BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046385
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4I2W2|GEM1_GIBZE Mitochondrial Rho GTPase 1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=GEM1 PE=3 SV=1
Length = 627
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 67 MDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTV-- 124
+D GF+ L +L+ EKG +H T+ + F +T S +L ++FI+ +F+ ++
Sbjct: 247 IDLPGFLQLNKLYAEKG-----RHETIWIILRKFHYTDSLSLEDKFIRPKFEVPEYSSAE 301
Query: 125 -----HRYFHEVLSAMMKFSKEMITPPSFTDNSRGIRNTRLRQIFKRSPVVPLNLQKMSR 179
+R+F ++ + F K DN G+ + L +F +P +P + S
Sbjct: 302 LSPAGYRFFVDLF---LIFDK---------DNDGGLNDEELEALFAPAPGLPSSWTDSS- 348
Query: 180 MPQFLTDQMGKSKGH 194
F + + GH
Sbjct: 349 ---FPSSTVRNEAGH 360
>sp|Q7RZA2|GEM1_NEUCR Mitochondrial Rho GTPase 1 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=gem-1 PE=3 SV=1
Length = 629
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 28/135 (20%)
Query: 67 MDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTV-- 124
+D GF+ L +L+ EKG +H T+ + + +T S +L + F+ RF +
Sbjct: 248 LDLRGFLQLNKLYAEKG-----RHETIWIILRKYHYTDSLSLEDSFLHPRFDVPDYASAE 302
Query: 125 -----HRYFHEVLSAMMKFSKEMITPPSFTDNSRGIRNTRLRQIFKRSPVVPLNLQKMSR 179
+R+F ++ + F K DN G+ + L +F +P +P + + S
Sbjct: 303 LSPAGYRFFMDLF---LTFDK---------DNDGGLNDRELAALFAPTPGLPHSWAETS- 349
Query: 180 MPQFLTDQMGKSKGH 194
F + + GH
Sbjct: 350 ---FPSTTVRNEAGH 361
>sp|P75183|Y612_MYCPN Uncharacterized protein MG414 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_612 PE=3 SV=1
Length = 997
Score = 33.9 bits (76), Expect = 0.91, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMKFSKEMITPPSFTD 150
+++ K A ++ S+ +++ IK R T +R +V +++ K ++ P D
Sbjct: 333 FSIDNKQANAYWSSSNGFKDKVIKDRKIMEAFTRNR---QVTQSILNMGKNVVVKPLTDD 389
Query: 151 NSRGIRNTRLRQIFKRSPVVPLNLQK 176
+ + + + IFK +P++P+N Q+
Sbjct: 390 EEQSLFSNKW-DIFKYTPIIPVNAQR 414
>sp|Q2UM43|GEM1_ASPOR Mitochondrial Rho GTPase 1 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=gem1 PE=3 SV=1
Length = 633
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 67 MDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHR 126
+D GFI L +++ EKG +H TV + F +T + +L+ F+ RF+ V
Sbjct: 248 IDCRGFIHLNKMYAEKG-----RHETVWIILRAFQYTDNLSLQESFLHPRFE-----VPP 297
Query: 127 YFHEVLSAM-MKFSKEMITPPSFTDNSRGIRNTRLRQIFKRSPVVPLNLQKMSRMPQFLT 185
Y LS +F + S DN G+ + L +F +P +P + S F +
Sbjct: 298 YASAELSPEGYRFFVNLFL-LSDKDNDGGLNDAELASLFAPTPGLPASWADGS----FPS 352
Query: 186 DQMGKSKGH 194
+ GH
Sbjct: 353 STVRNEAGH 361
>sp|P07071|NRDD_BPT4 Anaerobic ribonucleoside-triphosphate reductase OS=Enterobacteria
phage T4 GN=NRDD PE=1 SV=4
Length = 605
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 9 DIKIGVRRILRKQLIMLVKKLLKGSTKRQRVSTSSLTGSLYIQELLNGSPIFCYDLMRMD 68
++ I V R + ++++ + LK T+R + SLY N CY ++D
Sbjct: 406 ELNILVGRDIGREILTKMNAHLKQWTER-----TGFAFSLYSTPAEN----LCYRFCKLD 456
Query: 69 KNGFISLCQLFKEKGWLSDSKHLTVEEKMAMF 100
+ S+ + +KGW ++S H++VEE + F
Sbjct: 457 TEKYGSVKDV-TDKGWYTNSFHVSVEENITPF 487
>sp|Q8BG67|EFR3A_MOUSE Protein EFR3 homolog A OS=Mus musculus GN=Efr3a PE=1 SV=1
Length = 819
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 131 VLSAMMKFSKEMITPPSFTDNSRGIRNTRLRQ--------IFKRSPVVPLNLQKMSRMPQ 182
+++A + F +MI P+F + + TR + IF+ ++P +L+K +
Sbjct: 598 LVAAYLNFVSQMIAVPAFCQHVSKVIETRTMEAPYFLPEHIFRDKCMLPKSLEKHDKNLY 657
Query: 183 FLTDQMGKSKG 193
FLT+++ +S G
Sbjct: 658 FLTNKIAESLG 668
>sp|Q9P7R8|YHV3_SCHPO Uncharacterized protein C211.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC211.03c PE=1 SV=1
Length = 1462
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 124 VHRYFHEVLSAM---MKFSKEMITPPSFTDNSRGIRNTRLRQIFKRSPVVPLNLQKMSRM 180
V H+V+S++ + S + TP SFT+ R +TR R R +V L +SR+
Sbjct: 402 VETSLHKVVSSLDLSEEISPDRATPTSFTERKRFAFDTRNRPPEVRELIVEC-LGSLSRI 460
Query: 181 PQFLTD 186
P FL D
Sbjct: 461 PYFLID 466
>sp|Q7VRR8|SYH_BLOFL Histidine--tRNA ligase OS=Blochmannia floridanus GN=hisS PE=3 SV=1
Length = 433
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 15 RRILRKQLIMLVKKL---LKGSTKRQRVSTSSL---TGSLYIQELLNGSPIFCYDLMRMD 68
R I RK+LI ++K L S+KR+ S T ++ I+ELL +P+ L
Sbjct: 180 RMIYRKKLISFLEKNKHNLDDSSKRRLYSNPMRILDTKNVKIKELLAHAPVLSDYLDDCS 239
Query: 69 KNGFISLCQLF 79
KN F++LC+L
Sbjct: 240 KNHFLNLCRLL 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,039,801
Number of Sequences: 539616
Number of extensions: 3011750
Number of successful extensions: 8118
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8116
Number of HSP's gapped (non-prelim): 11
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)