Query 046382
Match_columns 691
No_of_seqs 741 out of 5068
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 20:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.6E-69 1.9E-73 614.2 41.6 604 2-614 106-756 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.6E-63 1.9E-67 564.7 38.4 554 4-601 85-721 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-59 6.7E-64 540.9 34.3 527 2-604 10-567 (844)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-57 1.2E-61 512.5 44.6 561 2-604 10-630 (680)
5 3t6q_A CD180 antigen; protein- 100.0 6.3E-55 2.2E-59 487.6 41.6 531 2-603 18-566 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-53 5.6E-58 482.6 47.1 531 22-596 7-596 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-54 6E-59 484.0 36.4 530 2-604 17-565 (606)
8 3t6q_A CD180 antigen; protein- 100.0 6E-53 2.1E-57 471.6 40.2 509 1-578 38-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-52 7.1E-57 482.3 35.1 537 1-610 29-592 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-50 1.2E-54 449.3 36.6 506 1-579 37-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 1.3E-48 4.4E-53 433.6 34.8 489 46-603 29-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 3.1E-48 1.1E-52 430.5 35.7 507 3-581 14-538 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-46 3.8E-51 415.9 34.6 476 2-575 11-511 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-46 1.9E-50 410.3 34.3 464 1-554 31-514 (549)
15 4eco_A Uncharacterized protein 100.0 6.2E-48 2.1E-52 430.3 16.8 435 70-576 82-602 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-46 7.9E-51 410.1 26.9 456 72-604 3-488 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 3.7E-46 1.3E-50 421.8 26.5 446 70-601 324-870 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-44 3.9E-49 407.6 37.8 528 5-604 40-587 (635)
19 4eco_A Uncharacterized protein 100.0 3.4E-47 1.2E-51 424.3 16.2 443 93-598 81-601 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 8.1E-45 2.8E-49 397.9 24.6 433 70-576 22-483 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 1E-43 3.5E-48 401.9 27.6 354 134-574 481-864 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.5E-43 2.2E-47 385.8 27.1 457 70-603 32-516 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 6.5E-41 2.2E-45 377.0 34.4 505 1-576 57-582 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 1.3E-40 4.4E-45 358.3 29.7 370 145-601 13-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-41 6.8E-46 374.0 23.1 458 44-578 30-514 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 2.3E-40 7.8E-45 356.4 28.9 383 97-579 14-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 6.5E-39 2.2E-43 341.7 26.1 287 69-396 11-310 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.6E-38 5.5E-43 338.7 23.9 392 92-599 10-431 (454)
29 1o6v_A Internalin A; bacterial 100.0 5.4E-36 1.8E-40 322.4 35.8 345 92-551 45-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 4.5E-36 1.5E-40 323.0 34.3 356 104-576 35-390 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 5E-37 1.7E-41 332.1 24.6 345 195-601 15-360 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-37 1.4E-41 328.1 23.3 366 78-579 27-392 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 2.6E-36 8.9E-41 326.5 26.3 325 219-604 14-340 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1E-34 3.5E-39 309.5 29.0 356 68-559 41-396 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 4.7E-35 1.6E-39 307.8 25.9 335 166-601 44-378 (390)
36 3oja_B Anopheles plasmodium-re 100.0 5.9E-34 2E-38 315.8 26.3 335 166-601 50-384 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 2.7E-33 9.1E-38 294.5 28.9 264 142-420 45-308 (390)
38 4fmz_A Internalin; leucine ric 100.0 6.6E-33 2.3E-37 286.8 30.1 304 166-574 43-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 9.7E-33 3.3E-37 285.6 29.5 306 90-420 41-346 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-34 2.2E-38 288.8 17.7 258 265-606 51-312 (313)
41 3oja_B Anopheles plasmodium-re 100.0 4.6E-33 1.6E-37 308.7 25.9 313 190-601 50-362 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 4.8E-35 1.6E-39 315.5 6.0 379 142-574 3-440 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 7.4E-35 2.5E-39 314.0 1.9 391 94-556 4-446 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-30 3.8E-35 268.0 25.5 290 192-572 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 3.1E-30 1.1E-34 264.5 26.6 151 168-325 32-184 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-30 5.5E-35 266.7 24.3 245 168-423 34-280 (332)
47 1ogq_A PGIP-2, polygalacturona 100.0 8.9E-32 3E-36 273.0 14.4 252 240-575 50-306 (313)
48 1xku_A Decorin; proteoglycan, 100.0 1.2E-29 4.2E-34 260.1 28.7 247 70-328 32-279 (330)
49 3ogk_B Coronatine-insensitive 100.0 1.7E-31 5.7E-36 297.4 4.6 394 116-570 110-547 (592)
50 3ogk_B Coronatine-insensitive 100.0 5.8E-31 2E-35 293.0 5.3 412 109-576 64-528 (592)
51 3zyj_A Leucine-rich repeat-con 100.0 3.8E-28 1.3E-32 259.1 23.2 250 291-603 46-298 (440)
52 3zyi_A Leucine-rich repeat-con 100.0 9.5E-28 3.3E-32 257.0 23.8 249 267-602 57-308 (452)
53 2z80_A TOLL-like receptor 2, v 100.0 4.5E-28 1.5E-32 250.8 19.6 202 191-396 31-235 (353)
54 2z80_A TOLL-like receptor 2, v 100.0 1.5E-28 5.2E-33 254.4 15.7 277 239-576 30-316 (353)
55 2z66_A Variable lymphocyte rec 100.0 5.6E-28 1.9E-32 244.9 19.2 252 268-602 11-266 (306)
56 2p1m_B Transport inhibitor res 100.0 4E-30 1.4E-34 286.4 1.7 398 115-573 102-543 (594)
57 2z66_A Variable lymphocyte rec 99.9 3.8E-27 1.3E-31 238.8 20.1 247 145-421 10-262 (306)
58 1ozn_A Reticulon 4 receptor; N 99.9 1E-26 3.5E-31 233.0 20.6 222 195-420 15-238 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-27 1.3E-31 236.0 17.6 204 313-574 33-238 (285)
60 3zyi_A Leucine-rich repeat-con 99.9 1.8E-26 6E-31 247.2 23.4 247 241-550 55-303 (452)
61 2p1m_B Transport inhibitor res 99.9 3.4E-29 1.2E-33 278.9 0.5 396 70-550 106-544 (594)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-28 8E-33 248.5 6.3 264 244-578 14-280 (317)
63 3zyj_A Leucine-rich repeat-con 99.9 9.8E-26 3.4E-30 240.5 23.2 249 143-420 44-292 (440)
64 4fcg_A Uncharacterized protein 99.9 5.6E-26 1.9E-30 231.6 20.3 226 92-325 80-314 (328)
65 4fcg_A Uncharacterized protein 99.9 1E-25 3.4E-30 229.8 21.4 225 70-301 82-314 (328)
66 3oja_A Leucine-rich immune mol 99.9 1.4E-26 4.9E-31 249.0 14.1 244 289-602 35-287 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-27 6.1E-32 242.0 6.4 255 146-415 14-270 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-25 1.3E-29 242.4 25.2 267 168-560 41-307 (622)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.6E-29 238.9 28.0 262 217-579 41-302 (622)
70 1wwl_A Monocyte differentiatio 99.9 2.5E-27 8.4E-32 240.4 4.9 248 263-575 42-310 (312)
71 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4.1E-31 235.4 8.9 202 189-396 93-309 (312)
72 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.5E-31 248.0 9.3 236 263-569 33-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 7.6E-25 2.6E-29 218.2 20.0 208 335-601 28-241 (276)
74 1p9a_G Platelet glycoprotein I 99.9 9.2E-25 3.1E-29 218.3 19.4 183 359-602 31-213 (290)
75 2o6q_A Variable lymphocyte rec 99.9 2.8E-24 9.7E-29 213.1 20.9 205 313-601 17-222 (270)
76 2o6q_A Variable lymphocyte rec 99.9 2.3E-23 7.7E-28 206.6 21.8 203 288-575 16-219 (270)
77 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.3E-28 208.7 20.2 222 147-373 12-238 (276)
78 1p9a_G Platelet glycoprotein I 99.9 7.5E-23 2.6E-27 204.5 20.7 204 308-575 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 4.5E-23 1.5E-27 204.6 14.3 203 309-579 38-240 (272)
80 3goz_A Leucine-rich repeat-con 99.9 1.1E-23 3.6E-28 218.4 6.8 259 245-576 3-299 (362)
81 3rfs_A Internalin B, repeat mo 99.9 2.4E-22 8.1E-27 199.4 15.1 179 91-276 39-217 (272)
82 4glp_A Monocyte differentiatio 99.9 1.3E-22 4.6E-27 205.4 11.7 131 289-419 65-209 (310)
83 3m19_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 191.9 17.6 184 335-579 14-197 (251)
84 1h6u_A Internalin H; cell adhe 99.9 4.6E-22 1.6E-26 200.9 14.3 82 488-575 150-231 (308)
85 3m19_A Variable lymphocyte rec 99.9 2.2E-21 7.4E-26 190.0 18.7 180 313-552 15-194 (251)
86 2xwt_C Thyrotropin receptor; s 99.9 5.4E-22 1.9E-26 192.9 14.2 197 335-594 31-236 (239)
87 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.8E-28 220.6 2.2 251 256-578 24-320 (386)
88 2ast_B S-phase kinase-associat 99.9 1.5E-22 5E-27 208.1 9.4 252 95-356 49-314 (336)
89 3goz_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 206.8 12.5 269 74-378 3-303 (362)
90 2ca6_A RAN GTPase-activating p 99.9 2.9E-22 1E-26 209.8 9.6 239 86-325 25-316 (386)
91 2ast_B S-phase kinase-associat 99.9 6.6E-22 2.3E-26 203.2 11.2 254 70-332 48-313 (336)
92 4glp_A Monocyte differentiatio 99.9 4.8E-21 1.7E-25 193.9 16.0 202 142-348 64-285 (310)
93 2xwt_C Thyrotropin receptor; s 99.8 6E-21 2.1E-25 185.5 14.8 178 119-301 32-218 (239)
94 1h6u_A Internalin H; cell adhe 99.8 2.6E-20 9E-25 187.9 19.5 192 116-325 39-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5E-24 186.2 17.5 242 145-417 12-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.8E-24 185.8 17.3 200 96-301 12-215 (350)
97 2v9t_B SLIT homolog 2 protein 99.8 8.2E-20 2.8E-24 174.4 12.8 114 490-603 57-171 (220)
98 2xot_A Amphoterin-induced prot 99.8 4.3E-20 1.5E-24 191.0 11.6 115 488-602 87-207 (361)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-19 1.5E-23 169.5 14.4 153 362-575 14-167 (220)
100 2o6s_A Variable lymphocyte rec 99.8 4.1E-19 1.4E-23 168.5 14.0 161 118-287 28-188 (208)
101 2o6s_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 167.6 13.9 156 359-579 28-183 (208)
102 3cvr_A Invasion plasmid antige 99.8 7.3E-19 2.5E-23 190.2 16.6 114 289-420 60-173 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.8E-23 166.6 14.8 153 362-575 14-166 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.6E-23 166.0 14.2 116 488-603 56-172 (220)
105 3e6j_A Variable lymphocyte rec 99.8 2.4E-18 8.1E-23 165.5 15.6 154 361-576 21-174 (229)
106 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.5E-23 188.2 14.9 134 265-420 60-193 (571)
107 2xot_A Amphoterin-induced prot 99.8 1.5E-18 5.1E-23 179.4 13.5 176 315-550 21-202 (361)
108 1h6t_A Internalin B; cell adhe 99.8 4.9E-18 1.7E-22 169.7 15.8 82 488-575 133-214 (291)
109 3e6j_A Variable lymphocyte rec 99.8 7.5E-18 2.6E-22 162.0 15.5 81 337-420 21-101 (229)
110 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 4.7E-22 166.4 15.7 171 115-325 43-213 (291)
111 1m9s_A Internalin B; cell inva 99.7 9.1E-18 3.1E-22 183.8 13.5 58 489-550 153-210 (605)
112 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.6E-22 156.3 12.3 154 356-575 41-195 (197)
113 1m9s_A Internalin B; cell inva 99.7 8.2E-17 2.8E-21 176.3 16.3 190 119-326 22-211 (605)
114 3sb4_A Hypothetical leucine ri 99.7 1.1E-17 3.9E-22 170.6 8.9 285 92-413 24-327 (329)
115 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.5E-22 162.2 9.8 170 334-576 18-187 (263)
116 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.1E-21 148.6 15.4 153 90-253 41-194 (197)
117 2wfh_A SLIT homolog 2 protein 99.7 4.4E-17 1.5E-21 151.8 11.0 116 488-604 30-146 (193)
118 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.3E-24 195.6 -5.8 79 488-568 485-567 (567)
119 1w8a_A SLIT protein; signaling 99.7 3.4E-17 1.2E-21 152.7 9.2 89 488-576 53-141 (192)
120 3sb4_A Hypothetical leucine ri 99.7 1.3E-16 4.4E-21 162.7 12.8 210 215-430 100-320 (329)
121 1xeu_A Internalin C; cellular 99.7 8.8E-17 3E-21 157.9 10.7 166 70-253 20-185 (263)
122 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.7E-21 149.2 10.6 132 362-554 11-143 (192)
123 1dce_A Protein (RAB geranylger 99.6 1.4E-17 4.9E-22 181.2 0.2 183 139-329 346-550 (567)
124 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 139.3 11.6 88 488-575 70-161 (168)
125 4fdw_A Leucine rich hypothetic 99.6 1.4E-14 4.7E-19 150.8 21.1 264 117-419 112-382 (401)
126 2ell_A Acidic leucine-rich nuc 99.6 9.7E-16 3.3E-20 139.6 10.8 138 357-555 22-164 (168)
127 4b8c_D Glucose-repressible alc 99.6 1.2E-16 4.1E-21 179.6 4.8 131 295-429 208-338 (727)
128 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 5E-20 135.4 10.3 128 383-570 17-149 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 4.2E-15 1.5E-19 138.3 13.8 88 488-575 53-140 (193)
130 4fdw_A Leucine rich hypothetic 99.6 1.7E-14 6E-19 149.9 19.8 269 240-573 113-382 (401)
131 4b8c_D Glucose-repressible alc 99.6 2.3E-16 7.8E-21 177.4 5.5 176 333-576 222-406 (727)
132 2je0_A Acidic leucine-rich nuc 99.6 1.9E-15 6.3E-20 134.7 10.1 129 358-546 16-149 (149)
133 4fs7_A Uncharacterized protein 99.6 2.3E-14 7.9E-19 149.9 20.1 334 130-565 59-392 (394)
134 2o6r_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 136.5 11.8 114 488-601 27-141 (177)
135 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 133.8 12.5 91 488-578 51-141 (177)
136 4fs7_A Uncharacterized protein 99.6 1.4E-13 5E-18 143.8 20.7 154 86-249 64-217 (394)
137 3g39_A Variable lymphocyte rec 99.5 2.1E-14 7.1E-19 130.6 9.8 109 490-601 10-119 (170)
138 1ds9_A Outer arm dynein; leuci 99.5 3.5E-16 1.2E-20 146.8 -3.8 154 357-575 16-186 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.8E-14 1.6E-18 129.3 10.4 84 489-574 64-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 5.1E-14 1.7E-18 129.1 10.2 134 89-229 15-153 (176)
141 2r9u_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 128.2 9.9 107 492-601 15-122 (174)
142 3g39_A Variable lymphocyte rec 99.4 2.7E-13 9.3E-18 123.2 10.5 91 488-578 29-119 (170)
143 2r9u_A Variable lymphocyte rec 99.4 6.9E-13 2.3E-17 120.9 10.7 91 488-578 32-122 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 6.4E-15 2.2E-19 138.1 -3.6 130 92-229 17-153 (198)
145 4gt6_A Cell surface protein; l 99.4 4E-11 1.4E-15 125.2 23.4 315 88-419 58-390 (394)
146 2ifg_A High affinity nerve gro 99.4 9.2E-13 3.1E-17 135.3 9.7 110 492-603 11-122 (347)
147 4gt6_A Cell surface protein; l 99.4 8.3E-11 2.8E-15 122.8 23.6 334 157-573 53-390 (394)
148 3un9_A NLR family member X1; l 99.3 1.7E-13 5.8E-18 141.1 -0.0 138 118-255 101-254 (372)
149 3un9_A NLR family member X1; l 99.3 2.4E-13 8.2E-18 139.9 0.5 168 117-304 71-255 (372)
150 2ifg_A High affinity nerve gro 99.2 1.7E-11 6E-16 125.8 8.0 88 488-576 30-118 (347)
151 4h09_A Hypothetical leucine ri 99.2 3.8E-09 1.3E-13 109.6 23.5 287 89-391 42-341 (379)
152 4h09_A Hypothetical leucine ri 99.1 1.8E-08 6.2E-13 104.5 24.2 71 488-560 285-355 (379)
153 2ra8_A Uncharacterized protein 98.9 6.2E-09 2.1E-13 106.0 10.8 202 70-299 108-341 (362)
154 2ra8_A Uncharacterized protein 98.9 5.9E-10 2E-14 113.5 3.1 156 67-227 170-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 7E-08 2.4E-12 88.5 3.7 60 490-549 94-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 8.8E-08 3E-12 87.8 4.3 86 489-574 65-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 3.4E-07 1.2E-11 88.1 6.5 64 488-553 169-236 (267)
158 3rw6_A Nuclear RNA export fact 98.3 3E-07 1E-11 88.5 4.1 89 489-579 141-238 (267)
159 3e4g_A ATP synthase subunit S, 98.2 8.8E-07 3E-11 78.8 3.4 86 69-155 61-153 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.7E-11 77.5 2.9 84 489-572 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 4.4E-05 1.5E-09 64.8 4.7 62 517-603 12-74 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00028 9.7E-09 63.9 4.0 14 115-128 38-51 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0005 1.7E-08 62.3 4.5 38 167-204 41-83 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0023 8E-08 54.0 6.0 57 492-550 11-68 (130)
165 2lz0_A Uncharacterized protein 53.1 26 0.0009 27.2 5.7 47 346-393 7-53 (100)
166 2lz0_A Uncharacterized protein 40.2 34 0.0012 26.5 4.4 48 369-417 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-69 Score=614.17 Aligned_cols=604 Identities=30% Similarity=0.425 Sum_probs=474.0
Q ss_pred ccccccccc-ccc--cccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCcccccc-----------------
Q 046382 2 SLTINLLKT-SLI--SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESH----------------- 61 (691)
Q Consensus 2 ~l~~n~~~~-l~~--~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------------- 61 (691)
+|++|.++. +|. .++++++|++|+|++|. ..+..+...+.++++|++|+++++......
T Consensus 106 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~ 184 (768)
T 3rgz_A 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184 (768)
T ss_dssp ECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred ECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEE
Confidence 455555553 344 55666666666666655 333333222244555555555443221100
Q ss_pred --------ccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc
Q 046382 62 --------YNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS 133 (691)
Q Consensus 62 --------~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 133 (691)
......+.+|++|++++|.+.+..|. ++++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+.
T Consensus 185 Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 185 ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGP 262 (768)
T ss_dssp CCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEES
T ss_pred CCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCc
Confidence 01113445777888888877776666 788888888888888887776765 47888888888888888776
Q ss_pred CCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhh
Q 046382 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213 (691)
Q Consensus 134 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 213 (691)
.|.. .+++|++|++++|++++.+|..++..+++|++|++++|.+++..|..++++++|++|++++|.+++.+|...+.
T Consensus 263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 6654 78888999999998888888888776689999999999999999999999999999999999998889988778
Q ss_pred cCCCCCEEEcccccCCccCcccccCCC-CCCEEEccCCcCcccCCccccC--CCCCCEEEccCCcCCCcchhhhhcCCCC
Q 046382 214 GCFSLKILALSNNSLQGHIFSKKFNLT-NLMRLQLDGNKFIGEIPESLSK--CYLLGGLYLSDNHLSGEIPRWLGNLSAL 290 (691)
Q Consensus 214 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L 290 (691)
.+++|++|++++|.+++..+..+..++ +|+.|++++|.+.+..+..+.. +++|+.|++++|.+++.+|..+..+++|
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 899999999999999988888888887 9999999999999888877776 7899999999999999999999999999
Q ss_pred CEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCC
Q 046382 291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369 (691)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n 369 (691)
++|++++|.+++..|..+..+++|++|++++|.+.+.++..+ .+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 999999999999999999999999999999999998887766 7899999999999999999999999999999999999
Q ss_pred CCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCC-c------ccCC
Q 046382 370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHH-E------AVAP 442 (691)
Q Consensus 370 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~-~------~~~~ 442 (691)
++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+....-..... . .+..
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998876532110000 0 0000
Q ss_pred Ccc--cccCcc--cccccccCCC----CCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccC
Q 046382 443 TSI--WCGRAS--VYISACLPSR----SAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSG 514 (691)
Q Consensus 443 ~~~--~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 514 (691)
... .|.... ..+.+..+.. ............+.... ...+ ..+++|+.|||++|+++|.+|..++.+++
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~-~~~~--~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT-SPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC-CCSC--SSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccC-chhh--hccccccEEECcCCcccccCCHHHhcccc
Confidence 000 000000 0000000000 00000000000011000 0011 22688999999999999999999999999
Q ss_pred CCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCC
Q 046382 515 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGN 594 (691)
Q Consensus 515 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~N 594 (691)
|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+.++|.++....+.||
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 046382 595 PFLCGKPLSKSCNHNGLTTV 614 (691)
Q Consensus 595 p~~c~~~l~~~c~~~~~~~~ 614 (691)
|++|+.++. .|.......|
T Consensus 738 ~~Lcg~~l~-~C~~~~~~~~ 756 (768)
T 3rgz_A 738 PGLCGYPLP-RCDPSNADGY 756 (768)
T ss_dssp TEEESTTSC-CCCSCC----
T ss_pred chhcCCCCc-CCCCCccCCC
Confidence 999999987 8877665555
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-63 Score=564.65 Aligned_cols=554 Identities=29% Similarity=0.365 Sum_probs=349.6
Q ss_pred cccccccccccccCCCCCCEEeCCCCCCccccCC-cccccCCCCCcEEeCCCCccccccccCC-CCCccccEEEecCCCC
Q 046382 4 TINLLKTSLISLMHLISMEKLILSNNHFFQIPIS-LEPLFNLSKLKTFDGEICAETESHYNSL-TPKFQLTSISLSGYID 81 (691)
Q Consensus 4 ~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~ 81 (691)
+.+.+..+|+.++++++|++|+|++|. ..+..+ ...+.++++|++|+++++.........+ ..+.+|++|++++|.+
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 344444455566666666666666666 333222 1246666666666666643321111111 3444666666666666
Q ss_pred CCCcchh---hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccC
Q 046382 82 GGTFPKF---LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI 158 (691)
Q Consensus 82 ~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 158 (691)
++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+..|. +..+++|++|++++|.+++.+
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 6555544 55666666666666666544442 4566666666666666555554 666666666666666666555
Q ss_pred chhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccC
Q 046382 159 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN 238 (691)
Q Consensus 159 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 238 (691)
|..+.. +++|++|++++|.+++..|.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+++..+..+..
T Consensus 240 ~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 240 SRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred cHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 554443 566666666666666555543 56666666666666665666655444466666666666666666666666
Q ss_pred CCCCCEEEccCCcCcccCCcc-ccCCCCCCEEEccCCcCCCcchhhhhcCC-CCCEEecCCCccCCCcchhhcC--CCCC
Q 046382 239 LTNLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEIPRWLGNLS-ALEGIRMPNNNLEGPIPIEFCQ--LSAL 314 (691)
Q Consensus 239 l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L 314 (691)
+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+++.+|..+..++ +|++|++++|.+.+..+..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 666666666666666555543 56666666666666666655666665555 6666666666665555554444 5556
Q ss_pred CEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC
Q 046382 315 KILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393 (691)
Q Consensus 315 ~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n 393 (691)
++|++++|.+.+.++..+ .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 666666666655555444 4566666666666666666666666666666666666666666666666666666666666
Q ss_pred cCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEE
Q 046382 394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQ 473 (691)
Q Consensus 394 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (691)
++++..|..+..+++|++|++++|++++.+|..+.... ....+.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~------------------------------------~L~~L~ 520 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE------------------------------------NLAILK 520 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT------------------------------------TCCEEE
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC------------------------------------CCCEEE
Confidence 66666666666666666666666666666665554422 111111
Q ss_pred EEecCccceec--cccccccceEEcCCCeeeeccc---------------------------------------------
Q 046382 474 FTTKNMSYYYQ--GRILTSMSGIDLSCNKLTGEIP--------------------------------------------- 506 (691)
Q Consensus 474 ~~~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~--------------------------------------------- 506 (691)
+..+....... ...+++|+.|++++|++++.+|
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 11111111100 0124555556666555554444
Q ss_pred -------------------------hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCC
Q 046382 507 -------------------------TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN 561 (691)
Q Consensus 507 -------------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 561 (691)
..+..+++|+.|||++|++++.+|..++++++|+.|+|++|++++.+|+.+..++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 4455578899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382 562 TLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 562 ~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
+|+.|++++|+++|.+|. ...+..++.+++++|+.....|
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999999999998 5668889999999998765444
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-59 Score=540.91 Aligned_cols=527 Identities=20% Similarity=0.168 Sum_probs=437.8
Q ss_pred cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccc-cccccCCCCCccccEEEecCCC
Q 046382 2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAET-ESHYNSLTPKFQLTSISLSGYI 80 (691)
Q Consensus 2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~ 80 (691)
+.+++.++.+|. -.++|++|+|++|.+.... ...+.++++|++|+++++... ......+..+.+|++|+|++|.
T Consensus 10 dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 10 FYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EESCCCSSCCCS---SCTTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EccCCCCCCCCC---CCCCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456788999996 5689999999999954332 256899999999999997432 2223345667799999999999
Q ss_pred CCCCcchhhcCCCCCCEEEccCCCCcccCchH-HhhcCCCCCEEEccCCcccccCC-cCccCCCccCEEEccCCcCcccC
Q 046382 81 DGGTFPKFLYHQHDLKNADLSHLNLSGQFPNW-LLENNTNLVMLLLANNSLFGSFR-MPIHSHQNLATLDVSNNFFHGHI 158 (691)
Q Consensus 81 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~ 158 (691)
+.+..|..+.++++|++|+|++|.+++.+|.. .++++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 99888999999999999999999998766543 35899999999999999987755 56899999999999999998766
Q ss_pred chhhhhCC--CCCcEEEccCCcccccCchhhhCCCC------CCEEeccccccccccchhHhhcC--CCCCEEEcccc--
Q 046382 159 PVEIGTYL--PGLMDLNLSRNAFNGSIPSSFADMKM------LERLDISDNQLTGEIPERMATGC--FSLKILALSNN-- 226 (691)
Q Consensus 159 ~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n-- 226 (691)
+..+.. + ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++.++..+...+ .+++.+.++.+
T Consensus 165 ~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 766654 4 79999999999999888877776665 99999999998877777665433 56888887743
Q ss_pred -------cCCccCcccccCC--CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCC
Q 046382 227 -------SLQGHIFSKKFNL--TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297 (691)
Q Consensus 227 -------~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 297 (691)
.+.......+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 3333333444443 7899999999999988889999999999999999999988888999999999999999
Q ss_pred CccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc
Q 046382 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP 376 (691)
Q Consensus 298 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 376 (691)
|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence 99998888899999999999999999987777666 689999999999999854 33889999999999998 445
Q ss_pred hhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccc
Q 046382 377 NRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYIS 455 (691)
Q Consensus 377 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 455 (691)
.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..+....
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------- 447 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP--------------------------- 447 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------------------
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------------------
Confidence 43 5689999999999985432 2356889999999999999743322100
Q ss_pred cccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeee-----eccchhhhcccCCCeEeCCCCcCCcccc
Q 046382 456 ACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT-----GEIPTQIGYLSGIHALNLSHNNLTGTIP 530 (691)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 530 (691)
..+++|+.|+|++|.++ +..+..|..+++|++|+|++|++++..|
T Consensus 448 ------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 448 ------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp ------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred ------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 01578999999999997 4455678899999999999999999999
Q ss_pred hhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCC
Q 046382 531 TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604 (691)
Q Consensus 531 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~ 604 (691)
..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+..++++||||.|+|++.+
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELST 567 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCCS
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccHH
Confidence 9999999999999999999987777766 89999999999999998864 5688889999999999998753
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-57 Score=512.55 Aligned_cols=561 Identities=20% Similarity=0.161 Sum_probs=437.1
Q ss_pred cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382 2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID 81 (691)
Q Consensus 2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 81 (691)
+.+++.++.+|..+. +++++|+|++|.+... +...+.++++|++|+++++.........+..+.+|++|++++|.+
T Consensus 10 ~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 10 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp ECCSSCCSSCCSCSC--TTCSEEECCSSCCCCC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred ECCCCCccccccccC--CCCcEEECCCCCCCCc--CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 567788889987765 7899999999984332 335688899999999988554332222233455899999999988
Q ss_pred CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchh
Q 046382 82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE 161 (691)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 161 (691)
++..+..++++++|++|++++|.+.+ ++...|+++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 87666678899999999999998874 44333588999999999999988888888888999999999999988444443
Q ss_pred hh-hCCCCCcEEEccCCcccccCchhhhCC---------------------------CCCCEEeccccccccccchhHhh
Q 046382 162 IG-TYLPGLMDLNLSRNAFNGSIPSSFADM---------------------------KMLERLDISDNQLTGEIPERMAT 213 (691)
Q Consensus 162 ~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~ 213 (691)
+. ..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..|.. +.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT-TG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH-hh
Confidence 32 125789999999998887777766544 56778888888888544443 35
Q ss_pred cCC--CCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCC-----cch----h
Q 046382 214 GCF--SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-----EIP----R 282 (691)
Q Consensus 214 ~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~~----~ 282 (691)
+++ +|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .+| .
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 554 49999999999998888888899999999999999998888889999999999998875543 122 2
Q ss_pred hhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcc--cCCCCC---CCCcccEEEccCCccccccccccCC
Q 046382 283 WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG--TLPSCF---SPAHIEQVHLSKNKIEGRLESIIHD 357 (691)
Q Consensus 283 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~---~~~~L~~L~l~~n~i~~~~~~~~~~ 357 (691)
.+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.. .....+ ..++|+.|++++|++++..+..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 67788999999999999998888889999999999999987532 222222 2368999999999999888888999
Q ss_pred CCCccEEeccCCCCCCCcc-hhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC--CCCChhhhhccccC
Q 046382 358 SPYLVTLDLSYNRLHGSIP-NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS--GHIPSCLVNTALSG 434 (691)
Q Consensus 358 ~~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~~~l~~ 434 (691)
+++|+.|++++|.+++.++ ..+..+++|++|++++|++.+..+..|..+++|+.|++++|.+. +.+|..+....
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~--- 480 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR--- 480 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT---
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC---
Confidence 9999999999999876554 67888999999999999998888888888999999999998876 34555444322
Q ss_pred CCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceec--cccccccceEEcCCCeeeeccc------
Q 046382 435 GHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQ--GRILTSMSGIDLSCNKLTGEIP------ 506 (691)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~------ 506 (691)
....+.+..+....... ...+++|++|++++|++++..+
T Consensus 481 ---------------------------------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 481 ---------------------------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527 (680)
T ss_dssp ---------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred ---------------------------------CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence 11111111111111111 0227899999999999986422
Q ss_pred --hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCC-C-C
Q 046382 507 --TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-A-Q 582 (691)
Q Consensus 507 --~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~-~ 582 (691)
..+..+++|++|+|++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|.. . .
T Consensus 528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607 (680)
T ss_dssp CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence 23788999999999999999666678999999999999999999888888899999999999999999887763 2 5
Q ss_pred CCCcCcCcccCCCCCCCCCC-CC
Q 046382 583 FSTFEEDSYEGNPFLCGKPL-SK 604 (691)
Q Consensus 583 ~~~~~~~~~~~Np~~c~~~l-~~ 604 (691)
+..++.++++||||.|+|+. .+
T Consensus 608 ~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 608 FRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp HTTCSEEECTTCCCCBCCCCCSS
T ss_pred ccccCEEEccCCCcccCCccHHH
Confidence 77899999999999999985 44
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.3e-55 Score=487.59 Aligned_cols=531 Identities=21% Similarity=0.196 Sum_probs=430.9
Q ss_pred cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382 2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID 81 (691)
Q Consensus 2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 81 (691)
+.++..++++|..+.. ++++|+|++|.+...+ ...+.++++|++|+++++.........+..+.+|++|++++|.+
T Consensus 18 ~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 18 NCENLGLNEIPGTLPN--STECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp ECTTSCCSSCCTTSCT--TCCEEECTTCCCSEEC--TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcccCcCCCCC--cCcEEEccCCccCcCC--hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 4567788999987765 8999999999954432 35689999999999999766544444566777999999999999
Q ss_pred CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchh
Q 046382 82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE 161 (691)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 161 (691)
.+..|..++++++|++|++++|.+++..+.. ++++++|++|++++|++.+.....+..+++|++|++++|.+++..+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 8888888999999999999999998433333 588999999999999998765455666999999999999998444444
Q ss_pred hhhCCCCCc--EEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCc-----cCcc
Q 046382 162 IGTYLPGLM--DLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-----HIFS 234 (691)
Q Consensus 162 ~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~ 234 (691)
+ ..+++|+ +|++++|.+++..|..+.. .+|++|++++|.. ++.. +.++.+++...+....+.. ....
T Consensus 173 ~-~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~-~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 173 M-SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVI-FKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp H-HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHH-HHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred h-hhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHH-hhhccccchhheechhhccccccccChh
Confidence 4 4588898 8999999999777776654 6899999998862 3332 3445555544443332221 1222
Q ss_pred cccCCC--CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCC
Q 046382 235 KKFNLT--NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312 (691)
Q Consensus 235 ~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 312 (691)
.+..+. +|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence 233332 7899999999998887888999999999999999998 6777888899999999999999877788899999
Q ss_pred CCCEEEccCCcCcccCCCC-C-CCCcccEEEccCCcccccc--ccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEE
Q 046382 313 ALKILDLSNNSIFGTLPSC-F-SPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL 388 (691)
Q Consensus 313 ~L~~L~L~~n~i~~~~~~~-~-~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 388 (691)
+|++|++++|.+.+..+.. + .+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 9999999999887555443 3 7899999999999998776 6778899999999999999988888889999999999
Q ss_pred ecccCcCcccCCc-CCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382 389 LLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG 467 (691)
Q Consensus 389 ~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (691)
++++|++++..+. .+..+++|++|++++|.+.+..|..+..
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------- 447 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-------------------------------------- 447 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--------------------------------------
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC--------------------------------------
Confidence 9999999876554 4889999999999999998766655433
Q ss_pred CcccEEEEecCccceeccccccccceEEcCCCeeeec---cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeC
Q 046382 468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE---IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL 544 (691)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 544 (691)
+++|++|++++|++++. .+..+..+++|++|++++|++++..|..|.++++|++|+|
T Consensus 448 --------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 448 --------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp --------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred --------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 67899999999999863 3367899999999999999999888999999999999999
Q ss_pred CCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382 545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS 603 (691)
Q Consensus 545 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~ 603 (691)
++|++++..|+.+..+++| .|++++|++++.+|. ...++.++.++++||||.|+|+..
