Query 046385
Match_columns 218
No_of_seqs 163 out of 362
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 20:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jhg_A Trp operon repressor; c 95.8 0.0034 1.2E-07 46.8 1.9 46 90-136 35-86 (101)
2 1tc3_C Protein (TC3 transposas 94.8 0.018 6E-07 35.1 2.7 40 90-130 5-44 (51)
3 2p7v_B Sigma-70, RNA polymeras 93.6 0.045 1.5E-06 36.6 2.9 47 90-136 5-54 (68)
4 1tty_A Sigma-A, RNA polymerase 93.2 0.072 2.5E-06 37.5 3.6 47 90-136 18-67 (87)
5 2o8x_A Probable RNA polymerase 92.9 0.1 3.5E-06 34.4 3.7 46 90-136 15-60 (70)
6 1ku3_A Sigma factor SIGA; heli 92.9 0.093 3.2E-06 35.5 3.6 47 90-136 10-59 (73)
7 2w7n_A TRFB transcriptional re 92.6 0.12 4.1E-06 38.3 4.1 59 66-135 4-62 (101)
8 3frw_A Putative Trp repressor 92.5 0.19 6.4E-06 37.7 5.1 38 92-129 38-80 (107)
9 1fse_A GERE; helix-turn-helix 92.4 0.12 4E-06 34.5 3.6 46 89-136 10-55 (74)
10 2jpc_A SSRB; DNA binding prote 91.9 0.13 4.6E-06 33.1 3.2 33 104-136 10-42 (61)
11 3c57_A Two component transcrip 91.8 0.14 4.8E-06 36.7 3.6 45 90-136 27-71 (95)
12 2x48_A CAG38821; archeal virus 91.7 0.086 2.9E-06 33.5 2.1 36 93-129 18-53 (55)
13 1je8_A Nitrate/nitrite respons 91.6 0.12 4.3E-06 35.9 3.1 45 90-136 21-65 (82)
14 2fmy_A COOA, carbon monoxide o 91.5 0.17 5.7E-06 40.4 4.0 45 90-134 136-194 (220)
15 1jko_C HIN recombinase, DNA-in 91.3 0.05 1.7E-06 33.5 0.6 27 104-130 18-44 (52)
16 1o5l_A Transcriptional regulat 91.0 0.056 1.9E-06 43.2 0.8 58 90-147 140-205 (213)
17 3t72_q RNA polymerase sigma fa 91.0 0.19 6.5E-06 36.8 3.6 47 90-136 19-68 (99)
18 1p4w_A RCSB; solution structur 90.8 0.35 1.2E-05 35.2 4.9 61 72-136 18-78 (99)
19 1x3u_A Transcriptional regulat 90.8 0.16 5.6E-06 34.3 2.9 44 91-136 17-60 (79)
20 3ryp_A Catabolite gene activat 90.7 0.19 6.5E-06 39.5 3.7 45 90-134 137-194 (210)
21 3dv8_A Transcriptional regulat 90.6 0.19 6.4E-06 39.8 3.6 45 90-134 145-196 (220)
22 3hug_A RNA polymerase sigma fa 90.2 0.32 1.1E-05 34.3 4.1 47 90-137 37-83 (92)
23 2rnj_A Response regulator prot 90.2 0.18 6E-06 35.6 2.7 45 90-136 29-73 (91)
24 1ft9_A Carbon monoxide oxidati 90.1 0.31 1.1E-05 38.9 4.5 77 52-134 100-190 (222)
25 1pdn_C Protein (PRD paired); p 90.0 0.21 7E-06 36.2 3.1 44 89-133 16-59 (128)
26 3la7_A Global nitrogen regulat 89.6 0.36 1.2E-05 39.3 4.5 56 90-145 162-232 (243)
27 2oz6_A Virulence factor regula 89.5 0.25 8.7E-06 38.6 3.5 45 90-134 134-191 (207)
28 2glo_A Brinker CG9653-PA; prot 89.4 0.13 4.6E-06 33.4 1.5 41 90-131 5-49 (59)
29 1iuf_A Centromere ABP1 protein 89.4 0.25 8.7E-06 38.1 3.3 43 88-130 9-59 (144)
