Query 046382
Match_columns 691
No_of_seqs 741 out of 5068
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.9E-62 1.1E-66 572.3 44.2 536 1-601 74-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-57 2.5E-62 535.4 42.1 517 18-602 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.1E-42 9E-47 341.1 7.6 377 168-604 79-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-39 2.5E-44 323.8 9.7 393 95-546 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.3E-41 4.9E-46 321.7 -11.3 473 65-597 41-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.6E-41 3.4E-46 322.8 -13.5 428 70-574 69-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.2E-36 4.7E-41 316.5 -2.2 483 1-573 3-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.6E-34 3.5E-39 302.5 -1.1 479 74-597 3-489 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 7.5E-34 1.6E-38 284.4 -0.2 369 142-579 7-380 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 5.9E-34 1.3E-38 285.1 -1.4 384 70-569 8-394 (1255)
11 KOG4237 Extracellular matrix p 100.0 1.6E-30 3.4E-35 247.8 -2.2 397 142-547 67-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 5.2E-24 1.1E-28 250.5 26.1 339 137-548 553-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 4.3E-23 9.3E-28 242.8 26.9 342 158-572 549-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 5.6E-27 1.2E-31 223.6 -4.9 411 147-571 51-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 3.1E-21 6.6E-26 210.3 17.2 193 193-420 203-395 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 9.3E-21 2E-25 206.5 18.1 263 169-533 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 6.9E-19 1.5E-23 193.5 13.0 14 537-550 415-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3.1E-23 190.9 12.5 117 95-229 180-296 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.6E-19 5.6E-24 183.7 3.4 38 359-396 137-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.7E-23 178.6 3.8 178 122-301 2-206 (319)
21 KOG0617 Ras suppressor protein 99.7 3.6E-19 7.7E-24 151.0 -4.2 166 327-556 25-191 (264)
22 KOG0617 Ras suppressor protein 99.6 3E-17 6.6E-22 139.3 -4.3 153 142-301 33-186 (264)
23 PLN03150 hypothetical protein; 99.6 9.6E-15 2.1E-19 160.6 11.2 118 490-607 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 2.2E-13 4.8E-18 137.3 -3.5 83 489-575 166-248 (722)
25 COG4886 Leucine-rich repeat (L 99.2 1.4E-11 3E-16 130.1 7.7 197 317-579 98-295 (394)
26 KOG1259 Nischarin, modulator o 99.2 5.2E-12 1.1E-16 117.5 1.6 86 488-576 328-414 (490)
27 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 120.7 2.7 87 216-302 246-340 (505)
28 KOG1909 Ran GTPase-activating 99.1 1.2E-11 2.6E-16 118.1 1.9 134 191-324 157-310 (382)
29 COG4886 Leucine-rich repeat (L 99.1 7.1E-11 1.5E-15 124.7 7.9 198 122-330 97-295 (394)
30 PF14580 LRR_9: Leucine-rich r 99.1 7.7E-11 1.7E-15 105.8 6.7 127 91-223 17-147 (175)
31 KOG1909 Ran GTPase-activating 99.1 1E-11 2.2E-16 118.5 0.8 247 13-276 24-310 (382)
32 KOG0532 Leucine-rich repeat (L 99.1 1.5E-12 3.3E-17 131.4 -5.0 174 359-598 75-248 (722)
33 PF14580 LRR_9: Leucine-rich r 99.1 5.7E-11 1.2E-15 106.7 5.4 107 142-253 19-126 (175)
34 KOG1259 Nischarin, modulator o 99.1 1.5E-11 3.3E-16 114.4 0.9 222 15-254 178-413 (490)
35 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 121.1 -0.1 111 116-226 119-232 (505)
36 PLN03150 hypothetical protein; 99.1 3.8E-10 8.2E-15 124.5 9.1 113 408-578 419-532 (623)
37 KOG4658 Apoptotic ATPase [Sign 99.0 4.5E-10 9.7E-15 126.4 4.9 61 139-201 568-628 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 5.1E-10 1.1E-14 82.5 3.3 59 514-572 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 6.9E-10 1.5E-14 81.8 3.8 61 489-549 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.9 1.3E-10 2.7E-15 122.8 -1.2 246 263-578 71-322 (414)
41 KOG0531 Protein phosphatase 1, 98.9 1.8E-10 3.9E-15 121.6 -0.4 241 285-596 69-317 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.8 4.9E-09 1.1E-13 118.2 7.6 272 116-396 521-807 (889)
43 KOG2120 SCF ubiquitin ligase, 98.8 3E-10 6.4E-15 106.0 -2.4 84 95-178 187-271 (419)
44 KOG1859 Leucine-rich repeat pr 98.6 1.5E-09 3.3E-14 113.0 -4.3 109 488-601 186-296 (1096)
45 KOG1859 Leucine-rich repeat pr 98.6 3.6E-10 7.8E-15 117.5 -9.8 128 94-229 165-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 4.7E-09 1E-13 98.2 -3.7 86 144-229 187-273 (419)
47 KOG4341 F-box protein containi 98.4 2.4E-08 5.2E-13 98.0 -2.5 230 47-276 140-384 (483)
48 KOG4579 Leucine-rich repeat (L 98.3 5.3E-08 1.2E-12 80.5 -2.4 110 488-601 52-163 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.3 4.7E-07 1E-11 83.9 2.5 139 138-277 88-255 (388)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.7E-07 3.8E-12 86.7 -0.3 248 13-277 24-316 (388)
51 KOG2982 Uncharacterized conser 98.2 5.7E-07 1.2E-11 84.5 2.8 226 71-296 47-287 (418)
52 KOG2982 Uncharacterized conser 98.2 3E-07 6.6E-12 86.2 0.9 212 89-301 41-262 (418)
53 KOG4341 F-box protein containi 98.1 1.2E-07 2.6E-12 93.2 -4.2 129 262-390 318-459 (483)
54 KOG4579 Leucine-rich repeat (L 98.1 2.8E-07 6E-12 76.4 -2.2 112 95-211 29-142 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 4.2E-06 9.1E-11 56.2 3.2 36 514-550 2-37 (44)
56 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.2E-10 71.1 5.8 105 166-273 41-149 (233)
57 KOG3665 ZYG-1-like serine/thre 97.9 3.6E-06 7.8E-11 92.9 1.9 149 45-197 122-281 (699)
58 PF12799 LRR_4: Leucine Rich r 97.9 9.8E-06 2.1E-10 54.4 3.0 38 489-527 1-38 (44)
59 PRK15386 type III secretion pr 97.9 3.5E-05 7.6E-10 78.3 8.2 72 334-418 51-123 (426)
60 KOG3665 ZYG-1-like serine/thre 97.9 6.3E-06 1.4E-10 91.0 2.9 106 70-178 123-231 (699)
61 PF13306 LRR_5: Leucine rich r 97.8 5.5E-05 1.2E-09 65.6 6.4 104 114-224 8-111 (129)
62 KOG1644 U2-associated snRNP A' 97.7 5.5E-05 1.2E-09 67.6 5.7 104 313-417 43-150 (233)
63 PRK15386 type III secretion pr 97.7 0.00017 3.7E-09 73.4 9.5 55 91-152 50-104 (426)
64 PF13306 LRR_5: Leucine rich r 97.5 0.0002 4.3E-09 62.1 6.5 15 186-200 30-44 (129)
65 KOG1947 Leucine rich repeat pr 97.4 3.4E-05 7.4E-10 84.1 -0.5 64 189-252 241-307 (482)
66 KOG1947 Leucine rich repeat pr 97.2 6.4E-05 1.4E-09 82.0 -1.1 191 90-290 185-389 (482)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00025 5.3E-09 66.4 2.6 57 167-223 91-150 (260)
68 KOG2739 Leucine-rich acidic nu 97.0 0.00028 6.1E-09 66.0 1.9 129 70-201 19-153 (260)
69 KOG2123 Uncharacterized conser 96.9 8.6E-05 1.9E-09 69.5 -2.7 100 93-197 19-123 (388)
70 KOG2123 Uncharacterized conser 96.8 0.00012 2.5E-09 68.7 -2.4 84 142-230 19-102 (388)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0077 1.7E-07 33.4 0.9 8 518-525 5-12 (22)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.015 3.3E-07 32.2 1.4 22 490-512 1-22 (22)
73 KOG4308 LRR-containing protein 93.4 0.0018 3.8E-08 68.8 -8.2 90 189-278 202-304 (478)
74 KOG0473 Leucine-rich repeat pr 93.0 0.0048 1E-07 56.6 -4.8 84 488-574 41-124 (326)
75 KOG4308 LRR-containing protein 93.0 0.0017 3.7E-08 68.9 -9.0 84 120-203 89-184 (478)
76 PF13504 LRR_7: Leucine rich r 92.3 0.087 1.9E-06 27.0 1.3 13 143-155 2-14 (17)
77 smart00369 LRR_TYP Leucine-ric 91.0 0.16 3.4E-06 29.4 1.7 15 537-551 2-16 (26)
78 smart00370 LRR Leucine-rich re 91.0 0.16 3.4E-06 29.4 1.7 15 537-551 2-16 (26)
79 KOG3864 Uncharacterized conser 90.6 0.038 8.2E-07 50.0 -1.9 83 119-201 102-186 (221)
80 smart00370 LRR Leucine-rich re 90.4 0.22 4.9E-06 28.8 1.9 22 512-533 1-22 (26)
81 smart00369 LRR_TYP Leucine-ric 90.4 0.22 4.9E-06 28.8 1.9 22 512-533 1-22 (26)
82 KOG0473 Leucine-rich repeat pr 90.4 0.01 2.2E-07 54.6 -5.7 88 507-596 36-123 (326)
83 KOG3864 Uncharacterized conser 90.0 0.045 9.6E-07 49.5 -2.0 82 168-249 102-185 (221)
84 PF13516 LRR_6: Leucine Rich r 86.6 0.15 3.3E-06 28.8 -0.5 14 537-550 2-15 (24)
85 TIGR00864 PCC polycystin catio 84.0 0.41 8.8E-06 60.0 0.8 39 543-604 1-39 (2740)
86 smart00365 LRR_SD22 Leucine-ri 78.9 1.6 3.5E-05 25.2 1.7 14 537-550 2-15 (26)
87 KOG4242 Predicted myosin-I-bin 75.0 23 0.00049 37.0 9.6 59 361-419 415-480 (553)
88 KOG4242 Predicted myosin-I-bin 71.1 17 0.00038 37.8 7.8 108 289-396 355-481 (553)
89 smart00368 LRR_RI Leucine rich 65.6 4.7 0.0001 23.8 1.6 14 537-550 2-15 (28)
90 smart00364 LRR_BAC Leucine-ric 62.7 4.9 0.00011 23.2 1.2 18 142-160 2-19 (26)
91 smart00367 LRR_CC Leucine-rich 59.1 3.8 8.2E-05 23.6 0.4 13 18-30 1-13 (26)
92 PF08693 SKG6: Transmembrane a 56.9 9 0.0002 24.8 1.8 6 655-660 33-38 (40)
93 KOG3763 mRNA export factor TAP 52.0 7.8 0.00017 41.2 1.5 63 488-550 217-283 (585)
94 PF15050 SCIMP: SCIMP protein 51.6 2.4 5.2E-05 34.4 -1.7 39 646-688 21-59 (133)
95 smart00082 LRRCT Leucine rich 48.9 6.9 0.00015 26.9 0.4 11 594-604 1-11 (51)
96 KOG3763 mRNA export factor TAP 42.7 13 0.00028 39.5 1.5 16 16-31 215-230 (585)
97 TIGR01478 STEVOR variant surfa 38.7 13 0.00029 35.7 0.8 27 636-662 262-288 (295)
98 PF02009 Rifin_STEVOR: Rifin/s 38.3 12 0.00025 37.2 0.3 20 640-659 264-283 (299)
99 PF15102 TMEM154: TMEM154 prot 36.8 9.6 0.00021 32.8 -0.5 7 653-659 80-86 (146)
100 PTZ00370 STEVOR; Provisional 35.7 17 0.00038 35.1 1.0 27 636-662 258-284 (296)
101 TIGR00864 PCC polycystin catio 35.0 24 0.00051 45.5 2.2 32 495-526 1-32 (2740)
102 PF08114 PMP1_2: ATPase proteo 33.6 63 0.0014 20.9 2.8 6 655-660 30-35 (43)
103 PF01102 Glycophorin_A: Glycop 32.4 14 0.00031 31.0 -0.1 8 640-647 72-79 (122)
104 PF08374 Protocadherin: Protoc 31.9 50 0.0011 30.5 3.2 21 634-654 40-60 (221)
105 PF04478 Mid2: Mid2 like cell 26.8 21 0.00047 30.9 0.0 12 633-644 52-63 (154)
106 PHA03099 epidermal growth fact 23.5 25 0.00054 29.3 -0.2 27 639-665 107-133 (139)
107 PF13908 Shisa: Wnt and FGF in 22.1 1.2E+02 0.0025 27.7 3.9 8 600-607 33-40 (179)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.9e-62 Score=572.31 Aligned_cols=536 Identities=34% Similarity=0.468 Sum_probs=470.0
Q ss_pred Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382 1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79 (691)
Q Consensus 1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 79 (691)
|+|++|.++.. +..+..+++|++|+|++|+ ..+..+...+.++++|++|+++++..... ++ .....+|++|++++|
T Consensus 74 L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p-~~~l~~L~~L~Ls~n 150 (968)
T PLN00113 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGS-IP-RGSIPNLETLDLSNN 150 (968)
T ss_pred EEecCCCccccCChHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccc-cC-ccccCCCCEEECcCC
Confidence 46777777654 6788899999999999998 55555544556889999999988544211 11 123458999999999
Q ss_pred CCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCc
Q 046382 80 IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIP 159 (691)
Q Consensus 80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 159 (691)
.+.+..|..++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|.+++.+|
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 9988889889999999999999999887888774 889999999999999988888889999999999999999988888
Q ss_pred hhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCC
Q 046382 160 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNL 239 (691)
Q Consensus 160 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 239 (691)
..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..+..+.++
T Consensus 230 ~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 230 YEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred hhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCC
Confidence 87765 7899999999999988889999999999999999999987787776 468899999999999988888888889
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEc
Q 046382 240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDL 319 (691)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 319 (691)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 99999999999998888888899999999999999998888988999999999999999998888888888899999999
Q ss_pred cCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc
Q 046382 320 SNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE 398 (691)
Q Consensus 320 ~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 398 (691)
++|.+.+..+..+ .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 9999887777655 678999999999999888888889999999999999999988888888899999999999999888
Q ss_pred CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382 399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN 478 (691)
Q Consensus 399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (691)
.|..+ ..++|+.|++++|++++.+|..+..
T Consensus 468 ~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~------------------------------------------------- 497 (968)
T PLN00113 468 LPDSF-GSKRLENLDLSRNQFSGAVPRKLGS------------------------------------------------- 497 (968)
T ss_pred cCccc-ccccceEEECcCCccCCccChhhhh-------------------------------------------------
Confidence 77665 4588999999999998877776543
Q ss_pred ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccc
Q 046382 479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 558 (691)
Q Consensus 479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 558 (691)
+++|++|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|||++|++++.+|..+.
