BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046382
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 163/576 (28%), Positives = 246/576 (42%), Gaps = 123/576 (21%)
Query: 144 LATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQL 203
L L +S N G + V + L L++S N F+ IP D L+ LDIS N+L
Sbjct: 180 LKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 204 TGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLS-K 262
+G+ ++T C LK+L +S+N G I L +L L L NKF GEIP+ LS
Sbjct: 236 SGDFSRAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSN 321
C L GL LS NH G +P + G+ S LE + + +NN G +P++ ++ LK+LDLS
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 322 NSIFGTLPS---------------------------CFSPAH-IEQVHLSKNKIEGRLES 353
N G LP C +P + +++++L N G++
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413
+ + LV+L LS+N L G+IP+ + L +L L L N ++GEIP +L +K + +
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 414 LSHNNLSGHIPSCLVNTA----LSGGHHEAVAPTSIWCGR----ASVYISACLPSRSAPP 465
L N+L+G IPS L N +S ++ W GR A + +S S + P
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 466 -MGKEETVQFTTKNMSYYYQGRILTSM----------------------SGIDLSCN--- 499
+G ++ + N + + G I +M G+ C+
Sbjct: 533 ELGDCRSLIWLDLNTNLF-NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 500 ---KLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP-- 554
+ G Q+ LS + N++ G TF N + LD+SYN+L G IP
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 555 ----PQLIVLN------------------------------------------TLEVFKV 568
P L +LN L +
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 569 AYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604
+ NNLSG IP+ QF TF + NP LCG PL +
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 200/456 (43%), Gaps = 53/456 (11%)
Query: 21 MEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYI 80
++ L +S+N F PI PL +L L + + E + LT + LSG
Sbjct: 249 LKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNH 305
Query: 81 DGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHS 140
G P F L++ LS N SG+ P L L +L L+ N G + +
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 141 -HQNLATLDVSNNFFHGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 198
+L TLD+S+N F G I P L +L L N F G IP + ++ L L +
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 199 SDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
S N L+G IP + + L+ L L N L+G I + + L L LD N GEIP
Sbjct: 426 SFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 259 SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD 318
LS C L + LS+N L+GEIP+W+G L L +++ NN+ G IP E +L LD
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 319 LSNNSIFGTLPSC--------------------------------------FSPAHIEQV 340
L+ N GT+P+ F EQ+
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 341 HLSKNKIEGRLESII---HDSPY------LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA 391
+ + + S + H SP ++ LD+SYN L G IP I +P L L L
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 392 HNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
HN I G IP ++ L+ + ++DLS N L G IP +
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 208/421 (49%), Gaps = 50/421 (11%)
Query: 169 LMDLNLSRNAFNGSIPS--SFADMKMLERLDISDNQLTGEIPERMATGCF--SLKILALS 224
L L+LSRN+ +G + + S L+ L++S N L + P +++ G SL++L LS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 159
Query: 225 NNSLQGH-----IFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE 279
NS+ G + S L L + GNK G++ +S+C L L +S N+ S
Sbjct: 160 ANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215
Query: 280 IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQ 339
IP +LG+ SAL+ + + N L G + LK+L++S+N G +P ++
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQY 273
Query: 340 VHLSKNKIEGRLESIIHDS-PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE 398
+ L++NK G + + + L LDLS N +G++P L L L+ N GE
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 399 IPVQ-LCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC 457
+P+ L +++ ++++DLS N SG +P L N + S + ++ +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL---------SSNNFSGPI 384
Query: 458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHA 517
LP+ P + T+Q Y Q N TG+IP + S + +
Sbjct: 385 LPNLCQNP---KNTLQ------ELYLQN-------------NGFTGKIPPTLSNCSELVS 422
Query: 518 LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKI 577
L+LS N L+GTIP++ +L ++ L L N+L G+IP +L+ + TLE + +N+L+G+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 578 P 578
P
Sbjct: 483 P 483
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 175/421 (41%), Gaps = 51/421 (12%)
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG-CFSLKILALSNNSLQGHI 232
LS + NGS+ S F L LD+S N L+G + + G C LK L +S+N+L
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--- 139
Query: 233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE-IPRWL--GNLSA 289
F G++ L K L L LS N +SG + W+
Sbjct: 140 -------------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 290 LEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEG 349
L+ + + N + G + + C L+ LD+S+N+ +P + ++ + +S NK+ G
Sbjct: 180 LKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 350 RLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-QLKE 408
I L L++S N+ G IP L L YL LA N GEIP L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 409 VRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK 468
+ +DLS N+ G +P +S S LP + M
Sbjct: 296 LTGLDLSGNHFYGAVPPFF-----------GSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 469 EETVQFTTKNMSYYYQGRILTSMSG----IDLSCNKLTGEIPTQIGY--LSGIHALNLSH 522
+ + + S LT++S +DLS N +G I + + + L L +
Sbjct: 345 LKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQ 582
N TG IP T SN ++ SL LS+N L G IP L L+ L K+ N L G+IP
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 583 F 583
+
Sbjct: 464 Y 464
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
+NN +++ L ++ N L G I S L L++ +N G IP E+G L GL L+
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILD 686
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209
LS N +G IP + + + ML +D+S+N L+G IPE
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 162/575 (28%), Positives = 246/575 (42%), Gaps = 121/575 (21%)
Query: 144 LATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQL 203
L L +S N G + V + L L++S N F+ IP D L+ LDIS N+L
Sbjct: 177 LKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 204 TGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLS-K 262
+G+ ++T C LK+L +S+N G I L +L L L NKF GEIP+ LS
Sbjct: 233 SGDFSRAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSN 321
C L GL LS NH G +P + G+ S LE + + +NN G +P++ ++ LK+LDLS
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 322 NSIFGTLPS---------------------------CFSPAH-IEQVHLSKNKIEGRLES 353
N G LP C +P + +++++L N G++
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413
+ + LV+L LS+N L G+IP+ + L +L L L N ++GEIP +L +K + +
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 414 LSHNNLSGHIPSCLVNTA----LSGGHHEAVAPTSIWCGR----ASVYISACLPSRSAPP 465
L N+L+G IPS L N +S ++ W GR A + +S S + P
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 466 -MGKEETVQFTTKNMSYY----------YQGRILTSM-----------SGIDLSCN---- 499
+G ++ + N + + G+I + G+ C+
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 500 --KLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP--- 554
+ G Q+ LS + N++ G TF N + LD+SYN+L G IP
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 555 ---PQLIVLN------------------------------------------TLEVFKVA 569
P L +LN L ++
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 570 YNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604
NNLSG IP+ QF TF + NP LCG PL +
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 200/456 (43%), Gaps = 53/456 (11%)
Query: 21 MEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYI 80
++ L +S+N F PI PL +L L + + E + LT + LSG
Sbjct: 246 LKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNH 302
Query: 81 DGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHS 140
G P F L++ LS N SG+ P L L +L L+ N G + +
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Query: 141 -HQNLATLDVSNNFFHGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 198
+L TLD+S+N F G I P L +L L N F G IP + ++ L L +
Sbjct: 363 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 199 SDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
S N L+G IP + + L+ L L N L+G I + + L L LD N GEIP
Sbjct: 423 SFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 259 SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD 318
LS C L + LS+N L+GEIP+W+G L L +++ NN+ G IP E +L LD
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 319 LSNNSIFGTLPSC--------------------------------------FSPAHIEQV 340
L+ N GT+P+ F EQ+
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 341 HLSKNKIEGRLESII---HDSPY------LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA 391
+ + + S + H SP ++ LD+SYN L G IP I +P L L L
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 392 HNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
HN I G IP ++ L+ + ++DLS N L G IP +
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 209/429 (48%), Gaps = 66/429 (15%)
Query: 169 LMDLNLSRNAFNGSIPS--SFADMKMLERLDISDNQLTGEIPERMATGCF--SLKILALS 224
L L+LSRN+ +G + + S L+ L++S N L + P +++ G SL++L LS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 156
Query: 225 NNSLQGH-----IFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE 279
NS+ G + S L L + GNK G++ +S+C L L +S N+ S
Sbjct: 157 ANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 212
Query: 280 IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQ 339
IP +LG+ SAL+ + + N L G + LK+L++S+N G +P ++
Sbjct: 213 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQY 270
Query: 340 VHLSKNKIEGRLESIIHDS-PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE 398
+ L++NK G + + + L LDLS N +G++P L L L+ N GE
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 399 IPVQ-LCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC 457
+P+ L +++ ++++DLS N SG +P L N +SA
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN------------------------LSAS 366
Query: 458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRIL--------TSMSGIDLSCNKLTGEIPTQI 509
L T+ ++ N + G IL ++ + L N TG+IP +
Sbjct: 367 L-----------LTLDLSSNN----FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 510 GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 569
S + +L+LS N L+GTIP++ +L ++ L L N+L G+IP +L+ + TLE +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 570 YNNLSGKIP 578