30 2jn6_A Protein CGL2762, transp 89.2 0.21 7.1E-06 35.5 2.5 42 90-131 5-47 (97)
31 1zyb_A Transcription regulator 89.2 0.31 1.1E-05 39.3 3.9 46 89-134 160-213 (232)
32 1k78_A Paired box protein PAX5 88.9 0.28 9.4E-06 37.3 3.2 44 89-133 31-74 (149)
33 3dkw_A DNR protein; CRP-FNR, H 88.8 0.54 1.8E-05 37.3 5.0 45 90-134 150-205 (227)
34 4ev0_A Transcription regulator 88.6 0.32 1.1E-05 38.3 3.5 45 90-134 139-190 (216)
35 3iwz_A CAP-like, catabolite ac 88.4 0.48 1.7E-05 37.6 4.4 45 90-134 157-214 (230)
36 1u78_A TC3 transposase, transp 88.3 0.27 9.2E-06 36.5 2.7 41 90-131 6-46 (141)
37 3fx3_A Cyclic nucleotide-bindi 88.2 0.5 1.7E-05 37.9 4.5 45 90-134 151-205 (237)
38 3e6c_C CPRK, cyclic nucleotide 88.1 0.52 1.8E-05 38.3 4.6 57 90-146 146-217 (250)
39 3kcc_A Catabolite gene activat 87.6 0.42 1.4E-05 39.4 3.7 45 90-134 187-244 (260)
40 2jrt_A Uncharacterized protein 87.5 0.5 1.7E-05 34.4 3.6 48 86-133 28-75 (95)
41 3ulq_B Transcriptional regulat 87.4 0.43 1.5E-05 34.0 3.2 46 89-136 28-73 (90)
42 1or7_A Sigma-24, RNA polymeras 86.9 0.54 1.8E-05 36.6 3.8 51 90-141 140-190 (194)
43 1u78_A TC3 transposase, transp 86.8 1.2 3.9E-05 33.0 5.5 73 58-130 25-102 (141)
44 1j1v_A Chromosomal replication 86.8 0.66 2.3E-05 33.5 3.9 49 87-135 26-75 (94)
45 2bgc_A PRFA; bacterial infecti 86.4 0.69 2.4E-05 37.3 4.4 45 90-134 137-197 (238)
46 3d0s_A Transcriptional regulat 86.2 0.39 1.3E-05 38.2 2.7 45 90-134 146-204 (227)
47 1hlv_A CENP-B, major centromer 86.0 0.5 1.7E-05 35.0 3.1 44 89-132 6-50 (131)
48 1s7o_A Hypothetical UPF0122 pr 86.0 0.55 1.9E-05 34.9 3.3 46 91-137 23-68 (113)
49 2elh_A CG11849-PA, LD40883P; s 85.4 0.47 1.6E-05 33.3 2.5 43 90-133 22-64 (87)
50 1rp3_A RNA polymerase sigma fa 85.4 0.73 2.5E-05 36.9 4.0 47 90-137 187-233 (239)
51 3e97_A Transcriptional regulat 85.4 0.55 1.9E-05 37.5 3.2 44 91-134 145-202 (231)
52 2jt1_A PEFI protein; solution 85.3 0.37 1.3E-05 33.7 1.8 50 67-133 1-50 (77)
53 2gau_A Transcriptional regulat 85.0 0.49 1.7E-05 37.8 2.7 45 90-134 150-207 (232)
54 2k27_A Paired box protein PAX- 84.6 0.53 1.8E-05 36.2 2.7 41 89-130 24-64 (159)
55 2lkp_A Transcriptional regulat 83.7 1.5 5.1E-05 31.9 4.7 60 65-133 12-71 (119)
56 1xsv_A Hypothetical UPF0122 pr 83.6 1 3.6E-05 33.2 3.8 46 91-137 26-71 (113)
57 3b02_A Transcriptional regulat 81.7 1.2 4.3E-05 34.5 3.8 45 90-134 109-166 (195)
58 2q1z_A RPOE, ECF SIGE; ECF sig 81.7 1.4 4.9E-05 33.9 4.1 46 90-136 135-180 (184)
59 1wy3_A Villin; structural prot 81.2 0.35 1.2E-05 29.0 0.2 24 57-80 2-25 (35)
