~wi~~~~~~-~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~ 177 (434)
.+|-..+ .. ...++++++... .. +..+... .. ++.|++.++.+.. .++....+++|+
T Consensus 37 ~~W~~~~-~~~~~~~~l~l~~~~-------~~---~~~~~~~~~~~-l~~L~l~~n~l~~--------~~~~~~~~~~L~ 96 (336)
T 2ast_B 37 KRWYRLA-SDESLWQTLDLTGKN-------LH---PDVTGRLLSQG-VIAFRCPRSFMDQ--------PLAEHFSPFRVQ 96 (336)
T ss_dssp HHHHHHH-TCSTTSSEEECTTCB-------CC---HHHHHHHHHTT-CSEEECTTCEECS--------CCCSCCCCBCCC
T ss_pred HHHHHHh-cCchhheeecccccc-------CC---HHHHHhhhhcc-ceEEEcCCccccc--------cchhhccCCCCC
Confidence 3466654 33 347788775433 01 2222222 34 9999999998822 125567899999
Q ss_pred eEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeE-EeCchhHHH
Q 046380 178 RLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFM-VLNDRTFES 254 (434)
Q Consensus 178 ~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~ 254 (434)
+|++++ +.+ + .+...+..||+|++|++++|...+. .......+++|++|+++++ ..++.....
T Consensus 97 ~L~L~~------~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--------~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 97 HMDLSN------SVIEVSTLHGILSQCSKLQNLSLEGLRLSDP--------IVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp EEECTT------CEECHHHHHHHHTTBCCCSEEECTTCBCCHH--------HHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred EEEccC------CCcCHHHHHHHHhhCCCCCEEeCcCcccCHH--------HHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 999999 666 4 5888899999999999999975211 1112234899999999988 566656676
Q ss_pred HhccCCCCcEEEeecc-ccccCCCCcchhhcc-CccEEEeecCC-CCcce----ee-cCCcccEEEecccc-Ccccceee
Q 046380 255 ALSKFSNLETLKLLSS-VFGKLPSSLSSAILK-KLKLVRMENCR-FDGPV----EI-HSPNLETFVYKAGH-GEIASFHF 325 (434)
Q Consensus 255 ~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~-~L~~L~l~~c~-~l~~~----~~-~~p~L~~L~l~~~~-~~~~~~~~ 325 (434)
.+..+++|+.|++++| .++..........++ +|++|++++|. .+... .+ .+++|++|+++++. .+.... .
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~ 241 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-Q 241 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-G
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-H
Confidence 7889999999999999 776421111245688 99999999985 34321 12 69999999999876 332222 2
Q ss_pred cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCC
Q 046380 326 GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCD 390 (434)
Q Consensus 326 ~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 390 (434)
....+++|++|+++++.+..+.++..+ ..+|+|+.|++++| +....+.....+++.|+++++.
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCC
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEeccc
Confidence 456779999999999976777665444 47999999999999 5444555445568888886553
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=7.9e-15 Score=151.40 Aligned_cols=207 Identities=13% Similarity=0.083 Sum_probs=144.0
Q ss_pred cccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEe---
Q 046380 170 NFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSF--- 244 (434)
Q Consensus 170 ~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~--- 244 (434)
...+++|++|++++ +.+ + .+..++..||+|++|.+.+|... .....+...+++|++|++.+
T Consensus 285 ~~~~~~L~~L~L~~------~~l~~~~l~~~~~~~~~L~~L~l~~~~~~--------~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 285 YSVCSRLTTLNLSY------ATVQSYDLVKLLCQCPKLQRLWVLDYIED--------AGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp HHHHTTCCEEECTT------CCCCHHHHHHHHTTCTTCCEEEEEGGGHH--------HHHHHHHHHCTTCCEEEEECSCT
T ss_pred HHhhCCCCEEEccC------CCCCHHHHHHHHhcCCCcCEEeCcCccCH--------HHHHHHHHhCCCCCEEEEecCcc
Confidence 34678888888888 445 3 66777888999999999887220 11222333578999999854
Q ss_pred ------EEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEee-----cCCCCcce----e----e-c
Q 046380 245 ------MVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRME-----NCRFDGPV----E----I-H 304 (434)
Q Consensus 245 ------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~-----~c~~l~~~----~----~-~ 304 (434)
...++.....+...+++|+.|.+..+.++..........+++|++|++. +|..+... . + .
T Consensus 351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 2344555555566789999998776665543221123458899999999 56666622 1 2 5
Q ss_pred CCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc---cccccc
Q 046380 305 SPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE---IYSLTL 381 (434)
Q Consensus 305 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~~~L 381 (434)
+++|+.|++++ .....++......+++|++|.++++ ++++.++..+...+|+|+.|+|++|.+....+. ...++|
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 89999999976 3332222222234789999999998 788999999888999999999999998432222 234789
Q ss_pred ceeEeccCCcc
Q 046380 382 KTLVVHGCDHL 392 (434)
Q Consensus 382 ~~L~l~~c~~l 392 (434)
+.|++++|+..
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 99999999873
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=1.8e-13 Score=137.26 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=58.2
Q ss_pred ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380 257 SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKT 335 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~ 335 (434)
..+++|+.|++++|.+...+. ...+++|++|+++++.-.....+ .+++|+.|+++++... +.. ....+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~--~~~-~~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE--DIS-PISNLKNLTY 313 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS--CCG-GGGGCTTCSE
T ss_pred hcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCccc--Cch-hhcCCCCCCE
Confidence 334444444444444433321 22344444444444422111112 3555555555554322 111 1345566666
Q ss_pred EEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380 336 LAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 336 L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 392 (434)
|+++++ .+..... +..+++|+.|++++|.+..........+|+.|++++|...
T Consensus 314 L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 314 LTLYFN-NISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp EECCSS-CCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EECcCC-cCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccC
Confidence 666666 3322211 3466777777777766532211122356777777777543
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.49 E-value=5.1e-14 Score=137.83 Aligned_cols=256 Identities=13% Similarity=0.055 Sum_probs=148.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|++..+. ...++...+....+|++|+|++|.+.. +++ ....+++|++|++++
T Consensus 69 ~~L~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~------ 126 (390)
T 3o6n_A 69 RQVELLNLNDLQ--------IEEIDTYAFAYAHTIQKLYMGFNAIRY--------LPPHVFQNVPLLTVLVLER------ 126 (390)
T ss_dssp CCCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred ccCcEEECCCCc--------ccccChhhccCCCCcCEEECCCCCCCc--------CCHHHhcCCCCCCEEECCC------
Confidence 789999987654 455665445444449999999988722 123 356889999999988
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
..+ +-...++..+++|++|++++|..... .......+++|+.|+++++...... +..+++|+.|+++
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERI--------EDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVS 194 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBC--------CTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECC
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCcc--------ChhhccCCCCCCEEECCCCcCCccc----cccccccceeecc
Confidence 444 22233457789999999998876322 1112345789999999876554421 3344555555554
Q ss_pred ccc-------------------cccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecC
Q 046380 269 SSV-------------------FGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGG 327 (434)
Q Consensus 269 ~~~-------------------~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~ 327 (434)
++. +..+|.. .+++|+.|+++++.--....+ .+++|++|+++++... +. ...+
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~ 268 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE--KIMYHPF 268 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--EEESGGG
T ss_pred cccccccCCCCcceEEECCCCeeeecccc----ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC--CcChhHc
Confidence 443 3333221 234666666666543222223 5778888887776533 21 1234
Q ss_pred CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-ccccccceeEeccCCccceeeEecCceEEEE
Q 046380 328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE-IYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQ 406 (434)
Q Consensus 328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~i~~~~l~~~~ 406 (434)
..+++|++|.++++ .++. +......+|+|+.|++++|.+..-... ....+|+.|++++|.....-....+.+..+.
T Consensus 269 ~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~ 345 (390)
T 3o6n_A 269 VKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345 (390)
T ss_dssp TTCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred cccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEE
Confidence 56777888888776 3322 111124567788888887776321111 1235677777777754322112234455555
Q ss_pred Eee
Q 046380 407 YVG 409 (434)
Q Consensus 407 ~~~ 409 (434)
..+
T Consensus 346 l~~ 348 (390)
T 3o6n_A 346 LSH 348 (390)
T ss_dssp CCS
T ss_pred cCC
Confidence 444
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=3.4e-13 Score=135.23 Aligned_cols=241 Identities=14% Similarity=0.103 Sum_probs=131.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++.+. ...+|. +..+.+ |++|++++|.+ .. +....+++|++|++++
T Consensus 68 ~~L~~L~Ls~n~--------l~~~~~-~~~l~~-L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~------ 121 (466)
T 1o6v_A 68 NNLTQINFSNNQ--------LTDITP-LKNLTK-LVDILMNNNQIADI----------TPLANLTNLTGLTLFN------ 121 (466)
T ss_dssp TTCCEEECCSSC--------CCCCGG-GTTCTT-CCEEECCSSCCCCC----------GGGTTCTTCCEEECCS------
T ss_pred cCCCEEECCCCc--------cCCchh-hhcccc-CCEEECCCCccccC----------hhhcCCCCCCEEECCC------
Confidence 577777776554 333333 333444 77777777666 22 2255667777777766
Q ss_pred EeeChHHHHHhcCCCcceeeeccccCCCCcc---ccccc---------ccceeeccCCceeEEEEEeEEeCchhHHHHhc
Q 046380 190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFC---CRFLE---------FKVANENSMSSLETLVFSFMVLNDRTFESALS 257 (434)
Q Consensus 190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~---~~~l~---------~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~ 257 (434)
+.+..+.. +..+++|++|++++|...+... +..++ ... ....+++|+.|+++++...+.. .+.
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~---~l~ 196 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS---VLA 196 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG---GGG
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh---hhc
Confidence 33311111 5666777777776665533211 00000 000 0223455666655554433321 245
Q ss_pred cCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEE
Q 046380 258 KFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTL 336 (434)
Q Consensus 258 ~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L 336 (434)
.+++|+.|++++|.+...+. ...+++|++|+++++.--....+ .+++|+.|+++++... +.. ....+++|++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--NLA-PLSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--CCG-GGTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc--cch-hhhcCCCCCEE
Confidence 56666666666665555432 23456677777666542222223 5677777777766533 111 14567788888
Q ss_pred EEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380 337 AVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 337 ~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 392 (434)
.++++ .+.... . +..+++|+.|++++|.+..-......++|+.|++++|...
T Consensus 271 ~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 271 KLGAN-QISNIS--P-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp ECCSS-CCCCCG--G-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred ECCCC-ccCccc--c-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC
Confidence 88877 333221 1 4578888888888888733221223468888998888543
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=130.56 Aligned_cols=247 Identities=13% Similarity=0.026 Sum_probs=170.3
Q ss_pred cCCCeEEEEEeecCCCCCCCCccccccccc-cCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeeccc
Q 046380 110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIF-SSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMAL 187 (434)
Q Consensus 110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~ 187 (434)
.+++++|+++.+. ...+|...+ .+.+ |++|++++|.+.. ++ ..+..+++|++|++++
T Consensus 51 ~~~L~~L~l~~n~--------i~~~~~~~~~~l~~-L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~---- 109 (353)
T 2z80_A 51 TEAVKSLDLSNNR--------ITYISNSDLQRCVN-LQALVLTSNGINT--------IEEDSFSSLGSLEHLDLSY---- 109 (353)
T ss_dssp CTTCCEEECTTSC--------CCEECTTTTTTCTT-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCS----
T ss_pred cccCcEEECCCCc--------CcccCHHHhccCCC-CCEEECCCCccCc--------cCHhhcCCCCCCCEEECCC----
Confidence 3689999987665 456666444 4455 9999999998722 11 3467899999999998
Q ss_pred ceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccce--eeccCCceeEEEEEeEE-eCchhHHHHhccCCCCc
Q 046380 188 QGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVA--NENSMSSLETLVFSFMV-LNDRTFESALSKFSNLE 263 (434)
Q Consensus 188 ~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~--~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~~L~ 263 (434)
..+ +.....+.++++|++|++++|..... .. ....+++|++|+++++. .... ....+..+++|+
T Consensus 110 --n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---------~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~ 177 (353)
T 2z80_A 110 --NYLSNLSSSWFKPLSSLTFLNLLGNPYKTL---------GETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLE 177 (353)
T ss_dssp --SCCSSCCHHHHTTCTTCSEEECTTCCCSSS---------CSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEE
T ss_pred --CcCCcCCHhHhCCCccCCEEECCCCCCccc---------CchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCC
Confidence 555 33345578899999999999976322 22 34468999999998863 2221 122467889999
Q ss_pred EEEeeccccccC-CCCcchhhccCccEEEeecCCCCccee--e-cCCcccEEEeccccCcccc--eeecCCCCCCccEEE
Q 046380 264 TLKLLSSVFGKL-PSSLSSAILKKLKLVRMENCRFDGPVE--I-HSPNLETFVYKAGHGEIAS--FHFGGRGFGNIKTLA 337 (434)
Q Consensus 264 ~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~c~~l~~~~--~-~~p~L~~L~l~~~~~~~~~--~~~~~~~~~~Lk~L~ 337 (434)
.|++++|.+... |.. ...+++|++|+++++..-.... + .+++|++|+++++...... ..........++.+.
T Consensus 178 ~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 178 ELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEETTCCEECTTT--TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred EEECCCCCcCccCHHH--HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 999999988765 332 3457789999999875322211 2 4899999999987643211 111234567889999
Q ss_pred EcCccCCcHHHH---HHHHhcCCccceEEeecccccccccc--ccccccceeEeccCCcc
Q 046380 338 VNGFLGLRNKSL---EELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 338 l~~~~~~~~~~l---~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~l 392 (434)
+.+. .+++..+ ...+..+++|+.|++++|.+..-... ....+|+.|++++++..
T Consensus 256 L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 256 FRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 9988 6766644 44467899999999999987421111 23468999999999654
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=1e-13 Score=132.48 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=125.1
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL 224 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l 224 (434)
++.|+|+++.+.. +|+....+++|++|+|++ +.+..+...+..+++|++|++++|....
T Consensus 83 l~~L~L~~n~l~~--------lp~~l~~l~~L~~L~L~~------n~l~~lp~~~~~l~~L~~L~Ls~n~l~~------- 141 (328)
T 4fcg_A 83 RVALELRSVPLPQ--------FPDQAFRLSHLQHMTIDA------AGLMELPDTMQQFAGLETLTLARNPLRA------- 141 (328)
T ss_dssp CCEEEEESSCCSS--------CCSCGGGGTTCSEEEEES------SCCCCCCSCGGGGTTCSEEEEESCCCCC-------
T ss_pred eeEEEccCCCchh--------cChhhhhCCCCCEEECCC------CCccchhHHHhccCCCCEEECCCCcccc-------
Confidence 9999999998833 356677899999999998 4432233345678999999999987632
Q ss_pred cccceeeccCCceeEEEEEeEEeCchhHH--------HHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380 225 EFKVANENSMSSLETLVFSFMVLNDRTFE--------SALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR 296 (434)
Q Consensus 225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~ 296 (434)
++.....+++|++|+++++........ ..+..+++|+.|++++|.+..+|.. ..
T Consensus 142 --lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~--l~-------------- 203 (328)
T 4fcg_A 142 --LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IA-------------- 203 (328)
T ss_dssp --CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG--GG--------------
T ss_pred --CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh--hc--------------
Confidence 222234566677777766432211000 0122356666666666655555431 12
Q ss_pred CCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-
Q 046380 297 FDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE- 375 (434)
Q Consensus 297 ~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~- 375 (434)
.+++|++|+++++... ++...+..+++|++|+++++. .... +...+..+++|+.|++++|........
T Consensus 204 -------~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 204 -------NLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCT-ALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp -------GCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCT-TCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred -------CCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCc-chhh-hHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 3555566665554432 222345667888888888863 2221 222345789999999999987332221
Q ss_pred -ccccccceeEeccCCccceee
Q 046380 376 -IYSLTLKTLVVHGCDHLHFAE 396 (434)
Q Consensus 376 -~~~~~L~~L~l~~c~~l~~~~ 396 (434)
....+|+.|++++|..+..+.
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCC
T ss_pred hhcCCCCCEEeCCCCCchhhcc
Confidence 234689999999998887544
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.2e-13 Score=142.95 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=119.3
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~ 189 (434)
++++.|++..+. ...+++..|....+|++|+|++|.+.. +++ .+..+++|++|+|++
T Consensus 75 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~------ 132 (597)
T 3oja_B 75 RQVELLNLNDLQ--------IEEIDTYAFAYAHTIQKLYMGFNAIRY--------LPPHVFQNVPLLTVLVLER------ 132 (597)
T ss_dssp CCCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred CCCcEEECCCCC--------CCCCChHHhcCCCCCCEEECCCCcCCC--------CCHHHHcCCCCCCEEEeeC------
Confidence 789999987655 455665444443349999999988722 223 357899999999998
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+.+ .-...++.++++|+.|.+++|..... .......+++|+.|+++++...... +..+++|+.|+++
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~ 200 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERI--------EDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVS 200 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBC--------CTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECC
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCC--------ChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcc
Confidence 544 23334467899999999999876322 1112346789999999876554421 3344555555544
Q ss_pred cccccc-------------------CCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecC
Q 046380 269 SSVFGK-------------------LPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGG 327 (434)
Q Consensus 269 ~~~~~~-------------------~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~ 327 (434)
++.+.. +|.. ..++|+.|+++++.--....+ .+++|+.|+++++... +. ...+
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~--~~~~~~~ 274 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE--KIMYHPF 274 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--EEESGGG
T ss_pred cCccccccCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC--CCCHHHh
Confidence 443332 2211 123455555555432222222 4566666666554422 11 1123
Q ss_pred CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
..+++|++|.++++ .++. +......+|+|+.|+|++|.+
T Consensus 275 ~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 275 VKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp TTCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSCC
T ss_pred cCccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCCC
Confidence 34555555555554 2221 111112345555555555554
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=9.5e-14 Score=131.84 Aligned_cols=245 Identities=13% Similarity=0.078 Sum_probs=151.2
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEee-eee-cccccccccccccccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRH-CKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~-~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
.++++|++..+. ......+|..+..... |++|++++ +.+ .. +|.....+++|++|+|++
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~--------~p~~l~~l~~L~~L~Ls~----- 110 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPY-LNFLYIGGINNLVGP--------IPPAIAKLTQLHYLYITH----- 110 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCTT-CSEEEEEEETTEESC--------CCGGGGGCTTCSEEEEEE-----
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhCCCC-CCeeeCCCCCccccc--------CChhHhcCCCCCEEECcC-----
Confidence 578888888765 1111256776666666 99999985 555 22 245667889999999988
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCC-CCcEEE
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFS-NLETLK 266 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~ 266 (434)
..+ ..+...+..+++|++|++++|.... ........+++|++|+++++...+.. ...+..++ +|+.|+
T Consensus 111 -n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 111 -TNVSGAIPDFLSQIKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMT 180 (313)
T ss_dssp -ECCEEECCGGGGGCTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEE
T ss_pred -CeeCCcCCHHHhCCCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEE
Confidence 555 3444456778899999998887631 12223345788888888765443211 12345565 888888
Q ss_pred eecccccc-CCCCcchhhccCccEEEeecCCCC--cceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc
Q 046380 267 LLSSVFGK-LPSSLSSAILKKLKLVRMENCRFD--GPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL 342 (434)
Q Consensus 267 l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l--~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~ 342 (434)
+++|.+.. +|.. ...+. |+.|+++++.-. ....+ .+++|+.|+++++... +.......+++|++|+++++
T Consensus 181 L~~N~l~~~~~~~--~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~~L~Ls~N- 254 (313)
T 1ogq_A 181 ISRNRLTGKIPPT--FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNN- 254 (313)
T ss_dssp CCSSEEEEECCGG--GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC--CBGGGCCCCTTCCEEECCSS-
T ss_pred CcCCeeeccCChH--HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee--eecCcccccCCCCEEECcCC-
Confidence 88887763 4432 12233 888888776321 11223 5788888888776533 11122456678888888877
Q ss_pred CCcHHHHHHHHhcCCccceEEeeccccccccccc--cccccceeEeccCCcc
Q 046380 343 GLRNKSLEELISACILLENLYLNSCAIPKGHLEI--YSLTLKTLVVHGCDHL 392 (434)
Q Consensus 343 ~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l 392 (434)
.++.. ++..+..+++|+.|++++|.+.. .++. ...+|+.|++.+++.+
T Consensus 255 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 255 RIYGT-LPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCEEC-CCGGGGGCTTCCEEECCSSEEEE-ECCCSTTGGGSCGGGTCSSSEE
T ss_pred cccCc-CChHHhcCcCCCEEECcCCcccc-cCCCCccccccChHHhcCCCCc
Confidence 44322 22233577888888888887732 2222 2346677777776644
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=137.85 Aligned_cols=243 Identities=14% Similarity=0.060 Sum_probs=122.9
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccc-ccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPR-VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|+++.+. ...+++ .+..+.+ |++|+|+++.+.. +++ .+..+++|++|+|++
T Consensus 56 ~~L~~L~L~~n~--------i~~~~~~~~~~l~~-L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~----- 113 (477)
T 2id5_A 56 PHLEELELNENI--------VSAVEPGAFNNLFN-LRTLGLRSNRLKL--------IPLGVFTGLSNLTKLDISE----- 113 (477)
T ss_dssp TTCCEEECTTSC--------CCEECTTTTTTCTT-CCEEECCSSCCCS--------CCTTSSTTCTTCCEEECTT-----
T ss_pred CCCCEEECCCCc--------cCEeChhhhhCCcc-CCEEECCCCcCCc--------cCcccccCCCCCCEEECCC-----
Confidence 577777776544 333433 3333444 7777777776622 122 245677777777776
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL 267 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 267 (434)
..+ ......+..+++|++|.+.++..... .......+++|+.|+++++....... ..+..+++|+.|++
T Consensus 114 -n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l 183 (477)
T 2id5_A 114 -NKIVILLDYMFQDLYNLKSLEVGDNDLVYI--------SHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRL 183 (477)
T ss_dssp -SCCCEECTTTTTTCTTCCEEEECCTTCCEE--------CTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEE
T ss_pred -CccccCChhHccccccCCEEECCCCcccee--------ChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeC
Confidence 333 22233456677777777777655211 01122346677777777665443221 24566777777777
Q ss_pred eccccccCCCCcchhhccCccEEEeecCCCCccee--------------------------e-cCCcccEEEeccccCcc
Q 046380 268 LSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE--------------------------I-HSPNLETFVYKAGHGEI 320 (434)
Q Consensus 268 ~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~--------------------------~-~~p~L~~L~l~~~~~~~ 320 (434)
.++.+..++.. ....+++|++|++++|..+..+. + .+++|+.|+++++...
T Consensus 184 ~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 261 (477)
T 2id5_A 184 RHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS- 261 (477)
T ss_dssp ESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-
T ss_pred CCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-
Confidence 77766554321 12235566666666654333222 1 2445555555444322
Q ss_pred ccee-ecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380 321 ASFH-FGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD 390 (434)
Q Consensus 321 ~~~~-~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~ 390 (434)
... ..+..+++|++|.++++ .+.... ...+..+++|+.|+|++|.+..-... ....+|+.|++++++
T Consensus 262 -~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 262 -TIEGSMLHELLRLQEIQLVGG-QLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -EECTTSCTTCTTCCEEECCSS-CCSEEC-TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -ccChhhccccccCCEEECCCC-ccceEC-HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 111 11334555666665555 222110 11123556666666666655221111 123456666666554
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.41 E-value=4.8e-13 Score=133.70 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=142.9
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+++++|+++.+. ...+| .+..+.+ |++|++++|.+.. + + ...+++|++|++++ .
T Consensus 42 ~~L~~L~Ls~n~--------l~~~~-~l~~l~~-L~~L~Ls~n~l~~--------~-~-~~~l~~L~~L~Ls~------N 95 (457)
T 3bz5_A 42 ATLTSLDCHNSS--------ITDMT-GIEKLTG-LTKLICTSNNITT--------L-D-LSQNTNLTYLACDS------N 95 (457)
T ss_dssp TTCCEEECCSSC--------CCCCT-TGGGCTT-CSEEECCSSCCSC--------C-C-CTTCTTCSEEECCS------S
T ss_pred CCCCEEEccCCC--------cccCh-hhcccCC-CCEEEccCCcCCe--------E-c-cccCCCCCEEECcC------C
Confidence 788999887665 33444 4455566 9999999988733 1 2 67889999999988 5
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
.+..+. +..+++|++|++++|..... . ...+++|++|+++++..... -+..+++|+.|++++|
T Consensus 96 ~l~~~~--~~~l~~L~~L~L~~N~l~~l---------~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 96 KLTNLD--VTPLTKLTYLNCDTNKLTKL---------D--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECCSSCCSCC---------C--CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTC
T ss_pred CCceee--cCCCCcCCEEECCCCcCCee---------c--CCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCC
Confidence 452222 67789999999998876321 1 34678889988877655542 2567888999999888
Q ss_pred -ccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380 271 -VFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS 348 (434)
Q Consensus 271 -~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~ 348 (434)
.+..++. ..+++|++|+++++. +..+.+ .+++|+.|.++++..+ ++ ....+++|++|+++++ .++.
T Consensus 159 ~~~~~~~~----~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~--~~--~l~~l~~L~~L~Ls~N-~l~~-- 226 (457)
T 3bz5_A 159 KKITKLDV----TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNIT--KL--DLNQNIQLTFLDCSSN-KLTE-- 226 (457)
T ss_dssp SCCCCCCC----TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCS--CC--CCTTCTTCSEEECCSS-CCSC--
T ss_pred Cccccccc----ccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCC--ee--ccccCCCCCEEECcCC-cccc--
Confidence 4444442 347789999988864 333345 6888999998887644 22 3567889999999888 4443
Q ss_pred HHHHHhcCCccceEEeeccccc
Q 046380 349 LEELISACILLENLYLNSCAIP 370 (434)
Q Consensus 349 l~~l~~~~p~Le~L~l~~~~~~ 370 (434)
++ +..+++|+.|++++|.+.
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCS
T ss_pred cC--ccccCCCCEEEeeCCcCC
Confidence 22 467899999999998873
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=2.6e-13 Score=139.32 Aligned_cols=242 Identities=14% Similarity=0.061 Sum_probs=132.4
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+++++|++..+. ...+|..+... + |++|++++|.+.. + + ...+++|++|++.+ .
T Consensus 282 ~~L~~L~l~~~~--------l~~l~~~~~~~-~-L~~L~l~~n~~~~--------l-~-~~~l~~L~~L~l~~------n 335 (570)
T 2z63_A 282 TNVSSFSLVSVT--------IERVKDFSYNF-G-WQHLELVNCKFGQ--------F-P-TLKLKSLKRLTFTS------N 335 (570)
T ss_dssp TTCSEEEEESCE--------ECSCCBCCSCC-C-CSEEEEESCBCSS--------C-C-BCBCSSCCEEEEES------C
T ss_pred CcccEEEecCcc--------chhhhhhhccC-C-ccEEeeccCcccc--------c-C-cccccccCEEeCcC------C
Confidence 456666665444 33455555444 4 6666666666522 1 1 14566677777766 3
Q ss_pred ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
.. ..... ..+|+|++|++++|....... .......+++|++|+++++....... .+..+++|+.|++++
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~ 405 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQH 405 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEE--EEETCTTCCEEECTT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCccccccc--cccccCCCCEEEccC
Confidence 22 11111 556777777777665421100 01122356777777776543332111 145677777777777
Q ss_pred cccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcH
Q 046380 270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRN 346 (434)
Q Consensus 270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~ 346 (434)
|.+...+..-....+++|++|++++|...... .+ .+++|++|+++++......+...+..+++|++|+++++ .++.
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~ 484 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 484 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCE
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-cccc
Confidence 76665432112345677777777776432221 12 47778888877765332233344566777888888777 3332
Q ss_pred HHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380 347 KSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD 390 (434)
Q Consensus 347 ~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~ 390 (434)
.. ...+..+++|+.|++++|.+...... ....+|+.|++++++
T Consensus 485 ~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 485 LS-PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 21 12234677888888887776321111 123567777777764
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.40 E-value=5.1e-13 Score=134.25 Aligned_cols=223 Identities=16% Similarity=0.047 Sum_probs=143.5
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
++++.|+++.+. ...++...|. +.+ |++|+|++|.+.. + +..+.++++|++|+|++
T Consensus 32 ~~l~~L~L~~n~--------l~~~~~~~~~~l~~-L~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~L~~----- 89 (477)
T 2id5_A 32 TETRLLDLGKNR--------IKTLNQDEFASFPH-LEELELNENIVSA--------VEPGAFNNLFNLRTLGLRS----- 89 (477)
T ss_dssp TTCSEEECCSSC--------CCEECTTTTTTCTT-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCS-----
T ss_pred CCCcEEECCCCc--------cceECHhHccCCCC-CCEEECCCCccCE--------eChhhhhCCccCCEEECCC-----
Confidence 578888887655 4455544444 455 9999999987722 1 24567899999999998
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL 267 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 267 (434)
..+ ......+.++++|++|++++|..... .......+++|++|+++++...... ...+..+++|+.|++
T Consensus 90 -n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 90 -NRLKLIPLGVFTGLSNLTKLDISENKIVIL--------LDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTL 159 (477)
T ss_dssp -SCCCSCCTTSSTTCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEE
T ss_pred -CcCCccCcccccCCCCCCEEECCCCccccC--------ChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEEC
Confidence 444 22233467799999999998876321 1122346789999999875443321 124578899999999
Q ss_pred eccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCC
Q 046380 268 LSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGL 344 (434)
Q Consensus 268 ~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~ 344 (434)
++|.+..+|.. ....+++|+.|+++++..... ..+ .+++|+.|+++++... ..+........+|++|+++++ .+
T Consensus 160 ~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n-~l 236 (477)
T 2id5_A 160 EKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHC-NL 236 (477)
T ss_dssp ESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC-CEECTTTTTTCCCSEEEEESS-CC
T ss_pred CCCcCcccChh-HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc-cccCcccccCccccEEECcCC-cc
Confidence 99988877631 134578999999998753222 223 5889999998875421 112122223347777777776 33
Q ss_pred cHHHHHHHHhcCCccceEEeecccc
Q 046380 345 RNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 345 ~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+.. -...+..+++|+.|+|++|.+
T Consensus 237 ~~~-~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 237 TAV-PYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp CSC-CHHHHTTCTTCCEEECCSSCC
T ss_pred ccc-CHHHhcCccccCeeECCCCcC
Confidence 321 112335667777777777665
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=3e-13 Score=127.80 Aligned_cols=230 Identities=16% Similarity=0.075 Sum_probs=155.4
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcc
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIR 206 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~ 206 (434)
...+|..++ .+ |++|+++++.+.. +++. +..+++|++|++++ ..+ . ........+++|+
T Consensus 19 l~~ip~~~~--~~-l~~L~L~~n~l~~--------i~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 19 LTSVPTGIP--SS-ATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSS------NGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp CSSCCSCCC--TT-CCEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCEEEEEEHHHHSCSCCC
T ss_pred cccCCCCCC--CC-CCEEECCCCccCc--------cCHhHhhccccCCEEECCC------CccCcccCcccccccccccC
Confidence 455666544 24 9999999998732 2233 46899999999998 444 1 2234455799999
Q ss_pred eeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC
Q 046380 207 DFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK 286 (434)
Q Consensus 207 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~ 286 (434)
+|++++|... ........+++|++|+++++..........+..+++|+.|++++|.+...+.. ....+++
T Consensus 82 ~L~Ls~n~i~---------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 151 (306)
T 2z66_A 82 YLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSS 151 (306)
T ss_dssp EEECCSCSEE---------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTT
T ss_pred EEECCCCccc---------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcC
Confidence 9999998762 23333556899999999876655433223567889999999999987665321 1245789
Q ss_pred ccEEEeecCCCCc---ceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccce
Q 046380 287 LKLVRMENCRFDG---PVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLEN 361 (434)
Q Consensus 287 L~~L~l~~c~~l~---~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~ 361 (434)
|++|+++++.... ...+ .+++|++|+++++... +. ...+..+++|++|+++++ .++.... ..+..+++|+.
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~ 227 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQV 227 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTS-CCSBCCS-GGGTTCTTCCE
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCC-ccCccCh-hhccCcccCCE
Confidence 9999998874322 1223 6899999999987643 22 124567889999999988 3332111 11357899999
Q ss_pred EEeecccccccc---ccccccccceeEeccCCc
Q 046380 362 LYLNSCAIPKGH---LEIYSLTLKTLVVHGCDH 391 (434)
Q Consensus 362 L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~ 391 (434)
|++++|.+.... +.....+|+.|++++++.
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999999874322 222234899999998864
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=2.3e-13 Score=135.99 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=129.0
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHH----hcCCCcceeeeccccCCCC
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNY----FQCSGIRDFDEAFVYRPDH 218 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~----~~cp~L~~L~l~~~~~~~~ 218 (434)
|++|+|++|.+.. .++..++.....+++|++|++++ +.+ + ....+. ...++|++|++++|...+.
T Consensus 87 L~~L~L~~n~i~~---~~~~~l~~~l~~~~~L~~L~Ls~------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 87 IQKLSLQNCCLTG---AGCGVLSSTLRTLPTLQELHLSD------NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp CCEEECTTSCCBG---GGHHHHHHHTTSCTTCCEEECCS------SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred eeEEEccCCCCCH---HHHHHHHHHHccCCceeEEECCC------CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 7777777776631 00011223455677777777777 444 2 333322 2245677777777754221
Q ss_pred cccccccccceeeccCCceeEEEEEeEEeCchhHHHHhc----cCCCCcEEEeeccccccCCCCc---chhhccCccEEE
Q 046380 219 FCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALS----KFSNLETLKLLSSVFGKLPSSL---SSAILKKLKLVR 291 (434)
Q Consensus 219 ~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~p~~~---~~~~~~~L~~L~ 291 (434)
.. ..+......+++|++|+++++...+.....+.. ..++|+.|++++|.++..+... ....+++|++|+
T Consensus 158 ~~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 158 SC----EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp GH----HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred HH----HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 10 001112234577888888776655443332222 3567888888877665532100 122467788888
Q ss_pred eecCCCCccee-------e--cCCcccEEEeccccCcccc---eeecCCCCCCccEEEEcCccCCcHHHHHHHHh----c
Q 046380 292 MENCRFDGPVE-------I--HSPNLETFVYKAGHGEIAS---FHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS----A 355 (434)
Q Consensus 292 l~~c~~l~~~~-------~--~~p~L~~L~l~~~~~~~~~---~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~----~ 355 (434)
++++. +.... + .+++|++|+++++..+..+ +......+++|++|+++++ .+++.+...+.. .
T Consensus 234 Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 234 LGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEP 311 (461)
T ss_dssp CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTST
T ss_pred ccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccC
Confidence 87763 22211 1 3678888888776544222 2222345778888888877 666665554443 2
Q ss_pred CCccceEEeecccccccccc------ccccccceeEeccCC
Q 046380 356 CILLENLYLNSCAIPKGHLE------IYSLTLKTLVVHGCD 390 (434)
Q Consensus 356 ~p~Le~L~l~~~~~~~~~~~------~~~~~L~~L~l~~c~ 390 (434)
.++|+.|++++|.+...... ....+|+.|++++|.
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 36888888888876432211 123678888888884
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.38 E-value=4.2e-13 Score=138.93 Aligned_cols=243 Identities=13% Similarity=-0.001 Sum_probs=109.5
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
++++++++..+. ...+| .+..+.+ |++|++++|.+.. + +.. .+++|++|++++|...