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 9999999999999999999 999999999988776 355678899999999999999754
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-53 Score=482.61 Aligned_cols=531 Identities=21% Similarity=0.171 Sum_probs=428.9
Q ss_pred CEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEcc
Q 046382 22 EKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS 101 (691)
Q Consensus 22 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 101 (691)
+.++.+++.+...+.. +. +++++|+++++.........+..+.+|++|++++|.+++..|..++++++|++|+++
T Consensus 7 ~~~~cs~~~L~~ip~~---~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDD---LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCSSCCSC---SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CeeECCCCCccccccc---cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 6788998886555432 22 789999999965443333334556699999999999999989999999999999999
Q ss_pred CCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccc
Q 046382 102 HLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG 181 (691)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~ 181 (691)
+|.++ .+|...|+++++|++|++++|++.+..+..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++
T Consensus 82 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 82 HNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQA 159 (680)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCC
T ss_pred CCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccc
Confidence 99998 6776557999999999999999988888889999999999999999995555544 458999999999999998
Q ss_pred cCchhhh--CCCCCCEEeccccccccccchhHhhc---------------------------CCCCCEEEcccccCCccC
Q 046382 182 SIPSSFA--DMKMLERLDISDNQLTGEIPERMATG---------------------------CFSLKILALSNNSLQGHI 232 (691)
Q Consensus 182 ~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------------l~~L~~L~l~~n~l~~~~ 232 (691)
..+..+. .+++|++|++++|.+++..|. .+.. .++|+.|++++|.+.+..
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred cCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 7777665 568999999999999844443 2232 267888999999999888
Q ss_pred cccccCCCC--CCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC-----Ccc
Q 046382 233 FSKKFNLTN--LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG-----PIP 305 (691)
Q Consensus 233 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~~ 305 (691)
+..+..++. |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+ .+|
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence 888877754 9999999999998888899999999999999999998889999999999999999876542 122
Q ss_pred ----hhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCcccc--ccccccCC--CCCccEEeccCCCCCCCcc
Q 046382 306 ----IEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEG--RLESIIHD--SPYLVTLDLSYNRLHGSIP 376 (691)
Q Consensus 306 ----~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~--~~~~~~~~--~~~L~~L~ls~n~i~~~~~ 376 (691)
..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+.. .....+.. .++|+.|++++|++++..|
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 267889999999999999998777766 78999999999997542 23333333 3689999999999998888
Q ss_pred hhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccc
Q 046382 377 NRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYIS 455 (691)
Q Consensus 377 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 455 (691)
..+..+++|++|++++|++++.++ ..+..+++|++|++++|++.+..+..+....
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~------------------------ 454 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP------------------------ 454 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT------------------------
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc------------------------
Confidence 899999999999999999987665 6899999999999999998866655544322
Q ss_pred cccCCCCCCCCCCcccEEEEecCccc----eeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccc-
Q 046382 456 ACLPSRSAPPMGKEETVQFTTKNMSY----YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP- 530 (691)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p- 530 (691)
....+.+....... ...-..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+
T Consensus 455 ------------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 522 (680)
T 1ziw_A 455 ------------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522 (680)
T ss_dssp ------------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred ------------ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchh
Confidence 00111111100000 0001237899999999999998888889999999999999999986532
Q ss_pred -------hhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCC-CCCCCcCcCcccCCCC
Q 046382 531 -------TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQFSTFEEDSYEGNPF 596 (691)
Q Consensus 531 -------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~Np~ 596 (691)
..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++++..+.. ..+..++.+++++|..
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred hccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 23789999999999999999666667999999999999999999776653 5678889999998864
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-54 Score=484.02 Aligned_cols=530 Identities=17% Similarity=0.147 Sum_probs=440.0
Q ss_pred cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382 2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID 81 (691)
Q Consensus 2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 81 (691)
+.+++.++.+|..+. ++|++|+|++|.+...+ ...+.++++|++|+++++.........+..+.+|++|++++|.+
T Consensus 17 ~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 17 QCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp ECTTSCCSSCCTTSC--TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EccCCCcccCCCCCC--CCcCEEECCCCCcCEeC--hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 567888999998776 89999999999954433 24689999999999999765443334456777999999999999
Q ss_pred CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccc-cCCcCccCCCccCEEEccCCcCcccCch
Q 046382 82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPV 160 (691)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 160 (691)
++..|..++++++|++|++++|.+.+..+.. ++++++|++|++++|.+.+ ..|..+.++++|++|++++|++++..+.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 9888999999999999999999998444344 6899999999999999976 4588899999999999999999955554
Q ss_pred hhhhCCCC----CcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCcc-----
Q 046382 161 EIGTYLPG----LMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH----- 231 (691)
Q Consensus 161 ~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 231 (691)
.+.. +++ +++|++++|.+++..+..+... +|++|++++|.+++......+..++.|+.+++..+.+...
T Consensus 172 ~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 172 DLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 4433 344 4589999999997666666555 8999999999987555555668899999998876554321
Q ss_pred -CcccccCCC--CCCEEEc-cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchh
Q 046382 232 -IFSKKFNLT--NLMRLQL-DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307 (691)
Q Consensus 232 -~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 307 (691)
....+..+. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .+| .
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~ 324 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-T 324 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-C
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-c
Confidence 112222222 4566677 66777777776 8899999999999999974 45 7888999999999999994 666 4
Q ss_pred hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccccc--ccccCCCCCccEEeccCCCCCCCcchhhcCCCCc
Q 046382 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL 385 (691)
Q Consensus 308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L 385 (691)
+ .+++|++|++++|...+.. ....+++|++|++++|.+++.. +..+..+++|+.|++++|.++ ..|..+..+++|
T Consensus 325 ~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L 401 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401 (606)
T ss_dssp C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC
T ss_pred C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC
Confidence 5 8999999999999665544 4447899999999999998763 677889999999999999988 466788999999
Q ss_pred cEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCC
Q 046382 386 NYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAP 464 (691)
Q Consensus 386 ~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (691)
++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------- 446 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------------------------------- 446 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------------
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-----------------------------------
Confidence 999999999998777 68899999999999999998777765543
Q ss_pred CCCCcccEEEEecCccceeccccccccceEEcCCCeeee-ccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEe
Q 046382 465 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLD 543 (691)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 543 (691)
+++|++|++++|.+++ ..|..++.+++|++|+|++|++++..|..|.++++|++|+
T Consensus 447 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 447 -----------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp -----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -----------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 6789999999999997 4788999999999999999999999999999999999999
Q ss_pred CCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCC-CcCcCcccCCCCCCCCCCCC
Q 046382 544 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS-TFEEDSYEGNPFLCGKPLSK 604 (691)
Q Consensus 544 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~Np~~c~~~l~~ 604 (691)
|++|++++..|..+..+++|+.|++++|+++...+....++ +++.+++++|||.|+|++.+
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 99999999999999999999999999999996554455554 58999999999999998754
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6e-53 Score=471.57 Aligned_cols=509 Identities=20% Similarity=0.180 Sum_probs=432.0
Q ss_pred Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382 1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79 (691)
Q Consensus 1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 79 (691)
|+|++|.++.+ |.+|+++++|++|+|++|.+... . ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-H-EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-C-TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCcccee-C-hhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 57999999999 67999999999999999984433 2 356899999999999997654443345667779999999999
Q ss_pred CCCCCcchhhcCCCCCCEEEccCCCCccc-CchHHhhcCCCCCEEEccCCcccccCCcCccCCCccC--EEEccCCcCcc
Q 046382 80 IDGGTFPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLA--TLDVSNNFFHG 156 (691)
Q Consensus 80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L~Ls~n~i~~ 156 (691)
.+++..+..++++++|++|++++|.+.+. .|. +..+++|++|++++|.+.+..+..+..+++|+ +|++++|.+++
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred CcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 99987778899999999999999999853 344 34699999999999999988888899999999 99999999995
Q ss_pred cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccc----cccchhHhhcCC--CCCEEEcccccCCc
Q 046382 157 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLT----GEIPERMATGCF--SLKILALSNNSLQG 230 (691)
Q Consensus 157 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~--~L~~L~l~~n~l~~ 230 (691)
..| ..+. ..+|++|++++|. ..+..+..+.+++...+....+. ..++...+.++. +|+.|++++|.+++
T Consensus 194 ~~~-~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 194 IEP-GAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp ECT-TTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred cCh-hHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 444 4444 4689999999987 34555666665544443322211 134444444444 79999999999999
Q ss_pred cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcch-hhc
Q 046382 231 HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPI-EFC 309 (691)
Q Consensus 231 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~ 309 (691)
..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 88888999999999999999998 6788899999999999999999988888999999999999999998855544 588
Q ss_pred CCCCCCEEEccCCcCcccC--CCC-CCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcch-hhcCCCCc
Q 046382 310 QLSALKILDLSNNSIFGTL--PSC-FSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN-RIDRLPQL 385 (691)
Q Consensus 310 ~l~~L~~L~L~~n~i~~~~--~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~-~~~~l~~L 385 (691)
.+++|++|++++|.+.+.. +.. ..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 9999999999999998764 433 3789999999999999999899999999999999999999876554 48899999
Q ss_pred cEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC-C--hhhhhccccCCCCcccCCCcccccCcccccccccCCCC
Q 046382 386 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI-P--SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRS 462 (691)
Q Consensus 386 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (691)
++|++++|.+.+..+..+..+++|++|++++|++.+.. | ..+.
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---------------------------------- 473 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ---------------------------------- 473 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------------------
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------------------------------
Confidence 99999999999888999999999999999999997521 1 1111
Q ss_pred CCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEE
Q 046382 463 APPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESL 542 (691)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 542 (691)
.+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+.++++| .|
T Consensus 474 ------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 474 ------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp ------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred ------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 16899999999999999889999999999999999999999999999999999 99
Q ss_pred eCCCccccccCCcccccCCCCCeEEccCCcccccCC
Q 046382 543 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 578 (691)
Q Consensus 543 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 578 (691)
++++|++++..|..+..+++|+.+++++|++.+..+
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999989999999999999999999987544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-52 Score=482.29 Aligned_cols=537 Identities=21% Similarity=0.172 Sum_probs=436.8
Q ss_pred Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382 1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79 (691)
Q Consensus 1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 79 (691)
|+|++|.|+.+ +..|+++++|++|+|++|. ..+.++...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 58999999998 6899999999999999997 444444467999999999999997765544455667789999999999
Q ss_pred CCCCCcchh--hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCC--CccCEEEccCCcCc
Q 046382 80 IDGGTFPKF--LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSH--QNLATLDVSNNFFH 155 (691)
Q Consensus 80 ~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~Ls~n~i~ 155 (691)
.+.+..+.. +.++++|++|++++|.+++..+...|+++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 999866655 89999999999999999866554457999999999999999988888888877 89999999999998
Q ss_pred ccCchhhhhCCC------CCcEEEccCCcccccCchhhhCC---CCCCEEecccc---------ccccccchhHhhcC--
Q 046382 156 GHIPVEIGTYLP------GLMDLNLSRNAFNGSIPSSFADM---KMLERLDISDN---------QLTGEIPERMATGC-- 215 (691)
Q Consensus 156 ~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n---------~l~~~~~~~~~~~l-- 215 (691)
+..|..+.. ++ .|++|++++|.+.+..+..+... .+++.|.++.+ .+. ......+.++
T Consensus 188 ~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~f~~l~~ 265 (844)
T 3j0a_A 188 SRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLAR 265 (844)
T ss_dssp CCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST-TGGGTTTTTTTT
T ss_pred cccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC-CCChhhhhcccc
Confidence 777765443 23 49999999999887777766543 67888888743 232 2223333443
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEec
Q 046382 216 FSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295 (691)
Q Consensus 216 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 295 (691)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 68999999999999888889999999999999999999888999999999999999999999888899999999999999
Q ss_pred CCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCc
Q 046382 296 PNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375 (691)
Q Consensus 296 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 375 (691)
++|.+.+..+..|..+++|++|++++|.+.+.. .+++|+.|++++|+++.... ...+++.|++++|++++..
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLD 417 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSST
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCcccccc----cccccceeecccCccccCc
Confidence 999999888888999999999999999987433 27899999999999985532 2568999999999998642
Q ss_pred -chhhcCCCCccEEecccCcCcccCCc-CCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccc
Q 046382 376 -PNRIDRLPQLNYLLLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVY 453 (691)
Q Consensus 376 -~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 453 (691)
+..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~------------------------ 473 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW------------------------ 473 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS------------------------
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch------------------------
Confidence 33466899999999999999865443 4667899999999999997432211100
Q ss_pred cccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhh
Q 046382 454 ISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTF 533 (691)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 533 (691)
..+ ..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+
T Consensus 474 ---------------------------~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 474 ---------------------------DVF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp ---------------------------SCS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred ---------------------------hhh--cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 001 116899999999999998888999999999999999999998777776
Q ss_pred cCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCCCCCCCC
Q 046382 534 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNG 610 (691)
Q Consensus 534 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~~c~~~~ 610 (691)
. ++|+.|||++|++++..|+.+ ++|+.+++++|++.+..+ +..+.......|...|+.+....|..+.
T Consensus 525 ~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~----~~~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 525 P--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE----LSTFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp C--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS----CCSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred h--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc----cHHHHHHHHhcCcccccccccCccCCch
Confidence 5 899999999999999988765 479999999999987543 2233222233455566655555675443
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-50 Score=449.32 Aligned_cols=506 Identities=19% Similarity=0.162 Sum_probs=424.4
Q ss_pred Ccccccccccccc-cccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382 1 MSLTINLLKTSLI-SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79 (691)
Q Consensus 1 l~l~~n~~~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 79 (691)
|+|++|.++.++. .|+++++|++|+|++|.+...+ ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE--DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccC--HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 5789999999975 8999999999999999854432 256899999999999997654433345667779999999999
Q ss_pred CCCCCcchhhcCCCCCCEEEccCCCCcc-cCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccC----EEEccCCcC
Q 046382 80 IDGGTFPKFLYHQHDLKNADLSHLNLSG-QFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLA----TLDVSNNFF 154 (691)
Q Consensus 80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~Ls~n~i 154 (691)
.+.+..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|++.+..+..++.+++|+ +|++++|.+
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence 9998877889999999999999999975 56776 58999999999999999988888787776665 899999999
Q ss_pred cccCchhhhhCCCCCcEEEccCCccc-ccCchhhhCCCCCCEEecccccccc-----ccchhHhhcCC--CCCEEEc-cc
Q 046382 155 HGHIPVEIGTYLPGLMDLNLSRNAFN-GSIPSSFADMKMLERLDISDNQLTG-----EIPERMATGCF--SLKILAL-SN 225 (691)
Q Consensus 155 ~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~--~L~~L~l-~~ 225 (691)
+ .++...+.. .+|++|++++|.+. +..|..+++++.|+.+++..+.+.+ .++...+.++. .++.+++ ..
T Consensus 194 ~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 194 D-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp C-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred c-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 9 677777764 49999999999986 4677889999999999886654431 12333333333 4566677 66
Q ss_pred ccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc
Q 046382 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305 (691)
Q Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 305 (691)
+.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+ +.+|. + .+++|++|++++|...+.
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~-- 343 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSIS-- 343 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEE--
T ss_pred ccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccc--
Confidence 777776666 888999999999999986 455 788999999999999999 46774 4 899999999999965433
Q ss_pred hhhcCCCCCCEEEccCCcCcccC--CCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc-hhhcC
Q 046382 306 IEFCQLSALKILDLSNNSIFGTL--PSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP-NRIDR 381 (691)
Q Consensus 306 ~~~~~l~~L~~L~L~~n~i~~~~--~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~ 381 (691)
..+..+++|++|++++|.+.+.. +..+ .+++|++|++++|.+++.. ..+..+++|+.|++++|.+.+..+ ..+..
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 36778999999999999988663 3333 7899999999999998754 788899999999999999997776 67899
Q ss_pred CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCC-CChhhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382 382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH-IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS 460 (691)
Q Consensus 382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (691)
+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+..
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------- 471 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN------------------------------- 471 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-------------------------------
Confidence 99999999999999998999999999999999999999763 4443332
Q ss_pred CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC
Q 046382 461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE 540 (691)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 540 (691)
+++|++|++++|++++..|..+..+++|++|+|++|++++..|..|.++++|+
T Consensus 472 ---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 472 ---------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred ---------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 68999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccCCcccccCC-CCCeEEccCCcccccCCC
Q 046382 541 SLDLSYNLLHGKIPPQLIVLN-TLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 541 ~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~ 579 (691)
+|+|++|+++ .+|..+..++ +|+.|++++|++.+..+.
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999 5666688887 599999999999876553
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=433.61 Aligned_cols=489 Identities=19% Similarity=0.178 Sum_probs=327.4
Q ss_pred CCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEc
Q 046382 46 KLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLL 125 (691)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L 125 (691)
++++|+++++.........+..+.+|++|++++|.+++..+..+.++++|++|++++|.+++..|. .|+++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCccccccccc
Confidence 455555555433222222233344555555555555444444455555555555555555422222 2345555555555
Q ss_pred cCCcccccCCcCccCCCccCEEEccCCcCcc-cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC----CEEeccc
Q 046382 126 ANNSLFGSFRMPIHSHQNLATLDVSNNFFHG-HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML----ERLDISD 200 (691)
Q Consensus 126 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~L~~ 200 (691)
++|++.+..+..++.+++|++|++++|.+++ .+|..+.. +++|++|++++|.+++..+..++.+++| ++|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 5555544444345555555555555555542 23444333 4555555555555554444444444444 4555555
Q ss_pred cccccccchhHhhcCCCCCEEEcccccCCc-cCcccccCCCCCCEEEccCCcC------cccCCccccCCC--CCCEEEc
Q 046382 201 NQLTGEIPERMATGCFSLKILALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKF------IGEIPESLSKCY--LLGGLYL 271 (691)
Q Consensus 201 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~--~L~~L~l 271 (691)
|.++ .++...+... +|+.|++++|.... ..+..+..+++++...+....+ .......+..++ .++.+++
T Consensus 187 n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 187 NPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp CCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 5554 2333332222 45555555443221 1122233344443333322111 111112222222 2456677
Q ss_pred cCC-cCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccc
Q 046382 272 SDN-HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGR 350 (691)
Q Consensus 272 ~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~ 350 (691)
+++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.. ++. ..+++|++|++++|.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~-~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT-LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB-CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc-ccccccCEEeCcCCccccc
Confidence 766 666777888999999999999999998 567777778 99999999999883 333 4678999999999998776
Q ss_pred cccccCCCCCccEEeccCCCCCCCc--chhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCCh-hh
Q 046382 351 LESIIHDSPYLVTLDLSYNRLHGSI--PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS-CL 427 (691)
Q Consensus 351 ~~~~~~~~~~L~~L~ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~ 427 (691)
.+. ..+++|+.|++++|.+++.. +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..|. .+
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 554 68899999999999998654 67889999999999999999866554 88999999999999998755442 11
Q ss_pred hhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccch
Q 046382 428 VNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT 507 (691)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 507 (691)
. .+++|++|++++|.+++..|.
T Consensus 418 ~----------------------------------------------------------~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 418 L----------------------------------------------------------SLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp T----------------------------------------------------------TCTTCCEEECTTSCCEECCTT
T ss_pred h----------------------------------------------------------cCCCCCEEeCcCCcccccchh
Confidence 1 168899999999999988999
Q ss_pred hhhcccCCCeEeCCCCcCC-cccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCC
Q 046382 508 QIGYLSGIHALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFST 585 (691)
Q Consensus 508 ~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~ 585 (691)
.+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|. ...++.
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 9999999999999999997 57899999999999999999999999899999999999999999999998776 467788
Q ss_pred cCcCcccCCCCCCCCCCC
Q 046382 586 FEEDSYEGNPFLCGKPLS 603 (691)
Q Consensus 586 ~~~~~~~~Np~~c~~~l~ 603 (691)
++.+++++||+.|+|+..
T Consensus 520 L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 520 LQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEEECCSSCBCCCTTTT
T ss_pred CcEEEecCCcccCCCcch
Confidence 999999999999999853
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-48 Score=430.52 Aligned_cols=507 Identities=19% Similarity=0.197 Sum_probs=418.8
Q ss_pred ccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCC
Q 046382 3 LTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDG 82 (691)
Q Consensus 3 l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 82 (691)
-++..++++|..+. +++++|+|++|.+...+ ...+.++++|++|+++++.........+..+.+|++|++++|.++
T Consensus 14 c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 14 CMELNFYKIPDNLP--FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp CCSSCCSSCCSSSC--SSCCEEECCSCCCCEEC--TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eCCCCccccCCCcc--ccccEEEccCCccCccC--hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 35567889997664 68999999999954433 246899999999999997654433344667779999999999998
Q ss_pred CCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccc-cCCcCccCCCccCEEEccCCcCcccCchh
Q 046382 83 GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPVE 161 (691)
Q Consensus 83 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 161 (691)
+..+..+.++++|++|++++|.++ .++...++++++|++|++++|.+.+ ..|..+.++++|++|++++|++++..+..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred ccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 888889999999999999999998 4554336899999999999999977 36888999999999999999999544444
Q ss_pred hhhCCCCC----cEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC------cc
Q 046382 162 IGTYLPGL----MDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ------GH 231 (691)
Q Consensus 162 ~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------~~ 231 (691)
+.. +++| ++|++++|.+++..+..+... +|++|++++|..........+.+++.++.+.+....+. ..
T Consensus 169 ~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 169 LRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred ccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 443 6677 899999999998888888766 89999999986543333344567888887776543322 11
Q ss_pred CcccccCCC--CCCEEEccCC-cCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhh
Q 046382 232 IFSKKFNLT--NLMRLQLDGN-KFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF 308 (691)
Q Consensus 232 ~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 308 (691)
....+..++ .++.+++.++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-- 321 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-- 321 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--
Confidence 222223333 3567777777 667778888999999999999999998 577778888 9999999999998 4443
Q ss_pred cCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccccc--ccccCCCCCccEEeccCCCCCCCcchhhcCCCCcc
Q 046382 309 CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLN 386 (691)
Q Consensus 309 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~ 386 (691)
..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+ .+..+++|+
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~ 399 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLE 399 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCC
T ss_pred ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCC
Confidence 4788999999999998766554 67899999999999998764 5678899999999999999985544 489999999
Q ss_pred EEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCC
Q 046382 387 YLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPP 465 (691)
Q Consensus 387 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (691)
+|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------ 443 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------------ 443 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------------
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------------------------------------
Confidence 99999999987665 57889999999999999998766654433
Q ss_pred CCCcccEEEEecCccceeccccccccceEEcCCCeee-eccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeC
Q 046382 466 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT-GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL 544 (691)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 544 (691)
+++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|++
T Consensus 444 ----------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 444 ----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp ----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 679999999999998 578999999999999999999999888999999999999999
Q ss_pred CCccccccCCcccccCCCCCeEEccCCcccccCCCCC
Q 046382 545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581 (691)
Q Consensus 545 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 581 (691)
++|++++..|..+..+++|+.|++++|++++..|...
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999888889999999999999999999887643
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-46 Score=415.86 Aligned_cols=476 Identities=20% Similarity=0.169 Sum_probs=295.4
Q ss_pred cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382 2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID 81 (691)
Q Consensus 2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 81 (691)
+.+++.++++|..+. ++|++|+|++|.+...+ ...+.+++ +|++|++++|.+
T Consensus 11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~--~~~~~~l~------------------------~L~~L~Ls~n~i 62 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIG--HGDLRACA------------------------NLQVLILKSSRI 62 (549)
T ss_dssp ECTTSCCSSCCSCCC--TTCCEEECCSSCCCEEC--SSTTSSCT------------------------TCCEEECTTSCC
T ss_pred ECCCCccccccccCC--CCccEEECcCCccCccC--hhhhhcCC------------------------cccEEECCCCCc
Confidence 345677777776554 67888888877733221 12344444 555555555666
Q ss_pred CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc-CCcCccCCCccCEEEccCCcCcccCch
Q 046382 82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS-FRMPIHSHQNLATLDVSNNFFHGHIPV 160 (691)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 160 (691)
++..+..+.++++|++|++++|.+++ ++...++++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.+|.
T Consensus 63 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 63 NTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence 65566677888888888888888874 4444458888888888888888653 456788888888888888885446765
Q ss_pred hhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccC---ccccc
Q 046382 161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI---FSKKF 237 (691)
Q Consensus 161 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~ 237 (691)
..+..+++|++|++++|.+++..|..++.+++|++|++++|.+. .+|..++..+++|++|++++|.+++.. .....
T Consensus 142 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 220 (549)
T 2z81_A 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220 (549)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhh
Confidence 55555888888888888888888888888888999999888887 777777777888888888888887642 12223
Q ss_pred CCCCCCEEEccCCcCcccCC----ccccCCCCCCEEEccCCcCCCcc------hhhhhcCCCCCEEecCCCccCCC----
Q 046382 238 NLTNLMRLQLDGNKFIGEIP----ESLSKCYLLGGLYLSDNHLSGEI------PRWLGNLSALEGIRMPNNNLEGP---- 303 (691)
Q Consensus 238 ~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~~~~~---- 303 (691)
.+++|+.|++++|.+.+..+ ..+..++.|+.+++++|.+.+.. ...+..+++++.|.+.++.+...
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 300 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence 46778888888887665332 23355667777777777665321 11234455666666666554321
Q ss_pred -cchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccc---cccCCCCCccEEeccCCCCCCCcc--
Q 046382 304 -IPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE---SIIHDSPYLVTLDLSYNRLHGSIP-- 376 (691)
Q Consensus 304 -~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~ls~n~i~~~~~-- 376 (691)
.+..+...++|+.|++++|.+.......+ .+++|++|++++|.+++..+ ..+..+++|+.|++++|++++..+
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence 11112234456666666666553222222 35666666666666655432 224556666666666666654321
Q ss_pred hhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCccccccc
Q 046382 377 NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISA 456 (691)
Q Consensus 377 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 456 (691)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~------------------------------ 428 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC------------------------------ 428 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTT------------------------------
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccch------------------------------
Confidence 34556666666666666666 45555566666666666666654 11110
Q ss_pred ccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCC
Q 046382 457 CLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL 536 (691)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 536 (691)
.+++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ...+
T Consensus 429 ------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 429 ------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp ------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred ------------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccC
Confidence 0234556666666655422 34555666666666655 3333 2445
Q ss_pred CcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382 537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 575 (691)
++|+.|+|++|++++..|+.+..+++|+.|++++|++++
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 556666666666555555555555555555555555443
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-46 Score=410.33 Aligned_cols=464 Identities=17% Similarity=0.193 Sum_probs=324.9
Q ss_pred Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382 1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79 (691)
Q Consensus 1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 79 (691)
|+|++|.++.+ |..|+++++|++|+|++|++...+ ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccC--hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 57899999998 578999999999999999944332 245788888888888875443222222344557777777777
Q ss_pred CCCC-CcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccC
Q 046382 80 IDGG-TFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI 158 (691)
Q Consensus 80 ~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 158 (691)
.+++ ..+..++++++|++|++++|.+.+.+|...++++++|++|++++|++.+..+..+..+++|++|++++|.+. .+
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~ 187 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FL 187 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-TH
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-cc
Confidence 7765 345567777777777777777444555444577777777777777777777777777777777777777766 56
Q ss_pred chhhhhCCCCCcEEEccCCcccccC---chhhhCCCCCCEEeccccccccccchhHh---hcCCCCCEEEcccccCCccC
Q 046382 159 PVEIGTYLPGLMDLNLSRNAFNGSI---PSSFADMKMLERLDISDNQLTGEIPERMA---TGCFSLKILALSNNSLQGHI 232 (691)
Q Consensus 159 ~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~ 232 (691)
|..+...+++|++|++++|.+++.. ......+++|++|++++|.+++..+..+. ..+++|+.+++++|.+.+..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 6666555677777777777776431 11233456777777777776654443332 33556666666666554321
Q ss_pred cccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCc-----chhhhhcCCCCCEEecCCCccCCCcchh
Q 046382 233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE-----IPRWLGNLSALEGIRMPNNNLEGPIPIE 307 (691)
Q Consensus 233 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 307 (691)
... ......+..+++++.|++.++.+... .+..+...++|+.|++++|.+. .+|..
T Consensus 268 ~~~------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~ 328 (549)
T 2z81_A 268 DFN------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCS 328 (549)
T ss_dssp CCC------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHH
T ss_pred ccc------------------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHH
Confidence 000 00011233444555555555544321 1223344567777888877776 34444
Q ss_pred h-cCCCCCCEEEccCCcCcccCC---C-CCCCCcccEEEccCCccccccc--cccCCCCCccEEeccCCCCCCCcchhhc
Q 046382 308 F-CQLSALKILDLSNNSIFGTLP---S-CFSPAHIEQVHLSKNKIEGRLE--SIIHDSPYLVTLDLSYNRLHGSIPNRID 380 (691)
Q Consensus 308 ~-~~l~~L~~L~L~~n~i~~~~~---~-~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~ls~n~i~~~~~~~~~ 380 (691)
+ ..+++|++|++++|.+.+..+ . ...+++|++|++++|++++..+ ..+..+++|+.|++++|+++ .+|..+.
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 407 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc
Confidence 3 567788888888887776432 1 2356788888888888876543 45788999999999999998 6788888
Q ss_pred CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382 381 RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS 460 (691)
Q Consensus 381 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (691)
.+++|++|++++|++++ ++..+ .++|++|++++|++++..+
T Consensus 408 ~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~------------------------------------ 448 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL------------------------------------ 448 (549)
T ss_dssp CCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC------------------------------------
T ss_pred ccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc------------------------------------
Confidence 89999999999999984 34333 3689999999999974221
Q ss_pred CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC
Q 046382 461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE 540 (691)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 540 (691)
.+++|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|..|..+++|+
T Consensus 449 --------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 449 --------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp --------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred --------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 1678999999999998 6665 56799999999999999998888999999999
Q ss_pred EEeCCCccccccCC
Q 046382 541 SLDLSYNLLHGKIP 554 (691)
Q Consensus 541 ~L~Ls~N~l~~~~p 554 (691)
.|++++|++++..|
T Consensus 501 ~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 501 KIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCccCCCc
Confidence 99999999987665
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-48 Score=430.29 Aligned_cols=435 Identities=18% Similarity=0.249 Sum_probs=241.8
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCC------cc------cCchHHhhcCCCCCEEEccCCcccccCCcC
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL------SG------QFPNWLLENNTNLVMLLLANNSLFGSFRMP 137 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~------~~------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 137 (691)
+++.|+|+++.+.|.+|..++++++|++|+|++|.+ .+ .+|... +..|+ ++++++.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 788888888888888888888888888888888754 12 233322 23333 444444443333322
Q ss_pred ccC-------------------CCccCEEEcc--CCcCcccCchhhhhCCCCCcEEEccCCccccc--------------
Q 046382 138 IHS-------------------HQNLATLDVS--NNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS-------------- 182 (691)
Q Consensus 138 l~~-------------------l~~L~~L~Ls--~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~-------------- 182 (691)
+.. ...++.+.+. +|++++ +|..+.. +++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence 220 0111111111 344443 4544443 45555555555555543
Q ss_pred ---Cchhhh--CCCCCCEEeccccccccccchhHhhcCCCCCEEEccccc-CCc-cCcccccCC------CCCCEEEccC
Q 046382 183 ---IPSSFA--DMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS-LQG-HIFSKKFNL------TNLMRLQLDG 249 (691)
Q Consensus 183 ---~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~L~~ 249 (691)
+|..++ ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ +++ ..|..++.+ ++|++|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 455544 55555555555555554555433 345555555555554 444 344444333 5555555555
Q ss_pred CcCcccCCc--cccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCC-CCEEEccCCcCcc
Q 046382 250 NKFIGEIPE--SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA-LKILDLSNNSIFG 326 (691)
Q Consensus 250 n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~i~~ 326 (691)
|+++ .+|. .+..+++|+.|++++|.+++.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 5555 4444 55555555555555555554455 5555555555666655555 44555555555 666666666655
Q ss_pred cCCCCC-C--CCcccEEEccCCccccccccccC-------CCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382 327 TLPSCF-S--PAHIEQVHLSKNKIEGRLESIIH-------DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396 (691)
Q Consensus 327 ~~~~~~-~--~~~L~~L~l~~n~i~~~~~~~~~-------~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 396 (691)
.+|..+ . +++|++|++++|.+++..|..+. .+++|+.|++++|.++...+..+..+++|++|++++|+++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 333332 1 23566666666666655555555 5556667777777666433334455666777777777666
Q ss_pred ccCCcCCCCC-------CCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCc
Q 046382 397 GEIPVQLCQL-------KEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE 469 (691)
Q Consensus 397 ~~~~~~~~~l-------~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (691)
...+..+... ++|+.|++++|+++ .+|..+...
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~--------------------------------------- 510 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT--------------------------------------- 510 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT---------------------------------------
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc---------------------------------------
Confidence 3222222222 26667777777665 455433200
Q ss_pred ccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC------CCCcCCcccchhhcCCCcCCEEe
Q 046382 470 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL------SHNNLTGTIPTTFSNLKQIESLD 543 (691)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~ 543 (691)
.+++|++|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|+
T Consensus 511 -----------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 511 -----------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp -----------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred -----------------cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 14566667777777664 6666666777777766 44566666676777777777777
Q ss_pred CCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382 544 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 544 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
|++|++ +.+|..+. ++|+.|++++|++...
T Consensus 573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 777777 35555544 5677777777766543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=410.12 Aligned_cols=456 Identities=20% Similarity=0.176 Sum_probs=360.8
Q ss_pred cEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccC
Q 046382 72 TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSN 151 (691)
Q Consensus 72 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 151 (691)
++|+++++.++ .+|..+. ++|++|++++|.+++..|. .|.++++|++|++++|++.+..|..+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46888888887 4565554 7899999999998844444 468899999999999999888888899999999999999
Q ss_pred CcCcccCchhhhhCCCCCcEEEccCCcccc-cCchhhhCCCCCCEEeccccccccccchhHhhcCCCC--CEEEcccccC
Q 046382 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSL--KILALSNNSL 228 (691)
Q Consensus 152 n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l 228 (691)
|+++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+++ ..+..+++| +.|++++|.+
T Consensus 79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 9998 77776 47899999999999986 467889999999999999998874 224567788 9999999998
Q ss_pred --CccCcccccCCC-CCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCc-------CCCcchhhhhcCCCCCEEecCC
Q 046382 229 --QGHIFSKKFNLT-NLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNH-------LSGEIPRWLGNLSALEGIRMPN 297 (691)
Q Consensus 229 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L~l~~ 297 (691)
.+..+..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 666666665554 23457788888766544 456788899999999987 554444 678899999999999
Q ss_pred CccCCCcchhhc---CCCCCCEEEccCCcCcccCCCC------CCCCcccEEEccCCccccccccccCCC---CCccEEe
Q 046382 298 NNLEGPIPIEFC---QLSALKILDLSNNSIFGTLPSC------FSPAHIEQVHLSKNKIEGRLESIIHDS---PYLVTLD 365 (691)
Q Consensus 298 n~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~------~~~~~L~~L~l~~n~i~~~~~~~~~~~---~~L~~L~ 365 (691)
|.+.+..+..+. ..++|++|++++|.+.+.++.. ..+++|+.+++++|.+ ......+..+ .+|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 887643322221 2468999999999988666654 3578899999999988 3332333333 6799999
Q ss_pred ccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCC--CCChhhhhccccCCCCcccCCC
Q 046382 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG--HIPSCLVNTALSGGHHEAVAPT 443 (691)
Q Consensus 366 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~l~~~~~~~~~~~ 443 (691)
+++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-------------- 372 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-------------- 372 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence 9999987432 12678999999999999998888899999999999999999974 33333332
Q ss_pred cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccch-hhhcccCCCeEeCCC
Q 046382 444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT-QIGYLSGIHALNLSH 522 (691)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~ 522 (691)
+++|++|++++|.+++.+|. .+..+++|++|++++
T Consensus 373 --------------------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 373 --------------------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred --------------------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 67899999999999975665 488899999999999
Q ss_pred CcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382 523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 523 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...+..++.+++++||+.|+|+
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999887777664 79999999999999 7788888999999999999999965444 5667788999999999999997
Q ss_pred CCC
Q 046382 602 LSK 604 (691)
Q Consensus 602 l~~ 604 (691)
+.+
T Consensus 486 ~~~ 488 (520)
T 2z7x_B 486 RID 488 (520)
T ss_dssp HHH
T ss_pred chH
Confidence 543
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-46 Score=421.78 Aligned_cols=446 Identities=21% Similarity=0.245 Sum_probs=266.5
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEc-cCCCCcccCchHHh----------------------------------
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADL-SHLNLSGQFPNWLL---------------------------------- 114 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~---------------------------------- 114 (691)
+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|..|....