T Consensus 498 ---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 498 ---------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred ---------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCC
Q 046382 559 VLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 559 ~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
.+++|+.+++++|++++.+|..+++.++....+.|||.+|+.+
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-57 Score=535.37 Aligned_cols=517 Identities=29% Similarity=0.450 Sum_probs=448.1
Q ss_pred CCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccc---cccccCCCCCccccEEEecCCCCCCCcchhhcCCCC
Q 046382 18 LISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAET---ESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHD 94 (691)
Q Consensus 18 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 94 (691)
..+++.|+|++|. ..+..+ ..+..+++|+.|+++++... |..+ +..+.+|++|++++|.+++..|. +.+++
T Consensus 68 ~~~v~~L~L~~~~-i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 68 SSRVVSIDLSGKN-ISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDI--FTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CCcEEEEEecCCC-ccccCC-hHHhCCCCCCEEECCCCccCCcCChHH--hccCCCCCEEECcCCccccccCc--cccCC
Confidence 3578899999988 444443 56888999999999985432 2222 22555899999999988877664 45788
Q ss_pred CCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEc
Q 046382 95 LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL 174 (691)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L 174 (691)
|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+.++++|++|++++|.+++.+|..+.. +++|++|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L 219 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYL 219 (968)
T ss_pred CCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEEC
Confidence 9999999999887888774 88999999999999988888888899999999999999988788877765 789999999
Q ss_pred cCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcc
Q 046382 175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIG 254 (691)
Q Consensus 175 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 254 (691)
++|.+.+.+|..++++++|++|++++|.+++.+|..+ ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 9999988889899999999999999999887777765 678999999999999988888888889999999999999888
Q ss_pred cCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-C
Q 046382 255 EIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-S 333 (691)
Q Consensus 255 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~ 333 (691)
..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ .
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 888888889999999999999988888889999999999999999988888888889999999999999887776655 6
Q ss_pred CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEE
Q 046382 334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413 (691)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 413 (691)
.++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..++.|+.|++++|++++..+..+..+++|+.|+
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 78899999999999888888888899999999999999888888888999999999999999988888888889999999
Q ss_pred ccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccce
Q 046382 414 LSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSG 493 (691)
Q Consensus 414 l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 493 (691)
+++|++.+.+|..+. .++|+.
T Consensus 459 L~~n~~~~~~p~~~~-----------------------------------------------------------~~~L~~ 479 (968)
T PLN00113 459 LARNKFFGGLPDSFG-----------------------------------------------------------SKRLEN 479 (968)
T ss_pred CcCceeeeecCcccc-----------------------------------------------------------cccceE
Confidence 999988876665321 367999
Q ss_pred EEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcc
Q 046382 494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 573 (691)
Q Consensus 494 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 573 (691)
||+++|++++..|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++
T Consensus 480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-CCCCCCcCcCcccCCCCCCCCCC
Q 046382 574 SGKIPD-RAQFSTFEEDSYEGNPFLCGKPL 602 (691)
Q Consensus 574 ~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l 602 (691)
++.+|. ...+..++.+++++|++.+..|.
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 999987 45677889999999999886663
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-42 Score=341.07 Aligned_cols=377 Identities=22% Similarity=0.226 Sum_probs=276.1
Q ss_pred CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382 168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247 (691)
Q Consensus 168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 247 (691)
.-+.|++++|++..+.+..|.++++|+++++..|.++ .+|... ....+|+.|+|.+|.|+....+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3455666666666666666666666666666666666 566533 23344666666666666666666666666666666
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCccc
Q 046382 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGT 327 (691)
Q Consensus 248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 327 (691)
+.|.++......|..-.++++|+|++|.|+......|..+.+|.+|.++.|+++...+..|..+++|+.|+|..|+|...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 66666654445555556677777777777666666666777777777777777766666677777777777777777644
Q ss_pred CCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCC
Q 046382 328 LPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 406 (691)
Q Consensus 328 ~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 406 (691)
-...| ++++|+.|.+..|.|.....+.|..+.++++|+|+.|++...-..|+.+++.|+.|++++|.|..+-++....+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 23333 67777777777777777777788888888888888888887777788888888888888888887777788888
Q ss_pred CCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccc
Q 046382 407 KEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGR 486 (691)
Q Consensus 407 ~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (691)
++|++|+|++|+|+...+..+..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~--------------------------------------------------------- 339 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRV--------------------------------------------------------- 339 (873)
T ss_pred ccceeEeccccccccCChhHHHH---------------------------------------------------------
Confidence 88888888888887544444433
Q ss_pred cccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccc---hhhcCCCcCCEEeCCCccccccCCcccccCCCC
Q 046382 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563 (691)
Q Consensus 487 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 563 (691)
+..|++|+|++|++...-...|..+++|++|||++|.|+..+. ..|.+|++|+.|++.+|++..+...+|..++.|
T Consensus 340 -L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 340 -LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred -HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 5678888888888887777788888889999999998876554 347788899999999999987777888889999
Q ss_pred CeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCC
Q 046382 564 EVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604 (691)
Q Consensus 564 ~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~ 604 (691)
+.|||.+|.|...-|.......++++.+.--.++|+|.+.|
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred ceecCCCCcceeecccccccchhhhhhhcccceEEeccHHH
Confidence 99999999887766664333367777787788999998876
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=323.78 Aligned_cols=393 Identities=23% Similarity=0.238 Sum_probs=306.6
Q ss_pred CCEEEccCCCCcccCchHHhhc-CCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEE
Q 046382 95 LKNADLSHLNLSGQFPNWLLEN-NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173 (691)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ 173 (691)
-+.||.++..+...--..+-+- .+.-+.|++++|++....+..|.++++|+++++.+|.++ .+|..... ..+|+.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEe
Confidence 4567777777652110010011 234567999999998888888889999999999999988 88865543 56799999
Q ss_pred ccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCc
Q 046382 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI 253 (691)
Q Consensus 174 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 253 (691)
|.+|.|+.+-.+.++.++.|++|||+.|.|+ ++|...|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 9999998888888888999999999999988 888877766678999999999998888888888888999999999988
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCC-C
Q 046382 254 GEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSC-F 332 (691)
Q Consensus 254 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~ 332 (691)
...+..|..+++|+.|+|..|++.-.---.|.++++|+.|.+..|.+.......|..+.++++|+|+.|++...-..+ |
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 777778888889999999988886444556788888888888888888777778888888888888888887665554 4
Q ss_pred CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEE
Q 046382 333 SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412 (691)
Q Consensus 333 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 412 (691)
+++.|++|++++|.|..+.+..+..+++|++|+|++|+|+...+..|..+..|++|+|++|.+...-...|..+++|++|
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 78888888888888888888888888888888888888887777788888888888888888876666778888888888
Q ss_pred EccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccc
Q 046382 413 DLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS 492 (691)
Q Consensus 413 ~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 492 (691)
||++|.+++.+.+.-. .|.| +++|+
T Consensus 371 dLr~N~ls~~IEDaa~-----------------------------------------------------~f~g--l~~Lr 395 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAV-----------------------------------------------------AFNG--LPSLR 395 (873)
T ss_pred cCcCCeEEEEEecchh-----------------------------------------------------hhcc--chhhh
Confidence 8888888754443111 1222 67777
Q ss_pred eEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382 493 GIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546 (691)
Q Consensus 493 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 546 (691)
.|++.+|++.......|.++.+|++|||.+|.|..+.|.+|..+ .|++|.++.
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 78888888775555677777778888888887777777777777 777776654
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-41 Score=321.70 Aligned_cols=473 Identities=27% Similarity=0.345 Sum_probs=330.4
Q ss_pred CCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCcc
Q 046382 65 LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNL 144 (691)
Q Consensus 65 ~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 144 (691)
++....++.+.++.|.+.. +...+.++..|.+|++++|+++ .+|+++ +.+..++.|+.++|++ ...|..+..+.+|
T Consensus 41 wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~l-s~lp~~i~s~~~l 116 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKL-SELPEQIGSLISL 116 (565)
T ss_pred hhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchH-hhccHHHhhhhhh
Confidence 4444477888888887763 3445778888889999998887 777775 7888888889998887 5667778888889
Q ss_pred CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcc
Q 046382 145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALS 224 (691)
Q Consensus 145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 224 (691)
+.++.++|.+. ++|..++. +-.++.++..+|++. ..|+.+..+.+|..+++.+|++. ..|..... ++.|++|+..
T Consensus 117 ~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN 191 (565)
T ss_pred hhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc
Confidence 99999999888 88888887 568888888888888 67888888888888999999888 66666654 8888899988
Q ss_pred cccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCc
Q 046382 225 NNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPI 304 (691)
Q Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 304 (691)
.|.++ ..|..++.+.+|..|++..|++. ..| .|..|..|++++++.|.+.-...+...+++++..||+++|+++ ..
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence 88887 45677888888888899998887 566 6888888899998888887433344447888889999999888 67
Q ss_pred chhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCC-----CCCccE----EeccCCC-----
Q 046382 305 PIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD-----SPYLVT----LDLSYNR----- 370 (691)
Q Consensus 305 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-----~~~L~~----L~ls~n~----- 370 (691)
|..++.+.+|+.||+++|.|++..+....+ +|+.|-+.+|.+..+-...+.. ++.|+. =-++...
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 888888888889999999888766666666 8888888888775332211111 011111 0001000
Q ss_pred ----CCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCC---CCEEEccCCCCCCCCChhhhhcc-------ccCCC
Q 046382 371 ----LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE---VRLIDLSHNNLSGHIPSCLVNTA-------LSGGH 436 (691)
Q Consensus 371 ----i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~l~~n~l~~~~p~~~~~~~-------l~~~~ 436 (691)
..+..| ....+.+.+.|++++-+++ .+|+....-.. .+.++++.|++. ++|..+.... +..+.
T Consensus 347 ~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 347 AMTLPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred cCCCCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence 000011 1122344555666665555 23322221112 455566666654 4444332211 00000
Q ss_pred CcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCC
Q 046382 437 HEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIH 516 (691)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 516 (691)
...+ . .....+++|+.|+|++|.+. .+|..++.+..|+
T Consensus 424 isfv-----------------------------------~------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq 461 (565)
T KOG0472|consen 424 ISFV-----------------------------------P------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQ 461 (565)
T ss_pred cccc-----------------------------------h------HHHHhhhcceeeecccchhh-hcchhhhhhhhhh
Confidence 0000 0 00011577888888888887 7788888888888
Q ss_pred eEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCC
Q 046382 517 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPF 596 (691)
Q Consensus 517 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~ 596 (691)
+||+|+|++. .+|..+..+..++.+-.++|++....|+.+.++.+|..||+.+|.+....|..+.+.+++.+.++|||+
T Consensus 462 ~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 462 TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 8888888887 678877777778877777788886667678888888888888888887777778888888888888887
Q ss_pred C
Q 046382 597 L 597 (691)
Q Consensus 597 ~ 597 (691)
.
T Consensus 541 r 541 (565)
T KOG0472|consen 541 R 541 (565)
T ss_pred C
Confidence 5
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=322.75 Aligned_cols=428 Identities=26% Similarity=0.375 Sum_probs=266.6
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 149 (691)
.+.+|+++++.+. ..|++++.+..++.++.++|++. .+|+.+ ..+.+|+.|+.++|.+. ..+..++.+..|..++.
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 4444444444443 34444555555555555555554 455543 45555555555555542 23334455555555555
Q ss_pred cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229 (691)
Q Consensus 150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 229 (691)
.+|+++ ..|.+++. +.++..+++.+|+++...|..+ .++.|++||..+|.+. .+|..+ +++.+|..|++.+|++.
T Consensus 145 ~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR 219 (565)
T ss_pred cccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc
Confidence 555555 55555444 3455555555555553222222 2555555555555554 555554 34555555555555554
Q ss_pred ccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhc
Q 046382 230 GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309 (691)
Q Consensus 230 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 309 (691)
.. | .|.++..|++++++.|.+.....+...+++++..||+.+|++. ..|+.+.-+.+|+.||+++|.++ ..|..++
T Consensus 220 ~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 220 FL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred cC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence 22 2 4445555555555555554222222335555555555555554 44455555555555555555555 3444455
Q ss_pred CCCCCCEEEccCCcCcc------------------------------------------cCCCCCCCCcccEEEccCCcc
Q 046382 310 QLSALKILDLSNNSIFG------------------------------------------TLPSCFSPAHIEQVHLSKNKI 347 (691)
Q Consensus 310 ~l~~L~~L~L~~n~i~~------------------------------------------~~~~~~~~~~L~~L~l~~n~i 347 (691)
++ +|+.|-+.+|++.. ..+......+.+.|++++-++
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 55 55555555554321 011111234677788888777
Q ss_pred ccccccccCCCC--CccEEeccCCCCCCCcchhhcCCCCccE-EecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCC
Q 046382 348 EGRLESIIHDSP--YLVTLDLSYNRLHGSIPNRIDRLPQLNY-LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP 424 (691)
Q Consensus 348 ~~~~~~~~~~~~--~L~~L~ls~n~i~~~~~~~~~~l~~L~~-L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 424 (691)
+..+...|.... -.+..+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcc
Confidence 766665554432 3778899999888 67776666655554 44555555 478888999999999999999886 566
Q ss_pred hhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeec
Q 046382 425 SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 504 (691)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 504 (691)
..++. +..|+.||+|+|++. .
T Consensus 452 ~e~~~----------------------------------------------------------lv~Lq~LnlS~NrFr-~ 472 (565)
T KOG0472|consen 452 EEMGS----------------------------------------------------------LVRLQTLNLSFNRFR-M 472 (565)
T ss_pred hhhhh----------------------------------------------------------hhhhheecccccccc-c
Confidence 65443 456999999999999 8
Q ss_pred cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc
Q 046382 505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574 (691)
Q Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 574 (691)
.|.....+..++.+-.++|++....|+.+.+|.+|.+|||.+|.+. .+|..++++++|++|+++||+++
T Consensus 473 lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 473 LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999999999999999888888999999999999999998 77889999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-36 Score=316.51 Aligned_cols=483 Identities=23% Similarity=0.293 Sum_probs=373.8
Q ss_pred CcccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCC
Q 046382 1 MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYI 80 (691)
Q Consensus 1 l~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 80 (691)
+|.+...++-+|..+..-..++.|+++.|-+...| .+...+.-+|+.||+++....+.... +....+|+.|+++.|-
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhh
Confidence 46778888999988888888999999999754444 45566666688888888544332221 2334488888888877
Q ss_pred CCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCch
Q 046382 81 DGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPV 160 (691)
Q Consensus 81 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 160 (691)
+. ..|....++.+|+++.|.+|.+. .+|..+ ..+++|++|++++|++ +..|..+..+..+..+..++|.....++
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg- 154 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLG- 154 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhc-
Confidence 65 45677778888888888888776 777775 7888888888888887 5566677777888888888882211222
Q ss_pred hhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCC
Q 046382 161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLT 240 (691)
Q Consensus 161 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 240 (691)
+ ..++.+++..|.+.+.++..+..++. .|++..|.+. .+. ...+++|+.+....|++..... .-+
T Consensus 155 ---~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~ 219 (1081)
T KOG0618|consen 155 ---Q--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGP 219 (1081)
T ss_pred ---c--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCc
Confidence 1 23778888888888777777777766 7999999876 332 2558889999999888875332 357
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEcc
Q 046382 241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLS 320 (691)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 320 (691)
+|+.|+.++|.+....+. ....+|+.++++.|+++ ..|+|++.+.+|+.++..+|.+. .+|..+....+|+.|.+.
T Consensus 220 ~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 899999999998854443 23458999999999998 56699999999999999999996 778888889999999999
Q ss_pred CCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCC-ccEEeccCCCCCCCcch-hhcCCCCccEEecccCcCccc
Q 046382 321 NNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPY-LVTLDLSYNRLHGSIPN-RIDRLPQLNYLLLAHNYIKGE 398 (691)
Q Consensus 321 ~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~ 398 (691)
.|.+....+......+|+.|++..|++...++..+..... |..|+.+.|++.. .|. .=..++.|+.|++.+|.+++.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCccccc
Confidence 9999866666557899999999999998776655655554 8888888888873 332 223467899999999999987
Q ss_pred CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382 399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN 478 (691)
Q Consensus 399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (691)
.-..+.++.+|+.|+|++|++. .+|.....
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~------------------------------------------------- 404 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLN-SFPASKLR------------------------------------------------- 404 (1081)
T ss_pred chhhhccccceeeeeecccccc-cCCHHHHh-------------------------------------------------
Confidence 7778889999999999999996 56653321
Q ss_pred ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccC-Cccc
Q 046382 479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQL 557 (691)
Q Consensus 479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l 557 (691)
.+..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+++... |...