T Consensus 285 ~~L~~L~l~~~~--------~~~l~-~l~~~~~-L~~L~l~~n~l~~--------l-p~~-~l~~L~~L~l~~n~~~--- 341 (606)
T 3vq2_A 285 ANVSAMSLAGVS--------IKYLE-DVPKHFK-WQSLSIIRCQLKQ--------F-PTL-DLPFLKSLTLTMNKGS--- 341 (606)
T ss_dssp TTCSEEEEESCC--------CCCCC-CCCTTCC-CSEEEEESCCCSS--------C-CCC-CCSSCCEEEEESCSSC---
T ss_pred CCCCEEEecCcc--------chhhh-hcccccc-CCEEEcccccCcc--------c-ccC-CCCccceeeccCCcCc---
Confidence 456666665544 23344 3333344 6666666666522 1 222 6666666666653111
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
... .+..+|+|++|++++|....... .......+++|++|+++++...... ..+..+++|+.|++++|
T Consensus 342 --~~~--~~~~l~~L~~L~ls~n~l~~~~~------~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 342 --ISF--KKVALPSLSYLDLSRNALSFSGC------CSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHS 409 (606)
T ss_dssp --EEC--CCCCCTTCCEEECCSSCEEEEEE------CCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTS
T ss_pred --cch--hhccCCCCCEEECcCCccCCCcc------hhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCC
Confidence 101 12345555555555554311100 0111234455555555544322211 23445556666666665
Q ss_pred ccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380 271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK 347 (434)
Q Consensus 271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~ 347 (434)
.+...+..-....+++|++|++++|...... .+ .+++|++|+++++..........+..+++|++|+++++ .++..
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 488 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQI 488 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEE
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCcc
Confidence 5544422111234556666666655422211 12 35666666665544321112223445566666666655 22221
Q ss_pred HHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380 348 SLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD 390 (434)
Q Consensus 348 ~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~ 390 (434)
....+..+++|+.|++++|.+...... ....+|+.|++++|.
T Consensus 489 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 489 -SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred -ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 111124556666666666655221111 112356666666654
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.37 E-value=1.2e-12 Score=130.91 Aligned_cols=229 Identities=12% Similarity=0.008 Sum_probs=156.6
Q ss_pred cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccce
Q 046380 110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
.+++++|+++.+. ...+| +....+ |++|++++|.+.. + ....+++|++|++++
T Consensus 63 l~~L~~L~Ls~n~--------l~~~~--~~~l~~-L~~L~Ls~N~l~~--------~--~~~~l~~L~~L~L~~------ 115 (457)
T 3bz5_A 63 LTGLTKLICTSNN--------ITTLD--LSQNTN-LTYLACDSNKLTN--------L--DVTPLTKLTYLNCDT------ 115 (457)
T ss_dssp CTTCSEEECCSSC--------CSCCC--CTTCTT-CSEEECCSSCCSC--------C--CCTTCTTCCEEECCS------
T ss_pred cCCCCEEEccCCc--------CCeEc--cccCCC-CCEEECcCCCCce--------e--ecCCCCcCCEEECCC------
Confidence 3799999998776 33344 334455 9999999998843 1 367899999999999
Q ss_pred EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
..+..+. +..+++|++|.+++|..... -...+++|+.|+++++...... .+..+++|+.|++++
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSF 179 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCS
T ss_pred CcCCeec--CCCCCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCC
Confidence 5552222 67899999999999987332 1346789999999866322111 256789999999999
Q ss_pred cccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380 270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS 348 (434)
Q Consensus 270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~ 348 (434)
|.++.+|. ..+++|+.|.++++.- ..+.+ .+++|+.|+++++... ++. ...+++|++|.++++ .++...
T Consensus 180 n~l~~l~l----~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls~N~l~--~ip--~~~l~~L~~L~l~~N-~l~~~~ 249 (457)
T 3bz5_A 180 NKITELDV----SQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCSSNKLT--EID--VTPLTQLTYFDCSVN-PLTELD 249 (457)
T ss_dssp SCCCCCCC----TTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred Cccceecc----ccCCCCCEEECcCCcC-CeeccccCCCCCEEECcCCccc--ccC--ccccCCCCEEEeeCC-cCCCcC
Confidence 99988873 3588999999998753 33356 7899999999998754 332 667899999999988 343321
Q ss_pred HHHHHhcCCccceEEeeccccc---------cccccc-cccccceeEeccCCcccee
Q 046380 349 LEELISACILLENLYLNSCAIP---------KGHLEI-YSLTLKTLVVHGCDHLHFA 395 (434)
Q Consensus 349 l~~l~~~~p~Le~L~l~~~~~~---------~~~~~~-~~~~L~~L~l~~c~~l~~~ 395 (434)
...+++|+.|+++.+... .+.+.. ...+|+.|++++|..+..+
T Consensus 250 ----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 250 ----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp ----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred ----HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCccccee
Confidence 235565555544443321 111111 2256666666666554433
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=9.1e-13 Score=137.28 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=90.2
Q ss_pred CCCeEEEEEeecCCCCCCCCccc------------------cccccc--cCCCceeEEEEeeeee-cccccccccccccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYA------------------LPRVIF--SSGSFLVSLTIRHCKI-GAYQKNTVMGLTLS 169 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~------------------lp~~~~--~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~ 169 (434)
+++++|+++.+. ... +|..+. ...+ |++|+|++|.+ .. +|..
T Consensus 206 ~~L~~L~Ls~n~--------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~-L~~L~L~~n~l~~~--------~p~~ 268 (636)
T 4eco_A 206 TKLRQFYMGNSP--------FVAENICEAWENENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNLTK--------LPTF 268 (636)
T ss_dssp TTCCEEEEESCC--------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEECCTTCSS--------CCTT
T ss_pred cCCCEEECcCCc--------cccccccccccccccchhcccCchhhhhcccCC-CCEEEecCCcCCcc--------ChHH
Confidence 799999999776 222 888877 7777 99999999987 32 3567
Q ss_pred cccCcccceEEEeeecccceEe-e-C-hHHHHHh------cCCCcceeeeccccCCCCcccccccccce--eeccCCcee
Q 046380 170 NFFNPSVRRLVVRGCMALQGFE-M-D-APRLNYF------QCSGIRDFDEAFVYRPDHFCCRFLEFKVA--NENSMSSLE 238 (434)
Q Consensus 170 ~~~~~~L~~L~L~~c~~~~~~~-~-~-~l~~~~~------~cp~L~~L~l~~~~~~~~~~~~~l~~~~~--~~~~~p~L~ 238 (434)
...+++|++|++++ +. + + .+...+. .+++|++|.+++|..... +. ....+++|+
T Consensus 269 l~~l~~L~~L~Ls~------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i---------p~~~~l~~l~~L~ 333 (636)
T 4eco_A 269 LKALPEMQLINVAC------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF---------PVETSLQKMKKLG 333 (636)
T ss_dssp TTTCSSCCEEECTT------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC---------CCHHHHTTCTTCC
T ss_pred HhcCCCCCEEECcC------CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc---------CchhhhccCCCCC
Confidence 78999999999999 43 3 2 3443333 358999999998876422 22 223445555
Q ss_pred EEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC-ccEEEeecC
Q 046380 239 TLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK-LKLVRMENC 295 (434)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~l~~c 295 (434)
.|+++++...+. +. .+..+++|+.|++++|.+..+|.. ...+++ |++|+++++
T Consensus 334 ~L~L~~N~l~g~-ip-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 334 MLECLYNQLEGK-LP-AFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFAHN 387 (636)
T ss_dssp EEECCSCCCEEE-CC-CCEEEEEESEEECCSSEEEECCTT--SEEECTTCCEEECCSS
T ss_pred EEeCcCCcCccc-hh-hhCCCCCCCEEECCCCccccccHh--hhhhcccCcEEEccCC
Confidence 555554332210 00 234445555555555554444432 123344 555555544
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.37 E-value=7.4e-13 Score=137.08 Aligned_cols=241 Identities=17% Similarity=0.056 Sum_probs=172.9
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|++..+. ...+|. + ...+ |++|++++|.. .. .....+++|++|++++
T Consensus 307 ~~L~~L~l~~n~--------l~~lp~-~-~l~~-L~~L~l~~n~~~~~----------~~~~~l~~L~~L~ls~------ 359 (606)
T 3vq2_A 307 FKWQSLSIIRCQ--------LKQFPT-L-DLPF-LKSLTLTMNKGSIS----------FKKVALPSLSYLDLSR------ 359 (606)
T ss_dssp CCCSEEEEESCC--------CSSCCC-C-CCSS-CCEEEEESCSSCEE----------CCCCCCTTCCEEECCS------
T ss_pred ccCCEEEccccc--------Cccccc-C-CCCc-cceeeccCCcCccc----------hhhccCCCCCEEECcC------
Confidence 689999999887 366773 3 5666 99999999954 32 3456899999999998
Q ss_pred Eee-C--hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380 190 FEM-D--APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK 266 (434)
Q Consensus 190 ~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 266 (434)
..+ . .....+..+++|++|++++|... ........+++|+.|+++++..........+..+++|+.|+
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI---------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEE---------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccc---------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 444 2 23566788999999999998762 22333456899999999877665433223567899999999
Q ss_pred eeccccccCCCCcchhhccCccEEEeecCCCCc---ceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCc
Q 046380 267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG---PVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGF 341 (434)
Q Consensus 267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~---~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~ 341 (434)
+++|.+...+.. ....+++|++|++++|.... ...+ .+++|+.|+++++... +. ...+..+++|++|+++++
T Consensus 431 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 431 ISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE--QISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp CTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS
T ss_pred CcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC--ccChhhhcccccCCEEECCCC
Confidence 999988764321 13457899999999885433 1223 6899999999998644 22 123567899999999998
Q ss_pred cCCcHHHHHHHHhcCCccceEEeecccccc--ccccccccccceeEeccCCcc
Q 046380 342 LGLRNKSLEELISACILLENLYLNSCAIPK--GHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~l 392 (434)
.++.. ....+..+++|+.|++++|.+.. ..+.....+|+.|++++++..
T Consensus 508 -~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 508 -NLLFL-DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp -CCSCE-EGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred -cCCCc-CHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 44332 12234678999999999999742 112222236999999987654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=4.3e-13 Score=133.81 Aligned_cols=110 Identities=12% Similarity=-0.038 Sum_probs=61.4
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+++++|+++.+. ....++...|....+|++|+|++|.+... .+.....+++|++|++++ +
T Consensus 54 ~~L~~L~L~~n~-------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~------n 113 (455)
T 3v47_A 54 QDLQFLKVEQQT-------PGLVIRNNTFRGLSSLIILKLDYNQFLQL-------ETGAFNGLANLEVLTLTQ------C 113 (455)
T ss_dssp TTCCEEECCCCS-------TTCEECTTTTTTCTTCCEEECTTCTTCEE-------CTTTTTTCTTCCEEECTT------S
T ss_pred ccccEEECcCCc-------ccceECcccccccccCCEEeCCCCccCcc-------ChhhccCcccCCEEeCCC------C
Confidence 567777776554 22244444343333377777777765210 123456677777777777 4
Q ss_pred ee-ChHHH--HHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEe
Q 046380 191 EM-DAPRL--NYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVL 247 (434)
Q Consensus 191 ~~-~~l~~--~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~ 247 (434)
.+ +.... .+..+++|++|++++|....... ......+++|++|+++++..
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-------ASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-------CGGGGGCTTCCEEECTTCCB
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCc-------ccccCCCCcccEEeCCCCcc
Confidence 44 22222 25667778888887776632200 01134567888888876544
No 28
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=1.9e-13 Score=129.92 Aligned_cols=213 Identities=10% Similarity=-0.019 Sum_probs=94.1
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|+++.+. ...+++..+. ..+ |++|+|++|.+ +. +....+++|++|++++
T Consensus 34 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~----------~~~~~l~~L~~L~Ls~----- 89 (317)
T 3o53_A 34 WNVKELDLSGNP--------LSQISAADLAPFTK-LELLNLSSNVLYET----------LDLESLSTLRTLDLNN----- 89 (317)
T ss_dssp GGCSEEECTTSC--------CCCCCHHHHTTCTT-CCEEECTTSCCEEE----------EEETTCTTCCEEECCS-----
T ss_pred CCCCEEECcCCc--------cCcCCHHHhhCCCc-CCEEECCCCcCCcc----------hhhhhcCCCCEEECcC-----
Confidence 356666665443 2233322222 233 66666666655 22 2245566666666666
Q ss_pred eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+.+..+ ..+++|++|.+++|.... ......++|+.|+++++....... ..+..+++|+.|+++
T Consensus 90 -n~l~~l----~~~~~L~~L~l~~n~l~~-----------~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 90 -NYVQEL----LVGPSIETLHAANNNISR-----------VSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLK 152 (317)
T ss_dssp -SEEEEE----EECTTCCEEECCSSCCSE-----------EEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECT
T ss_pred -Cccccc----cCCCCcCEEECCCCccCC-----------cCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECC
Confidence 333100 123566666666655421 111224555555555443332110 122345555555555
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK 347 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~ 347 (434)
+|.+..++.......+++|++|+++++.--..... .+++|++|+++++... ++...+..+++|++|+++++ .++.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N-~l~~- 228 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN-KLVL- 228 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS-CCCE-
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCC-cccc-
Confidence 55554433211222345555555555432111111 3555555555554322 22222334455555555554 2221
Q ss_pred HHHHHHhcCCccceEEeecccc
Q 046380 348 SLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 348 ~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+...+..+++|+.|++++|.+
T Consensus 229 -l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 229 -IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -ECTTCCCCTTCCEEECTTCCC
T ss_pred -hhhHhhcCCCCCEEEccCCCc
Confidence 111123445555555555554
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.36 E-value=1.8e-13 Score=142.68 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=80.8
Q ss_pred CceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccc-cCCCCcchhhccCccEEEeecCCCCcce--ee-cCCc-cc
Q 046380 235 SSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFG-KLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPN-LE 309 (434)
Q Consensus 235 p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~-L~ 309 (434)
++|+.|+++++..........+..+++|+.|++++|.+. .+|. ...+++|++|+++++.-. .+ .+ .+++ |+
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~---~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA---FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCC---CEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhh---hCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence 666666666554442111114556666666666666665 5551 234556666666665311 11 12 4566 77
Q ss_pred EEEeccccCcccceeecCC--CCCCccEEEEcCccCCcHHHHHHHHh-------cCCccceEEeecccccccccc--ccc
Q 046380 310 TFVYKAGHGEIASFHFGGR--GFGNIKTLAVNGFLGLRNKSLEELIS-------ACILLENLYLNSCAIPKGHLE--IYS 378 (434)
Q Consensus 310 ~L~l~~~~~~~~~~~~~~~--~~~~Lk~L~l~~~~~~~~~~l~~l~~-------~~p~Le~L~l~~~~~~~~~~~--~~~ 378 (434)
+|+++++... .+..... .+++|++|+++++ .+..... .-+. .+++|+.|++++|.+..-... ...
T Consensus 381 ~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 381 NLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYN-EIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456 (636)
T ss_dssp EEECCSSCCS--SCCSCCCTTCSSCEEEEECCSS-CTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred EEEccCCcCc--ccchhhhhcccCccCEEECcCC-cCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence 7777776533 2222222 2447888888777 3332111 0011 456888888888887321111 124
Q ss_pred cccceeEeccCCcc
Q 046380 379 LTLKTLVVHGCDHL 392 (434)
Q Consensus 379 ~~L~~L~l~~c~~l 392 (434)
.+|+.|++++|..-
T Consensus 457 ~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 457 SPLSSINLMGNMLT 470 (636)
T ss_dssp CCCSEEECCSSCCS
T ss_pred CCCCEEECCCCCCC
Confidence 67888888888544
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=1e-12 Score=125.49 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=97.6
Q ss_pred eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR 222 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~ 222 (434)
|++|+++++.+.. +++ .+..+++|++|++++ ..+ +.....+..+++|++|+++++.....
T Consensus 54 l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l---- 115 (330)
T 1xku_A 54 TALLDLQNNKITE--------IKDGDFKNLKNLHTLILIN------NKISKISPGAFAPLVKLERLYLSKNQLKEL---- 115 (330)
T ss_dssp CCEEECCSSCCCC--------BCTTTTTTCTTCCEEECCS------SCCCCBCTTTTTTCTTCCEEECCSSCCSBC----
T ss_pred CeEEECCCCcCCE--------eChhhhccCCCCCEEECCC------CcCCeeCHHHhcCCCCCCEEECCCCcCCcc----
Confidence 6666666665521 112 345666666666665 333 22223345566666666666654211
Q ss_pred cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC-cchhhccCccEEEeecCCCCcce
Q 046380 223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS-LSSAILKKLKLVRMENCRFDGPV 301 (434)
Q Consensus 223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~c~~l~~~ 301 (434)
.. ...++|++|+++++...... ...+..+++|+.|+++++.+...+.. .....+++|++|+++++.--...
T Consensus 116 -----~~--~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 116 -----PE--KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp -----CS--SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred -----Ch--hhcccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 00 11255666666554433221 11345556666666666554321100 01233556666666554321111
Q ss_pred eecCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-cccc
Q 046380 302 EIHSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE-IYSL 379 (434)
Q Consensus 302 ~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~~~~ 379 (434)
....++|++|+++++... +. ...+..+++|++|+++++ .++.... ..+..+++|+.|++++|.+..-... ....
T Consensus 188 ~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 263 (330)
T 1xku_A 188 QGLPPSLTELHLDGNKIT--KVDAASLKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHK 263 (330)
T ss_dssp SSCCTTCSEEECTTSCCC--EECTGGGTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred ccccccCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCC-cCceeCh-hhccCCCCCCEEECCCCcCccCChhhccCC
Confidence 112356666666554422 11 112344556666666555 2221110 1123456666666666654210000 1124
Q ss_pred ccceeEeccCC
Q 046380 380 TLKTLVVHGCD 390 (434)
Q Consensus 380 ~L~~L~l~~c~ 390 (434)
+|+.|++++|.
T Consensus 264 ~L~~L~l~~N~ 274 (330)
T 1xku_A 264 YIQVVYLHNNN 274 (330)
T ss_dssp SCCEEECCSSC
T ss_pred CcCEEECCCCc
Confidence 56666666553
No 31
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=3.3e-13 Score=131.90 Aligned_cols=242 Identities=11% Similarity=0.029 Sum_probs=147.8
Q ss_pred CCCeEEEEEeecCCCCCCC--CccccccccccCCCceeEEEEeeeeecccccc---cccccccccccCcccceEEEeeec
Q 046380 111 GKLQKLDLHVRDHVGNSLC--DHYALPRVIFSSGSFLVSLTIRHCKIGAYQKN---TVMGLTLSNFFNPSVRRLVVRGCM 185 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~--~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~l~~~~~~~~~L~~L~L~~c~ 185 (434)
+++++|+++.+. .. ....++..+..+.+ |++|+|++|........ +...+......+++|++|+|++
T Consensus 32 ~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-- 103 (386)
T 2ca6_A 32 DSVKEIVLSGNT-----IGTEAARWLSENIASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD-- 103 (386)
T ss_dssp SCCCEEECTTSE-----ECHHHHHHHHHTTTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS--
T ss_pred CCccEEECCCCC-----CCHHHHHHHHHHHHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC--
Confidence 789999887654 11 01113333444556 99999998754210000 0000011125788999999998
Q ss_pred ccceEee-C----hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccC---------CceeEEEEEeEEeCchh
Q 046380 186 ALQGFEM-D----APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSM---------SSLETLVFSFMVLNDRT 251 (434)
Q Consensus 186 ~~~~~~~-~----~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~---------p~L~~L~l~~~~~~~~~ 251 (434)
+.+ + .+...+..+++|++|++++|....... ..+....... ++|++|+++++...+..
T Consensus 104 ----n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 104 ----NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG----AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp ----CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH----HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ----CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH----HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 666 3 355667889999999999887621100 0001111112 88999999887776544
Q ss_pred HH---HHhccCCCCcEEEeecccccc------CCCCcchhhccCccEEEeecCCCC----cce--ee-cCCcccEEEecc
Q 046380 252 FE---SALSKFSNLETLKLLSSVFGK------LPSSLSSAILKKLKLVRMENCRFD----GPV--EI-HSPNLETFVYKA 315 (434)
Q Consensus 252 ~~---~~~~~~~~L~~L~l~~~~~~~------~p~~~~~~~~~~L~~L~l~~c~~l----~~~--~~-~~p~L~~L~l~~ 315 (434)
.. ..+..+++|+.|++++|.+.. .|. ....+++|++|++++|.-- ..+ .+ .+++|+.|++++
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 44 455688899999999887662 121 1235778899998887531 111 12 578899999888
Q ss_pred ccCcccc---eeecC--CCCCCccEEEEcCccCCcHHHHH----HHHhcCCccceEEeecccccc
Q 046380 316 GHGEIAS---FHFGG--RGFGNIKTLAVNGFLGLRNKSLE----ELISACILLENLYLNSCAIPK 371 (434)
Q Consensus 316 ~~~~~~~---~~~~~--~~~~~Lk~L~l~~~~~~~~~~l~----~l~~~~p~Le~L~l~~~~~~~ 371 (434)
+.....+ +.... ..+++|++|+++++ .++..++. .+..++|+|+.|++++|.+..
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 7644221 11122 34788999999888 67775332 233567899999999888743
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=2.2e-12 Score=137.81 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=130.3
Q ss_pred CCCeEEEEEeecCCCCC-CCCc---------cccccccc--cCCCceeEEEEeeeee-cccccccccccccccccCcccc
Q 046380 111 GKLQKLDLHVRDHVGNS-LCDH---------YALPRVIF--SSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVR 177 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~-~~~~---------~~lp~~~~--~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~ 177 (434)
+++++|+++.+.=.+.. .... ..+|..+. ...+ |++|+|++|.+ .. +|.....+++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~-L~~L~Ls~N~l~~~--------iP~~l~~L~~L~ 518 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD-LTDVELYNCPNMTQ--------LPDFLYDLPELQ 518 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEESCTTCCS--------CCGGGGGCSSCC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC-CCEEECcCCCCCcc--------ChHHHhCCCCCC
Confidence 78999999987610000 0000 02888875 6666 99999999976 32 356678999999
Q ss_pred eEEEeeecccceEeeC-hHHHHH-------hcCCCcceeeeccccCCCCcccccccccce--eeccCCceeEEEEEeEEe
Q 046380 178 RLVVRGCMALQGFEMD-APRLNY-------FQCSGIRDFDEAFVYRPDHFCCRFLEFKVA--NENSMSSLETLVFSFMVL 247 (434)
Q Consensus 178 ~L~L~~c~~~~~~~~~-~l~~~~-------~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~--~~~~~p~L~~L~l~~~~~ 247 (434)
+|+|++|..+. . .+...+ ..+|+|+.|.+++|.... ++. ....+++|+.|+++++..
T Consensus 519 ~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 519 SLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp EEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCC
T ss_pred EEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCc
Confidence 99999832111 1 233322 456699999999987732 222 234567777777766554
Q ss_pred CchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC-ccEEEeecCCCCccee-e---cCCcccEEEeccccCcc--
Q 046380 248 NDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK-LKLVRMENCRFDGPVE-I---HSPNLETFVYKAGHGEI-- 320 (434)
Q Consensus 248 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~l~~c~~l~~~~-~---~~p~L~~L~l~~~~~~~-- 320 (434)
..-. .+..+++|+.|++++|.+..+|.. ...+++ |++|+++++.--.... + ..++|+.|+++++....
T Consensus 586 ~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 586 RHLE---AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CBCC---CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred ccch---hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 4211 456667777777777776666643 234555 7777777654221111 1 12346777766654321
Q ss_pred cceeecCC--CCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 321 ASFHFGGR--GFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 321 ~~~~~~~~--~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
..+..... .+.+|+.|.++++ .++ ..-..++..+++|+.|+|++|.+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N-~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYN-EIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSS-CCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred ccchhhhccccCCCcCEEEccCC-cCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 11111111 2336666666665 333 11223334556666666666554
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.35 E-value=5.9e-13 Score=137.83 Aligned_cols=82 Identities=10% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEe
Q 046380 112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE 191 (434)
Q Consensus 112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~ 191 (434)
+++++++..+. ...++...|....+|++|++++|.+.. +|+....+++|++|++++ +.
T Consensus 255 ~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~--------lp~~l~~l~~L~~L~l~~------n~ 312 (606)
T 3t6q_A 255 SVESINLQKHY--------FFNISSNTFHCFSGLQELDLTATHLSE--------LPSGLVGLSTLKKLVLSA------NK 312 (606)
T ss_dssp EEEEEECTTCC--------CSSCCTTTTTTCTTCSEEECTTSCCSC--------CCSSCCSCTTCCEEECTT------CC
T ss_pred ceeEEEeecCc--------cCccCHHHhccccCCCEEeccCCccCC--------CChhhcccccCCEEECcc------CC
Confidence 55666665443 344444444433337777777666522 234455666777777766 43
Q ss_pred e-ChHHHHHhcCCCcceeeeccccC
Q 046380 192 M-DAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 192 ~-~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
+ +.....+..+++|++|.+++|..
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred cCcCchhhhhccCcCCEEECCCCCc
Confidence 3 22233455566666666666644
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.35 E-value=1.3e-12 Score=130.34 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=60.3
Q ss_pred CCCeEEEEEeecCCCCCCCCcccc-ccccccCCCceeEEEEeeeeecccccccccccccc--cccCcccceEEEeeeccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYAL-PRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS--NFFNPSVRRLVVRGCMAL 187 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~l-p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~L~~c~~~ 187 (434)
+++++|+++.+. ...+ |..+....+ |++|+|++|.+.. .++.. ...+++|++|+|++
T Consensus 79 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~-L~~L~L~~n~l~~-------~~~~~~~~~~l~~L~~L~L~~---- 138 (455)
T 3v47_A 79 SSLIILKLDYNQ--------FLQLETGAFNGLAN-LEVLTLTQCNLDG-------AVLSGNFFKPLTSLEMLVLRD---- 138 (455)
T ss_dssp TTCCEEECTTCT--------TCEECTTTTTTCTT-CCEEECTTSCCBT-------HHHHSSTTTTCTTCCEEECCS----
T ss_pred ccCCEEeCCCCc--------cCccChhhccCccc-CCEEeCCCCCCCc-------cccCcccccCcccCCEEECCC----
Confidence 789999998765 3444 444444555 9999999998721 00122 66899999999998
Q ss_pred ceEee-C-hHHHHHhcCCCcceeeeccccCCC
Q 046380 188 QGFEM-D-APRLNYFQCSGIRDFDEAFVYRPD 217 (434)
Q Consensus 188 ~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~ 217 (434)
..+ + ....++.++++|++|++++|....
T Consensus 139 --n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 139 --NNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp --SBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred --CccCccCcccccCCCCcccEEeCCCCcccc
Confidence 555 3 233457889999999999987643
No 35
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=1.2e-13 Score=137.99 Aligned_cols=278 Identities=12% Similarity=0.057 Sum_probs=179.1
Q ss_pred CCeEEEEEeecCCCCCCCC--ccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccc
Q 046380 112 KLQKLDLHVRDHVGNSLCD--HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 112 ~l~~L~l~~~~~~~~~~~~--~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~ 188 (434)
++++|+++.+. ... ...+|..+..+.+ |++|++++|.+... ....+... ....++|++|++++
T Consensus 86 ~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~---~~~~l~~~l~~~~~~L~~L~L~~----- 151 (461)
T 1z7x_W 86 KIQKLSLQNCC-----LTGAGCGVLSSTLRTLPT-LQELHLSDNLLGDA---GLQLLCEGLLDPQCRLEKLQLEY----- 151 (461)
T ss_dssp CCCEEECTTSC-----CBGGGHHHHHHHTTSCTT-CCEEECCSSBCHHH---HHHHHHHHHTSTTCCCCEEECTT-----
T ss_pred ceeEEEccCCC-----CCHHHHHHHHHHHccCCc-eeEEECCCCcCchH---HHHHHHHHHhcCCCcceEEECCC-----
Confidence 69999997765 111 1245666666676 99999999987210 00001011 22356899999999
Q ss_pred eEee-C----hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchh---HHHHhccCC
Q 046380 189 GFEM-D----APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRT---FESALSKFS 260 (434)
Q Consensus 189 ~~~~-~----~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~~~~ 260 (434)
+.+ + .+...+..+++|++|++++|...+... . .....+....++|++|+++++...+.. +...+..++
T Consensus 152 -n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 152 -CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV-R--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp -SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-H--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred -CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH-H--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 555 2 456667889999999999987522100 0 000111123569999999988776643 344567899
Q ss_pred CCcEEEeeccccccCCCCcch----hhccCccEEEeecCCCCcce-------ee-cCCcccEEEeccccCccccee---e
Q 046380 261 NLETLKLLSSVFGKLPSSLSS----AILKKLKLVRMENCRFDGPV-------EI-HSPNLETFVYKAGHGEIASFH---F 325 (434)
Q Consensus 261 ~L~~L~l~~~~~~~~p~~~~~----~~~~~L~~L~l~~c~~l~~~-------~~-~~p~L~~L~l~~~~~~~~~~~---~ 325 (434)
+|+.|++++|.+......... ..+++|++|++++|. +... .+ .+++|++|+++++.....+.. .
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 999999999976543210001 136799999999984 3331 12 489999999999764322211 1
Q ss_pred -cCCCCCCccEEEEcCccCCcHH---HHHHHHhcCCccceEEeeccccccccccc-------cccccceeEeccCCccc-
Q 046380 326 -GGRGFGNIKTLAVNGFLGLRNK---SLEELISACILLENLYLNSCAIPKGHLEI-------YSLTLKTLVVHGCDHLH- 393 (434)
Q Consensus 326 -~~~~~~~Lk~L~l~~~~~~~~~---~l~~l~~~~p~Le~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~~l~- 393 (434)
.....++|++|.++++ .++.. .+...+..+++|+.|++++|.+....... ...+|+.|++++|..-+
T Consensus 307 ~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 385 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh
Confidence 1123469999999999 56655 45566678999999999999874422221 14589999999996442
Q ss_pred ---eee---EecCceEEEEEee
Q 046380 394 ---FAE---IQAPQLLYFQYVG 409 (434)
Q Consensus 394 ---~~~---i~~~~l~~~~~~~ 409 (434)
.+. ...+++..+.+.+
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCS
T ss_pred hHHHHHHHHHhCCCccEEECCC
Confidence 111 1246777777655
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.34 E-value=5.6e-13 Score=137.98 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=7.7
Q ss_pred cCCccceEEeecccc
Q 046380 355 ACILLENLYLNSCAI 369 (434)
Q Consensus 355 ~~p~Le~L~l~~~~~ 369 (434)
.+++|+.|++++|.+
T Consensus 498 ~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRL 512 (606)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred cccCCCEEECCCCcc
Confidence 445555555555544
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=5.3e-13 Score=134.54 Aligned_cols=213 Identities=10% Similarity=-0.020 Sum_probs=123.3
Q ss_pred CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceE
Q 046380 112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
++++|+++.+. ...+++..+....+|++|+|++|.+ +. +....+++|++|+|++ +
T Consensus 35 ~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~l~~l~~L~~L~Ls~------N 90 (487)
T 3oja_A 35 NVKELDLSGNP--------LSQISAADLAPFTKLELLNLSSNVLYET----------LDLESLSTLRTLDLNN------N 90 (487)
T ss_dssp GCCEEECCSSC--------CCCCCGGGGTTCTTCCEEECTTSCCEEE----------EECTTCTTCCEEECCS------S
T ss_pred CccEEEeeCCc--------CCCCCHHHHhCCCCCCEEEeeCCCCCCC----------cccccCCCCCEEEecC------C
Confidence 78888887655 3344443343333388888888876 33 2366788888888887 4
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
.+..+ ...|+|+.|.+++|..... .....++|+.|+++++....... ..+..+++|+.|++++|
T Consensus 91 ~l~~l----~~~~~L~~L~L~~N~l~~~-----------~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 91 YVQEL----LVGPSIETLHAANNNISRV-----------SCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp EEEEE----EECTTCCEEECCSSCCCCE-----------EECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTS
T ss_pred cCCCC----CCCCCcCEEECcCCcCCCC-----------CccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCC
Confidence 44111 1237888888887766322 11235677777776655443211 13455677777777777
Q ss_pred ccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHH
Q 046380 271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSL 349 (434)
Q Consensus 271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l 349 (434)
.+...+.......+++|++|+++++.--..... .+++|+.|+++++..+ ++...+..+++|+.|+++++ .++. +
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N-~l~~--l 229 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN-KLVL--I 229 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS-CCCE--E
T ss_pred CCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCC-cCcc--c
Confidence 666543222223466777777777643222222 4677777777766533 23233455667777777766 3331 2
Q ss_pred HHHHhcCCccceEEeecccc
Q 046380 350 EELISACILLENLYLNSCAI 369 (434)
Q Consensus 350 ~~l~~~~p~Le~L~l~~~~~ 369 (434)
+..+..+++|+.|++++|.+
T Consensus 230 p~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCB
T ss_pred chhhccCCCCCEEEcCCCCC
Confidence 22234566777777777665
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=1.3e-12 Score=139.50 Aligned_cols=255 Identities=12% Similarity=0.049 Sum_probs=152.9
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccc--ccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPR--VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|+++.+. ...+|. .+....+ |+.|+|++|.+.. + |....+++|++|+|++
T Consensus 548 ~~L~~L~Ls~N~--------L~~ip~~~~l~~L~~-L~~L~Ls~N~l~~--------l-p~~~~L~~L~~L~Ls~----- 604 (876)
T 4ecn_A 548 PKIQIFYMGYNN--------LEEFPASASLQKMVK-LGLLDCVHNKVRH--------L-EAFGTNVKLTDLKLDY----- 604 (876)
T ss_dssp TTCCEEECCSSC--------CCBCCCHHHHTTCTT-CCEEECTTSCCCB--------C-CCCCTTSEESEEECCS-----
T ss_pred CCccEEEeeCCc--------CCccCChhhhhcCCC-CCEEECCCCCccc--------c-hhhcCCCcceEEECcC-----
Confidence 478888877655 336776 5555555 8888888887632 2 3666778888888887
Q ss_pred eEeeChHHHHHhcCCC-cceeeeccccCCCCcc----cc--cccc-------c----c-----eeeccCCceeEEEEEeE
Q 046380 189 GFEMDAPRLNYFQCSG-IRDFDEAFVYRPDHFC----CR--FLEF-------K----V-----ANENSMSSLETLVFSFM 245 (434)
Q Consensus 189 ~~~~~~l~~~~~~cp~-L~~L~l~~~~~~~~~~----~~--~l~~-------~----~-----~~~~~~p~L~~L~l~~~ 245 (434)
+.+..+...+..+++ |++|.+++|....... .. .+.. + + ......++|+.|+++++
T Consensus 605 -N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 605 -NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp -SCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred -CccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 333122233566777 8888888876543211 00 0000 0 0 01113347778877766
Q ss_pred EeCchhHHHHhccCCCCcEEEeeccccccCCCCcch------hhccCccEEEeecCCCCc--ceee--cCCcccEEEecc
Q 046380 246 VLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS------AILKKLKLVRMENCRFDG--PVEI--HSPNLETFVYKA 315 (434)
Q Consensus 246 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~------~~~~~L~~L~l~~c~~l~--~~~~--~~p~L~~L~l~~ 315 (434)
...... ..+...+++|+.|++++|.+..+|..... ..+++|++|++++|.--. .... .+++|+.|++++
T Consensus 684 ~L~~lp-~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 684 EIQKFP-TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCCSCC-HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS
T ss_pred cCCccC-HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC
Confidence 555321 22345778888888888888777764322 123488888888774221 1111 468888888888
Q ss_pred ccCcccceeecCCCCCCccEEEEcCccCCcH----HHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCc
Q 046380 316 GHGEIASFHFGGRGFGNIKTLAVNGFLGLRN----KSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDH 391 (434)
Q Consensus 316 ~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~----~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 391 (434)
+... +++.....+++|+.|.++++...+. ..++.-+..+++|+.|+|++|.+ ..-.....++|+.|++++|+.