+N+L+G+IP
Sbjct: 472 FNDLTGEIP 480
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 175/421 (41%), Gaps = 51/421 (12%)
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG-CFSLKILALSNNSLQGHI 232
LS + NGS+ S F L LD+S N L+G + + G C LK L +S+N+L
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--- 136
Query: 233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE-IPRWL--GNLSA 289
F G++ L K L L LS N +SG + W+
Sbjct: 137 -------------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 290 LEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEG 349
L+ + + N + G + + C L+ LD+S+N+ +P + ++ + +S NK+ G
Sbjct: 177 LKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 234
Query: 350 RLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-QLKE 408
I L L++S N+ G IP L L YL LA N GEIP L
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 409 VRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK 468
+ +DLS N+ G +P +S S LP + M
Sbjct: 293 LTGLDLSGNHFYGAVPPFF-----------GSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 469 EETVQFTTKNMSYYYQGRILTSMSG----IDLSCNKLTGEIPTQIGY--LSGIHALNLSH 522
+ + + S LT++S +DLS N +G I + + + L L +
Sbjct: 342 LKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQ 582
N TG IP T SN ++ SL LS+N L G IP L L+ L K+ N L G+IP
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 583 F 583
+
Sbjct: 461 Y 461
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
+NN +++ L ++ N L G I S L L++ +N G IP E+G L GL L+
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILD 683
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209
LS N +G IP + + + ML +D+S+N L+G IPE
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 115/262 (43%), Gaps = 30/262 (11%)
Query: 351 LESIIHDSPYLVTLDLS-YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 409
+ S + + PYL L + N L G IP I +L QL+YL + H + G IP L Q+K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 410 RLIDLSHNNLSGHIPSC------LVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSA 463
+D S+N LSG +P LV G P S G S ++ SR+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNR 185
Query: 464 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHN 523
+ + F N+++ +DLS N L G+ G ++L+ N
Sbjct: 186 --LTGKIPPTFANLNLAF------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 524 NLT---GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 580
+L G + + K + LDL N ++G +P L L L V++NNL G+IP
Sbjct: 232 SLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 581 AQFSTFEEDSYEGNPFLCGKPL 602
F+ +Y N LCG PL
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPL 309
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 183 IPSSFADMKMLERLDISD-NQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTN 241
IPSS A++ L L I N L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
L L + G IP+ LS+ L L S N LSG +P + +L L GI N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 302 GPIPIEFCQLSAL-KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPY 360
G IP + S L + +S N + G +P F+ ++ V LS+N +EG +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 361 LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
+ L+ N L + ++ LN L L +N I G +P L QLK + +++S NNL
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 421 GHIP 424
G IP
Sbjct: 282 GEIP 285
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 79 YIDG-----GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS 133
YI G G P + L ++H N+SG P++L + T LV L + N+L G+
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGT 140
Query: 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 193
I S NL + N G IP G++ + +SRN G IP +FA++ L
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199
Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLT-NLMRLQLDGNKF 252
+D+S N L G+ + + KI L+ NSL + K L+ NL L L N+
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKI-HLAKNSLAFDL--GKVGLSKNLNGLDLRNNRI 256
Query: 253 IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
G +P+ L++ L L +S N+L GEIP+ GNL + NN P+ C
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 154/382 (40%), Gaps = 56/382 (14%)
Query: 179 FNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN 238
FNG S+ + + DI D +I M G + + +L+ LQ H FS +
Sbjct: 216 FNGLQNSTTQSLWLGTFEDIDDE----DISSAMLKGLCEMSVESLN---LQEHRFSDISS 268
Query: 239 -----LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
T L L L G +P + LL L LS NH N +L +
Sbjct: 269 TTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL 327
Query: 294 RMPNNNLEGPIPIEFCQ-LSALKILDLSNNSIFGTLPSCFSP-----AHIEQVHLSKNKI 347
+ N + + + + L L+ LDLS+N I + C S +H++ ++LS N+
Sbjct: 328 YIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS--DCCSLQLKNLSHLQTLNLSHNEP 385
Query: 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNR-IDRLPQLNYLLLAHNYIKGEIPVQLCQL 406
G + P L LDL++ RLH + P L L L L + ++ L L
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 407 KEVRLIDLSHNNL-SGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPP 465
+R ++L N+ G I N + G E + +S CG S+
Sbjct: 446 PVLRHLNLKGNHFQDGTITK--TNLLQTVGSLEVLILSS--CGLLSI------------- 488
Query: 466 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNL 525
+++ G+ MS +DLS N LT + + +L GI+ LNL+ N++
Sbjct: 489 -----------DQQAFHSLGK----MSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSI 532
Query: 526 TGTIPTTFSNLKQIESLDLSYN 547
P L Q +++LS+N
Sbjct: 533 NIISPRLLPILSQQSTINLSHN 554
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 488 LTSMSGIDLSCNKLTGE--IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 545
L ++ +DLS N + Q+ LS + LNLSHN G F Q+E LDL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 546 YNLLHGKIPPQ-LIVLNTLEVFKVAY 570
+ LH P L+ L+V + Y
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTY 431
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 162/433 (37%), Gaps = 59/433 (13%)
Query: 157 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF 216
HIP ++ + + LNL+ N P++F L LD N ++ PE +
Sbjct: 18 HIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILP 73
Query: 217 SLKILALSNNSLQGHIFSKKFNL-TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 275
LK+L L +N L I + F TNL L L N L L LS N
Sbjct: 74 LLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 276 LSG-EIPRWLGNLSALEGIRMPNNNLE-GPIPIEFCQLSALKILDLSNNSIFGTLPSCF- 332
LS ++ + + E + N L +EF S+L+ LDLS+N + P CF
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQ 192
Query: 333 ---------------------------SPAHIEQVHLSKNKIEGRLESIIHDSPY--LVT 363
S I+ + L+ N++ ES + L
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI 423
LDLSYN LH LP L YL L +N I+ P L +R + L
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR------- 305
Query: 424 PSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYY 483
++S H + S + Y++ + P K T T +S Y
Sbjct: 306 --AFTKQSVSLASHPNIDDFSFQWLKYLEYLNM---DDNNIPSTKSNTF---TGLVSLKY 357
Query: 484 QGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLD 543
S+S S LT E + + S + LNL+ N+++ TFS L Q+ LD
Sbjct: 358 -----LSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLRILD 411
Query: 544 LSYNLLHGKIPPQ 556
L N + K+ Q
Sbjct: 412 LGLNEIEQKLSGQ 424
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 513 SGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-VLNTLEVFKVAYN 571
S I LNL+HN L PT F+ Q+ LD +N + K+ P+L +L L+V + +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPLLKVLNLQHN 83
Query: 572 NLSGKIPDRAQFST--FEED-------SYEGNPFLCGKPLSK-SCNHNGLTTV 614
LS F T E D + NPF K L K +HNGL++
Sbjct: 84 ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 196/531 (36%), Gaps = 63/531 (11%)
Query: 98 ADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMP---IHSHQNLATLDVSNNFF 154
AD SHL L+ P+ L +N+ +L L +N L R+P + LA LD N
Sbjct: 9 ADCSHLKLT-HIPDDL---PSNITVLNLTHNQLR---RLPPTNFTRYSQLAILDAGFNSI 61
Query: 155 HGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG 214
P E+ LP L LNL N + +F L LD+ N + +I
Sbjct: 62 SKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSI-HKIKSNPFKN 119
Query: 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL----LGGLY 270
+L L LS+N L L NL L L NK + E L +L L L
Sbjct: 120 QKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELE--FLGNSSLRKLD 177
Query: 271 LSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC-QLSALKI--LDLSNNSIFGT 327
LS N L P + L + + N L + + C +LS I L L+NN + T
Sbjct: 178 LSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLAT 237
Query: 328 LPSCFSP---AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQ 384
S FS ++ Q+ LS N + P L L L YN + P L
Sbjct: 238 SESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSN 297
Query: 385 LNYLLLAHNYIKGEIPV---------QLCQLKEVRLIDLSHNNLSGHIPSCLVNT--ALS 433
L YL L + K + + LK + +++ NN IPS NT L
Sbjct: 298 LRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN----IPSTKSNTFTGLV 353
Query: 434 GGHHEAVAPT--SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRIL--- 488
+ +++ T S+ ++S + K + S+ Q RIL
Sbjct: 354 SLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLG 413
Query: 489 -----TSMSG-----------IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT--IP 530
+SG I LS NK + + + L L L P
Sbjct: 414 LNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISP 473
Query: 531 TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
+ F L+ + LDLS N + L L LE+ +NNL ++ RA
Sbjct: 474 SPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL-ARLWKRA 523
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 142/333 (42%), Gaps = 60/333 (18%)
Query: 99 DLSHLNLSGQFPNWLLENNT-----NLVMLLLANNSLFGSFRMPIHSHQNLATLDV---- 149
DL L + Q P ++ NNT +L++L L N ++ + LA L+V
Sbjct: 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLT 111
Query: 150 ---------SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKMLERLDIS 199
S NFF +E+ L L N P+SF +M+ LD++
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEM---------LVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 200 DNQLTGEIPERMATGCFSLK---ILALSNNSLQG--------HIFSKKFNLTNLMRLQLD 248
N++ E + F K +L LS+ +LQ F T++ L L
Sbjct: 163 FNKVKSICEEDLLN--FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF 308
GN F ES++K + D +I + + S G + N + P F
Sbjct: 221 GNGF----KESMAKRFF-------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 309 CQLSA--LKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
L A +K DLS + IF L S FS +EQ+ L++N+I ++ +L+ L+
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 366 LSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKG 397
LS N L GSI +R+ + L +L L L++N+I+
Sbjct: 330 LSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 158/413 (38%), Gaps = 80/413 (19%)