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 7888999999888888888899999999999 77766544221100
Q ss_pred ----------------hcCCCCCEEEcc--CCcccccCCcCccCCCccCEEEccCCcCcc-----------------cCc
Q 046382 115 ----------------ENNTNLVMLLLA--NNSLFGSFRMPIHSHQNLATLDVSNNFFHG-----------------HIP 159 (691)
Q Consensus 115 ----------------~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~-----------------~~~ 159 (691)
.....++.+.+. .|++++ +|..+.++++|++|+|++|++++ .+|
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 000111222222 144444 44455555555555555555554 144
Q ss_pred hhhh-hCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccc-ccc-ccchhHhhcCCCCCEEEcccccCCccCcccc
Q 046382 160 VEIG-TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ-LTG-EIPERMATGCFSLKILALSNNSLQGHIFSKK 236 (691)
Q Consensus 160 ~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 236 (691)
..+. ..+++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+. .++ ..+
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~-----------------~~~ 544 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLA-----------------DDE 544 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHH-----------------HCT
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhh-----------------hcc
Confidence 4442 124555555555555555555555555555555555554 443 3444332 111 011
Q ss_pred cCCCCCCEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCC-
Q 046382 237 FNLTNLMRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA- 313 (691)
Q Consensus 237 ~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~- 313 (691)
..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++
T Consensus 545 ~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~ 620 (876)
T 4ecn_A 545 DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ 620 (876)
T ss_dssp TTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTT
T ss_pred cccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhcccc
Confidence 22335555555555555 4444 4555555555555555555 444 4555555555555555555 44545555555
Q ss_pred CCEEEccCCcCcccCCCCC-CC--CcccEEEccCCcccccccccc---C--CCCCccEEeccCCCCCCCcchhhcCCCCc
Q 046382 314 LKILDLSNNSIFGTLPSCF-SP--AHIEQVHLSKNKIEGRLESII---H--DSPYLVTLDLSYNRLHGSIPNRIDRLPQL 385 (691)
Q Consensus 314 L~~L~L~~n~i~~~~~~~~-~~--~~L~~L~l~~n~i~~~~~~~~---~--~~~~L~~L~ls~n~i~~~~~~~~~~l~~L 385 (691)
|+.|++++|.+. .+|..+ .. ++|+.|++++|.+.+..+... . .+++|+.|++++|.++...+..+..+++|
T Consensus 621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L 699 (876)
T 4ecn_A 621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699 (876)
T ss_dssp CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence 666666666555 333333 11 236666666666655433221 1 23477788888887774333334577788
Q ss_pred cEEecccCcCcccCCcC-CCC-------CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccc
Q 046382 386 NYLLLAHNYIKGEIPVQ-LCQ-------LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC 457 (691)
Q Consensus 386 ~~L~L~~n~i~~~~~~~-~~~-------l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (691)
+.|++++|+++ .+|.. +.. +++|+.|++++|+++ .+|..+..
T Consensus 700 ~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~---------------------------- 749 (876)
T 4ecn_A 700 STIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA---------------------------- 749 (876)
T ss_dssp SEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST----------------------------
T ss_pred CEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh----------------------------
Confidence 88888888877 34433 322 237888888888887 56654430
Q ss_pred cCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCC------CcCCcccch
Q 046382 458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSH------NNLTGTIPT 531 (691)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~ 531 (691)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|.
T Consensus 750 ----------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 750 ----------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp ----------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ----------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 015778888888888885 677788888888888866 788888999
Q ss_pred hhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCC-CCCCcCcCcccCCCCCC--CCC
Q 046382 532 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGNPFLC--GKP 601 (691)
Q Consensus 532 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~Np~~c--~~~ 601 (691)
.|.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+... .........+.+|++.+ +|+
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 999999999999999999 57787765 699999999999876544311 11123345566777665 665
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-44 Score=407.63 Aligned_cols=528 Identities=19% Similarity=0.169 Sum_probs=396.0
Q ss_pred ccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCC
Q 046382 5 INLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGT 84 (691)
Q Consensus 5 ~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 84 (691)
+..++++|..+. +++++|||++|+|...+ ...|.++++|++|+++++.........+..+.+|++|+|++|++++.
T Consensus 40 ~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 40 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCcCccCCCCC--cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 346788886654 48999999999955443 24688999999999998765433333456677899999999888876
Q ss_pred cchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc-CCcCccCCCccCEEEccCCcCcccCchhhh
Q 046382 85 FPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS-FRMPIHSHQNLATLDVSNNFFHGHIPVEIG 163 (691)
Q Consensus 85 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 163 (691)
.+..+.++++|++|++++|+++ .++...|+++++|++|++++|.+.+. .+..+..+++|++|++++|++++..+..+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 6677888889999999999887 55555568888999999999888653 466778888899999999988854444433
Q ss_pred hCCC----CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC------ccCc
Q 046382 164 TYLP----GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ------GHIF 233 (691)
Q Consensus 164 ~~l~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~ 233 (691)
. +. ....++++.|.+....+..+ ....++.+++.+|.....++...+.++..++...+..+... ....
T Consensus 195 ~-L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 195 V-LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp H-HHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred c-hhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 2 22 34578888888885555444 44557788888887665566666677888877766543322 2222
Q ss_pred ccccCCCCCCEEEccCCcCc---ccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcC
Q 046382 234 SKKFNLTNLMRLQLDGNKFI---GEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ 310 (691)
Q Consensus 234 ~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 310 (691)
..+.....+....+..+... ......+.....++.+.+.++.+... ..+.....++.|++.+|.+....+ ..
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~ 347 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LK 347 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CB
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---cc
Confidence 33334445555554443322 12334456677888888888877533 335667889999999998875433 34
Q ss_pred CCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccc--cccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEE
Q 046382 311 LSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGR--LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL 388 (691)
Q Consensus 311 l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 388 (691)
+..|+.+++..|.+.. ......+++|+.+++++|.+... .+..+..+.+|+.++++.+.+. ..+..+..+++|+.+
T Consensus 348 l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHL 425 (635)
T ss_dssp CTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEE
T ss_pred chhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccch
Confidence 6778899999888764 33344678999999999987543 3445567788999999999877 445567788999999
Q ss_pred ecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382 389 LLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG 467 (691)
Q Consensus 389 ~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (691)
++++++.....+ ..+..+++++.+++++|.+.+..|..+..
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------------- 467 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------------- 467 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------------
T ss_pred hhhhcccccccccccccccccccccccccccccccccccccc--------------------------------------
Confidence 999888765443 46788899999999999987655543322
Q ss_pred CcccEEEEecCccceeccccccccceEEcCCCeee-eccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382 468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT-GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546 (691)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 546 (691)
+++++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 468 --------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 468 --------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp --------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred --------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 678999999999854 45788899999999999999999999999999999999999999
Q ss_pred ccccccCCcccccCCCCCeEEccCCcccccCCCC-CCC-CCcCcCcccCCCCCCCCCCCC
Q 046382 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQF-STFEEDSYEGNPFLCGKPLSK 604 (691)
Q Consensus 547 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~~~~~~~~~Np~~c~~~l~~ 604 (691)
|+|++..|..|..+++|++|++++|++++..|.. ..+ .+++.++++||||.|+|++.+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 9999999999999999999999999999998874 334 678999999999999998654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-47 Score=424.28 Aligned_cols=443 Identities=18% Similarity=0.241 Sum_probs=356.0
Q ss_pred CCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccc------c------cCCcCccCCCccCEEEccCCcCcccCch
Q 046382 93 HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLF------G------SFRMPIHSHQNLATLDVSNNFFHGHIPV 160 (691)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~------~------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 160 (691)
.+++.|+|+++.+.|.+|..+ +++++|++|+|++|.+. + ..|... +..|+ ++++++.+.+..|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 479999999999999999875 99999999999999762 2 122111 45677 88888877766665
Q ss_pred hhhhCCC------------------CCcEEEcc--CCcccccCchhhhCCCCCCEEeccccccccc--------------
Q 046382 161 EIGTYLP------------------GLMDLNLS--RNAFNGSIPSSFADMKMLERLDISDNQLTGE-------------- 206 (691)
Q Consensus 161 ~~~~~l~------------------~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------- 206 (691)
.+...+. .++.+.+. +|++++ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 5442111 22222222 577887 888899999999999999999864
Q ss_pred ---cchhHh-hcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCc-Ccc-cCCccccCC------CCCCEEEccCC
Q 046382 207 ---IPERMA-TGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK-FIG-EIPESLSKC------YLLGGLYLSDN 274 (691)
Q Consensus 207 ---~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n 274 (691)
+|..+. ..+++|++|++++|.+.+..|..+.++++|++|++++|+ +++ .+|..+..+ ++|+.|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 777662 268999999999999988888889999999999999998 887 778777665 89999999999
Q ss_pred cCCCcchh--hhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCc-ccEEEccCCcccccc
Q 046382 275 HLSGEIPR--WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH-IEQVHLSKNKIEGRL 351 (691)
Q Consensus 275 ~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~-L~~L~l~~n~i~~~~ 351 (691)
.++ .+|. .++.+++|++|++++|.+.+.+| .+..+++|++|++++|.+.........+++ |++|++++|.++ ..
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-cc
Confidence 998 7777 88999999999999999987777 888889999999999998844334446777 999999999988 45
Q ss_pred ccccCCCC--CccEEeccCCCCCCCcchhhc-------CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCC
Q 046382 352 ESIIHDSP--YLVTLDLSYNRLHGSIPNRID-------RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH 422 (691)
Q Consensus 352 ~~~~~~~~--~L~~L~ls~n~i~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 422 (691)
|..+..++ +|+.|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence 55666544 899999999999988888787 7789999999999998555555667899999999999987 5
Q ss_pred CChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeee
Q 046382 423 IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT 502 (691)
Q Consensus 423 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 502 (691)
+|........ .....+++|++|+|++|+++
T Consensus 472 i~~~~~~~~~--------------------------------------------------~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 472 IPKNSLKDEN--------------------------------------------------ENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCSSSSEETT--------------------------------------------------EECTTGGGCCEEECCSSCCC
T ss_pred cCHHHhcccc--------------------------------------------------ccccccCCccEEECcCCcCC
Confidence 5543221000 00011458999999999999
Q ss_pred eccchhhh--cccCCCeEeCCCCcCCcccchhhcCCCcCCEEeC------CCccccccCCcccccCCCCCeEEccCCccc
Q 046382 503 GEIPTQIG--YLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL------SYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574 (691)
Q Consensus 503 ~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 574 (691)
.+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|++++|++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 7888886 99999999999999997 8999999999999999 56888899999999999999999999999
Q ss_pred ccCCCCCCCCCcCcCcccCCCCCC
Q 046382 575 GKIPDRAQFSTFEEDSYEGNPFLC 598 (691)
Q Consensus 575 ~~~p~~~~~~~~~~~~~~~Np~~c 598 (691)
+.+|... ++.++.+++++||+.|
T Consensus 579 ~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred CccCHhH-hCcCCEEECcCCCCcc
Confidence 6677642 3789999999999987
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.1e-45 Score=397.86 Aligned_cols=433 Identities=21% Similarity=0.203 Sum_probs=248.2
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 149 (691)
+|++|++++|.+.+..+..+.++++|++|++++|++++..|.. |+++++|++|++++|++.+ +|.. .+++|++|++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 3444444444444443444444444555555544444322322 2444455555555554432 2222 4444555555
Q ss_pred cCCcCcc-cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC--CEEecccccc--ccccchhHhhcCC-CCCEEEc
Q 046382 150 SNNFFHG-HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML--ERLDISDNQL--TGEIPERMATGCF-SLKILAL 223 (691)
Q Consensus 150 s~n~i~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~l 223 (691)
++|++++ .+|..+.. +++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+ ..+. +...+++
T Consensus 98 ~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEEC
T ss_pred cCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc-cccccceEEEEe
Confidence 5554442 22333332 4455555555554442 233344444 5555555544 32333222 1111 1123344
Q ss_pred ccccCCccCc-ccccCCCCCCEEEccCCc-------CcccCCccccCCCCCCEEEccCCcCCCcchhhhh---cCCCCCE
Q 046382 224 SNNSLQGHIF-SKKFNLTNLMRLQLDGNK-------FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG---NLSALEG 292 (691)
Q Consensus 224 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~ 292 (691)
++|.+.+..+ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+++..+..+. ..++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 4444433222 233345555555555554 333333 455566666666666655432222111 1346777
Q ss_pred EecCCCccCCCcchhh-----cCCCCCCEEEccCCcCcccCCC-CC----CCCcccEEEccCCccccccccccCCCCCcc
Q 046382 293 IRMPNNNLEGPIPIEF-----CQLSALKILDLSNNSIFGTLPS-CF----SPAHIEQVHLSKNKIEGRLESIIHDSPYLV 362 (691)
Q Consensus 293 L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~-~~----~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 362 (691)
|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+|. .+ ...+|+.|++++|.+.... ....+++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 7777777666666665 6677777777777766 2221 11 1245777777777765432 125677788
Q ss_pred EEeccCCCCCCCcchhhcCCCCccEEecccCcCcc--cCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382 363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG--EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV 440 (691)
Q Consensus 363 ~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~ 440 (691)
+|++++|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++.+|....
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------ 395 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------ 395 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC------------
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh------------
Confidence 88888888877677777788888888888888875 3445677788888888888888754543210
Q ss_pred CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382 441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL 520 (691)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 520 (691)
..+++|++|++++|++++..|..+. ++|++|+|
T Consensus 396 ---------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 396 ---------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp ---------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred ---------------------------------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence 0156788888888888776666553 68889999
Q ss_pred CCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382 521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus 429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 999888 6677777888999999999988854333488888999999999988864
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-43 Score=401.88 Aligned_cols=354 Identities=20% Similarity=0.269 Sum_probs=209.9
Q ss_pred CCcCcc--CCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCc-ccc-cCchhhhCCC-------CCCEEeccccc
Q 046382 134 FRMPIH--SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA-FNG-SIPSSFADMK-------MLERLDISDNQ 202 (691)
Q Consensus 134 ~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~ 202 (691)
+|..++ ++++|++|+|++|.+.+.+|..+.. +++|++|++++|+ +++ .+|..++.++ +|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 444444 5555555555555555455544433 4555555555554 444 4444443333 55555555555
Q ss_pred cccccch-hHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCC-CCEEEccCCcCCCcc
Q 046382 203 LTGEIPE-RMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL-LGGLYLSDNHLSGEI 280 (691)
Q Consensus 203 l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~ 280 (691)
++ .+|. ..+..+++|+.|++++|.++ ..+ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 55 4554 12244555555555555555 233 4455555555555555555 44444555555 555555555555 34
Q ss_pred hhhhhcCCC--CCEEecCCCccCCCcchh---hc--CCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccc
Q 046382 281 PRWLGNLSA--LEGIRMPNNNLEGPIPIE---FC--QLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE 352 (691)
Q Consensus 281 ~~~l~~l~~--L~~L~l~~n~~~~~~~~~---~~--~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~ 352 (691)
|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+.......+ .+++|+.|++++|.++.+..
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 444443332 555555555555433311 11 22355666666666553322222 45556666666666554333
Q ss_pred cccC-------CCCCccEEeccCCCCCCCcchhhc--CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC
Q 046382 353 SIIH-------DSPYLVTLDLSYNRLHGSIPNRID--RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI 423 (691)
Q Consensus 353 ~~~~-------~~~~L~~L~ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 423 (691)
..+. ++++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----- 787 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----- 787 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----
Confidence 3333 3348889999999888 6777776 88899999999998886 67778888888888888764
Q ss_pred ChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee
Q 046382 424 PSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 503 (691)
Q Consensus 424 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 503 (691)
++++|.+.+
T Consensus 788 -----------------------------------------------------------------------~ls~N~l~~ 796 (876)
T 4ecn_A 788 -----------------------------------------------------------------------DAEGNRILR 796 (876)
T ss_dssp -----------------------------------------------------------------------CTTCCBCCC
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 235566666
Q ss_pred ccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc
Q 046382 504 EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574 (691)
Q Consensus 504 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 574 (691)
.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 7777788888888888888888 46666654 57888888888887766666666556666777777654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.5e-43 Score=385.83 Aligned_cols=457 Identities=19% Similarity=0.157 Sum_probs=345.7
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 149 (691)
..++++++++++++ +|..+. ++|++|++++|.+++ ++...|.++++|++|++++|++.+..+..|..+++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 45788999888875 565543 789999999999984 44434689999999999999998888888999999999999
Q ss_pred cCCcCcccCchhhhhCCCCCcEEEccCCccccc-CchhhhCCCCCCEEeccccccccccchhHhhcCCCC--CEEEcccc
Q 046382 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLERLDISDNQLTGEIPERMATGCFSL--KILALSNN 226 (691)
Q Consensus 150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n 226 (691)
++|+++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ . .+..+++| +.|++++|
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEEES
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEeecc
Confidence 999998 78876 488999999999999863 46889999999999999999874 2 23445666 99999999
Q ss_pred cC--CccCcccccCCC--CCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCC----CcchhhhhcCCCCCEEecCC
Q 046382 227 SL--QGHIFSKKFNLT--NLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLS----GEIPRWLGNLSALEGIRMPN 297 (691)
Q Consensus 227 ~l--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~ 297 (691)
.+ ++..+..+..+. .+ .+++++|.+.+..+ ..+..+++|+.+++++|... ......+..+++|+.+++.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 98 777777766554 23 56778888776554 34567788999999988521 12234567888999898888
Q ss_pred CccCCCcch---hhcCCCCCCEEEccCCcCcccCCCCC------CCCcccEEEccCCccccccccccC---CCCCccEEe
Q 046382 298 NNLEGPIPI---EFCQLSALKILDLSNNSIFGTLPSCF------SPAHIEQVHLSKNKIEGRLESIIH---DSPYLVTLD 365 (691)
Q Consensus 298 n~~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~---~~~~L~~L~ 365 (691)
+.+.+.... .....++|++|++++|.+.+.+|..+ .++.|+.+++..+.+ ......+. ...+|+.|+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEE
Confidence 776532111 11234589999999999886666543 334444445555554 11111111 125799999
Q ss_pred ccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC--ChhhhhccccCCCCcccCCC
Q 046382 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI--PSCLVNTALSGGHHEAVAPT 443 (691)
Q Consensus 366 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~~l~~~~~~~~~~~ 443 (691)
+++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++.. |..+..
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------- 401 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-------------- 401 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--------------
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--------------
Confidence 9999886432 1267889999999999999888889999999999999999987421 222221
Q ss_pred cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccc-hhhhcccCCCeEeCCC
Q 046382 444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP-TQIGYLSGIHALNLSH 522 (691)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 522 (691)
+++|++|++++|.+++.+| ..+..+++|++|++++
T Consensus 402 --------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 402 --------------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp --------------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred --------------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 6789999999999997455 4588899999999999
Q ss_pred CcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382 523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 523 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+. ...++.++.+++++|||.|+|+
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999877766554 78999999999998 6777777999999999999999965554 5667888899999999999997
Q ss_pred CC
Q 046382 602 LS 603 (691)
Q Consensus 602 l~ 603 (691)
..
T Consensus 515 ~~ 516 (562)
T 3a79_B 515 GI 516 (562)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.5e-41 Score=377.00 Aligned_cols=505 Identities=19% Similarity=0.170 Sum_probs=394.7
Q ss_pred Cccccccccccc-ccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382 1 MSLTINLLKTSL-ISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79 (691)
Q Consensus 1 l~l~~n~~~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 79 (691)
|+|++|.|+.++ .+|.++++||+|+|++|++...+ ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 689999999997 58999999999999999955443 246899999999999997653333333556779999999999
Q ss_pred CCCCCcchhhcCCCCCCEEEccCCCCccc-CchHHhhcCCCCCEEEccCCcccccCCcCccCCCc----cCEEEccCCcC
Q 046382 80 IDGGTFPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQN----LATLDVSNNFF 154 (691)
Q Consensus 80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~Ls~n~i 154 (691)
.+++..+..++++++|++|++++|.+.+. .|.. ++.+++|++|++++|++.+..+..+..+.+ ...++++.|.+
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 99987777899999999999999999753 4544 589999999999999998888877765544 34789999999
Q ss_pred cccCchhhhhCCCCCcEEEccCCcccc-cCchhhhCCCCCCEEecccccccc-----ccchhHhhcCCCCCEEEcccccC
Q 046382 155 HGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTG-----EIPERMATGCFSLKILALSNNSL 228 (691)
Q Consensus 155 ~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~l~~n~l 228 (691)
+ .++...+. ...++.+++.+|.... ..+..+..+..++...+..+.... ......+..+..+....+..+..
T Consensus 214 ~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 214 N-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp C-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred c-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 8 66666655 3467889998886542 344567788888877765433211 22222334455666666665443
Q ss_pred Cc---cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc
Q 046382 229 QG---HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305 (691)
Q Consensus 229 ~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 305 (691)
.. .....+....+++.+.+.++.+... ..+.....++.|++.+|.+....+ ..+..|+.+++..|.....
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~-- 364 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA-- 364 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--
T ss_pred cccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--
Confidence 32 2233445677899999988887643 336677889999999998875433 3567889999998887643
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCC---CCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc-hhhcC
Q 046382 306 IEFCQLSALKILDLSNNSIFGTLPS---CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP-NRIDR 381 (691)
Q Consensus 306 ~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~ 381 (691)
.....+++|+.+++++|.+...... .....+++.+++..+..... +..+..+++|+.++++++......+ ..+..
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccc
Confidence 3345788999999999988643222 22678899999999987754 3457789999999999887665433 45778
Q ss_pred CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCC-CCChhhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382 382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG-HIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS 460 (691)
Q Consensus 382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (691)
+++++.+++++|.+.+..+..+..+++++.|++++|.+.+ ..|..+..
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~------------------------------- 492 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------- 492 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-------------------------------
Confidence 9999999999999998889999999999999999997543 23332221
Q ss_pred CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC
Q 046382 461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE 540 (691)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 540 (691)
+++|++|||++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+
T Consensus 493 ---------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 493 ---------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ---------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 68899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccCCcccccC-CCCCeEEccCCccccc
Q 046382 541 SLDLSYNLLHGKIPPQLIVL-NTLEVFKVAYNNLSGK 576 (691)
Q Consensus 541 ~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~ 576 (691)
+|||++|++++..|+.+..+ ++|++|++++|++++.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999988 6899999999999863
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-40 Score=358.34 Aligned_cols=370 Identities=20% Similarity=0.204 Sum_probs=218.4
Q ss_pred CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcc
Q 046382 145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALS 224 (691)
Q Consensus 145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 224 (691)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34666666666 6665 2 35777777777777766677777777777777777777656666556677777777777
Q ss_pred cccCCccCcccccCCCCCCEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCCcchhh-hhcCCCCCEEecCCCccC
Q 046382 225 NNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLSGEIPRW-LGNLSALEGIRMPNNNLE 301 (691)
Q Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~ 301 (691)
+|.+++..+..+.++++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 7777766667777777777777777777653333 3667777777777777777665554 667777777777777777
Q ss_pred CCcchhhcCC--CCCCEEEccCCcCcccCCCC---------CCCCcccEEEccCCccccccccccCC---CCCccEEecc
Q 046382 302 GPIPIEFCQL--SALKILDLSNNSIFGTLPSC---------FSPAHIEQVHLSKNKIEGRLESIIHD---SPYLVTLDLS 367 (691)
Q Consensus 302 ~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~---------~~~~~L~~L~l~~n~i~~~~~~~~~~---~~~L~~L~ls 367 (691)
+..+..+..+ .+|+.|++++|.+.+..+.. +..++|++|++++|.+++..+..+.. .++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 6666666554 56777777777766543322 23456777777777666554443332 2566677776
Q ss_pred CCCCCCCcc----------hhhc--CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCC
Q 046382 368 YNRLHGSIP----------NRID--RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGG 435 (691)
Q Consensus 368 ~n~i~~~~~----------~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~ 435 (691)
+|...+... ..+. ..++|++|++++|++++..|..+..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--------------------------- 300 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD--------------------------- 300 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT---------------------------
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCC---------------------------
Confidence 665442210 0111 1134444444444444444444444444
Q ss_pred CCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCC
Q 046382 436 HHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGI 515 (691)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 515 (691)
|++|++++|.+++..|..|..+++|
T Consensus 301 -------------------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 301 -------------------------------------------------------LEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp -------------------------------------------------------CCEEECTTSCCCEECTTTTTTCTTC
T ss_pred -------------------------------------------------------CCEEECCCCcccccChhHhcCcccC
Confidence 4555555555554444455555555
Q ss_pred CeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCC
Q 046382 516 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGN 594 (691)
Q Consensus 516 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~N 594 (691)
++|+|++|.+++..|..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+. ...++.++.+++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 5555555555544445555555555555555555544455555555555555555555543333 233444555555555
Q ss_pred CCCCCCC
Q 046382 595 PFLCGKP 601 (691)
Q Consensus 595 p~~c~~~ 601 (691)
|+.|+|+
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 5555554
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-41 Score=373.98 Aligned_cols=458 Identities=19% Similarity=0.145 Sum_probs=334.9
Q ss_pred CCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEE
Q 046382 44 LSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVML 123 (691)
Q Consensus 44 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 123 (691)
+...++++++++.... ++.-.+ .+|++|++++|.+++..+..+.++++|++|++++|.+++..|.. |.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~--ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH--VPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS--CCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc--CCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEE
Confidence 3344667777643321 211111 48888888888888777788888999999999999888554544 5888999999
Q ss_pred EccCCcccccCCcCccCCCccCEEEccCCcCcc-cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC--CEEeccc
Q 046382 124 LLANNSLFGSFRMPIHSHQNLATLDVSNNFFHG-HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML--ERLDISD 200 (691)
Q Consensus 124 ~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~ 200 (691)
++++|++... |.. .+++|++|++++|++++ .+|..+. .+++|++|++++|.+++. .+..+++| ++|++++
T Consensus 106 ~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred ECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 9999988754 333 78899999999998883 2234454 478999999999988753 34555555 9999999
Q ss_pred ccc--ccccchhHhhcCC-CCCEEEcccccCCccCcc-cccCCCCCCEEEccCCcCc----ccCCccccCCCCCCEEEcc
Q 046382 201 NQL--TGEIPERMATGCF-SLKILALSNNSLQGHIFS-KKFNLTNLMRLQLDGNKFI----GEIPESLSKCYLLGGLYLS 272 (691)
Q Consensus 201 n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~ 272 (691)
|.+ ++..|..+ ..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|+.. ......+..++.|+.+++.
T Consensus 179 n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 179 VSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp SSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred ccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 888 65555443 2232 112557777777654433 4456788999999887521 0112346778888888888
Q ss_pred CCcCCCcc----hhhhhcCCCCCEEecCCCccCCCcchhh-----cCCCCCCEEEccCCcCcccCCC-C----CCCCccc
Q 046382 273 DNHLSGEI----PRWLGNLSALEGIRMPNNNLEGPIPIEF-----CQLSALKILDLSNNSIFGTLPS-C----FSPAHIE 338 (691)
Q Consensus 273 ~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~-~----~~~~~L~ 338 (691)
++.+.+.. +..+ ..++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .++. . +...+|+
T Consensus 258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 87775422 2222 24589999999999987777766 5666666666666665 2221 1 1235799
Q ss_pred EEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc--CCcCCCCCCCCCEEEccC
Q 046382 339 QVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE--IPVQLCQLKEVRLIDLSH 416 (691)
Q Consensus 339 ~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~ 416 (691)
+|++++|.+.... ....+++|+.|++++|.+++..|..+..+++|++|++++|++++. .|..+..+++|++|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 9999999886442 226789999999999999988889999999999999999999863 346789999999999999
Q ss_pred CCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEc
Q 046382 417 NNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDL 496 (691)
Q Consensus 417 n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 496 (691)
|++++.+|.... ..+++|++|++
T Consensus 413 N~l~~~~~~~~~---------------------------------------------------------~~l~~L~~L~l 435 (562)
T 3a79_B 413 NSLNSHAYDRTC---------------------------------------------------------AWAESILVLNL 435 (562)
T ss_dssp SCCBSCCSSCCC---------------------------------------------------------CCCTTCCEEEC
T ss_pred CcCCCccChhhh---------------------------------------------------------cCcccCCEEEC
Confidence 999865554211 11678999999
Q ss_pred CCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382 497 SCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 497 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99999877776554 78999999999999 6677677999999999999999954444489999999999999999875
Q ss_pred CC
Q 046382 577 IP 578 (691)
Q Consensus 577 ~p 578 (691)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-40 Score=356.42 Aligned_cols=383 Identities=21% Similarity=0.191 Sum_probs=241.1
Q ss_pred EEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccC
Q 046382 97 NADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSR 176 (691)
Q Consensus 97 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 176 (691)
.++.+++.++ .+|. + .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4455555554 4443 1 255666666666665555555666666666666666655455444444456666666666
Q ss_pred CcccccCchhhhCCCCCCEEeccccccccccch-hHhhcCCCCCEEEcccccCCccCccc-ccCCCCCCEEEccCCcCcc
Q 046382 177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPE-RMATGCFSLKILALSNNSLQGHIFSK-KFNLTNLMRLQLDGNKFIG 254 (691)
Q Consensus 177 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~ 254 (691)
|.+++..|..|+++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 666655566666666666666666666533332 22345666666666666666554443 5566666666666666665
Q ss_pred cCCccccCC--CCCCEEEccCCcCCCcchhh--------hhcCCCCCEEecCCCccCCCcchhhcCC---CCCCEEEccC
Q 046382 255 EIPESLSKC--YLLGGLYLSDNHLSGEIPRW--------LGNLSALEGIRMPNNNLEGPIPIEFCQL---SALKILDLSN 321 (691)
Q Consensus 255 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~ 321 (691)
..+..+..+ ..|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 555555444 45666666666665433322 2245677777777777766555555433 6777777777
Q ss_pred CcCcccCCCCCCCCcccEEEccCCccccccccccC--CCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccC
Q 046382 322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH--DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEI 399 (691)
Q Consensus 322 n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 399 (691)
|...+..... +.+.+.....+. ..++|+.|++++|.+++..|..+..+++|++|++++|++++..
T Consensus 249 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 249 SYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp CTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccccch-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 7654332111 111111111122 2468999999999999888888999999999999999999887
Q ss_pred CcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCc
Q 046382 400 PVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNM 479 (691)
Q Consensus 400 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (691)
+..|..+++|++|++++|.+++
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~---------------------------------------------------------- 337 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGS---------------------------------------------------------- 337 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCE----------------------------------------------------------
T ss_pred hhHhcCcccCCEEECCCCccCC----------------------------------------------------------
Confidence 8888887788777777777653
Q ss_pred cceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccccc
Q 046382 480 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV 559 (691)
Q Consensus 480 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 559 (691)
..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..
T Consensus 338 ------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 338 ------------------------IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ------------------------ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ------------------------cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 33445556666666677777666666666777777777777777777655556667
Q ss_pred CCCCCeEEccCCcccccCCC
Q 046382 560 LNTLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 560 l~~L~~L~l~~N~l~~~~p~ 579 (691)
+++|+.|++++|++++..|.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 77777777777777766664
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.5e-39 Score=341.69 Aligned_cols=287 Identities=24% Similarity=0.252 Sum_probs=124.4
Q ss_pred ccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCC-------------CEEEccCCcccccCC
Q 046382 69 FQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNL-------------VMLLLANNSLFGSFR 135 (691)
Q Consensus 69 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~~ 135 (691)
.+|++|+++++.+ +.+|..++++++|++|++++|.+.+.+|..+ +++++| ++|++++|++++...
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 3677777777776 5667777777777777777777666666653 455543 555555555543221
Q ss_pred cCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcC
Q 046382 136 MPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGC 215 (691)
Q Consensus 136 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 215 (691)
..++|++|++++|.++ .+|.. +++|++|++++|.+++ ++.. .++|++|++++|.++ .+|. +..+
T Consensus 89 ----~~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l 152 (454)
T 1jl5_A 89 ----LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS 152 (454)
T ss_dssp ----CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred ----CcCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence 1245555555555555 24421 2455555555555542 1111 135555555555555 3442 3445
Q ss_pred CCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEec
Q 046382 216 FSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295 (691)
Q Consensus 216 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 295 (691)
++|++|++++|++++. +.. .++|++|++++|.+.+ +| .+..+++|+.|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 5555555555555431 211 2355555555555543 23 34555555555555555543 2211 134555555
Q ss_pred CCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCc
Q 046382 296 PNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375 (691)
Q Consensus 296 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 375 (691)
++|.+. .+| .+..+++|++|++++|.+.+. +. .+++|++|++++|.+++... ..++|+.|++++|.+++ +
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~-l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG-L 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE-E
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccccCc----ccCcCCEEECcCCccCc-c
Confidence 555554 233 244555555555555554432 11 12445555555555443211 12445555555554442 1
Q ss_pred chhhcCCCCccEEecccCcCc
Q 046382 376 PNRIDRLPQLNYLLLAHNYIK 396 (691)
Q Consensus 376 ~~~~~~l~~L~~L~L~~n~i~ 396 (691)
+. ..++|++|++++|+++
T Consensus 293 ~~---~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIR 310 (454)
T ss_dssp SC---CCTTCCEEECCSSCCS
T ss_pred cC---cCCcCCEEECcCCcCC
Confidence 11 0134455555555444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-38 Score=338.68 Aligned_cols=392 Identities=22% Similarity=0.261 Sum_probs=257.2
Q ss_pred CCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCcc-------------CEEEccCCcCcccC
Q 046382 92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNL-------------ATLDVSNNFFHGHI 158 (691)
Q Consensus 92 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~Ls~n~i~~~~ 158 (691)
.+.|++|++++|.+ +.+|..+ +++++|++|++++|++.+..|..++.+.+| ++|++++|.++ .+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence 46789999999988 6888875 889999999999999888888888888765 89999999888 56
Q ss_pred chhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccC
Q 046382 159 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN 238 (691)
Q Consensus 159 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 238 (691)
|. ..++|++|++++|.+++ +|.. +++|++|++++|.++ .++. ..++|++|++++|.+++ .+ .+..
T Consensus 87 p~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCC
Confidence 65 24689999999999886 5543 478999999999887 4543 12689999999999886 44 5888
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEE
Q 046382 239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD 318 (691)
Q Consensus 239 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 318 (691)
+++|++|++++|++++ +|..+ .+|+.|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 9999999999998875 45433 589999999999886 45 58888999999999998875 3322 25889999
Q ss_pred ccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc
Q 046382 319 LSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE 398 (691)
Q Consensus 319 L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 398 (691)
+++|.+. .++....+++|++|++++|++++... .+++|+.|++++|++++ +|.. +++|++|++++|++++.
T Consensus 222 l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 222 AGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred CcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 9999888 45555578899999999998886432 34789999999999885 4443 47899999999998863
Q ss_pred CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382 399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN 478 (691)
Q Consensus 399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (691)
+. ..++|+.|++++|++++ ++.
T Consensus 293 -~~---~~~~L~~L~l~~N~l~~-i~~----------------------------------------------------- 314 (454)
T 1jl5_A 293 -SE---LPPNLYYLNASSNEIRS-LCD----------------------------------------------------- 314 (454)
T ss_dssp -SC---CCTTCCEEECCSSCCSE-ECC-----------------------------------------------------
T ss_pred -cC---cCCcCCEEECcCCcCCc-ccC-----------------------------------------------------
Confidence 21 12688999999998863 111
Q ss_pred ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccc--cCCcc
Q 046382 479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--KIPPQ 556 (691)
Q Consensus 479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~ 556 (691)
..++|++|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|..