T Consensus 763 N~L~--~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 763 NCFS--SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp SCCS--SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred CCCC--ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 7644 3444456778888888876321111 11222335788888888888887 322222346888888888875
Q ss_pred cc
Q 046380 392 LH 393 (434)
Q Consensus 392 l~ 393 (434)
.+
T Consensus 840 ~~ 841 (876)
T 4ecn_A 840 IS 841 (876)
T ss_dssp CE
T ss_pred Cc
Confidence 53
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=5.9e-13 Score=132.50 Aligned_cols=222 Identities=14% Similarity=0.061 Sum_probs=116.3
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
++++.|+++.+. ...++...|....+|++|+|++|.+.. ++ ..+.++++|++|+|++
T Consensus 64 ~~l~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------i~~~~~~~l~~L~~L~L~~------ 121 (440)
T 3zyj_A 64 TNTRLLNLHENQ--------IQIIKVNSFKHLRHLEILQLSRNHIRT--------IEIGAFNGLANLNTLELFD------ 121 (440)
T ss_dssp TTCSEEECCSCC--------CCEECTTTTSSCSSCCEEECCSSCCCE--------ECGGGGTTCSSCCEEECCS------
T ss_pred CCCcEEEccCCc--------CCeeCHHHhhCCCCCCEEECCCCcCCc--------cChhhccCCccCCEEECCC------
Confidence 456666665544 334443333332337777777766521 11 2344667777777766
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+.+ +.....+..+++|++|++++|..... .......+++|+.|+++++..........+..+++|+.|+++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESI--------PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEE--------CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccccc--------CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 333 22222345567777777776655211 011123456777777665221111111134567777777777
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCC
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGL 344 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~ 344 (434)
+|.++.+|. ...+++|++|+++++.-... -.+ .+++|+.|.+.++... .+. ..+..+++|++|+++++ .+
T Consensus 194 ~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N-~l 267 (440)
T 3zyj_A 194 MCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ--VIERNAFDNLQSLVEINLAHN-NL 267 (440)
T ss_dssp TSCCSSCCC---CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTSSTTCTTCCEEECTTS-CC
T ss_pred CCcCccccc---cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee--EEChhhhcCCCCCCEEECCCC-CC
Confidence 777766664 33466777777776532111 122 4677777777665532 111 12445667777777766 33
Q ss_pred cHHHHHHHHhcCCccceEEeecccc
Q 046380 345 RNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 345 ~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+.. ....+..+++|+.|+|++++.
T Consensus 268 ~~~-~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 268 TLL-PHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCC-CTTTTSSCTTCCEEECCSSCE
T ss_pred Ccc-ChhHhccccCCCEEEcCCCCc
Confidence 211 112234567777777776553
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=5.5e-13 Score=133.16 Aligned_cols=195 Identities=16% Similarity=0.048 Sum_probs=86.2
Q ss_pred eeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR 222 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~ 222 (434)
|++|+|++|.+.. ++ ..+.++++|++|+|++ ..+ ......+..+++|++|++++|.....
T Consensus 101 L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---- 162 (452)
T 3zyi_A 101 LEVLQLGRNSIRQ--------IEVGAFNGLASLNTLELFD------NWLTVIPSGAFEYLSKLRELWLRNNPIESI---- 162 (452)
T ss_dssp CCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS------SCCSBCCTTTSSSCTTCCEEECCSCCCCEE----
T ss_pred CCEEECCCCccCC--------cChhhccCcccCCEEECCC------CcCCccChhhhcccCCCCEEECCCCCccee----
Confidence 6666666655411 11 2334556666666665 333 11122344556666666665554211
Q ss_pred cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--
Q 046380 223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP-- 300 (434)
Q Consensus 223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~-- 300 (434)
.......+++|++|+++++..........+..+++|+.|++++|.+..+|. ...+++|++|+++++.-...
T Consensus 163 ----~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 163 ----PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp ----CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC---CTTCTTCCEEECTTSCCSEECG
T ss_pred ----CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc---ccccccccEEECcCCcCcccCc
Confidence 001122345556655554211110001123455666666666665555543 22345566666555432111
Q ss_pred eee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccc
Q 046380 301 VEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCA 368 (434)
Q Consensus 301 ~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 368 (434)
..+ .+++|+.|.++++... .. ...+..+++|++|+++++ .++.. ....+..+++|+.|+|++++
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVS--LIERNAFDGLASLVELNLAHN-NLSSL-PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS-CCSCC-CTTSSTTCTTCCEEECCSSC
T ss_pred ccccCccCCCEEEeCCCcCc--eECHHHhcCCCCCCEEECCCC-cCCcc-ChHHhccccCCCEEEccCCC
Confidence 112 3555666665554422 11 112344555666665555 22211 11112345556666655543
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.33 E-value=4.1e-11 Score=121.61 Aligned_cols=254 Identities=11% Similarity=0.040 Sum_probs=141.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+++++|+++.+. ...+|.. ...+ |++|++++|.+.. ..+|.....+++|++|++++ .
T Consensus 69 ~~L~~L~Ls~N~--------l~~lp~~--~l~~-L~~L~L~~N~l~~------~~~p~~~~~l~~L~~L~L~~------n 125 (520)
T 2z7x_B 69 QELEYLDLSHNK--------LVKISCH--PTVN-LKHLDLSFNAFDA------LPICKEFGNMSQLKFLGLST------T 125 (520)
T ss_dssp TTCCEEECCSSC--------CCEEECC--CCCC-CSEEECCSSCCSS------CCCCGGGGGCTTCCEEEEEE------S
T ss_pred cCCCEEecCCCc--------eeecCcc--ccCC-ccEEeccCCcccc------ccchhhhccCCcceEEEecC------c
Confidence 567777776554 3355555 3444 7777777776621 01234566777888888877 3
Q ss_pred eeChHHHHHhcCCCc--ceeeeccccC--CCCc--c-----------------------------cccccccc-------
Q 046380 191 EMDAPRLNYFQCSGI--RDFDEAFVYR--PDHF--C-----------------------------CRFLEFKV------- 228 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L--~~L~l~~~~~--~~~~--~-----------------------------~~~l~~~~------- 228 (434)
.+.. ..+..+++| ++|.+.+|.. .... . +..++...
T Consensus 126 ~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 203 (520)
T 2z7x_B 126 HLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203 (520)
T ss_dssp SCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred ccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence 3311 123445666 7777777654 1100 0 00000000
Q ss_pred ----------eeeccCCceeEEEEEeEEeCchhHHHHh--ccCCCCcEEEeeccccc-cCCCCcch---hhcc-------
Q 046380 229 ----------ANENSMSSLETLVFSFMVLNDRTFESAL--SKFSNLETLKLLSSVFG-KLPSSLSS---AILK------- 285 (434)
Q Consensus 229 ----------~~~~~~p~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~-~~p~~~~~---~~~~------- 285 (434)
.....+++|+.|++++....+....... ...++|+.|++++|.+. .+|..+.. ..++
T Consensus 204 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l 283 (520)
T 2z7x_B 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283 (520)
T ss_dssp TTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred cccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccc
Confidence 0112355666666666655544333222 13468888888888776 45553210 1222
Q ss_pred -------------------CccEEEeecCCCCccee-ecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCc
Q 046380 286 -------------------KLKLVRMENCRFDGPVE-IHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLR 345 (434)
Q Consensus 286 -------------------~L~~L~l~~c~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~ 345 (434)
+|+.|+++++....... -.+++|++|+++++.... ........+++|++|.++++ .++
T Consensus 284 ~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N-~l~ 361 (520)
T 2z7x_B 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMN-QLK 361 (520)
T ss_dssp EECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSS-CCC
T ss_pred cccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCC-ccC
Confidence 35555555543222111 257889999988876441 12234567889999999988 444
Q ss_pred H-HHHHHHHhcCCccceEEeeccccccccc---cccccccceeEeccCCc
Q 046380 346 N-KSLEELISACILLENLYLNSCAIPKGHL---EIYSLTLKTLVVHGCDH 391 (434)
Q Consensus 346 ~-~~l~~l~~~~p~Le~L~l~~~~~~~~~~---~~~~~~L~~L~l~~c~~ 391 (434)
. ..+...+..+++|+.|++++|.+..... .....+|+.|++++|..
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 3 3455666789999999999988732111 11235677777777643
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.32 E-value=7.7e-13 Score=140.87 Aligned_cols=253 Identities=17% Similarity=0.109 Sum_probs=154.8
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccc--ccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeeccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPR--VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMAL 187 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~ 187 (434)
+++++|+++.+. ....+|. .+..+.+ |++|+|++|.+.. .++.. ...+++|++|++++
T Consensus 100 ~~L~~L~Ls~n~-------l~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~-------~~~~~~~~~l~~L~~L~Ls~---- 160 (768)
T 3rgz_A 100 ASLTSLDLSRNS-------LSGPVTTLTSLGSCSG-LKFLNVSSNTLDF-------PGKVSGGLKLNSLEVLDLSA---- 160 (768)
T ss_dssp TTCCEEECCSSE-------EEEEGGGGGGGGGCTT-CCEEECCSSEEEC-------CSSCCSCCCCTTCSEEECCS----
T ss_pred CCCCEEECCCCc-------CCCcCCChHHHhCCCC-CCEEECcCCccCC-------cCCHHHhccCCCCCEEECCC----
Confidence 688888887655 2234555 5556666 9999999887721 01122 26788888998888
Q ss_pred ceEee-C-hHH--HHHhcCCCcceeeeccccCCCCcc---cccc----------cccceeeccCCceeEEEEEeEEeCch
Q 046380 188 QGFEM-D-APR--LNYFQCSGIRDFDEAFVYRPDHFC---CRFL----------EFKVANENSMSSLETLVFSFMVLNDR 250 (434)
Q Consensus 188 ~~~~~-~-~l~--~~~~~cp~L~~L~l~~~~~~~~~~---~~~l----------~~~~~~~~~~p~L~~L~l~~~~~~~~ 250 (434)
+.+ + ... ..+.++++|++|++++|....... +..+ .........+++|++|+++++...+.
T Consensus 161 --n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 161 --NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp --SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC
T ss_pred --CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc
Confidence 444 3 211 226778888888888776532111 1111 11111134567777777776655432
Q ss_pred hHHHHhccCCCCcEEEeecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-c-CCcccEEEeccccCcccceee
Q 046380 251 TFESALSKFSNLETLKLLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-H-SPNLETFVYKAGHGEIASFHF 325 (434)
Q Consensus 251 ~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~-~p~L~~L~l~~~~~~~~~~~~ 325 (434)
....+..+++|+.|++++|.+.. +|.. .+++|++|++++|.....+ .+ . +++|++|+++++.... ....
T Consensus 239 -~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-~~p~ 312 (768)
T 3rgz_A 239 -FSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-AVPP 312 (768)
T ss_dssp -HHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-CCCG
T ss_pred -ccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-ccch
Confidence 23356778888888888887654 3431 5778888888876432111 12 2 5888888888865321 1223
Q ss_pred cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccc---ccccccccceeEeccCCc
Q 046380 326 GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGH---LEIYSLTLKTLVVHGCDH 391 (434)
Q Consensus 326 ~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~ 391 (434)
.+..+++|++|+++++ .+....-...+..+++|+.|++++|.+.... +.....+|+.|++++|..
T Consensus 313 ~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 313 FFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp GGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred HHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence 4567889999999887 3332222233468899999999999873211 111223899999998753
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.32 E-value=9.5e-12 Score=127.12 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHH---HhccCCCCcEEEeeccc
Q 046380 198 NYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFES---ALSKFSNLETLKLLSSV 271 (434)
Q Consensus 198 ~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 271 (434)
....+++|+.|++++|........ ........++|+.|.+++....+..... .+..+++|+.|++.+|.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 191 FADILSSVRYLELRDTNLARFQFS-----PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp HHHSTTTBSEEEEESCBCTTCCCC-----CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hHhhcccccEEEccCCcccccccc-----ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 345688888888888776432100 0011123456666666655544433221 22445555555555554
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=2.1e-12 Score=128.44 Aligned_cols=231 Identities=10% Similarity=0.032 Sum_probs=159.5
Q ss_pred CccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380 130 DHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD 207 (434)
Q Consensus 130 ~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~ 207 (434)
....+|..+.. . ++.|+|+++.+.. + +..+..+++|++|+|++ +.+ +.....+.++++|++
T Consensus 54 ~l~~iP~~~~~--~-l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~Ls~------n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 54 NLREVPDGIST--N-TRLLNLHENQIQI--------IKVNSFKHLRHLEILQLSR------NHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp CCSSCCSCCCT--T-CSEEECCSCCCCE--------ECTTTTSSCSSCCEEECCS------SCCCEECGGGGTTCSSCCE
T ss_pred CcCcCCCCCCC--C-CcEEEccCCcCCe--------eCHHHhhCCCCCCEEECCC------CcCCccChhhccCCccCCE
Confidence 35567766542 3 9999999998822 1 14567899999999998 544 222345678999999
Q ss_pred eeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc-ccccCCCCcchhhccC
Q 046380 208 FDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS-VFGKLPSSLSSAILKK 286 (434)
Q Consensus 208 L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~ 286 (434)
|++++|...... ......+++|++|+++++...... ...+..+++|+.|+++++ .+..++.. ....+++
T Consensus 117 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~ 186 (440)
T 3zyj_A 117 LELFDNRLTTIP--------NGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSN 186 (440)
T ss_dssp EECCSSCCSSCC--------TTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSS
T ss_pred EECCCCcCCeeC--------HhHhhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccc
Confidence 999999764221 112346789999999876554321 124678999999999985 44445432 1345789
Q ss_pred ccEEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEe
Q 046380 287 LKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYL 364 (434)
Q Consensus 287 L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l 364 (434)
|++|+++++.--....+ .+++|++|+++++... .+ ...+..+++|++|.++++ .+.... ...+..+++|+.|+|
T Consensus 187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS--AIRPGSFQGLMHLQKLWMIQS-QIQVIE-RNAFDNLQSLVEINL 262 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTC-CCCEEC-TTSSTTCTTCCEEEC
T ss_pred cCeecCCCCcCccccccCCCcccCEEECCCCccC--ccChhhhccCccCCEEECCCC-ceeEEC-hhhhcCCCCCCEEEC
Confidence 99999998854333344 6899999999998643 22 234577899999999988 443221 122357899999999
Q ss_pred ecccccccccc--ccccccceeEeccCCc
Q 046380 365 NSCAIPKGHLE--IYSLTLKTLVVHGCDH 391 (434)
Q Consensus 365 ~~~~~~~~~~~--~~~~~L~~L~l~~c~~ 391 (434)
++|.+..-... ....+|+.|++++++.
T Consensus 263 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99987432211 2246899999998864
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.31 E-value=2e-12 Score=129.02 Aligned_cols=231 Identities=13% Similarity=0.030 Sum_probs=158.2
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFD 209 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~ 209 (434)
...+|..+. .+ |++|+|+++.+... .+..+..+++|++|+|++ +.+ +.....+.++++|++|+
T Consensus 66 l~~iP~~~~--~~-l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 66 LSEVPQGIP--SN-TRYLNLMENNIQMI-------QADTFRHLHHLEVLQLGR------NSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp CSSCCSCCC--TT-CSEEECCSSCCCEE-------CTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCTTCCEEE
T ss_pred cCccCCCCC--CC-ccEEECcCCcCceE-------CHHHcCCCCCCCEEECCC------CccCCcChhhccCcccCCEEE
Confidence 455666544 23 99999999987220 024567899999999998 554 22234567899999999
Q ss_pred eccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc-ccccCCCCcchhhccCcc
Q 046380 210 EAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS-VFGKLPSSLSSAILKKLK 288 (434)
Q Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~L~ 288 (434)
+++|..... .......+++|++|+++++...... ...+..+++|+.|+++++ .++.+|.. ....+++|+
T Consensus 130 L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~ 199 (452)
T 3zyi_A 130 LFDNWLTVI--------PSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLK 199 (452)
T ss_dssp CCSSCCSBC--------CTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCC
T ss_pred CCCCcCCcc--------ChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCC
Confidence 999976322 1112335889999999876654321 124678999999999985 45555532 134578999
Q ss_pred EEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeec
Q 046380 289 LVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNS 366 (434)
Q Consensus 289 ~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~ 366 (434)
+|+++++.--....+ .+++|++|+++++... +. ...+..+++|++|.++++ .+.... ...+..+++|+.|+|++
T Consensus 200 ~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 200 YLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP--EIRPGSFHGLSSLKKLWVMNS-QVSLIE-RNAFDGLASLVELNLAH 275 (452)
T ss_dssp EEECTTSCCSSCCCCTTCTTCCEEECTTSCCS--EECGGGGTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCS
T ss_pred EEECCCCcccccccccccccccEEECcCCcCc--ccCcccccCccCCCEEEeCCC-cCceEC-HHHhcCCCCCCEEECCC
Confidence 999998754433344 6899999999997643 22 234567899999999988 343221 12236789999999999
Q ss_pred ccccccccc--ccccccceeEeccCCc
Q 046380 367 CAIPKGHLE--IYSLTLKTLVVHGCDH 391 (434)
Q Consensus 367 ~~~~~~~~~--~~~~~L~~L~l~~c~~ 391 (434)
|.+..-... ....+|+.|++++++.
T Consensus 276 N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CcCCccChHHhccccCCCEEEccCCCc
Confidence 987431111 2246899999998863
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.31 E-value=4e-12 Score=121.36 Aligned_cols=242 Identities=11% Similarity=0.052 Sum_probs=166.9
Q ss_pred hcCCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecc
Q 046380 109 LRGKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMA 186 (434)
Q Consensus 109 ~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~ 186 (434)
..++++.|+++.+. ...++...+. +.+ |++|+|++|.+.. + +.....+++|++|++++
T Consensus 50 ~~~~l~~L~L~~n~--------i~~~~~~~~~~l~~-L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~--- 109 (330)
T 1xku_A 50 LPPDTALLDLQNNK--------ITEIKDGDFKNLKN-LHTLILINNKISK--------ISPGAFAPLVKLERLYLSK--- 109 (330)
T ss_dssp CCTTCCEEECCSSC--------CCCBCTTTTTTCTT-CCEEECCSSCCCC--------BCTTTTTTCTTCCEEECCS---
T ss_pred CCCCCeEEECCCCc--------CCEeChhhhccCCC-CCEEECCCCcCCe--------eCHHHhcCCCCCCEEECCC---
Confidence 34688999988765 4556664444 455 9999999998732 1 24567899999999998
Q ss_pred cceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCch-hHHHHhccCCCCcEE
Q 046380 187 LQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR-TFESALSKFSNLETL 265 (434)
Q Consensus 187 ~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L 265 (434)
..+..+.. ...++|++|.+++|..... .......+++|+.|+++++..... .....+..+++|+.|
T Consensus 110 ---n~l~~l~~--~~~~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 110 ---NQLKELPE--KMPKTLQELRVHENEITKV--------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp ---SCCSBCCS--SCCTTCCEEECCSSCCCBB--------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred ---CcCCccCh--hhcccccEEECCCCccccc--------CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 44411111 1238999999999876322 111234689999999987765432 222356789999999
Q ss_pred EeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCc
Q 046380 266 KLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGF 341 (434)
Q Consensus 266 ~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~ 341 (434)
+++++.+..+|... +++|++|+++++.--.. ..+ .+++|+.|+++++... ... ..+..+++|++|+++++
T Consensus 177 ~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 177 RIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp ECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC--EECTTTGGGSTTCCEEECCSS
T ss_pred ECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc--eeChhhccCCCCCCEEECCCC
Confidence 99999999888643 47999999998753222 233 6899999999987643 221 13467889999999998
Q ss_pred cCCcHHHHHHHHhcCCccceEEeeccccccccccc--------cccccceeEeccCCcc
Q 046380 342 LGLRNKSLEELISACILLENLYLNSCAIPKGHLEI--------YSLTLKTLVVHGCDHL 392 (434)
Q Consensus 342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~--------~~~~L~~L~l~~c~~l 392 (434)
.++ .+..-+..+++|+.|++++|.+..-.... ....++.|++.+++..
T Consensus 251 -~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 251 -KLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp -CCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred -cCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 444 23233468899999999999874311111 1246778888887653
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.30 E-value=2.3e-12 Score=137.21 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=91.0
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccccccc--CCCceeEEEEeeeeec-ccccccccccccccccCcccceEEEeeeccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS--SGSFLVSLTIRHCKIG-AYQKNTVMGLTLSNFFNPSVRRLVVRGCMAL 187 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~--~~~~L~~L~L~~~~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~ 187 (434)
+++++|+++.+. ....+|..+.. ..+ |++|++++|.+. . +|.....+++|++|++++
T Consensus 368 ~~L~~L~Ls~N~-------l~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~Ls~---- 427 (768)
T 3rgz_A 368 ASLLTLDLSSNN-------FSGPILPNLCQNPKNT-LQELYLQNNGFTGK--------IPPTLSNCSELVSLHLSF---- 427 (768)
T ss_dssp TTCSEEECCSSE-------EEEECCTTTTCSTTCC-CCEEECCSSEEEEE--------CCGGGGGCTTCCEEECCS----
T ss_pred cCCcEEEccCCC-------cCCCcChhhhhcccCC-ccEEECCCCccccc--------cCHHHhcCCCCCEEECcC----
Confidence 488888887654 22334444433 334 778888877762 2 234556777788888777
Q ss_pred ceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380 188 QGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK 266 (434)
Q Consensus 188 ~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 266 (434)
+.+ +.....+..+++|+.|.+.+|..... .......+++|++|+++++...+. ....+..+++|+.|+
T Consensus 428 --N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 428 --NYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--------IPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWIS 496 (768)
T ss_dssp --SEEESCCCGGGGGCTTCCEEECCSSCCCSC--------CCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEE
T ss_pred --CcccCcccHHHhcCCCCCEEECCCCcccCc--------CCHHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEE
Confidence 444 33344456677777777777765321 111223455566665555443321 111344555666666
Q ss_pred eecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccc
Q 046380 267 LLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAG 316 (434)
Q Consensus 267 l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~ 316 (434)
+++|.+.. +|.+ ...+++|+.|++++|.....+ .+ .+++|+.|+++++
T Consensus 497 L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 497 LSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred ccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 66555542 3332 233455555555555332111 12 3555555555443
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.30 E-value=1.3e-11 Score=126.17 Aligned_cols=134 Identities=10% Similarity=0.065 Sum_probs=72.4
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccc-ccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPR-VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|+++.+. ...+++ .+..+.+ |++|++++|.+.. ++ ..+..+++|++|++++
T Consensus 26 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~-L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~----- 83 (549)
T 2z81_A 26 AAMKSLDLSFNK--------ITYIGHGDLRACAN-LQVLILKSSRINT--------IEGDAFYSLGSLEHLDLSD----- 83 (549)
T ss_dssp TTCCEEECCSSC--------CCEECSSTTSSCTT-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTT-----
T ss_pred CCccEEECcCCc--------cCccChhhhhcCCc-ccEEECCCCCcCc--------cChhhccccccCCEEECCC-----
Confidence 567777776654 334433 3333444 8888888876621 11 3456777888888877
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL 267 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 267 (434)
..+ +.....+.++++|++|++++|...... .......+++|++|+++++..........+..+++|+.|++
T Consensus 84 -n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 84 -NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp -SCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred -CccCccCHHHhccCCCCcEEECCCCcccccc-------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 544 334445677788888888877653210 01122345566666665543111100112345555566666
Q ss_pred ecccccc
Q 046380 268 LSSVFGK 274 (434)
Q Consensus 268 ~~~~~~~ 274 (434)
++|.+..
T Consensus 156 ~~n~l~~ 162 (549)
T 2z81_A 156 KALSLRN 162 (549)
T ss_dssp EETTCCE
T ss_pred cCCcccc
Confidence 5554443
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=1.5e-11 Score=127.13 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=92.1
Q ss_pred CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEe
Q 046380 234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVY 313 (434)
Q Consensus 234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l 313 (434)
.++|++|+++++.... +....++|+.|++++|.++.+|. .+++|+.|+++++. +..+.-..++|+.|.+
T Consensus 140 l~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L 208 (622)
T 3g06_A 140 PPGLQELSVSDNQLAS-----LPALPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQ-LASLPTLPSELYKLWA 208 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCC-----cCCccCCCCEEECCCCCCCCCcc-----cCCCCcEEECCCCC-CCCCCCccchhhEEEC
Confidence 3667777666554332 12345667777777776666663 25677777777653 2222234577888877
Q ss_pred ccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCccc
Q 046380 314 KAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLH 393 (434)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 393 (434)
.++... .+. ..+++|++|.++++ .++. +. ..+++|+.|++++|.+. .++....+|+.|++++|.. +
T Consensus 209 ~~N~l~--~l~---~~~~~L~~L~Ls~N-~L~~--lp---~~l~~L~~L~Ls~N~L~--~lp~~~~~L~~L~Ls~N~L-~ 274 (622)
T 3g06_A 209 YNNRLT--SLP---ALPSGLKELIVSGN-RLTS--LP---VLPSELKELMVSGNRLT--SLPMLPSGLLSLSVYRNQL-T 274 (622)
T ss_dssp CSSCCS--SCC---CCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCC-C
T ss_pred cCCccc--ccC---CCCCCCCEEEccCC-ccCc--CC---CCCCcCcEEECCCCCCC--cCCcccccCcEEeCCCCCC-C
Confidence 776533 211 23478899998887 4432 11 56788999999998873 3333567899999998843 3
Q ss_pred eee---EecCceEEEEEee
Q 046380 394 FAE---IQAPQLLYFQYVG 409 (434)
Q Consensus 394 ~~~---i~~~~l~~~~~~~ 409 (434)
.+. ...+++..+...+
T Consensus 275 ~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp SCCGGGGGSCTTCEEECCS
T ss_pred cCCHHHhhccccCEEEecC
Confidence 321 1235566666655
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=1.3e-11 Score=116.78 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=87.5
Q ss_pred CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEE
Q 046380 234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFV 312 (434)
Q Consensus 234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~ 312 (434)
+++|++|+++++...+.. .+..+++|+.|++++|.+..++. ...+++|++|++++|.--....+ .+++|+.|+
T Consensus 106 l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 179 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179 (308)
T ss_dssp CTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChhhcCCCCCCEEE
Confidence 444555544443333321 26788999999999998888764 45688999999998743322225 689999999
Q ss_pred eccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc
Q 046380 313 YKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK 371 (434)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~ 371 (434)
++++... .+. ....+++|++|+++++ .+.... . +..+++|+.|++++|.+..
T Consensus 180 l~~n~l~--~~~-~l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKIS--DIS-PLASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCC--CCG-GGGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccC--cCh-hhcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCeeec
Confidence 9987643 221 2567889999999988 443322 1 4689999999999998743
No 51
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=2.6e-12 Score=125.50 Aligned_cols=251 Identities=13% Similarity=0.084 Sum_probs=158.6
Q ss_pred cccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecc--cceEee-C---hHHHHHhcCCCc
Q 046380 132 YALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMA--LQGFEM-D---APRLNYFQCSGI 205 (434)
Q Consensus 132 ~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~--~~~~~~-~---~l~~~~~~cp~L 205 (434)
..++..+..+.+ |++|+|++|.+.. .....++.....+++|++|+|++|.. +.+ .+ . .+...+..+++|
T Consensus 22 ~~l~~~l~~~~~-L~~L~L~~n~i~~---~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~-~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 22 KSVFAVLLEDDS-VKEIVLSGNTIGT---EAARWLSENIASKKDLEIAEFSDIFTGRVKD-EIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp HTTSHHHHHCSC-CCEEECTTSEECH---HHHHHHHHTTTTCTTCCEEECCSCCTTSCGG-GSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhcCCC-ccEEECCCCCCCH---HHHHHHHHHHHhCCCccEEeCcccccCcccc-chhHHHHHHHHHHhhCCcc
Confidence 344555555666 9999999998832 00111223355789999999988421 110 00 1 233345789999
Q ss_pred ceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH---HHHhccC---------CCCcEEEeeccccc
Q 046380 206 RDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF---ESALSKF---------SNLETLKLLSSVFG 273 (434)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~---~~~~~~~---------~~L~~L~l~~~~~~ 273 (434)
++|++++|....... ..+......+++|++|+++++...+... ...+..+ ++|++|++++|.+.
T Consensus 97 ~~L~Ls~n~l~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CEEECCSCCCCTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred cEEECCCCcCCHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 999999987743211 0112233567899999998877654332 2223344 89999999998875
Q ss_pred c--CCCC-cchhhccCccEEEeecCCCCc-----ce--ee-cCCcccEEEeccccCccc---ceeecCCCCCCccEEEEc
Q 046380 274 K--LPSS-LSSAILKKLKLVRMENCRFDG-----PV--EI-HSPNLETFVYKAGHGEIA---SFHFGGRGFGNIKTLAVN 339 (434)
Q Consensus 274 ~--~p~~-~~~~~~~~L~~L~l~~c~~l~-----~~--~~-~~p~L~~L~l~~~~~~~~---~~~~~~~~~~~Lk~L~l~ 339 (434)
. +|.. -....+++|++|++++|.--. .. .+ .+++|+.|+++++..+.. .+......+++|++|.++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 3 2210 012357799999999874221 11 23 689999999988765321 223345678899999999
Q ss_pred CccCCcHHHHHHHHh---c--CCccceEEeeccccccc---cc-c---ccccccceeEeccCCcc
Q 046380 340 GFLGLRNKSLEELIS---A--CILLENLYLNSCAIPKG---HL-E---IYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 340 ~~~~~~~~~l~~l~~---~--~p~Le~L~l~~~~~~~~---~~-~---~~~~~L~~L~l~~c~~l 392 (434)
++ .+++.+...+.. . +++|+.|+|++|.+... .+ . ...++|+.|++++|+.-
T Consensus 253 ~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 253 DC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 98 677765544433 3 89999999999988441 12 1 12478999999988644
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.28 E-value=1.7e-12 Score=124.06 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=43.9
Q ss_pred CCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEE
Q 046380 261 NLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTL 336 (434)
Q Consensus 261 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L 336 (434)
+|+.|+++++.+..+|..+ +++|++|+++++.-... ..+ .+++|+.|+++++... +.. ..+..+++|++|
T Consensus 173 ~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPTLREL 246 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC--CCCTTGGGGCTTCCEE
T ss_pred ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC--cCChhHhhCCCCCCEE
Confidence 4555555555555444322 24555555554421111 112 3555555555554322 111 112344555555
Q ss_pred EEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 337 AVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 337 ~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+++++ .++ .+..-+..+++|+.|+++++.+
T Consensus 247 ~L~~N-~l~--~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 247 HLDNN-KLS--RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp ECCSS-CCC--BCCTTGGGCTTCCEEECCSSCC
T ss_pred ECCCC-cCe--ecChhhhcCccCCEEECCCCCC
Confidence 55555 222 1111134555555555555554
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=4.5e-13 Score=126.59 Aligned_cols=226 Identities=16% Similarity=0.156 Sum_probs=127.1
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+++++|+++.+. ...+|..+|....+|++|+|+++.+... ...+.....+++|++|++++ .
T Consensus 28 ~~l~~L~L~~n~--------l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~~~L~~L~Ls~------n 88 (306)
T 2z66_A 28 SSATRLELESNK--------LQSLPHGVFDKLTQLTKLSLSSNGLSFK-----GCCSQSDFGTTSLKYLDLSF------N 88 (306)
T ss_dssp TTCCEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCEE-----EEEEHHHHSCSCCCEEECCS------C
T ss_pred CCCCEEECCCCc--------cCccCHhHhhccccCCEEECCCCccCcc-----cCcccccccccccCEEECCC------C
Confidence 567777776554 4466666554433388888887765210 00013344677888888877 3
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
.+..+...+..+++|++|+++++....... ......+++|++|+++++...... ...+..+++|+.|++++|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTC
T ss_pred ccccChhhcCCCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCC
Confidence 331111124557788888887776532100 012335677777777654432211 123566778888888877
Q ss_pred cccc--CCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCC
Q 046380 271 VFGK--LPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGL 344 (434)
Q Consensus 271 ~~~~--~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~ 344 (434)
.+.. .|.. ...+++|++|+++++.--.. ..+ .+++|++|+++++... +.. ..+..+++|++|+++++ .+
T Consensus 161 ~l~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N-~l 235 (306)
T 2z66_A 161 SFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLN-HI 235 (306)
T ss_dssp EEGGGEECSC--CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--BCCSGGGTTCTTCCEEECTTS-CC
T ss_pred ccccccchhH--HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--ccChhhccCcccCCEeECCCC-CC
Confidence 6654 3432 23466778888777642221 122 4677888888776533 111 12456678888888777 33
Q ss_pred cHHHHHHHHhcC-CccceEEeecccc
Q 046380 345 RNKSLEELISAC-ILLENLYLNSCAI 369 (434)
Q Consensus 345 ~~~~l~~l~~~~-p~Le~L~l~~~~~ 369 (434)
....... +..+ ++|+.|+++++++
T Consensus 236 ~~~~~~~-~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 236 MTSKKQE-LQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CBCSSSS-CCCCCTTCCEEECTTCCE
T ss_pred cccCHHH-HHhhhccCCEEEccCCCe
Confidence 3321111 1244 3788888887776
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.27 E-value=1.7e-12 Score=123.11 Aligned_cols=222 Identities=11% Similarity=-0.014 Sum_probs=154.4
Q ss_pred CCCeEEEEEe-ecCCCCCCCCccccccccccCCCceeEEEEeeeeec-ccccccccccccccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHV-RDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIG-AYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~-~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|+++. .. ....+|..+....+ |++|+|++|.+. . +|.....+++|++|++++
T Consensus 76 ~~L~~L~L~~~n~-------l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~--------~p~~~~~l~~L~~L~Ls~----- 134 (313)
T 1ogq_A 76 PYLNFLYIGGINN-------LVGPIPPAIAKLTQ-LHYLYITHTNVSGA--------IPDFLSQIKTLVTLDFSY----- 134 (313)
T ss_dssp TTCSEEEEEEETT-------EESCCCGGGGGCTT-CSEEEEEEECCEEE--------CCGGGGGCTTCCEEECCS-----
T ss_pred CCCCeeeCCCCCc-------ccccCChhHhcCCC-CCEEECcCCeeCCc--------CCHHHhCCCCCCEEeCCC-----
Confidence 7999999984 33 23456777666677 999999999883 3 235677999999999999
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCC-ceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMS-SLETLVFSFMVLNDRTFESALSKFSNLETLK 266 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 266 (434)
..+ +.+...+..+++|++|++++|.... ........++ +|+.|+++++...... ...+..++ |+.|+
T Consensus 135 -N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------~~p~~l~~l~~~L~~L~L~~N~l~~~~-~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 135 -NALSGTLPPSISSLPNLVGITFDGNRISG--------AIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLN-LAFVD 203 (313)
T ss_dssp -SEEESCCCGGGGGCTTCCEEECCSSCCEE--------ECCGGGGCCCTTCCEEECCSSEEEEEC-CGGGGGCC-CSEEE
T ss_pred -CccCCcCChHHhcCCCCCeEECcCCcccC--------cCCHHHhhhhhcCcEEECcCCeeeccC-ChHHhCCc-ccEEE
Confidence 666 4455557789999999999987621 1122233455 8999999876554211 12345555 99999
Q ss_pred eeccccccCCCCcchhhccCccEEEeecCCCCcce-ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCC
Q 046380 267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGL 344 (434)
Q Consensus 267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~ 344 (434)
+++|.+...+.. ....+++|+.|+++++...... .+ .+++|++|+++++.... .....+..+++|++|+++++ .+
T Consensus 204 Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N-~l 280 (313)
T 1ogq_A 204 LSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFN-NL 280 (313)
T ss_dssp CCSSEEEECCGG-GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSS-EE
T ss_pred CcCCcccCcCCH-HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCC-cc
Confidence 999988754321 1235789999999987432221 13 58999999999876431 22334567899999999988 34
Q ss_pred cHHHHHHHHhcCCccceEEeecccc
Q 046380 345 RNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 345 ~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+.. ++.. ..+++|+.|++.+++.