T Consensus 405 --------kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 405 --------KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred --------chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 1678999999999999 88899999999999999999998 667 6889999999999999997543 3333
Q ss_pred ccCCCCCeEEccCCcc
Q 046382 558 IVLNTLEVFKVAYNNL 573 (691)
Q Consensus 558 ~~l~~L~~L~l~~N~l 573 (691)
. -++|++||++||.-
T Consensus 474 p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 P-SPNLKYLDLSGNTR 488 (1081)
T ss_pred C-CcccceeeccCCcc
Confidence 3 38999999999973
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.6e-34 Score=302.54 Aligned_cols=479 Identities=26% Similarity=0.314 Sum_probs=359.6
Q ss_pred EEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCc
Q 046382 74 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153 (691)
Q Consensus 74 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 153 (691)
+|++++.+. .+|..+..-..++.|+++.|.+- ..|-.+..+.-+|+.|++++|++ +..|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhh
Confidence 455556554 34555555455888899888765 44444445666799999999987 6778889999999999999999
Q ss_pred CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCc
Q 046382 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233 (691)
Q Consensus 154 i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 233 (691)
|. .+|..... +.+|+++.|.+|... ..|..+..+++|+.|+++.|.+. .+|..+ ..+..+..+..++|...
T Consensus 80 i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~---- 150 (1081)
T KOG0618|consen 80 IR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKI---- 150 (1081)
T ss_pred Hh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhh----
Confidence 98 88866665 789999999999887 78999999999999999999998 888877 46888999999999221
Q ss_pred ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCC
Q 046382 234 SKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313 (691)
Q Consensus 234 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 313 (691)
..++.. .++.+++..|.+.+.++..+..+.. .|++.+|.+. ...+..+..|+.+....|++.... -.-++
T Consensus 151 ~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~ 220 (1081)
T KOG0618|consen 151 QRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPS 220 (1081)
T ss_pred hhhccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcc
Confidence 112222 2888899999888888777776666 7999999986 234677889999999999887432 23568
Q ss_pred CCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC
Q 046382 314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393 (691)
Q Consensus 314 L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n 393 (691)
++.|+.+.|.+. .....+.+.+|++++++.|++++.+ .++..+.+|+.+++.+|+++ ..|..+...++|+.|.+..|
T Consensus 221 l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 221 LTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred hheeeeccCcce-eeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhh
Confidence 999999999998 5555667899999999999999766 89999999999999999997 78888889999999999999
Q ss_pred cCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhcccc-----CCCCcccCCCcccccCcccccccccCCCCCCCCCC
Q 046382 394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALS-----GGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK 468 (691)
Q Consensus 394 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (691)
.+. -+|....+++.|++|++..|++. ..|..+...... +.....+.. .|.-.......
T Consensus 298 el~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~---------------lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 298 ELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST---------------LPSYEENNHAA 360 (1081)
T ss_pred hhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc---------------cccccchhhHH
Confidence 998 56667788999999999999996 566543321100 000000000 00000000000
Q ss_pred cccEEEEecCccc--eeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382 469 EETVQFTTKNMSY--YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546 (691)
Q Consensus 469 ~~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 546 (691)
...+.+.++.+.. +.......+|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|...+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 1111111111111 111122678999999999998555566888999999999999998 6788899999999999999
Q ss_pred ccccccCCcccccCCCCCeEEccCCcccccC-CCCCCCCCcCcCcccCCCCC
Q 046382 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKI-PDRAQFSTFEEDSYEGNPFL 597 (691)
Q Consensus 547 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~~~~~~~~~~~Np~~ 597 (691)
|++. ..| .+..++.|+.+|++.|+++... |.....++++.++++||+|.
T Consensus 440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 9998 666 7889999999999999998653 33333489999999999974
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.5e-34 Score=284.38 Aligned_cols=369 Identities=26% Similarity=0.364 Sum_probs=258.4
Q ss_pred CccCEEEccCCcCc-ccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCE
Q 046382 142 QNLATLDVSNNFFH-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKI 220 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 220 (691)
|-.+-.|+++|.++ +.+|..+-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence 44455666666665 345555544 566666666666665 56666666666666666666665 444444 44666666
Q ss_pred EEcccccCCc-cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCc
Q 046382 221 LALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN 299 (691)
Q Consensus 221 L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 299 (691)
+.+..|++.. -+|..+..+..|..|||++|++. ..|..+....++-.|++++|.|..+....+.+++.|-.|++++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 6666666542 24455566677777777777765 556666666667777777777765544555666677777777777
Q ss_pred cCCCcchhhcCCCCCCEEEccCCcCccc-CCCCCCCCcccEEEccCCccc-cccccccCCCCCccEEeccCCCCCCCcch
Q 046382 300 LEGPIPIEFCQLSALKILDLSNNSIFGT-LPSCFSPAHIEQVHLSKNKIE-GRLESIIHDSPYLVTLDLSYNRLHGSIPN 377 (691)
Q Consensus 300 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~ 377 (691)
+. .+|.....+..|++|+|++|++... ......+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 76 4555566667777777777765421 122224566677777765432 345677788888888888888888 7888
Q ss_pred hhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccc
Q 046382 378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC 457 (691)
Q Consensus 378 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (691)
.+..+++|+.|+|++|+|+ ...-......+|++|++|.|+++ .+|.++..
T Consensus 240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------------------------- 289 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------------------------- 289 (1255)
T ss_pred HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------------------------
Confidence 8888888888888888887 44445556678888888888887 77777665
Q ss_pred cCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee-ccchhhhcccCCCeEeCCCCcCCcccchhhcCC
Q 046382 458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL 536 (691)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 536 (691)
++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. ..|+++..+
T Consensus 290 ------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC 338 (1255)
T KOG0444|consen 290 ------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC 338 (1255)
T ss_pred ------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence 5778888888888763 46888888888888888888887 788888888
Q ss_pred CcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382 537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 579 (691)
..|+.|.|++|++. .+|+.+.-++.|++||++.|+=-...|.
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 88888888888887 6788888888888888888875555554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.9e-34 Score=285.08 Aligned_cols=384 Identities=25% Similarity=0.297 Sum_probs=249.3
Q ss_pred cccEEEecCCCCC-CCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEE
Q 046382 70 QLTSISLSGYIDG-GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLD 148 (691)
Q Consensus 70 ~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 148 (691)
-++-.|+++|.++ +.+|..+..+++++.|.|...++. .+|+.+ +.+.+|++|.+++|++.... ..+..+|.|+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHh
Confidence 4677888999988 568999999999999999999987 889886 89999999999999985544 4578899999999
Q ss_pred ccCCcCc-ccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccccc
Q 046382 149 VSNNFFH-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS 227 (691)
Q Consensus 149 Ls~n~i~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 227 (691)
+.+|++. .-+|..++. +..|+.|||++|+++ ..|..+...+++-.|+||+|.|. .||..+|.++..|-.|+|++|+
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 9999765 357888887 789999999999998 78888988899999999999998 8999888888888888888888
Q ss_pred CCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchh
Q 046382 228 LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307 (691)
Q Consensus 228 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 307 (691)
+.. .|.....+.+|++|+|++|.+....-..+..+++|+.|.+++.+-+ ...+|.+
T Consensus 162 Le~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-----------------------l~N~Pts 217 (1255)
T KOG0444|consen 162 LEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-----------------------LDNIPTS 217 (1255)
T ss_pred hhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----------------------hhcCCCc
Confidence 774 3445556667777777777655333233333444444444443221 1223444
Q ss_pred hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccE
Q 046382 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNY 387 (691)
Q Consensus 308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 387 (691)
+..+.+|..+|+|.|.+...+...+.+++|+.|++++|+|+... .......+|++|++|.|+++ ..|+.+..++.|+.
T Consensus 218 ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 45555555555555554422222223344444444444443221 11223345555555555555 45555555555555
Q ss_pred EecccCcCc-ccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCC
Q 046382 388 LLLAHNYIK-GEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPM 466 (691)
Q Consensus 388 L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (691)
|++.+|+++ +-+|..++.+.+|+++
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf------------------------------------------------------ 321 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVF------------------------------------------------------ 321 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHH------------------------------------------------------
Confidence 555555543 1234444444444444
Q ss_pred CCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382 467 GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546 (691)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 546 (691)
..++|.+. .+|+.+..+..|+.|.|++|++. .+|+++.-++.|+.||+..
T Consensus 322 ----------------------------~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 322 ----------------------------HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred ----------------------------Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccC
Confidence 44444444 66667777777777777777776 5677777777777777777
Q ss_pred ccccccCCcccccCCCCCeEEcc
Q 046382 547 NLLHGKIPPQLIVLNTLEVFKVA 569 (691)
Q Consensus 547 N~l~~~~p~~l~~l~~L~~L~l~ 569 (691)
|.-.-..|.--..-++|+.-++.
T Consensus 372 NpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 372 NPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CcCccCCCCcchhhhcceeeecc
Confidence 76543333222222345544443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-30 Score=247.76 Aligned_cols=397 Identities=23% Similarity=0.259 Sum_probs=218.3
Q ss_pred CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccc-cccccccchhHhhcCCCCCE
Q 046382 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISD-NQLTGEIPERMATGCFSLKI 220 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~ 220 (691)
+.-+.++|..|+|+ .+|...|+.+++|+.|||++|.|+.+.|.+|.++++|.+|-+.+ |+|+ .+|...|.++..|+.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 34555666666666 66666666666666666666666666666666666666555554 6666 666666666666666
Q ss_pred EEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCC------------cchhhhhcCC
Q 046382 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG------------EIPRWLGNLS 288 (691)
Q Consensus 221 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~ 288 (691)
|.+.-|++.......+..+++|..|.+.+|.+...-...|..+..++.+.+..|++.. ..|..++...
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 6666666666666666666666666666666654433456666666666666655211 1111222222
Q ss_pred CCCEEecCCCccCCCcchhhcCC-CCCCEEEccCCcCcccCC-CCC-CCCcccEEEccCCccccccccccCCCCCccEEe
Q 046382 289 ALEGIRMPNNNLEGPIPIEFCQL-SALKILDLSNNSIFGTLP-SCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365 (691)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~-~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 365 (691)
-.....+.+.++..+.+..|... ..+.+=-.+.+...+..| ..| .+++|++|++++|+++.+.+.+|.+...+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 22222233333332222222111 111110111121221211 223 567777777777777777777777777777777
Q ss_pred ccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC-----------------CCCChhhh
Q 046382 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS-----------------GHIPSCLV 428 (691)
Q Consensus 366 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-----------------~~~p~~~~ 428 (691)
|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++. ...|.|-.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~ 384 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQS 384 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCC
Confidence 7777776555556777777777777777777777777777777777777766654 12333433
Q ss_pred hccccCCCCcccCCCcccccCcccccccccCCCCCCCCC--CcccEEEEecCccceeccccccccceEEcCCCeeeeccc
Q 046382 429 NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG--KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP 506 (691)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 506 (691)
...+.+.....+..+.+.|... .-.+|.++...++.+ ....+.+..+... .+..+++..-++|++.+|.++ .+|
T Consensus 385 p~~~~~~~~~dv~~~~~~c~~~--ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~d~telyl~gn~~~-~vp 460 (498)
T KOG4237|consen 385 PGFVRQIPISDVAFGDFRCGGP--EELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPVDVTELYLDGNAIT-SVP 460 (498)
T ss_pred CchhccccchhccccccccCCc--cccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCCchhHHHhcccchhc-ccC
Confidence 3334444455555566666521 222333333322221 1222333333322 233344555666666666666 455
Q ss_pred hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc
Q 046382 507 TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547 (691)
Q Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 547 (691)
.. .+.+| .+|+|+|+|.......|.++++|.+|-||+|
T Consensus 461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 44 45555 6666666666555555666666666666554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=5.2e-24 Score=250.49 Aligned_cols=339 Identities=22% Similarity=0.257 Sum_probs=201.5
Q ss_pred CccCCCccCEEEccCCc------CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchh
Q 046382 137 PIHSHQNLATLDVSNNF------FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPER 210 (691)
Q Consensus 137 ~l~~l~~L~~L~Ls~n~------i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 210 (691)
+|.++++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|++|++.+|.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 34555555555554332 112344444332334566666555554 444444 3455666666666555 44444
Q ss_pred HhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCC
Q 046382 211 MATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290 (691)
Q Consensus 211 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 290 (691)
+ ..+++|+.|+++++......+ .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 3 345566666665543222222 24455666666666655444555556666666666666654433444433 45666
Q ss_pred CEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccc-------cccccccCCCCCccE
Q 046382 291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIE-------GRLESIIHDSPYLVT 363 (691)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~-------~~~~~~~~~~~~L~~ 363 (691)
+.|++++|......|. ...+|++|++++|.+. .+|....+++|++|.+.++... ...+.....+++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 6666666644333332 1345666666666654 3344445566666666553321 111122234567888
Q ss_pred EeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCC
Q 046382 364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPT 443 (691)
Q Consensus 364 L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~ 443 (691)
|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|.
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------------ 843 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------------ 843 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------------
Confidence 8888887766778888888888888888876544666555 678888888888765433322
Q ss_pred cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCC
Q 046382 444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHN 523 (691)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 523 (691)
..++|++|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus 844 -------------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 844 -------------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred -------------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 1357888888888887 67888888888888888885
Q ss_pred cCCcccchhhcCCCcCCEEeCCCcc
Q 046382 524 NLTGTIPTTFSNLKQIESLDLSYNL 548 (691)
Q Consensus 524 ~l~~~~p~~~~~l~~L~~L~Ls~N~ 548 (691)
+-...+|..+..+++|+.|++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 4444567777888888888888874
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.3e-23 Score=242.77 Aligned_cols=342 Identities=22% Similarity=0.248 Sum_probs=268.9
Q ss_pred CchhhhhCCCCCcEEEccCCc------ccccCchhhhCCC-CCCEEeccccccccccchhHhhcCCCCCEEEcccccCCc
Q 046382 158 IPVEIGTYLPGLMDLNLSRNA------FNGSIPSSFADMK-MLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG 230 (691)
Q Consensus 158 ~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 230 (691)
+....+..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++.+|.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 445556678999999986653 3334677777764 6999999999987 888766 47899999999999874
Q ss_pred cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcC
Q 046382 231 HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ 310 (691)
Q Consensus 231 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 310 (691)
.+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 456677899999999998875556664 7889999999999998777889999999999999999986555666655 6
Q ss_pred CCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCC-------CCcchhhcCCC
Q 046382 311 LSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH-------GSIPNRIDRLP 383 (691)
Q Consensus 311 l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~-------~~~~~~~~~l~ 383 (691)
+++|+.|++++|...+.++.. ..+|+.|++++|.++..+ ..+ .+++|+.|++.++... ...+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFP-SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccccc-ccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 889999999998765555543 568999999999987543 333 5788898888875422 11222233457
Q ss_pred CccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCC
Q 046382 384 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSA 463 (691)
Q Consensus 384 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (691)
+|+.|++++|...+.+|..+..+++|+.|++++|...+.+|...
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 89999999998877889999999999999999987655555422
Q ss_pred CCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEe
Q 046382 464 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLD 543 (691)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 543 (691)
.+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+
T Consensus 823 -----------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 823 -----------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred -----------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 1678999999998765555543 468999999999998 6788999999999999
Q ss_pred CCCccccccCCcccccCCCCCeEEccCCc
Q 046382 544 LSYNLLHGKIPPQLIVLNTLEVFKVAYNN 572 (691)
Q Consensus 544 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 572 (691)
+++|.-...+|..+..+++|+.+++++|.