T Consensus 315 --------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 315 --------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp --------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred --------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 03578888898888885 5543 5788889999988884 555 46888899999998887 67777
Q ss_pred cccC-------------CCCCeEEccCCcccc--cCCCCCCCCCcCcCcccCCCCCCC
Q 046382 557 LIVL-------------NTLEVFKVAYNNLSG--KIPDRAQFSTFEEDSYEGNPFLCG 599 (691)
Q Consensus 557 l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~Np~~c~ 599 (691)
+..+ ++|+.|++++|++++ .+| .++..+.+.+|.+.|.
T Consensus 379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERVVDP 431 (454)
T ss_dssp CCEEECCC--------------------------------------------------
T ss_pred HHhhhhcccccccccccCcCCEEECCCCcCCccccch-----hhHhheeCcCcccCCc
Confidence 7776 789999999999987 444 3556666777666554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.4e-36 Score=322.42 Aligned_cols=345 Identities=26% Similarity=0.363 Sum_probs=202.6
Q ss_pred CCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcE
Q 046382 92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMD 171 (691)
Q Consensus 92 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 171 (691)
++++++|+++++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence 345677777776665 4554 4566777777777776655433 666677777777777666 3333 333667777
Q ss_pred EEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCc
Q 046382 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK 251 (691)
Q Consensus 172 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 251 (691)
|++++|.+++. +. +.++++|++|++++|.+. .++. +..+++|+.|+++ +.+.+. ..+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 77777766643 22 666777777777777666 3442 3556666666665 333322 225556666666666666
Q ss_pred CcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCC
Q 046382 252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSC 331 (691)
Q Consensus 252 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 331 (691)
+.+. ..+..+++|+.|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l------- 255 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI------- 255 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-------
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc-------
Confidence 5432 235555566666666665554333 44555555555555555432 2344445555555555544
Q ss_pred CCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCE
Q 046382 332 FSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL 411 (691)
Q Consensus 332 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 411 (691)
++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.
T Consensus 256 ----------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 256 ----------------SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp ----------------CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred ----------------ccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 43322 4555566666666666654322 5556666666666666654332 556666666
Q ss_pred EEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccccccc
Q 046382 412 IDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSM 491 (691)
Q Consensus 412 L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 491 (691)
|++++|++++..| +.. +++|
T Consensus 314 L~L~~n~l~~~~~--~~~----------------------------------------------------------l~~L 333 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSS----------------------------------------------------------LTKL 333 (466)
T ss_dssp EECCSSCCSCCGG--GGG----------------------------------------------------------CTTC
T ss_pred EECcCCcCCCchh--hcc----------------------------------------------------------CccC
Confidence 6666666654332 111 4566
Q ss_pred ceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccc
Q 046382 492 SGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 551 (691)
Q Consensus 492 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 551 (691)
++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6777777766643 356677777777777777776655 6677777777777777764
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-36 Score=323.04 Aligned_cols=356 Identities=23% Similarity=0.321 Sum_probs=265.9
Q ss_pred CCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccC
Q 046382 104 NLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSI 183 (691)
Q Consensus 104 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 183 (691)
.+.+.++. ..++++++|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..
T Consensus 35 ~~~~~i~~---~~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 35 NVTDTVSQ---TDLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT 106 (466)
T ss_dssp STTSEECH---HHHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred ccccccCh---hHhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccCh
Confidence 34444443 3467888899988887553 3 3777888888888888888 5554 344788888888888888544
Q ss_pred chhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCC
Q 046382 184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKC 263 (691)
Q Consensus 184 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 263 (691)
+ +.++++|++|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|+.|++++ .+.+. ..+..+
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l 176 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANL 176 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTC
T ss_pred h--hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccC
Confidence 3 888888888888888887 4554 46788888888888887753 2466777777777753 33322 225666
Q ss_pred CCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEcc
Q 046382 264 YLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLS 343 (691)
Q Consensus 264 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~ 343 (691)
++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++ +
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l-----------------------~ 229 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL-----------------------N 229 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC-----------------------C
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEEC-----------------------C
Confidence 6666666666666532 235555566666666665554333 344444555555 4
Q ss_pred CCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC
Q 046382 344 KNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI 423 (691)
Q Consensus 344 ~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 423 (691)
+|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++.+..
T Consensus 230 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred CCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence 4444433 346778999999999999996654 8899999999999999986544 889999999999999997533
Q ss_pred ChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee
Q 046382 424 PSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 503 (691)
Q Consensus 424 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 503 (691)
| +. .+++|++|++++|++++
T Consensus 304 ~--~~----------------------------------------------------------~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 304 P--IS----------------------------------------------------------NLKNLTYLTLYFNNISD 323 (466)
T ss_dssp G--GG----------------------------------------------------------GCTTCSEEECCSSCCSC
T ss_pred h--hc----------------------------------------------------------CCCCCCEEECcCCcCCC
Confidence 2 11 16899999999999997
Q ss_pred ccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382 504 EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 504 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 665 78999999999999999965 468999999999999999998877 88999999999999999985
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=332.15 Aligned_cols=345 Identities=18% Similarity=0.179 Sum_probs=190.2
Q ss_pred EEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 046382 195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274 (691)
Q Consensus 195 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 274 (691)
.++.+++.++ .+|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|+.|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3444444444 444432 234555555555555544445555555555555555555555555555555555555555
Q ss_pred cCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCcccccccc
Q 046382 275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLES 353 (691)
Q Consensus 275 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~ 353 (691)
.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 5554444445555555555555555554445555555555555555555554444333 445555555555555555555
Q ss_pred ccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhcccc
Q 046382 354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALS 433 (691)
Q Consensus 354 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 433 (691)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.+++..+..+..
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---- 246 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH---- 246 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT----
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC----
Confidence 5556666666666666666554455566666666666666555555544444456666666666665221122221
Q ss_pred CCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhccc
Q 046382 434 GGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLS 513 (691)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 513 (691)
+++|++|+|++|.+++..+..|..++
T Consensus 247 ------------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 247 ------------------------------------------------------LVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred ------------------------------------------------------ccccCeeECCCCcCCccChhhccccc
Confidence 45666666666666655555666666
Q ss_pred CCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccC
Q 046382 514 GIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEG 593 (691)
Q Consensus 514 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~ 593 (691)
+|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+....+.......+.+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~ 352 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR 352 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTT
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCc
Confidence 66666666666666666666666666666666666665555556666666666666666654322111111222344555
Q ss_pred CCCCCCCC
Q 046382 594 NPFLCGKP 601 (691)
Q Consensus 594 Np~~c~~~ 601 (691)
+...|..|
T Consensus 353 ~~~~C~~p 360 (477)
T 2id5_A 353 QQPTCATP 360 (477)
T ss_dssp CCCBEEES
T ss_pred cCceeCCc
Confidence 56666543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.1e-37 Score=328.08 Aligned_cols=366 Identities=19% Similarity=0.161 Sum_probs=227.1
Q ss_pred CCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCccc
Q 046382 78 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH 157 (691)
Q Consensus 78 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 157 (691)
.+......+..++++++|++|++++|.+++ +|. ++.+++|++|++++|++.+. + +..+++|++|++++|+++ .
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~ 99 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-N 99 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-C
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-e
Confidence 333444445566677778888888887773 453 47778888888888877664 2 677777777777777777 3
Q ss_pred CchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCccccc
Q 046382 158 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF 237 (691)
Q Consensus 158 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 237 (691)
++ + ..+++|++|++++|.+++. + ++.+++|++|++++|+++ .++ +..+++|++|++++|...+.. .+.
T Consensus 100 ~~--~-~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~ 167 (457)
T 3bz5_A 100 LD--V-TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVT 167 (457)
T ss_dssp CC--C-TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred ee--c-CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccc
Confidence 43 3 3467777777777777753 3 667777777777777776 343 345667777777776433322 355
Q ss_pred CCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEE
Q 046382 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317 (691)
Q Consensus 238 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 317 (691)
.+++|+.|++++|++++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|.+++ +| +..+++|++|
T Consensus 168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 56666666666666654 22 55566666666666666543 24555566666666665554 22 4455555555
Q ss_pred EccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcc
Q 046382 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG 397 (691)
Q Consensus 318 ~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 397 (691)
++++|.+.+.. ...+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|+..+
T Consensus 239 ~l~~N~l~~~~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 239 DCSVNPLTELD--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred EeeCCcCCCcC--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence 55555555432 112344444444432 23334444444443333 2334444444444444433
Q ss_pred cCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEec
Q 046382 398 EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTK 477 (691)
Q Consensus 398 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (691)
.+|. ..++|+.|++++
T Consensus 301 ~l~~---~~~~L~~L~l~~------------------------------------------------------------- 316 (457)
T 3bz5_A 301 LLDC---QAAGITELDLSQ------------------------------------------------------------- 316 (457)
T ss_dssp EEEC---TTCCCSCCCCTT-------------------------------------------------------------
T ss_pred eecc---CCCcceEechhh-------------------------------------------------------------
Confidence 3332 122233332222
Q ss_pred CccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccc
Q 046382 478 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL 557 (691)
Q Consensus 478 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 557 (691)
.++|++|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.+++.
T Consensus 317 ----------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----- 370 (457)
T 3bz5_A 317 ----------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----- 370 (457)
T ss_dssp ----------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----
T ss_pred ----------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----
Confidence 35788999999999974 3 8889999999999999985 35677788999999876
Q ss_pred ccCCCCCeEEccCCcccccCCC
Q 046382 558 IVLNTLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 558 ~~l~~L~~L~l~~N~l~~~~p~ 579 (691)
..+..|+.+++++|+++|.+|.
T Consensus 371 ~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 371 GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp EEEEECCCBCCBTTBEEEECCT
T ss_pred ceeeecCccccccCcEEEEcCh
Confidence 2445678889999999999886
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=326.50 Aligned_cols=325 Identities=20% Similarity=0.163 Sum_probs=290.7
Q ss_pred CEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCC
Q 046382 219 KILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN 298 (691)
Q Consensus 219 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 298 (691)
+.++.+++.++.. |..+ .++++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 5778888888754 4433 468999999999999888889999999999999999999888999999999999999999
Q ss_pred ccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcch
Q 046382 299 NLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN 377 (691)
Q Consensus 299 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~ 377 (691)
.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 9997777778999999999999999998877666 789999999999999999889999999999999999999987778
Q ss_pred hhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccc
Q 046382 378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC 457 (691)
Q Consensus 378 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (691)
.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|+..+.+|.....
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------- 222 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---------------------------- 222 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT----------------------------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc----------------------------
Confidence 8999999999999999999888889999999999999999887655543221
Q ss_pred cCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCC
Q 046382 458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLK 537 (691)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 537 (691)
..+|++|++++|.+++..+..+..+++|+.|+|++|.+++..+..|.+++
T Consensus 223 ------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 223 ------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp ------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred ------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 34899999999999965557899999999999999999988888999999
Q ss_pred cCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCCC
Q 046382 538 QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLSK 604 (691)
Q Consensus 538 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~~ 604 (691)
+|+.|+|++|++++..|..|..+++|+.|++++|++++..+. ...+..++.+++++|||.|+|++.|
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 999999999999999999999999999999999999987665 3557788999999999999997643
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-34 Score=309.53 Aligned_cols=356 Identities=20% Similarity=0.165 Sum_probs=271.6
Q ss_pred CccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEE
Q 046382 68 KFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATL 147 (691)
Q Consensus 68 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 147 (691)
+.+|++|++++|.+++. | .+..+++|++|++++|.+++ +| ++.+++|++|++++|++.+. .+..+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCCcCCEE
Confidence 33777777777777754 4 57788888888888888874 44 57888888888888888764 27788888888
Q ss_pred EccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccccc
Q 046382 148 DVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS 227 (691)
Q Consensus 148 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 227 (691)
++++|+++ .++ + ..+++|++|++++|.+++. + ++.+++|++|++++|...+.++ +..+++|+.|++++|+
T Consensus 112 ~L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKLT-KLD--V-SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCCS-CCC--C-TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred ECCCCcCC-eec--C-CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 88888888 455 3 3478888999988888864 2 7788889999998885544553 3568889999999998
Q ss_pred CCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchh
Q 046382 228 LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307 (691)
Q Consensus 228 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 307 (691)
+++.. +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+++..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---
Confidence 88742 67788899999999988764 37788899999999999986 44 778899999999999988653
Q ss_pred hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccE
Q 046382 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNY 387 (691)
Q Consensus 308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 387 (691)
+..+++|+.|++++|. |+.|++++|...+..+ +..+++|+.|++++|...+.+|. ..++|+.
T Consensus 250 ~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~ 311 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITE 311 (457)
T ss_dssp CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred HHHCCCCCEEeccCCC-------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceE
Confidence 4567788888887763 5567788887666554 46788999999999987766663 3455666
Q ss_pred EecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382 388 LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG 467 (691)
Q Consensus 388 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (691)
|++++| ++|++|++++|++++. + +..
T Consensus 312 L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~-------------------------------------- 337 (457)
T 3bz5_A 312 LDLSQN-------------PKLVYLYLNNTELTEL-D--VSH-------------------------------------- 337 (457)
T ss_dssp CCCTTC-------------TTCCEEECTTCCCSCC-C--CTT--------------------------------------
T ss_pred echhhc-------------ccCCEEECCCCccccc-c--ccc--------------------------------------
Confidence 655544 6788889998888752 2 111
Q ss_pred CcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc
Q 046382 468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547 (691)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 547 (691)
+++|+.|++++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|
T Consensus 338 --------------------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 338 --------------------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp --------------------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred --------------------CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence 5788889999998885 34567778888888865 35677888899999
Q ss_pred cccccCCccccc
Q 046382 548 LLHGKIPPQLIV 559 (691)
Q Consensus 548 ~l~~~~p~~l~~ 559 (691)
+++|.+|..+..
T Consensus 385 ~l~g~ip~~~~~ 396 (457)
T 3bz5_A 385 SLTIAVSPDLLD 396 (457)
T ss_dssp BEEEECCTTCBC
T ss_pred cEEEEcChhHhc
Confidence 999988876543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-35 Score=307.81 Aligned_cols=335 Identities=18% Similarity=0.181 Sum_probs=177.0
Q ss_pred CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245 (691)
Q Consensus 166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 245 (691)
++++++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 356666666666666444444566666666666666665 4444444556666666666666665555555666666666
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325 (691)
Q Consensus 246 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 325 (691)
++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 6666666543333445566666666666666555555555566666666666655532 2334455555555555544
Q ss_pred ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405 (691)
Q Consensus 326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 405 (691)
+.. .+++|++|++++|.+...... ..++|+.|++++|.+++. .++..+++|++|++++|++++..|..+..
T Consensus 200 ~~~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 200 TLA----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp EEE----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccC----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 221 123455555555544433211 123444444444444422 23444444444444444444444444444
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382 406 LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG 485 (691)
Q Consensus 406 l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (691)
+++|++|+
T Consensus 271 l~~L~~L~------------------------------------------------------------------------ 278 (390)
T 3o6n_A 271 MQRLERLY------------------------------------------------------------------------ 278 (390)
T ss_dssp CSSCCEEE------------------------------------------------------------------------
T ss_pred cccCCEEE------------------------------------------------------------------------
Confidence 44444444
Q ss_pred ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382 486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV 565 (691)
Q Consensus 486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 565 (691)
+++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.
T Consensus 279 ----------L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 279 ----------ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp ----------CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred ----------CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 44444442 2333445556666666666665 3444455666666666666666543 2 445566666
Q ss_pred EEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCC
Q 046382 566 FKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 566 L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
|++++|++.+.-. ...+..+....+.+++..|.++
T Consensus 344 L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 344 LTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp EECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred EEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 6666666654211 1223344445566777777654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.9e-34 Score=315.81 Aligned_cols=335 Identities=18% Similarity=0.181 Sum_probs=192.2
Q ss_pred CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245 (691)
Q Consensus 166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 245 (691)
+++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356677777777766555555666777777777777766 4444344566667777777776666666666666666666
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325 (691)
Q Consensus 246 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 325 (691)
++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66666666444444566666666666666666655656666666666666666665432 344556666666666554
Q ss_pred ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405 (691)
Q Consensus 326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 405 (691)
+.. .+++|+.|++++|.+....+.. .++|+.|++++|.+++. .++..+++|++|++++|.+++..|..|..
T Consensus 206 ~l~----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 206 TLA----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp EEE----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 321 2334555555555554332221 23455555555554431 33444444444444444444444444444
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382 406 LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG 485 (691)
Q Consensus 406 l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (691)
+++|+
T Consensus 277 l~~L~--------------------------------------------------------------------------- 281 (597)
T 3oja_B 277 MQRLE--------------------------------------------------------------------------- 281 (597)
T ss_dssp CSSCC---------------------------------------------------------------------------
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 44444
Q ss_pred ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382 486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV 565 (691)
Q Consensus 486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 565 (691)
.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.
T Consensus 282 -------~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 282 -------RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp -------EEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred -------EEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 44444444442 3444455666666666666666 45555666667777777777666442 445667777
Q ss_pred EEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCC
Q 046382 566 FKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 566 L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
|++++|++.+..+ ...+..+....+.+++..|+.+
T Consensus 350 L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 350 LTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp EECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred EEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 7777777765321 1223444455567777777653
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-33 Score=294.47 Aligned_cols=264 Identities=22% Similarity=0.249 Sum_probs=175.3
Q ss_pred CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL 221 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 221 (691)
++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence 45555555555555 455554444555666666666555555555556666666666666655 3443334555666666
Q ss_pred EcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382 222 ALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301 (691)
Q Consensus 222 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 301 (691)
++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 6666666544444445566666666666666655555566666666666666666543 2445667777777777665
Q ss_pred CCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcC
Q 046382 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR 381 (691)
Q Consensus 302 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~ 381 (691)
+ +...++|++|++++|.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 3 23345788888888887755332 257899999999988865 46888999999999999999888899999
Q ss_pred CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382 382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420 (691)
Q Consensus 382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 420 (691)
+++|++|++++|++++ ++..+..+++|++|++++|++.
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence 9999999999999985 3444556666666666666664
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-33 Score=286.80 Aligned_cols=304 Identities=22% Similarity=0.308 Sum_probs=183.5
Q ss_pred CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245 (691)
Q Consensus 166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 245 (691)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4677777777777763 33 3666777777777777776 4444 45667777777777766642 345666666666
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325 (691)
Q Consensus 246 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 325 (691)
++++|.+.+.. . +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 116 ~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l- 189 (347)
T 4fmz_A 116 YLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI- 189 (347)
T ss_dssp ECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-
T ss_pred ECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-
Confidence 66666665332 2 5556666666666664433322 25555556666666555553322 44555555555555544
Q ss_pred ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405 (691)
Q Consensus 326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 405 (691)
.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 190 ----------------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 190 ----------------------EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp ----------------------CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred ----------------------ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 33322 4455666666666666654332 5556666666666666654332 566
Q ss_pred CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382 406 LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG 485 (691)
Q Consensus 406 l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (691)
+++|++|++++|.+++. + .+.
T Consensus 242 l~~L~~L~l~~n~l~~~-~-~~~--------------------------------------------------------- 262 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-N-AVK--------------------------------------------------------- 262 (347)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGT---------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCC-h-hHh---------------------------------------------------------
Confidence 66666666666666521 1 110
Q ss_pred ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382 486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV 565 (691)
Q Consensus 486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 565 (691)
.+++|++|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..| +..+++|+.
T Consensus 263 -~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 263 -DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp -TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred -cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 145667777777776643 346677777777777777777777777777777777777777776555 667777777
Q ss_pred EEccCCccc
Q 046382 566 FKVAYNNLS 574 (691)
Q Consensus 566 L~l~~N~l~ 574 (691)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 777777764
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.7e-33 Score=285.55 Aligned_cols=306 Identities=20% Similarity=0.274 Sum_probs=212.7
Q ss_pred cCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCC
Q 046382 90 YHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGL 169 (691)
Q Consensus 90 ~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L 169 (691)
..+++|++|+++++.+. .++. +..+++|++|++++|++.+..+ +..+++|++|++++|.++ .++ . +..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~-~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-A-LQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-G-GTTCTTC
T ss_pred hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-H-HcCCCcC
Confidence 34566777777776665 4443 4667777777777776654433 666777777777777666 443 2 3336677
Q ss_pred cEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccC
Q 046382 170 MDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249 (691)
Q Consensus 170 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (691)
++|++++|.+.+. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 7777777776643 22 66777777777777754433333 3567777777777777665433 56677777777777
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCC
Q 046382 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLP 329 (691)
Q Consensus 250 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 329 (691)
|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~ 259 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N 259 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence 77664322 6677777777777777765443 6677788888888887775433 67778888888888877653 3
Q ss_pred CCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCC
Q 046382 330 SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 409 (691)
Q Consensus 330 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 409 (691)
....+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..| +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 344677888888888888765 357788899999999999988888888899999999999999886655 7788999
Q ss_pred CEEEccCCCCC
Q 046382 410 RLIDLSHNNLS 420 (691)
Q Consensus 410 ~~L~l~~n~l~ 420 (691)
++|++++|+++
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999875
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.4e-34 Score=288.81 Aligned_cols=258 Identities=32% Similarity=0.546 Sum_probs=206.3
Q ss_pred CCCEEEccCCcCCC--cchhhhhcCCCCCEEecCC-CccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEE
Q 046382 265 LLGGLYLSDNHLSG--EIPRWLGNLSALEGIRMPN-NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVH 341 (691)
Q Consensus 265 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~ 341 (691)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..++ +|++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-----------------------~L~~L~ 107 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-----------------------QLHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-----------------------TCSEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-----------------------CCCEEE
Confidence 45555555555554 4455555555555555552 444444444444444 455555
Q ss_pred ccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCC-CCCEEEccCCCCC
Q 046382 342 LSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK-EVRLIDLSHNNLS 420 (691)
Q Consensus 342 l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~ 420 (691)
+++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 555555555666677788888888888888888888888899999999999999888888888887 8999999999998
Q ss_pred CCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCe
Q 046382 421 GHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK 500 (691)
Q Consensus 421 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 500 (691)
+.+|..+.. ++ |++|++++|.
T Consensus 188 ~~~~~~~~~----------------------------------------------------------l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 188 GKIPPTFAN----------------------------------------------------------LN-LAFVDLSRNM 208 (313)
T ss_dssp EECCGGGGG----------------------------------------------------------CC-CSEEECCSSE
T ss_pred ccCChHHhC----------------------------------------------------------Cc-ccEEECcCCc
Confidence 777776543 33 8999999999
Q ss_pred eeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCC
Q 046382 501 LTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 580 (691)
Q Consensus 501 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 580 (691)
+++..|..+..+++|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999976666 889999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCcCcccCCCCCCCCCCCCCC
Q 046382 581 AQFSTFEEDSYEGNPFLCGKPLSKSC 606 (691)
Q Consensus 581 ~~~~~~~~~~~~~Np~~c~~~l~~~c 606 (691)
..++.++.+++.|||++|+.|+. .|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccccccChHHhcCCCCccCCCCC-CC
Confidence 88999999999999999998765 35
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-33 Score=308.66 Aligned_cols=313 Identities=21% Similarity=0.217 Sum_probs=240.7
Q ss_pred CCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 046382 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGL 269 (691)
Q Consensus 190 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 269 (691)
+.+++.+++++|.+. .+|..++..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567888888888887 7887777788888888888888887777777778888888888888777666667777777777
Q ss_pred EccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccc
Q 046382 270 YLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEG 349 (691)
Q Consensus 270 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~ 349 (691)
++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------- 186 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------------------- 186 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----------------------
Confidence 7777777755555566777777777777777666666666666666666666665532
Q ss_pred ccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhh
Q 046382 350 RLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429 (691)
Q Consensus 350 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 429 (691)
. +..+++|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..
T Consensus 187 -~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 187 -D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp -C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG
T ss_pred -C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc
Confidence 1 2334566666666666653 234456778888888776443322 36788999999988742 22221
Q ss_pred ccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhh
Q 046382 430 TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 509 (691)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 509 (691)
+++|+.|+|++|.+++..|..|
T Consensus 253 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 253 ----------------------------------------------------------YPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp ----------------------------------------------------------CTTCSEEECCSSCCCEEESGGG
T ss_pred ----------------------------------------------------------CCCCCEEECCCCccCCCCHHHh
Confidence 6789999999999999999999
Q ss_pred hcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcC
Q 046382 510 GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEED 589 (691)
Q Consensus 510 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~ 589 (691)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.. ...++.++.+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L 350 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL 350 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEE
Confidence 999999999999999995 5777788999999999999999 67778899999999999999998763 4567789999
Q ss_pred cccCCCCCCCCC
Q 046382 590 SYEGNPFLCGKP 601 (691)
Q Consensus 590 ~~~~Np~~c~~~ 601 (691)
++++|||.|+|.
T Consensus 351 ~l~~N~~~~~~~ 362 (597)
T 3oja_B 351 TLSHNDWDCNSL 362 (597)
T ss_dssp ECCSSCEEHHHH
T ss_pred EeeCCCCCChhH
Confidence 999999999874
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.8e-35 Score=315.49 Aligned_cols=379 Identities=19% Similarity=0.148 Sum_probs=222.9
Q ss_pred CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccc----cCchhhhCCCCCCEEeccccccccccchhHhhcCC-
Q 046382 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISDNQLTGEIPERMATGCF- 216 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 216 (691)
++|++|++++|++++.....++..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4667777777776643333434446777777777777663 23556667777777777777776545555555555
Q ss_pred ---CCCEEEcccccCCc----cCcccccCCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEEccCCcCCCcc----
Q 046382 217 ---SLKILALSNNSLQG----HIFSKKFNLTNLMRLQLDGNKFIGEIPESL-----SKCYLLGGLYLSDNHLSGEI---- 280 (691)
Q Consensus 217 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~---- 280 (691)
+|++|++++|.++. ..+..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777764 235556677777777777777654333222 22456777777777776533
Q ss_pred hhhhhcCCCCCEEecCCCccCCCcchhhc-----CCCCCCEEEccCCcCcccC----CCCC-CCCcccEEEccCCccccc
Q 046382 281 PRWLGNLSALEGIRMPNNNLEGPIPIEFC-----QLSALKILDLSNNSIFGTL----PSCF-SPAHIEQVHLSKNKIEGR 350 (691)
Q Consensus 281 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~----~~~~-~~~~L~~L~l~~n~i~~~ 350 (691)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+.. +..+ .+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44555667777777777776544333332 2456777777777665421 1111 356666666666666543
Q ss_pred c-----ccccCCCCCccEEeccCCCCCCC----cchhhcCCCCccEEecccCcCcccCCcCCC-----CCCCCCEEEccC
Q 046382 351 L-----ESIIHDSPYLVTLDLSYNRLHGS----IPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-----QLKEVRLIDLSH 416 (691)
Q Consensus 351 ~-----~~~~~~~~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~ 416 (691)
. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 22233466777777777777643 455555667777777777776543322221 225677777777
Q ss_pred CCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEc
Q 046382 417 NNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDL 496 (691)
Q Consensus 417 n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 496 (691)
|.+++.....+...- ..+++|++|++
T Consensus 323 n~l~~~~~~~l~~~l------------------------------------------------------~~~~~L~~L~L 348 (461)
T 1z7x_W 323 CSFTAACCSHFSSVL------------------------------------------------------AQNRFLLELQI 348 (461)
T ss_dssp SCCBGGGHHHHHHHH------------------------------------------------------HHCSSCCEEEC
T ss_pred CCCchHHHHHHHHHH------------------------------------------------------hhCCCccEEEc
Confidence 776543211111100 01456677777
Q ss_pred CCCeeeeccchhhhc-----ccCCCeEeCCCCcCCc----ccchhhcCCCcCCEEeCCCccccccCCcccc-----cCCC
Q 046382 497 SCNKLTGEIPTQIGY-----LSGIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-----VLNT 562 (691)
Q Consensus 497 s~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~ 562 (691)
++|.+++..+..+.. .++|++|+|++|.+++ .+|..+..+++|++|++++|++++.....+. ...+
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~ 428 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 428 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCC
T ss_pred cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcc
Confidence 777766544444432 4567777777777764 5566666677777777777776643221111 1234
Q ss_pred CCeEEccCCccc
Q 046382 563 LEVFKVAYNNLS 574 (691)
Q Consensus 563 L~~L~l~~N~l~ 574 (691)
|+.|++.++.+.
T Consensus 429 L~~L~~~~~~~~ 440 (461)
T 1z7x_W 429 LEQLVLYDIYWS 440 (461)
T ss_dssp CCEEECTTCCCC
T ss_pred hhheeecccccC
Confidence 666666655544
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=7.4e-35 Score=314.02 Aligned_cols=391 Identities=17% Similarity=0.137 Sum_probs=227.6
Q ss_pred CCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc----CCcCccCCCccCEEEccCCcCcccCchhhhhCCC--
Q 046382 94 DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS----FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLP-- 167 (691)
Q Consensus 94 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~-- 167 (691)
+|++|+++++++++.....++..+++|++|++++|++.+. ++..+..+++|++|++++|.+++..+..++..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4566666666665433333356666777777777766432 2344566677777777777776544555555455
Q ss_pred --CCcEEEccCCcccc----cCchhhhCCCCCCEEeccccccccccchhHhh----cCCCCCEEEcccccCCccC----c
Q 046382 168 --GLMDLNLSRNAFNG----SIPSSFADMKMLERLDISDNQLTGEIPERMAT----GCFSLKILALSNNSLQGHI----F 233 (691)
Q Consensus 168 --~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~----~ 233 (691)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 58888888887773 34677778888888888888876443443322 2345666666666665432 2
Q ss_pred ccccCCCCCCEEEccCCcCcccCCcccc-----CCCCCCEEEccCCcCCCc----chhhhhcCCCCCEEecCCCccCCCc
Q 046382 234 SKKFNLTNLMRLQLDGNKFIGEIPESLS-----KCYLLGGLYLSDNHLSGE----IPRWLGNLSALEGIRMPNNNLEGPI 304 (691)
Q Consensus 234 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~ 304 (691)
..+..+++|++|++++|.+....+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 2333445555555555555432222221 133455555555544432 2333444444444444444443211
Q ss_pred chhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccc----cccccCCCCCccEEeccCCCCCCCcchhh
Q 046382 305 PIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGR----LESIIHDSPYLVTLDLSYNRLHGSIPNRI 379 (691)
Q Consensus 305 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 379 (691)
...+. +..+ .+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+
T Consensus 244 ~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 244 MAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred HHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 11100 1111 244555555555555543 23445556777777777777764433333
Q ss_pred c-----CCCCccEEecccCcCccc----CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCc
Q 046382 380 D-----RLPQLNYLLLAHNYIKGE----IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRA 450 (691)
Q Consensus 380 ~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (691)
. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+...-
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l------------------- 365 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL------------------- 365 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-------------------
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH-------------------
Confidence 2 235788888888877654 344556678888888888887655444333210
Q ss_pred ccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee----ccchhhhcccCCCeEeCCCCcCC
Q 046382 451 SVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG----EIPTQIGYLSGIHALNLSHNNLT 526 (691)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~ 526 (691)
....++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 366 ----------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 366 ----------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp ----------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ----------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 0003578888999998886 67888888999999999999987
Q ss_pred cccchhhc-----CCCcCCEEeCCCccccccCCcc
Q 046382 527 GTIPTTFS-----NLKQIESLDLSYNLLHGKIPPQ 556 (691)
Q Consensus 527 ~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~ 556 (691)
+.....+. ...+|+.|++.++......++.
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred HHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 54222222 2346888888888776544443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-30 Score=267.95 Aligned_cols=290 Identities=24% Similarity=0.281 Sum_probs=170.5
Q ss_pred CCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEc
Q 046382 192 MLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYL 271 (691)
Q Consensus 192 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 271 (691)
+++.++++++.++ .+|..+ .++|+.|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666665 555543 245666666666665554555555566666666666555555555555555555555
Q ss_pred cCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccccc
Q 046382 272 SDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL 351 (691)
Q Consensus 272 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~ 351 (691)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. .+..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~ 165 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------------------SGFE 165 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---------------------GGSC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---------------------CCCC
Confidence 555554 2222222 455555555555554444444455555555555544431 0123
Q ss_pred ccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhcc
Q 046382 352 ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTA 431 (691)
Q Consensus 352 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 431 (691)
+..+..+ +|+.|++++|.+++ +|..+. ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-- 239 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-- 239 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--
Confidence 3344444 56666666666663 333322 56777777777777666666777777777777777776544433322
Q ss_pred ccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhc
Q 046382 432 LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 511 (691)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 511 (691)
+++|++|++++|+++ .+|..+..
T Consensus 240 --------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 240 --------------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGG
T ss_pred --------------------------------------------------------CCCCCEEECCCCcCe-ecChhhhc
Confidence 456777777777777 66666777
Q ss_pred ccCCCeEeCCCCcCCcccchhhcCC------CcCCEEeCCCcccc--ccCCcccccCCCCCeEEccCCc
Q 046382 512 LSGIHALNLSHNNLTGTIPTTFSNL------KQIESLDLSYNLLH--GKIPPQLIVLNTLEVFKVAYNN 572 (691)
Q Consensus 512 l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~ 572 (691)
+++|+.|++++|++++..+..|... .+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7777777777777776666666543 56777888888776 5666677777788888877764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.1e-30 Score=264.49 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=72.7
Q ss_pred CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382 168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247 (691)
Q Consensus 168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 247 (691)
+++.++++++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4556666655555 3333332 45555666655555 344433445555555555555555544555555555555555
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC--CcchhhcCCCCCCEEEccCCcCc
Q 046382 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIF 325 (691)
Q Consensus 248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~ 325 (691)
++|.++ .+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 555554 2232221 345555555555444444444444444444444444431 22333444444444444444433
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.6e-30 Score=266.74 Aligned_cols=245 Identities=25% Similarity=0.297 Sum_probs=202.6
Q ss_pred CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382 168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247 (691)
Q Consensus 168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 247 (691)
+++.++++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 7999999999998 5666553 68999999999998 666655688999999999999999888889999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC--CcchhhcCCCCCCEEEccCCcCc
Q 046382 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIF 325 (691)
Q Consensus 248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~ 325 (691)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 4555444 799999999999998777889999999999999999863 566777777 8999999999988
Q ss_pred ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405 (691)
Q Consensus 326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 405 (691)
+..... .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 ~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 186 GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp SCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred ccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 643333 267888888888888777777888888888888888888766667778888888888888887 56666777
Q ss_pred CCCCCEEEccCCCCCCCC
Q 046382 406 LKEVRLIDLSHNNLSGHI 423 (691)
Q Consensus 406 l~~L~~L~l~~n~l~~~~ 423 (691)
+++|++|++++|++++..
T Consensus 263 l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CTTCCEEECCSSCCCBCC
T ss_pred CccCCEEECCCCCCCccC
Confidence 888888888888776433
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.9e-32 Score=272.99 Aligned_cols=252 Identities=31% Similarity=0.499 Sum_probs=178.6
Q ss_pred CCCCEEEccCCcCcc--cCCccccCCCCCCEEEccC-CcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCE
Q 046382 240 TNLMRLQLDGNKFIG--EIPESLSKCYLLGGLYLSD-NHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI 316 (691)
Q Consensus 240 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 316 (691)
.+++.|++++|.+.+ .+|..+..+++|+.|++++ |.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8899999999999999995 9999899999999999999999999999888888999999999
Q ss_pred EEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCC-CccEEecccCcC
Q 046382 317 LDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLP-QLNYLLLAHNYI 395 (691)
Q Consensus 317 L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~i 395 (691)
|++++|.+.+..+. .+..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus 130 L~Ls~N~l~~~~p~-----------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPP-----------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCCG-----------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred EeCCCCccCCcCCh-----------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 99888887754443 334444555555555555444455555554 555555555555
Q ss_pred cccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEE
Q 046382 396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT 475 (691)
Q Consensus 396 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (691)
++..|..+..++ |+.|++++|.+++..|..+..
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------- 219 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------------------------------- 219 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------------------------
Confidence 555555555554 555566555555444433221
Q ss_pred ecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCc
Q 046382 476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 555 (691)
Q Consensus 476 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (691)
+++|+.|++++|.+++..|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++.+|.