T Consensus 281 ~~~-ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 281 CGE-IPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEE-CCCS-TTGGGSCGGGTCSSSE
T ss_pred ccc-CCCC-ccccccChHHhcCCCC
Confidence 322 2222 5788999999999875
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.27 E-value=2.2e-11 Score=131.04 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=27.6
Q ss_pred CcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 306 PNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 306 p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
++|+.|+++++... +. ...+..+++|++|+++++ .+... ....+..+++|+.|++++|.+
T Consensus 266 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF--SLNSRVFETLKDLKVLNLAYN-KINKI-ADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SCCCEEECTTCCCC--EECSCCSSSCCCCCEEEEESC-CCCEE-CTTTTTTCSSCCEEEEESCCC
T ss_pred CCccEEECCCCccc--ccChhhhhcCCCCCEEECCCC-cCCCC-ChHHhcCCCCCCEEECCCCCC
Confidence 45555555554321 11 112344556666666655 22211 011124556666666666654
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=133.42 Aligned_cols=243 Identities=15% Similarity=0.085 Sum_probs=124.2
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++.+. ...++...|....+|++|+|++|.+ .. .+..+.++++|++|+|++
T Consensus 266 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~~~~~~l~~L~~L~Ls~------ 323 (844)
T 3j0a_A 266 SSVRHLDLSHGF--------VFSLNSRVFETLKDLKVLNLAYNKINKI--------ADEAFYGLDNLQVLNLSY------ 323 (844)
T ss_dssp SCCCEEECTTCC--------CCEECSCCSSSCCCCCEEEEESCCCCEE--------CTTTTTTCSSCCEEEEES------
T ss_pred CCccEEECCCCc--------ccccChhhhhcCCCCCEEECCCCcCCCC--------ChHHhcCCCCCCEEECCC------
Confidence 578888886654 3444444454444488888888876 22 013456788888888887
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+.+ +.....+.++++|+.|++++|...... ......+++|+.|+++++.... +..+++|+.|+++
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--------~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ--------DQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLS 389 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCC--------SSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEE
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccC--------hhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccC
Confidence 444 222334566788888888877653221 1112335666666666544332 1224555555555
Q ss_pred ccccccCCCC--------------------cchhhccCccEEEeecCCCCcc----eeecCCcccEEEeccccCcc----
Q 046380 269 SSVFGKLPSS--------------------LSSAILKKLKLVRMENCRFDGP----VEIHSPNLETFVYKAGHGEI---- 320 (434)
Q Consensus 269 ~~~~~~~p~~--------------------~~~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~l~~~~~~~---- 320 (434)
+|.+..+|.. .....+++|+.|+++++.--.. ....+++|+.|+++++....
T Consensus 390 ~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp SCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred CCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc
Confidence 5554444321 0112355666666655432110 11135666666666544220
Q ss_pred cceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCc
Q 046380 321 ASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDH 391 (434)
Q Consensus 321 ~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 391 (434)
+..+..+..+++|++|+++++ .++.. ....+..+++|+.|+|++|.+..-.......+|+.|+++++..
T Consensus 470 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYLNHN-YLNSL-PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538 (844)
T ss_dssp CCCSSCSSCBCCEECCCCCHH-HHTTC-CTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECC
T ss_pred ccchhhhcCcccccEEECCCC-ccccc-ChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcC
Confidence 011122344556666666555 11110 1111245667777777777653211122225666666666643
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.26 E-value=2.3e-11 Score=124.78 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=32.0
Q ss_pred cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcH-HHHHHHHhcCCccceEEeecccc
Q 046380 304 HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRN-KSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 304 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
.+++|++|+++++.... ........+++|++|.++++ .++. ..+...+..+++|+.|++++|.+
T Consensus 351 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SCCCCCEEECCSSCCCT-TTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred CCCCceEEECCCCcccc-chhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 45666666666654321 11122345566666666665 3322 12333344556666666666554
No 58
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.25 E-value=4.3e-12 Score=124.10 Aligned_cols=247 Identities=17% Similarity=0.098 Sum_probs=162.1
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++.+. ...+++..+....+|++|++++|.+.. +++. +..+++|++|++++
T Consensus 93 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~~l~~L~~L~L~~------ 150 (390)
T 3o6n_A 93 HTIQKLYMGFNA--------IRYLPPHVFQNVPLLTVLVLERNDLSS--------LPRGIFHNTPKLTTLSMSN------ 150 (390)
T ss_dssp TTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred CCcCEEECCCCC--------CCcCCHHHhcCCCCCCEEECCCCccCc--------CCHHHhcCCCCCcEEECCC------
Confidence 689999998765 445555544443349999999988732 2333 46789999999998
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcc--ccccccc------ceeeccCCceeEEEEEeEEeCchhHHHHhccCC
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFC--CRFLEFK------VANENSMSSLETLVFSFMVLNDRTFESALSKFS 260 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~--~~~l~~~------~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~ 260 (434)
..+ +.....+..+++|++|.+++|....... .+.+... -......++|+.|+++++...... ....+
T Consensus 151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~----~~~~~ 226 (390)
T 3o6n_A 151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNV 226 (390)
T ss_dssp SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE----CCCCS
T ss_pred CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc----ccccc
Confidence 444 2223346778999999999887643211 1100000 000112345666666654433211 13357
Q ss_pred CCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCcccceeecCCCCCCccEEE
Q 046380 261 NLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLA 337 (434)
Q Consensus 261 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~ 337 (434)
+|+.|++++|.+...+. ...+++|++|+++++.--.. ..+ .+++|+.|+++++... ++......+++|++|+
T Consensus 227 ~L~~L~l~~n~l~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 227 ELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLD 301 (390)
T ss_dssp SCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--EEECSSSCCTTCCEEE
T ss_pred cccEEECCCCCCcccHH---HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--ccCcccCCCCCCCEEE
Confidence 99999999998887653 45688999999998753322 233 5899999999997644 3444456789999999
Q ss_pred EcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380 338 VNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 338 l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 392 (434)
++++ .+.. +..-+..+++|+.|++++|.+..-. .....+|+.|++++++.-
T Consensus 302 L~~n-~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 302 LSHN-HLLH--VERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCSS-CCCC--CGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEE
T ss_pred CCCC-ccee--cCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCcc
Confidence 9998 4432 2222356799999999999984332 223568999999998643
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.24 E-value=8.1e-12 Score=126.84 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=40.3
Q ss_pred cCCcccEEEeccccC--c---ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHh--cCCccceEEeecccc
Q 046380 304 HSPNLETFVYKAGHG--E---IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS--ACILLENLYLNSCAI 369 (434)
Q Consensus 304 ~~p~L~~L~l~~~~~--~---~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~--~~p~Le~L~l~~~~~ 369 (434)
.+++|+.++++++.. . +.+.......+++|++|.+.++ .++...+..+.. ..++|+.|++++|.+
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred cccceeeccccccccccccceeecchhhhccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence 367777777766430 0 1111124556788888888877 566655544433 357899999988876
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.24 E-value=4.5e-11 Score=123.50 Aligned_cols=138 Identities=18% Similarity=0.043 Sum_probs=95.6
Q ss_pred cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEE
Q 046380 233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFV 312 (434)
Q Consensus 233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~ 312 (434)
..++|+.|.++++.... +...+++|+.|++++|.+..+|.. +++|+.|.++++. +..+.-..++|+.|+
T Consensus 159 ~~~~L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~-l~~l~~~~~~L~~L~ 227 (622)
T 3g06_A 159 LPSELCKLWAYNNQLTS-----LPMLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNR-LTSLPALPSGLKELI 227 (622)
T ss_dssp CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred ccCCCCEEECCCCCCCC-----CcccCCCCcEEECCCCCCCCCCCc-----cchhhEEECcCCc-ccccCCCCCCCCEEE
Confidence 45788888887765544 225678999999999988888753 5789999988864 223333468899999
Q ss_pred eccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccc-cccccccceeEeccCCc
Q 046380 313 YKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHL-EIYSLTLKTLVVHGCDH 391 (434)
Q Consensus 313 l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~-~~~~~~L~~L~l~~c~~ 391 (434)
++++..+ ++. ..+++|++|+++++ .++. +. ..+++|+.|++++|.+..-.. -...++|+.|++++++.
T Consensus 228 Ls~N~L~--~lp---~~l~~L~~L~Ls~N-~L~~--lp---~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 228 VSGNRLT--SLP---VLPSELKELMVSGN-RLTS--LP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCSSCCS--CCC---CCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccCCccC--cCC---CCCCcCcEEECCCC-CCCc--CC---cccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 9887644 222 45688999999887 4431 11 167889999999998732110 11245788999998875
Q ss_pred c
Q 046380 392 L 392 (434)
Q Consensus 392 l 392 (434)
.
T Consensus 297 ~ 297 (622)
T 3g06_A 297 S 297 (622)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.23 E-value=9.9e-12 Score=116.08 Aligned_cols=208 Identities=15% Similarity=0.089 Sum_probs=131.7
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..+. .+ |++|+++++.+.. ++ ..+..+++|++|++++ ..+ +.....+..+++|++|
T Consensus 23 l~~ip~~~~--~~-l~~L~l~~n~i~~--------~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 23 LQAVPVGIP--AA-SQRIFLHGNRISH--------VPAASFRACRNLTILWLHS------NVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CSSCCTTCC--TT-CSEEECTTSCCCE--------ECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCTTCCEE
T ss_pred cccCCcCCC--CC-ceEEEeeCCcCCc--------cCHHHcccCCCCCEEECCC------CccceeCHhhcCCccCCCEE
Confidence 344454432 23 8888888887722 11 2456788888888887 444 2223345678888888
Q ss_pred eecccc-CCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCc
Q 046380 209 DEAFVY-RPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKL 287 (434)
Q Consensus 209 ~l~~~~-~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L 287 (434)
++++|. .... .......+++|++|+++++...... ...+..+++|+.|++++|.+..+|... ...+++|
T Consensus 86 ~l~~n~~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L 155 (285)
T 1ozn_A 86 DLSDNAQLRSV--------DPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNL 155 (285)
T ss_dssp ECCSCTTCCCC--------CTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC
T ss_pred eCCCCCCcccc--------CHHHhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhH-hccCCCc
Confidence 888886 3211 0112335678888888765544321 124567888999999888887766421 2356788
Q ss_pred cEEEeecCCCCcce--ee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEE
Q 046380 288 KLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLY 363 (434)
Q Consensus 288 ~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~ 363 (434)
++|+++++.--... .+ .+++|+.|+++++... .. ...+..+++|++|+++++ .++.. ....+..+++|+.|+
T Consensus 156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRALQYLR 231 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTTCCEEE
T ss_pred cEEECCCCcccccCHHHhcCccccCEEECCCCccc--ccCHhHccCcccccEeeCCCC-cCCcC-CHHHcccCcccCEEe
Confidence 88888876422211 13 4788888888887643 22 224556788899988887 44332 223446788899999
Q ss_pred eecccc
Q 046380 364 LNSCAI 369 (434)
Q Consensus 364 l~~~~~ 369 (434)
++++++
T Consensus 232 l~~N~~ 237 (285)
T 1ozn_A 232 LNDNPW 237 (285)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 888876
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=3.8e-12 Score=120.98 Aligned_cols=214 Identities=14% Similarity=0.141 Sum_probs=155.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+++++|+++.+. ....+. +....+ |++|++++|.+.. ....++|++|++++ .
T Consensus 58 ~~L~~L~Ls~n~--------l~~~~~-~~~l~~-L~~L~Ls~n~l~~------------l~~~~~L~~L~l~~------n 109 (317)
T 3o53_A 58 TKLELLNLSSNV--------LYETLD-LESLST-LRTLDLNNNYVQE------------LLVGPSIETLHAAN------N 109 (317)
T ss_dssp TTCCEEECTTSC--------CEEEEE-ETTCTT-CCEEECCSSEEEE------------EEECTTCCEEECCS------S
T ss_pred CcCCEEECCCCc--------CCcchh-hhhcCC-CCEEECcCCcccc------------ccCCCCcCEEECCC------C
Confidence 799999998765 333333 334455 9999999998832 12348999999998 4
Q ss_pred ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
.+ +.. ...+++|++|.+++|..... .......+++|+.|+++++.........+...+++|+.|++++
T Consensus 110 ~l~~~~---~~~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 110 NISRVS---CSRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCSEEE---ECCCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred ccCCcC---ccccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 44 210 12478999999999987432 1122345789999999887666544343456789999999999
Q ss_pred cccccCCCCcchhhccCccEEEeecCCCCcce-ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380 270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK 347 (434)
Q Consensus 270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~ 347 (434)
|.+..+|... .+++|++|+++++.--... .+ .+++|+.|+++++... .+......+++|+.|+++++ .+...
T Consensus 179 N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N-~~~~~ 252 (317)
T 3o53_A 179 NFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGN-GFHCG 252 (317)
T ss_dssp SCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTC-CCBHH
T ss_pred CcCccccccc---ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCC-CccCc
Confidence 9988776422 3789999999987532221 23 6899999999998754 34445677899999999999 66656
Q ss_pred HHHHHHhcCCccceEEeecccc
Q 046380 348 SLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 348 ~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
.+...+..++.|+.|++.++..
T Consensus 253 ~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 253 TLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHhccccceEEECCCchh
Confidence 7777888999999999987654
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=1.2e-11 Score=127.79 Aligned_cols=247 Identities=17% Similarity=0.096 Sum_probs=162.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++.+. ...+|+..|....+|++|+|++|.+.. +++. +..+++|++|+|++
T Consensus 99 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~~l~~L~~L~Ls~------ 156 (597)
T 3oja_B 99 HTIQKLYMGFNA--------IRYLPPHVFQNVPLLTVLVLERNDLSS--------LPRGIFHNTPKLTTLSMSN------ 156 (597)
T ss_dssp TTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred CCCCEEECCCCc--------CCCCCHHHHcCCCCCCEEEeeCCCCCC--------CCHHHhccCCCCCEEEeeC------
Confidence 689999998765 555666665544449999999998732 2344 46899999999998
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcc--ccccccc------ceeeccCCceeEEEEEeEEeCchhHHHHhccCC
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFC--CRFLEFK------VANENSMSSLETLVFSFMVLNDRTFESALSKFS 260 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~--~~~l~~~------~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~ 260 (434)
+.+ ......+..+++|+.|.+++|....... .+.+..+ -......++|+.|+++++...... ....+
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~----~~~~~ 232 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNV 232 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE----CSCCS
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc----cccCC
Confidence 544 3333456778999999999987643211 1100000 000112345666665544332211 12346
Q ss_pred CCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCcccceeecCCCCCCccEEE
Q 046380 261 NLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLA 337 (434)
Q Consensus 261 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~ 337 (434)
+|+.|++++|.+...+. ...+++|+.|+++++.--.. ..+ .+++|+.|+++++... ++......+++|++|+
T Consensus 233 ~L~~L~L~~n~l~~~~~---l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLD 307 (597)
T ss_dssp CCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--EEECSSSCCTTCCEEE
T ss_pred CCCEEECCCCCCCCChh---hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--CCCcccccCCCCcEEE
Confidence 89999999998876542 45688999999998754332 233 6899999999987644 3444456789999999
Q ss_pred EcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380 338 VNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 338 l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 392 (434)
++++ .+. .++.-+..+++|+.|+|++|.+.... .....+|+.|++++++.-
T Consensus 308 Ls~N-~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 308 LSHN-HLL--HVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCSS-CCC--CCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEE
T ss_pred CCCC-CCC--ccCcccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCC
Confidence 9988 443 22222357899999999999983332 233568999999998643
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.21 E-value=2.4e-11 Score=113.47 Aligned_cols=199 Identities=12% Similarity=0.058 Sum_probs=139.6
Q ss_pred cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccc
Q 046380 110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
.+++++|+++.+. ...++...+....+|++|+++++.+.. + +.....+++|++|++++
T Consensus 31 ~~~l~~L~l~~n~--------i~~~~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~----- 89 (285)
T 1ozn_A 31 PAASQRIFLHGNR--------ISHVPAASFRACRNLTILWLHSNVLAR--------IDAAAFTGLALLEQLDLSD----- 89 (285)
T ss_dssp CTTCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS-----
T ss_pred CCCceEEEeeCCc--------CCccCHHHcccCCCCCEEECCCCccce--------eCHhhcCCccCCCEEeCCC-----
Confidence 3688999987655 455665545443349999999997722 1 24567899999999998
Q ss_pred eEe-e-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380 189 GFE-M-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK 266 (434)
Q Consensus 189 ~~~-~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 266 (434)
.. + +.....+..+++|++|.+++|..... .......+++|++|+++++...... ...+..+++|+.|+
T Consensus 90 -n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 90 -NAQLRSVDPATFHGLGRLHTLHLDRCGLQEL--------GPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLF 159 (285)
T ss_dssp -CTTCCCCCTTTTTTCTTCCEEECTTSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred -CCCccccCHHHhcCCcCCCEEECCCCcCCEE--------CHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEE
Confidence 43 3 22234467799999999999987432 1122345789999999876554322 12457899999999
Q ss_pred eeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCcc
Q 046380 267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFL 342 (434)
Q Consensus 267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~ 342 (434)
+++|.++.+|... ...+++|++|+++++.-... ..+ .+++|+.|+++++... +.. ..+..+++|++|+++++.
T Consensus 160 l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 160 LHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcccccCHHH-hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC--cCCHHHcccCcccCEEeccCCC
Confidence 9999888776421 34578999999998753322 223 5899999999997644 222 124678999999999884
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.19 E-value=5.8e-11 Score=112.27 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=136.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|++..+. ...+| .+..+.+ |++|++++|.+ +. ++ ...+++|++|++++
T Consensus 41 ~~L~~L~l~~~~--------i~~l~-~~~~l~~-L~~L~L~~n~i~~~---------~~-~~~l~~L~~L~L~~------ 94 (308)
T 1h6u_A 41 DGITTLSAFGTG--------VTTIE-GVQYLNN-LIGLELKDNQITDL---------AP-LKNLTKITELELSG------ 94 (308)
T ss_dssp HTCCEEECTTSC--------CCCCT-TGGGCTT-CCEEECCSSCCCCC---------GG-GTTCCSCCEEECCS------
T ss_pred CCcCEEEeeCCC--------ccCch-hhhccCC-CCEEEccCCcCCCC---------hh-HccCCCCCEEEccC------
Confidence 588999987655 33444 3444555 99999999988 43 23 77899999999998
Q ss_pred EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
..+..+. .+..+++|++|.+++|...+. .. ...+++|++|+++++...+.. .+..+++|+.|++++
T Consensus 95 n~l~~~~-~~~~l~~L~~L~l~~n~l~~~---------~~-l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 95 NPLKNVS-AIAGLQSIKTLDLTSTQITDV---------TP-LAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGN 160 (308)
T ss_dssp CCCSCCG-GGTTCTTCCEEECTTSCCCCC---------GG-GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCS
T ss_pred CcCCCch-hhcCCCCCCEEECCCCCCCCc---------hh-hcCCCCCCEEECCCCccCcCc---cccCCCCccEEEccC
Confidence 5552222 367799999999999987432 21 356789999999887655432 267899999999999
Q ss_pred cccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380 270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF 341 (434)
Q Consensus 270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~ 341 (434)
|.+..++. ...+++|++|+++++.--....+ .+++|+.|+++++... ... ....+++|+.|.++++
T Consensus 161 n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~--~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 161 AQVSDLTP---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp SCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEEE
T ss_pred CcCCCChh---hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC--ccc-cccCCCCCCEEEccCC
Confidence 98887764 45688999999998753333335 7899999999998744 221 3577899999999988
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=6e-12 Score=120.31 Aligned_cols=237 Identities=13% Similarity=0.080 Sum_probs=156.2
Q ss_pred CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceE
Q 046380 112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
.++.++++... ...+|..++ .. |++|+++++.+.. ++ .....+++|++|++++ .
T Consensus 34 ~l~~l~~~~~~--------l~~ip~~~~--~~-l~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~L~~------n 88 (332)
T 2ft3_A 34 HLRVVQCSDLG--------LKAVPKEIS--PD-TTLLDLQNNDISE--------LRKDDFKGLQHLYALVLVN------N 88 (332)
T ss_dssp ETTEEECCSSC--------CSSCCSCCC--TT-CCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS------S
T ss_pred cCCEEECCCCC--------ccccCCCCC--CC-CeEEECCCCcCCc--------cCHhHhhCCCCCcEEECCC------C
Confidence 45666655433 456666554 34 9999999998722 12 3567899999999998 4
Q ss_pred ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
.+ +.....+..+++|++|++++|..... +. ...++|++|+++++...... ...+..+++|+.|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---------~~--~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 89 KISKIHEKAFSPLRKLQKLYISKNHLVEI---------PP--NLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCCEECGGGSTTCTTCCEEECCSSCCCSC---------CS--SCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCS
T ss_pred ccCccCHhHhhCcCCCCEEECCCCcCCcc---------Cc--cccccCCEEECCCCccCccC-HhHhCCCccCCEEECCC
Confidence 44 22244567899999999999877422 11 11279999999876554321 12467899999999999
Q ss_pred ccccc--C-CCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCCc
Q 046380 270 SVFGK--L-PSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGLR 345 (434)
Q Consensus 270 ~~~~~--~-p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~~ 345 (434)
+.++. . |.. ...+ +|++|+++++.--.....-.++|++|+++++... ... ..+..+++|++|+++++ .+.
T Consensus 157 n~l~~~~~~~~~--~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~L~~N-~l~ 230 (332)
T 2ft3_A 157 NPLENSGFEPGA--FDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ--AIELEDLLRYSKLYRLGLGHN-QIR 230 (332)
T ss_dssp CCCBGGGSCTTS--SCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC--CCCTTSSTTCTTCSCCBCCSS-CCC
T ss_pred CccccCCCCccc--ccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCC-cCC
Confidence 98764 2 221 1112 8888888886422211113479999999887643 221 24567889999999988 333
Q ss_pred HHHHHHHHhcCCccceEEeecccccccccc-ccccccceeEeccCCcc
Q 046380 346 NKSLEELISACILLENLYLNSCAIPKGHLE-IYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 346 ~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~~~~~L~~L~l~~c~~l 392 (434)
... ...+..+++|+.|++++|.+..-... ....+|+.|+++++..-
T Consensus 231 ~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 231 MIE-NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCC-TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred cCC-hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 221 11236889999999999987321111 23468999999998543
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.18 E-value=6.6e-11 Score=114.00 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=98.7
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..++. + |++|+++++.+.. +++ ....+++|++|++++ ..+ +.....+.++++|++|
T Consensus 43 l~~iP~~~~~--~-L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 43 LNSIPSGLTE--A-VKSLDLSNNRITY--------ISNSDLQRCVNLQALVLTS------NGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CSSCCTTCCT--T-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTT------SCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccc--c-CcEEECCCCcCcc--------cCHHHhccCCCCCEEECCC------CccCccCHhhcCCCCCCCEE
Confidence 4455655443 3 7777777776621 112 456777777777776 333 2222335567777777
Q ss_pred eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380 209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK 288 (434)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~ 288 (434)
++++|..... . ...+..+++|++|++++|.+..+|..-....+++|+
T Consensus 106 ~Ls~n~l~~~--------------------------------~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 106 DLSYNYLSNL--------------------------------S-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp ECCSSCCSSC--------------------------------C-HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ECCCCcCCcC--------------------------------C-HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 7777655211 0 112455666666666666665555311123455666
Q ss_pred EEEeecCCCCcce---ee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEE
Q 046380 289 LVRMENCRFDGPV---EI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLY 363 (434)
Q Consensus 289 ~L~l~~c~~l~~~---~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~ 363 (434)
+|+++++..+..+ .+ .+++|++|+++++... +. ......+++|++|.++++ .+. .....+...+++|+.|+
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n-~l~-~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHMK-QHI-LLLEIFVDVTSSVECLE 228 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEECS-CST-THHHHHHHHTTTEEEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcC--ccCHHHHhccccCCeecCCCC-ccc-cchhhhhhhcccccEEE
Confidence 6666665433332 12 4566666666665422 11 123445566666666666 222 11223334566666666
Q ss_pred eecccc
Q 046380 364 LNSCAI 369 (434)
Q Consensus 364 l~~~~~ 369 (434)
+++|.+
T Consensus 229 L~~n~l 234 (353)
T 2z80_A 229 LRDTDL 234 (353)
T ss_dssp EESCBC
T ss_pred CCCCcc
Confidence 666655
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.18 E-value=8.5e-11 Score=120.54 Aligned_cols=127 Identities=18% Similarity=0.094 Sum_probs=75.9
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++.+. ...++...+....+|++|+|++|.+.. + +..+..+++|++|+|++
T Consensus 52 ~~L~~L~Ls~N~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~------ 109 (562)
T 3a79_B 52 PRTKALSLSQNS--------ISELRMPDISFLSELRVLRLSHNRIRS--------LDFHVFLFNQDLEYLDVSH------ 109 (562)
T ss_dssp TTCCEEECCSSC--------CCCCCGGGTTTCTTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECTT------
T ss_pred CCcCEEECCCCC--------ccccChhhhccCCCccEEECCCCCCCc--------CCHHHhCCCCCCCEEECCC------
Confidence 677777777655 445554434333338888888877621 1 13456778888888887
Q ss_pred EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCC--cEEEe
Q 046380 190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNL--ETLKL 267 (434)
Q Consensus 190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l 267 (434)
..+..+... .+++|++|++++|...... .+.....+++|++|++++...... .+..+++| +.|++
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~-------~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLP-------VCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILL 176 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCC-------CCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEE
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccC-------chHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEe
Confidence 433111111 5788888888887763211 012334678888888887665542 23444555 88887
Q ss_pred ecccc
Q 046380 268 LSSVF 272 (434)
Q Consensus 268 ~~~~~ 272 (434)
++|.+
T Consensus 177 ~~n~l 181 (562)
T 3a79_B 177 DLVSY 181 (562)
T ss_dssp EESSC
T ss_pred ecccc
Confidence 77755
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=124.63 Aligned_cols=218 Identities=17% Similarity=0.121 Sum_probs=156.2
Q ss_pred CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEe
Q 046380 112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE 191 (434)
Q Consensus 112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~ 191 (434)
++++|++..+. ...+|.. ...+ |++|++.++.... ......+++|++|++++ ..
T Consensus 305 ~L~~L~l~~n~--------~~~l~~~--~l~~-L~~L~l~~n~~~~---------~~~~~~~~~L~~L~l~~------n~ 358 (570)
T 2z63_A 305 GWQHLELVNCK--------FGQFPTL--KLKS-LKRLTFTSNKGGN---------AFSEVDLPSLEFLDLSR------NG 358 (570)
T ss_dssp CCSEEEEESCB--------CSSCCBC--BCSS-CCEEEEESCBSCC---------BCCCCBCTTCCEEECCS------SC
T ss_pred CccEEeeccCc--------ccccCcc--cccc-cCEEeCcCCcccc---------ccccccCCCCCEEeCcC------Cc
Confidence 88999998876 3356653 3445 9999999998722 02337899999999998 44
Q ss_pred e-C--hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 192 M-D--APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 192 ~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+ . .....+.++++|++|++++|... ........+++|++|+++++..........+..+++|+.|+++
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEE---------EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred cCccccccccccccCccCEEECCCCccc---------cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 4 2 23456788999999999998762 2222355789999999987665443222246789999999999
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCC-cc--eee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccC
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFD-GP--VEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLG 343 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l-~~--~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~ 343 (434)
+|.+...+.. ....+++|++|++++|.-. .. ..+ .+++|+.|+++++... +. ...+..+++|++|+++++ .
T Consensus 430 ~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n-~ 505 (570)
T 2z63_A 430 HTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASN-Q 505 (570)
T ss_dssp TSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS-C
T ss_pred CCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc--cCChhhhhcccCCCEEeCCCC-c
Confidence 9987764321 1345789999999998532 11 223 6899999999997644 22 234567899999999988 4
Q ss_pred CcHHHHHHHHhcCCccceEEeecccc
Q 046380 344 LRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 344 ~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
++.. ....+..+++|+.|++++|++
T Consensus 506 l~~~-~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 506 LKSV-PDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred CCCC-CHHHhhcccCCcEEEecCCcc
Confidence 4332 122346899999999999987
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.14 E-value=2.2e-10 Score=114.33 Aligned_cols=164 Identities=14% Similarity=0.036 Sum_probs=74.8
Q ss_pred HhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC
Q 046380 199 YFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS 278 (434)
Q Consensus 199 ~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~ 278 (434)
+.++++|++|.+++|..... ....++|++|+++++....-. .+..+++|+.|++++|.+..+|..
T Consensus 191 ~~~l~~L~~L~l~~N~l~~l------------~~~~~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~l~~~ 255 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKKL------------PDLPLSLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKTLPDL 255 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSC------------CCCCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCSC
T ss_pred ccCCCCCCEEECCCCcCCcC------------CCCcCcccEEECcCCcCCccc---ccCCCCCCCEEECCCCcCCccccc
Confidence 34566666666666554221 011245666666554333211 144566666666666665555531
Q ss_pred cchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcc-ccee-------------ecCCCC-CCccEEEEcCccC
Q 046380 279 LSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEI-ASFH-------------FGGRGF-GNIKTLAVNGFLG 343 (434)
Q Consensus 279 ~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~-------------~~~~~~-~~Lk~L~l~~~~~ 343 (434)
+++|+.|+++++.-. .+.-..++|+.|+++++.... .... .....+ ++|++|+++++ .
T Consensus 256 -----~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~ 328 (454)
T 1jl5_A 256 -----PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-K 328 (454)
T ss_dssp -----CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-C
T ss_pred -----ccccCEEECCCCccc-ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-c
Confidence 345666665554311 111123455555555443210 0000 000111 35666666555 2
Q ss_pred CcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCc
Q 046380 344 LRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDH 391 (434)
Q Consensus 344 ~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 391 (434)
++. +...+++|+.|++++|.+. .++....+|+.|+++++..
T Consensus 329 l~~-----lp~~~~~L~~L~L~~N~l~--~lp~~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 329 LIE-----LPALPPRLERLIASFNHLA--EVPELPQNLKQLHVEYNPL 369 (454)
T ss_dssp CSC-----CCCCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCC
T ss_pred ccc-----ccccCCcCCEEECCCCccc--cccchhhhccEEECCCCCC
Confidence 221 1112456666666666552 1222345666666666643
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.14 E-value=1.4e-10 Score=115.74 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=53.5
Q ss_pred cccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHH
Q 046380 174 PSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFE 253 (434)
Q Consensus 174 ~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~ 253 (434)
++|++|++++ ..+..+.. +.++++|++|++++|..... -...++|++|+++++......
T Consensus 131 ~~L~~L~L~~------n~l~~lp~-~~~l~~L~~L~l~~N~l~~l------------p~~~~~L~~L~L~~n~l~~l~-- 189 (454)
T 1jl5_A 131 PLLEYLGVSN------NQLEKLPE-LQNSSFLKIIDVDNNSLKKL------------PDLPPSLEFIAAGNNQLEELP-- 189 (454)
T ss_dssp TTCCEEECCS------SCCSSCCC-CTTCTTCCEEECCSSCCSCC------------CCCCTTCCEEECCSSCCSSCC--
T ss_pred CCCCEEECcC------CCCCCCcc-cCCCCCCCEEECCCCcCccc------------CCCcccccEEECcCCcCCcCc--
Confidence 4666666666 33311221 55566666776666654221 011235555555544333211
Q ss_pred HHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccc
Q 046380 254 SALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAG 316 (434)
Q Consensus 254 ~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~ 316 (434)
.+..+++|+.|++++|.+..+|.. .++|++|+++++.--....+ .+++|++|+++++
T Consensus 190 -~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 190 -ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred -cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 234555555555555555544431 23555555554422111112 3445555555443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.14 E-value=5.2e-11 Score=112.75 Aligned_cols=198 Identities=15% Similarity=0.065 Sum_probs=108.0
Q ss_pred CCCceeEEEEeeeeec-cccccccccccccc--ccCcccceEEEeeecccceEee-C---hHHHHHh-cCCCcceeeecc
Q 046380 141 SGSFLVSLTIRHCKIG-AYQKNTVMGLTLSN--FFNPSVRRLVVRGCMALQGFEM-D---APRLNYF-QCSGIRDFDEAF 212 (434)
Q Consensus 141 ~~~~L~~L~L~~~~~~-~~~~~~~~~l~~~~--~~~~~L~~L~L~~c~~~~~~~~-~---~l~~~~~-~cp~L~~L~l~~ 212 (434)
..+ |++|+|++|.+. . +|... ..+++|++|+|++ ..+ + .+..+.. ..++|++|++++
T Consensus 94 l~~-L~~L~L~~n~l~~~--------~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 94 ISG-LQELTLENLEVTGT--------APPPLLEATGPDLNILNLRN------VSWATRDAWLAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp TSC-CCEEEEEEEBCBSC--------CCCCSSSCCSCCCSEEEEES------CBCSSSSSHHHHHHTTCCTTCCEEEEES
T ss_pred cCC-ccEEEccCCcccch--------hHHHHHHhcCCCccEEEccC------CCCcchhHHHHHHHHhhcCCCcEEEeeC
Confidence 344 888888888762 2 12333 6778888888887 444 2 1222111 137888888887
Q ss_pred ccCCCCcccccccccceeeccCCceeEEEEEeEEeCch-hHHHHh--ccCCCCcEEEeeccccccCCCC--cchhhccCc
Q 046380 213 VYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR-TFESAL--SKFSNLETLKLLSSVFGKLPSS--LSSAILKKL 287 (434)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~p~~--~~~~~~~~L 287 (434)
|...... ......+++|++|+++++...+. .....+ ..+++|++|++++|.+..+|.. .....+++|
T Consensus 159 N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 159 AHSLNFS--------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp CSCCCCC--------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred CCCccch--------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 7763321 11223567777777776543321 122222 6777888888887776643320 011234677
Q ss_pred cEEEeecCCCCcce---ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEE
Q 046380 288 KLVRMENCRFDGPV---EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLY 363 (434)
Q Consensus 288 ~~L~l~~c~~l~~~---~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~ 363 (434)
++|+++++.--... .+ .+++|+.|+++++..+ .+..... ++|++|+++++ .++.. +. +..+++|+.|+
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYN-RLDRN--PS-PDELPQVGNLS 302 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSS-CCCSC--CC-TTTSCEEEEEE
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCC-CCCCC--hh-HhhCCCCCEEe
Confidence 77777765422211 11 3567777777766533 2221122 56777777666 33322 11 34666677777
Q ss_pred eecccc
Q 046380 364 LNSCAI 369 (434)
Q Consensus 364 l~~~~~ 369 (434)
++++++
T Consensus 303 L~~N~l 308 (312)
T 1wwl_A 303 LKGNPF 308 (312)
T ss_dssp CTTCTT
T ss_pred ccCCCC
Confidence 766665
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=1.6e-10 Score=109.46 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=139.0
Q ss_pred cCCCeEEEEEeecCCCCCCCCccccccccc-cCCCceeEEEEeeeeecccccccccccccccccC-----cccceEEEee
Q 046380 110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIF-SSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFN-----PSVRRLVVRG 183 (434)
Q Consensus 110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~ 183 (434)
-+++++|+++.+. ....+|..+| ....+|++|+|+++.+.. +|.....+ ++|++|++++
T Consensus 94 l~~L~~L~L~~n~-------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 94 ISGLQELTLENLE-------VTGTAPPPLLEATGPDLNILNLRNVSWAT--------RDAWLAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp TSCCCEEEEEEEB-------CBSCCCCCSSSCCSCCCSEEEEESCBCSS--------SSSHHHHHHTTCCTTCCEEEEES
T ss_pred cCCccEEEccCCc-------ccchhHHHHHHhcCCCccEEEccCCCCcc--------hhHHHHHHHHhhcCCCcEEEeeC
Confidence 4799999999887 3345677653 333349999999998832 12333444 8999999999
Q ss_pred ecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccccccc-ceeeccCCceeEEEEEeEEeCc--hhHHHHhccC
Q 046380 184 CMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFK-VANENSMSSLETLVFSFMVLND--RTFESALSKF 259 (434)
Q Consensus 184 c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~ 259 (434)
..+ ......+..+++|++|++++|....... .. ......+++|++|+++++.... ......+..+
T Consensus 159 ------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 159 ------AHSLNFSCEQVRVFPALSTLDLSDNPELGERG-----LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp ------CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-----HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred ------CCCccchHHHhccCCCCCEEECCCCCcCcchH-----HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 555 3333456789999999999997521100 00 0111467999999999877663 2223455788
Q ss_pred CCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEE
Q 046380 260 SNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAV 338 (434)
Q Consensus 260 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l 338 (434)
++|+.|++++|.+...+..-....+++|++|+++++.-- .+.- -.++|++|+++++..+ +.. ....+++|++|++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~--~~p-~~~~l~~L~~L~L 303 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLD--RNP-SPDELPQVGNLSL 303 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCC--SCC-CTTTSCEEEEEEC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCC--CCh-hHhhCCCCCEEec
Confidence 999999999999887542111234679999999987532 2222 1279999999998754 332 2678899999999
Q ss_pred cCc
Q 046380 339 NGF 341 (434)
Q Consensus 339 ~~~ 341 (434)
+++
T Consensus 304 ~~N 306 (312)
T 1wwl_A 304 KGN 306 (312)
T ss_dssp TTC
T ss_pred cCC
Confidence 987
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=2e-10 Score=104.26 Aligned_cols=190 Identities=12% Similarity=0.059 Sum_probs=93.8
Q ss_pred eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEe-eC-hHHHHHhcCCCcceeeecc-ccCCCCcc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFE-MD-APRLNYFQCSGIRDFDEAF-VYRPDHFC 220 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~-~~-~l~~~~~~cp~L~~L~l~~-~~~~~~~~ 220 (434)
|++|+++++.+.. +++ .+..+++|++|++++ .. +. -....+.++++|++|++++ +.....