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99965444677788899999999999985
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=5.6e-27 Score=223.63 Aligned_cols=411 Identities=19% Similarity=0.217 Sum_probs=289.9
Q ss_pred EEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccc-
Q 046382 147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN- 225 (691)
Q Consensus 147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~- 225 (691)
.+-++-.++ ++|..+. +.-.+++|..|+|+.+.+.+|+.+++|+.|||++|.|+ .|....|.++++|..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344444566 7887764 57889999999999999999999999999999999999 78888889999988887766
Q ss_pred ccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC---
Q 046382 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG--- 302 (691)
Q Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--- 302 (691)
|+|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+.......+..+..++.+.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 99998888899999999999999999887777889999999999999999985555588889999999998887431
Q ss_pred ---------CcchhhcCCCCCCEEEccCCcCcccCCCCCCCC--cccEEEccCCccccc-cccccCCCCCccEEeccCCC
Q 046382 303 ---------PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPA--HIEQVHLSKNKIEGR-LESIIHDSPYLVTLDLSYNR 370 (691)
Q Consensus 303 ---------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~ls~n~ 370 (691)
..|..++...-.....+.+.++....+..|.+. ++..-..+.+...++ +...|..+++|++|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 222333333334444445555554444444322 222212223333333 33468999999999999999
Q ss_pred CCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCc
Q 046382 371 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRA 450 (691)
Q Consensus 371 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (691)
++++-+.+|.....++.|.|..|++.......|.++..|+.|++.+|+|+...|..|...... ....+...++-|.+.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l--~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL--STLNLLSNPFNCNCR 363 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee--eeeehccCcccCccc
Confidence 999999999999999999999999987777889999999999999999997777766554321 122344577888888
Q ss_pred ccccccccCCCCCCCCC------CcccEEEEecCccceecc--------------ccccccc-eEEcCCCeeeeccchhh
Q 046382 451 SVYISACLPSRSAPPMG------KEETVQFTTKNMSYYYQG--------------RILTSMS-GIDLSCNKLTGEIPTQI 509 (691)
Q Consensus 451 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--------------~~l~~L~-~L~Ls~n~l~~~~~~~~ 509 (691)
..++..++......... ....+.+.......+-.+ ...+-+. ....|+..++ .+|..+
T Consensus 364 l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i 442 (498)
T KOG4237|consen 364 LAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI 442 (498)
T ss_pred hHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence 87766554322211111 111122221111111000 0011121 2234444444 333322
Q ss_pred hcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCC
Q 046382 510 GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 571 (691)
Q Consensus 510 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 571 (691)
-....+|++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.++++|.+|-+++|
T Consensus 443 --P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 443 --PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred --CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 124567889999998 66665 66778 8999999998777778888999999988886
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.1e-21 Score=210.30 Aligned_cols=193 Identities=22% Similarity=0.309 Sum_probs=90.1
Q ss_pred CCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEcc
Q 046382 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLS 272 (691)
Q Consensus 193 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 272 (691)
-..|+++++.++ .+|..+. ++|+.|++.+|+++.. |. .+++|++|++++|+++. +|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 334555555554 4444332 2445555555554432 11 13455555555555542 2321 2345555555
Q ss_pred CCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccc
Q 046382 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLE 352 (691)
Q Consensus 273 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 352 (691)
+|.+. .+|.. ..+|+.|++++|.++. +|. ..++|+.|++++|.+.+. +. .+.+|+.|++++|.+++++
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~--lp~~L~~L~Ls~N~L~~LP- 338 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA--LPSELCKLWAYNNQLTSLP- 338 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC--CcccccccccccCcccccc-
Confidence 55554 22221 1345555555555552 222 124566666666655532 22 1234555555555555322
Q ss_pred cccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382 353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420 (691)
Q Consensus 353 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 420 (691)
. ...+|+.|++++|++++ +|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|+++
T Consensus 339 ~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 339 T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred c---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 1 11355666666666652 3321 2345555666666552 3322 234556666666554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=9.3e-21 Score=206.54 Aligned_cols=263 Identities=24% Similarity=0.322 Sum_probs=155.7
Q ss_pred CcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEcc
Q 046382 169 LMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD 248 (691)
Q Consensus 169 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 248 (691)
-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++.. |. ..++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence 344555555554 3444333 24555555555555 4443 134555555555555532 21 13455566666
Q ss_pred CCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccC
Q 046382 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTL 328 (691)
Q Consensus 249 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 328 (691)
+|.+. .+|.. ...|+.|++++|+++. +|. ..++|+.|++++|.+.+. |.. ..+|+.|++++|.+.+ +
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-c
Confidence 65554 22221 2345566666666652 332 235666677777666642 321 2346667777777664 2
Q ss_pred CCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCC
Q 046382 329 PSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 408 (691)
Q Consensus 329 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 408 (691)
|. .+.+|+.|++++|+++++++ ..++|+.|++++|+++. +|.. ..+|+.|++++|++++ +|.. .++
T Consensus 338 P~--lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 338 PT--LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc--cccccceEecCCCccCCCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 32 13567778888777775432 13567788888888873 5543 3578889999998884 4433 357
Q ss_pred CCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccc
Q 046382 409 VRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRIL 488 (691)
Q Consensus 409 L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 488 (691)
|+.|++++|+++ .+|.. +
T Consensus 404 L~~LdLS~N~Ls-sIP~l-------------------------------------------------------------~ 421 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML-------------------------------------------------------------P 421 (788)
T ss_pred CCEEEccCCcCC-CCCcc-------------------------------------------------------------h
Confidence 888888888886 34431 2
Q ss_pred cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhh
Q 046382 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTF 533 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 533 (691)
.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 34667788888887 677777778888888888888877666655
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.9e-19 Score=193.47 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=6.5
Q ss_pred CcCCEEeCCCcccc
Q 046382 537 KQIESLDLSYNLLH 550 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~ 550 (691)
+.+..|++.+|+++
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 44444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=190.94 Aligned_cols=117 Identities=25% Similarity=0.420 Sum_probs=51.4
Q ss_pred CCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEc
Q 046382 95 LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL 174 (691)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L 174 (691)
...|+++++.++ .+|..+ .++|+.|++++|++... |..+. ++|++|++++|.++ .+|..+. ++|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 445555555444 344322 23455555555554322 22221 34555555555554 4444332 24455555
Q ss_pred cCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382 175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229 (691)
Q Consensus 175 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 229 (691)
++|.+. .+|..+. ++|++|++++|+++ .+|..+ .++|+.|++++|.++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIR 296 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccc
Confidence 555544 3333332 24555555555544 344332 124445555554444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.6e-19 Score=183.68 Aligned_cols=38 Identities=37% Similarity=0.418 Sum_probs=16.4
Q ss_pred CCccEEeccCCCCCCC----cchhhcCCCCccEEecccCcCc
Q 046382 359 PYLVTLDLSYNRLHGS----IPNRIDRLPQLNYLLLAHNYIK 396 (691)
Q Consensus 359 ~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 396 (691)
++|+.|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 4455555555544421 1222333444444444444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.2e-18 Score=178.65 Aligned_cols=178 Identities=24% Similarity=0.232 Sum_probs=89.0
Q ss_pred EEEccCCccc-ccCCcCccCCCccCEEEccCCcCccc----CchhhhhCCCCCcEEEccCCcccc------cCchhhhCC
Q 046382 122 MLLLANNSLF-GSFRMPIHSHQNLATLDVSNNFFHGH----IPVEIGTYLPGLMDLNLSRNAFNG------SIPSSFADM 190 (691)
Q Consensus 122 ~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l 190 (691)
.|+|.++.+. ......+..+++|++|+++++.+++. ++..+. ..+++++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4566666664 22333455566677888887776432 222222 24567777777776651 223455666
Q ss_pred CCCCEEeccccccccccchhHhhcCCC---CCEEEcccccCCccC----cccccCC-CCCCEEEccCCcCccc----CCc
Q 046382 191 KMLERLDISDNQLTGEIPERMATGCFS---LKILALSNNSLQGHI----FSKKFNL-TNLMRLQLDGNKFIGE----IPE 258 (691)
Q Consensus 191 ~~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~~~ 258 (691)
++|++|++++|.+.+..+..+ ..+.+ |++|++++|++.+.. ...+..+ ++|+.|++++|.+++. .+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 677777777776653333322 22333 666666666655211 1122333 5555555555555421 122
Q ss_pred cccCCCCCCEEEccCCcCCCc----chhhhhcCCCCCEEecCCCccC
Q 046382 259 SLSKCYLLGGLYLSDNHLSGE----IPRWLGNLSALEGIRMPNNNLE 301 (691)
Q Consensus 259 ~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 301 (691)
.+..++.|+.|++++|.+++. ++..+..+++|+.|++++|.+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 233444555555555554421 1122233344555555554443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.6e-19 Score=150.98 Aligned_cols=166 Identities=27% Similarity=0.498 Sum_probs=114.4
Q ss_pred cCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCC
Q 046382 327 TLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 406 (691)
Q Consensus 327 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 406 (691)
.++..|.+..++.|.+++|+++...| .++.+.+|+.|++++|++. ..|..++.++.|+.|+++-|++. ..|..|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 34556667778888888888875444 5677888888888888888 67777888888888888888887 778888888
Q ss_pred CCCCEEEccCCCCCC-CCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382 407 KEVRLIDLSHNNLSG-HIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG 485 (691)
Q Consensus 407 ~~L~~L~l~~n~l~~-~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (691)
+.|+.||+++|++.. .+|..|..
T Consensus 102 p~levldltynnl~e~~lpgnff~-------------------------------------------------------- 125 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFY-------------------------------------------------------- 125 (264)
T ss_pred chhhhhhccccccccccCCcchhH--------------------------------------------------------
Confidence 888888888888762 12221111
Q ss_pred ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcc
Q 046382 486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 556 (691)
Q Consensus 486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 556 (691)
++.|+-|+|++|.+. .+|..++.+++|+.|.+..|.+. ..|..++.++.|++|++.+|+++ .+|..
T Consensus 126 --m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 126 --MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred --HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChh
Confidence 455666666666665 55666666666666666666665 45666666666666666666665 44433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=139.33 Aligned_cols=153 Identities=30% Similarity=0.456 Sum_probs=74.4
Q ss_pred CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL 221 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 221 (691)
.+++.|.+|+|+++ .+|..+.. +.+|+.|++++|+|. ..|.+++.+++|+.|+++-|++. .+|.++ +.++.|+.|
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhhh
Confidence 34444444444444 44444443 344555555555444 34444444555555555544444 444443 334444444
Q ss_pred EcccccCCc-cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCcc
Q 046382 222 ALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL 300 (691)
Q Consensus 222 ~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 300 (691)
|+.+|.+.. ..|..|+.++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 444444432 23344444555555555555544 44444555555555555555544 3455555555555555555555
Q ss_pred C
Q 046382 301 E 301 (691)
Q Consensus 301 ~ 301 (691)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 4
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=9.6e-15 Score=160.62 Aligned_cols=118 Identities=33% Similarity=0.609 Sum_probs=106.2
Q ss_pred ccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382 490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 569 (691)
Q Consensus 490 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 569 (691)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|||++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC--CCCCCcCcCcccCCCCCCCCCCCCCCC
Q 046382 570 YNNLSGKIPDR--AQFSTFEEDSYEGNPFLCGKPLSKSCN 607 (691)
Q Consensus 570 ~N~l~~~~p~~--~~~~~~~~~~~~~Np~~c~~~l~~~c~ 607 (691)
+|+++|.+|.. ..+.....+++.+|+++|+++-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999983 223455677899999999876544553
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=2.2e-13 Score=137.34 Aligned_cols=83 Identities=28% Similarity=0.574 Sum_probs=41.0
Q ss_pred cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEc
Q 046382 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKV 568 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 568 (691)
+.|..||.+.|.+. .+|..++.+.+|+.|++..|++. ..|..+..| .|..||+|+|+++ .+|-.|..|..|++|.|
T Consensus 166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence 34444555555544 44445555555555555555554 233333322 2445555555554 44555555555555555
Q ss_pred cCCcccc
Q 046382 569 AYNNLSG 575 (691)
Q Consensus 569 ~~N~l~~ 575 (691)
.+|+++.
T Consensus 242 enNPLqS 248 (722)
T KOG0532|consen 242 ENNPLQS 248 (722)
T ss_pred ccCCCCC
Confidence 5555543
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.4e-11 Score=130.11 Aligned_cols=197 Identities=30% Similarity=0.473 Sum_probs=110.4
Q ss_pred EEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCC-CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcC
Q 046382 317 LDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDS-PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI 395 (691)
Q Consensus 317 L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i 395 (691)
+++..+.+..........+.++.|++.+|.++.+.+ ..... ++|+.|++++|.+. .+|..++.+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence 444444443233333333445555555555543322 22223 25666666666665 3444556666666666666666
Q ss_pred cccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEE
Q 046382 396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT 475 (691)
Q Consensus 396 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (691)
. .++......++|+.|++++|++. .+|....
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~----------------------------------------------- 206 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE----------------------------------------------- 206 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccc-cCchhhh-----------------------------------------------
Confidence 6 33333335666666666666665 3332110
Q ss_pred ecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCc
Q 046382 476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 555 (691)
Q Consensus 476 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (691)
.+..|++|++++|.+. ..+..+..+.++..+.+++|++. ..+..++.+++++.|++++|.++...+
T Consensus 207 -----------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 207 -----------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred -----------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc-
Confidence 0334666666666543 45556666667777777777766 335566667777777777777764433
Q ss_pred ccccCCCCCeEEccCCcccccCCC
Q 046382 556 QLIVLNTLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 556 ~l~~l~~L~~L~l~~N~l~~~~p~ 579 (691)
+..+.+++.|++++|.++..+|.
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccccCccCEEeccCccccccchh
Confidence 66667777777777777665554
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=5.2e-12 Score=117.49 Aligned_cols=86 Identities=28% Similarity=0.293 Sum_probs=59.6
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccC-CcccccCCCCCeE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQLIVLNTLEVF 566 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 566 (691)
+++|+.||||+|.++ .+...=..+-+.++|+|++|.|.. -.+++++-+|..||+++|+|...- -.+++++|.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 566777777777766 444444556777788888887762 245777778888888888876321 2457778888888
Q ss_pred EccCCccccc
Q 046382 567 KVAYNNLSGK 576 (691)
Q Consensus 567 ~l~~N~l~~~ 576 (691)
.+.+|++.+.
T Consensus 405 ~L~~NPl~~~ 414 (490)
T KOG1259|consen 405 RLTGNPLAGS 414 (490)
T ss_pred hhcCCCcccc
Confidence 8888888764
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.4e-11 Score=120.69 Aligned_cols=87 Identities=26% Similarity=0.219 Sum_probs=42.8
Q ss_pred CCCCEEEcccccCCccC-cccccCCCCCCEEEccCCcCcccC-Ccc-----ccCCCCCCEEEccCCcCCCc-chhhhhcC
Q 046382 216 FSLKILALSNNSLQGHI-FSKKFNLTNLMRLQLDGNKFIGEI-PES-----LSKCYLLGGLYLSDNHLSGE-IPRWLGNL 287 (691)
Q Consensus 216 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~~~~~-~~~~l~~l 287 (691)
..|+.|+|++|.+-... ....+.++.|..|+++.+.+...- |+. ...+++|+.|++..|++.+. ....+..+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL 325 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence 34445555544443211 122334555555555555544321 111 23456677777777766421 12234455
Q ss_pred CCCCEEecCCCccCC
Q 046382 288 SALEGIRMPNNNLEG 302 (691)
Q Consensus 288 ~~L~~L~l~~n~~~~ 302 (691)
++|+.|.+..|.+..