Query: 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI 280
L + NN+ +G L++L+ L+LD N+F+ + + L L L+ +L G +
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Query: 281 --PRWLGNLSALEGIRMPNNNLEGPIPIEF-CQLSALKILDLSNNSIFGTLPS---CFSP 334
+ L++LE + + +NN++ P F + +LDL+ N + F
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 335 AHIEQVHLSKNKIEGRLESIIH----DSPY----LVTLDLSYNRLHGSIPNRI-DRLP-- 383
H + LS ++ E + +P+ + TLDLS N S+ R D +
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 384 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPT 443
++ L+L+++Y N S GH P
Sbjct: 240 KIQSLILSNSY----------------------------------NMGSSFGHTNFKDPD 265
Query: 444 SI-WCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT 502
+ + G + + C + K + S++ T + + L+ N++
Sbjct: 266 NFTFKGLEASGVKTC-------DLSKSKIFALLKSVFSHF------TDLEQLTLAQNEIN 312
Query: 503 GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNT 562
L+ + LNLS N L F NL ++E LDLSYN + + L
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372
Query: 563 LEVFKVAYNNLSGKIPDR--AQFSTFEEDSYEGNPFLCGKP----LSKSCNHN 609
L+ + N L +PD + ++ ++ NP+ C P LS+ N N
Sbjct: 373 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 50/305 (16%)
Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325
L L L+ HLS E+P L LS L+ + + N E CQ+SA L++ SI
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-----LCQISASNFPSLTHLSIK 333
Query: 326 GTLP------SCFSP-AHIEQVHLSKNKIEG------RLESIIHDSPYLVTLDLSYNRLH 372
G C ++ ++ LS + IE +L ++ H L +L+LSYN
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH----LQSLNLSYNEPL 389
Query: 373 GSIPNRIDRLPQLNYLLLAHNYIK---GEIPVQLCQLKEV-----RLIDLSHNNLSGHIP 424
PQL L LA +K + P Q L +V L+D+S L +P
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 425 SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQ 484
+ L + L G H + ++ + S +G+ E + + ++S Q
Sbjct: 450 A-LQHLNLQGNHFP----------KGNIQ-----KTNSLQTLGRLEILVLSFCDLSSIDQ 493
Query: 485 GRI--LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESL 542
L M+ +DLS N+LT + +L GI+ LNL+ N+++ +P+ L Q ++
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTI 552
Query: 543 DLSYN 547
+L N
Sbjct: 553 NLRQN 557
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Query: 94 DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
D K DL LS P+ T L +L L +N L +NL TL V++N
Sbjct: 38 DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
+P+ + L L +L L RN P F + L L + N+L +P+ +
Sbjct: 97 LQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
SLK L L NN L+ LT L L+LD N+ + +PE
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE 198
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 172 LNLSRNAFNGSIPS-SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG 230
L+L N + S+PS +F + L L ++DN+L +P + +L+ L +++N LQ
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 231 HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
L NL L+LD N+ P L L L N L L++L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEG 349
+ +R+ NN L+ F +L+ LK L L NN + F S ++ + L +N +
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
Query: 350 RLESIIHDSPYL 361
II+ + +L
Sbjct: 220 TCNGIIYMAKWL 231
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 3/176 (1%)
Query: 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG- 302
+L L NK ++ + L LYL+DN L L LE + + +N L+
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 303 PIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
PI + F QL L L L N + P F S + + L N+++ + + L
Sbjct: 101 PIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417
L L N+L D+L +L L L +N +K L++++++ L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 28/275 (10%)
Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
L+L +N FA LE L++++N ++ P F+L+ L L +N L+
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKLI 95
Query: 232 IFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE 291
L+NL +L + NK + + Y L L + DN L R L++LE
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 292 GIRMPNNNLEGPIPIE-------------------------FCQLSALKILDLSNNSIFG 326
+ + NL IP E F +L LK+L++S+
Sbjct: 156 QLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 327 TL-PSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL 385
T+ P+C ++ + ++ + + YL L+LSYN + + + L +L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 386 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
+ L + P L +R++++S N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 134/329 (40%), Gaps = 60/329 (18%)
Query: 99 DLSHLNLSGQFPNWLLENNT-----NLVMLLLANNSLFGSFRMPIHSHQNLATLDV---- 149
DL L + Q P ++ NNT +L++L L N ++ + LA L+V
Sbjct: 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLT 111
Query: 150 ---------SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKMLERLDIS 199
S NFF +E+ L L N P+SF +M+ LD++
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEM---------LVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 200 DNQLTGEIPERMATGCFSLK---ILALSNNSLQG--------HIFSKKFNLTNLMRLQLD 248
N++ E + F K +L LS+ +LQ F T++ L L
Sbjct: 163 FNKVKSICEEDLLN--FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF 308
GN F ES++K + D +I + + S G + N + P F
Sbjct: 221 GNGF----KESMAKRFF-------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 309 CQLSA--LKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
L A +K DLS + IF L S FS +EQ+ L++N+I ++ +L L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELA 329
Query: 366 LSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
L N+L S+P+ I DRL L + L N
Sbjct: 330 LDTNQLK-SVPDGIFDRLTSLQKIWLHTN 357
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 46/220 (20%)
Query: 183 IPSSFAD-MKMLERLDISDNQLTGE-IPERMATGCF-SLKILALSNNSLQ-----GHIFS 234
+P SF+ +K LE LD+S+N + E + G + SL+ L LS N L+ G I
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 383
Query: 235 KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR 294
L NL L + N F +P+S C E R+L NLS+ GIR
Sbjct: 384 --LTLKNLTSLDISRNTF-HPMPDS---CQW------------PEKMRFL-NLSS-TGIR 423
Query: 295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESI 354
+ ++ C L++LD+SNN++ S F P ++++++S+NK++ ++
Sbjct: 424 V----------VKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLKTLPDAS 470
Query: 355 IHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
+ P L+ + +S N+L S+P+ I DRL L + L N
Sbjct: 471 LF--PVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 114/493 (23%), Positives = 186/493 (37%), Gaps = 70/493 (14%)
Query: 166 LPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQ--LTGEIPERMATGCFSLKILA 222
L L L+LS+N + SF + L+ +D S NQ L E G +L +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFS 180
Query: 223 LSNNSLQGHIFSKKFNLTNLMR------LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
L+ NSL + N R L + GN + +I + S N +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS------------NAI 228
Query: 277 SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL--SALKILDLSNNSIFGTLPSCFSP 334
S L + G +N++ P F L S+++ LDLS+ +F F
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288
Query: 335 -AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393
++ ++L+ NKI + + L L+LSYN L + LP++ Y+ L N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 394 YIKGEIPVQLCQLKEVRLIDLSHNNLSG-HIPSCLVNTALSGGHHEAVAPTSIWCGRASV 452
+I L++++ +DL N L+ H + + LSG + +
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL---------PKI 399
Query: 453 YISACLPSRSAPPMGKEETVQFTTK----NMSYYYQGRILT-----------SMSGIDLS 497
++A L S + + + F + + Q R + S+ + L
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459
Query: 498 CNKLTGEIPTQIGY-----LSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL--- 549
N L T++ + LS + L L+HN L P FS+L + L L+ N L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Query: 550 -HGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSC-- 606
H +P LE+ ++ N L PD F + N F+C LS
Sbjct: 520 SHNDLPA------NLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECELSTFINW 571
Query: 607 -NHNGLTTVTPEA 618
NH +T P A
Sbjct: 572 LNHTNVTIAGPPA 584
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 144/365 (39%), Gaps = 76/365 (20%)
Query: 56 AETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNAD-----------LSHLN 104
+ ++++ K Q S+ L+ +I G F H++K+ D + HL+
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGF-----HNIKDPDQNTFAGLARSSVRHLD 272
Query: 105 LSGQFP----NWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPV 160
LS F + + E +L +L LA N + + NL L++S N G +
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYS 331
Query: 161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG-----EIPERMATGC 215
LP + ++L +N +F ++ L+ LD+ DN LT IP+ +G
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391
Query: 216 ---------FSLKILALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKFIG----EIPE--- 258
+ ++ LS N L+ I + +L L L+ N+F + P
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451
Query: 259 SLSKCYL-----------------------LGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
SL + +L L LYL+ N+L+ P +L+AL G+ +
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 296 PNNNL----EGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL 351
+N L +P + L+ILD+S N + P F + + +K E L
Sbjct: 512 NSNRLTVLSHNDLP------ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565
Query: 352 ESIIH 356
+ I+
Sbjct: 566 STFIN 570
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 46/220 (20%)
Query: 183 IPSSFAD-MKMLERLDISDNQLTGE-IPERMATGCF-SLKILALSNNSLQ-----GHIFS 234
+P SF+ +K LE LD+S+N + E + G + SL+ L LS N L+ G I
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 409
Query: 235 KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR 294
L NL L + N F +P+S C E R+L NLS+ GIR
Sbjct: 410 --LTLKNLTSLDISRNTF-HPMPDS---CQW------------PEKMRFL-NLSS-TGIR 449
Query: 295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESI 354
+ ++ C L++LD+SNN++ S F P ++++++S+NK++ ++
Sbjct: 450 V----------VKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLKTLPDAS 496
Query: 355 IHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
+ P L+ + ++ N+L S+P+ I DRL L + L N
Sbjct: 497 LF--PVLLVMKIASNQLK-SVPDGIFDRLTSLQKIWLHTN 533
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 153 FFHG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN-QLTGEI 207
F HG H+P L L L N ++F + +LE+LD+SDN QL
Sbjct: 37 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 96
Query: 208 P-------------------ERMATGCF----SLKILALSNNSLQGHIFSKKFNLTNLMR 244
P + + G F +L+ L L +N+LQ +L NL
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 245 LQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