T Consensus 33 l~~L~l~~n~l~~--------i~~~~~~~l~~L~~L~l~~------n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-- 96 (239)
T 2xwt_C 33 TQTLKLIETHLRT--------IPSHAFSNLPNISRIYVSI------DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-- 96 (239)
T ss_dssp CCEEEEESCCCSE--------ECTTTTTTCTTCCEEEEEC------CSSCCEECTTTEESCTTCCEEEEEEETTCCEE--
T ss_pred ccEEEEeCCcceE--------ECHHHccCCCCCcEEeCCC------CCCcceeCHhHcCCCcCCcEEECCCCCCeeEc--
Confidence 6666666665521 112 344566666666666 32 21 1112345566666666665 333110
Q ss_pred cccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCc---EEEeecc-ccccCCCCcchhhccCcc-EEEeecC
Q 046380 221 CRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLE---TLKLLSS-VFGKLPSSLSSAILKKLK-LVRMENC 295 (434)
Q Consensus 221 ~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~p~~~~~~~~~~L~-~L~l~~c 295 (434)
.......+++|++|+++++...... .+..+++|+ .|++++| .++.+|... ...+++|+ +|+++++
T Consensus 97 ------~~~~f~~l~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 97 ------DPDALKELPLLKFLGIFNTGLKMFP---DLTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNN 166 (239)
T ss_dssp ------CTTSEECCTTCCEEEEEEECCCSCC---CCTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSC
T ss_pred ------CHHHhCCCCCCCEEeCCCCCCcccc---ccccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCC
Confidence 0111234566666666665443311 134455555 7777766 665554321 22355666 6666654
Q ss_pred CCCcce---eecCCcccEEEecccc-Cccccee-ecCCCC-CCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccc
Q 046380 296 RFDGPV---EIHSPNLETFVYKAGH-GEIASFH-FGGRGF-GNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCA 368 (434)
Q Consensus 296 ~~l~~~---~~~~p~L~~L~l~~~~-~~~~~~~-~~~~~~-~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~ 368 (434)
.- ..+ .+..++|++|+++++. .. .+. ..+..+ ++|++|+++++ .++.-.. ..+++|+.|.+.++.
T Consensus 167 ~l-~~i~~~~~~~~~L~~L~L~~n~~l~--~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GF-TSVQGYAFNGTKLDAVYLNKNKYLT--VIDKDAFGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp CC-CEECTTTTTTCEEEEEECTTCTTCC--EECTTTTTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC-
T ss_pred CC-cccCHhhcCCCCCCEEEcCCCCCcc--cCCHHHhhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCcc
Confidence 31 121 1223567777776652 32 211 123455 67777777765 2221100 146677777776654
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=109.59 Aligned_cols=222 Identities=13% Similarity=0.066 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCcccccccc--ccCCCceeEEEEeeeeecccccccccccc-cccccC
Q 046380 97 KHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVI--FSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFN 173 (434)
Q Consensus 97 ~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~ 173 (434)
...+....... ..+++++|+++.+. .....|..+ ....+ |++|+|++|.+... ...++ .....+
T Consensus 78 ~~~~~~~~~~~-~~~~L~~L~l~~n~-------l~~~~~~~~~~~~~~~-L~~L~Ls~n~i~~~----~~~~~~~~~~~~ 144 (310)
T 4glp_A 78 AQLLVGALRVL-AYSRLKELTLEDLK-------ITGTMPPLPLEATGLA-LSSLRLRNVSWATG----RSWLAELQQWLK 144 (310)
T ss_dssp HHHHHHHHHHH-HHSCCCEEEEESCC-------CBSCCCCCSSSCCCBC-CSSCEEESCCCSST----TSSHHHHHTTBC
T ss_pred HHHHHHHHHhc-ccCceeEEEeeCCE-------eccchhhhhhhccCCC-CCEEEeecccccch----hhhhHHHHhhhc
Confidence 33444444443 33568888887655 222334433 22334 77777777766210 00000 112357
Q ss_pred cccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchh-
Q 046380 174 PSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRT- 251 (434)
Q Consensus 174 ~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~- 251 (434)
++|++|+|++ +.+ ......+..+++|++|++++|........ ........+|+|++|+++++......
T Consensus 145 ~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 145 PGLKVLSIAQ------AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL----MAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp SCCCEEEEEC------CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH----HTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred cCCCEEEeeC------CCcchhhHHHhccCCCCCEEECCCCCCccchhh----hHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 7777777776 433 22233445677777777777754210000 00011124556666666655443211
Q ss_pred -HHHHhccCCCCcEEEeeccccccC-CCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCC
Q 046380 252 -FESALSKFSNLETLKLLSSVFGKL-PSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRG 329 (434)
Q Consensus 252 -~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~ 329 (434)
....+..+++|++|++++|.+... |..+ ..+. ..++|++|+++++..+ .+....
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~--~~~~------------------~~~~L~~L~Ls~N~l~--~lp~~~-- 270 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSA--PRCM------------------WSSALNSLNLSFAGLE--QVPKGL-- 270 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCC--SSCC------------------CCTTCCCEECCSSCCC--SCCSCC--
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhH--Hhcc------------------CcCcCCEEECCCCCCC--chhhhh--
Confidence 111235556666666666655554 3211 0010 1245666666555432 221111
Q ss_pred CCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 330 FGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 330 ~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+++|++|+++++ .++.- . ....+|+|+.|+++++++
T Consensus 271 ~~~L~~L~Ls~N-~l~~~--~-~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 271 PAKLRVLDLSSN-RLNRA--P-QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CSCCSCEECCSC-CCCSC--C-CTTSCCCCSCEECSSTTT
T ss_pred cCCCCEEECCCC-cCCCC--c-hhhhCCCccEEECcCCCC
Confidence 256677777666 33321 1 124667777777777765
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.09 E-value=1.4e-10 Score=105.23 Aligned_cols=197 Identities=11% Similarity=0.023 Sum_probs=131.8
Q ss_pred CcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeecccc-CCCCcccccccccce-eeccCCceeEEEEEe-EEeC
Q 046380 173 NPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVY-RPDHFCCRFLEFKVA-NENSMSSLETLVFSF-MVLN 248 (434)
Q Consensus 173 ~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~-~~~~~~~~~l~~~~~-~~~~~p~L~~L~l~~-~~~~ 248 (434)
.++|++|++++ ..+ .-....+.++++|++|++++|. ... +.. ....+++|++|++++ ....
T Consensus 30 ~~~l~~L~l~~------n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---------i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 30 PPSTQTLKLIE------THLRTIPSHAFSNLPNISRIYVSIDVTLQQ---------LESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp CTTCCEEEEES------CCCSEECTTTTTTCTTCCEEEEECCSSCCE---------ECTTTEESCTTCCEEEEEEETTCC
T ss_pred CCcccEEEEeC------CcceEECHHHccCCCCCcEEeCCCCCCcce---------eCHhHcCCCcCCcEEECCCCCCee
Confidence 34899999998 555 2223356789999999999996 421 111 234688999999987 4333
Q ss_pred chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc---EEEeecCCCCccee---e-cCCccc-EEEeccccCcc
Q 046380 249 DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK---LVRMENCRFDGPVE---I-HSPNLE-TFVYKAGHGEI 320 (434)
Q Consensus 249 ~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~---~L~l~~c~~l~~~~---~-~~p~L~-~L~l~~~~~~~ 320 (434)
... ...+..+++|+.|++++|.+..+|. ...+++|+ +|+++++..+..+. + .+++|+ +|+++++...
T Consensus 95 ~i~-~~~f~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~- 169 (239)
T 2xwt_C 95 YID-PDALKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT- 169 (239)
T ss_dssp EEC-TTSEECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred EcC-HHHhCCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence 211 1245689999999999999988885 33466776 99999885555443 3 588999 9999887643
Q ss_pred cceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcC-CccceEEeeccccccccccccccccceeEeccCCcc
Q 046380 321 ASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISAC-ILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 321 ~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~-p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 392 (434)
.+.......++|++|.++++..+..- -...+..+ ++|+.|+++++.+. ........+|+.|.+.++..+
T Consensus 170 -~i~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 170 -SVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp -EECTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC---
T ss_pred -ccCHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCccCC
Confidence 22222222378999999988323311 11223567 99999999998873 222224568999998887643
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.08 E-value=1.5e-10 Score=121.42 Aligned_cols=84 Identities=13% Similarity=-0.011 Sum_probs=47.8
Q ss_pred cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCCcHHH-------HHHHHhcCCccceEEeeccccccccc-
Q 046380 304 HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGLRNKS-------LEELISACILLENLYLNSCAIPKGHL- 374 (434)
Q Consensus 304 ~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~~~~~-------l~~l~~~~p~Le~L~l~~~~~~~~~~- 374 (434)
.+++|+.|+++++... .+. ..+..+++|++|+++++ .++.-. ....+..+++|+.|++++|.+..-..
T Consensus 478 ~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIA--NINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCCCEEECCCCCCC--cCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence 4666777777665432 221 12456677888888776 333210 00123567888888888887632111
Q ss_pred -cccccccceeEeccCC
Q 046380 375 -EIYSLTLKTLVVHGCD 390 (434)
Q Consensus 375 -~~~~~~L~~L~l~~c~ 390 (434)
.....+|+.|+++++.
T Consensus 555 ~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNN 571 (680)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HcccccCcceeECCCCC
Confidence 1124578888887763
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=1.4e-10 Score=107.59 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=96.0
Q ss_pred eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR 222 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~ 222 (434)
|++|+++++.+.. +++ ....+++|++|++++ ..+ +.....+..+++|++|++++|.....
T Consensus 30 l~~L~ls~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 91 (276)
T 2z62_A 30 TKNLDLSFNPLRH--------LGSYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILTGNPIQSL---- 91 (276)
T ss_dssp CCEEECTTCCCCE--------ECTTTTTTCTTCSEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCEE----
T ss_pred ccEEECCCCcccc--------cCHhHhccccCCcEEECCC------CcCCccCHHHccCCcCCCEEECCCCccCcc----
Confidence 6666666665511 112 344566666666665 332 11122344566666666666654211
Q ss_pred cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--
Q 046380 223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP-- 300 (434)
Q Consensus 223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~-- 300 (434)
.......+++|++|+++++....... ..+..+++|+.|++++|.+..++..-....+++|++|+++++.--..
T Consensus 92 ----~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 92 ----ALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ----ChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 00112245566666665443322110 02455666777777766665522111233456677777666532211
Q ss_pred eee-cCCccc----EEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 301 VEI-HSPNLE----TFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 301 ~~~-~~p~L~----~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
..+ .+++|+ +|+++++... .+........+|++|+++++ .++.- ....+..+++|+.|+++++++
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEEEECCSS-CCSCC-CTTTTTTCCSCCEEECCSSCB
T ss_pred HHhhhhhhccccceeeecCCCccc--ccCccccCCCcccEEECCCC-ceeec-CHhHhcccccccEEEccCCcc
Confidence 111 233333 5566555432 22222223346777777776 33311 122335677788888877765
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=6.7e-11 Score=109.83 Aligned_cols=197 Identities=13% Similarity=0.101 Sum_probs=128.5
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|+++.+. ...++...+. ..+ |++|++++|.+.. +++ ....+++|++|++++
T Consensus 28 ~~l~~L~ls~n~--------l~~~~~~~~~~l~~-L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~----- 85 (276)
T 2z62_A 28 FSTKNLDLSFNP--------LRHLGSYSFFSFPE-LQVLDLSRCEIQT--------IEDGAYQSLSHLSTLILTG----- 85 (276)
T ss_dssp TTCCEEECTTCC--------CCEECTTTTTTCTT-CSEEECTTCCCCE--------ECTTTTTTCTTCCEEECTT-----
T ss_pred CCccEEECCCCc--------ccccCHhHhccccC-CcEEECCCCcCCc--------cCHHHccCCcCCCEEECCC-----
Confidence 578888887655 4555554444 445 9999999987722 112 456789999999988
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL 267 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 267 (434)
..+ +.....+.++++|++|.+.+|...... ......+++|++|+++++..........+..+++|+.|++
T Consensus 86 -n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 86 -NPIQSLALGAFSGLSSLQKLVAVETNLASLE--------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp -CCCCEECTTTTTTCTTCCEEECTTSCCCCST--------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred -CccCccChhhhcCCccccEEECCCCCccccC--------chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 444 222344677899999999888764321 1123467889999988766554333345678899999999
Q ss_pred eccccccCCCCcchhhccCcc----EEEeecCCCCc--ceeecCCcccEEEeccccCcccceee-cCCCCCCccEEEEcC
Q 046380 268 LSSVFGKLPSSLSSAILKKLK----LVRMENCRFDG--PVEIHSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNG 340 (434)
Q Consensus 268 ~~~~~~~~p~~~~~~~~~~L~----~L~l~~c~~l~--~~~~~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~ 340 (434)
++|.++.++.. ....+.+|+ +|+++++.--. ...+..++|++|+++++..+ ++.. .+..+++|++|.+++
T Consensus 157 s~N~l~~~~~~-~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 157 SSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CSSCCCEECGG-GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS--CCCTTTTTTCCSCCEEECCS
T ss_pred CCCCCCcCCHH-HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee--ecCHhHhcccccccEEEccC
Confidence 99988776532 123345555 67777653221 11224568999998887643 2222 245688999999987
Q ss_pred c
Q 046380 341 F 341 (434)
Q Consensus 341 ~ 341 (434)
+
T Consensus 234 N 234 (276)
T 2z62_A 234 N 234 (276)
T ss_dssp S
T ss_pred C
Confidence 6
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.07 E-value=7.9e-11 Score=113.95 Aligned_cols=234 Identities=11% Similarity=0.044 Sum_probs=123.5
Q ss_pred CCCeEEEEEeecCCCCCCCCcccccc----ccc-cCCCceeEEEEeeeeeccccccccccccccccc-----CcccceEE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPR----VIF-SSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFF-----NPSVRRLV 180 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~----~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~-----~~~L~~L~ 180 (434)
+++++|+++.+. ....+. ..+ ....+|++|+|++|.+... + +..... +++|++|+
T Consensus 22 ~~L~~L~Ls~n~--------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~-~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 22 HGVTSLDLSLNN--------LYSISTVELIQAFANTPASVTSLNLSGNSLGFK------N-SDELVQILAAIPANVTSLN 86 (362)
T ss_dssp TTCCEEECTTSC--------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS------C-HHHHHHHHHTSCTTCCEEE
T ss_pred CCceEEEccCCC--------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHH------H-HHHHHHHHhccCCCccEEE
Confidence 457777776554 223322 222 2331377888877766220 0 011122 27788888
Q ss_pred EeeecccceEee-C----hHHHHHhcC-CCcceeeeccccCCCCcccccccccceeecc-CCceeEEEEEeEEeCchh--
Q 046380 181 VRGCMALQGFEM-D----APRLNYFQC-SGIRDFDEAFVYRPDHFCCRFLEFKVANENS-MSSLETLVFSFMVLNDRT-- 251 (434)
Q Consensus 181 L~~c~~~~~~~~-~----~l~~~~~~c-p~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~-~p~L~~L~l~~~~~~~~~-- 251 (434)
|++ +.+ + .+...+..+ ++|++|++++|...+... ..+...... .++|++|+++++...+..
T Consensus 87 Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 87 LSG------NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS----SEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp CCS------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH----HHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred CcC------CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH----HHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 877 444 2 333444555 778888887776532211 000000111 247777777766555422
Q ss_pred -HHHHhccCC-CCcEEEeeccccccCCCCcch---hhc-cCccEEEeecCCCCc--c--e--ee-c-CCcccEEEecccc
Q 046380 252 -FESALSKFS-NLETLKLLSSVFGKLPSSLSS---AIL-KKLKLVRMENCRFDG--P--V--EI-H-SPNLETFVYKAGH 317 (434)
Q Consensus 252 -~~~~~~~~~-~L~~L~l~~~~~~~~p~~~~~---~~~-~~L~~L~l~~c~~l~--~--~--~~-~-~p~L~~L~l~~~~ 317 (434)
+...+...+ +|++|++++|.++..+..... ..+ ++|++|+++++.--. . + .+ . .++|++|+++++.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 223334454 788888887776654321111 123 477777777764211 0 1 11 2 4578888877765
Q ss_pred Ccccc---eeecCCCCCCccEEEEcCcc--CCcHHHHHHHHh---cCCccceEEeecccc
Q 046380 318 GEIAS---FHFGGRGFGNIKTLAVNGFL--GLRNKSLEELIS---ACILLENLYLNSCAI 369 (434)
Q Consensus 318 ~~~~~---~~~~~~~~~~Lk~L~l~~~~--~~~~~~l~~l~~---~~p~Le~L~l~~~~~ 369 (434)
....+ +......+++|++|.++++. .++.+.+..+.. .+++|+.|+++++++
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 43221 12234566778888887773 355555555544 455666777777766
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=7.4e-11 Score=118.82 Aligned_cols=211 Identities=16% Similarity=0.159 Sum_probs=151.9
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
++++.|+++.+. ....++ +....+ |++|+|++|.+.. + + ..++|++|++++ +
T Consensus 58 ~~L~~L~Ls~N~--------l~~~~~-l~~l~~-L~~L~Ls~N~l~~--------l-~---~~~~L~~L~L~~------N 109 (487)
T 3oja_A 58 TKLELLNLSSNV--------LYETLD-LESLST-LRTLDLNNNYVQE--------L-L---VGPSIETLHAAN------N 109 (487)
T ss_dssp TTCCEEECTTSC--------CEEEEE-CTTCTT-CCEEECCSSEEEE--------E-E---ECTTCCEEECCS------S
T ss_pred CCCCEEEeeCCC--------CCCCcc-cccCCC-CCEEEecCCcCCC--------C-C---CCCCcCEEECcC------C
Confidence 799999998765 333333 334455 9999999998832 1 1 238999999998 4
Q ss_pred ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
.+ +.. ...+++|+.|.+++|..... .......+++|+.|+++++...+.....+...+++|+.|++++
T Consensus 110 ~l~~~~---~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 110 NISRVS---CSRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCCCEE---ECCCSSCEEEECCSSCCCSG--------GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCCCCC---ccccCCCCEEECCCCCCCCC--------CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 44 211 12479999999999987432 1222345899999999887666543333445789999999999
Q ss_pred cccccCCCCcchhhccCccEEEeecCCCCcce-ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380 270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK 347 (434)
Q Consensus 270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~ 347 (434)
|.+..+|.. ..+++|+.|+++++.--... .+ .+++|+.|+++++... +++.....+++|+.|+++++ .+...
T Consensus 179 N~l~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N-~l~c~ 252 (487)
T 3oja_A 179 NFIYDVKGQ---VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGN-GFHCG 252 (487)
T ss_dssp SCCCEEECC---CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTC-CBCHH
T ss_pred Ccccccccc---ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEEcCCC-CCcCc
Confidence 998877642 24789999999987532221 23 6899999999998754 44445667899999999998 55555
Q ss_pred HHHHHHhcCCccceEEeec
Q 046380 348 SLEELISACILLENLYLNS 366 (434)
Q Consensus 348 ~l~~l~~~~p~Le~L~l~~ 366 (434)
.+...+..++.|+.+++..
T Consensus 253 ~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEeccc
Confidence 6777778889999888763
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=2.9e-11 Score=117.05 Aligned_cols=236 Identities=12% Similarity=0.090 Sum_probs=146.5
Q ss_pred CceeEEEEeeeeecccccccccccccccccCc-ccceEEEeeecccceEee-C----hHHHHHhcC-CCcceeeeccccC
Q 046380 143 SFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNP-SVRRLVVRGCMALQGFEM-D----APRLNYFQC-SGIRDFDEAFVYR 215 (434)
Q Consensus 143 ~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~c~~~~~~~~-~----~l~~~~~~c-p~L~~L~l~~~~~ 215 (434)
++|++|+|++|.+... ....+......++ +|++|+|++ +.+ + .+...+..+ ++|++|++++|..
T Consensus 22 ~~L~~L~Ls~n~l~~~---~~~~l~~~l~~~~~~L~~L~Ls~------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSI---STVELIQAFANTPASVTSLNLSG------NSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TTCCEEECTTSCGGGS---CHHHHHHHHHTCCTTCCEEECCS------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCceEEEccCCCCChH---HHHHHHHHHHhCCCceeEEECcC------CCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 3399999999988320 0000012334677 899999999 555 3 344444444 9999999999987
Q ss_pred CCCcccccccccceeeccC-CceeEEEEEeEEeCchhHH---HHhcc-CCCCcEEEeeccccccCCCCcch---hhcc-C
Q 046380 216 PDHFCCRFLEFKVANENSM-SSLETLVFSFMVLNDRTFE---SALSK-FSNLETLKLLSSVFGKLPSSLSS---AILK-K 286 (434)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~---~~~~~-~~~L~~L~l~~~~~~~~p~~~~~---~~~~-~ 286 (434)
.+... ..+....... ++|++|+++++...+.... ..+.. .++|++|++++|.++.......+ ..++ +
T Consensus 93 ~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 93 SYKSS----DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp GGSCH----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred ChHHH----HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 43211 0011111223 7999999998876654333 23444 46999999999988754321111 1233 8
Q ss_pred ccEEEeecCCCCcce--e----e-cC-CcccEEEeccccCcccce---eecCCC-CCCccEEEEcCccCCcH---HHHHH
Q 046380 287 LKLVRMENCRFDGPV--E----I-HS-PNLETFVYKAGHGEIASF---HFGGRG-FGNIKTLAVNGFLGLRN---KSLEE 351 (434)
Q Consensus 287 L~~L~l~~c~~l~~~--~----~-~~-p~L~~L~l~~~~~~~~~~---~~~~~~-~~~Lk~L~l~~~~~~~~---~~l~~ 351 (434)
|++|++++|.--... . + .+ ++|++|+++++.....+. ...... .++|++|+++++ .+++ +.+..
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~ 247 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKL 247 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHH
Confidence 999999987422111 1 1 24 599999999987543221 112222 468999999998 5555 45566
Q ss_pred HHhcCCccceEEeeccccc---ccccc------ccccccceeEeccCCcc
Q 046380 352 LISACILLENLYLNSCAIP---KGHLE------IYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 352 l~~~~p~Le~L~l~~~~~~---~~~~~------~~~~~L~~L~l~~c~~l 392 (434)
+.+.+++|+.|++++|.+. ..... ....+|+.|++++++.-
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 6678899999999999831 11111 12346888888887643
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.04 E-value=2.5e-10 Score=119.75 Aligned_cols=248 Identities=14% Similarity=0.075 Sum_probs=156.3
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccC---CCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSS---GSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMA 186 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~---~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~ 186 (434)
+++++|+++.+.- ....++...|.. .+ |+.|++++|.+ .. .+.....+++|++|++++
T Consensus 353 ~~L~~L~Ls~n~~------~~~~l~~~~f~~~~~~~-L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~--- 414 (680)
T 1ziw_A 353 INLKYLSLSNSFT------SLRTLTNETFVSLAHSP-LHILNLTKNKISKI--------ESDAFSWLGHLEVLDLGL--- 414 (680)
T ss_dssp TTCCEEECTTCBS------CCCEECTTTTGGGTTSC-CCEEECTTSCCCEE--------CTTTTTTCTTCCEEECCS---
T ss_pred cCCcEEECCCCch------hhhhcchhhhcccccCc-CceEECCCCCCCeE--------ChhhhhCCCCCCEEeCCC---
Confidence 6899999875430 122333333322 34 99999999877 22 123556889999999998
Q ss_pred cceEee-ChH-HHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCc-hhHHHHhccCCCCc
Q 046380 187 LQGFEM-DAP-RLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLND-RTFESALSKFSNLE 263 (434)
Q Consensus 187 ~~~~~~-~~l-~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~~L~ 263 (434)
..+ +.+ ...+.++++|++|.+++|..... .......+|+|+.|+++++.... ......+..+++|+
T Consensus 415 ---N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 415 ---NEIGQELTGQEWRGLENIFEIYLSYNKYLQL--------TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp ---SCCEEECCSGGGTTCTTCCEEECCSCSEEEC--------CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred ---CcCccccCcccccCcccccEEecCCCCccee--------ChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 443 222 24567899999999998875221 11122357888888887654432 11222456788899
Q ss_pred EEEeeccccccCCCCcchhhccCccEEEeecCCCCcc----------eee-cCCcccEEEeccccCcccceee-cCCCCC
Q 046380 264 TLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP----------VEI-HSPNLETFVYKAGHGEIASFHF-GGRGFG 331 (434)
Q Consensus 264 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~----------~~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~ 331 (434)
.|++++|.+..+|... ...+++|+.|+++++.-... ..+ .+++|+.|+++++... .+.. .+..++
T Consensus 484 ~L~Ls~N~l~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~ 560 (680)
T 1ziw_A 484 ILDLSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVEVFKDLF 560 (680)
T ss_dssp EEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTTTTTTCT
T ss_pred EEECCCCCCCcCChhh-hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHHHccccc
Confidence 9999988888776421 24567888888887642111 013 5788999998887643 3322 356788
Q ss_pred CccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccc---cccccceeEeccCCcc
Q 046380 332 NIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEI---YSLTLKTLVVHGCDHL 392 (434)
Q Consensus 332 ~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l 392 (434)
+|++|+++++ .++.- ....+..+++|+.|++++|.+..-.... ...+|+.|++++++..
T Consensus 561 ~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 561 ELKIIDLGLN-NLNTL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CcceeECCCC-CCCcC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 8999999877 33311 1223357788999999998773311111 3467888888876543
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=3.6e-10 Score=104.58 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=94.4
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..+. .+ |++|+|+++.+.. +++ .+..+++|++|++++ ..+ .-....+..+++|++|
T Consensus 28 l~~ip~~~~--~~-l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 28 LTAIPSNIP--AD-TKKLDLQSNKLSS--------LPSKAFHRLTKLRLLYLND------NKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp CSSCCSCCC--TT-CSEEECCSSCCSC--------CCTTSSSSCTTCCEEECCS------SCCSCCCTTTTSSCTTCCEE
T ss_pred CCccCCCCC--CC-CCEEECcCCCCCe--------eCHHHhcCCCCCCEEECCC------CccCeeChhhhcCCCCCCEE
Confidence 344555443 23 8888888887722 122 456788888888887 444 2223345668888888
Q ss_pred eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380 209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK 288 (434)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~ 288 (434)
.++++...... ......+++|++|++++....... ...+..+++|+.|++++|.+..+|... ...+++|+
T Consensus 91 ~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~ 160 (270)
T 2o6q_A 91 WVTDNKLQALP--------IGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLK 160 (270)
T ss_dssp ECCSSCCCCCC--------TTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC
T ss_pred ECCCCcCCcCC--------HhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCccCHhH-ccCCcccc
Confidence 88887663221 011224566666666654433211 112455667777777766666655321 12345666
Q ss_pred EEEeecCCCCcc--eee-cCCcccEEEeccccCcccceee-cCCCCCCccEEEEcCc
Q 046380 289 LVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNGF 341 (434)
Q Consensus 289 ~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~~ 341 (434)
+|+++++.-... ..+ .+++|+.|+++++... .+.. .+..+++|+.|.++++
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSS
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCC--cCCHHHhccccCCCEEEecCC
Confidence 666655421111 112 3455555555554322 1111 1233455555555544
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.02 E-value=2.2e-10 Score=106.17 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=51.8
Q ss_pred hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCccccee-ecCCCCC
Q 046380 256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFH-FGGRGFG 331 (434)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~ 331 (434)
+..+++|+.|++++|.++.+|... ...+++|++|+++++.--... .+ .+++|+.|+++++... +.. ..+..++
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~ 205 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK--SVPDGVFDRLT 205 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCT
T ss_pred hccCCCCCEEECCCCccCccCHHH-hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC--ccCHHHHhCCc
Confidence 345566666666666665554311 123456666666655321111 12 3566666666665432 111 1234566
Q ss_pred CccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 332 NIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 332 ~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+|++|.++++. .. ..||+|+.|++..+..
T Consensus 206 ~L~~L~l~~N~-~~--------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 206 SLQYIWLHDNP-WD--------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp TCCEEECCSSC-BC--------CCTTTTHHHHHHHHHT
T ss_pred CCCEEEccCCC-cc--------ccCcHHHHHHHHHHhC
Confidence 77777776662 11 2356666666655554
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.00 E-value=9.2e-10 Score=103.09 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=20.2
Q ss_pred CCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 327 GRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 327 ~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
...+++|++|.++++ .+++- .. +..+++|+.|+++++++
T Consensus 174 l~~l~~L~~L~L~~N-~i~~l--~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GTTCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEEEEEEEE
T ss_pred hcCCCccCEEECCCC-cCCCC--hh-hccCCCCCEEECcCCcc
Confidence 344555666666555 22221 11 34566666666666655
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.00 E-value=3.3e-10 Score=106.13 Aligned_cols=193 Identities=16% Similarity=0.101 Sum_probs=108.6
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
++++++++.... ...+|..++ .. ++.|+|+++.+... .+..+..+++|++|+|++ .
T Consensus 10 ~~l~~l~~~~~~--------l~~ip~~~~--~~-l~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~------n 65 (290)
T 1p9a_G 10 ASHLEVNCDKRN--------LTALPPDLP--KD-TTILHLSENLLYTF-------SLATLMPYTRLTQLNLDR------A 65 (290)
T ss_dssp TTCCEEECTTSC--------CSSCCSCCC--TT-CCEEECTTSCCSEE-------EGGGGTTCTTCCEEECTT------S
T ss_pred CCccEEECCCCC--------CCcCCCCCC--CC-CCEEEcCCCcCCcc-------CHHHhhcCCCCCEEECCC------C
Confidence 345555554332 455665554 23 88888888876220 013456788888888887 4
Q ss_pred eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380 191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS 270 (434)
Q Consensus 191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 270 (434)
.+..+.. ...+++|+.|+++++.... +......+++|+.|++++....... ...+..+++|+.|++++|
T Consensus 66 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 66 ELTKLQV-DGTLPVLGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGN 134 (290)
T ss_dssp CCCEEEC-CSCCTTCCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTS
T ss_pred ccCcccC-CCCCCcCCEEECCCCcCCc---------CchhhccCCCCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCC
Confidence 4411111 1567888888888876632 2223345677777777665443211 113456777777777777
Q ss_pred ccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380 271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF 341 (434)
Q Consensus 271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~ 341 (434)
.+..+|... ...+++|+.|+++++.--... .+ .+++|+.|.++++... .+........+|+.|.+.++
T Consensus 135 ~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 135 ELKTLPPGL-LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCCCCCTTT-TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSC
T ss_pred CCCccChhh-cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCC
Confidence 777665421 234567777777665321111 12 3667777777665533 33333344556777777655
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=108.77 Aligned_cols=203 Identities=14% Similarity=0.063 Sum_probs=109.6
Q ss_pred CCceeEEEEeeeee-ccccccccccccccc--ccCcccceEEEeeecccceEee-C---hHH-HHHhcCCCcceeeeccc
Q 046380 142 GSFLVSLTIRHCKI-GAYQKNTVMGLTLSN--FFNPSVRRLVVRGCMALQGFEM-D---APR-LNYFQCSGIRDFDEAFV 213 (434)
Q Consensus 142 ~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~--~~~~~L~~L~L~~c~~~~~~~~-~---~l~-~~~~~cp~L~~L~l~~~ 213 (434)
.+ |++|++++|.+ +. .+... ..+++|++|+|++ +.+ + .+. ..+..+++|++|++++|
T Consensus 91 ~~-L~~L~l~~n~l~~~--------~~~~~~~~~~~~L~~L~Ls~------n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 91 SR-LKELTLEDLKITGT--------MPPLPLEATGLALSSLRLRN------VSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp SC-CCEEEEESCCCBSC--------CCCCSSSCCCBCCSSCEEES------CCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred Cc-eeEEEeeCCEeccc--------hhhhhhhccCCCCCEEEeec------ccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 44 88888888876 22 12233 6788888888887 544 2 122 22346888888888877
Q ss_pred cCCCCcccccccccceeeccCCceeEEEEEeEEeCch-hHH--HHhccCCCCcEEEeeccccccCCCCcchhhccCccEE
Q 046380 214 YRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR-TFE--SALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLV 290 (434)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~--~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L 290 (434)
...... ......+++|++|+++++..... ... ..+..+++|++|++++|.++.+|..
T Consensus 156 ~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~------------ 215 (310)
T 4glp_A 156 HSPAFS--------CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV------------ 215 (310)
T ss_dssp SSCCCC--------TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH------------
T ss_pred Ccchhh--------HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH------------
Confidence 663221 01112344555555544332211 010 0113344444444444433322210
Q ss_pred EeecCCCCcceee-cCCcccEEEeccccCccc--ceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecc
Q 046380 291 RMENCRFDGPVEI-HSPNLETFVYKAGHGEIA--SFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSC 367 (434)
Q Consensus 291 ~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~--~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~ 367 (434)
....+ .+++|++|+++++..... ........+++|++|+++++ .++ .++.- -+++|+.|++++|
T Consensus 216 --------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~--~lp~~--~~~~L~~L~Ls~N 282 (310)
T 4glp_A 216 --------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLE--QVPKG--LPAKLRVLDLSSN 282 (310)
T ss_dssp --------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCC--SCCSC--CCSCCSCEECCSC
T ss_pred --------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCC--chhhh--hcCCCCEEECCCC
Confidence 00011 457777788777654311 11112223479999999988 444 11111 2489999999999
Q ss_pred ccccccccccccccceeEeccCCcc
Q 046380 368 AIPKGHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 368 ~~~~~~~~~~~~~L~~L~l~~c~~l 392 (434)
.+..-......++|+.|++++++..