60 2zcw_A TTHA1359, transcription 81.0 1.2 4E-05 34.8 3.4 45 90-134 116-173 (202)
61 3dn7_A Cyclic nucleotide bindi 80.6 0.47 1.6E-05 36.8 0.9 42 90-131 148-192 (194)
62 3szt_A QCSR, quorum-sensing co 80.5 1.5 5.1E-05 36.1 4.1 47 88-136 173-219 (237)
63 3pvv_A Chromosomal replication 80.3 1.8 6E-05 31.7 3.9 49 88-136 31-79 (101)
64 3kor_A Possible Trp repressor; 80.2 1 3.6E-05 34.2 2.7 30 100-129 68-97 (119)
65 1r1u_A CZRA, repressor protein 80.1 2.5 8.6E-05 30.2 4.7 59 67-134 8-66 (106)
66 1und_A Advillin, P92; actin bi 79.8 0.41 1.4E-05 29.1 0.2 23 57-79 4-26 (37)
67 3mzy_A RNA polymerase sigma-H 79.0 1.9 6.5E-05 32.1 3.9 46 91-138 110-155 (164)
68 2q0o_A Probable transcriptiona 78.6 3.4 0.00012 33.7 5.7 46 89-136 174-219 (236)
69 3qp6_A CVIR transcriptional re 77.5 3.5 0.00012 34.7 5.5 46 89-136 196-241 (265)
70 2p5k_A Arginine repressor; DNA 76.9 1.9 6.6E-05 27.6 3.0 36 94-129 4-46 (64)
71 2d1h_A ST1889, 109AA long hypo 75.9 1.7 5.9E-05 30.2 2.7 30 105-134 34-63 (109)
72 2rn7_A IS629 ORFA; helix, all 75.6 1 3.4E-05 32.4 1.4 43 90-132 6-55 (108)
73 3ech_A MEXR, multidrug resista 75.5 4.6 0.00016 29.6 5.2 29 106-134 50-78 (142)
74 1l0o_C Sigma factor; bergerat 75.0 0.6 2.1E-05 37.3 0.0 44 90-134 198-241 (243)
75 1l9z_H Sigma factor SIGA; heli 74.9 2.1 7.2E-05 39.2 3.6 47 90-136 375-424 (438)
76 2a6h_F RNA polymerase sigma fa 74.4 2.1 7.1E-05 38.8 3.5 47 90-136 360-409 (423)
77 2l0k_A Stage III sporulation p 73.9 1.5 5.3E-05 31.6 2.0 28 103-130 16-43 (93)
78 1sfx_A Conserved hypothetical 73.8 5.2 0.00018 27.6 4.8 30 105-134 32-61 (109)
79 1l3l_A Transcriptional activat 73.7 3.8 0.00013 33.3 4.6 46 89-136 172-217 (234)
80 2oa4_A SIR5; structure, struct 72.7 4.3 0.00015 29.8 4.2 42 93-134 36-77 (101)
81 1y0u_A Arsenical resistance op 72.7 2.1 7.2E-05 30.0 2.5 30 105-134 41-70 (96)
82 3cuo_A Uncharacterized HTH-typ 72.7 1.7 5.8E-05 30.1 1.9 28 107-134 38-65 (99)
83 3bja_A Transcriptional regulat 71.8 5.9 0.0002 28.6 4.9 29 106-134 46-74 (139)
84 3pqk_A Biofilm growth-associat 71.6 3.1 0.00011 29.3 3.2 39 96-134 25-63 (102)
85 1r1t_A Transcriptional repress 71.5 4.9 0.00017 29.7 4.4 60 66-134 27-86 (122)
86 2x4h_A Hypothetical protein SS 70.7 3.5 0.00012 30.4 3.4 41 94-134 15-58 (139)
87 1ku9_A Hypothetical protein MJ 70.6 2.5 8.6E-05 30.9 2.6 43 92-134 26-68 (152)
88 3clo_A Transcriptional regulat 70.5 2.7 9.2E-05 34.9 3.0 46 89-136 196-241 (258)
89 2frh_A SARA, staphylococcal ac 70.1 4.4 0.00015 29.7 3.8 44 91-134 35-80 (127)
90 3r0a_A Putative transcriptiona 68.5 2.7 9.3E-05 31.1 2.4 41 94-134 28-69 (123)