L L GN+ I +PE + + L L L N ++ P +L L + + NNL
Sbjct: 157 LFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA- 214
Query: 304 IPIE-FCQLSALKILDLSNN 322
+P E L AL+ L L++N
Sbjct: 215 LPTEALAPLRALQYLRLNDN 234
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 6/182 (3%)
Query: 244 RLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN-NLE 301
R+ L GN+ I +P S C L L+L N L+ L+ LE + + +N L
Sbjct: 35 RIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPY 360
P F L L L L + P F A ++ ++L N ++ + D
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 361 LVTLDLSYNRLHGSIPNRIDR-LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
L L L NR+ S+P R R L L+ LLL N + P L + + L NNL
Sbjct: 154 LTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 420 SG 421
S
Sbjct: 213 SA 214
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 153 FFHG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN-QLTGEI 207
F HG ++P L L L NA G ++F + +LE+LD+SDN QL
Sbjct: 37 FLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 208 P-------------------ERMATGCF----SLKILALSNNSLQGHIFSKKFNLTNLMR 244
P + + G F +L+ L L +N+LQ + +L NL
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 245 LQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
L L GN+ I +PE + + L L L NH++ P +L L + + NNL
Sbjct: 157 LFLHGNR-IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM- 214
Query: 304 IPIE-FCQLSALKILDLSNN 322
+P E L +L+ L L++N
Sbjct: 215 LPAEVLVPLRSLQYLRLNDN 234
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 4/180 (2%)
Query: 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN-NLEG 302
R+ L GN+ S C L L+L N L+G L+ LE + + +N L
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 303 PIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYL 361
P F L L L L + P F A ++ ++L N ++ ++ D L
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 362 VTLDLSYNRLHGSIPNRIDR-LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
L L NR+ S+P R L L+ LLL N++ P L + + L NNLS
Sbjct: 155 THLFLHGNRI-PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 153 FFHG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN-QLTGEI 207
F HG H+P L L L N ++F + +LE+LD+SDN QL
Sbjct: 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97
Query: 208 P-------------------ERMATGCF----SLKILALSNNSLQGHIFSKKFNLTNLMR 244
P + + G F +L+ L L +N+LQ +L NL
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 245 LQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
L L GN+ I +PE + + L L L N ++ P +L L + + NNL
Sbjct: 158 LFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA- 215
Query: 304 IPIE-FCQLSALKILDLSNN 322
+P E L AL+ L L++N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 6/182 (3%)
Query: 244 RLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN-NLE 301
R+ L GN+ I +P S C L L+L N L+ L+ LE + + +N L
Sbjct: 36 RIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPY 360
P F L L L L + P F A ++ ++L N ++ + D
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 361 LVTLDLSYNRLHGSIPNRIDR-LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
L L L NR+ S+P R R L L+ LLL N + P L + + L NNL
Sbjct: 155 LTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 420 SG 421
S
Sbjct: 214 SA 215
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 22/213 (10%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
L N TNL L L NN + + P+ + NL L++S+N + + L L LN
Sbjct: 103 LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLN 157
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233
S N P A++ LERLDIS N+++ + +L+ L +NN +
Sbjct: 158 FSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISD--I 210
Query: 234 SKKFNLTNLMRLQLDGN--KFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE 291
+ LTNL L L+GN K IG +L+ L L L++N +S P L L+ L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 264
Query: 292 GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
+++ N + P+ L+AL L+L+ N +
Sbjct: 265 ELKLGANQISNISPL--AGLTALTNLELNENQL 295
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 99 DLSHLNLSGQFPNWLLENNTNLVMLLLANNSL-FGSFR--MPIHSHQNLATLDVSNNFFH 155
DLSH NLS W TNL LLL++N L F S +P+ NL LD+S+N H
Sbjct: 45 DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLRYLDLSSNHLH 101
Query: 156 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG- 214
+ + + L L L L N ++F DM L++L +S NQ++ E + G
Sbjct: 102 T-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 215 -CFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
L +L LS+N L KK LT+L +L
Sbjct: 161 KLPKLMLLDLSSNKL------KKLPLTDLQKL 186
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 494 IDLSCN---KLTGE-IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 549
+DLS N +L E PT+ L+ +H+L LSHN+L F + + LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTR---LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 550 HGKIPPQLIVLNTLEVFKVAYNN 572
H L LEV + YNN
Sbjct: 101 HTLDEFLFSDLQALEVL-LLYNN 122
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 145/327 (44%), Gaps = 52/327 (15%)
Query: 245 LQLDGNKFIGEIPESLSKCYL-LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
+ L ++F ++ S +C+ + L L+ HL+G +P + +++L+ + + N+ +
Sbjct: 258 INLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD-- 313
Query: 304 IPIEFCQLSALKILDLSNNSIFGTL------PSCFSP-AHIEQVHLSKNKIEG------R 350
+ CQ++A L + I G + C +++++ LS + IE +
Sbjct: 314 ---QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 351 LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEV 409
L+++ H L L+LSYN G PQL L +A ++ + P Q L +
Sbjct: 371 LKNLRH----LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLL 426
Query: 410 RLIDLSHNNLSGHIPSCLVNTA-------LSGGHHEAVAPTSIWCGRASVYISACLPSRS 462
R+++LSH CL++T+ L H + S G S +
Sbjct: 427 RVLNLSH---------CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSIS-------KTNL 470
Query: 463 APPMGKEETVQFTTKNMSYYYQGRI--LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL 520
+G E + ++ N+ Q L +++ +DLS N LTG+ + +L G++ LN+
Sbjct: 471 LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNM 529
Query: 521 SHNNLTGTIPTTFSNLKQIESLDLSYN 547
+ NN+ P L Q ++LS+N
Sbjct: 530 ASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 508 QIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 554
Q+ L + LNLS+N G F Q+E LD+++ LH K P
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 24/254 (9%)
Query: 169 LMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSL 228
L L L+ N+F+ + A L L I N ++ R +L+ L LS++ +
Sbjct: 302 LKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI 361
Query: 229 QGHIFS--KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRW-LG 285
+ + NL +L L L N+ +G ++ +C L L ++ HL + P
Sbjct: 362 EASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQ 421
Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
NL L + + + L+ L L+ L+L NS F I + +L +
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS--------FQDGSISKTNLLQ- 472
Query: 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405
+ G LE +I S L+++D HG L +N+L L+HN + G+ L
Sbjct: 473 -MVGSLEILILSSCNLLSID--QQAFHG--------LRNVNHLDLSHNSLTGDSMDALSH 521
Query: 406 LKEVRLIDLSHNNL 419
LK + L +++ NN+
Sbjct: 522 LKGLYL-NMASNNI 534
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 108/255 (42%), Gaps = 39/255 (15%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
L N TNL L L NN + + P+ + NL L++S+N + + L L L+
Sbjct: 103 LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLS 157
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLT------------------GEIPERMATGC 215
S N P A++ LERLDIS N+++ +I + G
Sbjct: 158 FSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 215
Query: 216 FS-LKILALSNNSLQ--GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLS 272
+ L L+L+ N L+ G + S LTNL L L N+ P LS L L L
Sbjct: 216 LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF 332
N +S P L L+AL + + N LE PI L L L L N+I P
Sbjct: 270 ANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP-VS 324
Query: 333 SPAHIEQVHLSKNKI 347
S ++++ S NK+
Sbjct: 325 SLTKLQRLFFSNNKV 339
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 126/318 (39%), Gaps = 84/318 (26%)
Query: 153 FFHGHIPVEIGTYLPGLMDLNLS-------RNAFNGSIPSSFAD-MKMLERLDISDNQLT 204
F+ HI ++ G D+ L+ +N+ +P++ D + +E L+++D Q+
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI- 81
Query: 205 GEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCY 264
E + T F+ H K + N +R ++ P
Sbjct: 82 ----EEIDTYAFAY-----------AHTIQKLYMGFNAIR-------YLP--PHVFQNVP 117
Query: 265 LLGGLYLSDNHLSGEIPRWL-GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNS 323
LL L L N LS +PR + N L + M NNNLE F ++L+ L LS+N
Sbjct: 118 LLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 324 I----FGTLPSCFS-------------PAHIEQVHLSKNKI---------EGRLESIIHD 357
+ +PS F P +E++ S N I E + + H+
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236
Query: 358 S----------PYLVTLDLSYNRLHGSI------PNRIDRLPQLNYLLLAHNYIKGEIPV 401
+ P LV +DLSYN L + R++RL N L+A N IP
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296
Query: 402 QLCQLKEVRLIDLSHNNL 419
++++DLSHN+L
Sbjct: 297 -------LKVLDLSHNHL 307
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG------EIPERMATGCFSLKI 220
PGL++++LS N + F M+ LERL IS+N+L IP +LK+
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 299
Query: 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
L LS+N L H+ + L L LD N + LS + L L LS N
Sbjct: 300 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 349
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 126/318 (39%), Gaps = 84/318 (26%)
Query: 153 FFHGHIPVEIGTYLPGLMDLNLS-------RNAFNGSIPSSFAD-MKMLERLDISDNQLT 204
F+ HI ++ G D+ L+ +N+ +P++ D + +E L+++D Q+
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI- 87
Query: 205 GEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCY 264
E + T F+ H K + N +R ++ P
Sbjct: 88 ----EEIDTYAFAY-----------AHTIQKLYMGFNAIR-------YLP--PHVFQNVP 123
Query: 265 LLGGLYLSDNHLSGEIPRWL-GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNS 323
LL L L N LS +PR + N L + M NNNLE F ++L+ L LS+N
Sbjct: 124 LLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 324 I----FGTLPSCFS-------------PAHIEQVHLSKNKI---------EGRLESIIHD 357
+ +PS F P +E++ S N I E + + H+
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242
Query: 358 S----------PYLVTLDLSYNRLHGSI------PNRIDRLPQLNYLLLAHNYIKGEIPV 401
+ P LV +DLSYN L + R++RL N L+A N IP
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302
Query: 402 QLCQLKEVRLIDLSHNNL 419
++++DLSHN+L
Sbjct: 303 -------LKVLDLSHNHL 313