T Consensus 283 ~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 283 RLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cCCCCchhhhCCCccEEECcCCCCC
Confidence 9843223334578999999988643
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.98 E-value=7.4e-10 Score=103.73 Aligned_cols=171 Identities=18% Similarity=0.123 Sum_probs=103.2
Q ss_pred cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCc
Q 046380 170 NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLND 249 (434)
Q Consensus 170 ~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~ 249 (434)
...+++|++|++++ ..+..+.. +..+++|++|.+++|...+.
T Consensus 42 ~~~l~~L~~L~l~~------~~i~~~~~-~~~l~~L~~L~L~~n~l~~~------------------------------- 83 (291)
T 1h6t_A 42 QNELNSIDQIIANN------SDIKSVQG-IQYLPNVTKLFLNGNKLTDI------------------------------- 83 (291)
T ss_dssp HHHHHTCCEEECTT------SCCCCCTT-GGGCTTCCEEECCSSCCCCC-------------------------------
T ss_pred hhhcCcccEEEccC------CCcccChh-HhcCCCCCEEEccCCccCCC-------------------------------
Confidence 34677777777776 33311111 45577777777777655221
Q ss_pred hhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCC
Q 046380 250 RTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGR 328 (434)
Q Consensus 250 ~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~ 328 (434)
. .+..+++|+.|++++|.+..+|. ...+++|++|+++++.--....+ .+++|+.|+++++... .+ ....
T Consensus 84 -~---~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~--~~-~~l~ 153 (291)
T 1h6t_A 84 -K---PLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT--DI-TVLS 153 (291)
T ss_dssp -G---GGTTCTTCCEEECCSSCCCCGGG---GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC--CC-GGGG
T ss_pred -c---ccccCCCCCEEECCCCcCCCChh---hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCC--cc-hhhc
Confidence 0 13455566666666655555442 23455666666665532222223 5777888887776533 22 2456
Q ss_pred CCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380 329 GFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL 392 (434)
Q Consensus 329 ~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 392 (434)
.+++|++|.++++ .++... . +..+++|+.|++++|.+..-.......+|+.|++++++..
T Consensus 154 ~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 154 RLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred cCCCCCEEEccCC-ccccch--h-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 7889999999988 443321 1 5689999999999998733211123468999999988644
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.96 E-value=2.2e-10 Score=106.20 Aligned_cols=185 Identities=13% Similarity=0.103 Sum_probs=123.0
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|.+..+. ...++ .+..+.+ |++|++++|.+ +. +....+++|++|++++
T Consensus 41 ~~L~~L~l~~~~--------i~~~~-~l~~l~~-L~~L~l~~n~l~~~----------~~l~~l~~L~~L~L~~------ 94 (272)
T 3rfs_A 41 NSIDQIIANNSD--------IKSVQ-GIQYLPN-VRYLALGGNKLHDI----------SALKELTNLTYLILTG------ 94 (272)
T ss_dssp TTCCEEECTTSC--------CCCCT-TGGGCTT-CCEEECTTSCCCCC----------GGGTTCTTCCEEECTT------
T ss_pred cceeeeeeCCCC--------ccccc-ccccCCC-CcEEECCCCCCCCc----------hhhcCCCCCCEEECCC------
Confidence 688888876554 22222 2344455 99999999887 33 5567889999999988
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+.+ +.....+..+++|++|++++|...... ......+++|++|+++++...... ...+..+++|+.|+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLP--------DGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLS 165 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccC--------HHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECC
Confidence 444 333344677899999999988763221 111245788999998876554322 1235778999999999
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCCccee--e-cCCcccEEEeccccCcccceeecCCCCCCccEEEEc
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE--I-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVN 339 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~--~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~ 339 (434)
+|.+..+|... ...+++|++|+++++.--.... + .+++|+.|++.++... ..+++|+.|.+.
T Consensus 166 ~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 166 YNQLQSLPEGV-FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEW 230 (272)
T ss_dssp SSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHH
T ss_pred CCCcCccCHHH-hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHH
Confidence 99888776421 2457899999998875332222 3 5899999999886532 235556555443
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.95 E-value=4.9e-10 Score=104.92 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=120.7
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF 223 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~ 223 (434)
++.+++.++.+.. +|+. -.++|++|+|++ ..+ ......+..+++|++|.++++....
T Consensus 12 l~~l~~~~~~l~~--------ip~~--~~~~l~~L~L~~------N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------ 69 (290)
T 1p9a_G 12 HLEVNCDKRNLTA--------LPPD--LPKDTTILHLSE------NLLYTFSLATLMPYTRLTQLNLDRAELTK------ 69 (290)
T ss_dssp CCEEECTTSCCSS--------CCSC--CCTTCCEEECTT------SCCSEEEGGGGTTCTTCCEEECTTSCCCE------
T ss_pred ccEEECCCCCCCc--------CCCC--CCCCCCEEEcCC------CcCCccCHHHhhcCCCCCEEECCCCccCc------
Confidence 8999998887732 2222 237899999998 555 2233456789999999999987632
Q ss_pred ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--e
Q 046380 224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--V 301 (434)
Q Consensus 224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~ 301 (434)
.... ..+++|+.|++++...... ...+..+++|+.|++++|.++.+|... ...+++|++|.++++.--.. -
T Consensus 70 ---~~~~-~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 70 ---LQVD-GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp ---EECC-SCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSCCCCCCTT
T ss_pred ---ccCC-CCCCcCCEEECCCCcCCcC--chhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCCCCccChh
Confidence 1111 4678888888877654421 123467788888888888887776421 24467788888877632211 1
Q ss_pred ee-cCCcccEEEeccccCcccceee-cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 302 EI-HSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 302 ~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
.+ .+++|+.|+++++... ++.. .+..+++|++|.++++ .+. .+..-+...++|+.|++++++.
T Consensus 143 ~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~L~~N-~l~--~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQEN-SLY--TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTCTTCCEEECTTSCCS--CCCTTTTTTCTTCCEEECCSS-CCC--CCCTTTTTTCCCSEEECCSCCB
T ss_pred hcccccCCCEEECCCCcCC--ccCHHHhcCcCCCCEEECCCC-cCC--ccChhhcccccCCeEEeCCCCc
Confidence 12 4677888888776533 2222 2345677888887776 332 1211223456777777777665
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.95 E-value=9.3e-10 Score=113.41 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=30.9
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccC
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
|+.|++++|.+ .. +....+++|++|+|++ +.+..+.. +..+++|+.|.|++|..
T Consensus 45 L~~L~l~~n~i~~l----------~~l~~l~~L~~L~Ls~------N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 45 IDQIIANNSDIKSV----------QGIQYLPNVTKLFLNG------NKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp CCCCBCTTCCCCCC----------TTGGGCTTCCEEECTT------SCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCEEECcCCCCCCC----------hHHccCCCCCEEEeeC------CCCCCChh-hccCCCCCEEECcCCCC
Confidence 66666666655 32 3455666777777766 44411111 55667777777766655
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.95 E-value=2.7e-09 Score=93.75 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=21.4
Q ss_pred HhccCCCCcEEEeeccc-cccCCCCcchhhccCccEEEeecC
Q 046380 255 ALSKFSNLETLKLLSSV-FGKLPSSLSSAILKKLKLVRMENC 295 (434)
Q Consensus 255 ~~~~~~~L~~L~l~~~~-~~~~p~~~~~~~~~~L~~L~l~~c 295 (434)
.+..+++|+.|++++|. ++.+|. ...+++|++|++++|
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFD 169 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTB
T ss_pred HHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCC
Confidence 44566777777777665 555542 233445555555544
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.92 E-value=1.4e-09 Score=112.04 Aligned_cols=173 Identities=12% Similarity=0.089 Sum_probs=128.4
Q ss_pred ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC
Q 046380 169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN 248 (434)
Q Consensus 169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~ 248 (434)
....+++|+.|++++ ..+..+. -+..+++|+.|.|++|..... .. ...+++|+.|.++++...
T Consensus 38 ~~~~L~~L~~L~l~~------n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~---------~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 38 TQNELNSIDQIIANN------SDIKSVQ-GIQYLPNVTKLFLNGNKLTDI---------KP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp CHHHHTTCCCCBCTT------CCCCCCT-TGGGCTTCCEEECTTSCCCCC---------GG-GGGCTTCCEEECCSSCCC
T ss_pred chhcCCCCCEEECcC------CCCCCCh-HHccCCCCCEEEeeCCCCCCC---------hh-hccCCCCCEEECcCCCCC
Confidence 456889999999998 5552222 267799999999999987432 22 457899999999887665
Q ss_pred chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecC
Q 046380 249 DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGG 327 (434)
Q Consensus 249 ~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~ 327 (434)
+.. .+..+++|+.|++++|.+..+|. ...+++|+.|++++|.--....+ .+++|+.|+++++... +... +
T Consensus 101 ~l~---~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~--~~~~-l 171 (605)
T 1m9s_A 101 DLS---SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--DIVP-L 171 (605)
T ss_dssp CCT---TSTTCTTCCEEECTTSCCCCCGG---GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC--CCGG-G
T ss_pred CCh---hhccCCCCCEEEecCCCCCCCcc---ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCC--Cchh-h
Confidence 532 46789999999999998887753 45688999999998754333334 6899999999987643 2222 6
Q ss_pred CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc
Q 046380 328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK 371 (434)
Q Consensus 328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~ 371 (434)
..+++|+.|.|+++ .++.- . -+..+++|+.|+|++|.+..
T Consensus 172 ~~l~~L~~L~Ls~N-~i~~l--~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 172 AGLTKLQNLYLSKN-HISDL--R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCTTCCEEECCSS-CCCBC--G-GGTTCTTCSEEECCSEEEEC
T ss_pred ccCCCCCEEECcCC-CCCCC--h-HHccCCCCCEEEccCCcCcC
Confidence 77899999999988 44432 2 24688999999999998743
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.91 E-value=1.7e-09 Score=100.00 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=122.0
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++.+. ...+|...|....+|++|+|+++.+.. +++. +..+++|++|++++
T Consensus 37 ~~l~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~--------i~~~~~~~l~~L~~L~l~~------ 94 (270)
T 2o6q_A 37 ADTKKLDLQSNK--------LSSLPSKAFHRLTKLRLLYLNDNKLQT--------LPAGIFKELKNLETLWVTD------ 94 (270)
T ss_dssp TTCSEEECCSSC--------CSCCCTTSSSSCTTCCEEECCSSCCSC--------CCTTTTSSCTTCCEEECCS------
T ss_pred CCCCEEECcCCC--------CCeeCHHHhcCCCCCCEEECCCCccCe--------eChhhhcCCCCCCEEECCC------
Confidence 578889887665 455665545443339999999998732 2233 35799999999998
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
..+ ......+..+++|++|.++++...... ......+++|++|+++++...... ...+..+++|+.|+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLP--------PRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLY 165 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeC--------HHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEec
Confidence 555 323345677999999999998764321 112246789999999876554322 1235788999999999
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccC
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHG 318 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~ 318 (434)
+|.+..+|... ...+++|++|+++++.--... .+ .+++|+.|++.++..
T Consensus 166 ~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 166 NNQLKRVPEGA-FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCSCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCcEeChhH-hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 99988876421 245789999999987422211 23 589999999988653
No 96
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.87 E-value=1.3e-09 Score=73.92 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=33.2
Q ss_pred CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcc
Q 046380 3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHW 41 (434)
Q Consensus 3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw 41 (434)
..+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999753
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.80 E-value=1.6e-08 Score=104.58 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=101.0
Q ss_pred eccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce---ee-cCC
Q 046380 231 ENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV---EI-HSP 306 (434)
Q Consensus 231 ~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~---~~-~~p 306 (434)
...+++|+.+.+.............+..+++++.++++.+.+...+.. ....+++|+.|+++++.....+ .+ .++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccccccchhhhhcccccccccccccccccccccccccccccccccc-ccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 345677888777644332222222456788889999988877665331 2345678999999887543322 23 588
Q ss_pred cccEEEeccccCccccee-ecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccc---cccccccccc
Q 046380 307 NLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKG---HLEIYSLTLK 382 (434)
Q Consensus 307 ~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~---~~~~~~~~L~ 382 (434)
+|+.|+++++... ++. ..+..+++|++|+++++ .++.-. ...+..+++|+.|+|++|++..- .+.....+|+
T Consensus 495 ~L~~L~Ls~N~L~--~l~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 495 NLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHN-NFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp TCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTS-CCCBCC-CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred ccCEEECCCCccC--CcChHHHcCCCCCCEEECCCC-cCCCCC-hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 9999999987643 322 23567899999999987 332210 11236789999999999987432 2222235799
Q ss_pred eeEeccCCc
Q 046380 383 TLVVHGCDH 391 (434)
Q Consensus 383 ~L~l~~c~~ 391 (434)
.|++++++.
T Consensus 571 ~L~L~~Np~ 579 (635)
T 4g8a_A 571 FLNLTQNDF 579 (635)
T ss_dssp EEECTTCCB
T ss_pred EEEeeCCCC
Confidence 999987543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.80 E-value=1.4e-08 Score=103.54 Aligned_cols=182 Identities=13% Similarity=0.050 Sum_probs=111.3
Q ss_pred hcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccc
Q 046380 109 LRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 109 ~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
...+++.|+++.+. ...+|..++ .+ |++|+|++|.+.. + | ..+++|++|+|++
T Consensus 57 ~~~~L~~L~Ls~n~--------L~~lp~~l~--~~-L~~L~Ls~N~l~~--------i-p--~~l~~L~~L~Ls~----- 109 (571)
T 3cvr_A 57 LINQFSELQLNRLN--------LSSLPDNLP--PQ-ITVLEITQNALIS--------L-P--ELPASLEYLDACD----- 109 (571)
T ss_dssp HHTTCSEEECCSSC--------CSCCCSCCC--TT-CSEEECCSSCCSC--------C-C--CCCTTCCEEECCS-----
T ss_pred ccCCccEEEeCCCC--------CCccCHhHc--CC-CCEEECcCCCCcc--------c-c--cccCCCCEEEccC-----
Confidence 34689999987665 445777664 34 9999999988732 2 3 5678999999998
Q ss_pred eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+.+..+.. +. .+|+.|.+++|.... ++. .+++|+.|+++++.... +...+++|+.|+++
T Consensus 110 -N~l~~ip~-l~--~~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls 168 (571)
T 3cvr_A 110 -NRLSTLPE-LP--ASLKHLDVDNNQLTM---------LPE---LPALLEYINADNNQLTM-----LPELPTSLEVLSVR 168 (571)
T ss_dssp -SCCSCCCC-CC--TTCCEEECCSSCCSC---------CCC---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECC
T ss_pred -CCCCCcch-hh--cCCCEEECCCCcCCC---------CCC---cCccccEEeCCCCccCc-----CCCcCCCcCEEECC
Confidence 44412222 22 289999999887632 222 56778888877665443 11256788888888
Q ss_pred ccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcc-------cEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380 269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNL-------ETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF 341 (434)
Q Consensus 269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L-------~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~ 341 (434)
+|.++.+|. + .++|+.|+++++.--....+ .++| +.|+++++..+ .+......+++|++|+++++
T Consensus 169 ~N~L~~lp~-l----~~~L~~L~Ls~N~L~~lp~~-~~~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 169 NNQLTFLPE-L----PESLEALDVSTNLLESLPAV-PVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCSCCCC-C----CTTCCEEECCSSCCSSCCCC-C--------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCCCcch-h----hCCCCEEECcCCCCCchhhH-HHhhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCC
Confidence 887777775 2 16777777776532111111 1145 66776665533 23333334667777777666
Q ss_pred cCCcHH
Q 046380 342 LGLRNK 347 (434)
Q Consensus 342 ~~~~~~ 347 (434)
.++..
T Consensus 241 -~l~~~ 245 (571)
T 3cvr_A 241 -PLSSR 245 (571)
T ss_dssp -SCCHH
T ss_pred -cCCCc
Confidence 44443
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.76 E-value=7.9e-09 Score=88.17 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=78.8
Q ss_pred CCCeEEEEEeecCCCCCCCCcc--ccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHY--ALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~--~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|++..+. .. .+|..+....+ |++|++++|.+.. + .....+++|++|++++
T Consensus 24 ~~L~~L~l~~n~--------l~~~~i~~~~~~l~~-L~~L~l~~n~l~~--------~-~~~~~l~~L~~L~Ls~----- 80 (168)
T 2ell_A 24 AAVRELVLDNCK--------SNDGKIEGLTAEFVN-LEFLSLINVGLIS--------V-SNLPKLPKLKKLELSE----- 80 (168)
T ss_dssp TSCSEEECCSCB--------CBTTBCSSCCGGGGG-CCEEEEESSCCCC--------C-SSCCCCSSCCEEEEES-----
T ss_pred ccCCEEECCCCC--------CChhhHHHHHHhCCC-CCEEeCcCCCCCC--------h-hhhccCCCCCEEECcC-----
Confidence 568888887665 22 56655444555 8888888887732 1 4566788888888888
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH--HHHhccCCCCcEE
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF--ESALSKFSNLETL 265 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L 265 (434)
+.+ +.+...+..+++|+.|++++|...+... ......+++|+.|+++++....... ...+..+++|+.|
T Consensus 81 -N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 81 -NRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST-------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp -CCCCSCCCHHHHHCTTCCEEECBSSSCCSSGG-------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred -CcCchHHHHHHhhCCCCCEEeccCCccCcchh-------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 555 3356666778888888888887633210 0112234555555555443332111 1234455555555
Q ss_pred EeeccccccCC
Q 046380 266 KLLSSVFGKLP 276 (434)
Q Consensus 266 ~l~~~~~~~~p 276 (434)
++++|....+|
T Consensus 153 ~l~~n~~~~~~ 163 (168)
T 2ell_A 153 DGYDREDQEAP 163 (168)
T ss_dssp TTEETTSCBCC
T ss_pred cCCCCChhhcc
Confidence 55555444444
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.74 E-value=1.1e-08 Score=98.19 Aligned_cols=65 Identities=5% Similarity=0.004 Sum_probs=37.9
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChH-HHHHhcCCCcce
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAP-RLNYFQCSGIRD 207 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l-~~~~~~cp~L~~ 207 (434)
...+|..++ .+ +++|+|+++.+.. +++ .+.++++|++|+|++ ..+ +.+ ...+.++++|++
T Consensus 21 Lt~iP~~l~--~~-l~~L~Ls~N~i~~--------i~~~~f~~l~~L~~L~Ls~------N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 21 VTEIPSDLP--RN-AIELRFVLTKLRV--------IQKGAFSGFGDLEKIEISQ------NDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp CCSCCTTCC--TT-CSEEEEESCCCSE--------ECTTSSTTCTTCCEEEEEC------CTTCCEECTTSBCSCTTCCE
T ss_pred CCccCcCcC--CC-CCEEEccCCcCCC--------cCHHHHcCCCCCCEEECcC------CCCCCccChhHhhcchhhhh
Confidence 456666553 23 8888888887732 233 346788888888887 332 211 123455666665
Q ss_pred eeecc
Q 046380 208 FDEAF 212 (434)
Q Consensus 208 L~l~~ 212 (434)
+....
T Consensus 84 ~l~~~ 88 (350)
T 4ay9_X 84 IRIEK 88 (350)
T ss_dssp EEEEE
T ss_pred hhccc
Confidence 44433
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.73 E-value=7.3e-09 Score=94.61 Aligned_cols=159 Identities=15% Similarity=0.113 Sum_probs=92.4
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..+. .. |++|+|+++.+.. ++ ..+..+++|++|+|++ ..+ +.....+..+++|++|
T Consensus 26 l~~~p~~~~--~~-l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 26 LDSVPSGIP--AD-TEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDY------NQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp CSSCCSCCC--TT-CCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTT------SCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCCCCC--CC-CCEEEccCCCcCc--------cCHhHhcCcccCCEEECCC------CcCCccCHhHhccCCcCCEE
Confidence 445555443 23 7888888877622 11 2455778888888877 444 2223345667788888
Q ss_pred eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380 209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK 288 (434)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~ 288 (434)
++++|...... ...+..+++|+.|++++|.+..+|... ...+++|+
T Consensus 89 ~L~~n~l~~~~---------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~ 134 (251)
T 3m19_A 89 GLANNQLASLP---------------------------------LGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLK 134 (251)
T ss_dssp ECTTSCCCCCC---------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC
T ss_pred ECCCCcccccC---------------------------------hhHhcccCCCCEEEcCCCcCCCcChhH-hccCCccc
Confidence 88777653210 012345566666666666666554321 13355666
Q ss_pred EEEeecCCCCcce--ee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCcc
Q 046380 289 LVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFL 342 (434)
Q Consensus 289 ~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~ 342 (434)
+|+++++.--... .+ .+++|+.|+++++... ++. ..+..+++|++|.++++.
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCC
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC--ccCHHHHhCCCCCCEEEeeCCc
Confidence 6666665321111 23 4678888888776543 222 234567889999998873
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.72 E-value=1.1e-08 Score=93.47 Aligned_cols=171 Identities=10% Similarity=0.089 Sum_probs=117.6
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF 223 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~ 223 (434)
.++++++++.+.. +|... .++|++|+|++ ..+ +.....+.++++|++|++++|......
T Consensus 16 ~~~l~~~~~~l~~--------~p~~~--~~~l~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---- 75 (251)
T 3m19_A 16 KKEVDCQGKSLDS--------VPSGI--PADTEKLDLQS------TGLATLSDATFRGLTKLTWLNLDYNQLQTLS---- 75 (251)
T ss_dssp GTEEECTTCCCSS--------CCSCC--CTTCCEEECTT------SCCCCCCTTTTTTCTTCCEEECTTSCCCCCC----
T ss_pred CeEEecCCCCccc--------cCCCC--CCCCCEEEccC------CCcCccCHhHhcCcccCCEEECCCCcCCccC----
Confidence 6778887776622 12222 26899999988 555 322334667889999999888662210
Q ss_pred ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce--
Q 046380 224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-- 301 (434)
Q Consensus 224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-- 301 (434)
...+..+++|+.|++++|.+..+|... ...+++|++|+++++.--...
T Consensus 76 -----------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~ 125 (251)
T 3m19_A 76 -----------------------------AGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSG 125 (251)
T ss_dssp -----------------------------TTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTT
T ss_pred -----------------------------HhHhccCCcCCEEECCCCcccccChhH-hcccCCCCEEEcCCCcCCCcChh
Confidence 113567899999999999998876422 245789999999987422221
Q ss_pred ee-cCCcccEEEeccccCcccceee-cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 302 EI-HSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 302 ~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
.+ .+++|++|+++++... ++.. .+..+++|++|+++++ .+... ....+..+++|+.|+++++++
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTN-QLQSV-PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSCCB
T ss_pred HhccCCcccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCCce
Confidence 23 5899999999997644 3322 3567899999999988 33321 112346789999999999987
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.72 E-value=1.9e-08 Score=92.64 Aligned_cols=139 Identities=11% Similarity=0.111 Sum_probs=87.1
Q ss_pred eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380 145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF 223 (434)
Q Consensus 145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~ 223 (434)
|++|++++|.+ .. +....+++|++|++++ ..+..+.. +..+++|++|++++|.....
T Consensus 43 L~~L~l~~n~i~~l----------~~l~~l~~L~~L~L~~------N~i~~~~~-l~~l~~L~~L~L~~N~l~~l----- 100 (263)
T 1xeu_A 43 VQNFNGDNSNIQSL----------AGMQFFTNLKELHLSH------NQISDLSP-LKDLTKLEELSVNRNRLKNL----- 100 (263)
T ss_dssp CSEEECTTSCCCCC----------TTGGGCTTCCEEECCS------SCCCCCGG-GTTCSSCCEEECCSSCCSCC-----
T ss_pred CcEEECcCCCcccc----------hHHhhCCCCCEEECCC------CccCCChh-hccCCCCCEEECCCCccCCc-----
Confidence 88888888877 33 4566788888888887 55511122 67788888888888876332
Q ss_pred ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee
Q 046380 224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI 303 (434)
Q Consensus 224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~ 303 (434)
..... ++|+.|+++++...+.. .+..+++|+.|++++|.++.+|. ...+++|+.|+++++.--....+
T Consensus 101 ----~~~~~--~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~---l~~l~~L~~L~L~~N~i~~~~~l 168 (263)
T 1xeu_A 101 ----NGIPS--ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNTGGL 168 (263)
T ss_dssp ----TTCCC--SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG---GGGCTTCCEEECTTSCCCBCTTS
T ss_pred ----Ccccc--CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCChH---HccCCCCCEEECCCCcCcchHHh
Confidence 11111 77777777766555431 36677888888888887776652 34466677777766532222222
Q ss_pred -cCCcccEEEecccc
Q 046380 304 -HSPNLETFVYKAGH 317 (434)
Q Consensus 304 -~~p~L~~L~l~~~~ 317 (434)
.+++|+.|+++++.
T Consensus 169 ~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEeCCCCc
Confidence 45666666665544
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.70 E-value=7.9e-08 Score=84.28 Aligned_cols=127 Identities=10% Similarity=0.064 Sum_probs=57.8
Q ss_pred cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCc--ceee-cCCccc
Q 046380 233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG--PVEI-HSPNLE 309 (434)
Q Consensus 233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~--~~~~-~~p~L~ 309 (434)
.+++|++|+++++...+.. .+..+++|+.|++++|.+..++. ...+++|++|+++++.--. ...+ .+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCGG---GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcchh---hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4556666666654443211 24556666666666664444331 2235555555555543211 1122 355555
Q ss_pred EEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 310 TFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 310 ~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
+|+++++..... .......+++|++|.++++..+++- . .+..+|+|+.|++++|.+
T Consensus 116 ~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 116 LLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCC
T ss_pred EEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCC
Confidence 555555443210 0112234455555555555212221 1 133455555555555554
No 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=3.5e-08 Score=94.98 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=94.7
Q ss_pred cccCcccceEEEeeecccc-eEe-eC--hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeE
Q 046380 170 NFFNPSVRRLVVRGCMALQ-GFE-MD--APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFM 245 (434)
Q Consensus 170 ~~~~~~L~~L~L~~c~~~~-~~~-~~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~ 245 (434)
...+++|+.|.+.....-. .+. .+ .+..++..+|+|++|.+.++.... ... +..|+|++|.+..+
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---------l~~--~~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---------IGK--KPRPNLKSLEIISG 203 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---------CCS--CBCTTCSEEEEECS
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---------ecc--ccCCCCcEEEEecC
Confidence 3456677777775410000 000 11 477888999999999999874311 111 34899999999877
Q ss_pred EeCchhHHHHh-ccCCCCcEEEeecc--ccc------cCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccc
Q 046380 246 VLNDRTFESAL-SKFSNLETLKLLSS--VFG------KLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAG 316 (434)
Q Consensus 246 ~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~------~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~ 316 (434)
...+.....+. ..+|+|+.|+|..+ ... .+...+....|++|++|.+.+|
T Consensus 204 ~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--------------------- 262 (362)
T 2ra8_A 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--------------------- 262 (362)
T ss_dssp BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC---------------------
T ss_pred CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC---------------------
Confidence 77666555443 47899999998632 111 1111111122444555544443
Q ss_pred cCccc--ceeecCCCCCCccEEEEcCccCCcHHHHHHHH---hcCCccceEEeeccccc
Q 046380 317 HGEIA--SFHFGGRGFGNIKTLAVNGFLGLRNKSLEELI---SACILLENLYLNSCAIP 370 (434)
Q Consensus 317 ~~~~~--~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~---~~~p~Le~L~l~~~~~~ 370 (434)
..... ......+.+++|++|+++.+ .+++.+...+. +++++|++|+|++|.+.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 22111 11112234667777777665 56666555544 35677777777777663
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.68 E-value=2.4e-08 Score=91.95 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=69.1
Q ss_pred hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCcc
Q 046380 256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIK 334 (434)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk 334 (434)
+..+++|+.|++++|.+..+|... .++|++|+++++.--....+ .+++|+.|+++++..+ .+ .....+++|+
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~~~----~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~--~~-~~l~~l~~L~ 153 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK--SI-VMLGFLSKLE 153 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTTCC----CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC--BC-GGGGGCTTCC
T ss_pred hccCCCCCEEECCCCccCCcCccc----cCcccEEEccCCccCCChhhcCcccccEEECCCCcCC--CC-hHHccCCCCC
Confidence 566777778888777777765421 16788888777643222234 5788888888877643 22 1355678888
Q ss_pred EEEEcCccCCcHHHHHHHHhcCCccceEEeeccccc
Q 046380 335 TLAVNGFLGLRNKSLEELISACILLENLYLNSCAIP 370 (434)
Q Consensus 335 ~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~ 370 (434)
+|.++++ .++.. ..+..+++|+.|+++++.+.
T Consensus 154 ~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 154 VLDLHGN-EITNT---GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EEECTTS-CCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred EEECCCC-cCcch---HHhccCCCCCEEeCCCCccc
Confidence 8888887 44333 33457888999999888763
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.64 E-value=3.2e-08 Score=82.50 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=60.4
Q ss_pred ccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeec
Q 046380 133 ALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEA 211 (434)
Q Consensus 133 ~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~ 211 (434)
.+|..+..+.+ |++|++++|.+.. + +....+++|++|++++ +.+ +.+...+..+++|++|+++
T Consensus 33 ~~~~~~~~l~~-L~~L~l~~n~l~~--------~-~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 33 KLEGLTDEFEE-LEFLSTINVGLTS--------I-ANLPKLNKLKKLELSD------NRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp BCCSCCTTCTT-CCEEECTTSCCCC--------C-TTCCCCTTCCEEECCS------SCCCSCTHHHHHHCTTCCEEECT
T ss_pred HHHHHHhhcCC-CcEEECcCCCCCC--------c-hhhhcCCCCCEEECCC------CcccchHHHHhhhCCCCCEEECC
Confidence 34443333344 6666666655522 1 3344556666666665 333 2344445556666666666
Q ss_pred cccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC--cchhhccCccE
Q 046380 212 FVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS--LSSAILKKLKL 289 (434)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~--~~~~~~~~L~~ 289 (434)
+|.. .+......+..+++|+.|++++|.+...|.. -....+++|++
T Consensus 97 ~N~i--------------------------------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 97 GNKI--------------------------------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TSCC--------------------------------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCcC--------------------------------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 5544 3222223567778888888888877766530 11344566666
Q ss_pred EEee
Q 046380 290 VRME 293 (434)
Q Consensus 290 L~l~ 293 (434)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 6543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=3.4e-08 Score=100.84 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=113.4
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL 224 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l 224 (434)
|++|+++++.+.. +|+.. +++|++|+|++ +.+..+. ..+++|+.|++++|....
T Consensus 61 L~~L~Ls~n~L~~--------lp~~l--~~~L~~L~Ls~------N~l~~ip---~~l~~L~~L~Ls~N~l~~------- 114 (571)
T 3cvr_A 61 FSELQLNRLNLSS--------LPDNL--PPQITVLEITQ------NALISLP---ELPASLEYLDACDNRLST------- 114 (571)
T ss_dssp CSEEECCSSCCSC--------CCSCC--CTTCSEEECCS------SCCSCCC---CCCTTCCEEECCSSCCSC-------
T ss_pred ccEEEeCCCCCCc--------cCHhH--cCCCCEEECcC------CCCcccc---cccCCCCEEEccCCCCCC-------
Confidence 9999999998732 23333 48999999998 5552222 568999999999997732
Q ss_pred cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeec
Q 046380 225 EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIH 304 (434)
Q Consensus 225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 304 (434)
++. ...+|++|+++++..... ...+++|+.|++++|.++.+|. .+++|++|+++++.--....+.
T Consensus 115 --ip~---l~~~L~~L~Ls~N~l~~l-----p~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~l~ 179 (571)
T 3cvr_A 115 --LPE---LPASLKHLDVDNNQLTML-----PELPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPELP 179 (571)
T ss_dssp --CCC---CCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCC
T ss_pred --cch---hhcCCCEEECCCCcCCCC-----CCcCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcchhh
Confidence 222 122888998887655441 1267889999999998888775 3678888888876422211123
Q ss_pred CCcccEEEeccccCcccceeecCCCCCCc-------cEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 305 SPNLETFVYKAGHGEIASFHFGGRGFGNI-------KTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 305 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L-------k~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
++|+.|+++++..+ .+.. +.. +| +.|+++++ .++ .++.-+..+++|+.|+|++|++
T Consensus 180 -~~L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~--~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCREN-RIT--HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -TTCCEEECCSSCCS--SCCC-CC----------CCEEEECCSS-CCC--CCCGGGGGSCTTEEEECCSSSC
T ss_pred -CCCCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCC-cce--ecCHHHhcCCCCCEEEeeCCcC
Confidence 78888888887643 2222 111 55 77777776 333 1222223477777777777776
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.63 E-value=2.7e-08 Score=95.59 Aligned_cols=218 Identities=10% Similarity=-0.016 Sum_probs=139.5
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-ccccccccccccc-ccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~ 188 (434)
+++++|+++... ...+|...|....+|++|+|++|.+ +. +++ .+.++++|+++....+..+.
T Consensus 30 ~~l~~L~Ls~N~--------i~~i~~~~f~~l~~L~~L~Ls~N~i~~~--------i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 30 RNAIELRFVLTK--------LRVIQKGAFSGFGDLEKIEISQNDVLEV--------IEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp TTCSEEEEESCC--------CSEECTTSSTTCTTCCEEEEECCTTCCE--------ECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCEEEccCCc--------CCCcCHHHHcCCCCCCEEECcCCCCCCc--------cChhHhhcchhhhhhhcccCCccc
Confidence 689999999776 6788888776555599999999976 32 122 34578888776665532222
Q ss_pred eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEE-eCchhHHHHhcc-CCCCcEEE
Q 046380 189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV-LNDRTFESALSK-FSNLETLK 266 (434)
Q Consensus 189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~-~~~L~~L~ 266 (434)
+ -....+..+++|+.|.+.+|...... ........++..+.+.+.. ....... .+.. ...++.|+
T Consensus 94 ~----l~~~~f~~l~~L~~L~l~~n~l~~~~--------~~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 94 Y----INPEAFQNLPNLQYLLISNTGIKHLP--------DVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILW 160 (350)
T ss_dssp E----ECTTSBCCCTTCCEEEEEEECCSSCC--------CCTTCCBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEE
T ss_pred c----cCchhhhhccccccccccccccccCC--------chhhcccchhhhhhhcccccccccccc-chhhcchhhhhhc
Confidence 1 12344678999999999999774321 1112345566677765422 1110101 1223 35688999
Q ss_pred eeccccccCCCCcchhhccCccEEEeecCCCCcceee----cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc
Q 046380 267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI----HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL 342 (434)
Q Consensus 267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~ 342 (434)
+++|.++.+|.... ...+|++|.+.++..++.+.- .+++|+.|+++++..+ ++. ...+.+|++|.+.++.
T Consensus 161 L~~N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp--~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 161 LNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLP--SYGLENLKKLRARSTY 234 (350)
T ss_dssp CCSSCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CCC--SSSCTTCCEEECTTCT
T ss_pred cccccccCCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--ccC--hhhhccchHhhhccCC
Confidence 99999988875422 235788888888777666542 5789999999987643 322 2446788888876663
Q ss_pred CCcHHHHHHHHhcCCccceEEeec
Q 046380 343 GLRNKSLEELISACILLENLYLNS 366 (434)
Q Consensus 343 ~~~~~~l~~l~~~~p~Le~L~l~~ 366 (434)
... .++. +..+++|+.+++.+
T Consensus 235 ~l~--~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 235 NLK--KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCC--CCCC-TTTCCSCCEEECSC
T ss_pred CcC--cCCC-chhCcChhhCcCCC
Confidence 221 1222 35788889888865
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.61 E-value=5.8e-08 Score=100.38 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=28.0
Q ss_pred CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC
Q 046380 234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC 295 (434)
Q Consensus 234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c 295 (434)
+++|++|+++++...... ...+..+++|+.|++++|.+..++..-....+++|++|+++++
T Consensus 123 L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 455555555443322210 0123455666666666665544332122334555666665554
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.61 E-value=1.5e-08 Score=86.41 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=76.0
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL 224 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l 224 (434)
|++|++++|.+.. ..++.....+++|++|++++ +.+..+ ..+..+++|++|++++|.....