T Consensus 326 ~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 326 ENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhhcccccccc
Confidence 667777777776653
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=1.2e-11 Score=118.06 Aligned_cols=134 Identities=21% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCCCEEeccccccccccc---hhHhhcCCCCCEEEcccccCCcc----CcccccCCCCCCEEEccCCcCccc----CCcc
Q 046382 191 KMLERLDISDNQLTGEIP---ERMATGCFSLKILALSNNSLQGH----IFSKKFNLTNLMRLQLDGNKFIGE----IPES 259 (691)
Q Consensus 191 ~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 259 (691)
+.|+++....|++.+... ...+...+.|+.+.+..|.|... ....+..+++|+.|||.+|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 456666666665542111 12234445566666666555421 123344556666666666655432 1233
Q ss_pred ccCCCCCCEEEccCCcCCCcchhhh-----hcCCCCCEEecCCCccCCCc----chhhcCCCCCCEEEccCCcC
Q 046382 260 LSKCYLLGGLYLSDNHLSGEIPRWL-----GNLSALEGIRMPNNNLEGPI----PIEFCQLSALKILDLSNNSI 324 (691)
Q Consensus 260 ~~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~i 324 (691)
++.++.|+.|++++|.+.......+ ...|+|+.|.+.+|.++... .......+.|+.|+|++|++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4445555555555555543332222 12455555555555554211 11222344455555555544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=7.1e-11 Score=124.68 Aligned_cols=198 Identities=36% Similarity=0.481 Sum_probs=105.4
Q ss_pred EEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCC-CCcEEEccCCcccccCchhhhCCCCCCEEeccc
Q 046382 122 MLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISD 200 (691)
Q Consensus 122 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 200 (691)
.++++.+.+... ...+...+.++.|++.+|.++ .++..... .. +|++|++++|.+. .+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 355555544211 112333455666666666666 55554442 32 5666666666665 3444566666666666666
Q ss_pred cccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcc
Q 046382 201 NQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI 280 (691)
Q Consensus 201 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 280 (691)
|+++ .+|... ...+.|+.|++++|++... +........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus 173 N~l~-~l~~~~-~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 173 NDLS-DLPKLL-SNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred chhh-hhhhhh-hhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 6666 555433 1355666666666666532 222223344666666666432 33344555555666666666554 22
Q ss_pred hhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCC
Q 046382 281 PRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS 330 (691)
Q Consensus 281 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 330 (691)
+..++.++.++.|++++|.++.... +..+.+++.|++++|.+....+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 4455555666666666666653322 55566666666666665544433
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=7.7e-11 Score=105.84 Aligned_cols=127 Identities=26% Similarity=0.262 Sum_probs=43.7
Q ss_pred CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCc
Q 046382 91 HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLM 170 (691)
Q Consensus 91 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 170 (691)
+..++++|+|++|.|+ .+.. +-..+.+|+.|++++|.+.... .+..+++|++|++++|+|+ .+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIEN-LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-cccc-hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 4445777888888776 3432 2124677888888888776543 3667788888888888887 56554444467888
Q ss_pred EEEccCCccccc-CchhhhCCCCCCEEeccccccccccch---hHhhcCCCCCEEEc
Q 046382 171 DLNLSRNAFNGS-IPSSFADMKMLERLDISDNQLTGEIPE---RMATGCFSLKILAL 223 (691)
Q Consensus 171 ~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l 223 (691)
+|++++|+|... .-..++.+++|+.|++.+|.++ ..+. .+...+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence 888888877642 1245667777888888877776 2222 22344666666544
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=1e-11 Score=118.52 Aligned_cols=247 Identities=22% Similarity=0.156 Sum_probs=138.5
Q ss_pred ccccCCCCCCEEeCCCCCCccccCC--cccccCCCCCcEEeCCC--CccccccccCCCCCccccEEEecCCCCCCCcchh
Q 046382 13 ISLMHLISMEKLILSNNHFFQIPIS--LEPLFNLSKLKTFDGEI--CAETESHYNSLTPKFQLTSISLSGYIDGGTFPKF 88 (691)
Q Consensus 13 ~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 88 (691)
+.+..+..+++|+||+|.+.....- ...+...+.|+..+++. .......++..+ ..+...
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L----------------~~l~~a 87 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL----------------KMLSKA 87 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH----------------HHHHHH
Confidence 4667888999999999984332211 24567778888888887 222111111100 011122
Q ss_pred hcCCCCCCEEEccCCCCcccCch---HHhhcCCCCCEEEccCCcccccC-------------CcCccCCCccCEEEccCC
Q 046382 89 LYHQHDLKNADLSHLNLSGQFPN---WLLENNTNLVMLLLANNSLFGSF-------------RMPIHSHQNLATLDVSNN 152 (691)
Q Consensus 89 l~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~~L~~L~L~~n~~~~~~-------------~~~l~~l~~L~~L~Ls~n 152 (691)
+..+++|++||||.|-+.-..+. .++..+..|++|.|.+|.+.-.. .....+-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33444455555555544222111 12344555555555555441110 111334567777777777
Q ss_pred cCcccCch----hhhhCCCCCcEEEccCCcccc----cCchhhhCCCCCCEEeccccccccccchh---HhhcCCCCCEE
Q 046382 153 FFHGHIPV----EIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISDNQLTGEIPER---MATGCFSLKIL 221 (691)
Q Consensus 153 ~i~~~~~~----~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L 221 (691)
++. ..+. ..++..+.|+.+.+..|.|.. .....+..+++|+.|||.+|-++...... .+..+++|+.|
T Consensus 168 rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 765 2221 233445677777777777652 22345677788888888888766322222 23446677788
Q ss_pred EcccccCCccCcccc-----cCCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcC
Q 046382 222 ALSNNSLQGHIFSKK-----FNLTNLMRLQLDGNKFIGEI----PESLSKCYLLGGLYLSDNHL 276 (691)
Q Consensus 222 ~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~ 276 (691)
++++|.+.......+ ...|+|+.|.+.+|.++..- ...+...+.|..|++++|.+
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888887765433332 13678888888888776421 22334467788888888888
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.5e-12 Score=131.37 Aligned_cols=174 Identities=30% Similarity=0.499 Sum_probs=149.2
Q ss_pred CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCc
Q 046382 359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE 438 (691)
Q Consensus 359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~ 438 (691)
.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++.+..|+.+|++.|+++ .+|..++.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-------- 143 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-------- 143 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC--------
Confidence 33456788889888 78888888889999999999998 78889999999999999999997 566554432
Q ss_pred ccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeE
Q 046382 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHAL 518 (691)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 518 (691)
-|+.|-+++|+++ .+|..++....|..|
T Consensus 144 ---------------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 144 ---------------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHL 171 (722)
T ss_pred ---------------------------------------------------cceeEEEecCccc-cCCcccccchhHHHh
Confidence 3778899999999 889899999999999
Q ss_pred eCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCC
Q 046382 519 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 598 (691)
Q Consensus 519 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c 598 (691)
|.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..| .|..||++.|+++........+.+++++.+++||..-
T Consensus 172 d~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 172 DVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 99999998 67888999999999999999998 566666655 4889999999999887778889999999999999763
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.7e-11 Score=106.68 Aligned_cols=107 Identities=28% Similarity=0.375 Sum_probs=26.6
Q ss_pred CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL 221 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 221 (691)
..+++|+|++|.|+ .+. .+...+.+|+.|++++|.|+.. +.+..++.|++|++++|+++ .+...+...+++|++|
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 34455555555554 332 2222245555666666655532 23555566666666666665 4444333345566666
Q ss_pred EcccccCCccC-cccccCCCCCCEEEccCCcCc
Q 046382 222 ALSNNSLQGHI-FSKKFNLTNLMRLQLDGNKFI 253 (691)
Q Consensus 222 ~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 253 (691)
++++|+|.... ...+..+++|+.|++.+|++.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666554321 123334455555555555443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.5e-11 Score=114.41 Aligned_cols=222 Identities=22% Similarity=0.210 Sum_probs=114.1
Q ss_pred ccCCCCCCEEeCCCCCCccccCC---------cccccCCCCCcEEeCCCCccccccccCC-CCCccccEEEecCCCCCCC
Q 046382 15 LMHLISMEKLILSNNHFFQIPIS---------LEPLFNLSKLKTFDGEICAETESHYNSL-TPKFQLTSISLSGYIDGGT 84 (691)
Q Consensus 15 ~~~l~~L~~L~Ls~~~~~~~~~~---------~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~ 84 (691)
+.-+.+|.+|..++.. +|+. ...+.-+++|..+.++.|.. .++..+ ...+.|+.+......+...
T Consensus 178 ldf~~~l~~l~vs~~~---~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~ 252 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVK---DPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDV 252 (490)
T ss_pred HHhhhheeEEEecCCC---CCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeeccccccc
Confidence 3446677888877754 2221 12344556777777777543 222222 2233777777766544321
Q ss_pred cchhhcCCCCCCEEEccCC---CCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchh
Q 046382 85 FPKFLYHQHDLKNADLSHL---NLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE 161 (691)
Q Consensus 85 ~~~~l~~l~~L~~L~L~~~---~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 161 (691)
| .+-....+. |...- -.+|..-..+ ...+.|+++||++|.|+ .+..+..-.|.++.|++|+|.+. .+..
T Consensus 253 -~-~l~pe~~~~--D~~~~E~~t~~G~~~~~~-dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n- 324 (490)
T KOG1259|consen 253 -P-SLLPETILA--DPSGSEPSTSNGSALVSA-DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN- 324 (490)
T ss_pred -c-cccchhhhc--CccCCCCCccCCceEEec-chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-
Confidence 0 010001111 11110 0111111111 22345666666666653 33344555566666666666665 3332
Q ss_pred hhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCcc-CcccccCCC
Q 046382 162 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH-IFSKKFNLT 240 (691)
Q Consensus 162 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 240 (691)
+ +.+++|+.|||++|.++ .+..+-.++.+.++|.+++|.+. .+. ++ ..+-+|..||+++|+|... ....++++|
T Consensus 325 L-a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS-GL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 325 L-AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS-GL-RKLYSLVNLDLSSNQIEELDEVNHIGNLP 399 (490)
T ss_pred h-hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh-hh-HhhhhheeccccccchhhHHHhccccccc
Confidence 2 23566666666666665 33344455666666777666664 222 12 3455666677777766532 124466777
Q ss_pred CCCEEEccCCcCcc
Q 046382 241 NLMRLQLDGNKFIG 254 (691)
Q Consensus 241 ~L~~L~L~~n~l~~ 254 (691)
-|+.+.+.+|.+.+
T Consensus 400 CLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 400 CLETLRLTGNPLAG 413 (490)
T ss_pred HHHHHhhcCCCccc
Confidence 77777777777764
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-11 Score=121.08 Aligned_cols=111 Identities=27% Similarity=0.265 Sum_probs=47.3
Q ss_pred cCCCCCEEEccCCcccccCC-cCccCCCccCEEEccCCcCcccC-chhhhhCCCCCcEEEccCCcccccCch-hhhCCCC
Q 046382 116 NNTNLVMLLLANNSLFGSFR-MPIHSHQNLATLDVSNNFFHGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKM 192 (691)
Q Consensus 116 ~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~ 192 (691)
++.+|+...|.++.+..... .....+++++.|||++|-+..-. ...+...+|+|+.|+++.|.+..-... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44555555555554422111 12344555555555555443111 112333455555555555554311110 0113344
Q ss_pred CCEEeccccccccccchhHhhcCCCCCEEEcccc
Q 046382 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNN 226 (691)
Q Consensus 193 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 226 (691)
|+.|.++.|.++..--..+...+|+|+.|++..|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 5555555555442222223334455555555544
No 36
>PLN03150 hypothetical protein; Provisional
Probab=99.06 E-value=3.8e-10 Score=124.52 Aligned_cols=113 Identities=29% Similarity=0.484 Sum_probs=100.8
Q ss_pred CCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccc
Q 046382 408 EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI 487 (691)
Q Consensus 408 ~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (691)
.++.|+|++|.+.|.+|..+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~---------------------------------------------------------- 440 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK---------------------------------------------------------- 440 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC----------------------------------------------------------
Confidence 3778999999999888887654
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccC-CCCCeE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLEVF 566 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L 566 (691)
+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred EccCCcccccCC
Q 046382 567 KVAYNNLSGKIP 578 (691)
Q Consensus 567 ~l~~N~l~~~~p 578 (691)
++.+|...+-.|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999998655433
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=4.5e-10 Score=126.44 Aligned_cols=61 Identities=31% Similarity=0.413 Sum_probs=23.3
Q ss_pred cCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEecccc
Q 046382 139 HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN 201 (691)
Q Consensus 139 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 201 (691)
..+|.|+.|||++|.--+.+|..+.. +-+|++|+++++.+. .+|..++++..|.+|++..+
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 33334444444433222233333333 233444444444333 33333444444444444333
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=5.1e-10 Score=82.50 Aligned_cols=59 Identities=39% Similarity=0.545 Sum_probs=28.5
Q ss_pred CCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCc
Q 046382 514 GIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN 572 (691)
Q Consensus 514 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 572 (691)
+|++|++++|+++...++.|.++++|++|++++|.++...|+.|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444434444444555555555555544444444455555555555444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=6.9e-10 Score=81.80 Aligned_cols=61 Identities=44% Similarity=0.601 Sum_probs=57.3
Q ss_pred cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccc
Q 046382 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 549 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 549 (691)
|+|++|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999977778999999999999999999988889999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1.3e-10 Score=122.78 Aligned_cols=246 Identities=26% Similarity=0.268 Sum_probs=143.7
Q ss_pred CCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEc
Q 046382 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHL 342 (691)
Q Consensus 263 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l 342 (691)
+..++.+.+..|.+.. +-..+..+.+|+.|++.+|.+..... .+..+++|++|++++|.|.. +...-.++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccc-ccchhhccchhhhee
Confidence 3344444455555442 22234455566666666666653221 14556666666666666653 223333444666666
Q ss_pred cCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCC
Q 046382 343 SKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH 422 (691)
Q Consensus 343 ~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 422 (691)
++|.|+.+ ..+..++.|+.+++++|++...-+.....+.+++.+++.+|.+... ..+..+..+..+++..|.++..
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence 66666544 2344466777777777777643330035566777777777776532 2334444555556666666421
Q ss_pred CChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccccc--ccceEEcCCCe
Q 046382 423 IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILT--SMSGIDLSCNK 500 (691)
Q Consensus 423 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~ 500 (691)
-+. ..+. .|+.+++++|+
T Consensus 224 ~~l------------------------------------------------------------~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 224 EGL------------------------------------------------------------NELVMLHLRELYLSGNR 243 (414)
T ss_pred cCc------------------------------------------------------------ccchhHHHHHHhcccCc
Confidence 110 0012 37888888888
Q ss_pred eeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc---CCcc-cccCCCCCeEEccCCccccc
Q 046382 501 LTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK---IPPQ-LIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 501 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l~~N~l~~~ 576 (691)
+. ..+..+..+..+..|++++|++... ..+.....+..+..+.|.+... .... ....+.+....+.+|++...
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 87 4446677788888888888888743 3356667778888888877521 2221 45667888888888888765
Q ss_pred CC
Q 046382 577 IP 578 (691)
Q Consensus 577 ~p 578 (691)
.+
T Consensus 321 ~~ 322 (414)
T KOG0531|consen 321 SS 322 (414)
T ss_pred cc
Confidence 44
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=1.8e-10 Score=121.57 Aligned_cols=241 Identities=25% Similarity=0.233 Sum_probs=155.6
Q ss_pred hcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEE
Q 046382 285 GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTL 364 (691)
Q Consensus 285 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 364 (691)
..+..++.+.+..|.+.. ....+..+.+|+.+++.+|.+.......-.+++|++|++++|.|+.+. .+..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 345666777788887764 233466778888888888888754433446788888888888887653 35556668888
Q ss_pred eccCCCCCCCcchhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCC
Q 046382 365 DLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPT 443 (691)
Q Consensus 365 ~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~ 443 (691)
++++|.|+.. ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+...-...