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG------EIPERMATGCFSLKI 220
PGL++++LS N + F M+ LERL IS+N+L IP +LK+
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 305
Query: 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
L LS+N L H+ + L L LD N + LS + L L LS N
Sbjct: 306 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 355
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 94/252 (37%), Gaps = 51/252 (20%)
Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY--LPGLMDLNLSRNAFNGSIPSS 186
S G ++P + A LD+ NN ++ G + L L L L N + P +
Sbjct: 39 SDLGLEKVPKDLPPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 187 FADMKMLERLDISDNQLTGEIPERMAT-------------------------------GC 215
FA + LERL +S NQL E+PE+M G
Sbjct: 96 FAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 216 FSLKILALSNNSLQG-----HIFSKKFNLT--------NLMRLQLDGNKFIGEIPESLSK 262
LK + N + QG +I N+T +L L LDGNK SL
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 214
Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322
L L LS N +S L N L + + NN L +P ++++ L NN
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN 273
Query: 323 SIFGTLPSCFSP 334
+I + F P
Sbjct: 274 NISAIGSNDFCP 285
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 25/205 (12%)
Query: 9 KTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPK 68
K S + L+ +E+L LS N ++P + L +L+ + EI +S +N L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLN-- 145
Query: 69 FQLTSISL------SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVM 122
Q+ + L S I+ G F + + ++ AD + + P L E
Sbjct: 146 -QMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITTIPQGLPPSLTE------- 196
Query: 123 LLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYL--PGLMDLNLSRNAFN 180
L L N + + NLA L +S F+ V+ G+ P L +L+L+ N
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLS---FNSISAVDNGSLANTPHLRELHLNNNKL- 252
Query: 181 GSIPSSFADMKMLERLDISDNQLTG 205
+P AD K ++ + + +N ++
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 553
+DL NK+T L +H L L +N ++ P F+ L ++E L LS N L ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 554 PPQLIVLNTLEVFKVAYNNLS 574
P ++ TL+ +V N ++
Sbjct: 116 PEKMP--KTLQELRVHENEIT 134
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 94/252 (37%), Gaps = 51/252 (20%)
Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY--LPGLMDLNLSRNAFNGSIPSS 186
S G ++P + A LD+ NN ++ G + L L L L N + P +
Sbjct: 39 SDLGLEKVPKDLPPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 187 FADMKMLERLDISDNQLTGEIPERMAT-------------------------------GC 215
FA + LERL +S NQL E+PE+M G
Sbjct: 96 FAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 216 FSLKILALSNNSLQG-----HIFSKKFNLT--------NLMRLQLDGNKFIGEIPESLSK 262
LK + N + QG +I N+T +L L LDGNK SL
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 214
Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322
L L LS N +S L N L + + NN L +P ++++ L NN
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN 273
Query: 323 SIFGTLPSCFSP 334
+I + F P
Sbjct: 274 NISAIGSNDFCP 285
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 25/205 (12%)
Query: 9 KTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPK 68
K S + L+ +E+L LS N ++P + L +L+ + EI +S +N L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLN-- 145
Query: 69 FQLTSISL------SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVM 122
Q+ + L S I+ G F + + ++ AD + + P L E
Sbjct: 146 -QMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITTIPQGLPPSLTE------- 196
Query: 123 LLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYL--PGLMDLNLSRNAFN 180
L L N + + NLA L +S F+ V+ G+ P L +L+L+ N
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLS---FNSISAVDNGSLANTPHLRELHLNNNKL- 252
Query: 181 GSIPSSFADMKMLERLDISDNQLTG 205
+P AD K ++ + + +N ++
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 553
+DL NK+T L +H L L +N ++ P F+ L ++E L LS N L ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 554 PPQLIVLNTLEVFKVAYNNLS 574
P ++ TL+ +V N ++
Sbjct: 116 PEKMP--KTLQELRVHENEIT 134
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 22/213 (10%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
L N TNL L L NN + + P+ + NL L++S+N + + L L L+
Sbjct: 103 LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLS 157
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233
S N P A++ LERLDIS N+++ + +L+ L +NN +
Sbjct: 158 FSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISD--I 210
Query: 234 SKKFNLTNLMRLQLDGN--KFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE 291
+ LTNL L L+GN K IG +L+ L L L++N +S P L L+ L
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 264
Query: 292 GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
+++ N + P+ L+AL L+L+ N +
Sbjct: 265 ELKLGANQISNISPL--AGLTALTNLELNENQL 295
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 27/213 (12%)
Query: 158 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFS 217
I V +L L L LSRN +F + L L++ DN+LT IP
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSK 137
Query: 218 LKILALSNNSLQGHIFSKKFN-LTNLMRLQLDGNKFIGEIPE------------SLSKCY 264
LK L L NN ++ I S FN + +L RL L K + I E +L+ C
Sbjct: 138 LKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 265 L-----------LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313
L L L LS NHLS P L L+ + M + ++ F L +
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 314 LKILDLSNNSIFGTLPSCFSPA-HIEQVHLSKN 345
L ++L++N++ F+P H+E++HL N
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 115 ENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL 174
+N N + ++ANNS S + I N+ L + N H + L L L L
Sbjct: 37 QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD---ISALKELTNLTYLIL 92
Query: 175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG---H 231
+ N F + L+ L + +NQL +P+ + +L L L +N LQ
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 232 IFSKKFNLTNLMRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
+F K LTNL RL LD N+ + +PE + K L L L+DN L L++L
Sbjct: 152 VFDK---LTNLTRLDLDNNQ-LQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Query: 291 EGIRMPNN 298
I + NN
Sbjct: 208 THIWLLNN 215
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 98 ADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
+L++L L+G PN + + TNL L+L N L NL L + +N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
+P + L L L+L N F + L++L ++DNQL +P+ +
Sbjct: 145 LQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFD 202
Query: 214 GCFSLKILALSNN 226
SL + L NN
Sbjct: 203 RLTSLTHIWLLNN 215
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 10/208 (4%)
Query: 142 QNLATLDVSNNFFHGHIPVEIGTY--LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 199
++L L +S N +E+G + LP L L L N +F + L L +
Sbjct: 59 RHLEILQLSKNLVRK---IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 200 DNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN-LTNLMRLQLDGNKFIGEIPE 258
+N + IP SL+ L L +I F L NL L L G + +IP
Sbjct: 116 NNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIP- 172
Query: 259 SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD 318
+L+ L L LS N L P L++L + + + + F L +L+ L+
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 319 LSNNSIFGTLPSCFSPAH-IEQVHLSKN 345
LS+N++ F+P H +E+VHL+ N
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
L + ++LS N+L P L+ + L L H + F +LK +E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 9/215 (4%)
Query: 220 ILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE 279
+L L NN + L +L L L NK ++ S L LY+S NHL E
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 280 IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQ 339
IP L S+L +R+ +N + F L + +++ N + S F P +
Sbjct: 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---SGFEPGAFDG 171
Query: 340 VHLSKNKI-EGRLESIIHDSP-YLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG 397
+ L+ +I E +L I D P L L L +N++ + R +L L L HN I+
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 398 EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTAL 432
L L +R + L +N LS +P+ L + L
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 29/190 (15%)
Query: 158 IPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISDNQLTGEIPERMATGCF 216
+P + YL L +L L N SIPS +F + L RLD+ + + I E G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 217 SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
+L+ L L +L+ NLT L+RL+ L LS N L
Sbjct: 157 NLRYLNLGMCNLK-----DIPNLTALVRLE---------------------ELELSGNRL 190
Query: 277 SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH 336
P L++L + + + + F L +L+ L+LS+N++ F+P H
Sbjct: 191 DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLH 250
Query: 337 -IEQVHLSKN 345
+E+VHL+ N
Sbjct: 251 RLERVHLNHN 260
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 18/225 (8%)
Query: 107 GQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN--FFHGHIP-VEIG 163
GQFP L++ L + F +P +L LD+S N F G + G
Sbjct: 341 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG 395
Query: 164 TYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL 221
T +DL +FNG I S+F ++ LE LD + L + +L L
Sbjct: 396 TISLKYLDL-----SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450
Query: 222 ALSNNSLQGHIFSKKFN-LTNLMRLQLDGNKFIGE-IPESLSKCYLLGGLYLSDNHLSGE 279
+S+ + F+ FN L++L L++ GN F +P+ ++ L L LS L
Sbjct: 451 DISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 280 IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
P +LS+L+ + M +NN + L++L++LD S N I
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
L +++ +DLS +L PT LS + LN+SHNN + L ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 18/225 (8%)
Query: 107 GQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN--FFHGHIP-VEIG 163
GQFP L++ L + F +P +L LD+S N F G + G
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 164 TYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL 221
T +DL +FNG I S+F ++ LE LD + L + +L L
Sbjct: 372 TTSLKYLDL-----SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 222 ALSNNSLQGHIFSKKFN-LTNLMRLQLDGNKFIGE-IPESLSKCYLLGGLYLSDNHLSGE 279
+S+ + F+ FN L++L L++ GN F +P+ ++ L L LS L
Sbjct: 427 DISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 280 IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
P +LS+L+ + M +NN + L++L++LD S N I
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
L +++ +DLS +L PT LS + LN+SHNN + L ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 472 VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIP 530
V TKNMS S+ +D+S N L + + I LNLS N LTG++
Sbjct: 395 VALMTKNMS---------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV- 444