T Consensus 26 L~~L~l~~n~l~~------~~i~~~~~~l~~L~~L~l~~------n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~------ 86 (168)
T 2ell_A 26 VRELVLDNCKSND------GKIEGLTAEFVNLEFLSLIN------VGLISV-SNLPKLPKLKKLELSENRIFGG------ 86 (168)
T ss_dssp CSEEECCSCBCBT------TBCSSCCGGGGGCCEEEEES------SCCCCC-SSCCCCSSCCEEEEESCCCCSC------
T ss_pred CCEEECCCCCCCh------hhHHHHHHhCCCCCEEeCcC------CCCCCh-hhhccCCCCCEEECcCCcCchH------
Confidence 9999999988741 02344557889999999998 444222 4466788888898888877321
Q ss_pred cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC--cchhhccCccEEEeecC
Q 046380 225 EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS--LSSAILKKLKLVRMENC 295 (434)
Q Consensus 225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~--~~~~~~~~L~~L~l~~c 295 (434)
.......+++|++|+++++...+......+..+++|+.|++++|.+..+|.. .....+++|++|++.+|
T Consensus 87 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 87 --LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp --CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred --HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 1222223666666666655544422212445566666666666666555430 01223445555555544
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=9.9e-10 Score=112.42 Aligned_cols=184 Identities=11% Similarity=0.106 Sum_probs=109.2
Q ss_pred ccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCC-----cccccccccceeeccCCceeEEE-EEe
Q 046380 171 FFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDH-----FCCRFLEFKVANENSMSSLETLV-FSF 244 (434)
Q Consensus 171 ~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~-----~~~~~l~~~~~~~~~~p~L~~L~-l~~ 244 (434)
..+++|+.|+|++ ..+..++.-+.+|++|++|++.++..... ..+......+.....+++|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~------n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSV------EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCH------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred ccCccceeccCCh------hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh
Confidence 4577888888877 33335566677788888888766541000 00000011111222344555554 221
Q ss_pred EEeC--------chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc-eee-cCCcccEEEec
Q 046380 245 MVLN--------DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP-VEI-HSPNLETFVYK 314 (434)
Q Consensus 245 ~~~~--------~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~-~~~-~~p~L~~L~l~ 314 (434)
.... ...+..+ ....|+.|++++|.++.+|. ...+++|+.|+++++.--.. ..+ .+++|+.|+++
T Consensus 420 n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~lp~---~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 420 AYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred cccchhhhhhhhccccccc--CccCceEEEecCCCCCCCcC---ccccccCcEeecCcccccccchhhhcCCCCCEEECC
Confidence 1000 0111111 12368899999998888874 56788899999988642211 123 68899999998
Q ss_pred cccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 315 AGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
++..+ ++. .+..+++|++|+++++ .++....+.-+..+++|+.|++++|.+
T Consensus 495 ~N~l~--~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 495 DNALE--NVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCC--CCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCC--CCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 87644 333 5677889999999888 443321133346889999999999887
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.45 E-value=5.2e-08 Score=86.14 Aligned_cols=155 Identities=13% Similarity=0.166 Sum_probs=88.9
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..+.. + |++|+++++.+.. +++ ....+++|++|++++ ..+ +.....+..+++|++|
T Consensus 19 l~~~p~~~~~--~-l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 19 RTSVPTGIPA--Q-TTYLDLETNSLKS--------LPNGVFDELTSLTQLYLGG------NKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp CSSCCSCCCT--T-CSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCCCCCC--C-CcEEEcCCCccCc--------CChhhhcccccCcEEECCC------CccCccChhhcCCCCCcCEE
Confidence 3445554432 3 8899998887722 123 345788899999988 444 2223345678889999
Q ss_pred eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380 209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK 288 (434)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~ 288 (434)
++++|...... ......+++|++|++++....... ...+..+++|+.|++++|.+..+|... ...+++|+
T Consensus 82 ~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~ 151 (208)
T 2o6s_A 82 NLSTNQLQSLP--------NGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQ 151 (208)
T ss_dssp ECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCC
T ss_pred ECCCCcCCccC--------HhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHH-hccCCCcc
Confidence 88888663210 111234566777777655433211 113456677777777777666655321 23455666
Q ss_pred EEEeecCCCCcceeecCCcccEEEeccc
Q 046380 289 LVRMENCRFDGPVEIHSPNLETFVYKAG 316 (434)
Q Consensus 289 ~L~l~~c~~l~~~~~~~p~L~~L~l~~~ 316 (434)
+|++++++.. -.+++|+.|.+..+
T Consensus 152 ~L~l~~N~~~----~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 152 YIWLHDNPWD----CTCPGIRYLSEWIN 175 (208)
T ss_dssp EEECCSCCBC----CCTTTTHHHHHHHH
T ss_pred EEEecCCCee----cCCCCHHHHHHHHH
Confidence 6666664211 13555666554443
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.38 E-value=6.3e-08 Score=80.71 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=6.6
Q ss_pred CCcceeeeccccC
Q 046380 203 SGIRDFDEAFVYR 215 (434)
Q Consensus 203 p~L~~L~l~~~~~ 215 (434)
++|++|.+++|..
T Consensus 17 ~~l~~L~l~~n~l 29 (149)
T 2je0_A 17 SDVKELVLDNSRS 29 (149)
T ss_dssp GGCSEEECTTCBC
T ss_pred ccCeEEEccCCcC
Confidence 4455555555543
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.37 E-value=3.1e-07 Score=82.56 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=76.1
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..+. .+ |++|+|+++.+.. + +..+..+++|++|+|++ ..+ .-....+..+++|+.|
T Consensus 31 l~~ip~~~~--~~-L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~------N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 31 HASVPAGIP--TN-AQILYLHDNQITK--------LEPGVFDSLINLKELYLGS------NQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp CSSCCSCCC--TT-CSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred cCccCCCCC--CC-CCEEEcCCCccCc--------cCHHHhhCccCCcEEECCC------CCCCCcChhhcccCCCcCEE
Confidence 445555443 33 8888888887722 1 23456788888888887 444 2222345667888888
Q ss_pred eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380 209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK 288 (434)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~ 288 (434)
++++|...... ...+..+++|+.|++++|.+..+|.. ...+++|+
T Consensus 94 ~Ls~N~l~~l~---------------------------------~~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~L~ 138 (229)
T 3e6j_A 94 DLGTNQLTVLP---------------------------------SAVFDRLVHLKELFMCCNKLTELPRG--IERLTHLT 138 (229)
T ss_dssp ECCSSCCCCCC---------------------------------TTTTTTCTTCCEEECCSSCCCSCCTT--GGGCTTCS
T ss_pred ECCCCcCCccC---------------------------------hhHhCcchhhCeEeccCCcccccCcc--cccCCCCC
Confidence 88877653210 01234455666666666665555543 24455666
Q ss_pred EEEeecCCCCc--ceee-cCCcccEEEecccc
Q 046380 289 LVRMENCRFDG--PVEI-HSPNLETFVYKAGH 317 (434)
Q Consensus 289 ~L~l~~c~~l~--~~~~-~~p~L~~L~l~~~~ 317 (434)
+|+++++.--. .-.+ .+++|+.|.+.++.
T Consensus 139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 66665542111 1112 46677777776654
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.37 E-value=1.5e-07 Score=80.83 Aligned_cols=107 Identities=11% Similarity=-0.014 Sum_probs=50.2
Q ss_pred eeEEEEeeeeeccccccccccccccccc-CcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFF-NPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF 223 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~ 223 (434)
|+.|++++|.+.. + +.... .++|++|++++ +.+..+ ..+..+++|+.|++++|....
T Consensus 21 L~~L~l~~n~l~~--------i-~~~~~~~~~L~~L~Ls~------N~l~~~-~~l~~l~~L~~L~Ls~N~l~~------ 78 (176)
T 1a9n_A 21 DRELDLRGYKIPV--------I-ENLGATLDQFDAIDFSD------NEIRKL-DGFPLLRRLKTLLVNNNRICR------ 78 (176)
T ss_dssp CEEEECTTSCCCS--------C-CCGGGGTTCCSEEECCS------SCCCEE-CCCCCCSSCCEEECCSSCCCE------
T ss_pred ceEEEeeCCCCch--------h-HHhhhcCCCCCEEECCC------CCCCcc-cccccCCCCCEEECCCCcccc------
Confidence 6666666666522 1 22232 33666666666 333111 234456666666666665421
Q ss_pred ccccc-eeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCC
Q 046380 224 LEFKV-ANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLP 276 (434)
Q Consensus 224 l~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p 276 (434)
.. .....+|+|++|+++++...+......+..+++|+.|++++|.+..+|
T Consensus 79 ---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 79 ---IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp ---ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred ---cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 11 011234444444444433322111113445566666666666555444
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.33 E-value=1.6e-07 Score=90.62 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=67.9
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccc-cc-cCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NF-FNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD 207 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~-~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~ 207 (434)
...+|..+.. . ++.|+|+++.+.. +++. .. .+++|++|+|++ ..+ ......+.++++|++
T Consensus 30 l~~iP~~~~~--~-l~~L~Ls~N~l~~--------l~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 30 LPNVPQSLPS--Y-TALLDLSHNNLSR--------LRAEWTPTRLTNLHSLLLSH------NHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp CSSCCSSCCT--T-CSEEECCSSCCCE--------ECTTSSSSCCTTCCEEECCS------SCCCEECTTTTTTCTTCCE
T ss_pred cCccCccCCC--C-CCEEECCCCCCCc--------cChhhhhhcccccCEEECCC------CcCCccChhhccCCCCCCE
Confidence 4455655433 2 7888888887722 1222 33 788888888887 444 222234567888888
Q ss_pred eeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCC
Q 046380 208 FDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPS 277 (434)
Q Consensus 208 L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~ 277 (434)
|++++|..... .......+++|+.|+++++...... ...+..+++|+.|++++|.+..+|.
T Consensus 93 L~Ls~N~l~~~--------~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 93 LDLSSNHLHTL--------DEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp EECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred EECCCCcCCcC--------CHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCH
Confidence 88888765211 0111224566666666554433211 1134556666666666666666554
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.33 E-value=4.4e-07 Score=81.03 Aligned_cols=69 Identities=6% Similarity=0.013 Sum_probs=46.0
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..+. .+ |+.|+++++.+.. +++ .+..+++|++|+|++ ..+ ......+.++++|++|
T Consensus 23 l~~iP~~l~--~~-l~~L~l~~n~i~~--------i~~~~~~~l~~L~~L~Ls~------N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 23 LTEIPTNLP--ET-ITEIRLEQNTIKV--------IPPGAFSPYKKLRRIDLSN------NQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp CSSCCSSCC--TT-CCEEECCSSCCCE--------ECTTSSTTCTTCCEEECCS------SCCCEECTTTTTTCSSCCEE
T ss_pred cCcCCCccC--cC-CCEEECCCCcCCC--------cCHhHhhCCCCCCEEECCC------CcCCCcCHHHhhCCcCCCEE
Confidence 445565543 33 8899998887722 122 456788899999988 444 2223446678888888
Q ss_pred eeccccCC
Q 046380 209 DEAFVYRP 216 (434)
Q Consensus 209 ~l~~~~~~ 216 (434)
++++|...
T Consensus 86 ~Ls~N~l~ 93 (220)
T 2v9t_B 86 VLYGNKIT 93 (220)
T ss_dssp ECCSSCCC
T ss_pred ECCCCcCC
Confidence 88888763
No 119
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=2.3e-07 Score=89.82 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=81.7
Q ss_pred CcccceEEEeeecccceEee-C----hHHHHHh-cCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEE
Q 046380 173 NPSVRRLVVRGCMALQGFEM-D----APRLNYF-QCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV 246 (434)
Q Consensus 173 ~~~L~~L~L~~c~~~~~~~~-~----~l~~~~~-~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~ 246 (434)
.++|++|+|++ +.+ + .+...+. .+++|++|++++|...+. ....+...+++|++|+++++.
T Consensus 71 ~~~L~~L~Ls~------n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 71 LSSLRQLNLAG------VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-------GLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp HTTCCEEECTT------SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-------HHHHTHHHHHTEEEEECCSSC
T ss_pred HhhCCEEEecC------CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-------HHHHHHHHHHhccHhhcCCCC
Confidence 45566666666 334 1 2223232 235677777766654211 011111123355555555555
Q ss_pred eCchhHHHH---h-ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccc
Q 046380 247 LNDRTFESA---L-SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIAS 322 (434)
Q Consensus 247 ~~~~~~~~~---~-~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~ 322 (434)
.++.....+ + ...++|+.|++++|.++..+....+..+ -..++|++|+++++.....+
T Consensus 138 l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L------------------~~~~~L~~L~Ls~N~l~~~g 199 (372)
T 3un9_A 138 LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL------------------AGNTSVTHLSLLHTGLGDEG 199 (372)
T ss_dssp CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH------------------HTCSSCCEEECTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH------------------hcCCCcCEEeCCCCCCCcHH
Confidence 444333222 2 2456677777776655432110000000 02455566666555433221
Q ss_pred ---eeecCCCCCCccEEEEcCccCCcHHHHHHH---HhcCCccceEEeecccccc
Q 046380 323 ---FHFGGRGFGNIKTLAVNGFLGLRNKSLEEL---ISACILLENLYLNSCAIPK 371 (434)
Q Consensus 323 ---~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l---~~~~p~Le~L~l~~~~~~~ 371 (434)
+.......++|++|+++++ .+++.+...+ +..+++|+.|+|++|.+..
T Consensus 200 ~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 200 LELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 1122344567777777777 6666644433 3456777888877777643
No 120
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=9.3e-07 Score=75.34 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=59.3
Q ss_pred CcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhc---CCccceEEeeccc-cccccccc--ccc
Q 046380 306 PNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISA---CILLENLYLNSCA-IPKGHLEI--YSL 379 (434)
Q Consensus 306 p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~---~p~Le~L~l~~~~-~~~~~~~~--~~~ 379 (434)
.+|++|+++++..+..++. ....|++|++|.+++|..+++.++..+.+. +++|+.|+|++|. +++..+.. ..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3456666665544444442 235788888888888877888888888763 5788888888886 43322221 246
Q ss_pred ccceeEeccCCcccee
Q 046380 380 TLKTLVVHGCDHLHFA 395 (434)
Q Consensus 380 ~L~~L~l~~c~~l~~~ 395 (434)
+|++|++++|+.+++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 7888888888877653
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.29 E-value=6e-07 Score=77.03 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=48.7
Q ss_pred hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380 256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT 335 (434)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~ 335 (434)
+..+++|+.|++++|.+..+|... ...+ ++|+.|+++++....-........+++|++
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l---------------------~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGL-DQAL---------------------PDLTELILTNNSLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCH-HHHC---------------------TTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred cccCCCCCEEECCCCcccccCcch-hhcC---------------------CCCCEEECCCCcCCcchhhHhhhcCCCCCE
Confidence 455667777777777666555321 1234 444444444433210000012345667777
Q ss_pred EEEcCccCCcHH--HHHHHHhcCCccceEEeecccc
Q 046380 336 LAVNGFLGLRNK--SLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 336 L~l~~~~~~~~~--~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
|.++++ .++.. ....++..+|+|+.|+++.+..
T Consensus 118 L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 118 LCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777766 22211 2233566888888888888765
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.28 E-value=3.4e-07 Score=81.71 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=41.4
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccccc--ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL--SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD 207 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~ 207 (434)
...+|..+.. . +++|+|+++.+.. +++ .+..+++|++|+|++ ..+ ......+.++++|++
T Consensus 23 l~~iP~~~~~--~-~~~L~L~~N~l~~--------~~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 23 LNKIPEHIPQ--Y-TAELRLNNNEFTV--------LEATGIFKKLPQLRKINFSN------NKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp CSSCCSCCCT--T-CSEEECCSSCCCE--------ECCCCCGGGCTTCCEEECCS------SCCCEECTTTTTTCTTCCE
T ss_pred cccCccCCCC--C-CCEEEcCCCcCCc--------cCchhhhccCCCCCEEECCC------CcCCEECHHHhCCCCCCCE
Confidence 3445554432 2 7788888877622 111 245788888888887 444 222234566788888
Q ss_pred eeeccccC
Q 046380 208 FDEAFVYR 215 (434)
Q Consensus 208 L~l~~~~~ 215 (434)
|++++|..
T Consensus 86 L~Ls~N~l 93 (220)
T 2v70_A 86 ILLTSNRL 93 (220)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 88887766
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.26 E-value=1.3e-07 Score=82.93 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=58.9
Q ss_pred ccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCC
Q 046380 137 VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRP 216 (434)
Q Consensus 137 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~ 216 (434)
.+....+ |++|++++|.+.. + +....+++|++|++++ +.+..+......+|+|++|++++|...
T Consensus 43 ~~~~l~~-L~~L~ls~n~l~~--------l-~~~~~l~~L~~L~l~~------n~l~~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 43 TLSTLKA-CKHLALSTNNIEK--------I-SSLSGMENLRILSLGR------NLIKKIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHTTT-CSEEECSEEEESC--------C-CCHHHHTTCCEEEEEE------EEECSCSSHHHHHHHCSEEEEEEEECC
T ss_pred HHhcCCC-CCEEECCCCCCcc--------c-cccccCCCCCEEECCC------CCcccccchhhcCCcCCEEECcCCcCC
Confidence 3333444 6666666666521 1 3445666666666666 444222233344566666666666552
Q ss_pred CCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc
Q 046380 217 DHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK 274 (434)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 274 (434)
.. . ....+++|+.|+++++...+......+..+++|+.|++++|.+..
T Consensus 107 ~l---------~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 107 SL---------S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CH---------H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cC---------C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 21 1 122345566666665555543322345666777777777665543
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.24 E-value=4.9e-07 Score=81.23 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=84.3
Q ss_pred cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccc
Q 046380 110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~ 188 (434)
.+++++|+++.+. ...++...|....+|++|+|+++.+.. +++. +..+++|++|+|++
T Consensus 39 ~~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~L~~N~l~~--------i~~~~~~~l~~L~~L~Ls~----- 97 (229)
T 3e6j_A 39 PTNAQILYLHDNQ--------ITKLEPGVFDSLINLKELYLGSNQLGA--------LPVGVFDSLTQLTVLDLGT----- 97 (229)
T ss_dssp CTTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS-----
T ss_pred CCCCCEEEcCCCc--------cCccCHHHhhCccCCcEEECCCCCCCC--------cChhhcccCCCcCEEECCC-----
Confidence 3689999998765 445544444443349999999998832 2233 46899999999998
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL 267 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 267 (434)
..+ ......+..+++|++|.+++|..... .. .+..+++|+.|++
T Consensus 98 -N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l---------p~-------------------------~~~~l~~L~~L~L 142 (229)
T 3e6j_A 98 -NQLTVLPSAVFDRLVHLKELFMCCNKLTEL---------PR-------------------------GIERLTHLTHLAL 142 (229)
T ss_dssp -SCCCCCCTTTTTTCTTCCEEECCSSCCCSC---------CT-------------------------TGGGCTTCSEEEC
T ss_pred -CcCCccChhHhCcchhhCeEeccCCccccc---------Cc-------------------------ccccCCCCCEEEC
Confidence 555 23334457799999999999876321 10 2355666777777
Q ss_pred eccccccCCCCcchhhccCccEEEeecC
Q 046380 268 LSSVFGKLPSSLSSAILKKLKLVRMENC 295 (434)
Q Consensus 268 ~~~~~~~~p~~~~~~~~~~L~~L~l~~c 295 (434)
++|.+..+|.. ....+++|+.|.+.+.
T Consensus 143 ~~N~l~~~~~~-~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 143 DQNQLKSIPHG-AFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCCCCTT-TTTTCTTCCEEECTTS
T ss_pred CCCcCCccCHH-HHhCCCCCCEEEeeCC
Confidence 77766665531 1234566777776653
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.24 E-value=5e-07 Score=80.66 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=86.1
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF 190 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~ 190 (434)
+++++|++.... ...++...|....+|++|+|+++.+... .+..+.++++|++|+|++ .
T Consensus 32 ~~l~~L~l~~n~--------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-------~~~~~~~l~~L~~L~Ls~------N 90 (220)
T 2v9t_B 32 ETITEIRLEQNT--------IKVIPPGAFSPYKKLRRIDLSNNQISEL-------APDAFQGLRSLNSLVLYG------N 90 (220)
T ss_dssp TTCCEEECCSSC--------CCEECTTSSTTCTTCCEEECCSSCCCEE-------CTTTTTTCSSCCEEECCS------S
T ss_pred cCCCEEECCCCc--------CCCcCHhHhhCCCCCCEEECCCCcCCCc-------CHHHhhCCcCCCEEECCC------C
Confidence 578889887665 5566665565544499999999987220 124567899999999998 5
Q ss_pred ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380 191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS 269 (434)
Q Consensus 191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 269 (434)
.+ .-....+.++++|+.|.+++|....... ..+..+++|+.|++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---------------------------------~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV---------------------------------DAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEECCS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH---------------------------------HHcCCCCCCCEEECCC
Confidence 55 2333446778999999999987732200 1345566777777777
Q ss_pred cccccCCCCcchhhccCccEEEeec
Q 046380 270 SVFGKLPSSLSSAILKKLKLVRMEN 294 (434)
Q Consensus 270 ~~~~~~p~~~~~~~~~~L~~L~l~~ 294 (434)
|.++.+|... ...+++|++|++++
T Consensus 138 N~l~~~~~~~-~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 138 NKLQTIAKGT-FSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred CcCCEECHHH-HhCCCCCCEEEeCC
Confidence 7766655321 23356677777765
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.20 E-value=3e-07 Score=80.60 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEE
Q 046380 259 FSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLA 337 (434)
Q Consensus 259 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~ 337 (434)
+++|+.|++++|.+..+|. ....+++|++|+++++.--....+ .+++|+.|+++++....-........+++|++|.
T Consensus 69 l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HTTCCEEEEEEEEECSCSS--HHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCCEEECCCCCcccccc--hhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 3444444444444444332 122234444444444321111112 3455556665554422101101245667788888
Q ss_pred EcCccCCc---------HHHHHHHHhcCCccceEE
Q 046380 338 VNGFLGLR---------NKSLEELISACILLENLY 363 (434)
Q Consensus 338 l~~~~~~~---------~~~l~~l~~~~p~Le~L~ 363 (434)
++++ .+. ......++..+|+|+.|+
T Consensus 147 l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 147 LAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8776 222 123345567888888886
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.20 E-value=7.8e-07 Score=78.46 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=83.8
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++... ...++...+....+|++|+++++.+.. +++. +..+++|++|++++
T Consensus 28 ~~l~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~Ls~------ 85 (208)
T 2o6s_A 28 AQTTYLDLETNS--------LKSLPNGVFDELTSLTQLYLGGNKLQS--------LPNGVFNKLTSLTYLNLST------ 85 (208)
T ss_dssp TTCSEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred CCCcEEEcCCCc--------cCcCChhhhcccccCcEEECCCCccCc--------cChhhcCCCCCcCEEECCC------
Confidence 577888877655 445666555443338888888887722 1232 45788888888887
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
..+ ......+..+++|++|+++++...... ......+++|++|++++....... ...+..+++|+.|+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLP--------DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLH 156 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccC--------HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEec
Confidence 444 222334567888888888888663221 111235688888888776544321 1235678888999988
Q ss_pred ccccc
Q 046380 269 SSVFG 273 (434)
Q Consensus 269 ~~~~~ 273 (434)
+|.+.
T Consensus 157 ~N~~~ 161 (208)
T 2o6s_A 157 DNPWD 161 (208)
T ss_dssp SCCBC
T ss_pred CCCee
Confidence 87543
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.19 E-value=5.7e-07 Score=86.63 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=103.2
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccc--cCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeeccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIF--SSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMAL 187 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~ 187 (434)
..++.|+++... ...++...| ...+ |++|+|+++.+.. ++ ..+..+++|++|+|++
T Consensus 39 ~~l~~L~Ls~N~--------l~~l~~~~~~~~l~~-L~~L~L~~N~i~~--------i~~~~~~~l~~L~~L~Ls~---- 97 (361)
T 2xot_A 39 SYTALLDLSHNN--------LSRLRAEWTPTRLTN-LHSLLLSHNHLNF--------ISSEAFVPVPNLRYLDLSS---- 97 (361)
T ss_dssp TTCSEEECCSSC--------CCEECTTSSSSCCTT-CCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS----
T ss_pred CCCCEEECCCCC--------CCccChhhhhhcccc-cCEEECCCCcCCc--------cChhhccCCCCCCEEECCC----
Confidence 568888887665 566777666 3455 9999999998822 12 2467899999999998
Q ss_pred ceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHh---ccCCCCc
Q 046380 188 QGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESAL---SKFSNLE 263 (434)
Q Consensus 188 ~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~---~~~~~L~ 263 (434)
..+ ......+.++++|+.|.+++|..... .......+++|+.|+++++........ .+ ..+++|+
T Consensus 98 --N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~~~~l~~L~ 166 (361)
T 2xot_A 98 --NHLHTLDEFLFSDLQALEVLLLYNNHIVVV--------DRNAFEDMAQLQKLYLSQNQISRFPVE-LIKDGNKLPKLM 166 (361)
T ss_dssp --SCCCEECTTTTTTCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCSCCGG-GTC----CTTCC
T ss_pred --CcCCcCCHHHhCCCcCCCEEECCCCcccEE--------CHHHhCCcccCCEEECCCCcCCeeCHH-HhcCcccCCcCC
Confidence 544 22234567899999999999987321 112234678999999988765542211 22 5689999
Q ss_pred EEEeeccccccCCCCcchhhccC--ccEEEeec
Q 046380 264 TLKLLSSVFGKLPSSLSSAILKK--LKLVRMEN 294 (434)
Q Consensus 264 ~L~l~~~~~~~~p~~~~~~~~~~--L~~L~l~~ 294 (434)
.|++++|.+..+|.. ....++. |+.|.+.+
T Consensus 167 ~L~L~~N~l~~l~~~-~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 167 LLDLSSNKLKKLPLT-DLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp EEECCSSCCCCCCHH-HHHHSCHHHHTTEECCS
T ss_pred EEECCCCCCCccCHH-HhhhccHhhcceEEecC
Confidence 999999999888732 1123333 36677776
No 129
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=2.1e-06 Score=73.08 Aligned_cols=73 Identities=10% Similarity=-0.014 Sum_probs=51.9
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhc---CCCc
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQ---CSGI 205 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~---cp~L 205 (434)
...+|........ |++|++++|.+.. .|+ ....++++|++|+|++| ..+ | ++..+... |++|
T Consensus 50 ~~~LP~~~~~~~~-L~~LDLs~~~Itd------~GL-~~L~~~~~L~~L~L~~C-----~~ItD~gL~~L~~~~~~~~~L 116 (176)
T 3e4g_A 50 YNHLPTGPLDKYK-IQAIDATDSCIMS------IGF-DHMEGLQYVEKIRLCKC-----HYIEDGCLERLSQLENLQKSM 116 (176)
T ss_dssp GGGSCCCSTTCCC-EEEEEEESCCCCG------GGG-GGGTTCSCCCEEEEESC-----TTCCHHHHHHHHTCHHHHHHC
T ss_pred cccCCcccCCCce-EeEEeCcCCCccH------HHH-HHhcCCCCCCEEEeCCC-----CccCHHHHHHHHhcccccCCC
Confidence 4456665444556 9999999998722 244 33468999999999996 345 5 67776653 7889
Q ss_pred ceeeeccccCC
Q 046380 206 RDFDEAFVYRP 216 (434)
Q Consensus 206 ~~L~l~~~~~~ 216 (434)
++|++++|...
T Consensus 117 ~~L~Ls~C~~I 127 (176)
T 3e4g_A 117 LEMEIISCGNV 127 (176)
T ss_dssp CEEEEESCTTC
T ss_pred CEEEcCCCCcC
Confidence 99999998764
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.11 E-value=1.4e-06 Score=77.65 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=59.8
Q ss_pred CCCeEEEEEeecCCCCCCCCcccc-ccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYAL-PRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~l-p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~ 188 (434)
..+++|+++... ...+ |...|....+|++|+|+++.+.. +++ .+..+++|++|+|++
T Consensus 32 ~~~~~L~L~~N~--------l~~~~~~~~~~~l~~L~~L~L~~N~i~~--------i~~~~~~~l~~L~~L~Ls~----- 90 (220)
T 2v70_A 32 QYTAELRLNNNE--------FTVLEATGIFKKLPQLRKINFSNNKITD--------IEEGAFEGASGVNEILLTS----- 90 (220)
T ss_dssp TTCSEEECCSSC--------CCEECCCCCGGGCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS-----
T ss_pred CCCCEEEcCCCc--------CCccCchhhhccCCCCCEEECCCCcCCE--------ECHHHhCCCCCCCEEECCC-----
Confidence 567788887655 4444 34445444449999999998722 123 567899999999998
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccCC
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRP 216 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~ 216 (434)
..+ ......+.++++|++|.+++|...
T Consensus 91 -N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 91 -NRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp -SCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred -CccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 555 333445678999999999998773
No 131
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=8.3e-07 Score=85.84 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=93.9
Q ss_pred CCCcceeeeccccCCCCccccccccc-ceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcc
Q 046380 202 CSGIRDFDEAFVYRPDHFCCRFLEFK-VANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLS 280 (434)
Q Consensus 202 cp~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~ 280 (434)
.+.|++|++++|....... . .+ ..+....++|+.|+++++..++.....+...+++|+.|++++|.++..+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~-~---~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC-T---VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH-H---HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHH-H---HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 4678888888877532110 0 00 00111224555555555544444333333344455555555444332111000
Q ss_pred hhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccc---eeecCCCCCCccEEEEcCccCCcHHHHHHH---Hh
Q 046380 281 SAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIAS---FHFGGRGFGNIKTLAVNGFLGLRNKSLEEL---IS 354 (434)
Q Consensus 281 ~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l---~~ 354 (434)
... +.-..++|++|+++++.....+ +.......++|++|+++++ .+++.++..+ +.
T Consensus 147 ~~~-----------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 147 RDL-----------------LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD 208 (372)
T ss_dssp HHH-----------------HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG
T ss_pred HHH-----------------HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh
Confidence 000 0012567778887776643222 2122356789999999999 7888766544 45
Q ss_pred cCCccceEEeeccccccccccc------cccccceeEeccCCcc
Q 046380 355 ACILLENLYLNSCAIPKGHLEI------YSLTLKTLVVHGCDHL 392 (434)
Q Consensus 355 ~~p~Le~L~l~~~~~~~~~~~~------~~~~L~~L~l~~c~~l 392 (434)
..++|+.|+|++|.+....... ..++|+.|++++|..-
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 7789999999999985422211 2468999999999644
No 132
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=3.8e-06 Score=80.69 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=80.7
Q ss_pred HhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCC----cceee-cCCcccEEEecccc---Cc---ccce
Q 046380 255 ALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFD----GPVEI-HSPNLETFVYKAGH---GE---IASF 323 (434)
Q Consensus 255 ~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l----~~~~~-~~p~L~~L~l~~~~---~~---~~~~ 323 (434)
++..+|+|+.|.++++.-..+|. ...++|++|.+..|.-- ..+.. .+|+|+.|++.... .. ...+
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~----~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK----KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS----CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCCceecc----ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 45566777777776652112221 12567888888765321 11122 57899999875321 11 1011
Q ss_pred --eecCCCCCCccEEEEcCccCCcHHHHHHHHh--cCCccceEEeecccccccc---cc---ccccccceeEeccCCc
Q 046380 324 --HFGGRGFGNIKTLAVNGFLGLRNKSLEELIS--ACILLENLYLNSCAIPKGH---LE---IYSLTLKTLVVHGCDH 391 (434)
Q Consensus 324 --~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~--~~p~Le~L~l~~~~~~~~~---~~---~~~~~L~~L~l~~c~~ 391 (434)
......+++|++|.+.++ .+.+.....+.+ .+|+|+.|+|+.|.+.... +. ...++|+.|++++|..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 112245899999999988 677766556654 5789999999998874321 11 1246899999998853
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=1.9e-06 Score=88.12 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=26.8
Q ss_pred cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccC--CCCcchhhccCccEEEeecC
Q 046380 233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKL--PSSLSSAILKKLKLVRMENC 295 (434)
Q Consensus 233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--p~~~~~~~~~~L~~L~l~~c 295 (434)
.+++|+.|+++++..+.-. .+..+++|+.|++++|.+..+ |.. ...+++|+.|+++++
T Consensus 484 ~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 484 ALRCLEVLQASDNALENVD---GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGN 543 (567)
T ss_dssp GCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTS
T ss_pred cCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCC
Confidence 3444444444443333211 344555555555555555544 321 234555555555554
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=6.4e-07 Score=94.41 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=35.9
Q ss_pred hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380 256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT 335 (434)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~ 335 (434)
+..+++|+.|+|++|.+..+|.. .. .+++|++|.++++... .+...+..+++|++
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~lp~~--~~---------------------~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTSLPAE--LG---------------------SCFQLKYFYFFDNMVT--TLPWEFGNLCNLQF 320 (727)
T ss_dssp GGGGTTCCEEECTTSCCSSCCSS--GG---------------------GGTTCSEEECCSSCCC--CCCSSTTSCTTCCC
T ss_pred hhCCCCCCEEeCcCCcCCccChh--hc---------------------CCCCCCEEECCCCCCC--ccChhhhcCCCccE
Confidence 45566666666666666655542 12 3445555555554322 33334566777888
Q ss_pred EEEcCccCCc
Q 046380 336 LAVNGFLGLR 345 (434)
Q Consensus 336 L~l~~~~~~~ 345 (434)
|.|+++ .++
T Consensus 321 L~L~~N-~l~ 329 (727)
T 4b8c_D 321 LGVEGN-PLE 329 (727)
T ss_dssp EECTTS-CCC
T ss_pred EeCCCC-ccC
Confidence 888777 444
No 135
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.02 E-value=2.3e-06 Score=78.85 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHcCCChHHHH-HHhhhhhhhhhcc
Q 046380 5 DRISFLPDDLTHHIMSLLPMKDIA-RTSILSKRWMSHW 41 (434)
Q Consensus 5 D~is~LPdeiL~~I~s~L~~~~~~-r~~~vskrW~~lw 41 (434)
..+..||+|++.+||++||+++++ +++.|||+|+.+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 468899999999999999999999 9999999999763
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=1.3e-05 Score=75.89 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=32.6
Q ss_pred CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec
Q 046380 234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN 294 (434)
Q Consensus 234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~ 294 (434)
..++..+.+.+.. .......+...+++|+.+++.++.+..+|... ...+.+|++|.+..
T Consensus 201 ~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a-F~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 201 PRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFT-FAQKKYLLKIKLPH 259 (329)
T ss_dssp GGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-TTTCTTCCEEECCT
T ss_pred ccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhh-hhCCCCCCEEECCc
Confidence 3445555555432 22333333455788888888877777766421 23344555555544
No 137
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=1.9e-06 Score=78.58 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhh
Q 046380 6 RISFLPDDLTHHIMSLLPMKDIARTSILSKRWMS 39 (434)
Q Consensus 6 ~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~ 39 (434)
.|+.||+||+.+||+||+++|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999985
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.89 E-value=3.1e-06 Score=73.65 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=46.3
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccccc--ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL--SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD 207 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~ 207 (434)
...+|..++. + |++|+++++.+.. +++ .+..+++|++|+|++ ..+ ......+.++++|++
T Consensus 20 l~~ip~~~~~--~-l~~L~l~~n~i~~--------~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 20 LKEIPRDIPL--H-TTELLLNDNELGR--------ISSDGLFGRLPHLVKLELKR------NQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp CSSCCSCCCT--T-CSEEECCSCCCCS--------BCCSCSGGGCTTCCEEECCS------SCCCCBCTTTTTTCTTCCE
T ss_pred cCcCccCCCC--C-CCEEECCCCcCCc--------cCCccccccCCCCCEEECCC------CCCCCcCHhHcCCcccCCE
Confidence 4556665544 4 8889998887722 123 256888899999988 555 232445667888888
Q ss_pred eeeccccC
Q 046380 208 FDEAFVYR 215 (434)
Q Consensus 208 L~l~~~~~ 215 (434)
|+++++..