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~----------------- 205 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD----------------- 205 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH-----------------
Confidence 8888887743 345557788888888888774433 1 466777777888887775211110
Q ss_pred cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhccc--CCCeEeCC
Q 046382 444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLS--GIHALNLS 521 (691)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls 521 (691)
.+..+..+++..|.++...+ +..+. .|+.++++
T Consensus 206 -------------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 206 -------------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLS 240 (414)
T ss_pred -------------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcc
Confidence 02344445778887763332 22233 38889999
Q ss_pred CCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccC---CC--CCCCCCcCcCcccCCCC
Q 046382 522 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKI---PD--RAQFSTFEEDSYEGNPF 596 (691)
Q Consensus 522 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~---p~--~~~~~~~~~~~~~~Np~ 596 (691)
+|++. ..+..+..+..+..||+++|++... ..+...+.+..+....|.+...- .. .....++....+.+||-
T Consensus 241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 241 GNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 99988 4446677888899999999988743 23455667777777777765321 11 22234445555666653
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=4.9e-09 Score=118.19 Aligned_cols=272 Identities=20% Similarity=0.188 Sum_probs=166.4
Q ss_pred cCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCc--CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC
Q 046382 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF--FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 193 (691)
Q Consensus 116 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 193 (691)
+....+...+-+|.+... +.. ..++.|++|-+..|. +. .++..++..++.|+.|||++|.--+.+|..++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 446677777777766332 222 234589999999986 55 7888888889999999999987767899999999999
Q ss_pred CEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCc--ccCCccccCCCCCCEEEc
Q 046382 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI--GEIPESLSKCYLLGGLYL 271 (691)
Q Consensus 194 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l 271 (691)
++|+++++.+. .+|.++ ..+..|.+|++..+.-....+.....+++|++|.+...... ...-..+..+..|+.+..
T Consensus 598 ryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999999998 899988 57999999999988765555566666999999998776421 112233445555555555
Q ss_pred cCCcCCCcchhhhhcCCCCC----EEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC------C-CCcccEE
Q 046382 272 SDNHLSGEIPRWLGNLSALE----GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF------S-PAHIEQV 340 (691)
Q Consensus 272 ~~n~~~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~------~-~~~L~~L 340 (691)
..... .....+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.+...... . ++++..+
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 33322 1111222223322 2232222222 344556777888888888887754322221 0 1223222
Q ss_pred EccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396 (691)
Q Consensus 341 ~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 396 (691)
...++.... .+......++|+.|.+..+.....+......+..+..+.+..+.+.
T Consensus 753 ~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 753 SILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred Hhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 222222111 1122234567777777776655444444444555554444444443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3e-10 Score=105.99 Aligned_cols=84 Identities=24% Similarity=0.147 Sum_probs=35.7
Q ss_pred CCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCC-cCcccCchhhhhCCCCCcEEE
Q 046382 95 LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN-FFHGHIPVEIGTYLPGLMDLN 173 (691)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~ 173 (691)
|++|||+...++..-...++..|.+|+.|.|.++++.+.+...++...+|+.|+++.+ .++......++..++.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4445554444443333333444444444444444444444444444444444444443 233222222333344444444
Q ss_pred ccCCc
Q 046382 174 LSRNA 178 (691)
Q Consensus 174 L~~n~ 178 (691)
++.|.
T Consensus 267 lsWc~ 271 (419)
T KOG2120|consen 267 LSWCF 271 (419)
T ss_pred chHhh
Confidence 44443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=1.5e-09 Score=113.01 Aligned_cols=109 Identities=27% Similarity=0.291 Sum_probs=83.4
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
++.++.|||++|+++... .+..++.|++|||++|.+....--...++. |+.|.+++|.++.. .++.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 788999999999998433 788899999999999999843333344444 99999999999744 4678889999999
Q ss_pred ccCCcccccCC--CCCCCCCcCcCcccCCCCCCCCC
Q 046382 568 VAYNNLSGKIP--DRAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 568 l~~N~l~~~~p--~~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
+++|-|.+.-. ....+..+..+.++|||..|..+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 99998876311 12233456677899999999754
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=3.6e-10 Score=117.55 Aligned_cols=128 Identities=27% Similarity=0.205 Sum_probs=83.2
Q ss_pred CCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEE
Q 046382 94 DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173 (691)
Q Consensus 94 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ 173 (691)
.|.+.+.++|.+. .+..+ +.-++.|+.|+|++|+++... .+..++.|++|||++|+++ .+|.--...+ +|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 4666677777765 44444 356677777777777775443 4667777788888887776 6664433333 477788
Q ss_pred ccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229 (691)
Q Consensus 174 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 229 (691)
+++|.++.. ..+.++.+|+.||+++|-+.+.-.-.....+..|+.|+|.+|.+-
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888777632 456777778888888877664333333344567777777777664
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.7e-09 Score=98.16 Aligned_cols=86 Identities=26% Similarity=0.231 Sum_probs=41.5
Q ss_pred cCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccc-cccccchhHhhcCCCCCEEE
Q 046382 144 LATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ-LTGEIPERMATGCFSLKILA 222 (691)
Q Consensus 144 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~ 222 (691)
|++||||+..|+..--..+.+.+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++.....-++..|..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55555555555433233333344555555555555554444555555555555555442 33222223344455555555
Q ss_pred cccccCC
Q 046382 223 LSNNSLQ 229 (691)
Q Consensus 223 l~~n~l~ 229 (691)
++.|.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 5555443
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=2.4e-08 Score=97.96 Aligned_cols=230 Identities=18% Similarity=0.193 Sum_probs=118.4
Q ss_pred CcEEeCCCCccccccc-cCC-CCCccccEEEecCCCC-CCCcc-hhhcCCCCCCEEEccCC-CCcccCchHHhhcCCCCC
Q 046382 47 LKTFDGEICAETESHY-NSL-TPKFQLTSISLSGYID-GGTFP-KFLYHQHDLKNADLSHL-NLSGQFPNWLLENNTNLV 121 (691)
Q Consensus 47 L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~L~~~~~-~~~~~-~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~ 121 (691)
|+.|.++++....... ..+ ...+++++|.+.+|.. ++... ..-..|++|++|++..| .++......+...+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 5555555544333221 111 2333666666666642 22222 22246788888888885 455444444556788888
Q ss_pred EEEccCCcc-ccc-CCcCccCCCccCEEEccCCc-CcccCchhhhhCCCCCcEEEccCCcc-cccC-chhhhCCCCCCEE
Q 046382 122 MLLLANNSL-FGS-FRMPIHSHQNLATLDVSNNF-FHGHIPVEIGTYLPGLMDLNLSRNAF-NGSI-PSSFADMKMLERL 196 (691)
Q Consensus 122 ~L~L~~n~~-~~~-~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L 196 (691)
+|+++.|.- .+. +..-..++..++.+.+.+|. ...+.-..+....+-+.++++.+|.. +... -..-..+..|+.|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 888888843 221 11224456667777666653 11111122233344566677666543 2111 0112345677777
Q ss_pred eccccc-cccccchhHhhcCCCCCEEEccccc-CCccCccccc-CCCCCCEEEccCCcCccc--CCccccCCCCCCEEEc
Q 046382 197 DISDNQ-LTGEIPERMATGCFSLKILALSNNS-LQGHIFSKKF-NLTNLMRLQLDGNKFIGE--IPESLSKCYLLGGLYL 271 (691)
Q Consensus 197 ~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l 271 (691)
+.+++. +++..-..+..++++|+.+.++.++ ++......++ +.+.|+.+++..+..... +...-.+++.|+.+.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 777653 3333444455667777777777765 2222222222 456666666666553311 1122234566666666
Q ss_pred cCCcC
Q 046382 272 SDNHL 276 (691)
Q Consensus 272 ~~n~~ 276 (691)
++|..
T Consensus 380 shce~ 384 (483)
T KOG4341|consen 380 SHCEL 384 (483)
T ss_pred hhhhh
Confidence 65543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=5.3e-08 Score=80.50 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=82.2
Q ss_pred ccccceEEcCCCeeeeccchhh-hcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF 566 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 566 (691)
...|+..+|++|.+. ..|..| ...+.+++|+|++|.|+ .+|..+..++.|+.|+++.|++. ..|..+..+.++-+|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 356788899999998 455554 44568999999999999 67888999999999999999998 667777779999999
Q ss_pred EccCCcccccCCCCCCCCCcCc-CcccCCCCCCCCC
Q 046382 567 KVAYNNLSGKIPDRAQFSTFEE-DSYEGNPFLCGKP 601 (691)
Q Consensus 567 ~l~~N~l~~~~p~~~~~~~~~~-~~~~~Np~~c~~~ 601 (691)
+..+|.+-....+ ...++... ..+.++||--+|+
T Consensus 129 ds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 129 DSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cCCCCccccCcHH-HhccccHHHHHhcCCcccccCc
Confidence 9999987643333 22333322 2456677766654
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=4.7e-07 Score=83.91 Aligned_cols=139 Identities=27% Similarity=0.310 Sum_probs=63.6
Q ss_pred ccCCCccCEEEccCCcCcccCchhhh---hCCCCCcEEEccCCcccccCchh-------------hhCCCCCCEEecccc
Q 046382 138 IHSHQNLATLDVSNNFFHGHIPVEIG---TYLPGLMDLNLSRNAFNGSIPSS-------------FADMKMLERLDISDN 201 (691)
Q Consensus 138 l~~l~~L~~L~Ls~n~i~~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n 201 (691)
+.+||+|+..+||+|.+....|..+. +..+.|++|.+++|.+..+.... ...-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34455555555555555444443322 22345566666665543211111 123356666666666
Q ss_pred ccccccchhH----hhcCCCCCEEEcccccCCccC-----cccccCCCCCCEEEccCCcCcccC----CccccCCCCCCE
Q 046382 202 QLTGEIPERM----ATGCFSLKILALSNNSLQGHI-----FSKKFNLTNLMRLQLDGNKFIGEI----PESLSKCYLLGG 268 (691)
Q Consensus 202 ~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~ 268 (691)
++. ..+... +..-..|+.+.+..|.|.... ...++.+.+|+.||+.+|.++... ...+..++.|+.
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 665 333322 122235666666666554211 112234455666666665554321 122333344455
Q ss_pred EEccCCcCC
Q 046382 269 LYLSDNHLS 277 (691)
Q Consensus 269 L~l~~n~~~ 277 (691)
|.+.+|-++
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 555555443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=1.7e-07 Score=86.67 Aligned_cols=248 Identities=22% Similarity=0.153 Sum_probs=135.3
Q ss_pred ccccCCCCCCEEeCCCCCCccccCC--cccccCCCCCcEEeCCC--CccccccccCCCCCccccEEEecCCCCCCCcchh
Q 046382 13 ISLMHLISMEKLILSNNHFFQIPIS--LEPLFNLSKLKTFDGEI--CAETESHYNSLTPKFQLTSISLSGYIDGGTFPKF 88 (691)
Q Consensus 13 ~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 88 (691)
+.+..+..+.+++||||.|.+.... ...+.+-++|+..+++. .....+.+.+ +| ..+...
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~-----~L-----------~~Ll~a 87 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYS-----NL-----------VMLLKA 87 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHH-----HH-----------HHHHHH
Confidence 4455678889999999984332211 12345556677777665 1111111110 00 012234
Q ss_pred hcCCCCCCEEEccCCCCcccCchH---HhhcCCCCCEEEccCCcccccCCc-------------CccCCCccCEEEccCC
Q 046382 89 LYHQHDLKNADLSHLNLSGQFPNW---LLENNTNLVMLLLANNSLFGSFRM-------------PIHSHQNLATLDVSNN 152 (691)
Q Consensus 89 l~~l~~L~~L~L~~~~~~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n 152 (691)
+.+||+|+..+||.|-+....|+. ++++-+.|++|.+++|.+.-.... ....-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 556667777777776665444432 234556677777777655211111 1234467777777777
Q ss_pred cCcccCchhh----hhCCCCCcEEEccCCcccccC-----chhhhCCCCCCEEeccccccccccchh---HhhcCCCCCE
Q 046382 153 FFHGHIPVEI----GTYLPGLMDLNLSRNAFNGSI-----PSSFADMKMLERLDISDNQLTGEIPER---MATGCFSLKI 220 (691)
Q Consensus 153 ~i~~~~~~~~----~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~ 220 (691)
++. ..+... +..-.+|+++.+..|.|.... -..+..+.+|+.||+..|-++-..... .....+.|+.
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 765 444322 222246777777777765321 112445677888888887766222111 1233455777
Q ss_pred EEcccccCCccCcccc------cCCCCCCEEEccCCcCcccCCcc-----c--cCCCCCCEEEccCCcCC
Q 046382 221 LALSNNSLQGHIFSKK------FNLTNLMRLQLDGNKFIGEIPES-----L--SKCYLLGGLYLSDNHLS 277 (691)
Q Consensus 221 L~l~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~-----~--~~l~~L~~L~l~~n~~~ 277 (691)
|.+..|-++......+ ...|+|+.|-..+|.+.+..... + ..++-|..|.+.+|++.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 8887777664333222 13577888888877655432211 1 24566777788888886
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=5.7e-07 Score=84.47 Aligned_cols=226 Identities=18% Similarity=0.104 Sum_probs=120.3
Q ss_pred ccEEEecCCCCCCC--cchhhcCCCCCCEEEccCCCCccc-CchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEE
Q 046382 71 LTSISLSGYIDGGT--FPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATL 147 (691)
Q Consensus 71 L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 147 (691)
++-|.+.++.+... ....-..++.++++||.+|.|++- -...++.++|.|+.|+|+.|.+...+...-....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33455555555432 112223556677777777777531 112345677777777777777654433221345677777
Q ss_pred EccCCcCcccCchhhhhCCCCCcEEEccCCccccc--CchhhhCC-CCCCEEeccccccccc-cchhHhhcCCCCCEEEc
Q 046382 148 DVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADM-KMLERLDISDNQLTGE-IPERMATGCFSLKILAL 223 (691)
Q Consensus 148 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l-~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l 223 (691)
-|.+..+.-.-...+...+|.+++|.++.|..... ........ +.+++|....|...-- --..+..-+|++..+-+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 77777655333334444466667776666643311 11111111 2344444444432100 00112234667777777
Q ss_pred ccccCCccCc-ccccCCCCCCEEEccCCcCcccC-CccccCCCCCCEEEccCCcCCCcchh------hhhcCCCCCEEec
Q 046382 224 SNNSLQGHIF-SKKFNLTNLMRLQLDGNKFIGEI-PESLSKCYLLGGLYLSDNHLSGEIPR------WLGNLSALEGIRM 295 (691)
Q Consensus 224 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~------~l~~l~~L~~L~l 295 (691)
..|.+..... ..+..+|.+.-|.|+.+++..-. .+.+..++.|..|.++++++.+.... .++.+++++.|+=
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 7777654322 23345666667777777765321 24566777888888888877543211 2456677777664
Q ss_pred C
Q 046382 296 P 296 (691)
Q Consensus 296 ~ 296 (691)
+
T Consensus 287 s 287 (418)
T KOG2982|consen 287 S 287 (418)
T ss_pred c
Confidence 3
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=3e-07 Score=86.25 Aligned_cols=212 Identities=17% Similarity=0.071 Sum_probs=117.3
Q ss_pred hcCCCCCCEEEccCCCCcccCch-HHhhcCCCCCEEEccCCccccc--CCcCccCCCccCEEEccCCcCcccCchhhhhC
Q 046382 89 LYHQHDLKNADLSHLNLSGQFPN-WLLENNTNLVMLLLANNSLFGS--FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY 165 (691)
Q Consensus 89 l~~l~~L~~L~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 165 (691)
+.....++.|.+.++.|...-.. .+-..++.++.+||.+|.+++. +...+.++|.|+.|+++.|.+...+... ...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-ccc
Confidence 33444566677777766532221 2234678899999999988542 3344678899999999999876333221 122
Q ss_pred CCCCcEEEccCCcccc-cCchhhhCCCCCCEEecccccccc--ccchhHhhcCCCCCEEEcccccCCccC--cccccCCC
Q 046382 166 LPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTG--EIPERMATGCFSLKILALSNNSLQGHI--FSKKFNLT 240 (691)
Q Consensus 166 l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~ 240 (691)
..+|++|.|.+..+.. .....+..+|.+++|.++.|.+.. .-....-..-+.+++|....|...... ..--.-+|
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 5688899888887653 233456677888888888774321 001111111224444444444321000 00001246
Q ss_pred CCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCCc-chhhhhcCCCCCEEecCCCccC
Q 046382 241 NLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGE-IPRWLGNLSALEGIRMPNNNLE 301 (691)
Q Consensus 241 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~ 301 (691)
++..+.+..|.+..... ..+..++.+.-|+++.+.+.+. ..+.+.+++.|..|.++++.+.