91 2heo_A Z-DNA binding protein 1 68.4 3.2 0.00011 27.6 2.5 28 107-134 25-52 (67)
92 2zkz_A Transcriptional repress 68.3 2 6.8E-05 30.5 1.5 41 94-134 27-68 (99)
93 1uxc_A FRUR (1-57), fructose r 67.9 1.3 4.5E-05 29.6 0.4 21 109-129 2-22 (65)
94 1zx4_A P1 PARB, plasmid partit 67.3 3.8 0.00013 33.4 3.2 29 102-130 19-47 (192)
95 2kko_A Possible transcriptiona 66.9 2.7 9.3E-05 30.3 2.0 30 105-134 36-65 (108)
96 3jth_A Transcription activator 66.6 2.2 7.4E-05 29.9 1.4 38 96-134 25-63 (98)
97 3iyd_F RNA polymerase sigma fa 66.4 3.5 0.00012 39.0 3.2 47 90-136 550-599 (613)
98 3f6o_A Probable transcriptiona 66.3 3.1 0.00011 30.4 2.3 39 96-134 20-58 (118)
99 1qzp_A Dematin; villin headpie 66.2 1.5 5.1E-05 30.1 0.4 24 57-80 35-58 (68)
100 3k0l_A Repressor protein; heli 65.9 10 0.00035 28.5 5.3 29 106-134 59-87 (162)
101 3kjx_A Transcriptional regulat 65.9 1.9 6.3E-05 36.7 1.1 31 108-138 11-52 (344)
102 2qvo_A Uncharacterized protein 65.8 4.3 0.00015 28.3 2.9 26 108-133 31-56 (95)
103 2pij_A Prophage PFL 6 CRO; tra 65.8 2.7 9.2E-05 27.1 1.7 27 102-129 9-35 (67)
104 1k78_A Paired box protein PAX5 65.7 11 0.00039 28.0 5.5 75 57-132 50-143 (149)
105 1a04_A Nitrate/nitrite respons 64.3 3.6 0.00012 32.1 2.5 44 91-136 155-198 (215)
106 1u2w_A CADC repressor, cadmium 64.0 3.5 0.00012 30.4 2.2 29 106-134 55-83 (122)
107 3g3z_A NMB1585, transcriptiona 64.0 9.3 0.00032 27.9 4.6 29 106-134 44-72 (145)
108 2gxg_A 146AA long hypothetical 63.9 8.1 0.00028 28.1 4.3 42 91-134 35-77 (146)
109 3boq_A Transcriptional regulat 63.7 10 0.00035 28.2 4.9 66 63-134 23-89 (160)
110 1on2_A Transcriptional regulat 63.6 6 0.0002 29.3 3.5 29 106-134 21-49 (142)
111 2jsc_A Transcriptional regulat 63.4 4.3 0.00015 29.7 2.6 30 105-134 32-61 (118)
112 2htj_A P fimbrial regulatory p 63.1 5.7 0.0002 26.9 3.0 28 107-134 14-41 (81)
113 2bv6_A MGRA, HTH-type transcri 63.0 8.6 0.00029 28.0 4.3 28 107-134 51-78 (142)
114 2oqg_A Possible transcriptiona 62.9 4.8 0.00016 28.5 2.7 31 104-134 31-61 (114)
115 3u2r_A Regulatory protein MARR 62.0 11 0.00039 28.4 4.9 44 91-134 44-89 (168)
116 4hbl_A Transcriptional regulat 61.7 9.7 0.00033 28.2 4.4 30 105-134 53-82 (149)
117 1qgp_A Protein (double strande 61.6 6.7 0.00023 26.8 3.2 41 94-134 16-58 (77)
118 2fbk_A Transcriptional regulat 61.4 13 0.00044 28.5 5.2 41 94-134 71-113 (181)
119 2pex_A Transcriptional regulat 61.3 7.8 0.00027 28.7 3.8 44 90-134 44-88 (153)
120 2l8n_A Transcriptional repress 60.7 1.4 4.8E-05 29.7 -0.5 22 108-129 10-31 (67)