T Consensus 83 L~Ls~N~l 90 (192)
T 1w8a_A 83 LQLGENKI 90 (192)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 88888866
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=4.4e-05 Score=72.28 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=20.9
Q ss_pred CCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380 330 FGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI 369 (434)
Q Consensus 330 ~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~ 369 (434)
..+++.+.+.+. +.......+...|++|+.++|.++.+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCc
Confidence 345555555554 44444555555566666666666543
No 140
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.81 E-value=4.4e-06 Score=82.63 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=36.6
Q ss_pred CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhccc
Q 046380 3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWL 42 (434)
Q Consensus 3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~ 42 (434)
..|.|+.||+|++.+||+||+++++++++.|||+|+++..
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999999999987543
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.80 E-value=6.2e-06 Score=71.85 Aligned_cols=113 Identities=9% Similarity=0.043 Sum_probs=66.5
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFD 209 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~ 209 (434)
...+|..++ .+ |++|+|+++.+.. +|..+..+++|++|+|++ ..+ ......+.++++|++|.
T Consensus 22 l~~ip~~~~--~~-l~~L~L~~n~i~~--------ip~~~~~l~~L~~L~Ls~------N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 22 LKVLPKGIP--RD-VTELYLDGNQFTL--------VPKELSNYKHLTLIDLSN------NRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp CSSCCSCCC--TT-CCEEECCSSCCCS--------CCGGGGGCTTCCEEECCS------SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCCCCC--CC-CCEEECCCCcCch--------hHHHhhcccCCCEEECCC------CcCCEeCHhHccCCCCCCEEE
Confidence 344555443 23 7777777776632 234556677777777776 444 22223355667777777
Q ss_pred eccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccE
Q 046380 210 EAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKL 289 (434)
Q Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~ 289 (434)
+++|..... . ...+..+++|+.|++++|.+..+|... ...+++|++
T Consensus 85 Ls~N~l~~i--------------------------------~-~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~ 130 (193)
T 2wfh_A 85 LSYNRLRCI--------------------------------P-PRTFDGLKSLRLLSLHGNDISVVPEGA-FNDLSALSH 130 (193)
T ss_dssp CCSSCCCBC--------------------------------C-TTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCE
T ss_pred CCCCccCEe--------------------------------C-HHHhCCCCCCCEEECCCCCCCeeChhh-hhcCccccE
Confidence 777655211 0 013456777888888887777766421 234667777
Q ss_pred EEeec
Q 046380 290 VRMEN 294 (434)
Q Consensus 290 L~l~~ 294 (434)
|++++
T Consensus 131 L~L~~ 135 (193)
T 2wfh_A 131 LAIGA 135 (193)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 77776
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.79 E-value=1.5e-05 Score=68.17 Aligned_cols=57 Identities=9% Similarity=-0.048 Sum_probs=28.5
Q ss_pred eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccC
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
|++|+++++.+.. +++ ....+++|++|++++ ..+ ......+..+++|++|++++|..
T Consensus 30 l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 30 ATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSQ------NQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp CSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEeCCCcccE--------eCHHHhcCcccccEEECCC------CcceEeChhHccCCCccCEEECCCCCc
Confidence 6666666665521 112 234566666666665 333 11122234556666666665544
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.77 E-value=4.7e-06 Score=87.80 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=29.4
Q ss_pred cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC
Q 046380 233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC 295 (434)
Q Consensus 233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c 295 (434)
.+++|+.|+++++.+.. +...+..+++|+.|+|++|.+..+|.. ...+++|+.|+++++
T Consensus 268 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~lp~~--~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 268 NLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNMVTTLPWE--FGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCSSCCCCCCSS--TTSCTTCCCEECTTS
T ss_pred CCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCCCCCCccChh--hhcCCCccEEeCCCC
Confidence 34455555554443331 111234556666666666665555543 234555666665554
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=68.70 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=73.9
Q ss_pred CcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH
Q 046380 173 NPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF 252 (434)
Q Consensus 173 ~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~ 252 (434)
.++|++|+|++ ..+..+...+.++++|+.|+++++......
T Consensus 30 ~~~l~~L~L~~------n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~--------------------------------- 70 (193)
T 2wfh_A 30 PRDVTELYLDG------NQFTLVPKELSNYKHLTLIDLSNNRISTLS--------------------------------- 70 (193)
T ss_dssp CTTCCEEECCS------SCCCSCCGGGGGCTTCCEEECCSSCCCCCC---------------------------------
T ss_pred CCCCCEEECCC------CcCchhHHHhhcccCCCEEECCCCcCCEeC---------------------------------
Confidence 36899999988 544222345677888888888888763210
Q ss_pred HHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEecccc
Q 046380 253 ESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGH 317 (434)
Q Consensus 253 ~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~ 317 (434)
...+..+++|++|++++|.+..+|.. ....+++|++|+++++.--... .+ .+++|+.|++.++.
T Consensus 71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 01357789999999999999887642 1345789999999986432221 23 58999999998865
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=1.3e-05 Score=68.61 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=70.6
Q ss_pred cCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCch
Q 046380 172 FNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR 250 (434)
Q Consensus 172 ~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~ 250 (434)
..++|++|++++ ..+ ......+..+++|++|+++++...... ......+++|+.|++++......
T Consensus 26 ~~~~l~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 26 IPSSATRLELES------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP--------DGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp CCTTCSEEECCS------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCcEEEeCC------CcccEeCHHHhcCcccccEEECCCCcceEeC--------hhHccCCCccCEEECCCCCcccc
Confidence 346888888887 444 222334567888888888888763221 11123577888888877655432
Q ss_pred hHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380 251 TFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR 296 (434)
Q Consensus 251 ~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~ 296 (434)
. ...+..+++|+.|++++|.++.+|... ...+++|++|++++++
T Consensus 92 ~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 92 P-NGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp C-TTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred C-HHHhhCCcccCEEECcCCcceEeCHHH-hcCCcccCEEEecCCC
Confidence 1 113467788888888888888776532 2346788888888754
No 146
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.61 E-value=2.9e-05 Score=76.41 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=35.7
Q ss_pred CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc
Q 046380 3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSH 40 (434)
Q Consensus 3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l 40 (434)
..|.|+.||+|++.+||+||+++++++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 46999999999999999999999999999999999863
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.60 E-value=2e-05 Score=68.41 Aligned_cols=123 Identities=9% Similarity=0.037 Sum_probs=66.1
Q ss_pred eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCR 222 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~ 222 (434)
-++++++++.+.. +|... .++|++|++++ ..+ . .....+..+++|++|+++++......
T Consensus 10 ~~~l~~s~~~l~~--------ip~~~--~~~l~~L~l~~------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 70 (192)
T 1w8a_A 10 GTTVDCTGRGLKE--------IPRDI--PLHTTELLLND------NELGRISSDGLFGRLPHLVKLELKRNQLTGIE--- 70 (192)
T ss_dssp TTEEECTTSCCSS--------CCSCC--CTTCSEEECCS------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC---
T ss_pred CCEEEcCCCCcCc--------CccCC--CCCCCEEECCC------CcCCccCCccccccCCCCCEEECCCCCCCCcC---
Confidence 3567777776622 12222 34899999988 555 2 11224677889999999888763210
Q ss_pred cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--
Q 046380 223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP-- 300 (434)
Q Consensus 223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~-- 300 (434)
.. .+..+++|+.|++++|.+..++... ...+++|++|+++++.--..
T Consensus 71 -----~~-------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 71 -----PN-------------------------AFEGASHIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp -----TT-------------------------TTTTCTTCCEEECCSCCCCEECSSS-STTCTTCCEEECCSSCCCEECT
T ss_pred -----Hh-------------------------HcCCcccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCeeCH
Confidence 11 2344555555555555554443211 12345555555555422111
Q ss_pred eee-cCCcccEEEecccc
Q 046380 301 VEI-HSPNLETFVYKAGH 317 (434)
Q Consensus 301 ~~~-~~p~L~~L~l~~~~ 317 (434)
-.+ ..++|++|+++++.
T Consensus 120 ~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 120 GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TSSTTCTTCCEEECTTCC
T ss_pred HHhhcCCCCCEEEeCCCC
Confidence 122 46677777777654
No 148
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.57 E-value=1.6e-05 Score=78.01 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCCCCCCCCHH----HHHHHHcCCChHHHHHHhhhhhhhhh
Q 046380 3 AIDRISFLPDD----LTHHIMSLLPMKDIARTSILSKRWMS 39 (434)
Q Consensus 3 ~~D~is~LPde----iL~~I~s~L~~~~~~r~~~vskrW~~ 39 (434)
..|.|+.||+| |+.+||+||++++++++++|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 46999999999 99999999999999999999999985
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=4e-05 Score=66.20 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=30.5
Q ss_pred CCCCCCccEEEE--cCccCCcHHHH---HHHHhcCCccceEEeecccc
Q 046380 327 GRGFGNIKTLAV--NGFLGLRNKSL---EELISACILLENLYLNSCAI 369 (434)
Q Consensus 327 ~~~~~~Lk~L~l--~~~~~~~~~~l---~~l~~~~p~Le~L~l~~~~~ 369 (434)
....++|++|++ .++ .+++++. ...++..++|++|++++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 345567888888 556 6777754 44455778899999988876
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.51 E-value=0.00015 Score=70.57 Aligned_cols=224 Identities=13% Similarity=0.137 Sum_probs=117.6
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE 210 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l 210 (434)
...++...|...+ |+.+.+...--.. ...++.-.+|+++.+... +.. --...+.+|++|+.+.+
T Consensus 124 i~~I~~~aF~~~~-L~~i~l~~~i~~I---------~~~aF~~~~L~~i~lp~~-----l~~-I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 124 VKSIPKDAFRNSQ-IAKVVLNEGLKSI---------GDMAFFNSTVQEIVFPST-----LEQ-LKEDIFYYCYNLKKADL 187 (401)
T ss_dssp CCEECTTTTTTCC-CSEEECCTTCCEE---------CTTTTTTCCCCEEECCTT-----CCE-ECSSTTTTCTTCCEEEC
T ss_pred cCEehHhhcccCC-ccEEEeCCCccEE---------CHHhcCCCCceEEEeCCC-----ccE-ehHHHhhCcccCCeeec
Confidence 3455566666555 8888886541111 122222236888888651 221 01234677999999999
Q ss_pred ccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEE
Q 046380 211 AFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLV 290 (434)
Q Consensus 211 ~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L 290 (434)
..+... .+........+|+.+.+......-. ...+.++++|+.+++..+ +..++...+.. .+|+.+
T Consensus 188 ~~n~l~---------~I~~~aF~~~~L~~l~lp~~l~~I~--~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i 253 (401)
T 4fdw_A 188 SKTKIT---------KLPASTFVYAGIEEVLLPVTLKEIG--SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTV 253 (401)
T ss_dssp TTSCCS---------EECTTTTTTCCCSEEECCTTCCEEC--TTTTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEE
T ss_pred CCCcce---------EechhhEeecccCEEEeCCchheeh--hhHhhCCCCCCEEecCCC-ccCcccccccc--CCccEE
Confidence 876542 1222223356777776643211100 114577888888888753 44444322222 478888
Q ss_pred EeecC-CCCcceee-cCCcccEEEeccccCccc---cee-ecCCCCCCccEEEEcCcc-CCcHHHHHHHHhcCCccceEE
Q 046380 291 RMENC-RFDGPVEI-HSPNLETFVYKAGHGEIA---SFH-FGGRGFGNIKTLAVNGFL-GLRNKSLEELISACILLENLY 363 (434)
Q Consensus 291 ~l~~c-~~l~~~~~-~~p~L~~L~l~~~~~~~~---~~~-~~~~~~~~Lk~L~l~~~~-~~~~~~l~~l~~~~p~Le~L~ 363 (434)
.+... ..+..-.+ .|++|+++.+.++..... .+. ..+..|++|+++.+.+.- .+.... +.+|++|+.+.
T Consensus 254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~a----F~~c~~L~~l~ 329 (401)
T 4fdw_A 254 KLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGL----LGGNRKVTQLT 329 (401)
T ss_dssp EEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTT----TTTCCSCCEEE
T ss_pred EeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhh----hcCCCCccEEE
Confidence 77542 22222233 588888888766542200 111 134567788888776421 111222 25678888888
Q ss_pred eeccccc-cccccccccccceeEeccC
Q 046380 364 LNSCAIP-KGHLEIYSLTLKTLVVHGC 389 (434)
Q Consensus 364 l~~~~~~-~~~~~~~~~~L~~L~l~~c 389 (434)
|..+-.. .......+ +|+.+.+.+.
T Consensus 330 lp~~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 330 IPANVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ECTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred ECccccEEcHHhCCCC-CCCEEEEcCC
Confidence 7544211 11111223 6666666654
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=2.9e-05 Score=67.10 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=56.0
Q ss_pred eeEEEEeee-eecccccccccccccccccCcccceEEEeeecccceEee-C----hHHHHHhcCCCcceeeeccccCCCC
Q 046380 145 LVSLTIRHC-KIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D----APRLNYFQCSGIRDFDEAFVYRPDH 218 (434)
Q Consensus 145 L~~L~L~~~-~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~----~l~~~~~~cp~L~~L~l~~~~~~~~ 218 (434)
|++|+|++| .++. .++..+.......++|++|+|++ +.+ + .+...+..++.|++|++++|...+.
T Consensus 38 L~~L~L~~n~~i~~---~g~~~l~~~L~~~~~L~~L~Ls~------n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 38 LEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVG------TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp CCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTT------SCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred CCEEEecCCCCCCH---HHHHHHHHHHHhCCCcCEEECcC------CCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 666666665 5421 01111112233456677777766 444 2 3344455566777777776655321
Q ss_pred cccccccccceeeccCCceeEEEE--EeEEeCchh---HHHHhccCCCCcEEEeecccc
Q 046380 219 FCCRFLEFKVANENSMSSLETLVF--SFMVLNDRT---FESALSKFSNLETLKLLSSVF 272 (434)
Q Consensus 219 ~~~~~l~~~~~~~~~~p~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 272 (434)
.. ..+.......++|++|++ +++.+.+.. +...+...++|++|++++|.+
T Consensus 109 g~----~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GI----LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HH----HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HH----HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 10 001111223445666666 444444433 233445566777777776654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.23 E-value=0.00033 Score=59.66 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=8.6
Q ss_pred ccCCCCcEEEeeccccc
Q 046380 257 SKFSNLETLKLLSSVFG 273 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~ 273 (434)
..+++|+.|++++|.+.
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 34455555555555443
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.22 E-value=0.00099 Score=64.81 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=92.2
Q ss_pred ccccccccccCCCceeEEEEeeee--ecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCK--IGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~--~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L 208 (434)
...++...|...+ |+.+.+...- ++. ..+.+|++|+++++.. ..+..+..-.-.|.+|+++
T Consensus 146 i~~I~~~aF~~~~-L~~i~lp~~l~~I~~----------~aF~~c~~L~~l~l~~------n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 146 LKSIGDMAFFNST-VQEIVFPSTLEQLKE----------DIFYYCYNLKKADLSK------TKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCEECTTTTTTCC-CCEEECCTTCCEECS----------STTTTCTTCCEEECTT------SCCSEECTTTTTTCCCSEE
T ss_pred ccEECHHhcCCCC-ceEEEeCCCccEehH----------HHhhCcccCCeeecCC------CcceEechhhEeecccCEE
Confidence 3455555565555 7777776521 121 2345677777777764 2220010001115667777
Q ss_pred eeccccCCCCcccccccccceeeccCCceeEEEEEeEE--eCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC
Q 046380 209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV--LNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK 286 (434)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~ 286 (434)
.+...-. . ........+++|+.+.+.+.. +... .+.+ .+|+.+.+. +.+..++.. ....+++
T Consensus 209 ~lp~~l~-~--------I~~~aF~~~~~L~~l~l~~~l~~I~~~----aF~~-~~L~~i~lp-~~i~~I~~~-aF~~c~~ 272 (401)
T 4fdw_A 209 LLPVTLK-E--------IGSQAFLKTSQLKTIEIPENVSTIGQE----AFRE-SGITTVKLP-NGVTNIASR-AFYYCPE 272 (401)
T ss_dssp ECCTTCC-E--------ECTTTTTTCTTCCCEECCTTCCEECTT----TTTT-CCCSEEEEE-TTCCEECTT-TTTTCTT
T ss_pred EeCCchh-e--------ehhhHhhCCCCCCEEecCCCccCcccc----cccc-CCccEEEeC-CCccEEChh-HhhCCCC
Confidence 6653311 0 001112234555555553211 1111 1222 466666663 233333321 1223556
Q ss_pred ccEEEeecCCC-------Ccceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc-CCcHHHHHHHHhcCC
Q 046380 287 LKLVRMENCRF-------DGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL-GLRNKSLEELISACI 357 (434)
Q Consensus 287 L~~L~l~~c~~-------l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~-~~~~~~l~~l~~~~p 357 (434)
|+.+.+.+... +..-.+ .|++|+.+.+...-..++. ..+..|.+|+++.|...- .+.... +.+|
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~--~aF~~c~~L~~l~lp~~l~~I~~~a----F~~~- 345 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQ--GLLGGNRKVTQLTIPANVTQINFSA----FNNT- 345 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECT--TTTTTCCSCCEEEECTTCCEECTTS----SSSS-
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhh--hhhcCCCCccEEEECccccEEcHHh----CCCC-
Confidence 66666654311 111222 4777777776642111111 134567778888775431 111111 2466
Q ss_pred ccceEEeecccc
Q 046380 358 LLENLYLNSCAI 369 (434)
Q Consensus 358 ~Le~L~l~~~~~ 369 (434)
+|+.+++.++..
T Consensus 346 ~L~~l~l~~n~~ 357 (401)
T 4fdw_A 346 GIKEVKVEGTTP 357 (401)
T ss_dssp CCCEEEECCSSC
T ss_pred CCCEEEEcCCCC
Confidence 788888877654
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.15 E-value=0.0003 Score=59.64 Aligned_cols=68 Identities=12% Similarity=-0.042 Sum_probs=40.3
Q ss_pred ccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..++ .. |++|+|+++.+.. ++ ..+..+++|++|+|++ ..+ .-....+..+++|++|
T Consensus 21 l~~ip~~~~--~~-l~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~Ls~------N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 21 LASVPTGIP--TT-TQVLYLYDNQITK--------LEPGVFDRLTQLTRLDLDN------NQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp CSSCCSCCC--TT-CSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred cCccCccCC--CC-CcEEEcCCCcCCc--------cChhhhcCcccCCEEECCC------CCcCccChhhccCCCCCCEE
Confidence 444555543 33 7777777776621 11 2355777777887777 444 2222334567777777
Q ss_pred eeccccC
Q 046380 209 DEAFVYR 215 (434)
Q Consensus 209 ~l~~~~~ 215 (434)
+++++..
T Consensus 84 ~L~~N~l 90 (170)
T 3g39_A 84 SLNDNQL 90 (170)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 7777765
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.82 E-value=0.00066 Score=57.73 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=60.1
Q ss_pred ccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380 131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF 208 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L 208 (434)
...+|..+. .+ |++|+|+++.+.. + +..+..+++|++|+|++ ..+ .-....+..+++|+.|
T Consensus 24 l~~iP~~~~--~~-L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~------N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 24 LASVPAGIP--TD-KQRLWLNNNQITK--------LEPGVFDHLVNLQQLYFNS------NKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp CSSCCSCCC--TT-CSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred CCccCCCcC--CC-CcEEEeCCCCccc--------cCHHHhcCCcCCCEEECCC------CCCCccChhHhCCcchhhEE
Confidence 456666554 34 8888888887722 1 23456888899999988 544 2223345678889999
Q ss_pred eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC
Q 046380 209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN 248 (434)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~ 248 (434)
++++|...... ......+++|+.|++++....
T Consensus 87 ~L~~N~l~~l~--------~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIP--------RGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCC--------TTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeC--------HHHhccccCCCEEEeCCCCcc
Confidence 98888763221 111335788888888776543
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.80 E-value=0.00069 Score=57.35 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=60.7
Q ss_pred CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380 111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG 189 (434)
Q Consensus 111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~ 189 (434)
+++++|+++... ...++...|....+|++|+|+++.+.. +++. +..+++|++|+|++
T Consensus 30 ~~l~~L~L~~N~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~f~~l~~L~~L~L~~------ 87 (170)
T 3g39_A 30 TTTQVLYLYDNQ--------ITKLEPGVFDRLTQLTRLDLDNNQLTV--------LPAGVFDKLTQLTQLSLND------ 87 (170)
T ss_dssp TTCSEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred CCCcEEEcCCCc--------CCccChhhhcCcccCCEEECCCCCcCc--------cChhhccCCCCCCEEECCC------
Confidence 688889887665 556655555544449999999998832 2343 46899999999998
Q ss_pred Eee-ChHHHHHhcCCCcceeeeccccC
Q 046380 190 FEM-DAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
..+ .-....+..+++|+.|.++++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 555 22234567789999999999876
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.87 E-value=0.012 Score=53.59 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=50.6
Q ss_pred ccCCCCcEEEeeccccccCCC-CcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380 257 SKFSNLETLKLLSSVFGKLPS-SLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT 335 (434)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~ 335 (434)
..+++|+.|+|++|.+..++. .-... .+|+|+.|+++++.............+ +|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~---------------------~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~ 224 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQ---------------------KAPNLKILNLSGNELKSERELDKIKGL-KLEE 224 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHH---------------------HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSE
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHh---------------------hCCCCCEEECCCCccCCchhhhhcccC-Ccce
Confidence 678999999999988776542 00112 345555555555443211001112223 7888
Q ss_pred EEEcCccCCcH------HHHHHHHhcCCccceEE
Q 046380 336 LAVNGFLGLRN------KSLEELISACILLENLY 363 (434)
Q Consensus 336 L~l~~~~~~~~------~~l~~l~~~~p~Le~L~ 363 (434)
|.+.++ .++. .....++..+|+|+.|+
T Consensus 225 L~L~~N-pl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 225 LWLDGN-SLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EECTTS-TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EEccCC-cCccccCcchhHHHHHHHHCcccCeEC
Confidence 888887 4443 34567788999999987
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.79 E-value=0.0045 Score=58.58 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=40.2
Q ss_pred ccccccccccCCCceeEEEEee-eeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380 131 HYALPRVIFSSGSFLVSLTIRH-CKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD 207 (434)
Q Consensus 131 ~~~lp~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~ 207 (434)
...+|. +....+ |++|+|++ +.+.. ++ ..+.++++|++|+|++ +.+ ......+.++++|+.
T Consensus 21 l~~ip~-l~~~~~-L~~L~l~~~n~l~~--------~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 21 LDSLHH-LPGAEN-LTELYIENQQHLQH--------LELRDLRGLGELRNLTIVK------SGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CTTTTT-SCSCSC-CSEEECCSCSSCCE--------ECGGGSCSCCCCSEEECCS------SCCCEECTTGGGSCSCCCE
T ss_pred CCccCC-CCCCCC-eeEEEccCCCCCCC--------cChhHhccccCCCEEECCC------CccceeCHHHhcCCcCCCE
Confidence 445666 444444 77777775 65521 12 2355777777777777 433 122334566777777
Q ss_pred eeeccccC
Q 046380 208 FDEAFVYR 215 (434)
Q Consensus 208 L~l~~~~~ 215 (434)
|+|++|..
T Consensus 85 L~l~~N~l 92 (347)
T 2ifg_A 85 LNLSFNAL 92 (347)
T ss_dssp EECCSSCC
T ss_pred EeCCCCcc
Confidence 77777655
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.79 E-value=0.0038 Score=59.10 Aligned_cols=82 Identities=15% Similarity=0.029 Sum_probs=42.4
Q ss_pred CCCeEEEEEe-ecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380 111 GKLQKLDLHV-RDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ 188 (434)
Q Consensus 111 ~~l~~L~l~~-~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~ 188 (434)
.++++|+|+. .. ...+|...|....+|+.|+|++|.+.. +++ .+..+++|++|+|++
T Consensus 31 ~~L~~L~l~~~n~--------l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~l~~----- 89 (347)
T 2ifg_A 31 ENLTELYIENQQH--------LQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFHFTPRLSRLNLSF----- 89 (347)
T ss_dssp SCCSEEECCSCSS--------CCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGGSCSCCCEEECCS-----
T ss_pred CCeeEEEccCCCC--------CCCcChhHhccccCCCEEECCCCccce--------eCHHHhcCCcCCCEEeCCC-----
Confidence 4566776653 33 445555444433337777777766521 122 335667777777776
Q ss_pred eEee-ChHHHHHhcCCCcceeeeccccC
Q 046380 189 GFEM-DAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
+.+ .-....+...+ |+.|.+.++..
T Consensus 90 -N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 -NALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp -SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred -CccceeCHHHcccCC-ceEEEeeCCCc
Confidence 433 11112222223 66666666654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.02 E-value=0.0084 Score=54.55 Aligned_cols=86 Identities=13% Similarity=-0.053 Sum_probs=44.0
Q ss_pred HhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc-CCC
Q 046380 199 YFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK-LPS 277 (434)
Q Consensus 199 ~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~ 277 (434)
..++|+|++|+|++|...... .+......+|+|+.|++++....+..-...+..+ +|+.|++.+|.+.. +|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~------~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCG------GGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred HhhCCCCCEEECCCCCCCCCc------cchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence 355666666666666653321 1112223566666666665554433111122233 77777777776653 331
Q ss_pred -----CcchhhccCccEEE
Q 046380 278 -----SLSSAILKKLKLVR 291 (434)
Q Consensus 278 -----~~~~~~~~~L~~L~ 291 (434)
......|++|+.|+
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 01134566777665
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.93 E-value=0.02 Score=55.18 Aligned_cols=65 Identities=6% Similarity=0.024 Sum_probs=38.9
Q ss_pred cccccccc-CCCceeEEEEeeeee--cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceee
Q 046380 133 ALPRVIFS-SGSFLVSLTIRHCKI--GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFD 209 (434)
Q Consensus 133 ~lp~~~~~-~~~~L~~L~L~~~~~--~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~ 209 (434)
.+....|. |.+ |+.+.+..... .. ..+.++++|+.+.+... +.. --...+.+|+.|+.+.
T Consensus 152 ~i~~~aF~~c~~-L~~i~l~~~~~~I~~----------~~F~~c~~L~~i~l~~~-----~~~-I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 152 VIGDEAFATCES-LEYVSLPDSMETLHN----------GLFSGCGKLKSIKLPRN-----LKI-IRDYCFAECILLENME 214 (394)
T ss_dssp EECTTTTTTCTT-CCEEECCTTCCEECT----------TTTTTCTTCCBCCCCTT-----CCE-ECTTTTTTCTTCCBCC
T ss_pred ccchhhhcccCC-CcEEecCCccceecc----------ccccCCCCceEEEcCCC-----ceE-eCchhhccccccceee
Confidence 34444454 555 99998865422 22 24557889999888652 221 1123456788888887
Q ss_pred ecccc
Q 046380 210 EAFVY 214 (434)
Q Consensus 210 l~~~~ 214 (434)
+....
T Consensus 215 ~~~~~ 219 (394)
T 4fs7_A 215 FPNSL 219 (394)
T ss_dssp CCTTC
T ss_pred cCCCc
Confidence 76543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.45 E-value=0.043 Score=52.85 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=17.8
Q ss_pred CCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeee
Q 046380 112 KLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHC 153 (434)
Q Consensus 112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~ 153 (434)
.++++.+- .....+....|. |.+ |+.+.+..+
T Consensus 65 ~L~sI~iP---------~svt~Ig~~AF~~C~~-L~~i~~~~n 97 (394)
T 4gt6_A 65 VLTSVQIP---------DTVTEIGSNAFYNCTS-LKRVTIQDN 97 (394)
T ss_dssp CCCEEEEC---------TTCCEECTTTTTTCTT-CCEEEEGGG
T ss_pred cCEEEEEC---------CCeeEEhHHHhhCCcc-CceEeecCC
Confidence 36666662 123455555554 455 777777543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.34 E-value=0.047 Score=52.56 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=26.8
Q ss_pred ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccc
Q 046380 169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFV 213 (434)
Q Consensus 169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~ 213 (434)
.+.++++|+++.+... +.. --...+.+|++|+.+.+...
T Consensus 157 aF~~c~~L~~i~l~~~-----~~~-I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-----MET-LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTT-----CCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc-----cce-eccccccCCCCceEEEcCCC
Confidence 4568899999999752 211 11234678999999998654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.46 E-value=0.71 Score=44.14 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=47.0
Q ss_pred hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC-CCCcceee-cCCcccEEEeccccCcccceeecCCCCCCc
Q 046380 256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC-RFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNI 333 (434)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c-~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L 333 (434)
+..+.+|+.+.+..... .++.. ....+.+|+.+.+... ..+..-.+ .|.+|+++.+...-..++. ..+..|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~-aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~--~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTG-AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD--DAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTT-TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT--TTTTTCTTC
T ss_pred eeecccccEEecccccc-eecCc-ccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH--hHhhCCCCC
Confidence 45566666666543311 11110 0122445665555421 11111122 3666666666432111111 124556667
Q ss_pred cEEEEcCc-cCCcHHHHHHHHhcCCccceEEeeccc
Q 046380 334 KTLAVNGF-LGLRNKSLEELISACILLENLYLNSCA 368 (434)
Q Consensus 334 k~L~l~~~-~~~~~~~l~~l~~~~p~Le~L~l~~~~ 368 (434)
+++.|... ..+...++ .+|++|+.+++.++.
T Consensus 337 ~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAF----SNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTTCCBCCGGGG----TTCTTCCEEEESSCH
T ss_pred CEEEECcccCEEhHhHh----hCCCCCCEEEECCce
Confidence 77766432 12223322 466677777666544
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.40 E-value=0.83 Score=39.14 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCccEEEEcCccCCcHHHHHHHHh---cCCccceEEeec
Q 046380 331 GNIKTLAVNGFLGLRNKSLEELIS---ACILLENLYLNS 366 (434)
Q Consensus 331 ~~Lk~L~l~~~~~~~~~~l~~l~~---~~p~Le~L~l~~ 366 (434)
++|++|+|+++ .+++.+...+.+ .-..|+.|+|++
T Consensus 98 ~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34555555555 445544443333 223455555543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=83.22 E-value=0.47 Score=40.73 Aligned_cols=21 Identities=5% Similarity=-0.146 Sum_probs=10.0
Q ss_pred HHHHHhcCCCcceeeeccccC
Q 046380 195 PRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 195 l~~~~~~cp~L~~L~l~~~~~ 215 (434)
+...+...+.|++|+|..|..
T Consensus 90 lA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 90 LIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHhcCCccCeEecCCCcC
Confidence 334444445555555554444
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=64.58 E-value=3.2 Score=39.07 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=64.0
Q ss_pred HHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCC
Q 046380 198 NYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPS 277 (434)
Q Consensus 198 ~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~ 277 (434)
....|.+|+.+.+...-.. ........+.+|+.+.+......-+ ...+..+.+|+.+.+... +..++.
T Consensus 212 ~f~~~~~l~~i~~~~~~~~---------i~~~~f~~~~~L~~i~lp~~v~~I~--~~aF~~~~~l~~i~l~~~-i~~i~~ 279 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVTT---------LGDGAFYGMKALDEIAIPKNVTSIG--SFLLQNCTALKTLNFYAK-VKTVPY 279 (379)
T ss_dssp TTTTCSSCSEEECCTTCCE---------ECTTTTTTCSSCCEEEECTTCCEEC--TTTTTTCTTCCEEEECCC-CSEECT
T ss_pred ccccccccceeeeccceeE---------EccccccCCccceEEEcCCCccEeC--ccccceeehhcccccccc-ceeccc
Confidence 3456788888777543220 0011122455666666533211000 013456777777777533 333332
Q ss_pred CcchhhccCccEEEeecC--CCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcC
Q 046380 278 SLSSAILKKLKLVRMENC--RFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNG 340 (434)
Q Consensus 278 ~~~~~~~~~L~~L~l~~c--~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~ 340 (434)
. ....+.+|+.+.+... ..+..-.+ .|.+|+++.+..+-..++. ..+..|.+|+++.+..
T Consensus 280 ~-aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~--~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 280 L-LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQV--YAFKNCKALSTISYPK 342 (379)
T ss_dssp T-TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT--TTTTTCTTCCCCCCCT
T ss_pred c-ccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHH--HHhhCCCCCCEEEECC
Confidence 1 1234567777777542 12222233 5788888887543211111 1356778888887743
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=59.32 E-value=4.2 Score=31.98 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=17.8
Q ss_pred eeEEEEeeeeeccccccccccccc-ccccCcccceEEEee
Q 046380 145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRG 183 (434)
Q Consensus 145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~ 183 (434)
|++|+|+++.+.. +++ .+..+++|++|+|.+
T Consensus 33 l~~L~Ls~N~l~~--------l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 33 TTELVLTGNNLTA--------LPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CSEEECTTSCCSS--------CCTTTGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCc--------cChhhhhhccccCEEEecC
Confidence 6677777766622 122 233566677777766
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=54.18 E-value=7.8 Score=30.40 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=28.8
Q ss_pred ccCc-ccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccC
Q 046380 171 FFNP-SVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYR 215 (434)
Q Consensus 171 ~~~~-~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~ 215 (434)
..+| +|++|+|++ +.+ .--...+...++|+.|.|.+|.+
T Consensus 27 ~~lp~~l~~L~Ls~------N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 27 TAFPVDTTELVLTG------NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp SCCCTTCSEEECTT------SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCCEEECCC------CcCCccChhhhhhccccCEEEecCCCe
Confidence 3444 699999998 555 22234567789999999999876
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=39.23 E-value=18 Score=33.69 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=60.9
Q ss_pred ccccccc-cCCCceeEEEEeeee--ecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceee
Q 046380 133 ALPRVIF-SSGSFLVSLTIRHCK--IGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFD 209 (434)
Q Consensus 133 ~lp~~~~-~~~~~L~~L~L~~~~--~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~ 209 (434)
.++...| .|.. |+.+.+...- ++. ..+.++.+|+.+.+... +.. --...+.+|++|+.+.
T Consensus 230 ~i~~~~f~~~~~-L~~i~lp~~v~~I~~----------~aF~~~~~l~~i~l~~~-----i~~-i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 230 TLGDGAFYGMKA-LDEIAIPKNVTSIGS----------FLLQNCTALKTLNFYAK-----VKT-VPYLLCSGCSNLTKVV 292 (379)
T ss_dssp EECTTTTTTCSS-CCEEEECTTCCEECT----------TTTTTCTTCCEEEECCC-----CSE-ECTTTTTTCTTCCEEE
T ss_pred EEccccccCCcc-ceEEEcCCCccEeCc----------cccceeehhcccccccc-----cee-cccccccccccccccc
Confidence 3444444 4555 8888886541 222 34557888888888641 211 1123467799999998
Q ss_pred eccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380 210 EAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL 268 (434)
Q Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (434)
+.++..... -......+.+|+++.+......-+ ...+.+|++|+.+++.
T Consensus 293 l~~~~i~~I--------~~~aF~~c~~L~~i~lp~~l~~I~--~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 293 MDNSAIETL--------EPRVFMDCVKLSSVTLPTALKTIQ--VYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTTCCEE--------CTTTTTTCTTCCEEECCTTCCEEC--TTTTTTCTTCCCCCCC
T ss_pred cccccccee--------hhhhhcCCCCCCEEEcCccccEEH--HHHhhCCCCCCEEEEC
Confidence 876543110 011223467777777643211101 1146788899988775
Done!