T Consensus 220 ------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 220 ------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp ------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 45566666666666544443 56667777777777777767777777777777777777777777766
Q ss_pred ccccCCCCCeEEccCCc-ccc
Q 046382 556 QLIVLNTLEVFKVAYNN-LSG 575 (691)
Q Consensus 556 ~l~~l~~L~~L~l~~N~-l~~ 575 (691)
. ..+++|+.+++++|+ +.|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 5 666777777777776 444
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-29 Score=260.06 Aligned_cols=247 Identities=23% Similarity=0.224 Sum_probs=161.2
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 149 (691)
+++.++++++.++. +|..+. +.+++|++++|.+++ ++...++++++|++|++++|++.+..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 77888888777663 344332 568888888888874 44433577888888888888887777777888888888888
Q ss_pred cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEecccccccc-ccchhHhhcCCCCCEEEcccccC
Q 046382 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG-EIPERMATGCFSLKILALSNNSL 228 (691)
Q Consensus 150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l 228 (691)
++|+++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+....+..+++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 888877 6666554 578888888888776666677778888888888777752 12233345667777777777766
Q ss_pred CccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhh
Q 046382 229 QGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF 308 (691)
Q Consensus 229 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 308 (691)
+... ..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .+|..+
T Consensus 184 ~~l~-~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TTIP-QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CSCC-SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred ccCC-ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 6432 222 256666666666666555555666666666666666665554445555566666666666555 344445
Q ss_pred cCCCCCCEEEccCCcCcccC
Q 046382 309 CQLSALKILDLSNNSIFGTL 328 (691)
Q Consensus 309 ~~l~~L~~L~L~~n~i~~~~ 328 (691)
..+++|++|++++|.+.+..
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCC
T ss_pred ccCCCcCEEECCCCcCCccC
Confidence 55555555555555555433
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.7e-31 Score=297.40 Aligned_cols=394 Identities=13% Similarity=0.056 Sum_probs=205.8
Q ss_pred cCCCCCEEEccCCcccccCCcCccC-CC-ccCEEEccCCc-CcccCchhhhhCCCCCcEEEccCCccccc----Cchhhh
Q 046382 116 NNTNLVMLLLANNSLFGSFRMPIHS-HQ-NLATLDVSNNF-FHGHIPVEIGTYLPGLMDLNLSRNAFNGS----IPSSFA 188 (691)
Q Consensus 116 ~l~~L~~L~L~~n~~~~~~~~~l~~-l~-~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~ 188 (691)
++++|++|+|++|.+.+..+..+.. ++ +|++|++++|. ++......+...+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5666666666666554443333333 22 36666666654 22111112222356666666666665543 223344
Q ss_pred CCCCCCEEecccccccc----ccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCc---ccCCcccc
Q 046382 189 DMKMLERLDISDNQLTG----EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI---GEIPESLS 261 (691)
Q Consensus 189 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~ 261 (691)
.+++|++|++++|.+++ .++ .++..+++|+.|++++|.+.+ .+..+..+++|++|+++..... ...+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 56666666666666541 111 223456666666666666554 3344555666666666543211 12233455
Q ss_pred CCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc-hhhcCCCCCCEEEccCCcCccc-CCCCC-CCCccc
Q 046382 262 KCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP-IEFCQLSALKILDLSNNSIFGT-LPSCF-SPAHIE 338 (691)
Q Consensus 262 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~-~~~~~-~~~~L~ 338 (691)
.+++|+.|+++++.. ..++..+..+++|++|++++|.+.+... ..+..+++|++|++++ .+.+. ++... .+++|+
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence 566666666666433 2455556666667777777666543222 2245666667666662 22211 11111 345566
Q ss_pred EEEccC-----------Cccccc-cccccCCCCCccEEeccCCCCCCCcchhhcC-CCCccEEecc----cCcCccc---
Q 046382 339 QVHLSK-----------NKIEGR-LESIIHDSPYLVTLDLSYNRLHGSIPNRIDR-LPQLNYLLLA----HNYIKGE--- 398 (691)
Q Consensus 339 ~L~l~~-----------n~i~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-l~~L~~L~L~----~n~i~~~--- 398 (691)
+|++++ +.+++. .......+++|+.|+++.|.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 666662 344332 1122344667777777777766555555544 6677777775 4455432
Q ss_pred --CCcCCCCCCCCCEEEccCCC--CCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEE
Q 046382 399 --IPVQLCQLKEVRLIDLSHNN--LSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQF 474 (691)
Q Consensus 399 --~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (691)
++..+..+++|+.|++++|. +++..+..+.
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~---------------------------------------------- 459 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG---------------------------------------------- 459 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH----------------------------------------------
Confidence 11224456677777776543 3322222111
Q ss_pred EecCccceeccccccccceEEcCCCeeeec-cchhhhcccCCCeEeCCCCcCCcc-cchhhcCCCcCCEEeCCCcccccc
Q 046382 475 TTKNMSYYYQGRILTSMSGIDLSCNKLTGE-IPTQIGYLSGIHALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGK 552 (691)
Q Consensus 475 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ 552 (691)
..+++|++|++++|++++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|+++..
T Consensus 460 -----------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 460 -----------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp -----------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred -----------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 1145677777777776642 334456667777777777776533 333445667777777777776654
Q ss_pred CCccc-ccCCCCCeEEccC
Q 046382 553 IPPQL-IVLNTLEVFKVAY 570 (691)
Q Consensus 553 ~p~~l-~~l~~L~~L~l~~ 570 (691)
....+ ..+|.+....+..
T Consensus 529 ~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 529 GQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHhCCCcEEEEecC
Confidence 33323 2345555544443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.8e-31 Score=293.04 Aligned_cols=412 Identities=13% Similarity=0.056 Sum_probs=294.7
Q ss_pred CchHHhhcCCCCCEEEccCCccc---ccCCcCc------------cCCCccCEEEccCCcCcccCchhhhhCCCC-CcEE
Q 046382 109 FPNWLLENNTNLVMLLLANNSLF---GSFRMPI------------HSHQNLATLDVSNNFFHGHIPVEIGTYLPG-LMDL 172 (691)
Q Consensus 109 ~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~l------------~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~-L~~L 172 (691)
.|..++..+++|++|+++++... +..|..+ ..+++|++|++++|.+++..+..+...+++ |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 44555677778888888775421 1222222 268999999999999886666666553445 9999
Q ss_pred EccCCc-ccc-cCchhhhCCCCCCEEeccccccccccc---hhHhhcCCCCCEEEcccccCCcc----CcccccCCCCCC
Q 046382 173 NLSRNA-FNG-SIPSSFADMKMLERLDISDNQLTGEIP---ERMATGCFSLKILALSNNSLQGH----IFSKKFNLTNLM 243 (691)
Q Consensus 173 ~L~~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~ 243 (691)
++++|. ++. .++.....+++|++|++++|.+++... ..+...+++|++|++++|.+++. .+..+..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 999987 221 123334578999999999999874422 23456799999999999998732 333445789999
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcCC---CcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEcc
Q 046382 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS---GEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLS 320 (691)
Q Consensus 244 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 320 (691)
+|++++|.+.+ ++..+..+++|+.|+++..... ...+..+..+++|+.|+++++... ..+..+..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecC
Confidence 99999998875 5677888999999999864332 233345677889999999886443 567778888999999999
Q ss_pred CCcCcccCCC--CCCCCcccEEEccCCccccccccccCCCCCccEEeccC-----------CCCCCCc-chhhcCCCCcc
Q 046382 321 NNSIFGTLPS--CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY-----------NRLHGSI-PNRIDRLPQLN 386 (691)
Q Consensus 321 ~n~i~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~-----------n~i~~~~-~~~~~~l~~L~ 386 (691)
+|.+.+.... ...+++|++|+++++...+..+.....+++|++|++++ +.+++.. +.....+++|+
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 9987543322 23689999999994332333344456788999999993 5666432 23345689999
Q ss_pred EEecccCcCcccCCcCCCC-CCCCCEEEcc----CCCCCCCCCh-hhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382 387 YLLLAHNYIKGEIPVQLCQ-LKEVRLIDLS----HNNLSGHIPS-CLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS 460 (691)
Q Consensus 387 ~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (691)
+|+++.|++++..+..+.. +++|+.|+++ .|.+++.... .+...
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~------------------------------ 431 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL------------------------------ 431 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH------------------------------
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH------------------------------
Confidence 9999999998766655554 8899999997 5566532111 01100
Q ss_pred CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCe--eeeccchhhhc-ccCCCeEeCCCCcCCc-ccchhhcCC
Q 046382 461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK--LTGEIPTQIGY-LSGIHALNLSHNNLTG-TIPTTFSNL 536 (691)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l 536 (691)
+ ..+++|++|++++|. +++..+..+.. +++|+.|+|++|++++ ..+..+..+
T Consensus 432 ----------------------~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 487 (592)
T 3ogk_B 432 ----------------------L--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487 (592)
T ss_dssp ----------------------H--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred ----------------------H--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence 0 116789999998654 66665555544 8999999999999986 345667889
Q ss_pred CcCCEEeCCCcccccc-CCcccccCCCCCeEEccCCccccc
Q 046382 537 KQIESLDLSYNLLHGK-IPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
++|+.|+|++|.+++. ++.....+++|+.|++++|+++..
T Consensus 488 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9999999999998755 344456789999999999998754
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=259.11 Aligned_cols=250 Identities=23% Similarity=0.270 Sum_probs=166.5
Q ss_pred CEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCC
Q 046382 291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369 (691)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n 369 (691)
..++.++..++ .+|..+. ++++.|++++|.+.+..+..+ .+++|++|++++|.++++.+..+..+++|+.|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444444 2333322 356666666666665554444 5566666666666666666666777777777777777
Q ss_pred CCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCCh-hhhhccccCCCCcccCCCccccc
Q 046382 370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS-CLVNTALSGGHHEAVAPTSIWCG 448 (691)
Q Consensus 370 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~ 448 (691)
+++...+..+..+++|++|++++|++++..+..|..+++|++|++++|+..+.++. .+..
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~------------------- 183 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG------------------- 183 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-------------------
Confidence 77755555677777777777777777766666677777777777777544333322 1111
Q ss_pred CcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcc
Q 046382 449 RASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT 528 (691)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 528 (691)
+++|++|+|++|.++ .+| .+..+++|++|+|++|++++.
T Consensus 184 ---------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 184 ---------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp ---------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred ---------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 567777777777776 444 366777788888888877777
Q ss_pred cchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382 529 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS 603 (691)
Q Consensus 529 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~ 603 (691)
.|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+. ...+..++.+++++|||.|+|.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 777777778888888888888777777777777888888888887766555 345667777788888888888654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=9.5e-28 Score=257.00 Aligned_cols=249 Identities=21% Similarity=0.209 Sum_probs=123.1
Q ss_pred CEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCC
Q 046382 267 GGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKN 345 (691)
Q Consensus 267 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n 345 (691)
..++.++..++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 44555555554 2333222 355555555555555445555555555555555555554443333 3445555555555
Q ss_pred ccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC-cCcccCCcCCCCCCCCCEEEccCCCCCCCCC
Q 046382 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN-YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP 424 (691)
Q Consensus 346 ~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 424 (691)
.++...+..+..+++|+.|++++|+++...+..+..+++|++|++++| .+....+..|..+++|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L--------------- 198 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL--------------- 198 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC---------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC---------------
Confidence 554444444444555555555555544333334444445555555442 2222222334444444
Q ss_pred hhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeec
Q 046382 425 SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 504 (691)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 504 (691)
++|+|++|.+++
T Consensus 199 -------------------------------------------------------------------~~L~L~~n~l~~- 210 (452)
T 3zyi_A 199 -------------------------------------------------------------------KYLNLGMCNIKD- 210 (452)
T ss_dssp -------------------------------------------------------------------CEEECTTSCCSS-
T ss_pred -------------------------------------------------------------------CEEECCCCcccc-
Confidence 445555554442
Q ss_pred cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCC
Q 046382 505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQF 583 (691)
Q Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~ 583 (691)
+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+. ...+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 22 244455555555555555554455555555555555555555555555555555555555555555544333 2334
Q ss_pred CCcCcCcccCCCCCCCCCC
Q 046382 584 STFEEDSYEGNPFLCGKPL 602 (691)
Q Consensus 584 ~~~~~~~~~~Np~~c~~~l 602 (691)
..++.+++++|||.|+|.+
T Consensus 290 ~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCEECSTTT
T ss_pred cCCCEEEccCCCcCCCCCc
Confidence 4455555566666666654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=250.79 Aligned_cols=202 Identities=21% Similarity=0.159 Sum_probs=112.1
Q ss_pred CCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 046382 191 KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLY 270 (691)
Q Consensus 191 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 270 (691)
+.....+.+++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 33444566666666 666544 24666677776666665555666677777777777776666566666667777777
Q ss_pred ccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc-hhhcCCCCCCEEEccCCc-CcccCCCCC-CCCcccEEEccCCcc
Q 046382 271 LSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP-IEFCQLSALKILDLSNNS-IFGTLPSCF-SPAHIEQVHLSKNKI 347 (691)
Q Consensus 271 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~~~L~~L~l~~n~i 347 (691)
+++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+ .+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777765555556666677777777776664333 345566666666666663 333333222 344455555555544
Q ss_pred ccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396 (691)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 396 (691)
++..+..+..+++|++|++++|.+.......+..+++|++|++++|+++
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 4444444444444444444444443221122223444444444444443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=254.38 Aligned_cols=277 Identities=17% Similarity=0.136 Sum_probs=167.6
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEE
Q 046382 239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD 318 (691)
Q Consensus 239 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 318 (691)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344455677777766 4454433 4677777777777755555677777777777777777766666677777777777
Q ss_pred ccCCcCcccCCCCC-CCCcccEEEccCCccccccc-cccCCCCCccEEeccCC-CCCCCcchhhcCCCCccEEecccCcC
Q 046382 319 LSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE-SIIHDSPYLVTLDLSYN-RLHGSIPNRIDRLPQLNYLLLAHNYI 395 (691)
Q Consensus 319 L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~i 395 (691)
+++|.+.+..+..+ .+++|++|++++|.+++... ..+..+++|+.|++++| .+....+..+..+++|++|++++|++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777765444322 56677777777777665544 45666677777777776 35544455666667777777777777
Q ss_pred cccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEE
Q 046382 396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT 475 (691)
Q Consensus 396 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (691)
++..|..+..+++|++|++++|.+. .+|..+..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~---------------------------------------------- 219 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD---------------------------------------------- 219 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCST-THHHHHHH----------------------------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccc-cchhhhhh----------------------------------------------
Confidence 6666666666677777777776664 22222111
Q ss_pred ecCccceeccccccccceEEcCCCeeeeccchhh---hcccCCCeEeCCCCcCCc----ccchhhcCCCcCCEEeCCCcc
Q 046382 476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI---GYLSGIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNL 548 (691)
Q Consensus 476 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~ 548 (691)
.+++|++|++++|.+++..+..+ ...+.++.++|+++.+.+ .+|..+..+++|++|++++|+
T Consensus 220 -----------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 220 -----------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp -----------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred -----------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 14566666666666664433322 224455556666665543 245556666666666666666
Q ss_pred ccccCCcccccCCCCCeEEccCCccccc
Q 046382 549 LHGKIPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 549 l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
++...+..|..+++|+.|++++|++.+.
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 6633222345566666666666655543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.6e-28 Score=244.92 Aligned_cols=252 Identities=21% Similarity=0.258 Sum_probs=134.6
Q ss_pred EEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcc
Q 046382 268 GLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKI 347 (691)
Q Consensus 268 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i 347 (691)
.++.+++.++ .+|..+ .+++++|++++|.+....+..|..+++|++|++++|.+....
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------------------- 68 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG------------------- 68 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-------------------
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-------------------
Confidence 4555555554 223222 135555555555555333333455555555555555543221
Q ss_pred ccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChh
Q 046382 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSC 426 (691)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~ 426 (691)
..+..+..+++|+.|++++|.+. .++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..
T Consensus 69 --~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 69 --CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp --EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred --CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 11223334555555555555555 344445555566666666665554333 34555566666666666555433332
Q ss_pred hhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee-cc
Q 046382 427 LVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EI 505 (691)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 505 (691)
+.. +++|++|++++|.+++ ..
T Consensus 146 ~~~----------------------------------------------------------l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 146 FNG----------------------------------------------------------LSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp TTT----------------------------------------------------------CTTCCEEECTTCEEGGGEE
T ss_pred ccc----------------------------------------------------------CcCCCEEECCCCccccccc
Confidence 221 3456666666666654 35
Q ss_pred chhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCC-
Q 046382 506 PTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQF- 583 (691)
Q Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~- 583 (691)
|..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|. ...+
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 55566666666666666666655556666666666666666666655555566666666666666666665554 2223
Q ss_pred CCcCcCcccCCCCCCCCCC
Q 046382 584 STFEEDSYEGNPFLCGKPL 602 (691)
Q Consensus 584 ~~~~~~~~~~Np~~c~~~l 602 (691)
..++.+++++||+.|+|+.
T Consensus 248 ~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTCCEEECTTCCEECSGGG
T ss_pred ccCCEEEccCCCeecccCh
Confidence 3556666666666666653
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=4e-30 Score=286.40 Aligned_cols=398 Identities=17% Similarity=0.121 Sum_probs=207.1
Q ss_pred hcCCCCCEEEccCCcccccCCcCcc-CCCccCEEEccCC-cCcccCchhhhhCCCCCcEEEccCCcccccCchhhh----
Q 046382 115 ENNTNLVMLLLANNSLFGSFRMPIH-SHQNLATLDVSNN-FFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA---- 188 (691)
Q Consensus 115 ~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~---- 188 (691)
..+++|++|++++|.+.+..+..+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4556666666666655444333333 4566666666666 343222223333356666666666665543333332
Q ss_pred CCCCCCEEeccccc--cccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCc-------CcccCCcc
Q 046382 189 DMKMLERLDISDNQ--LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK-------FIGEIPES 259 (691)
Q Consensus 189 ~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 259 (691)
.+++|++|++++|. +.......+...+++|++|++++|...+..+..+..+++|+.|++..+. +.+ ++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 44566666666664 2211122223345666666666652111233444455666666654432 111 1224
Q ss_pred ccCCCCCCEE-EccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcch-hhcCCCCCCEEEccCCcCccc-CCCCC-CCC
Q 046382 260 LSKCYLLGGL-YLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPI-EFCQLSALKILDLSNNSIFGT-LPSCF-SPA 335 (691)
Q Consensus 260 ~~~l~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~-~~~ 335 (691)
+..+++|+.| .+.+... +.++..+..+++|++|++++|.+.+.... .+..+++|++|++++| +.+. .+... .++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 5556666666 2332221 23334444556666666666664422111 2345666666666665 2211 11111 245
Q ss_pred cccEEEccC---------Ccccccccccc-CCCCCccEEeccCCCCCCCcchhhc-CCCCccEEecc--c----CcCccc
Q 046382 336 HIEQVHLSK---------NKIEGRLESII-HDSPYLVTLDLSYNRLHGSIPNRID-RLPQLNYLLLA--H----NYIKGE 398 (691)
Q Consensus 336 ~L~~L~l~~---------n~i~~~~~~~~-~~~~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~i~~~ 398 (691)
+|++|++.+ +.+++.....+ ..+++|+.|+++.|.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 666666622 33433222222 2367777777777777654444443 46777777777 3 344421
Q ss_pred C-----CcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEE
Q 046382 399 I-----PVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQ 473 (691)
Q Consensus 399 ~-----~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (691)
. +..+..+++|+.|++++ .+++..+..+..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-------------------------------------------- 453 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-------------------------------------------- 453 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--------------------------------------------
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--------------------------------------------
Confidence 1 11244566777777765 444322222211
Q ss_pred EEecCccceeccccccccceEEcCCCeeeeccchhh-hcccCCCeEeCCCCcCCcccch-hhcCCCcCCEEeCCCccccc
Q 046382 474 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHG 551 (691)
Q Consensus 474 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~ 551 (691)
.+++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++.
T Consensus 454 -------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 454 -------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 14667777887777765544444 5677788888888877543333 34457778888888877754
Q ss_pred cCCccc-ccCCCCCeEEccCCcc
Q 046382 552 KIPPQL-IVLNTLEVFKVAYNNL 573 (691)
Q Consensus 552 ~~p~~l-~~l~~L~~L~l~~N~l 573 (691)
.....+ ..++.|+...+..+.-
T Consensus 521 ~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 521 GACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHHHHhCCCCEEEEecCCCc
Confidence 433334 4566666666655543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.8e-27 Score=238.84 Aligned_cols=247 Identities=20% Similarity=0.238 Sum_probs=154.0
Q ss_pred CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccc--cchhHhhcCCCCCEEE
Q 046382 145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGE--IPERMATGCFSLKILA 222 (691)
Q Consensus 145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~ 222 (691)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+ .++++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence 56777777777 7776543 5788888888887755555577788888888888877621 13333 3466777777
Q ss_pred cccccCCccCcccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382 223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301 (691)
Q Consensus 223 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 301 (691)
+++|.+.. .+..+..+++|++|++++|++.+..+ ..+. .+++|++|++++|.+.
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL------------------------SLRNLIYLDISHTHTR 139 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTT------------------------TCTTCCEEECTTSCCE
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhh------------------------hccCCCEEECCCCcCC
Confidence 77766653 23345556666666666665543322 2334 4444444444444444
Q ss_pred CCcchhhcCCCCCCEEEccCCcCcc-cCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhh
Q 046382 302 GPIPIEFCQLSALKILDLSNNSIFG-TLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI 379 (691)
Q Consensus 302 ~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 379 (691)
+..+..+..+++|++|++++|.+.+ ..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 4444445555555555555555543 223222 45566666666666666656666777777777777777776655567
Q ss_pred cCCCCccEEecccCcCcccCCcCCCCCC-CCCEEEccCCCCCC
Q 046382 380 DRLPQLNYLLLAHNYIKGEIPVQLCQLK-EVRLIDLSHNNLSG 421 (691)
Q Consensus 380 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~ 421 (691)
..+++|++|++++|++++..+..+..++ +|+.|++++|++.+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 7777777777777777777777777763 77777777777764
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1e-26 Score=233.01 Aligned_cols=222 Identities=22% Similarity=0.206 Sum_probs=122.5
Q ss_pred EEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 046382 195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274 (691)
Q Consensus 195 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 274 (691)
+++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4444444444 444322 234555555555555444444555555555555555555444555555555555555555
Q ss_pred c-CCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccc
Q 046382 275 H-LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE 352 (691)
Q Consensus 275 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~ 352 (691)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 444444555555556666666555555545555555566666666665554443333 44555555555555555555
Q ss_pred cccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382 353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420 (691)
Q Consensus 353 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 420 (691)
..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55556666666666666666555556666666666666666666544445666666666666666654
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.9e-27 Score=235.99 Aligned_cols=204 Identities=21% Similarity=0.203 Sum_probs=96.6
Q ss_pred CCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCC-CCCCcchhhcCCCCccEEec
Q 046382 313 ALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNR-LHGSIPNRIDRLPQLNYLLL 390 (691)
Q Consensus 313 ~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~L 390 (691)
++++|++++|.+.+..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444443333222 33444444444444444444444445555555555554 44333444445555555555
Q ss_pred ccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcc
Q 046382 391 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEE 470 (691)
Q Consensus 391 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (691)
++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------- 151 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD----------------------------------------- 151 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------------------------------
Confidence 555555444444555555555555555544222221111
Q ss_pred cEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382 471 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550 (691)
Q Consensus 471 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (691)
+++|++|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++
T Consensus 152 -----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 152 -----------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp -----------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 344555555555555433444555555555555555555444555555555555555555555
Q ss_pred ccCCcccccCCCCCeEEccCCccc
Q 046382 551 GKIPPQLIVLNTLEVFKVAYNNLS 574 (691)
Q Consensus 551 ~~~p~~l~~l~~L~~L~l~~N~l~ 574 (691)
+..+..+..+++|+.|++++|++.
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCCHHHcccCcccCEEeccCCCcc
Confidence 444444555555555555555444
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.8e-26 Score=247.16 Aligned_cols=247 Identities=22% Similarity=0.257 Sum_probs=199.9
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEcc
Q 046382 241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLS 320 (691)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 320 (691)
....++.++..++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888877 5665543 689999999999998888999999999999999999998888899999999999999
Q ss_pred CCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCC-CCCCCcchhhcCCCCccEEecccCcCccc
Q 046382 321 NNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN-RLHGSIPNRIDRLPQLNYLLLAHNYIKGE 398 (691)
Q Consensus 321 ~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 398 (691)
+|.+.+..+..+ .+++|++|++++|.++...+..+..+++|+.|++++| .+....+..+..+++|++|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 999998777766 6899999999999999988889999999999999995 55544445688999999999999999854
Q ss_pred CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382 399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN 478 (691)
Q Consensus 399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (691)
| .+..+++|+.|++++|++++..|..+..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 240 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------------------------- 240 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------------------------
T ss_pred -c-cccccccccEEECcCCcCcccCcccccC-------------------------------------------------
Confidence 3 4677788888888888877555544432
Q ss_pred ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382 479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550 (691)
Q Consensus 479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (691)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 241 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 241 ---------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ---------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ---------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 456777777777777666777777777777777777777666666677777777777777665
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.4e-29 Score=278.89 Aligned_cols=396 Identities=14% Similarity=0.095 Sum_probs=199.7
Q ss_pred cccEEEecCCCCCCCcchhhc-CCCCCCEEEccCC-CCcccCchHHhhcCCCCCEEEccCCcccccCCcCc----cCCCc
Q 046382 70 QLTSISLSGYIDGGTFPKFLY-HQHDLKNADLSHL-NLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPI----HSHQN 143 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~ 143 (691)
+|++|++++|.+++..+..+. .+++|++|++++| .+++.....+..++++|++|++++|.+.+..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 566666666666555444443 4666666666666 33322222333456666666666666544332222 24556
Q ss_pred cCEEEccCCc--CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEecccc-------ccccccchhHhhc
Q 046382 144 LATLDVSNNF--FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN-------QLTGEIPERMATG 214 (691)
Q Consensus 144 L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~~ 214 (691)
|++|++++|. ++......+...+++|++|++++|...+.++..+..+++|++|+++.+ .+. .++..+ .+
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~~ 263 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-SG 263 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-HT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-hc
Confidence 6666666664 221111122222456666666665222224555556666666664333 222 222222 44
Q ss_pred CCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcch-hhhhcCCCCCEE
Q 046382 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIP-RWLGNLSALEGI 293 (691)
Q Consensus 215 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L 293 (691)
+++|+.|. .+.+... ..++..+..+++|+.|++++|.+++... ..+..+++|++|
T Consensus 264 ~~~L~~Ls-----------------------~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 264 CKELRCLS-----------------------GFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319 (594)
T ss_dssp CTTCCEEE-----------------------CCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred CCCccccc-----------------------CCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence 55555552 1211111 1122222234444444444444332211 113344555555
Q ss_pred ecCCCccCCC-cchhhcCCCCCCEEEccC---------CcCcccCCCCC--CCCcccEEEccCCccccccccccC-CCCC
Q 046382 294 RMPNNNLEGP-IPIEFCQLSALKILDLSN---------NSIFGTLPSCF--SPAHIEQVHLSKNKIEGRLESIIH-DSPY 360 (691)
Q Consensus 294 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~-~~~~ 360 (691)
++++| +... .+.....+++|++|++++ +.+++.....+ .+++|++|.+..+.+++.....+. .+++
T Consensus 320 ~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~ 398 (594)
T 2p1m_B 320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398 (594)
T ss_dssp EEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT
T ss_pred eCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC
Confidence 55544 2111 111112344555555522 22221110000 245666666666666544333333 4677
Q ss_pred ccEEecc--C----CCCCCC-----cchhhcCCCCccEEecccCcCcccCCcCCCC-CCCCCEEEccCCCCCCCCChhhh
Q 046382 361 LVTLDLS--Y----NRLHGS-----IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPSCLV 428 (691)
Q Consensus 361 L~~L~ls--~----n~i~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~p~~~~ 428 (691)
|+.|+++ + +.+++. ++..+..+++|++|++++ .+++.....+.. +++|+.|++++|.+++..+..+.
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 477 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL 477 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH
T ss_pred cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH
Confidence 7777777 3 444421 122356677888888876 555444444443 77888888888887643332221
Q ss_pred hccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccch-
Q 046382 429 NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT- 507 (691)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~- 507 (691)
. .+++|++|+|++|.+++....
T Consensus 478 ~---------------------------------------------------------~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 478 S---------------------------------------------------------GCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp H---------------------------------------------------------HCTTCCEEEEESCSCCHHHHHH
T ss_pred h---------------------------------------------------------cCCCcCEEECcCCCCcHHHHHH
Confidence 1 157788888888888644433
Q ss_pred hhhcccCCCeEeCCCCcCCcccchhh-cCCCcCCEEeCCCcccc
Q 046382 508 QIGYLSGIHALNLSHNNLTGTIPTTF-SNLKQIESLDLSYNLLH 550 (691)
Q Consensus 508 ~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~ 550 (691)
....+++|+.|++++|+++......+ ..+++|+...+..+.-.
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 34558889999999998854333334 45677777666665443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-28 Score=248.55 Aligned_cols=264 Identities=21% Similarity=0.206 Sum_probs=183.7
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCc
Q 046382 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNS 323 (691)
Q Consensus 244 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 323 (691)
..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34445555443333444555677777777777776666777777777777777777765443 6777777777777777
Q ss_pred CcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCC
Q 046382 324 IFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL 403 (691)
Q Consensus 324 i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 403 (691)
+.+..+ .++|++|++++|.+++..+. .+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 92 l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 764432 36777788887777766543 35678888888888886666677777888888888888876666555
Q ss_pred -CCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccce
Q 046382 404 -CQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYY 482 (691)
Q Consensus 404 -~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (691)
..+++|++|++++|.+++. |..
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~~~-------------------------------------------------------- 187 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-KGQ-------------------------------------------------------- 187 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-ECC--------------------------------------------------------
T ss_pred hhccCcCCEEECCCCcCccc-ccc--------------------------------------------------------
Confidence 3677888888888877632 110
Q ss_pred eccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc-ccCCcccccCC
Q 046382 483 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLN 561 (691)
Q Consensus 483 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~ 561 (691)
..+++|++|++++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++
T Consensus 188 ---~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 188 ---VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp ---CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred ---cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 015678888888888874 4445778888888888888887 46777888888888888888887 66777777788
Q ss_pred CCCeEEccCC-cccccCC
Q 046382 562 TLEVFKVAYN-NLSGKIP 578 (691)
Q Consensus 562 ~L~~L~l~~N-~l~~~~p 578 (691)
+|+.+++++| .+.|..|
T Consensus 263 ~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHHHHSSSS
T ss_pred cceEEECCCchhccCCch
Confidence 8888887744 4554433
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.8e-26 Score=240.46 Aligned_cols=249 Identities=22% Similarity=0.191 Sum_probs=179.8
Q ss_pred ccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEE
Q 046382 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILA 222 (691)
Q Consensus 143 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 222 (691)
..+.++.++..++ .+|..+. ++++.|+|++|.++...+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 4567888888888 8887664 58889999999998877788888999999999999888 66666667788888888
Q ss_pred cccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC
Q 046382 223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG 302 (691)
Q Consensus 223 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 302 (691)
+++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i---------------------- 176 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI---------------------- 176 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE----------------------
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee----------------------
Confidence 8888887666666777777777777777776655556666666666666663322222
Q ss_pred CcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCC
Q 046382 303 PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL 382 (691)
Q Consensus 303 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l 382 (691)
.+..|..+++|++|++++|.+. .++....+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred -CcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 2223444455555555555544 22333456667777777777777767777778888888888888877777777788
Q ss_pred CCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382 383 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420 (691)
Q Consensus 383 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 420 (691)
++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88888888888888777777778888888888888775
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.6e-26 Score=231.64 Aligned_cols=226 Identities=20% Similarity=0.246 Sum_probs=166.7
Q ss_pred CCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcE
Q 046382 92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMD 171 (691)
Q Consensus 92 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 171 (691)
.+++++|++++|.++ .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.. +++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCE
T ss_pred ccceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCE
Confidence 356677777777766 566554 45677777777777765 55666667777777777777776 66666554 667777
Q ss_pred EEccCCcccccCchhhhC---------CCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCC
Q 046382 172 LNLSRNAFNGSIPSSFAD---------MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNL 242 (691)
Q Consensus 172 L~L~~n~i~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 242 (691)
|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+ ..+++|++|++++|.+++ .+..+..+++|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 777776666666655543 788888888888887 777664 567888888888888875 34457778888
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCC
Q 046382 243 MRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322 (691)
Q Consensus 243 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 322 (691)
++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88888888887778888888888888888888887788888888888888888888888888888888888888888776
Q ss_pred cCc
Q 046382 323 SIF 325 (691)
Q Consensus 323 ~i~ 325 (691)
.+.
T Consensus 312 ~~~ 314 (328)
T 4fcg_A 312 LQA 314 (328)
T ss_dssp GSC
T ss_pred HHH
Confidence 554
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1e-25 Score=229.78 Aligned_cols=225 Identities=20% Similarity=0.213 Sum_probs=146.5
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 149 (691)
++++|+++++.+. .+|..+.++++|++|++++|.++ .+|..+ +++++|++|++++|.+. .+|..+..+++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 6666777766665 45555666666777777776666 566543 66667777777776665 44556666667777777
Q ss_pred cCCcCcccCchhhhh--------CCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382 150 SNNFFHGHIPVEIGT--------YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL 221 (691)
Q Consensus 150 s~n~i~~~~~~~~~~--------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 221 (691)
++|.+.+.+|..+.. .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ ..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-ccCCCCCEE
Confidence 766655566655431 2566677777776666 55666666667777777777666 455543 456667777
Q ss_pred EcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382 222 ALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301 (691)
Q Consensus 222 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 301 (691)
++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77776666666666666667777777766666666666666667777777776666666666666777766666655443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-26 Score=248.98 Aligned_cols=244 Identities=20% Similarity=0.214 Sum_probs=151.6
Q ss_pred CCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccC
Q 046382 289 ALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY 368 (691)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~ 368 (691)
+|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+ ...+++|++|++++|.+++..+ .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence 56666666666665555566666666666666666655443 3355666666666666654432 25677777777
Q ss_pred CCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCccccc
Q 046382 369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCG 448 (691)
Q Consensus 369 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 448 (691)
|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------------------- 166 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA------------------- 166 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-------------------
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-------------------
Confidence 776654332 3466777777777777666666666777777777777776555443321
Q ss_pred CcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcc
Q 046382 449 RASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT 528 (691)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 528 (691)
.+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++.
T Consensus 167 --------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 167 --------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp --------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred --------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence 14567777777777765422 23467777777777777754
Q ss_pred cchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc-ccCCC-CCCCCCcCcCccc-------CCCCCCC
Q 046382 529 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS-GKIPD-RAQFSTFEEDSYE-------GNPFLCG 599 (691)
Q Consensus 529 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~-~~~~~~~~~~~~~-------~Np~~c~ 599 (691)
+ ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|. ...+..+..+.+. +||+.|+
T Consensus 207 ~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~ 284 (487)
T 3oja_A 207 G-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (487)
T ss_dssp C-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCS
T ss_pred C-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCccccc
Confidence 3 346777777777777777774 5556777777777777777776 33222 2223333333443 7888887
Q ss_pred CCC
Q 046382 600 KPL 602 (691)
Q Consensus 600 ~~l 602 (691)
|+.