Query: 531 TTFSNL-KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA--QFSTFE 587
F L +++ LDL N + IP + L L+ VA N L +PD + ++ +
Sbjct: 445 --FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500
Query: 588 EDSYEGNPFLCGKP 601
NP+ C P
Sbjct: 501 YIWLHDNPWDCTCP 514
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Query: 166 LPGLMDLNLSRNAFNGSIPSSF--ADMKMLERLDISDNQLTGEIPERMATGCFSLKILAL 223
L L L L RN + +M LE LD+S N L +R S+ +L L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 224 SNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRW 283
S+N L G +F ++ L N I IP+ ++ L L ++ N L
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 284 LGNLSALEGIRMPNNNLEGPIP 305
L++L+ I + +N + P
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCP 514
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 469 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT 528
E V ++ +N+++ + + + LS N ++ I +LS + L LSHN +
Sbjct: 33 ESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91
Query: 529 IPTTFSNLKQIESLDLSYNLLHG 551
F + +E LD+S+N L
Sbjct: 92 DFHVFLFNQDLEYLDVSHNRLQN 114
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 145 ATLDVSNNFF--HGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN 201
A SNN G EI T LP + ++ L +N P +F+ K L R+D+S+N
Sbjct: 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66
Query: 202 QLTGEIPERMATGCFSLKILALSNNSL 228
Q++ P+ G SL L L N +
Sbjct: 67 QISELAPDAFQ-GLRSLNSLVLYGNKI 92
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 554
D S KLT ++P + + I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 65
Query: 555 PQLI-VLNTLEVFKVAYNNLSGKIPDRAQFSTFEED---------SYEGNPFLCGKPL-S 603
P+L L L+V + +N LS F T + + NPF+ K L +
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 604 KSCNHNGLTTV 614
+HNGL++
Sbjct: 126 LDLSHNGLSST 136
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 155/418 (37%), Gaps = 56/418 (13%)
Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
LNL+ N ++F L LD+ N ++ PE + LK+L L +N L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 87
Query: 232 IFSKKFNL-TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
+ K F TNL L L N K L L LS N LS L L
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 291 EGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIFGTLPSCF---------------- 332
+ + + NN ++ ++ S+LK L+LS+N I P CF
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 333 SPAHIEQVHLSKNKIEGRLESIIHDS--------------PYLVTLDLSYNRLHGSIPNR 378
P+ E++ L R S+ + L LDLSYN L+ +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 379 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE 438
LPQL Y L +N I+ L L VR ++L + ++S
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------FTKQSISLASLP 318
Query: 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC 498
+ S + +++ + P G + + N+ Y S+S S
Sbjct: 319 KIDDFSFQWLKCLEHLN--MEDNDIP--GIKSNMFTGLINLKYL-------SLSNSFTSL 367
Query: 499 NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 556
LT E + + S +H LNL+ N ++ FS L +E LDL N + ++ Q
Sbjct: 368 RTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 97/244 (39%), Gaps = 59/244 (24%)
Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
SF +K LE L++ DN + G I M TG +LK L+LSN+ F+ LTN +
Sbjct: 324 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 376
Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS---GEIPRWLGNLSALE------GIRMP 296
L + L L L+ N +S + WLG+L L+ G +
Sbjct: 377 SLAHSP--------------LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
G I LS K L L+ NS F +PS L+ ++
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPS--------------------LQRLML 461
Query: 357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 416
L +D S P+ L L L L++N I L L+++ ++DL H
Sbjct: 462 RRVALKNVD--------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 417 NNLS 420
NNL+
Sbjct: 514 NNLA 517
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 145 ATLDVSNNFF--HGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN 201
A SNN G EI T LP + ++ L +N P +F+ K L R+D+S+N
Sbjct: 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66
Query: 202 QLTGEIPERMATGCFSLKILALSNNSL 228
Q++ P+ G SL L L N +
Sbjct: 67 QISELAPDAFQ-GLRSLNSLVLYGNKI 92
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 554
D S KLT ++P + + I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 70
Query: 555 PQLI-VLNTLEVFKVAYNNLSGKIPDRAQFSTFEED---------SYEGNPFLCGKPL-S 603
P+L L L+V + +N LS F T + + NPF+ K L +
Sbjct: 71 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 604 KSCNHNGLTTV 614
+HNGL++
Sbjct: 131 LDLSHNGLSST 141
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 155/418 (37%), Gaps = 56/418 (13%)
Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
LNL+ N ++F L LD+ N ++ PE + LK+L L +N L
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 92
Query: 232 IFSKKFNL-TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
+ K F TNL L L N K L L LS N LS L L
Sbjct: 93 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 152
Query: 291 EGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIFGTLPSCF---------------- 332
+ + + NN ++ ++ S+LK L+LS+N I P CF
Sbjct: 153 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 212
Query: 333 SPAHIEQVHLSKNKIEGRLESIIHDS--------------PYLVTLDLSYNRLHGSIPNR 378
P+ E++ L R S+ + L LDLSYN L+ +
Sbjct: 213 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 272
Query: 379 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE 438
LPQL Y L +N I+ L L VR ++L + ++S
Sbjct: 273 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------FTKQSISLASLP 323
Query: 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC 498
+ S + +++ + P G + + N+ Y S+S S
Sbjct: 324 KIDDFSFQWLKCLEHLN--MEDNDIP--GIKSNMFTGLINLKYL-------SLSNSFTSL 372
Query: 499 NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 556
LT E + + S +H LNL+ N ++ FS L +E LDL N + ++ Q
Sbjct: 373 RTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 429
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 96/241 (39%), Gaps = 53/241 (21%)
Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
SF +K LE L++ DN + G I M TG +LK L+LSN+ F+ LTN +
Sbjct: 329 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 381
Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE------GIRMPNNN 299
L + S ++L + + + WLG+L L+ G +
Sbjct: 382 SL-----------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 430
Query: 300 LEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSP 359
G I LS K L L+ NS F +PS L+ ++
Sbjct: 431 WRGLENIFEIYLSYNKYLQLTRNS-FALVPS--------------------LQRLMLRRV 469
Query: 360 YLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
L +D S P+ L L L L++N I L L+++ ++DL HNNL
Sbjct: 470 ALKNVD--------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Query: 420 S 420
+
Sbjct: 522 A 522
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 554
D S KLT ++P + + I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 75
Query: 555 PQLI-VLNTLEVFKVAYNNLSGKIPDRAQFSTFEED---------SYEGNPFLCGKPL-S 603
P+L L L+V + +N LS F T + + NPF+ K L +
Sbjct: 76 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 604 KSCNHNGLTTV 614
+HNGL++
Sbjct: 136 LDLSHNGLSST 146
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 155/418 (37%), Gaps = 56/418 (13%)
Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
LNL+ N ++F L LD+ N ++ PE + LK+L L +N L
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNEL-SQ 97
Query: 232 IFSKKFNL-TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
+ K F TNL L L N K L L LS N LS L L
Sbjct: 98 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 157
Query: 291 EGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIFGTLPSCF---------------- 332
+ + + NN ++ ++ S+LK L+LS+N I P CF
Sbjct: 158 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 217
Query: 333 SPAHIEQVHLSKNKIEGRLESIIHDS--------------PYLVTLDLSYNRLHGSIPNR 378
P+ E++ L R S+ + L LDLSYN L+ +
Sbjct: 218 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 277
Query: 379 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE 438
LPQL Y L +N I+ L L VR ++L + ++S
Sbjct: 278 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------FTKQSISLASLP 328
Query: 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC 498
+ S + +++ + P G + + N+ Y S+S S
Sbjct: 329 KIDDFSFQWLKCLEHLN--MEDNDIP--GIKSNMFTGLINLKYL-------SLSNSFTSL 377
Query: 499 NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 556
LT E + + S +H LNL+ N ++ FS L +E LDL N + ++ Q
Sbjct: 378 RTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 434
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 96/241 (39%), Gaps = 53/241 (21%)
Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
SF +K LE L++ DN + G I M TG +LK L+LSN+ F+ LTN +
Sbjct: 334 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 386
Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE------GIRMPNNN 299
L + S ++L + + + WLG+L L+ G +
Sbjct: 387 SL-----------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 435
Query: 300 LEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSP 359
G I LS K L L+ NS F +PS L+ ++
Sbjct: 436 WRGLENIFEIYLSYNKYLQLTRNS-FALVPS--------------------LQRLMLRRV 474
Query: 360 YLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
L +D S P+ L L L L++N I L L+++ ++DL HNNL
Sbjct: 475 ALKNVD--------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
Query: 420 S 420
+
Sbjct: 527 A 527
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSPA-HIEQVHLSKNKIEGRLESIIHDSPYLVTLDL 366
F +L L L+L N + G P+ F A HI+++ L +NKI+ + L TL+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 367 SYNRLHGSIPNRIDRLPQLNYLLLAHN 393
N++ +P + L L L LA N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 334 PAHIEQVHLSKNKIEGRLES--IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA 391
P H ++ L+ N++ GR+ S + P+LV L+L N+L G PN + + L L
Sbjct: 28 PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86
Query: 392 HNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP 424
N IK L +++ ++L N +S +P
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 6/161 (3%)
Query: 147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFN--GSIPSSFADMKMLERLDISDNQLT 204
LD SNN + G +L L L L N I MK L++LDIS N ++
Sbjct: 329 LDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 205 GEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCY 264
+ + + SL L +S+N L IF + + L L NK I IP+ + K
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNK-IKSIPKQVVKLE 444
Query: 265 LLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305
L L ++ N L L++L+ I + N + P