121 1yu8_X Villin; alpha helix, 3- 59.8 1.7 5.7E-05 29.8 -0.3 24 57-80 34-57 (67)
122 1p6r_A Penicillinase repressor 59.3 5.6 0.00019 26.8 2.4 41 93-134 10-54 (82)
123 1q1h_A TFE, transcription fact 59.1 7.5 0.00026 27.6 3.2 30 105-134 31-60 (110)
124 2eth_A Transcriptional regulat 59.0 12 0.00041 27.7 4.5 28 107-134 58-85 (154)
125 3nrv_A Putative transcriptiona 59.0 16 0.00054 26.7 5.2 28 107-134 54-81 (148)
126 3eco_A MEPR; mutlidrug efflux 58.9 6 0.00021 28.7 2.7 28 107-134 47-74 (139)
127 2lfw_A PHYR sigma-like domain; 58.8 4.7 0.00016 30.6 2.2 47 90-137 93-139 (157)
128 1pdn_C Protein (PRD paired); p 58.5 7.1 0.00024 27.7 3.0 71 59-130 37-126 (128)
129 3mky_B Protein SOPB; partition 58.3 6.1 0.00021 32.2 2.8 58 88-150 21-81 (189)
130 3h5t_A Transcriptional regulat 58.2 3.6 0.00012 35.2 1.5 32 108-139 10-52 (366)
131 2rdp_A Putative transcriptiona 58.2 13 0.00043 27.2 4.5 43 91-134 40-83 (150)
132 4dyq_A Gene 1 protein; GP1, oc 58.2 5.3 0.00018 30.4 2.3 33 98-130 19-52 (140)
133 2nnn_A Probable transcriptiona 58.0 22 0.00077 25.3 5.8 44 90-134 35-79 (140)
134 3bro_A Transcriptional regulat 57.8 8.1 0.00028 28.0 3.3 44 91-134 32-77 (141)
135 2k6m_S Supervillin; SVHP, HP, 57.5 1.7 5.7E-05 29.8 -0.6 23 57-79 34-56 (67)
136 2cob_A LCOR protein; MLR2, KIA 57.4 7.7 0.00026 26.7 2.8 39 92-130 14-53 (70)
137 3oop_A LIN2960 protein; protei 57.2 7.7 0.00026 28.3 3.1 44 90-134 34-78 (143)
138 3kp7_A Transcriptional regulat 57.2 11 0.00037 27.8 4.0 31 104-134 48-78 (151)
139 1ub9_A Hypothetical protein PH 57.2 5 0.00017 27.5 1.9 39 96-134 18-57 (100)
140 3fm5_A Transcriptional regulat 56.5 6.9 0.00023 29.0 2.7 27 107-133 54-80 (150)
141 3c3w_A Two component transcrip 56.4 5.2 0.00018 31.8 2.1 44 90-135 149-192 (225)
142 1fx7_A Iron-dependent represso 56.4 8.1 0.00028 31.5 3.3 42 92-133 6-50 (230)
143 1okr_A MECI, methicillin resis 56.0 8.2 0.00028 27.6 3.0 40 94-134 12-55 (123)
144 3jw4_A Transcriptional regulat 56.0 12 0.00041 27.5 4.0 44 91-134 39-84 (148)
145 3bj6_A Transcriptional regulat 55.9 13 0.00044 27.3 4.2 29 106-134 53-81 (152)
146 2fbi_A Probable transcriptiona 55.9 9.2 0.00031 27.6 3.3 29 106-134 49-77 (142)
147 4b8x_A SCO5413, possible MARR- 55.8 11 0.00039 28.1 3.9 28 107-134 51-78 (147)
148 1qbj_A Protein (double-strande 55.5 8.2 0.00028 26.8 2.8 39 94-132 12-52 (81)
149 1oyi_A Double-stranded RNA-bin 55.5 6.7 0.00023 27.7 2.3 41 92-134 17-57 (82)
150 3f6v_A Possible transcriptiona 55.1 5.9 0.0002 30.6 2.1 41 94-134 58-98 (151)
151 2fbh_A Transcriptional regulat 55.0 7.6 0.00026 28.2 2.7 30 105-134 50-79 (146)