T Consensus 285 ~~~ 287 (487)
T 3oja_A 285 VPT 287 (487)
T ss_dssp STT
T ss_pred CCc
Confidence 753
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.8e-27 Score=242.02 Aligned_cols=255 Identities=18% Similarity=0.163 Sum_probs=124.3
Q ss_pred EEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccc
Q 046382 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225 (691)
Q Consensus 146 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 225 (691)
..+++.+.+. ..+..++..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNN 89 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcC
Confidence 3344444443 3333333334455555555555554444455555555555555555542222 34455555555555
Q ss_pred ccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc
Q 046382 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305 (691)
Q Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 305 (691)
|.+++.. ..++|++|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 5544321 124555555555555433222 23445555555555554444455555555555555555554444
Q ss_pred hhh-cCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCC
Q 046382 306 IEF-CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQ 384 (691)
Q Consensus 306 ~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~ 384 (691)
..+ ..+++|++|++++|.+.+. +....+++|++|++++|.+++..+. +..+++|+.|++++|+++ .+|..+..+++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 433 2455555555555555533 2222345555555555555543332 444555555555555555 34444555555
Q ss_pred ccEEecccCcCc-ccCCcCCCCCCCCCEEEcc
Q 046382 385 LNYLLLAHNYIK-GEIPVQLCQLKEVRLIDLS 415 (691)
Q Consensus 385 L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~ 415 (691)
|++|++++|++. +..+..+..+++|+.++++
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 555555555554 3344444445555555544
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.9e-25 Score=242.36 Aligned_cols=267 Identities=23% Similarity=0.325 Sum_probs=139.6
Q ss_pred CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382 168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247 (691)
Q Consensus 168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 247 (691)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++... .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 4666666666665 4444433 55666666666665 4544 24555555555555553221 3455555555
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCccc
Q 046382 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGT 327 (691)
Q Consensus 248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 327 (691)
++|.+++. |. .+ ++|+.|++++|.+++ +|. .+++|++|++++|.+.+.
T Consensus 109 s~N~l~~l-~~---~l------------------------~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 109 FSNPLTHL-PA---LP------------------------SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL 156 (622)
T ss_dssp CSCCCCCC-CC---CC------------------------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCC-CC---CC------------------------CCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc
Confidence 55554421 21 23 344444444444432 121 124555555555555432
Q ss_pred CCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCC
Q 046382 328 LPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 407 (691)
Q Consensus 328 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 407 (691)
. . .+++|+.|++++|.++++. ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|. .++
T Consensus 157 ~-~--~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~ 221 (622)
T 3g06_A 157 P-A--LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS 221 (622)
T ss_dssp C-C--CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT
T ss_pred C-C--ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC
Confidence 1 1 2345555555555555432 334556666666666653 222 23556666666666652 332 235
Q ss_pred CCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccc
Q 046382 408 EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI 487 (691)
Q Consensus 408 ~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (691)
+|+.|++++|++++ +|. .
T Consensus 222 ~L~~L~Ls~N~L~~-lp~-------------------------------------------------------------~ 239 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LPV-------------------------------------------------------------L 239 (622)
T ss_dssp TCCEEECCSSCCSC-CCC-------------------------------------------------------------C
T ss_pred CCCEEEccCCccCc-CCC-------------------------------------------------------------C
Confidence 56666666666652 221 0
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccC
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 560 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 560 (691)
+++|+.|+|++|.++ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 345666666666666 3443 4556666666666666 456666666666666666666666666555443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=238.88 Aligned_cols=262 Identities=22% Similarity=0.253 Sum_probs=203.9
Q ss_pred CCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecC
Q 046382 217 SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP 296 (691)
Q Consensus 217 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 296 (691)
+++.|++++|.++. .|..+. ++|+.|++++|.++ .+|. .+++|+.|++++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 46666666666663 333332 56777777777766 3333 45677788888887764 333 56888899999
Q ss_pred CCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc
Q 046382 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP 376 (691)
Q Consensus 297 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 376 (691)
+|.+++. |. .+++|+.|++++|.+.+... .+++|++|++++|.+++... .+++|+.|++++|.+++ +|
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc
Confidence 9888854 33 56899999999999986433 25899999999999986532 45789999999999995 55
Q ss_pred hhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCccccccc
Q 046382 377 NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISA 456 (691)
Q Consensus 377 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 456 (691)
..+++|++|++++|++++ +|.. +++|+.|++++|.++ .+|.
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~------------------------------- 218 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA------------------------------- 218 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC-------------------------------
T ss_pred ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC-------------------------------
Confidence 557899999999999985 4432 478999999999987 2332
Q ss_pred ccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCC
Q 046382 457 CLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL 536 (691)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 536 (691)
.+++|+.|++++|.+++ +| ..+++|+.|+|++|+|+. +|. .+
T Consensus 219 ------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~ 260 (622)
T 3g06_A 219 ------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LP 260 (622)
T ss_dssp ------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred ------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---cc
Confidence 14689999999999995 56 456899999999999994 555 67
Q ss_pred CcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382 537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 579 (691)
++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 89999999999999 7788999999999999999999987665
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.5e-27 Score=240.44 Aligned_cols=248 Identities=19% Similarity=0.243 Sum_probs=154.5
Q ss_pred CCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC-CCcchhhc-------CCCCCCEEEccCCcCcccCCCC---
Q 046382 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE-GPIPIEFC-------QLSALKILDLSNNSIFGTLPSC--- 331 (691)
Q Consensus 263 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~--- 331 (691)
.++|+.|++++|.+ .+|..+... |+.|++++|.+. ...+..+. .+++|++|++++|.+.+..+..
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 344433332 555666666553 22333332 4666666666666666554443
Q ss_pred CCCCcccEEEccCCccccccccccCCC-----CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc--CCcC--
Q 046382 332 FSPAHIEQVHLSKNKIEGRLESIIHDS-----PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE--IPVQ-- 402 (691)
Q Consensus 332 ~~~~~L~~L~l~~n~i~~~~~~~~~~~-----~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~-- 402 (691)
..+++|++|++++|.+++. +..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 2456666666666666655 4444444 6777777777777766667777777777777777776543 1222
Q ss_pred CCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccce
Q 046382 403 LCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYY 482 (691)
Q Consensus 403 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (691)
+..+++|++|++++|++++ ++......
T Consensus 197 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~---------------------------------------------------- 223 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMET-PSGVCSAL---------------------------------------------------- 223 (312)
T ss_dssp TTSCTTCCEEECTTSCCCC-HHHHHHHH----------------------------------------------------
T ss_pred hccCCCCCEEECCCCcCcc-hHHHHHHH----------------------------------------------------
Confidence 2677778888888877752 11110000
Q ss_pred eccccccccceEEcCCCeeeeccc-hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCC
Q 046382 483 YQGRILTSMSGIDLSCNKLTGEIP-TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN 561 (691)
Q Consensus 483 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 561 (691)
+ ..+++|++|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..++
T Consensus 224 ~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 224 A--AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp H--HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred H--hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 0 014677778888888776554 44556778888888888887 5566555 7788888888888755 55 77778
Q ss_pred CCCeEEccCCcccc
Q 046382 562 TLEVFKVAYNNLSG 575 (691)
Q Consensus 562 ~L~~L~l~~N~l~~ 575 (691)
+|+.|++++|++++
T Consensus 297 ~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 297 QVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECTTCTTTC
T ss_pred CCCEEeccCCCCCC
Confidence 88888888888765
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.2e-26 Score=235.39 Aligned_cols=202 Identities=28% Similarity=0.299 Sum_probs=90.5
Q ss_pred CCCCCCEEeccccccccccchhHh-hcCCCCCEEEcccccCCccCcccccCC-----CCCCEEEccCCcCcccCCccccC
Q 046382 189 DMKMLERLDISDNQLTGEIPERMA-TGCFSLKILALSNNSLQGHIFSKKFNL-----TNLMRLQLDGNKFIGEIPESLSK 262 (691)
Q Consensus 189 ~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~ 262 (691)
++++|++|++++|.+++.+|..++ ..+++|++|++++|++++. +..+..+ ++|++|++++|++.+..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 344444444444444444444332 3344444444444444443 3333333 55555555555555444455555
Q ss_pred CCCCCEEEccCCcCCCc--chhhh--hcCCCCCEEecCCCccCCC---cchhhcCCCCCCEEEccCCcCcccCCC--CCC
Q 046382 263 CYLLGGLYLSDNHLSGE--IPRWL--GNLSALEGIRMPNNNLEGP---IPIEFCQLSALKILDLSNNSIFGTLPS--CFS 333 (691)
Q Consensus 263 l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~ 333 (691)
+++|+.|++++|++.+. .+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..+. ...
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 55555555555554432 12222 4555666666666655521 112234455666666666665543321 112
Q ss_pred CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382 334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396 (691)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 396 (691)
+++|++|++++|.++.+ |..+. ++|+.|++++|++++. |. +..+++|++|++++|+++
T Consensus 252 l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCccChh-hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 34444444444444422 21111 3444444444444432 22 334444444444444443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=248.00 Aligned_cols=236 Identities=22% Similarity=0.208 Sum_probs=179.0
Q ss_pred CCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEc
Q 046382 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHL 342 (691)
Q Consensus 263 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l 342 (691)
+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ .++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3466667777776666666666677777777777777665443 6667777777777777665432 267778888
Q ss_pred cCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCC-CCCCCCEEEccCCCCCC
Q 046382 343 SKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-QLKEVRLIDLSHNNLSG 421 (691)
Q Consensus 343 ~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~ 421 (691)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88877766543 357788888888888877777788888888888888888887777765 68889999999888874
Q ss_pred CCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCee
Q 046382 422 HIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKL 501 (691)
Q Consensus 422 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 501 (691)
..+. ..+++|+.|+|++|.+
T Consensus 184 ~~~~------------------------------------------------------------~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 184 VKGQ------------------------------------------------------------VVFAKLKTLDLSSNKL 203 (487)
T ss_dssp EECC------------------------------------------------------------CCCTTCCEEECCSSCC
T ss_pred cccc------------------------------------------------------------ccCCCCCEEECCCCCC
Confidence 3111 0167889999999999
Q ss_pred eeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc-ccCCcccccCCCCCeEEcc
Q 046382 502 TGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLNTLEVFKVA 569 (691)
Q Consensus 502 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~ 569 (691)
++.. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 204 ~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 204 AFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8644 458889999999999999984 6777889999999999999998 6677778888888888886
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.6e-25 Score=218.22 Aligned_cols=208 Identities=21% Similarity=0.230 Sum_probs=140.0
Q ss_pred CcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEc
Q 046382 335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414 (691)
Q Consensus 335 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 414 (691)
+++++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45666666666666665556666677777777777766555556666777777777777776666666777777777777
Q ss_pred cCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceE
Q 046382 415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 494 (691)
Q Consensus 415 ~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 494 (691)
++|.+.+..+..+.. +++|++|
T Consensus 108 ~~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L 129 (276)
T 2z62_A 108 VETNLASLENFPIGH----------------------------------------------------------LKTLKEL 129 (276)
T ss_dssp TTSCCCCSTTCCCTT----------------------------------------------------------CTTCCEE
T ss_pred CCCCccccCchhccc----------------------------------------------------------CCCCCEE
Confidence 777665332221111 4667777
Q ss_pred EcCCCeeeec-cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC----EEeCCCccccccCCcccccCCCCCeEEcc
Q 046382 495 DLSCNKLTGE-IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE----SLDLSYNLLHGKIPPQLIVLNTLEVFKVA 569 (691)
Q Consensus 495 ~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 569 (691)
++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|+++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~ 208 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALD 208 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECC
Confidence 7777777653 467777777777777777777766666666666666 777788877755554443 3477788888
Q ss_pred CCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382 570 YNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 570 ~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
+|++++..+. ...+..++.+++++||+.|+|+
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 8877766554 3556677777888888888876
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=9.2e-25 Score=218.35 Aligned_cols=183 Identities=23% Similarity=0.199 Sum_probs=121.5
Q ss_pred CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCc
Q 046382 359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE 438 (691)
Q Consensus 359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~ 438 (691)
++++.|++++|.+++..+..+..+++|++|++++|++++..+. ..+++|++|++++|.++ .+|..+..
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~--------- 98 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT--------- 98 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT---------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhcc---------
Confidence 3455555555555544445555555566666666655543222 45666666666666664 33322111
Q ss_pred ccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeE
Q 046382 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHAL 518 (691)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 518 (691)
+++|++|++++|++++..+..|..+++|++|
T Consensus 99 -------------------------------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 99 -------------------------------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred -------------------------------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 4566777777777776666677777888888
Q ss_pred eCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCC
Q 046382 519 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 598 (691)
Q Consensus 519 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c 598 (691)
+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+.......++.+++.||||.|
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 88888887776777777888888888888887666666777888888888888887554445556677778888888888
Q ss_pred CCCC
Q 046382 599 GKPL 602 (691)
Q Consensus 599 ~~~l 602 (691)
+|.+
T Consensus 210 ~c~~ 213 (290)
T 1p9a_G 210 NCEI 213 (290)
T ss_dssp SGGG
T ss_pred cCcc
Confidence 8864
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.8e-24 Score=213.08 Aligned_cols=205 Identities=20% Similarity=0.217 Sum_probs=106.6
Q ss_pred CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392 (691)
Q Consensus 313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~ 392 (691)
..+.++++++.++..+... ++++++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3556666666665322211 24556666666655555555555555555555555555543333445555555555555
Q ss_pred CcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccE
Q 046382 393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETV 472 (691)
Q Consensus 393 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (691)
|++++..+..|..+++|++|++++|++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l----------------------------------------------------- 121 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQL----------------------------------------------------- 121 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCC-----------------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCcc-----------------------------------------------------
Confidence 555544444445555555555555554
Q ss_pred EEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc
Q 046382 473 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 552 (691)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 552 (691)
++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++.
T Consensus 122 -----------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 122 -----------------------------KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp -----------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -----------------------------CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 434444444555555555555555544444455555555555555555544
Q ss_pred CCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382 553 IPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 553 ~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
.+..|..+++|+.|++++|++++..+. ...+..++.+++++|||.|+|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 444455555555555555555543332 2334455555566666666664
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.3e-23 Score=206.57 Aligned_cols=203 Identities=22% Similarity=0.264 Sum_probs=153.1
Q ss_pred CCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEec
Q 046382 288 SALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDL 366 (691)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 366 (691)
...+.++++++.++. +|..+. +++++|++++|.+.+..+..+ .+++|++|++++|.++...+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357899999999984 555443 589999999999997776555 7899999999999999888888899999999999
Q ss_pred cCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCccc
Q 046382 367 SYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIW 446 (691)
Q Consensus 367 s~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~ 446 (691)
++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------- 149 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP----------------------- 149 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-----------------------
Confidence 999999777778899999999999999999887777888888888888888776322
Q ss_pred ccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCC
Q 046382 447 CGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLT 526 (691)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 526 (691)
+..|..+++|++|+|++|+++
T Consensus 150 -----------------------------------------------------------~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 150 -----------------------------------------------------------KGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp -----------------------------------------------------------TTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------------------------------------------------HhHccCCcccceeEecCCcCc
Confidence 223444555555555555555
Q ss_pred cccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382 527 GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575 (691)
Q Consensus 527 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 575 (691)
+..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 4444455556666666666666655444455556666666666666554
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-23 Score=208.70 Aligned_cols=222 Identities=20% Similarity=0.238 Sum_probs=149.2
Q ss_pred EEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccc
Q 046382 147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN 226 (691)
Q Consensus 147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 226 (691)
.+..+..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 344444454 5555432 36777777777777655556777777777777777776 555544566777777777777
Q ss_pred cCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCc-chhhhhcCCCCCEEecCCCccCCCcc
Q 046382 227 SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE-IPRWLGNLSALEGIRMPNNNLEGPIP 305 (691)
Q Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~ 305 (691)
.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. +|..+..+++|++|++++|.+++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 77766666677777777777777777766555677777777777777777653 46777777888888888887776655
Q ss_pred hhhcCCCCCC----EEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCC
Q 046382 306 IEFCQLSALK----ILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG 373 (691)
Q Consensus 306 ~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~ 373 (691)
..+..+++|+ +|++++|.+.+..+..+...+|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 5665555555 7777777777666666555566667776666666555555666666666666666553
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.5e-23 Score=204.47 Aligned_cols=204 Identities=22% Similarity=0.227 Sum_probs=165.9
Q ss_pred hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccE
Q 046382 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNY 387 (691)
Q Consensus 308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 387 (691)
+..++++++++++++.+....+.. +++++.|++++|.+++..+..+..+++|+.|++++|.+++..+ ...+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 456677788888887777544333 3678888888888888877888888999999999998885433 267889999
Q ss_pred EecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382 388 LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG 467 (691)
Q Consensus 388 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (691)
|++++|+++ .+|..+..+++|++|++++|++++..|..+..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 999999988 66777888899999999999987544443332
Q ss_pred CcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc
Q 046382 468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547 (691)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 547 (691)
+++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|
T Consensus 123 --------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 123 --------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp --------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 678999999999999777777889999999999999999777777889999999999999
Q ss_pred cccccCCcccccCCCCCeEEccCCcccc
Q 046382 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSG 575 (691)
Q Consensus 548 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 575 (691)
+++ .+|..+...++|+.+++++|++.+
T Consensus 183 ~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 183 SLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCC-ccChhhcccccCCeEEeCCCCccC
Confidence 998 677778888899999999999875
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.5e-23 Score=204.57 Aligned_cols=203 Identities=21% Similarity=0.246 Sum_probs=144.4
Q ss_pred cCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEE
Q 046382 309 CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL 388 (691)
Q Consensus 309 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 388 (691)
..+++|+.|++++|.+. ..+....+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34455555555555544 222333455556666666655543 256677777777887777776666667777888888
Q ss_pred ecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCC
Q 046382 389 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK 468 (691)
Q Consensus 389 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (691)
++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------- 155 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------------------------------- 155 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------------------------------
Confidence 88888887666666777888888888888776443332222
Q ss_pred cccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcc
Q 046382 469 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 548 (691)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 548 (691)
+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus 156 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 -------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 5678888888888886667777888888999999998888777778888899999999988
Q ss_pred ccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382 549 LHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 549 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 579 (691)
+.+. +++|+.+++++|.++|.+|.
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccC
Confidence 8744 44688888888888888776
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.1e-23 Score=218.44 Aligned_cols=259 Identities=18% Similarity=0.171 Sum_probs=136.7
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCCcch----hhhhcCC-CCCEEecCCCccCCCcchhhcCC-----CCC
Q 046382 245 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIP----RWLGNLS-ALEGIRMPNNNLEGPIPIEFCQL-----SAL 314 (691)
Q Consensus 245 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L 314 (691)
++++.|.+.+.+|..+...++|+.|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555444444445555555555554444 4444555 55555555555554444444332 455
Q ss_pred CEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCC-CCccEEeccCCCCCCCcchhh----cC-CCCccEE
Q 046382 315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDS-PYLVTLDLSYNRLHGSIPNRI----DR-LPQLNYL 388 (691)
Q Consensus 315 ~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~----~~-l~~L~~L 388 (691)
++|++++|.+.+..+..+ ...+..+ ++|+.|++++|.+++..+..+ .. .++|++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l-------------------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDEL-------------------VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp CEEECCSSCGGGSCHHHH-------------------HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred cEEECcCCcCChHHHHHH-------------------HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 555555554443222110 0112223 556666666666654444332 22 2466666
Q ss_pred ecccCcCcccCC----cCCCCCC-CCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCC
Q 046382 389 LLAHNYIKGEIP----VQLCQLK-EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSA 463 (691)
Q Consensus 389 ~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (691)
++++|++++... ..+..++ +|++|++++|++++..+..+...-
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-------------------------------- 191 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL-------------------------------- 191 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------
Confidence 666666653222 2223333 677777777766654444333210
Q ss_pred CCCCCcccEEEEecCccceeccccc-cccceEEcCCCeeeec----cchhhhc-ccCCCeEeCCCCcCCcccc----hhh
Q 046382 464 PPMGKEETVQFTTKNMSYYYQGRIL-TSMSGIDLSCNKLTGE----IPTQIGY-LSGIHALNLSHNNLTGTIP----TTF 533 (691)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~ 533 (691)
... ++|++|||++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+
T Consensus 192 ----------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 192 ----------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp ----------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred ----------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 002 3667777777776642 3444444 3477777777777765433 334
Q ss_pred cCCCcCCEEeCCCcccccc-------CCcccccCCCCCeEEccCCccccc
Q 046382 534 SNLKQIESLDLSYNLLHGK-------IPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 534 ~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
..+++|+.|+|++|.+.+. ++..+..+++|+.|++++|++...
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5667777777777774322 223455667777777777777654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.4e-22 Score=199.35 Aligned_cols=179 Identities=22% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCc
Q 046382 91 HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLM 170 (691)
Q Consensus 91 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~ 170 (691)
.+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.++ .++...+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCC
Confidence 3444555555555543 2332 24455555555555554332 23444455555555555444 33333333344455
Q ss_pred EEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCC
Q 046382 171 DLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGN 250 (691)
Q Consensus 171 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 250 (691)
+|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 5555555444444444444444444444444444 333333334444444444444444333333344444444444444
Q ss_pred cCcccCCccccCCCCCCEEEccCCcC
Q 046382 251 KFIGEIPESLSKCYLLGGLYLSDNHL 276 (691)
Q Consensus 251 ~l~~~~~~~~~~l~~L~~L~l~~n~~ 276 (691)
++.+..+..+..+++|+.|++++|++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 44433333334444444444444433
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=205.39 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCCEEecCCCccCCCcch---hhcCCCCCCEEEccCCcCcccCCCC---CCCCcccEEEccCCccccccc----cccCCC
Q 046382 289 ALEGIRMPNNNLEGPIPI---EFCQLSALKILDLSNNSIFGTLPSC---FSPAHIEQVHLSKNKIEGRLE----SIIHDS 358 (691)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~---~~~~~L~~L~l~~n~i~~~~~----~~~~~~ 358 (691)
.++.+.+.++.+...... .+..+++|++|++++|.+.+..+.. ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455666666554321110 1112344666666666655544443 234555555555555543222 122334
Q ss_pred CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc---C-CcCCCCCCCCCEEEccCCCC
Q 046382 359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE---I-PVQLCQLKEVRLIDLSHNNL 419 (691)
Q Consensus 359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~---~-~~~~~~l~~L~~L~l~~n~l 419 (691)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 4455555555554444444444444555555555544321 1 11223444444444444444
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.2e-21 Score=191.86 Aligned_cols=184 Identities=20% Similarity=0.204 Sum_probs=152.2
Q ss_pred CcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEc
Q 046382 335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414 (691)
Q Consensus 335 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 414 (691)
...++++++++.++.++.. + .++++.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567899999888865443 2 268899999999999887778889999999999999999888888889999999999
Q ss_pred cCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceE
Q 046382 415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 494 (691)
Q Consensus 415 ~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 494 (691)
++|++++..+..+.. +++|++|
T Consensus 91 ~~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L 112 (251)
T 3m19_A 91 ANNQLASLPLGVFDH----------------------------------------------------------LTQLDKL 112 (251)
T ss_dssp TTSCCCCCCTTTTTT----------------------------------------------------------CTTCCEE
T ss_pred CCCcccccChhHhcc----------------------------------------------------------cCCCCEE
Confidence 999987544443322 6788999
Q ss_pred EcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc
Q 046382 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574 (691)
Q Consensus 495 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 574 (691)
+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 99999998777777888999999999999998777778889999999999999999887778888999999999999988
Q ss_pred ccCCC
Q 046382 575 GKIPD 579 (691)
Q Consensus 575 ~~~p~ 579 (691)
+....
T Consensus 193 c~~~~ 197 (251)
T 3m19_A 193 CSRCE 197 (251)
T ss_dssp TTSTT
T ss_pred CCccc
Confidence 75443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.6e-22 Score=200.85 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=44.6
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 223 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence 3455555555555553222 5555566666666666553332 5555666666666666554332 55555666666
Q ss_pred ccCCcccc
Q 046382 568 VAYNNLSG 575 (691)
Q Consensus 568 l~~N~l~~ 575 (691)
+++|++++
T Consensus 224 l~~N~i~~ 231 (308)
T 1h6u_A 224 LTNQTITN 231 (308)
T ss_dssp EEEEEEEC
T ss_pred ccCCeeec
Confidence 66665554
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.2e-21 Score=190.00 Aligned_cols=180 Identities=22% Similarity=0.255 Sum_probs=126.0
Q ss_pred CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392 (691)
Q Consensus 313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~ 392 (691)
..++++++++.+...+... +++++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4567777777776433332 35777777777777777776777777777777777777766666677777777777777
Q ss_pred CcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccE
Q 046382 393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETV 472 (691)
Q Consensus 393 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (691)
|++++..+..|..+++|++|++++|.+++..+..+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------- 129 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------- 129 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence 7777666666777777777777777776433322221
Q ss_pred EEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc
Q 046382 473 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 552 (691)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 552 (691)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++..
T Consensus 130 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 130 ---------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 56777777777777765565677777777777777777766666777777777777777777654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5.4e-22 Score=192.89 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=113.1
Q ss_pred CcccEEEccCCccccccccccCCCCCccEEeccCCC-CCCCcchhhcCCCCccEEeccc-CcCcccCCcCCCCCCCCCEE
Q 046382 335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNR-LHGSIPNRIDRLPQLNYLLLAH-NYIKGEIPVQLCQLKEVRLI 412 (691)
Q Consensus 335 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L 412 (691)
+++++|++++|+++++.+..+..+++|+.|++++|. ++...+..+..+++|++|++++ |++++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 355566666666655555556666666666666664 5544444556666666666665 66665555556666666666
Q ss_pred EccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccc
Q 046382 413 DLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS 492 (691)
Q Consensus 413 ~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 492 (691)
++++|++++ +|. +.. +++|+
T Consensus 111 ~l~~n~l~~-lp~-~~~----------------------------------------------------------l~~L~ 130 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTK----------------------------------------------------------VYSTD 130 (239)
T ss_dssp EEEEECCCS-CCC-CTT----------------------------------------------------------CCBCC
T ss_pred eCCCCCCcc-ccc-ccc----------------------------------------------------------ccccc
Confidence 666666653 332 111 22333
Q ss_pred ---eEEcCCC-eeeeccchhhhcccCCC-eEeCCCCcCCcccchhhcCCCcCCEEeCCCcc-ccccCCcccccC-CCCCe
Q 046382 493 ---GIDLSCN-KLTGEIPTQIGYLSGIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-LHGKIPPQLIVL-NTLEV 565 (691)
Q Consensus 493 ---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~ 565 (691)
+|++++| .+++..+..|..+++|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 6666666 66655555566666666 6666666666333333433 666666666663 665555566666 66666
Q ss_pred EEccCCcccccCCCCCCCCCcCcCcccCC
Q 046382 566 FKVAYNNLSGKIPDRAQFSTFEEDSYEGN 594 (691)
Q Consensus 566 L~l~~N~l~~~~p~~~~~~~~~~~~~~~N 594 (691)
|++++|++++..+. .+..++.+.+.++
T Consensus 210 L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 210 LDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EECCCCccccCChh--HhccCceeeccCc
Confidence 66666666643332 4555555555543
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.1e-23 Score=220.61 Aligned_cols=251 Identities=18% Similarity=0.224 Sum_probs=146.7
Q ss_pred CCccccCCCCCCEEEccCCcCCCcchhh----hhcCCCCCEEecCCCccC---CCcchhh-------cCCCCCCEEEccC
Q 046382 256 IPESLSKCYLLGGLYLSDNHLSGEIPRW----LGNLSALEGIRMPNNNLE---GPIPIEF-------CQLSALKILDLSN 321 (691)
Q Consensus 256 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~~---~~~~~~~-------~~l~~L~~L~L~~ 321 (691)
++..+..+++|+.|++++|.+++..+.. +..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3445556666777777777666543332 445666666666665332 2233332 3445555555555
Q ss_pred CcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhc----CC---------CCccEE
Q 046382 322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRID----RL---------PQLNYL 388 (691)
Q Consensus 322 n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~----~l---------~~L~~L 388 (691)
|.+.+.... ..+..+..+++|+.|++++|.+++..+..+. .+ ++|++|
T Consensus 104 n~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 104 NAFGPTAQE-------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCCTTTHH-------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred CcCCHHHHH-------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 554421000 2334455566666666666666533222222 22 667777
Q ss_pred ecccCcCc-ccCC---cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCC
Q 046382 389 LLAHNYIK-GEIP---VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAP 464 (691)
Q Consensus 389 ~L~~n~i~-~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (691)
++++|+++ +..+ ..+..+++|++|++++|.++......+....
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~--------------------------------- 211 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG--------------------------------- 211 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT---------------------------------
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH---------------------------------
Confidence 77777765 2222 2445566777777777766521000000000
Q ss_pred CCCCcccEEEEecCccceeccccccccceEEcCCCeee----eccchhhhcccCCCeEeCCCCcCCcc----cchhhc--
Q 046382 465 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT----GEIPTQIGYLSGIHALNLSHNNLTGT----IPTTFS-- 534 (691)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-- 534 (691)
...+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++. ++..+.
T Consensus 212 --------------------l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 212 --------------------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp --------------------GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred --------------------hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 011567777777777775 45677778888888888888888755 456663
Q ss_pred CCCcCCEEeCCCccccc----cCCccc-ccCCCCCeEEccCCcccccCC
Q 046382 535 NLKQIESLDLSYNLLHG----KIPPQL-IVLNTLEVFKVAYNNLSGKIP 578 (691)
Q Consensus 535 ~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p 578 (691)
.+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 37888888888888886 466666 557888888888888876553
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.5e-22 Score=208.09 Aligned_cols=252 Identities=16% Similarity=0.189 Sum_probs=147.5
Q ss_pred CCEEEccCCCCcccCchHHhhcC--CCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCccc-CchhhhhCCCCCcE
Q 046382 95 LKNADLSHLNLSGQFPNWLLENN--TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH-IPVEIGTYLPGLMD 171 (691)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~l~~L~~ 171 (691)
++.++++++.+. +. .+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++.. ...+++|++
T Consensus 49 ~~~l~l~~~~~~---~~-~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH---PD-VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC---HH-HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSE
T ss_pred heeeccccccCC---HH-HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCE
Confidence 566666666554 12 23444 6666677766666554443 44566677777777666543 3333 333667777
Q ss_pred EEccCCcccccCchhhhCCCCCCEEecccc-ccccccchhHhhcCCCCCEEEcccc-cCCcc-CcccccCCC-CCCEEEc
Q 046382 172 LNLSRNAFNGSIPSSFADMKMLERLDISDN-QLTGEIPERMATGCFSLKILALSNN-SLQGH-IFSKKFNLT-NLMRLQL 247 (691)
Q Consensus 172 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~L 247 (691)
|++++|.+++..+..++.+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777666566666666777777777776 4553222233355667777777776 66543 234455566 7777777
Q ss_pred cCC--cCc-ccCCccccCCCCCCEEEccCCc-CCCcchhhhhcCCCCCEEecCCCc-cCCCcchhhcCCCCCCEEEccCC
Q 046382 248 DGN--KFI-GEIPESLSKCYLLGGLYLSDNH-LSGEIPRWLGNLSALEGIRMPNNN-LEGPIPIEFCQLSALKILDLSNN 322 (691)
Q Consensus 248 ~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n 322 (691)
++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 776 333 2334455666777777777776 555556666777777777777774 22222224666777777777776
Q ss_pred cCcccCCCCC-CC-CcccEEEccCCccccccccccC
Q 046382 323 SIFGTLPSCF-SP-AHIEQVHLSKNKIEGRLESIIH 356 (691)
Q Consensus 323 ~i~~~~~~~~-~~-~~L~~L~l~~n~i~~~~~~~~~ 356 (691)
+.. ..+ .. ..++.|++++|.+++..+..+.
T Consensus 283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred -cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 221 111 11 2355666777777766665544
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.7e-22 Score=206.79 Aligned_cols=269 Identities=19% Similarity=0.133 Sum_probs=119.5
Q ss_pred EEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCch---HHhhcCC-CCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382 74 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPN---WLLENNT-NLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149 (691)
Q Consensus 74 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 149 (691)
++++.+.+++.+|..+...++|++|++++|.+++..+. ..+..++ +|++|++++|++.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 34455555555555444444455555555555422220 1224444 45555555555444333333322
Q ss_pred cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchh----hhCC-CCCCEEeccccccccccchhHh---hc-CCCCCE
Q 046382 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS----FADM-KMLERLDISDNQLTGEIPERMA---TG-CFSLKI 220 (691)
Q Consensus 150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~---~~-l~~L~~ 220 (691)
+....++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. .. .++|++
T Consensus 75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 0000134444444444444333332 2222 4455555555544422222211 11 134444
Q ss_pred EEcccccCCccCcc----cccCCC-CCCEEEccCCcCcccCCc----cccCC-CCCCEEEccCCcCCCc----chhhhhc
Q 046382 221 LALSNNSLQGHIFS----KKFNLT-NLMRLQLDGNKFIGEIPE----SLSKC-YLLGGLYLSDNHLSGE----IPRWLGN 286 (691)
Q Consensus 221 L~l~~n~l~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~ 286 (691)
|++++|.+++.... .+...+ +|++|++++|++++..+. .+..+ ++|+.|++++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 44444444432211 122232 555555555555443332 22233 3555566665555432 2333333
Q ss_pred -CCCCCEEecCCCccCCCcchh----hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCc
Q 046382 287 -LSALEGIRMPNNNLEGPIPIE----FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361 (691)
Q Consensus 287 -l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 361 (691)
.++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. + ...+..+..+++|
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~---------------~-~~l~~~~~~l~~L 286 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ---------------C-KALGAAFPNIQKI 286 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH---------------H-HHHHTTSTTCCEE
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH---------------H-HHHHHHhccCCce
Confidence 236666666666665443322 234455555555555432211100 0 1123356677788
Q ss_pred cEEeccCCCCCCCcchh
Q 046382 362 VTLDLSYNRLHGSIPNR 378 (691)
Q Consensus 362 ~~L~ls~n~i~~~~~~~ 378 (691)
+.||+++|.+.+..+..
T Consensus 287 ~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 287 ILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp EEECTTSCBCCGGGCHH
T ss_pred EEEecCCCcCCCcchHH
Confidence 88888888887654433
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.9e-22 Score=209.82 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=109.0
Q ss_pred chhhcCCCCCCEEEccCCCCcccCchHH---hhcCCCCCEEEccCCcc---cccCCcCc-------cCCCccCEEEccCC
Q 046382 86 PKFLYHQHDLKNADLSHLNLSGQFPNWL---LENNTNLVMLLLANNSL---FGSFRMPI-------HSHQNLATLDVSNN 152 (691)
Q Consensus 86 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~---~~~~~~~l-------~~l~~L~~L~Ls~n 152 (691)
+..+..+++|++|+|++|.+.+..+..+ +..+++|++|+|++|.+ .+..|..+ ..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3444455556666666555543322221 23455555555555432 22222222 44555555555555
Q ss_pred cCcc----cCchhhhhCCCCCcEEEccCCcccccCchhhh----CC---------CCCCEEecccccccc-ccch--hHh
Q 046382 153 FFHG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA----DM---------KMLERLDISDNQLTG-EIPE--RMA 212 (691)
Q Consensus 153 ~i~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~l~~-~~~~--~~~ 212 (691)
.+++ .++..+.. +++|++|++++|.++...+..+. .+ ++|++|++++|++++ .++. ..+
T Consensus 105 ~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 5553 13333332 45555555555555432222222 22 555555555555541 2221 122
Q ss_pred hcCCCCCEEEcccccCCc-----cCcccccCCCCCCEEEccCCcCc----ccCCccccCCCCCCEEEccCCcCCCc----
Q 046382 213 TGCFSLKILALSNNSLQG-----HIFSKKFNLTNLMRLQLDGNKFI----GEIPESLSKCYLLGGLYLSDNHLSGE---- 279 (691)
Q Consensus 213 ~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~---- 279 (691)
..+++|++|++++|+++. ..+..+..+++|+.|++++|.++ ..++..+..+++|+.|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 345555555555555542 11123444555555555555553 23344445555555555555555433
Q ss_pred chhhhhc--CCCCCEEecCCCccCC----Ccchhh-cCCCCCCEEEccCCcCc
Q 046382 280 IPRWLGN--LSALEGIRMPNNNLEG----PIPIEF-CQLSALKILDLSNNSIF 325 (691)
Q Consensus 280 ~~~~l~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~L~~n~i~ 325 (691)
++..+.. +++|++|++++|.+++ .++..+ ..+++|++|++++|.+.