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 107/255 (41%), Gaps = 40/255 (15%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
L N TNL L L NN + + P+ + NL L++S+N + + L L LN
Sbjct: 103 LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLN 157
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLT------------------GEIPERMATGC 215
N P A++ LERLDIS N+++ +I + G
Sbjct: 158 FG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 214
Query: 216 FS-LKILALSNNSLQ--GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLS 272
+ L L+L+ N L+ G + S LTNL L L N+ P LS L L L
Sbjct: 215 LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF 332
N +S P L L+AL + + N LE PI L L L L N+I P
Sbjct: 269 ANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP-VS 323
Query: 333 SPAHIEQVHLSKNKI 347
S ++++ S NK+
Sbjct: 324 SLTKLQRLFFSNNKV 338
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 26/143 (18%)
Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMP--------NNNLEGPIPIEFCQLSALKI- 316
L L LSDN GE G +SAL ++ P N +E P + L+A ++
Sbjct: 175 LSTLDLSDNPELGE----RGLISALCPLKFPTLQVLALRNAGMETPSGV-CSALAAARVQ 229
Query: 317 ---LDLSNNSI--FGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPY-LVTLDLSYNR 370
LDLS+NS+ PSC P+ + ++LS L+ + P L LDLSYNR
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG----LKQVPKGLPAKLSVLDLSYNR 285
Query: 371 LHGSIPNRIDRLPQLNYLLLAHN 393
L + D LPQ+ L L N
Sbjct: 286 LDRN--PSPDELPQVGNLSLKGN 306
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 513 SGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN 572
+ + L+L+H +LT + L + LDLS+N L +PP L L LEV + + N
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA 497
Query: 573 LS 574
L
Sbjct: 498 LE 499
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 513 SGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN 572
+ + L+L+H +LT + L + LDLS+N L +PP L L LEV + + N
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA 497
Query: 573 LS 574
L
Sbjct: 498 LE 499
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 317 LDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375
LDL NS+ F + Q++L NK++ + + L L+LS N+L S+
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 376 PNRI-DRLPQLNYLLLAHNYIKG---EIPVQLCQLKEVRL 411
PN + D+L QL L L N ++ + +L QLK++RL
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSN 151
Q +L +L+ L + G P L L L++N L S + + L LDVS
Sbjct: 59 QLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSF 109
Query: 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM 211
N +P+ L L +L L N P LE+L +++NQLT E+P +
Sbjct: 110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 212 ATGCFSLKILALSNNSL 228
G +L L L NSL
Sbjct: 168 LNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
++ C+L+ L++ GTLP + + LS N+++ L + P L LD
Sbjct: 62 LDRCELTKLQV--------DGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
+S+NRL + L +L L L N +K P L ++ + L++N L+ +P+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 426 CLVN 429
L+N
Sbjct: 166 GLLN 169
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 285 GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG-TLPSCFSPAHIEQVHLS 343
G L L + + +N L+ +P+ L AL +LD+S N + L + +++++L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 KNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI 395
N+++ ++ +P L L L+ N+L ++ L L+ LLL N +
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-----------HIFSKKFNLTN 241
L+R +++ Q+ G +P L L LS+N LQ + FN
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--R 111
Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
L L L + +GE+ E LYL N L P L LE + + NN L
Sbjct: 112 LTSLPLGALRGLGELQE----------LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
L L L L NS++ T+P F +H+ + +H +P+L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF------------AFLHGNPWL 208
Query: 362 VTLDLSYNR 370
++ Y R
Sbjct: 209 CNCEILYFR 217
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSN 151
Q +L +L+ L + G P L L L++N L S + + L LDVS
Sbjct: 59 QLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSF 109
Query: 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM 211
N +P+ L L +L L N P LE+L +++NQLT E+P +
Sbjct: 110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 212 ATGCFSLKILALSNNSL 228
G +L L L NSL
Sbjct: 168 LNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
++ C+L+ L++ GTLP + + LS N+++ L + P L LD
Sbjct: 62 LDRCELTKLQV--------DGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
+S+NRL + L +L L L N +K P L ++ + L++N L+ +P+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 426 CLVN 429
L+N
Sbjct: 166 GLLN 169
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 285 GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG-TLPSCFSPAHIEQVHLS 343
G L L + + +N L+ +P+ L AL +LD+S N + L + +++++L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 KNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393
N+++ ++ +P L L L+ N+L ++ L L+ LLL N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-----------HIFSKKFNLTN 241
L+R +++ Q+ G +P L L LS+N LQ + FN
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--R 111
Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
L L L + +GE+ E LYL N L P L LE + + NN L
Sbjct: 112 LTSLPLGALRGLGELQE----------LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
L L L L NS++ T+P F +H+ + +H +P+L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF------------AFLHGNPWL 208
Query: 362 VTLDLSYNR 370
++ Y R
Sbjct: 209 CNCEILYFR 217
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 564
+P ++ + ++LS+N ++ +FSN+ Q+ +L LSYN L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 565 VFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPFLC 598
+ + N++S +P+ A S + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393
P + +++L N+ + + + +L +DLS NR+ + QL L+L++N
Sbjct: 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVY 453
++ P LK +RL+ L N++S +P N LS H A+ ++C +
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFND-LSALSHLAIGANPLYCDCNMQW 146
Query: 454 ISACLPSRSAPP 465
+S + S P
Sbjct: 147 LSDWVKSEYKEP 158
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 210 RMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGL 269
R T C L + +N +G K ++ L LDGN+F +P+ LS L +
Sbjct: 3 RCPTECTCLDTVVRCSN--KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLI 59
Query: 270 YLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
LS+N +S + N++ L + + N L P F L +L++L L N I
Sbjct: 60 DLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSN 151
Q +L +L+ L + G P L L L++N L S + + L LDVS
Sbjct: 59 QLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSF 109
Query: 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM 211
N +P+ L L +L L N P LE+L +++NQLT E+P +
Sbjct: 110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 212 ATGCFSLKILALSNNSL 228
G +L L L NSL
Sbjct: 168 LNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
++ C+L+ L++ GTLP + + LS N+++ L + P L LD
Sbjct: 62 LDRCELTKLQV--------DGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
+S+NRL + L +L L L N +K P L ++ + L++N L+ +P+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 426 CLVN 429
L+N
Sbjct: 166 GLLN 169
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 285 GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG-TLPSCFSPAHIEQVHLS 343
G L L + + +N L+ +P+ L AL +LD+S N + L + +++++L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 KNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393
N+++ ++ +P L L L+ N+L ++ L L+ LLL N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-----------HIFSKKFNLTN 241
L+R +++ Q+ G +P L L LS+N LQ + FN
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--R 111
Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
L L L + +GE+ E LYL N L P L LE + + NN L
Sbjct: 112 LTSLPLGALRGLGELQE----------LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
L L L L NS++ T+P F +H+ + +H +P+L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF------------AFLHGNPWL 208
Query: 362 VTLDLSYNR 370
++ Y R
Sbjct: 209 CNCEILYFR 217
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSN 151
Q +L +L+ L + G P L L L++N L S + + L LDVS
Sbjct: 59 QLNLDRCELTKLQVDGTLPV--------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSF 109
Query: 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM 211
N +P+ L L +L L N P LE+L +++NQLT E+P +
Sbjct: 110 NRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Query: 212 ATGCFSLKILALSNNSL 228
G +L L L NSL
Sbjct: 168 LNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
++ C+L+ L++ GTLP + + LS N+++ L + P L LD
Sbjct: 62 LDRCELTKLQV--------DGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
+S+NRL + L +L L L N +K P L ++ + L++N L+ +P+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 426 CLVN 429
L+N
Sbjct: 166 GLLN 169
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 285 GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG-TLPSCFSPAHIEQVHLS 343
G L L + + +N L+ +P+ L AL +LD+S N + L + +++++L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 344 KNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393
N+++ ++ +P L L L+ N+L ++ L L+ LLL N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-----------HIFSKKFNLTN 241
L+R +++ Q+ G +P L L LS+N LQ + FN
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--R 111
Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
L L L + +GE+ E LYL N L P L LE + + NN L
Sbjct: 112 LTSLPLGALRGLGELQE----------LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
L L L L NS++ T+P F +H+ + +H +P+L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF------------AFLHGNPWL 208
Query: 362 VTLDLSYNR 370
++ Y R
Sbjct: 209 CNCEILYFR 217
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
L N TNL L L NN + + P+ + NL L++S+N + + L L LN
Sbjct: 103 LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLN 157
Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233
N P A++ LERLDIS N+++ + +L+ L +NN +
Sbjct: 158 FG-NQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISD--I 209
Query: 234 SKKFNLTNLMRLQLDGN--KFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE 291
+ LTNL L L+GN K IG +L+ L L L++N +S P L L+ L
Sbjct: 210 TPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 263
Query: 292 GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
+++ N + P+ L+AL L+L+ N +
Sbjct: 264 ELKLGANQISNISPL--AGLTALTNLELNENQL 294
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 509 IGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
IG+L + LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISDN 201