152 1lj9_A Transcriptional regulat 54.8 11 0.00036 27.5 3.5 28 107-134 43-70 (144)
153 4aik_A Transcriptional regulat 54.5 8.5 0.00029 29.1 3.0 44 91-134 29-73 (151)
154 3bpv_A Transcriptional regulat 54.2 11 0.00037 27.1 3.4 29 106-134 42-70 (138)
155 1yio_A Response regulatory pro 54.2 6 0.00021 30.6 2.1 44 91-136 143-186 (208)
156 1ujs_A Actin-binding LIM prote 54.2 2.3 7.9E-05 30.6 -0.3 25 57-81 49-73 (88)
157 1qpz_A PURA, protein (purine n 54.1 3.1 0.00011 35.1 0.4 22 109-130 2-23 (340)
158 1z91_A Organic hydroperoxide r 53.7 9.8 0.00034 27.8 3.2 29 106-134 53-81 (147)
159 1tbx_A ORF F-93, hypothetical 53.6 8.1 0.00028 26.8 2.5 28 107-134 22-53 (99)
160 3o9x_A Uncharacterized HTH-typ 53.6 10 0.00036 27.8 3.3 26 104-129 81-106 (133)
161 2l1s_A Uncharacterized protein 53.4 5.8 0.0002 28.1 1.7 25 191-215 21-47 (83)
162 2qww_A Transcriptional regulat 53.4 14 0.00047 27.2 4.0 29 106-134 54-82 (154)
163 3ctp_A Periplasmic binding pro 53.3 2.8 9.6E-05 35.3 0.0 22 109-130 4-25 (330)
164 2o20_A Catabolite control prot 52.8 2.9 9.9E-05 35.2 0.0 23 108-130 6-28 (332)
165 3bdd_A Regulatory protein MARR 52.7 12 0.00042 26.9 3.5 29 106-134 44-72 (142)
166 2hr3_A Probable transcriptiona 52.5 11 0.00038 27.4 3.3 30 105-134 48-77 (147)
167 3deu_A Transcriptional regulat 52.4 8.3 0.00028 29.4 2.6 45 90-134 50-95 (166)
168 2hsg_A Glucose-resistance amyl 52.4 3 0.0001 35.1 0.0 23 108-130 3-25 (332)
169 3hsr_A HTH-type transcriptiona 52.4 8.3 0.00028 28.2 2.5 42 91-134 34-77 (140)
170 3bil_A Probable LACI-family tr 52.0 3 0.0001 35.5 0.0 22 109-130 10-31 (348)
171 2pg4_A Uncharacterized protein 51.9 8.6 0.00029 26.6 2.4 28 107-134 30-58 (95)
172 1s3j_A YUSO protein; structura 51.7 15 0.00051 27.0 3.9 29 106-134 50-78 (155)
173 2a61_A Transcriptional regulat 51.6 13 0.00044 27.0 3.5 30 105-134 45-74 (145)
174 2fa5_A Transcriptional regulat 51.6 18 0.0006 26.9 4.4 30 105-134 61-90 (162)
175 3h5o_A Transcriptional regulat 51.5 3.1 0.00011 35.1 0.0 23 108-130 5-27 (339)
176 3f3x_A Transcriptional regulat 51.0 15 0.00051 26.8 3.8 26 109-134 52-77 (144)
177 1jye_A Lactose operon represso 50.9 3.2 0.00011 35.3 0.0 23 108-130 4-26 (349)
178 1jgs_A Multiple antibiotic res 50.8 14 0.00046 26.6 3.5 29 106-134 47-75 (138)
179 1xwr_A Regulatory protein CII; 50.6 9.5 0.00033 27.7 2.5 30 108-137 24-57 (97)
180 3dbi_A Sugar-binding transcrip 50.2 3.4 0.00011 34.8 0.0 22 109-130 5-26 (338)
181 3tgn_A ADC operon repressor AD 50.2 10 0.00035 27.6 2.8 44 90-134 35-78 (146)