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 66666666666543321 2334455555666666666431 2244556666666666666654
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=1.2e-07 Score=93.17 Aligned_cols=129 Identities=19% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCCCCEEEccCCcC-CCcchhhh-hcCCCCCEEecCCCccCCC--cchhhcCCCCCCEEEccCCcCcccC-----CC-C
Q 046382 262 KCYLLGGLYLSDNHL-SGEIPRWL-GNLSALEGIRMPNNNLEGP--IPIEFCQLSALKILDLSNNSIFGTL-----PS-C 331 (691)
Q Consensus 262 ~l~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~-----~~-~ 331 (691)
++.+|+.+.++.|+- ++.....+ .+++.|+.+++.++..... +...-.+++.|+.+.+++|...... .. .
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 445555555555542 21111122 2345666666665543211 1111124556666666665432111 00 1
Q ss_pred CCCCcccEEEccCCccc-cccccccCCCCCccEEeccCCCCCCC--cchhhcCCCCccEEec
Q 046382 332 FSPAHIEQVHLSKNKIE-GRLESIIHDSPYLVTLDLSYNRLHGS--IPNRIDRLPQLNYLLL 390 (691)
Q Consensus 332 ~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~L 390 (691)
-....++.+.++++... +..-..+..+++|+.+++-+++-... +...-..+|++++..+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 13456777777777543 33344566788888888887753211 1122344666655433
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=2.8e-07 Score=76.38 Aligned_cols=112 Identities=27% Similarity=0.339 Sum_probs=58.2
Q ss_pred CCEEEccCCCCcccCchHH--hhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEE
Q 046382 95 LKNADLSHLNLSGQFPNWL--LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDL 172 (691)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 172 (691)
+..++|+.|++- .++... ......|+..+|++|.+....+..-...+.++.|++++|.++ .+|..+.. ++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhc
Confidence 455666666553 333322 123344444566666554333332333445566666666665 55655443 5566666
Q ss_pred EccCCcccccCchhhhCCCCCCEEeccccccccccchhH
Q 046382 173 NLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM 211 (691)
Q Consensus 173 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 211 (691)
+++.|.+. ..|..+..+.++-.|+..+|.+. ++|..+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 66666655 44555555555555555555554 454443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=4.2e-06 Score=56.16 Aligned_cols=36 Identities=39% Similarity=0.672 Sum_probs=19.1
Q ss_pred CCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382 514 GIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550 (691)
Q Consensus 514 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (691)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555666666666666555
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=1.5e-05 Score=71.12 Aligned_cols=105 Identities=25% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccC-cccccCCCCCCE
Q 046382 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI-FSKKFNLTNLMR 244 (691)
Q Consensus 166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 244 (691)
..+...+||++|.+... ..|..++.|.+|.+.+|+|+ .+...+...+++|+.|.+.+|.+.... ...+..+|.|++
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 44666777777776522 34666777777777777777 566666566667777777777665321 123445666666
Q ss_pred EEccCCcCcccCC---ccccCCCCCCEEEccC
Q 046382 245 LQLDGNKFIGEIP---ESLSKCYLLGGLYLSD 273 (691)
Q Consensus 245 L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~ 273 (691)
|.+-+|.+...-- ..+..+++|+.||.++
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666666543211 2234455555555544
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=3.6e-06 Score=92.88 Aligned_cols=149 Identities=21% Similarity=0.204 Sum_probs=86.7
Q ss_pred CCCcEEeCCCCccccccccCC--CCCccccEEEecCCCCC-CCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCC
Q 046382 45 SKLKTFDGEICAETESHYNSL--TPKFQLTSISLSGYIDG-GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLV 121 (691)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 121 (691)
.+|++||+++......++..- .-+++|++|.+++-.+. +.+.....++++|+.||+|+++++ .+ .+ .+++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HH-HhccccHH
Confidence 467777777744433333211 12337788887776653 334455567788888888888776 33 33 37788888
Q ss_pred EEEccCCcccc-cCCcCccCCCccCEEEccCCcCcccCch------hhhhCCCCCcEEEccCCcccccCchhh-hCCCCC
Q 046382 122 MLLLANNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPV------EIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKML 193 (691)
Q Consensus 122 ~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L 193 (691)
+|.+.+-.+.. ..-..+-.+++|+.||+|..... ..+. +.+..+|+|+.||.+++.+.+..-+.+ ..-++|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 87776655532 11123556788888888876543 2221 122346788888888777764433332 223444
Q ss_pred CEEe
Q 046382 194 ERLD 197 (691)
Q Consensus 194 ~~L~ 197 (691)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 4443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=9.8e-06 Score=54.39 Aligned_cols=38 Identities=32% Similarity=0.645 Sum_probs=32.5
Q ss_pred cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCc
Q 046382 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTG 527 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 527 (691)
++|++|++++|+++ .+|..++++++|+.|++++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999999 567779999999999999999984
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3.5e-05 Score=78.25 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=40.7
Q ss_pred CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC-cCcccCCcCCCCCCCCCEE
Q 046382 334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN-YIKGEIPVQLCQLKEVRLI 412 (691)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L 412 (691)
+.+++.|++++|.++..+ .-.++|+.|.++++.--...|+.+ .++|++|++++| .+. .+| .+|+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceE
Confidence 466777777777666442 122357777777643333455443 246777777776 333 333 245666
Q ss_pred EccCCC
Q 046382 413 DLSHNN 418 (691)
Q Consensus 413 ~l~~n~ 418 (691)
+++++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=6.3e-06 Score=90.96 Aligned_cols=106 Identities=21% Similarity=0.179 Sum_probs=49.0
Q ss_pred cccEEEecCCCCC-CCcchhhc-CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEE
Q 046382 70 QLTSISLSGYIDG-GTFPKFLY-HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATL 147 (691)
Q Consensus 70 ~L~~L~L~~~~~~-~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 147 (691)
+|++|+++|...- ...+..++ -+|.|++|.+++-.+...--..++.++++|..||+|+++++.. ..++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5666666554321 12222222 3555666666554442221122344555666666666555433 335555555555
Q ss_pred EccCCcCcc-cCchhhhhCCCCCcEEEccCCc
Q 046382 148 DVSNNFFHG-HIPVEIGTYLPGLMDLNLSRNA 178 (691)
Q Consensus 148 ~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~ 178 (691)
.+.+-.+.. ..-..+|. +++|+.||+|...
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeeccccc
Confidence 555544431 11123333 4555555555443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.77 E-value=5.5e-05 Score=65.64 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=35.2
Q ss_pred hhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC
Q 046382 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 193 (691)
Q Consensus 114 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 193 (691)
|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 44444444444442 233333334444444444444443 33 33344444344444444433 2222233334444444
Q ss_pred CEEeccccccccccchhHhhcCCCCCEEEcc
Q 046382 194 ERLDISDNQLTGEIPERMATGCFSLKILALS 224 (691)
Q Consensus 194 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 224 (691)
+.+++..+ +. .++...+.++ +++.+.+.
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 44444333 22 3333333333 44444433
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=5.5e-05 Score=67.57 Aligned_cols=104 Identities=22% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCc-chhhcCCCCccEEecc
Q 046382 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI-PNRIDRLPQLNYLLLA 391 (691)
Q Consensus 313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~L~ 391 (691)
+...+|+++|.+. ..+....++.|..|.+.+|+|+.+.+..-..+++|+.|.+.+|.|.... -+.+..+|+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 5566777777765 3444446677777777777777777766666777888888888776321 1345677888888888
Q ss_pred cCcCcccC---CcCCCCCCCCCEEEccCC
Q 046382 392 HNYIKGEI---PVQLCQLKEVRLIDLSHN 417 (691)
Q Consensus 392 ~n~i~~~~---~~~~~~l~~L~~L~l~~n 417 (691)
+|+++..- .-.+..+++|+.||.+.=
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 88776321 123567788888887654
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00017 Score=73.40 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=26.5
Q ss_pred CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCC
Q 046382 91 HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN 152 (691)
Q Consensus 91 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 152 (691)
.+.++++|++++|.++ .+|. -..+|++|.+++|.-....|..+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3455556666655554 4441 12345666665543323333222 245666666655
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.54 E-value=0.0002 Score=62.11 Aligned_cols=15 Identities=13% Similarity=0.507 Sum_probs=5.1
Q ss_pred hhhCCCCCCEEeccc
Q 046382 186 SFADMKMLERLDISD 200 (691)
Q Consensus 186 ~~~~l~~L~~L~L~~ 200 (691)
.|.++++|+.+.+.+
T Consensus 30 ~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT-SEEEESS
T ss_pred hcccccccccccccc
Confidence 333333344444433
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.38 E-value=3.4e-05 Score=84.10 Aligned_cols=64 Identities=28% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCCCCEEeccccc-cccccchhHhhcCCCCCEEEccccc-CCccCcccc-cCCCCCCEEEccCCcC
Q 046382 189 DMKMLERLDISDNQ-LTGEIPERMATGCFSLKILALSNNS-LQGHIFSKK-FNLTNLMRLQLDGNKF 252 (691)
Q Consensus 189 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l 252 (691)
.+++|+.|+++.+. +++..-..+...+++|+.|.+.++. ++......+ ..+++|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555555555555 4433333333345566666555554 332222222 2355566666665543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=6.4e-05 Score=81.95 Aligned_cols=191 Identities=22% Similarity=0.090 Sum_probs=105.1
Q ss_pred cCCCCCCEEEccCCCCcccC-chHHhhcCCCCCEEEccCC-cccccCC----cCccCCCccCEEEccCCc-CcccCchhh
Q 046382 90 YHQHDLKNADLSHLNLSGQF-PNWLLENNTNLVMLLLANN-SLFGSFR----MPIHSHQNLATLDVSNNF-FHGHIPVEI 162 (691)
Q Consensus 90 ~~l~~L~~L~L~~~~~~~~~-~~~~~~~l~~L~~L~L~~n-~~~~~~~----~~l~~l~~L~~L~Ls~n~-i~~~~~~~~ 162 (691)
..++.|+.|.+.++.-.... -..+...++.|+.|+++++ ......+ .....+++|+.|+++++. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34678888888877432221 1223467888888888873 2111111 234456888888888887 665555556
Q ss_pred hhCCCCCcEEEccCCc-ccccC-chhhhCCCCCCEEeccccccc-cccchhHhhcCCCCCEEEcccccCCccCcccccCC
Q 046382 163 GTYLPGLMDLNLSRNA-FNGSI-PSSFADMKMLERLDISDNQLT-GEIPERMATGCFSLKILALSNNSLQGHIFSKKFNL 239 (691)
Q Consensus 163 ~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 239 (691)
...+++|++|.+.+|. ++... -.....+++|++|+++++... +..-......+++++.|.+....- +
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence 6557888888877776 44322 223456778888888887643 121222345577777755443221 2
Q ss_pred CCCCEEEccCCcCc---ccCCccccCCCCCCEEEccCCcCCCcc-hhhhhcCCCC
Q 046382 240 TNLMRLQLDGNKFI---GEIPESLSKCYLLGGLYLSDNHLSGEI-PRWLGNLSAL 290 (691)
Q Consensus 240 ~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L 290 (691)
+.++.+.+.+.... .........++.++.+.+..+...... ...+.+++.|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 33333333332211 111223456666777777666643222 2333444444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00025 Score=66.40 Aligned_cols=57 Identities=30% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCCcEEEccCCcccc-cCchhhhCCCCCCEEecccccccc--ccchhHhhcCCCCCEEEc
Q 046382 167 PGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTG--EIPERMATGCFSLKILAL 223 (691)
Q Consensus 167 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l 223 (691)
|+|++|++++|+|.. .--..+..+.+|..|++.+|..+. .--..+|.-+++|+.|+-
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 444444444444431 000113334445555555554431 111223444555555543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00028 Score=66.02 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=76.3
Q ss_pred cccEEEecCCCC-CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCC--cccccCCcCccCCCccCE
Q 046382 70 QLTSISLSGYID-GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN--SLFGSFRMPIHSHQNLAT 146 (691)
Q Consensus 70 ~L~~L~L~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~ 146 (691)
.++.+.+..|.- .+.+......+..|+.|++.+..++ .+.. |-.+++|+.|.++.| ++.+........+|+|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~ 95 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV 95 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence 344444443332 2334444455666777777777665 3333 356778888888888 555555555666688888
Q ss_pred EEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCc---hhhhCCCCCCEEecccc
Q 046382 147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIP---SSFADMKMLERLDISDN 201 (691)
Q Consensus 147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n 201 (691)
|++++|++...-...-.+.+.+|..|++.+|..+...- ..|.-+++|++||-...
T Consensus 96 l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 96 LNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred EeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88888877621001111225677888888887664211 23556677777765443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=8.6e-05 Score=69.53 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEE
Q 046382 93 HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDL 172 (691)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 172 (691)
.+.+.|++.+|.+++. .+..+++.|++|.|+-|+|+...| +..|.+|++|.|..|.|.+.-.....+.+|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3456677777766532 234667777777777777755443 66667777777777766622222233445666666
Q ss_pred EccCCcccccCch-----hhhCCCCCCEEe
Q 046382 173 NLSRNAFNGSIPS-----SFADMKMLERLD 197 (691)
Q Consensus 173 ~L~~n~i~~~~~~-----~~~~l~~L~~L~ 197 (691)
.|..|.-.+..+. .+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666554433222 234455555554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00012 Score=68.68 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=44.0
Q ss_pred CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL 221 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 221 (691)
.+.+.|+..+|.++ ...++..++.|+.|.|+-|+|+.. ..+..+++|++|.|..|.|.+.-.-....++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455555555554 223444456666666666666532 2355666666666666666522122233455666666
Q ss_pred EcccccCCc
Q 046382 222 ALSNNSLQG 230 (691)
Q Consensus 222 ~l~~n~l~~ 230 (691)
.|..|.-.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 665555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0077 Score=33.40 Aligned_cols=8 Identities=75% Similarity=0.941 Sum_probs=2.8
Q ss_pred EeCCCCcC
Q 046382 518 LNLSHNNL 525 (691)
Q Consensus 518 L~Ls~N~l 525 (691)
|||++|++
T Consensus 5 Ldls~n~l 12 (22)
T PF00560_consen 5 LDLSGNNL 12 (22)
T ss_dssp EEETSSEE
T ss_pred EECCCCcC
Confidence 33333333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.95 E-value=0.015 Score=32.20 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=17.6
Q ss_pred ccceEEcCCCeeeeccchhhhcc
Q 046382 490 SMSGIDLSCNKLTGEIPTQIGYL 512 (691)
Q Consensus 490 ~L~~L~Ls~n~l~~~~~~~~~~l 512 (691)
+|++|||++|+++ .+|..|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4899999999999 777767653
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.40 E-value=0.0018 Score=68.76 Aligned_cols=90 Identities=28% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCCCCCEEeccccccccccch---hHhhcCCC-CCEEEcccccCCccC----cccccCC-CCCCEEEccCCcCcccCC--
Q 046382 189 DMKMLERLDISDNQLTGEIPE---RMATGCFS-LKILALSNNSLQGHI----FSKKFNL-TNLMRLQLDGNKFIGEIP-- 257 (691)
Q Consensus 189 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~-L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~~~-- 257 (691)
...++++|++++|.++...-. ......+. +..+++..|.+.+.. ...+..+ +.++.++++.|.++....