+L TL++ +N+ IP YL L +L L N SIPS +F + L RLD+ +
Sbjct: 124 SLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181
Query: 202 QLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLS 261
+ I E G F+LK L L +++ L L L++ GN F P S
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFH 239
Query: 262 KCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL 300
L L++ ++ +S L++L + + +NNL
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 109/257 (42%), Gaps = 44/257 (17%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
L N TNL L L NN + + P+ + NL L++S+N + L GL +
Sbjct: 107 LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDI------SALSGLT--S 156
Query: 174 LSRNAFNGSIPS--SFADMKMLERLDISDNQLT------------------GEIPERMAT 213
L + +F + A++ LERLDIS N+++ +I +
Sbjct: 157 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 216
Query: 214 GCFS-LKILALSNNSLQ--GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLY 270
G + L L+L+ N L+ G + S LTNL L L N+ P LS L L
Sbjct: 217 GILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELK 270
Query: 271 LSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS 330
L N +S P L L+AL + + N LE PI L L L L N+I P
Sbjct: 271 LGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP- 325
Query: 331 CFSPAHIEQVHLSKNKI 347
S ++++ + NK+
Sbjct: 326 VSSLTKLQRLFFANNKV 342
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
L N TNL L L NN + + P+ + NL L++S+N + L GL +
Sbjct: 108 LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDI------SALSGLT--S 157
Query: 174 LSRNAFNGSIPS--SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
L + +F + A++ LERLDIS N+++ + +L+ L +NN +
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISD- 213
Query: 232 IFSKKFNLTNLMRLQLDGN--KFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSA 289
+ LTNL L L+GN K IG +L+ L L L++N +S P L L+
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTK 266
Query: 290 LEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
L +++ N + P+ L+AL L+L+ N +
Sbjct: 267 LTELKLGANQISNISPL--AGLTALTNLELNENQL 299
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 546
LTS+ + KL IG L + LN++HN + + +P FSNL + +DLSY
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 547 NLLHGKIPPQLIVLNTLEVFK 567
N + Q I +N L+ +
Sbjct: 163 NYI------QTITVNDLQFLR 177
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 546
LTS+ + KL IG L + LN++HN + + +P FSNL + +DLSY
Sbjct: 98 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Query: 547 NLLHGKIPPQLIVLNTLEVFK 567
N + Q I +N L+ +
Sbjct: 158 NYI------QTITVNDLQFLR 172
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
++ C+L+ L++ GTLP + + LS N+++ L + P L LD
Sbjct: 63 LDRCELTKLQV--------DGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLD 107
Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
+S+NRL + L +L L L N +K P L ++ + L++NNL+ +P+
Sbjct: 108 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 166
Query: 426 CLVN 429
L+N
Sbjct: 167 GLLN 170
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 239 LTNLMRLQLDGNKF--IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP 296
L N+ L L GNK I + E + YL+ L+ N L L+ L+ + +
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLI----LTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESII 355
N L+ F +L+ L L+L++N + F ++ ++ LS N+++ E +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 356 HDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
L L L N+L S+P+ + DRL L Y+ L N
Sbjct: 178 DKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
LT++ + L N+L L+ + LNL+HN L F L + LDLSYN
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPFLCGKP 601
L L L+ ++ N L +PD + ++ + NP+ C P
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDL 366
F +L+ LK L L N + F ++ ++L+ N+++ + + L LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 367 SYNRLHGSIPNRI-DRLPQLNYLLLAHNYIK 396
SYN+L S+P + D+L QL L L N +K
Sbjct: 165 SYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 98 ADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
+L++L L+G PN + + TNL L+L N L NL L++++N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
+P + L L +L+LS N F + L+ L + NQL +P+ +
Sbjct: 145 LQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFD 202
Query: 214 GCFSLKILALSNN 226
SL+ + L +N
Sbjct: 203 RLTSLQYIWLHDN 215
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
TNL L+L N L NL L + N +P + L L LNL+ N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHN 143
Query: 178 AFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
F + L LD+S NQL +PE + LK L L N L+
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 549
++ +DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
++ C+L+ L++ GTLP + + LS N+++ L + P L LD
Sbjct: 62 LDRCELTKLQV--------DGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
+S+NRL + L +L L L N +K P L ++ + L++NNL+ +P+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 426 CLVN 429
L+N
Sbjct: 166 GLLN 169
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 549
++ +DLS N++T + + + AL L+ N + +FS+L +E LDLSYN L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 178 AFNGSI--PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSK 235
+FNG I S+F ++ LE LD + L + +L L +S+ + F+
Sbjct: 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNG 144
Query: 236 KFN-LTNLMRLQLDGNKFIGE-IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
FN L++L L++ GN F +P+ ++ L L LS L P +LS+L+ +
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 294 RMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
M +NN + L++L++LD S N I
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
L +++ +DLS +L PT LS + LN+SHNN + L ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN 377
+L+ + GTLP + + LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
+ L +L L L N +K P L ++ + L++NNL+ +P+ L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN 377
+L+ + GTLP + + LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
+ L +L L L N +K P L ++ + L++NNL+ +P+ L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN 377
+L+ + GTLP + + LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
+ L +L L L N +K P L ++ + L++NNL+ +P+ L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 174 LSRNAFNGS----IPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
L+R NG+ +P+ ++ L LD+S N+LT +P + + CF LK +N +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS-CFQLKYFYFFDNMVT 306
Query: 230 GHIFSKKF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGL-YLSDNHLSGEIP 281
+F NL NL L ++GN + + L++ + G + YL DN EIP
Sbjct: 307 --TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR--PEIP 356
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 496 LSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE 540
L+ N LT E+P +I LS + L+LSHN LT ++P + Q++
Sbjct: 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 23/189 (12%)
Query: 185 SSFADMKMLERLDISDNQLTGEIPERMATGCFS----LKILALSNNSLQGHIFSKKFNLT 240
++F + L L++ NQL + ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL 300
L +L L GN+ + L L L+ N L L+ L+ + + N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 301 EGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSK------NKIEGRLESI 354
+ F +L L+ + L N F + E ++LS+ NK++
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQ--------FDCSRCETLYLSQWIRENSNKVKDGTGQN 219
Query: 355 IHDSPYLVT 363
+H+SP VT
Sbjct: 220 LHESPDGVT 228
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
++ C+L+ L++ GTLP + + LS N+++ L + P L LD
Sbjct: 62 LDRCELTKLQV--------DGTLPV------LGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
+S+NRL + L +L L L N +K P L ++ + L++N+L+ +P+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA 165
Query: 426 CLVN 429
L+N
Sbjct: 166 GLLN 169
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 44/189 (23%)
Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-----------HIFSKKFNLTN 241
L+R +++ Q+ G +P L L LS+N LQ + FN
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN--R 111
Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
L L L + +GE+ E LYL N L P L LE + + NN+L
Sbjct: 112 LTSLPLGALRGLGELQE----------LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
L L L L NS++ T+P F +H+ + +H +P+L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF------------AFLHGNPWL 208
Query: 362 VTLDLSYNR 370
++ Y R
Sbjct: 209 CNCEILYFR 217
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 516 HALNLSHNNLTGTI-PTTFSNL--KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN 572
H+L+LSHN+L T+ P+ + + SL+LS+ L ++P L L V ++ N
Sbjct: 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPA--KLRVLDLSSNR 283
Query: 573 LSGKIPDRAQFSTFEEDSYEGNPFL 597
L+ + P + + + +GNPFL
Sbjct: 284 LN-RAPQPDELPEVDNLTLDGNPFL 307
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 23/189 (12%)
Query: 185 SSFADMKMLERLDISDNQLTGEIPERMATGCFS----LKILALSNNSLQGHIFSKKFNLT 240
++F + L L++ NQL + ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL 300
L +L L GN+ + L L L+ N L L+ L+ + + N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 301 EGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSK------NKIEGRLESI 354
+ F +L L+ + L N F + E ++LS+ NK++
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQ--------FDCSRCEILYLSQWIRENSNKVKDGTGQN 219
Query: 355 IHDSPYLVT 363
+H+SP VT
Sbjct: 220 LHESPDGVT 228
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 422 HIPSCLVNTALSGGHHEAVAPTS--IWCGRASVYISACLPSRSAPPMGKEETVQ-FTTKN 478
+ C VN L G EAVA + IW G VYI + + S S P + + F T N
Sbjct: 79 EVAGCTVNR-LCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGN 137
Query: 479 MSYY 482
+ Y
Sbjct: 138 LVMY 141
>pdb|2LW4|A Chain A, Solution Nmr Structure Of Human Transcription Elongation
Factor A Protein 2, Central Domain, Northeast Structural
Genomics Consortium (Nesg) Target Hr8682b
Length = 113
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 493 GIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 552
I C +L+ +I I + ++ + N + + SNLK ++ DL N+L G
Sbjct: 32 AIGADCERLSAQIEECI--FRDVGNTDMKYKN---RVRSRISNLKDAKNPDLRRNVLCGA 86
Query: 553 IPPQLIVLNTLE 564
I PQ I + T E
Sbjct: 87 ITPQQIAVMTSE 98
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-EIPRWLGNLSALE 291
LT L L L+ N+ +P L++ L LYLS NH+S R L NL LE
Sbjct: 153 LTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISDLRALRGLKNLDVLE 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,616,922
Number of Sequences: 62578
Number of extensions: 866187
Number of successful extensions: 2446
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 512
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)