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 2333322 4555555555555543 133333 33455555555555444
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.6e-22 Score=203.18 Aligned_cols=254 Identities=15% Similarity=0.120 Sum_probs=160.3
Q ss_pred cccEEEecCCCCCCCcchhhcCC--CCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc-CCcCccCCCccCE
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQ--HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS-FRMPIHSHQNLAT 146 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~ 146 (691)
.+++++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4667777777655 3444444 6677777777777655444 24677777777777776544 5555667777777
Q ss_pred EEccCCcCcccCchhhhhCCCCCcEEEccCC-cccc-cCchhhhCCCCCCEEecccc-ccccccchhHhhcCC-CCCEEE
Q 046382 147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN-AFNG-SIPSSFADMKMLERLDISDN-QLTGEIPERMATGCF-SLKILA 222 (691)
Q Consensus 147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~ 222 (691)
|++++|.+++..+..+.. +++|++|++++| .+++ .++..+..+++|++|++++| .+++......+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 777777777555555554 677777777777 4554 24555677777777777777 666432223345677 777777
Q ss_pred cccc--cCC-ccCcccccCCCCCCEEEccCCc-CcccCCccccCCCCCCEEEccCCc-CCCcchhhhhcCCCCCEEecCC
Q 046382 223 LSNN--SLQ-GHIFSKKFNLTNLMRLQLDGNK-FIGEIPESLSKCYLLGGLYLSDNH-LSGEIPRWLGNLSALEGIRMPN 297 (691)
Q Consensus 223 l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 297 (691)
+++| .++ +..+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 7777 344 2334445567777777777777 555556667777777777777774 3222223566677777777777
Q ss_pred CccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC
Q 046382 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF 332 (691)
Q Consensus 298 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 332 (691)
| +.......+. ..++.|++++|.+++..+..+
T Consensus 282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 282 I-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp S-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred c-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 7 4432222222 124455567777776666554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=193.93 Aligned_cols=202 Identities=18% Similarity=0.184 Sum_probs=128.4
Q ss_pred CccCEEEccCCcCccc----CchhhhhCCCCCcEEEccCCcccccCchhh--hCCCCCCEEeccccccccccc---hhHh
Q 046382 142 QNLATLDVSNNFFHGH----IPVEIGTYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERLDISDNQLTGEIP---ERMA 212 (691)
Q Consensus 142 ~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~ 212 (691)
..++.+.+.++.++.. +..... +++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLA--YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHH--HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcc--cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3466777777665421 111111 3578899999888888888777 888889999999988875433 2222
Q ss_pred hcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCccc--C--CccccCCCCCCEEEccCCcCCCcchh----hh
Q 046382 213 TGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE--I--PESLSKCYLLGGLYLSDNHLSGEIPR----WL 284 (691)
Q Consensus 213 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~l 284 (691)
..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++. ++. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHH
Confidence 4678888888888888877777777888888888888876542 1 2233566777777777777753 222 24
Q ss_pred hcCCCCCEEecCCCccCCCcchhhcCC---CCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccc
Q 046382 285 GNLSALEGIRMPNNNLEGPIPIEFCQL---SALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIE 348 (691)
Q Consensus 285 ~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~ 348 (691)
..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+... |..+ +++|++|++++|+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~-~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL-PAKLRVLDLSSNRLN 285 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC-CSCCSCEECCSCCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh-cCCCCEEECCCCcCC
Confidence 566777777777777766555555444 4566666666655522 2221 134444444444444
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6e-21 Score=185.48 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred CCCEEEccCCcccccCCcCccCCCccCEEEccCCc-CcccCchhhhhCCCCCcEEEccC-CcccccCchhhhCCCCCCEE
Q 046382 119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF-FHGHIPVEIGTYLPGLMDLNLSR-NAFNGSIPSSFADMKMLERL 196 (691)
Q Consensus 119 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L 196 (691)
+|++|++++|++.+..+..+..+++|++|++++|+ ++ .++...+..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 44444444444444444444444445555555443 43 33333333344555555544 44444444444455555555
Q ss_pred eccccccccccchhHhhcCCCCC---EEEcccc-cCCccCcccccCCCCCC-EEEccCCcCcccCCccccCCCCCCEEEc
Q 046382 197 DISDNQLTGEIPERMATGCFSLK---ILALSNN-SLQGHIFSKKFNLTNLM-RLQLDGNKFIGEIPESLSKCYLLGGLYL 271 (691)
Q Consensus 197 ~L~~n~l~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l 271 (691)
++++|.++ .+|. +..+++|+ .|++++| .+++..+..+..+++|+ .|++++|+++...+..+.. ++|+.|++
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 55555544 3443 23344444 4444444 44444333444444555 5555554444222222222 44444555
Q ss_pred cCCc-CCCcchhhhhcC-CCCCEEecCCCccC
Q 046382 272 SDNH-LSGEIPRWLGNL-SALEGIRMPNNNLE 301 (691)
Q Consensus 272 ~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~ 301 (691)
++|+ +++..+..+..+ ++|+.|++++|.++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 4442 443333344444 44455555544444
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.6e-20 Score=187.94 Aligned_cols=192 Identities=23% Similarity=0.311 Sum_probs=101.6
Q ss_pred cCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCE
Q 046382 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 195 (691)
Q Consensus 116 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 195 (691)
.+++|++|++++|.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. ..+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 445555555555555332 2 3455555555555555555 3333 22355555555555555532 24555556666
Q ss_pred EeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCc
Q 046382 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 275 (691)
Q Consensus 196 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 275 (691)
|++++|.++ .++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 112 L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 666666555 3332 3445555555555555554322 4455556666666655553222 5555566666666666
Q ss_pred CCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382 276 LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325 (691)
Q Consensus 276 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 325 (691)
+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++.
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 554322 555666666666666665433 2555666666666666554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.5e-19 Score=186.24 Aligned_cols=242 Identities=21% Similarity=0.179 Sum_probs=170.0
Q ss_pred CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCE-EEc
Q 046382 145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKI-LAL 223 (691)
Q Consensus 145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l 223 (691)
++++.++++++ .+|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 57888888888 8887663 578889999998886666678888888888888888865677777777777665 455
Q ss_pred ccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCC
Q 046382 224 SNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303 (691)
Q Consensus 224 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 303 (691)
+.|+++...+..+..+++|++|++++|++....+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 567777666666777777777777777766444433333334444444332 233322
Q ss_pred cchhhcCC-CCCCEEEccCCcCcccCCCCCCCCcccEEEccC-CccccccccccCCCCCccEEeccCCCCCCCcchhhcC
Q 046382 304 IPIEFCQL-SALKILDLSNNSIFGTLPSCFSPAHIEQVHLSK-NKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR 381 (691)
Q Consensus 304 ~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~ 381 (691)
.+..|..+ ..++.|++++|.+....+..+...+++++++.+ |.++.+.+..|..+++|+.|++++|+++...+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 23334444 357788888888887777777778899999874 6777777778899999999999999998544433
Q ss_pred CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCC
Q 046382 382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417 (691)
Q Consensus 382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 417 (691)
+.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4455666655554333555 4788999999998754
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.7e-19 Score=185.78 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=128.1
Q ss_pred CEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcE-EEc
Q 046382 96 KNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMD-LNL 174 (691)
Q Consensus 96 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~-L~L 174 (691)
++++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+|...+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777776 677654 3678888888888877766778888888888888888765677777666777665 555
Q ss_pred cCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccc-ccCCccCcccccCCC-CCCEEEccCCcC
Q 046382 175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN-NSLQGHIFSKKFNLT-NLMRLQLDGNKF 252 (691)
Q Consensus 175 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l 252 (691)
++|+++...|..|..+++|++|++++|+++ .++...+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 667888777777888888888888888887 55554444455666666654 455544444444443 455666666666
Q ss_pred cccCCccccCCCCCCEEEccC-CcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382 253 IGEIPESLSKCYLLGGLYLSD-NHLSGEIPRWLGNLSALEGIRMPNNNLE 301 (691)
Q Consensus 253 ~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 301 (691)
+...+..+ ...+|+.+++.+ |.++...++.|..+++|++|++++|+++
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 53333322 334555555543 3444333334455555555555555555
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=8.2e-20 Score=174.45 Aligned_cols=114 Identities=22% Similarity=0.278 Sum_probs=56.0
Q ss_pred ccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382 490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 569 (691)
Q Consensus 490 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 569 (691)
+|++|+|++|.+++..|..|..+++|++|+|++|+|+...+..|.++++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 33333333444333344444445555555555555554434444455555555555555554444455555555555555
Q ss_pred CCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382 570 YNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS 603 (691)
Q Consensus 570 ~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~ 603 (691)
+|++++..+. ...+..++.+++++|||.|+|.+.
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 5555544443 233444555555666666666543
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=4.3e-20 Score=191.03 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=67.4
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccc---ccCCCCC
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL---IVLNTLE 564 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~ 564 (691)
+++|++|+|++|++++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|++++..+..+ ..+++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 4455666666666655555556666666666666666665556666666666666666666664433333 4466666
Q ss_pred eEEccCCcccccCCC-CCCCCC--cCcCcccCCCCCCCCCC
Q 046382 565 VFKVAYNNLSGKIPD-RAQFST--FEEDSYEGNPFLCGKPL 602 (691)
Q Consensus 565 ~L~l~~N~l~~~~p~-~~~~~~--~~~~~~~~Np~~c~~~l 602 (691)
.|++++|+|++..+. ...+.. ++.+++++|||.|+|.+
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 666666666643322 111222 25567778888888754
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=169.46 Aligned_cols=153 Identities=22% Similarity=0.242 Sum_probs=86.2
Q ss_pred cEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV 440 (691)
Q Consensus 362 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~ 440 (691)
+.+++++|.++ .+|..+ .+.+++|++++|++++..+ ..|..+++|+.|++++|.+++..+..+..
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46677777666 344433 2345666666666665533 33556666666666666665333322221
Q ss_pred CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382 441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL 520 (691)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 520 (691)
+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 80 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 80 -----------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 445556666666665555555555666666666
Q ss_pred CCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382 521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575 (691)
Q Consensus 521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 575 (691)
++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 6666655555555556666666666666655555555555555555555555543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.1e-19 Score=168.45 Aligned_cols=161 Identities=25% Similarity=0.214 Sum_probs=76.7
Q ss_pred CCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEe
Q 046382 118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLD 197 (691)
Q Consensus 118 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 197 (691)
++|++|++++|++.+..+..+..+++|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34555555555554444444445555555555555554 34443333345555555555555544344445555555555
Q ss_pred ccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCC
Q 046382 198 ISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 277 (691)
Q Consensus 198 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 277 (691)
+++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .++.|+.|+++.|.++
T Consensus 107 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred cCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 5555554 3443333444555555555555544433334445555555555554321 2334444555555555
Q ss_pred CcchhhhhcC
Q 046382 278 GEIPRWLGNL 287 (691)
Q Consensus 278 ~~~~~~l~~l 287 (691)
+.+|.+++.+
T Consensus 179 g~ip~~~~~l 188 (208)
T 2o6s_A 179 GVVRNSAGSV 188 (208)
T ss_dssp TTBBCTTSSB
T ss_pred ceeeccCccc
Confidence 4444444433
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.5e-19 Score=167.58 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=105.0
Q ss_pred CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCc
Q 046382 359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE 438 (691)
Q Consensus 359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~ 438 (691)
++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------- 98 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------- 98 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------
Confidence 35666666666666544445566666666666666666555555666666667777666665332222211
Q ss_pred ccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeE
Q 046382 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHAL 518 (691)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 518 (691)
+++|++|++++|.+++..+..+..+++|++|
T Consensus 99 -------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 99 -------------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred -------------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 4567777777777775556667778888888
Q ss_pred eCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382 519 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 519 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 579 (691)
++++|++++..+..|..+++|+.|++++|.+.+ .+++|+.|++++|+++|.+|.
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence 888888886666667888888888888887764 345678888888888888775
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=7.3e-19 Score=190.19 Aligned_cols=114 Identities=20% Similarity=0.398 Sum_probs=57.5
Q ss_pred CCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccC
Q 046382 289 ALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY 368 (691)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~ 368 (691)
+++.|++++|.+++ +|..+ .++|++|++++|.+.. +| ..+++|+.|++++|.++++ |. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP--ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCC
Confidence 56666666666654 33323 2456666666665552 22 2245555555555555542 22 322 555555555
Q ss_pred CCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382 369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420 (691)
Q Consensus 369 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 420 (691)
|.+++ +|. .+++|++|++++|++++ +|. .+++|+.|++++|+++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 55553 333 34555555555555553 232 3445555555555554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.1e-18 Score=166.60 Aligned_cols=153 Identities=24% Similarity=0.275 Sum_probs=109.0
Q ss_pred cEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccC
Q 046382 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVA 441 (691)
Q Consensus 362 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~ 441 (691)
+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|+.|++++|.+++..|..+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 45666666665 3444332 46777777777776666666777777777777777776544444332
Q ss_pred CCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCC
Q 046382 442 PTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLS 521 (691)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 521 (691)
+++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 79 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 79 ----------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp ----------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ----------------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 4667777777777775555567778888888888
Q ss_pred CCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382 522 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575 (691)
Q Consensus 522 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 575 (691)
+|+|++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 888887777888888888888888888887777778888888888888888865
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=165.97 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=87.0
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 56777777777777766666777777777778877777777777777777777888877777777777777777777788
Q ss_pred ccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382 568 VAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS 603 (691)
Q Consensus 568 l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~ 603 (691)
+++|++++..|. ...+..++.+++++|||.|+|++.
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 877777777664 445667777777777777777653
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.4e-18 Score=165.48 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=107.4
Q ss_pred ccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382 361 LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV 440 (691)
Q Consensus 361 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~ 440 (691)
.+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 466888888777 455443 367888888888888777777888888888888888775322222221
Q ss_pred CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382 441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL 520 (691)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 520 (691)
+++|+.|+|++|++++..+..|..+++|++|+|
T Consensus 87 -----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 87 -----------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 566777777777777655666677777777777
Q ss_pred CCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382 521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK 576 (691)
Q Consensus 521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 576 (691)
++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 777777 5566677777777777777777766666677777777777777666643
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.3e-18 Score=188.18 Aligned_cols=134 Identities=23% Similarity=0.331 Sum_probs=69.9
Q ss_pred CCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccC
Q 046382 265 LLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSK 344 (691)
Q Consensus 265 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~ 344 (691)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.+.+ ++. +. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 55566666665554 33322 245666666666555 233 234556666666665554 233 21 2566666666
Q ss_pred CccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382 345 NKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420 (691)
Q Consensus 345 n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 420 (691)
|.++++.. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|.++
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 65555322 35556666666666553 333 34556666666666554 333 33 55555666555554
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=179.43 Aligned_cols=176 Identities=22% Similarity=0.203 Sum_probs=106.7
Q ss_pred CEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccC-CCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC
Q 046382 315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH-DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393 (691)
Q Consensus 315 ~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n 393 (691)
+.++++++.+...+... ++.++.|++++|.+++..+..+. .+++|+.|++++|++++..+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56777777766433222 34567777777777766666665 6677777777777776555556666777777777777
Q ss_pred cCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEE
Q 046382 394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQ 473 (691)
Q Consensus 394 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (691)
++++..+..|..+++|+.|++++|++++..|..+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-------------------------------------------- 134 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-------------------------------------------- 134 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------------------------------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC--------------------------------------------
Confidence 776665556666667777777766665433333222
Q ss_pred EEecCccceeccccccccceEEcCCCeeeeccchhh---hcccCCCeEeCCCCcCCcccchhhcCCCc--CCEEeCCCcc
Q 046382 474 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI---GYLSGIHALNLSHNNLTGTIPTTFSNLKQ--IESLDLSYNL 548 (691)
Q Consensus 474 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~ 548 (691)
+++|+.|+|++|.+++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|+
T Consensus 135 --------------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 135 --------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp --------------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred --------------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 4566666666666664333333 44666666666666666555555555555 3566666666
Q ss_pred cc
Q 046382 549 LH 550 (691)
Q Consensus 549 l~ 550 (691)
+.
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.9e-18 Score=169.67 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=50.5
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
+++|+.|++++|.+++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|+
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE 206 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEE
Confidence 45566666666666533 355666666666666666664443 66666666666666666643 2 366666677777
Q ss_pred ccCCcccc
Q 046382 568 VAYNNLSG 575 (691)
Q Consensus 568 l~~N~l~~ 575 (691)
+++|+++.
T Consensus 207 l~~n~i~~ 214 (291)
T 1h6t_A 207 LFSQECLN 214 (291)
T ss_dssp EEEEEEEC
T ss_pred CcCCcccC
Confidence 77666654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=7.5e-18 Score=161.97 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=38.7
Q ss_pred ccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccC
Q 046382 337 IEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 416 (691)
Q Consensus 337 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 416 (691)
.+.++.+++.++.++... .++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344455544444332211 14455555555555544444455555555555555555443334445555555555555
Q ss_pred CCCC
Q 046382 417 NNLS 420 (691)
Q Consensus 417 n~l~ 420 (691)
|+++
T Consensus 98 N~l~ 101 (229)
T 3e6j_A 98 NQLT 101 (229)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5554
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.4e-17 Score=166.41 Aligned_cols=171 Identities=25% Similarity=0.331 Sum_probs=80.0
Q ss_pred hcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCC
Q 046382 115 ENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 194 (691)
Q Consensus 115 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 194 (691)
..+++|++|++++|.+.+. ..+..+++|++|++++|+++ .++. ...+++|++|++++|.+++ + ..+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 3455566666666655433 12455555555555555555 2332 2224555555555555542 1 2244444555
Q ss_pred EEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 046382 195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274 (691)
Q Consensus 195 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 274 (691)
+|++++|+++ .+ ..+..+++|+.|++++|++.+. ..+..+++|+.|++++|
T Consensus 116 ~L~L~~n~i~-~~--------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 116 SLSLEHNGIS-DI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECTTSCCC-CC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred EEECCCCcCC-CC--------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence 5555554444 22 2233344444444444444322 23444444555555555
Q ss_pred cCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382 275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325 (691)
Q Consensus 275 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 325 (691)
.+++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 5443322 44455555555555555432 2 2445555555555555544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=9.1e-18 Score=183.81 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=26.8
Q ss_pred cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (691)
++|+.|+|++|.+++..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+++
T Consensus 153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 344444444444443333 44444555555555554432 22444455555555555444
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=156.34 Aligned_cols=154 Identities=17% Similarity=0.248 Sum_probs=104.7
Q ss_pred CCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCC
Q 046382 356 HDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGG 435 (691)
Q Consensus 356 ~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~ 435 (691)
..+++|+.|++++|.++ .++ .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..|..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 34556667777777666 334 46666777777777775542 235666777777777777776433432221
Q ss_pred CCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCC
Q 046382 436 HHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGI 515 (691)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 515 (691)
+++|++|++++|.+++..|..+..+++|
T Consensus 111 ----------------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 111 ----------------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred ----------------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 5677777777777776677778888888
Q ss_pred CeEeCCCCc-CCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382 516 HALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575 (691)
Q Consensus 516 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 575 (691)
++|++++|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus 139 ~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 888888887 55 444 578888888888888888753 3 67788888888888888753
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=8.2e-17 Score=176.27 Aligned_cols=190 Identities=23% Similarity=0.334 Sum_probs=121.7
Q ss_pred CCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEec
Q 046382 119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 198 (691)
Q Consensus 119 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 198 (691)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++. +. .+++|++|+|++|.+.+..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34445555555544332 456677777777777776 4542 33 36777777777777775433 677777777777
Q ss_pred cccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCC
Q 046382 199 SDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 278 (691)
Q Consensus 199 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 278 (691)
++|.+. .++. +..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 95 s~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 95 DENKIK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CSSCCC-CCTT--STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred cCCCCC-CChh--hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 777776 4442 35577777777777777653 3466677777777777776644 456666777777777777765
Q ss_pred cchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcc
Q 046382 279 EIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG 326 (691)
Q Consensus 279 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 326 (691)
..| +..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++.+
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 544 66667777777777766643 246666667777777666654
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.1e-17 Score=170.55 Aligned_cols=285 Identities=12% Similarity=0.028 Sum_probs=144.9
Q ss_pred CCCCCEEEccCCCCcccCchHHhhc-CCCCCEEEccCCccc--ccCCcCccCCCccCEEEccCCcCcccCchhhhhC---
Q 046382 92 QHDLKNADLSHLNLSGQFPNWLLEN-NTNLVMLLLANNSLF--GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY--- 165 (691)
Q Consensus 92 l~~L~~L~L~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~--- 165 (691)
++++++|+++++ +...-...+ .. +++|++|||++|++. ..... .++.++.+.+..| .+|...|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l-~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHL-RDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHH-HHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEET
T ss_pred hCceeEEEEecc-ccHHHHHHH-HHhhccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhccccc
Confidence 345666666653 111111122 23 666777777777664 11111 1122344444443 334444444
Q ss_pred -----CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCC
Q 046382 166 -----LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLT 240 (691)
Q Consensus 166 -----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 240 (691)
+++|++|++.+ .++.+.+.+|.++++|+++++++|.+. .++...|.++.++..+....+...
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~----------- 161 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY----------- 161 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH-----------
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh-----------
Confidence 55566666655 555455555555555666666555555 455555544444444433321110
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCC-EEEccCCcCCCcchhhhh----cCCCCCEEecCCCccCCCcchhh-cCCCCC
Q 046382 241 NLMRLQLDGNKFIGEIPESLSKCYLLG-GLYLSDNHLSGEIPRWLG----NLSALEGIRMPNNNLEGPIPIEF-CQLSAL 314 (691)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~----~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L 314 (691)
..........|..+..|+ .+.+.... .++..+. ...+++.+.+.++-.. .....+ ..+++|
T Consensus 162 ---------~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L 228 (329)
T 3sb4_A 162 ---------RFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNL 228 (329)
T ss_dssp ---------HTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred ---------hccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence 000111122333344443 23322211 1111111 1234444444433111 111111 125666
Q ss_pred CEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCcc-EEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382 315 KILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLV-TLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392 (691)
Q Consensus 315 ~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~-~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~ 392 (691)
+.+++++|.+.......| .+.+|+++++.+| ++.+...+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 666666666665555555 5666777777665 6666667777777777 777777 56655566777777888888777
Q ss_pred CcCcccCCcCCCCCCCCCEEE
Q 046382 393 NYIKGEIPVQLCQLKEVRLID 413 (691)
Q Consensus 393 n~i~~~~~~~~~~l~~L~~L~ 413 (691)
|+++.+.+.+|.++++|+.++
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEE
T ss_pred CccCccchhhhcCCcchhhhc
Confidence 777767777777777777765
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.2e-17 Score=162.20 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=120.6
Q ss_pred CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEE
Q 046382 334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413 (691)
Q Consensus 334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 413 (691)
+.+++.++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555666666666543 35567777778887777773 33 56777788888888888775443 77778888888
Q ss_pred ccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccce
Q 046382 414 LSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSG 493 (691)
Q Consensus 414 l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 493 (691)
+++|++++ +|.. . .++|+.
T Consensus 92 L~~N~l~~-l~~~-----------------------------------------------------------~-~~~L~~ 110 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-----------------------------------------------------------P-SACLSR 110 (263)
T ss_dssp CCSSCCSC-CTTC-----------------------------------------------------------C-CSSCCE
T ss_pred CCCCccCC-cCcc-----------------------------------------------------------c-cCcccE
Confidence 88887763 2210 0 146778
Q ss_pred EEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcc
Q 046382 494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 573 (691)
Q Consensus 494 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 573 (691)
|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++
T Consensus 111 L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 111 LFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 8888888874 33 577888888888888888754 3 577888888888888888765 5677888888888888888
Q ss_pred ccc
Q 046382 574 SGK 576 (691)
Q Consensus 574 ~~~ 576 (691)
++.
T Consensus 185 ~~~ 187 (263)
T 1xeu_A 185 VNE 187 (263)
T ss_dssp ECC
T ss_pred cCC
Confidence 765
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-16 Score=148.61 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=86.1
Q ss_pred cCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCC
Q 046382 90 YHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGL 169 (691)
Q Consensus 90 ~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L 169 (691)
..+++|++|++++|.+. .+|. +..+++|++|++++|.+... ..+..+++|++|++++|++++..+..+.. +++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTC
T ss_pred hhcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcC-CCCC
Confidence 34445666666666655 4442 35566666666666644222 24555666666666666665434444433 5666
Q ss_pred cEEEccCCcccccCchhhhCCCCCCEEeccccc-cccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEcc
Q 046382 170 MDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ-LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD 248 (691)
Q Consensus 170 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 248 (691)
++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++.. .+..+++|+.|+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAF 189 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEEC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEee
Confidence 666666666665555666666666666666665 44 444 2345666666666666665432 45566666666666
Q ss_pred CCcCc
Q 046382 249 GNKFI 253 (691)
Q Consensus 249 ~n~l~ 253 (691)
+|++.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 66654
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=151.81 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=106.6
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
.+++++|++++|.++ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|+.|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 467999999999998 7888999999999999999999988889999999999999999999999899999999999999
Q ss_pred ccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCCC
Q 046382 568 VAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLSK 604 (691)
Q Consensus 568 l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~~ 604 (691)
+++|++++..+. ...+..++.+++++|||.|+|.+.+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 999999987665 5567889999999999999998653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.1e-19 Score=195.59 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=54.6
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCccc-chhhcCCCcCCEEeCCCccccccCCc---ccccCCCC
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIPP---QLIVLNTL 563 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L 563 (691)
+++|+.|+|++|.+++ +| .++.+++|++|+|++|+|++.. |..+..+++|+.|+|++|++++..|. .+..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 4566666666666664 45 6777777888888888777665 77777788888888888877765442 23346777
Q ss_pred CeEEc
Q 046382 564 EVFKV 568 (691)
Q Consensus 564 ~~L~l 568 (691)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 77754
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.4e-17 Score=152.69 Aligned_cols=89 Identities=27% Similarity=0.372 Sum_probs=59.5
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
+++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45566666666666655566666666677777777777666666666667777777777777666666666667777777
Q ss_pred ccCCccccc
Q 046382 568 VAYNNLSGK 576 (691)
Q Consensus 568 l~~N~l~~~ 576 (691)
+++|++++.
T Consensus 133 L~~N~l~c~ 141 (192)
T 1w8a_A 133 LASNPFNCN 141 (192)
T ss_dssp CTTCCBCCS
T ss_pred eCCCCccCc
Confidence 776666654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.3e-16 Score=162.72 Aligned_cols=210 Identities=13% Similarity=0.031 Sum_probs=141.3
Q ss_pred CCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCc----CCCcchhhhhcCCCC
Q 046382 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH----LSGEIPRWLGNLSAL 290 (691)
Q Consensus 215 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~~~l~~l~~L 290 (691)
+++|+.+++.+ .++.....+|.++++|+.+++.+|.+....+.+|..+.++..+....+. ........+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555555 5555555555556666666666665555555556665555555544321 111223345566677
Q ss_pred C-EEecCCCccCCCcchhh----cCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEE
Q 046382 291 E-GIRMPNNNLEGPIPIEF----CQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTL 364 (691)
Q Consensus 291 ~-~L~l~~n~~~~~~~~~~----~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 364 (691)
+ .+.+.... .++..+ ....+++.+.+.++-......... .+++|+.+++++|.++.+...+|.+|++|+.+
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 6 55554432 222222 134567778777653221111111 37899999999999999999999999999999
Q ss_pred eccCCCCCCCcchhhcCCCCcc-EEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhc
Q 046382 365 DLSYNRLHGSIPNRIDRLPQLN-YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNT 430 (691)
Q Consensus 365 ~ls~n~i~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 430 (691)
++.+| ++.+.+..|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+.+|.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 99998 7767778899999999 999998 7887888999999999999999999986656666554
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=8.8e-17 Score=157.87 Aligned_cols=166 Identities=21% Similarity=0.216 Sum_probs=102.1
Q ss_pred cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382 70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149 (691)
Q Consensus 70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 149 (691)
+++.++++++.+++.. .+..+++|++|++++|.++ .++. +..+++|++|++++|++.+..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 5555666666665432 3556667777777777765 4552 4667777777777777655443 666777777777
Q ss_pred cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229 (691)
Q Consensus 150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 229 (691)
++|+++ .+|.... ++|++|++++|.+++. ..+..+++|++|++++|+++ .++ .+..+++|+.|++++|.++
T Consensus 93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCc
Confidence 777766 4443221 5677777777766642 24666667777777777666 343 2345666666666666666
Q ss_pred ccCcccccCCCCCCEEEccCCcCc
Q 046382 230 GHIFSKKFNLTNLMRLQLDGNKFI 253 (691)
Q Consensus 230 ~~~~~~~~~l~~L~~L~L~~n~l~ 253 (691)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 54 44555666666666666554
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.1e-16 Score=149.21 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=93.7
Q ss_pred cEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCc-CCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV 440 (691)
Q Consensus 362 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~ 440 (691)
+.+++++|.++ .+|..+. .++++|++++|++++..+. .+..+++|++|++++|++++..|..+..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56666666665 4444332 2677777777777655443 3667777777777777776555554432
Q ss_pred CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382 441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL 520 (691)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 520 (691)
+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 77 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 77 -----------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp -----------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred -----------------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566777777777777777777888888888888
Q ss_pred CCCcCCcccchhhcCCCcCCEEeCCCccccccCC
Q 046382 521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 554 (691)
Q Consensus 521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 554 (691)
++|++++..|..|..+++|++|+|++|++++..+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8888888888888888888888888888876544
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.4e-17 Score=181.22 Aligned_cols=183 Identities=19% Similarity=0.200 Sum_probs=116.4
Q ss_pred cCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCc-------------ccccCchhhhCCCCCCEEe-ccccccc
Q 046382 139 HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA-------------FNGSIPSSFADMKMLERLD-ISDNQLT 204 (691)
Q Consensus 139 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~ 204 (691)
..+++|+.|+|++|+++ .+|..+.. +++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34566666666666665 66666654 5566666665443 3456667777788888887 5666543
Q ss_pred cccchhHhh-------cCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCC
Q 046382 205 GEIPERMAT-------GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 277 (691)
Q Consensus 205 ~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 277 (691)
.++...+. ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 22221100 012467777777777653 33 666777777777777776 55666777777777777777776
Q ss_pred CcchhhhhcCCCCCEEecCCCccCCCc-chhhcCCCCCCEEEccCCcCcccCC
Q 046382 278 GEIPRWLGNLSALEGIRMPNNNLEGPI-PIEFCQLSALKILDLSNNSIFGTLP 329 (691)
Q Consensus 278 ~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~ 329 (691)
+ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+.++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 4 44 5667777777777777776654 6667777777777777777665544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.1e-15 Score=139.31 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=52.4
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCccc-chhhcCCCcCCEEeCCCccccccCC---cccccCCCC
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIP---PQLIVLNTL 563 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 563 (691)
+++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 344555555555555445555555666666666666666432 2556666666666666666664444 356666666
Q ss_pred CeEEccCCcccc
Q 046382 564 EVFKVAYNNLSG 575 (691)
Q Consensus 564 ~~L~l~~N~l~~ 575 (691)
+.|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 777666666653
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.4e-14 Score=150.75 Aligned_cols=264 Identities=10% Similarity=0.122 Sum_probs=140.8
Q ss_pred CCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEE
Q 046382 117 NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 196 (691)
Q Consensus 117 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 196 (691)
+..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .++.+...+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 344555555432 333444444443 4555555444 33 444444443 2455555553 3444444555555555555
Q ss_pred eccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcC
Q 046382 197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276 (691)
Q Consensus 197 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 276 (691)
++.+|.++ .++...|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~--------------- 246 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR--------------- 246 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT---------------
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc---------------
Confidence 55555555 45554444 345555555422 43344444444455555554432 2222233333
Q ss_pred CCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc-----ccCCCCC-CCCcccEEEccCCccccc
Q 046382 277 SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF-----GTLPSCF-SPAHIEQVHLSKNKIEGR 350 (691)
Q Consensus 277 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~-~~~~L~~L~l~~n~i~~~ 350 (691)
+ .+|+.+.+. +.+......+|..+++|+.+++.++.+. ......| .+++|+.+.+. +.++.+
T Consensus 247 ---------~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I 314 (401)
T 4fdw_A 247 ---------E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRIL 314 (401)
T ss_dssp ---------T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred ---------c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence 3 344444442 2233233445555555555555554432 2333344 56667777766 346666
Q ss_pred cccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCC-CCCEEEccCCCC
Q 046382 351 LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK-EVRLIDLSHNNL 419 (691)
Q Consensus 351 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l 419 (691)
...+|.+|++|+.+.+..+ ++......|.++ +|+.+++.+|.+.......|.+++ +++.|.+..+.+
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6677777888888888554 554555677777 888888888877766666777774 677787776554
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=9.7e-16 Score=139.63 Aligned_cols=138 Identities=21% Similarity=0.236 Sum_probs=118.4
Q ss_pred CCCCccEEeccCCCCC-CCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCC
Q 046382 357 DSPYLVTLDLSYNRLH-GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGG 435 (691)
Q Consensus 357 ~~~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~ 435 (691)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 4578999999999998 56777788999999999999999865 78899999999999999998767765543
Q ss_pred CCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeecc-chhhhcccC
Q 046382 436 HHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI-PTQIGYLSG 514 (691)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~ 514 (691)
+++|++|++++|.+++.. +..+..+++
T Consensus 94 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 94 ----------------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp ----------------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred ----------------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 678999999999998543 278999999
Q ss_pred CCeEeCCCCcCCcccc---hhhcCCCcCCEEeCCCccccccCCc
Q 046382 515 IHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPP 555 (691)
Q Consensus 515 L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (691)
|++|++++|.+++..+ ..+..+++|+.|++++|.+. .+|+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999999996655 58999999999999999987 3443
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.2e-16 Score=179.58 Aligned_cols=131 Identities=24% Similarity=0.314 Sum_probs=91.5
Q ss_pred cCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCC
Q 046382 295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374 (691)
Q Consensus 295 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~ 374 (691)
+..|.+. ..+..+..++.|+.|+|++|.+....+..+.+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 3334443 4556677777788888888877754445556777888888888777 45566788888888888888888 6
Q ss_pred cchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhh
Q 046382 375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429 (691)
Q Consensus 375 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 429 (691)
+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 6888888888888888888887 56777888888888888888888777766544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.4e-15 Score=135.39 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=88.4
Q ss_pred CCccEEecccCcCc-ccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCC
Q 046382 383 PQLNYLLLAHNYIK-GEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSR 461 (691)
Q Consensus 383 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (691)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--------------------------------- 61 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP--------------------------------- 61 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------------------------
Confidence 56667777777666 45566666677777777777766532 1110
Q ss_pred CCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcc-cchhhcCCCcCC
Q 046382 462 SAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT-IPTTFSNLKQIE 540 (691)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~ 540 (691)
.+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|+
T Consensus 62 -------------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 62 -------------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp -------------------------CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred -------------------------cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 156677777777777765777777788888888888888753 346778888888
Q ss_pred EEeCCCccccccCC---cccccCCCCCeEEccC
Q 046382 541 SLDLSYNLLHGKIP---PQLIVLNTLEVFKVAY 570 (691)
Q Consensus 541 ~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l~~ 570 (691)
+|++++|++++..+ ..+..+++|+.|++++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888888876655 4677788888887753
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=4.2e-15 Score=138.30 Aligned_cols=88 Identities=25% Similarity=0.241 Sum_probs=75.8
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
+++|+.|+|++|.+++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+++...+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 56788888888888877777888899999999999999888888899999999999999999877777788899999999
Q ss_pred ccCCcccc
Q 046382 568 VAYNNLSG 575 (691)
Q Consensus 568 l~~N~l~~ 575 (691)
+++|++.+
T Consensus 133 L~~N~~~C 140 (193)
T 2wfh_A 133 IGANPLYC 140 (193)
T ss_dssp CCSSCEEC
T ss_pred eCCCCeec
Confidence 99999875
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=1.7e-14 Score=149.94 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=178.7
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEc
Q 046382 240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDL 319 (691)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 319 (691)
..++.+.+.++ ++.....+|..+ +|+.+.+..+ +......+|.++ +|+.+.+.+ .+......+|..+++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 34444444432 333334455553 4666666554 443444455553 577777765 444455567778888888888
Q ss_pred cCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccC
Q 046382 320 SNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEI 399 (691)
Q Consensus 320 ~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 399 (691)
.+|.+.......|.+.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++......|.+ .+|+.+.+ .+.++.+.