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 355666666666665421111 11122233 455666666665431 1223333 567788888888765433
Q ss_pred --ccccCCCCCCEEEccCCcCCC
Q 046382 258 --ESLSKCYLLGGLYLSDNHLSG 278 (691)
Q Consensus 258 --~~~~~l~~L~~L~l~~n~~~~ 278 (691)
..+..++.++.+.++.|.+..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 345567788888888888864
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.04 E-value=0.0048 Score=56.63 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=72.7
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
....+.||++.|++. ..-..|+-++.|..|+++.|++. ..|..++++..+..+++.+|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 456788999999987 55667888889999999999998 78888999999999999999887 7788899999999999
Q ss_pred ccCCccc
Q 046382 568 VAYNNLS 574 (691)
Q Consensus 568 l~~N~l~ 574 (691)
+.+|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999865
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.03 E-value=0.0017 Score=68.92 Aligned_cols=84 Identities=26% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCEEEccCCcccccCC----cCccCCCccCEEEccCCcCcccCchhhhhCC----CCCcEEEccCCccccc----Cchhh
Q 046382 120 LVMLLLANNSLFGSFR----MPIHSHQNLATLDVSNNFFHGHIPVEIGTYL----PGLMDLNLSRNAFNGS----IPSSF 187 (691)
Q Consensus 120 L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l----~~L~~L~L~~n~i~~~----~~~~~ 187 (691)
+.+|.|.+|.+..... ..+...+.|..|++++|.+.+..-..+...+ ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555555555433211 2234455566666666655532222222211 1234444444444422 22333
Q ss_pred hCCCCCCEEecccccc
Q 046382 188 ADMKMLERLDISDNQL 203 (691)
Q Consensus 188 ~~l~~L~~L~L~~n~l 203 (691)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3344555555555544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.30 E-value=0.087 Score=27.00 Aligned_cols=13 Identities=62% Similarity=0.731 Sum_probs=4.4
Q ss_pred ccCEEEccCCcCc
Q 046382 143 NLATLDVSNNFFH 155 (691)
Q Consensus 143 ~L~~L~Ls~n~i~ 155 (691)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.03 E-value=0.16 Score=29.42 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.8
Q ss_pred CcCCEEeCCCccccc
Q 046382 537 KQIESLDLSYNLLHG 551 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~~ 551 (691)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.03 E-value=0.16 Score=29.42 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.8
Q ss_pred CcCCEEeCCCccccc
Q 046382 537 KQIESLDLSYNLLHG 551 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~~ 551 (691)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=0.038 Score=49.99 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCCEEEccCCcccccCCcCccCCCccCEEEccCCcC-cccCchhhhhCCCCCcEEEccCCc-ccccCchhhhCCCCCCEE
Q 046382 119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF-HGHIPVEIGTYLPGLMDLNLSRNA-FNGSIPSSFADMKMLERL 196 (691)
Q Consensus 119 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i-~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L 196 (691)
.++.+|-+++.|....-..+..++.++.|.+.+|.- .+.--..+....++|+.|++++|. |+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 355566666665555444555566666666666532 111111222234677777777654 554444556666666666
Q ss_pred ecccc
Q 046382 197 DISDN 201 (691)
Q Consensus 197 ~L~~n 201 (691)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.43 E-value=0.22 Score=28.77 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=14.0
Q ss_pred ccCCCeEeCCCCcCCcccchhh
Q 046382 512 LSGIHALNLSHNNLTGTIPTTF 533 (691)
Q Consensus 512 l~~L~~L~Ls~N~l~~~~p~~~ 533 (691)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777775544444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.43 E-value=0.22 Score=28.77 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=14.0
Q ss_pred ccCCCeEeCCCCcCCcccchhh
Q 046382 512 LSGIHALNLSHNNLTGTIPTTF 533 (691)
Q Consensus 512 l~~L~~L~Ls~N~l~~~~p~~~ 533 (691)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777775544444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.43 E-value=0.01 Score=54.58 Aligned_cols=88 Identities=22% Similarity=0.236 Sum_probs=75.1
Q ss_pred hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCc
Q 046382 507 TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTF 586 (691)
Q Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 586 (691)
..+......+.||++.|++. -.-..|+-++.|..||++.|++. ..|..+..+..+..+++.+|.++..+-+..+.+..
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 45677889999999999997 44566888999999999999998 78888999899999999999998877777777788
Q ss_pred CcCcccCCCC
Q 046382 587 EEDSYEGNPF 596 (691)
Q Consensus 587 ~~~~~~~Np~ 596 (691)
+..+..+||+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 8888888874
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=0.045 Score=49.54 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=46.2
Q ss_pred CCcEEEccCCcccccCchhhhCCCCCCEEecccccccc-ccchhHhhcCCCCCEEEcccc-cCCccCcccccCCCCCCEE
Q 046382 168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG-EIPERMATGCFSLKILALSNN-SLQGHIFSKKFNLTNLMRL 245 (691)
Q Consensus 168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 245 (691)
.++.++.+++.|..+.-+.+..++.++.|.+.+|.--+ .--..+....++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 56777777777776666667777777777777765321 111122223456666666654 3444333444455555555
Q ss_pred EccC
Q 046382 246 QLDG 249 (691)
Q Consensus 246 ~L~~ 249 (691)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.63 E-value=0.15 Score=28.83 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=5.7
Q ss_pred CcCCEEeCCCcccc
Q 046382 537 KQIESLDLSYNLLH 550 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~ 550 (691)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555444
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=84.02 E-value=0.41 Score=60.02 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=26.2
Q ss_pred eCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCC
Q 046382 543 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604 (691)
Q Consensus 543 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~ 604 (691)
||++|+|+.+.+..|..+++|+.|+| +||||.|+|.+.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdL-----------------------sgNPw~CDC~L~W 39 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDL-----------------------SGNPFECDCGLAR 39 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEe-----------------------eCCccccccccHH
Confidence 56777777666666666666666554 5677888887653
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.91 E-value=1.6 Score=25.25 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=8.8
Q ss_pred CcCCEEeCCCcccc
Q 046382 537 KQIESLDLSYNLLH 550 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~ 550 (691)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.04 E-value=23 Score=37.04 Aligned_cols=59 Identities=24% Similarity=0.181 Sum_probs=28.1
Q ss_pred ccEEeccCCCCCCCcch---hhcCCCCccEEecccCcCcc----cCCcCCCCCCCCCEEEccCCCC
Q 046382 361 LVTLDLSYNRLHGSIPN---RIDRLPQLNYLLLAHNYIKG----EIPVQLCQLKEVRLIDLSHNNL 419 (691)
Q Consensus 361 L~~L~ls~n~i~~~~~~---~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l 419 (691)
+..+.++.+........ ....-+.+..|++++|.... .+|.....-..++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 45556666655522211 22334566677777766542 2233333334444444444443
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.05 E-value=17 Score=37.82 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=60.3
Q ss_pred CCCEEecCCCccCCCcchh--hcCCCCCCEEEccCCcCccc-CCCCC---------CCCcccEEEccCCccccccc---c
Q 046382 289 ALEGIRMPNNNLEGPIPIE--FCQLSALKILDLSNNSIFGT-LPSCF---------SPAHIEQVHLSKNKIEGRLE---S 353 (691)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~i~~~-~~~~~---------~~~~L~~L~l~~n~i~~~~~---~ 353 (691)
.+++|..+.|...+..... ...-+..+.+++..-.-..+ .+... ...-+..+.++.+....... .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4777888877766543322 33345666666654322111 00000 11235667777776653322 2
Q ss_pred ccCCCCCccEEeccCCCCCC----CcchhhcCCCCccEEecccCcCc
Q 046382 354 IIHDSPYLVTLDLSYNRLHG----SIPNRIDRLPQLNYLLLAHNYIK 396 (691)
Q Consensus 354 ~~~~~~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~ 396 (691)
.+..-+.+..|++++|.... .+|.....-..++.+..+.|..+
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 34556789999999998764 23444444556777777766654
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.61 E-value=4.7 Score=23.76 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=9.3
Q ss_pred CcCCEEeCCCcccc
Q 046382 537 KQIESLDLSYNLLH 550 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~ 550 (691)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777777665
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.72 E-value=4.9 Score=23.21 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=10.8
Q ss_pred CccCEEEccCCcCcccCch
Q 046382 142 QNLATLDVSNNFFHGHIPV 160 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~~~~ 160 (691)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35666666666666 5553
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.11 E-value=3.8 Score=23.58 Aligned_cols=13 Identities=23% Similarity=0.153 Sum_probs=9.2
Q ss_pred CCCCCEEeCCCCC
Q 046382 18 LISMEKLILSNNH 30 (691)
Q Consensus 18 l~~L~~L~Ls~~~ 30 (691)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677777777776
No 92
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=56.95 E-value=9 Score=24.76 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=2.5
Q ss_pred hhhhHH
Q 046382 655 NPYWRR 660 (691)
Q Consensus 655 ~~~~~~ 660 (691)
+.||||
T Consensus 33 ~~~~rR 38 (40)
T PF08693_consen 33 FFWYRR 38 (40)
T ss_pred heEEec
Confidence 334444
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.96 E-value=7.8 Score=41.16 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=38.4
Q ss_pred ccccceEEcCCCeeeecc--chhhhcccCCCeEeCCCCcCCcccchhhcC--CCcCCEEeCCCcccc
Q 046382 488 LTSMSGIDLSCNKLTGEI--PTQIGYLSGIHALNLSHNNLTGTIPTTFSN--LKQIESLDLSYNLLH 550 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~ 550 (691)
.+.+..++|++|++.... ...-...+.|++|+||+|...-.....+.+ ...|++|-+.+|++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 567788888998875322 122234577888888888322111122222 345788888888885
No 94
>PF15050 SCIMP: SCIMP protein
Probab=51.61 E-value=2.4 Score=34.38 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHhhhhccEEEEEEEEecccccccc
Q 046382 646 IGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYR 688 (691)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 688 (691)
+++..++|+..+|..+...-.+.++- +.....|++|.|+
T Consensus 21 ~~lglIlyCvcR~~lRqGkkweiakp----~k~~~rdeEkmYE 59 (133)
T PF15050_consen 21 VVLGLILYCVCRWQLRQGKKWEIAKP----LKQKQRDEEKMYE 59 (133)
T ss_pred HHHHHHHHHHHHHHHHccccceeccc----hhhhcccHHHHHH
Confidence 34556667666776655443333311 2233456677776
No 95
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=48.90 E-value=6.9 Score=26.85 Aligned_cols=11 Identities=45% Similarity=0.903 Sum_probs=9.5
Q ss_pred CCCCCCCCCCC
Q 046382 594 NPFLCGKPLSK 604 (691)
Q Consensus 594 Np~~c~~~l~~ 604 (691)
|||.|+|.+.+
T Consensus 1 NP~~CdC~l~~ 11 (51)
T smart00082 1 NPFICDCELRW 11 (51)
T ss_pred CCccCcCCchH
Confidence 89999998764
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.71 E-value=13 Score=39.54 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=10.7
Q ss_pred cCCCCCCEEeCCCCCC
Q 046382 16 MHLISMEKLILSNNHF 31 (691)
Q Consensus 16 ~~l~~L~~L~Ls~~~~ 31 (691)
.+.+.+..++|++|++
T Consensus 215 ~n~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRL 230 (585)
T ss_pred cCCcceeeeecccchh
Confidence 3566677777777774
No 97
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=38.69 E-value=13 Score=35.72 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=17.4
Q ss_pred eeeeehhhhhHHHHHHHhhhhhhHHHH
Q 046382 636 TFTVSYGIVIIGIIGVLYINPYWRRRW 662 (691)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (691)
.+++.|.++++|+++++|++.|.||+.
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455566667778888877766643
No 98
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.27 E-value=12 Score=37.16 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=10.1
Q ss_pred ehhhhhHHHHHHHhhhhhhH
Q 046382 640 SYGIVIIGIIGVLYINPYWR 659 (691)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~ 659 (691)
++++++++++++.++.||+|
T Consensus 264 aIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556555
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=36.85 E-value=9.6 Score=32.79 Aligned_cols=7 Identities=14% Similarity=-0.187 Sum_probs=2.7
Q ss_pred hhhhhhH
Q 046382 653 YINPYWR 659 (691)
Q Consensus 653 ~~~~~~~ 659 (691)
+++++||
T Consensus 80 ~~~kRkr 86 (146)
T PF15102_consen 80 IYYKRKR 86 (146)
T ss_pred eEEeecc
Confidence 3334443
No 100
>PTZ00370 STEVOR; Provisional
Probab=35.69 E-value=17 Score=35.10 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=17.3
Q ss_pred eeeeehhhhhHHHHHHHhhhhhhHHHH
Q 046382 636 TFTVSYGIVIIGIIGVLYINPYWRRRW 662 (691)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (691)
.+++.|.++++|+++++|++.|.||+.
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455566667788888877666543
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.04 E-value=24 Score=45.50 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=24.8
Q ss_pred EcCCCeeeeccchhhhcccCCCeEeCCCCcCC
Q 046382 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLT 526 (691)
Q Consensus 495 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 526 (691)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666677778888888888888774
No 102
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=33.57 E-value=63 Score=20.86 Aligned_cols=6 Identities=17% Similarity=0.595 Sum_probs=2.7
Q ss_pred hhhhHH
Q 046382 655 NPYWRR 660 (691)
Q Consensus 655 ~~~~~~ 660 (691)
+|+|..
T Consensus 30 YRKw~a 35 (43)
T PF08114_consen 30 YRKWQA 35 (43)
T ss_pred HHHHHH
Confidence 345543
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.42 E-value=14 Score=30.96 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=3.0
Q ss_pred ehhhhhHH
Q 046382 640 SYGIVIIG 647 (691)
Q Consensus 640 ~~~~~~~~ 647 (691)
++++++++
T Consensus 72 gv~aGvIg 79 (122)
T PF01102_consen 72 GVMAGVIG 79 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 104
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=31.93 E-value=50 Score=30.54 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=8.5
Q ss_pred eeeeeeehhhhhHHHHHHHhh
Q 046382 634 LITFTVSYGIVIIGIIGVLYI 654 (691)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~ 654 (691)
++.++.+++++++++++++++
T Consensus 40 ~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 40 MIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeecchhhhHHHHHHHHHH
Confidence 333344444433344444443
No 105
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=26.77 E-value=21 Score=30.95 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=5.0
Q ss_pred eeeeeeeehhhh
Q 046382 633 FLITFTVSYGIV 644 (691)
Q Consensus 633 ~~~~~~~~~~~~ 644 (691)
+.+++++++.++
T Consensus 52 IGvVVGVGg~il 63 (154)
T PF04478_consen 52 IGVVVGVGGPIL 63 (154)
T ss_pred EEEEecccHHHH
Confidence 334444444333
No 106
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=23.51 E-value=25 Score=29.32 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=15.6
Q ss_pred eehhhhhHHHHHHHhhhhhhHHHHHHH
Q 046382 639 VSYGIVIIGIIGVLYINPYWRRRWFYL 665 (691)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (691)
+++.+++++.++.+++.+|.|++++-+
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~ 133 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPL 133 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCch
Confidence 344444455566666667777766543
No 107
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.15 E-value=1.2e+02 Score=27.70 Aligned_cols=8 Identities=25% Similarity=0.492 Sum_probs=2.9
Q ss_pred CCCCCCCC
Q 046382 600 KPLSKSCN 607 (691)
Q Consensus 600 ~~l~~~c~ 607 (691)
|.+.--|.
T Consensus 33 C~~ryCC~ 40 (179)
T PF13908_consen 33 CSLRYCCS 40 (179)
T ss_pred ccCcchhh
Confidence 33333333
Done!