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence 88888777777777788888888744 77777788888889999988875 45455566766 68888888 45566677
Q ss_pred CcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCc
Q 046382 400 PVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNM 479 (691)
Q Consensus 400 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (691)
..+|.++++|+.+++.+|.+.......+..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-------------------------------------------------- 293 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHP-------------------------------------------------- 293 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECT--------------------------------------------------
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECH--------------------------------------------------
Confidence 788999999999999887664100000000
Q ss_pred cceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccccc
Q 046382 480 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV 559 (691)
Q Consensus 480 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 559 (691)
..|. .+++|+.+++.+ .++......|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|..
T Consensus 294 -~aF~--~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 294 -YCLE--GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp -TTTT--TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred -HHhh--CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 0011 156777788874 466566677888888888888554 665667778888 8888888888877666667777
Q ss_pred CC-CCCeEEccCCcc
Q 046382 560 LN-TLEVFKVAYNNL 573 (691)
Q Consensus 560 l~-~L~~L~l~~N~l 573 (691)
++ +++.+.+..+.+
T Consensus 368 ~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 368 FPDDITVIRVPAESV 382 (401)
T ss_dssp SCTTCCEEEECGGGH
T ss_pred CCCCccEEEeCHHHH
Confidence 64 677777776654
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=2.3e-16 Score=177.35 Aligned_cols=176 Identities=19% Similarity=0.210 Sum_probs=99.0
Q ss_pred CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEE
Q 046382 333 SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412 (691)
Q Consensus 333 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 412 (691)
.++.|+.|+|++|.+..+. ..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 5677778888887777443 33446777888888888777 66777777778888888888777 567777777778888
Q ss_pred EccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccc
Q 046382 413 DLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS 492 (691)
Q Consensus 413 ~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 492 (691)
+|++|.++ .+|..+.. +++|+
T Consensus 299 ~L~~N~l~-~lp~~~~~----------------------------------------------------------l~~L~ 319 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGN----------------------------------------------------------LCNLQ 319 (727)
T ss_dssp ECCSSCCC-CCCSSTTS----------------------------------------------------------CTTCC
T ss_pred ECCCCCCC-ccChhhhc----------------------------------------------------------CCCcc
Confidence 88877775 55554332 56777
Q ss_pred eEEcCCCeeeeccchhhhcccC-CCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc--------cccccCCcccccCCCC
Q 046382 493 GIDLSCNKLTGEIPTQIGYLSG-IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN--------LLHGKIPPQLIVLNTL 563 (691)
Q Consensus 493 ~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L 563 (691)
.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|. .|+.|++++| .+.+..+..+..+..+
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~ 393 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKR 393 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhccccc
Confidence 7888888877777776655432 22467777777766664 3455666666 3333444445556666
Q ss_pred CeEEccCCccccc
Q 046382 564 EVFKVAYNNLSGK 576 (691)
Q Consensus 564 ~~L~l~~N~l~~~ 576 (691)
....+++|-+.+.
T Consensus 394 ~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 394 TFTVLSYNTLCQH 406 (727)
T ss_dssp --------CCCGG
T ss_pred ceeeeeccccccc
Confidence 7777777777543
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.9e-15 Score=134.70 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=103.3
Q ss_pred CCCccEEeccCCCCC-CCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCC
Q 046382 358 SPYLVTLDLSYNRLH-GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGH 436 (691)
Q Consensus 358 ~~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~ 436 (691)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 366788888888877 56666777888888888888888755 67788888999999999888666655443
Q ss_pred CcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeec-cchhhhcccCC
Q 046382 437 HEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE-IPTQIGYLSGI 515 (691)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 515 (691)
+++|++|++++|.+++. .+..+..+++|
T Consensus 87 ---------------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 87 ---------------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp ---------------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 57889999999998863 34788999999
Q ss_pred CeEeCCCCcCCcccc---hhhcCCCcCCEEeCCC
Q 046382 516 HALNLSHNNLTGTIP---TTFSNLKQIESLDLSY 546 (691)
Q Consensus 516 ~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~ 546 (691)
++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999987665 5789999999999874
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=2.3e-14 Score=149.90 Aligned_cols=334 Identities=12% Similarity=0.102 Sum_probs=165.7
Q ss_pred ccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccch
Q 046382 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209 (691)
Q Consensus 130 ~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 209 (691)
++.+...+|.++.+|+++.+..+ ++ .+....|..+++|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence 33444455666666666666532 44 455555555566666666433 44344455555555555544433 22 3333
Q ss_pred hHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCC
Q 046382 210 RMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSA 289 (691)
Q Consensus 210 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 289 (691)
..|.++..++... ... .......+|..+++|+.+.+.++. .......|.++.+
T Consensus 134 ~aF~~~~~~~~~~------------------------~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 134 EAFKGCDFKEITI------------------------PEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK 186 (394)
T ss_dssp TTTTTCCCSEEEC------------------------CTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred eeeeccccccccc------------------------Ccc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCC
Confidence 3333332211111 111 111222345555555555554332 1133344555555
Q ss_pred CCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCC
Q 046382 290 LEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369 (691)
Q Consensus 290 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n 369 (691)
|+.+.+..+ +......+|..+..|+.+.+..+... .....+...+|+.+.+... ++.+....+..+..++.+.+..+
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 665555544 22233445556666666655544322 2233344556666666432 33344455666677777776665
Q ss_pred CCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccC
Q 046382 370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGR 449 (691)
Q Consensus 370 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (691)
... .....+..+..++.+......+ ....|..+.+|+.+.+..+ +......++..
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~-------------------- 318 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFES-------------------- 318 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTT--------------------
T ss_pred cce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcC--------------------
Confidence 433 3444566666666666655432 2245666666666666543 22111111111
Q ss_pred cccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCccc
Q 046382 450 ASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI 529 (691)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 529 (691)
+++|+.+++.++ ++......|.++++|+.+++..+ ++.+.
T Consensus 319 --------------------------------------c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 319 --------------------------------------CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp --------------------------------------CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred --------------------------------------CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 345555555433 44344556666666777666655 55455
Q ss_pred chhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382 530 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV 565 (691)
Q Consensus 530 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 565 (691)
..+|.++++|+.+++..+ ++ .+...|.+.++|+.
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 566666667777666544 22 22334555555544
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=4.5e-15 Score=136.46 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=103.1
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
.+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 46899999999999977777889999999999999999988778889999999999999999988888889999999999
Q ss_pred ccCCcccccCCCC-CCCCCcCcCcccCCCCCCCCC
Q 046382 568 VAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 568 l~~N~l~~~~p~~-~~~~~~~~~~~~~Np~~c~~~ 601 (691)
+++|++++..+.. ..+..++.+++++||+.|+|+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999776653 567889999999999999986
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.1e-14 Score=133.78 Aligned_cols=91 Identities=23% Similarity=0.244 Sum_probs=64.1
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34555666666666544555567777777777777777766666677778888888888887766665667777888888
Q ss_pred ccCCcccccCC
Q 046382 568 VAYNNLSGKIP 578 (691)
Q Consensus 568 l~~N~l~~~~p 578 (691)
+++|++.+..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 88888776544
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=1.4e-13 Score=143.82 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=74.3
Q ss_pred chhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhC
Q 046382 86 PKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY 165 (691)
Q Consensus 86 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 165 (691)
..++.+|.+|+++++..+ ++ .+....|.++++|+.+++..+ +......+|.++.+|+.+.+..+ +. .+....+..
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeec
Confidence 345566666666666533 43 445555666666666666543 44444455666666666555433 22 333333333
Q ss_pred CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245 (691)
Q Consensus 166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 245 (691)
+. +....... .+..+...+|.++++|+.+.+.++. . .++...|.++.+|+.+.+..+ ++......+.++..|+.+
T Consensus 139 ~~-~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 CD-FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CC-CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cc-ccccccCc-cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 32 22222211 1222333455556666666655432 2 345555555555555555443 333333444444455544
Q ss_pred EccC
Q 046382 246 QLDG 249 (691)
Q Consensus 246 ~L~~ 249 (691)
.+..
T Consensus 214 ~~~~ 217 (394)
T 4fs7_A 214 EFPN 217 (394)
T ss_dssp CCCT
T ss_pred ecCC
Confidence 4443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=2.1e-14 Score=130.64 Aligned_cols=109 Identities=25% Similarity=0.272 Sum_probs=96.5
Q ss_pred ccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382 490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 569 (691)
Q Consensus 490 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 569 (691)
+.+.+++++|.++ .+|..+ .++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999998 567655 3889999999999998889999999999999999999998888788999999999999
Q ss_pred CCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382 570 YNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 570 ~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
+|++++..+. ...+..++.+++++|||.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999987775 5678889999999999999986
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=3.5e-16 Score=146.75 Aligned_cols=154 Identities=21% Similarity=0.284 Sum_probs=117.5
Q ss_pred CCCCccEEeccCCCCCCCcch------hhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhc
Q 046382 357 DSPYLVTLDLSYNRLHGSIPN------RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNT 430 (691)
Q Consensus 357 ~~~~L~~L~ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 430 (691)
..+.++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~- 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV- 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence 344555556666655555444 78888999999999999885 55 7888889999999999887 45543332
Q ss_pred cccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhh
Q 046382 431 ALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG 510 (691)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 510 (691)
+++|++|++++|++++ +| .+.
T Consensus 92 ---------------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 92 ---------------------------------------------------------ADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp ---------------------------------------------------------HHHCSEEEEEEEECCC-HH-HHH
T ss_pred ---------------------------------------------------------CCcCCEEECcCCcCCc-CC-ccc
Confidence 5788999999999985 44 688
Q ss_pred cccCCCeEeCCCCcCCcccc-hhhcCCCcCCEEeCCCccccccCCcc----------cccCCCCCeEEccCCcccc
Q 046382 511 YLSGIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQ----------LIVLNTLEVFKVAYNNLSG 575 (691)
Q Consensus 511 ~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~~ 575 (691)
.+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|+.|| +|.++.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88999999999999985433 47888999999999999998776653 77888999886 666653
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.8e-14 Score=129.31 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=48.1
Q ss_pred cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccch--hhcCCCcCCEEeCCCccccccCCcc----cccCCC
Q 046382 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT--TFSNLKQIESLDLSYNLLHGKIPPQ----LIVLNT 562 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~ 562 (691)
++|++|++++|.+++..+..+..+++|++|+|++|+++ .+|. .+..+++|+.|++++|+++ ..|.. +..+++
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ 141 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT
T ss_pred CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCc
Confidence 44555555555555333344456666666666666665 3343 5666666666666666665 33432 566666
Q ss_pred CCeEEccCCccc
Q 046382 563 LEVFKVAYNNLS 574 (691)
Q Consensus 563 L~~L~l~~N~l~ 574 (691)
|+.|++++|.+.
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 666666666654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.1e-14 Score=129.14 Aligned_cols=134 Identities=20% Similarity=0.203 Sum_probs=93.5
Q ss_pred hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCC
Q 046382 89 LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG 168 (691)
Q Consensus 89 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~ 168 (691)
+.++++|++|++++|.++ .+|. +....++|++|++++|.+.+. ..+..+++|++|++++|+++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 345667788888888776 4454 223334888888888887665 46777888888888888887 556555445778
Q ss_pred CcEEEccCCcccccCch--hhhCCCCCCEEeccccccccccchh---HhhcCCCCCEEEcccccCC
Q 046382 169 LMDLNLSRNAFNGSIPS--SFADMKMLERLDISDNQLTGEIPER---MATGCFSLKILALSNNSLQ 229 (691)
Q Consensus 169 L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~ 229 (691)
|++|++++|.+. .+|. .+..+++|++|++++|.++ .+|.. .+..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888876 3444 6777888888888888877 56654 3456777777777776654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=5.6e-14 Score=128.18 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=91.5
Q ss_pred ceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCC
Q 046382 492 SGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 571 (691)
Q Consensus 492 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 571 (691)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899999987 6676553 78999999999999888888999999999999999999777777788999999999999
Q ss_pred cccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382 572 NLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP 601 (691)
Q Consensus 572 ~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~ 601 (691)
+|++..+. ...+..++.+++++|||.|+|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99987665 5667888889999999999885
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.7e-13 Score=123.22 Aligned_cols=91 Identities=23% Similarity=0.190 Sum_probs=84.4
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
.+++++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 46789999999999988899999999999999999999988888899999999999999999988888899999999999
Q ss_pred ccCCcccccCC
Q 046382 568 VAYNNLSGKIP 578 (691)
Q Consensus 568 l~~N~l~~~~p 578 (691)
+++|++.+..+
T Consensus 109 L~~N~~~c~c~ 119 (170)
T 3g39_A 109 LLNNPWDCACS 119 (170)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCCCCCch
Confidence 99999987644
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=6.9e-13 Score=120.95 Aligned_cols=91 Identities=23% Similarity=0.209 Sum_probs=83.3
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 567 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 567 (691)
.++|++|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 46799999999999988899999999999999999999987777789999999999999999977777799999999999
Q ss_pred ccCCcccccCC
Q 046382 568 VAYNNLSGKIP 578 (691)
Q Consensus 568 l~~N~l~~~~p 578 (691)
+++|++.+..+
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999986543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=6.4e-15 Score=138.08 Aligned_cols=130 Identities=21% Similarity=0.247 Sum_probs=64.1
Q ss_pred CCCCCEEEccCCCCcccCch------HHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhC
Q 046382 92 QHDLKNADLSHLNLSGQFPN------WLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY 165 (691)
Q Consensus 92 l~~L~~L~L~~~~~~~~~~~------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 165 (691)
...++.++++.+.+.+..|. . +..+++|++|++++|++.+ ++ .+..+++|++|++++|.++ .+|..+..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~- 91 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV- 91 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred cccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence 34445555555444444332 3 3556666666666665544 23 4555555555555555555 44443332
Q ss_pred CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccch-hHhhcCCCCCEEEcccccCC
Q 046382 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE-RMATGCFSLKILALSNNSLQ 229 (691)
Q Consensus 166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~ 229 (691)
+++|++|++++|.+++ +| .+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccc
Confidence 3455555555555553 22 3555555555555555554 3222 22334444444444444443
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=4e-11 Score=125.24 Aligned_cols=315 Identities=11% Similarity=0.094 Sum_probs=170.1
Q ss_pred hhcCCC-CCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCc---ccccCCcCccCCCccCEEEccCCcCcccCchhhh
Q 046382 88 FLYHQH-DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS---LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIG 163 (691)
Q Consensus 88 ~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 163 (691)
++.++. .|+.+.+..+ ++ .+....|.++++|+.+.+..+. ++.....+|..+.+|+.+.+..+ ++ .++...+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence 344443 3666666543 33 4444455666666666665542 44444455666666666655543 33 4445555
Q ss_pred hCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCC
Q 046382 164 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLM 243 (691)
Q Consensus 164 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 243 (691)
..+.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++ .+....|. ..+|+.+.+..+-. ......+..+.+++
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCccc-ccccchhhhccccc
Confidence 55666666666533 33344555666666666666544 33 44455544 34566666654322 23334455555665
Q ss_pred EEEccCCcCcccCCcc-------------ccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcC
Q 046382 244 RLQLDGNKFIGEIPES-------------LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ 310 (691)
Q Consensus 244 ~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 310 (691)
................ +.....+..+.+.. .+......+|..+..|+.+.+.++... ....+|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence 5554443322111000 11122333333322 122233445667777777777655433 44556777
Q ss_pred CCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEe
Q 046382 311 LSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLL 389 (691)
Q Consensus 311 l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 389 (691)
++.|+.+.+.. .+.......| .+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++......|.+|++|+.++
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 77788887753 4444555555 5677888887653 55566677888888888888654 5545566788888888888
Q ss_pred cccCcCcccCCcCCCCCCCCCEEEccCCCC
Q 046382 390 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419 (691)
Q Consensus 390 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 419 (691)
+.++.... ..+..+.+|+.+.+..+.+
T Consensus 364 ~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 364 YSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ESSCHHHH---HTCBCCCCC----------
T ss_pred ECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 87775432 3556667777777766544
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=9.2e-13 Score=135.35 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=94.0
Q ss_pred ceEEcCCC-eeeeccchhhhcccCCCeEeCCC-CcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382 492 SGIDLSCN-KLTGEIPTQIGYLSGIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 569 (691)
Q Consensus 492 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 569 (691)
..++++++ +++ .+|. +..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 888 5777 89999999999996 99998888889999999999999999999888899999999999999
Q ss_pred CCcccccCCCCCCCCCcCcCcccCCCCCCCCCCC
Q 046382 570 YNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLS 603 (691)
Q Consensus 570 ~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~ 603 (691)
+|+|++..+.......++.+++.+|++.|+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGH
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCccH
Confidence 9999987766544444888899999999998754
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=8.3e-11 Score=122.82 Aligned_cols=334 Identities=13% Similarity=0.111 Sum_probs=173.1
Q ss_pred cCchhhhhCCC-CCcEEEccCCcccccCchhhhCCCCCCEEeccccc---cccccchhHhhcCCCCCEEEcccccCCccC
Q 046382 157 HIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ---LTGEIPERMATGCFSLKILALSNNSLQGHI 232 (691)
Q Consensus 157 ~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 232 (691)
.+....|..+. .|+.+.+..+ ++.+...+|.++++|+++.+..|. ++ .+....|.++.+|+.+.+..+ ++...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence 45555555453 5888888653 666777788888888888887663 55 667777777778877766544 44445
Q ss_pred cccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCC
Q 046382 233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312 (691)
Q Consensus 233 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 312 (691)
...|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +......+|. ...|+.+.+..+... ....+|..+.
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcc
Confidence 566677777887777644 33344566777777777777654 3323333443 356777776654332 3445566666
Q ss_pred CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392 (691)
Q Consensus 313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~ 392 (691)
.++................+... .........+.....+..+.+... +.......|..+..|+.+.+.+
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKS----------ANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEEC----------TTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT
T ss_pred ccceecccccccccccceeeccc----------ccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccc
Confidence 66666655443321111111000 000000001111222233332211 1112233455555555555544
Q ss_pred CcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccE
Q 046382 393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETV 472 (691)
Q Consensus 393 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (691)
+... ....+|.++++|+.+.+.. .++.....+|..
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~------------------------------------------- 309 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAG------------------------------------------- 309 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTT-------------------------------------------
T ss_pred ccce-ecCcccccccccccccCCC-cccccCceeecC-------------------------------------------
Confidence 3332 4445555566666665532 222111111111
Q ss_pred EEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc
Q 046382 473 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 552 (691)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 552 (691)
+.+|+++++..+ ++......|.++++|+.+.|..+ ++.+...+|.++++|+.+++.++....
T Consensus 310 ---------------c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~- 371 (394)
T 4gt6_A 310 ---------------CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW- 371 (394)
T ss_dssp ---------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-
T ss_pred ---------------CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-
Confidence 345555666543 44344566777777777777544 554556677777777777777765432
Q ss_pred CCcccccCCCCCeEEccCCcc
Q 046382 553 IPPQLIVLNTLEVFKVAYNNL 573 (691)
Q Consensus 553 ~p~~l~~l~~L~~L~l~~N~l 573 (691)
..+.....|+.+.+..|.+
T Consensus 372 --~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 372 --NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp --HTCBCCCCC----------
T ss_pred --hhhhccCCCCEEEeCCCCE
Confidence 3455566677776665543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.7e-13 Score=141.07 Aligned_cols=138 Identities=17% Similarity=0.056 Sum_probs=65.6
Q ss_pred CCCCEEEccCCcccccCCcCc-cCCCccCEEEccCCcCcccCchhhh----hCCCCCcEEEccCCccccc----Cchhhh
Q 046382 118 TNLVMLLLANNSLFGSFRMPI-HSHQNLATLDVSNNFFHGHIPVEIG----TYLPGLMDLNLSRNAFNGS----IPSSFA 188 (691)
Q Consensus 118 ~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~----~~l~~L~~L~L~~n~i~~~----~~~~~~ 188 (691)
++|++|+|++|.+.+.....+ ..+++|++|+|++|.+++.....+. ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555533221111 1234555556665555432222221 1234566666666655431 223345
Q ss_pred CCCCCCEEeccccccccccch---hHhhcCCCCCEEEcccccCCccCc----ccccCCCCCCEEEccCCcCccc
Q 046382 189 DMKMLERLDISDNQLTGEIPE---RMATGCFSLKILALSNNSLQGHIF----SKKFNLTNLMRLQLDGNKFIGE 255 (691)
Q Consensus 189 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 255 (691)
.+++|++|++++|.+++.... ..+...++|+.|++++|.++.... ..+...++|++|++++|.++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 556666666666665522111 112334566666666666654222 2233456666666666666543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=2.4e-13 Score=139.94 Aligned_cols=168 Identities=17% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCCCCEEEccCCcccccCCcCc----c-CCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhh----
Q 046382 117 NTNLVMLLLANNSLFGSFRMPI----H-SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF---- 187 (691)
Q Consensus 117 l~~L~~L~L~~n~~~~~~~~~l----~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---- 187 (691)
++.|++|++++|.+.......+ . ..++|++|+|++|.+++.....+...+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4567777777777654322222 2 236788888888877644444444445677777777777764433333
Q ss_pred -hCCCCCCEEeccccccccccchhH---hhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCC
Q 046382 188 -ADMKMLERLDISDNQLTGEIPERM---ATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKC 263 (691)
Q Consensus 188 -~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 263 (691)
...++|++|++++|.+++.....+ +...++|++|++++|.+++.... .++..+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcC
Confidence 235667777777776653211111 13345555555555555432110 112233344
Q ss_pred CCCCEEEccCCcCCCc----chhhhhcCCCCCEEecCCCccCCCc
Q 046382 264 YLLGGLYLSDNHLSGE----IPRWLGNLSALEGIRMPNNNLEGPI 304 (691)
Q Consensus 264 ~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~ 304 (691)
++|+.|++++|.+++. +...+...++|++|++++|.+++..
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 4555555555555432 2223334455666666666555433
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=1.7e-11 Score=125.75 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=80.4
Q ss_pred ccccceEEcCC-CeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeE
Q 046382 488 LTSMSGIDLSC-NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF 566 (691)
Q Consensus 488 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 566 (691)
+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|||++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 57899999996 999988889999999999999999999999999999999999999999999977777777666 9999
Q ss_pred EccCCccccc
Q 046382 567 KVAYNNLSGK 576 (691)
Q Consensus 567 ~l~~N~l~~~ 576 (691)
++++|++.+.
T Consensus 109 ~l~~N~~~c~ 118 (347)
T 2ifg_A 109 VLSGNPLHCS 118 (347)
T ss_dssp ECCSSCCCCC
T ss_pred EeeCCCccCC
Confidence 9999999753
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=3.8e-09 Score=109.63 Aligned_cols=287 Identities=11% Similarity=0.066 Sum_probs=126.7
Q ss_pred hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCC
Q 046382 89 LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG 168 (691)
Q Consensus 89 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~ 168 (691)
+....+|+.+.+... ++ .+++..|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .+....+.. .+
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence 333445555555432 33 444444566666666666443 444444455554 4555555432 33 444444443 35
Q ss_pred CcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCc------------cCcccc
Q 046382 169 LMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG------------HIFSKK 236 (691)
Q Consensus 169 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~ 236 (691)
|+.+.+..+ ++.+....|.+. +++.+.+..+ ++ .+....+..+..++...+..+.... .....+
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 666666543 222333334433 3444444332 22 3334444555555555554432211 011122
Q ss_pred cCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCE
Q 046382 237 FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI 316 (691)
Q Consensus 237 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 316 (691)
.....+..+.+.... .......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.....+|..+.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 223334444333322 1122334444555555555433 22233334445555555555443 22233344555555555
Q ss_pred EEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecc
Q 046382 317 LDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA 391 (691)
Q Consensus 317 L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~ 391 (691)
+.+..+ +.......| .+.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+.
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 555432 222222333 3455555555544444444445555555555555432 332333344455555555443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=1.8e-08 Score=104.47 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=41.8
Q ss_pred ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccC
Q 046382 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 560 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 560 (691)
+++|+.+++.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+-..+|.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 345555666555555444556666777777777543 54445566777777777776544 544444555544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=6.2e-09 Score=105.97 Aligned_cols=202 Identities=16% Similarity=0.151 Sum_probs=99.0
Q ss_pred cccEEEecCCCCCC-C-------cchhhcCCCCCCEEEccCCCCc---------ccCchHHhhcCCCCCEEEccCCcccc
Q 046382 70 QLTSISLSGYIDGG-T-------FPKFLYHQHDLKNADLSHLNLS---------GQFPNWLLENNTNLVMLLLANNSLFG 132 (691)
Q Consensus 70 ~L~~L~L~~~~~~~-~-------~~~~l~~l~~L~~L~L~~~~~~---------~~~~~~~~~~l~~L~~L~L~~n~~~~ 132 (691)
.++.|.+..+...+ . +...+.++++|+.|.+...... +.+. .++..+++|+.|+|++|.-..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence 56666666554331 1 1223445677788777654221 1122 334667777777777762111
Q ss_pred cCCcCccCCCccCEEEccCCcCcccCchhhh-hCCCCCcEEEccCC--ccccc-----Cchhh--hCCCCCCEEeccccc
Q 046382 133 SFRMPIHSHQNLATLDVSNNFFHGHIPVEIG-TYLPGLMDLNLSRN--AFNGS-----IPSSF--ADMKMLERLDISDNQ 202 (691)
Q Consensus 133 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~L~~n--~i~~~-----~~~~~--~~l~~L~~L~L~~n~ 202 (691)
.+. +. +++|++|++..|.+.......+. ..+|+|++|+|+.+ ...+. +...+ ..+++|++|++.+|.
T Consensus 187 -l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 -IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp -CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred -ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 111 22 66777777777666533333333 13667777776431 11100 00111 124555555555555
Q ss_pred cccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcCCC
Q 046382 203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEI----PESLSKCYLLGGLYLSDNHLSG 278 (691)
Q Consensus 203 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~ 278 (691)
+.+..+..++. ...+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+++
T Consensus 264 i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 264 EQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp THHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 44322222221 012455666666666555421 2223445667777777776665
Q ss_pred cchhhhhc-CCCCCEEecCCCc
Q 046382 279 EIPRWLGN-LSALEGIRMPNNN 299 (691)
Q Consensus 279 ~~~~~l~~-l~~L~~L~l~~n~ 299 (691)
.....+.. + ...++++.++
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 44444443 2 3456666655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=5.9e-10 Score=113.51 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=101.4
Q ss_pred CCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHh-hcCCCCCEEEccCC--ccccc-----CCcCc
Q 046382 67 PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLL-ENNTNLVMLLLANN--SLFGS-----FRMPI 138 (691)
Q Consensus 67 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~l~~L~~L~L~~n--~~~~~-----~~~~l 138 (691)
..++|++|+++++.-. .++. + .+++|++|++..+.+.......+. ..+++|++|+|+.+ ...+. +...+
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 3448888888876311 2222 3 377899999988877643333332 26899999988632 11111 11112
Q ss_pred --cCCCccCEEEccCCcCcccCchhhhh--CCCCCcEEEccCCcccccC----chhhhCCCCCCEEeccccccccccchh
Q 046382 139 --HSHQNLATLDVSNNFFHGHIPVEIGT--YLPGLMDLNLSRNAFNGSI----PSSFADMKMLERLDISDNQLTGEIPER 210 (691)
Q Consensus 139 --~~l~~L~~L~Ls~n~i~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~ 210 (691)
..+|+|++|++++|.+.+..+..++. .+++|++|+|+.|.+.... +..+..+++|+.|++++|.+++..-..
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 35789999999999887555444443 3678999999999988543 334456799999999999987544443
Q ss_pred HhhcCCCCCEEEccccc
Q 046382 211 MATGCFSLKILALSNNS 227 (691)
Q Consensus 211 ~~~~l~~L~~L~l~~n~ 227 (691)
+...+ ...++++.++
T Consensus 327 l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHC--CSEEECCSBC
T ss_pred HHHHc--CCEEEecCCc
Confidence 43223 3568888776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=7e-08 Score=88.48 Aligned_cols=60 Identities=8% Similarity=0.241 Sum_probs=27.2
Q ss_pred ccceEEcCCCeeeec----cchhhhcccCCCeEeC--CCCcCCcc----cchhhcCCCcCCEEeCCCccc
Q 046382 490 SMSGIDLSCNKLTGE----IPTQIGYLSGIHALNL--SHNNLTGT----IPTTFSNLKQIESLDLSYNLL 549 (691)
Q Consensus 490 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 549 (691)
+|++|+|++|.+++. +...+...++|++|+| ++|.|... +...+...++|++|+|++|.+
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 344444444444422 2233444445555555 45555422 222333345555555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=8.8e-08 Score=87.82 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=66.4
Q ss_pred cccceEEcCCCeeeec----cchhhhcccCCCeEeCCCCcCCcc----cchhhcCCCcCCEEeC--CCcccccc----CC
Q 046382 489 TSMSGIDLSCNKLTGE----IPTQIGYLSGIHALNLSHNNLTGT----IPTTFSNLKQIESLDL--SYNLLHGK----IP 554 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p 554 (691)
++|++|+|++|.+... +...+...++|++|+|++|.|... +...+...++|++|+| ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 4567777777776532 344566678999999999999753 4566778899999999 88999754 34
Q ss_pred cccccCCCCCeEEccCCccc
Q 046382 555 PQLIVLNTLEVFKVAYNNLS 574 (691)
Q Consensus 555 ~~l~~l~~L~~L~l~~N~l~ 574 (691)
..+...++|+.|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 45666789999999999885
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=3.4e-07 Score=88.08 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=30.7
Q ss_pred ccccceEEcCCCeeee--ccchhhhcccCCCeEeCCCCcCCcccchhhcCCC--cCCEEeCCCccccccC
Q 046382 488 LTSMSGIDLSCNKLTG--EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKI 553 (691)
Q Consensus 488 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~ 553 (691)
+++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|++.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 4455555555555554 2234444555555555555555532 1122222 5555555555555433
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=3e-07 Score=88.51 Aligned_cols=89 Identities=22% Similarity=0.288 Sum_probs=68.1
Q ss_pred cccce--EEcCCCeee---eccchhhhcccCCCeEeCCCCcCCc--ccchhhcCCCcCCEEeCCCccccccCCcccccCC
Q 046382 489 TSMSG--IDLSCNKLT---GEIPTQIGYLSGIHALNLSHNNLTG--TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN 561 (691)
Q Consensus 489 ~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 561 (691)
+.|.. ++++.|... +..+....++++|++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. +.+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 44555 778888543 2223333678999999999999997 3457788999999999999999865 3344444
Q ss_pred --CCCeEEccCCcccccCCC
Q 046382 562 --TLEVFKVAYNNLSGKIPD 579 (691)
Q Consensus 562 --~L~~L~l~~N~l~~~~p~ 579 (691)
+|+.|++++|++++.+|.
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSS
T ss_pred cCCcceEEccCCcCccccCc
Confidence 999999999999987764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=8.8e-07 Score=78.80 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=59.5
Q ss_pred ccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCC-CcccCchHHhhcC----CCCCEEEccCCc-ccccCCcCccCCC
Q 046382 69 FQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLN-LSGQFPNWLLENN----TNLVMLLLANNS-LFGSFRMPIHSHQ 142 (691)
Q Consensus 69 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~l~~l~ 142 (691)
.+|++||+++|.++......+..+++|++|+|++|. +++..-..+ ..+ ++|++|+|++|. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 378888888888877766777888888888888885 654333333 333 368888888874 5554444566677
Q ss_pred ccCEEEccCCc-Cc
Q 046382 143 NLATLDVSNNF-FH 155 (691)
Q Consensus 143 ~L~~L~Ls~n~-i~ 155 (691)
+|++|++++|. ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 77777777774 44
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.4e-06 Score=77.52 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=69.3
Q ss_pred cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCc-CCcccchhhcCC----CcCCEEeCCCcc-ccccCCcccccCCC
Q 046382 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNN-LTGTIPTTFSNL----KQIESLDLSYNL-LHGKIPPQLIVLNT 562 (691)
Q Consensus 489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 562 (691)
..|++||++++.++..--..+..+++|++|+|++|. |+..--..+..+ ++|++|+|++|. |+...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999987767778899999999999995 764444445554 479999999985 88766667888999
Q ss_pred CCeEEccCCc
Q 046382 563 LEVFKVAYNN 572 (691)
Q Consensus 563 L~~L~l~~N~ 572 (691)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.62 E-value=4.4e-05 Score=64.78 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=39.3
Q ss_pred eEeCCCCcCC-cccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCC
Q 046382 517 ALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP 595 (691)
Q Consensus 517 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np 595 (691)
.++.+++.++ ..+|..+ -++|+.|+|++|+|+...+..|..+++|+.| ++.|||
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L-----------------------~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTA-----------------------HLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEE-----------------------ECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEE-----------------------EecCCC
Confidence 5677777775 2344332 2357777777777776555566666666554 566788
Q ss_pred CCCCCCCC
Q 046382 596 FLCGKPLS 603 (691)
Q Consensus 596 ~~c~~~l~ 603 (691)
|.|+|.+.
T Consensus 67 ~~CdC~l~ 74 (130)
T 3rfe_A 67 WRCDCRLV 74 (130)
T ss_dssp CBCSGGGH
T ss_pred eeccCccH
Confidence 88888764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.12 E-value=0.00028 Score=63.91 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=7.2
Q ss_pred hcCCCCCEEEccCC
Q 046382 115 ENNTNLVMLLLANN 128 (691)
Q Consensus 115 ~~l~~L~~L~L~~n 128 (691)
.+-+.|++|+|+++
T Consensus 38 ~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 38 EDDTDLKEVNINNM 51 (197)
T ss_dssp TTCSSCCEEECTTC
T ss_pred hcCCCccEEECCCC
Confidence 34455555555553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.01 E-value=0.0005 Score=62.26 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=18.7
Q ss_pred CCCcEEEccCC-cccc----cCchhhhCCCCCCEEeccccccc
Q 046382 167 PGLMDLNLSRN-AFNG----SIPSSFADMKMLERLDISDNQLT 204 (691)
Q Consensus 167 ~~L~~L~L~~n-~i~~----~~~~~~~~l~~L~~L~L~~n~l~ 204 (691)
+.|++|+|++| .|.. .+.+.+..-+.|++|+|++|.+.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 45566666553 4432 12233444455555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0023 Score=54.01 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=48.1
Q ss_pred ceEEcCCCeee-eccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382 492 SGIDLSCNKLT-GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550 (691)
Q Consensus 492 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 550 (691)
..++.+++.++ ..+|..+ -++|+.|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 3556443 247999999999999888888999999999999999885
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.10 E-value=26 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=28.0
Q ss_pred ccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC
Q 046382 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN 393 (691)
Q Consensus 346 ~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n 393 (691)
.++.+....|.+|.+|+.+.+-.+ ++.+....|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444555566667777777766654 23244456666777776666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.20 E-value=34 Score=26.52 Aligned_cols=48 Identities=8% Similarity=-0.035 Sum_probs=38.3
Q ss_pred CCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCC
Q 046382 369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417 (691)
Q Consensus 369 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 417 (691)
..++.+....|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566678999999999999865 55567789999999999998764
Done!