182 2fu4_A Ferric uptake regulatio 49.9 11 0.00038 25.3 2.7 28 107-134 33-65 (83)
183 3cjn_A Transcriptional regulat 49.7 12 0.0004 27.9 3.1 29 106-134 65-93 (162)
184 3jvd_A Transcriptional regulat 49.6 3.5 0.00012 34.9 0.0 22 108-129 7-28 (333)
185 3uj3_X DNA-invertase; helix-tu 49.3 3.5 0.00012 32.6 0.0 28 103-130 154-181 (193)
186 3e3m_A Transcriptional regulat 49.1 3.6 0.00012 35.1 0.0 21 109-129 14-34 (355)
187 3f52_A CLP gene regulator (CLG 49.0 9.4 0.00032 27.3 2.3 38 92-129 24-63 (117)
188 3cdh_A Transcriptional regulat 48.7 17 0.00057 26.8 3.8 28 107-134 57-84 (155)
189 2h09_A Transcriptional regulat 48.4 15 0.0005 27.5 3.5 29 106-134 53-81 (155)
190 3e6m_A MARR family transcripti 48.3 17 0.00058 27.2 3.8 29 106-134 66-94 (161)
191 1zs4_A Regulatory protein CII; 46.9 16 0.00054 25.8 3.1 40 98-138 16-59 (83)
192 3s2w_A Transcriptional regulat 46.1 16 0.00055 27.2 3.3 29 106-134 63-91 (159)
193 2k27_A Paired box protein PAX- 45.8 13 0.00044 28.1 2.8 73 59-131 45-135 (159)
194 2qq9_A Diphtheria toxin repres 45.4 15 0.00053 29.8 3.3 41 92-132 6-49 (226)
195 3fmy_A HTH-type transcriptiona 45.3 7.1 0.00024 25.8 1.1 26 104-129 21-46 (73)
196 1r71_A Transcriptional repress 45.2 11 0.00039 30.1 2.4 40 90-129 35-74 (178)
197 3klo_A Transcriptional regulat 44.9 7.1 0.00024 30.8 1.2 42 91-134 160-201 (225)
198 1mkm_A ICLR transcriptional re 44.3 13 0.00043 30.6 2.7 40 95-134 8-50 (249)
199 3hot_A Transposable element ma 44.0 28 0.00094 29.3 4.9 62 67-130 41-109 (345)
200 3fzv_A Probable transcriptiona 43.7 17 0.00059 29.2 3.4 40 96-136 8-47 (306)
201 2l1p_A DNA-binding protein SAT 43.3 9.3 0.00032 27.1 1.4 36 90-129 19-54 (83)
202 2xi8_A Putative transcription 43.3 5.6 0.00019 24.9 0.3 25 105-129 12-36 (66)
203 2nyx_A Probable transcriptiona 43.0 18 0.00061 27.4 3.2 43 91-134 43-86 (168)
204 2g7u_A Transcriptional regulat 42.8 16 0.00055 30.2 3.1 46 89-134 8-56 (257)
205 3nqo_A MARR-family transcripti 42.2 17 0.00057 28.3 3.0 29 106-134 56-84 (189)
206 2xrn_A HTH-type transcriptiona 41.7 13 0.00044 30.5 2.3 42 93-134 4-48 (241)
207 2g9w_A Conserved hypothetical 41.2 14 0.00048 27.4 2.3 42 93-134 10-55 (138)
208 2fxa_A Protease production reg 40.9 31 0.001 27.4 4.4 43 91-134 46-89 (207)
209 2cw1_A SN4M; lambda CRO fold, 40.7 11 0.00039 25.0 1.5 21 108-128 14-34 (65)
210 3bd1_A CRO protein; transcript 40.5 7.5 0.00026 25.8 0.6 24 106-130 11-34 (79)
211 2w48_A Sorbitol operon regulat 40.0 17 0.00058 31.0 2.9 29 103-131 17-45 (315)
212 1vz0_A PARB, chromosome partit 39.6 18 0.0006 29.9 2.8 88 43-136 74-169 (230)
213 1zug_A Phage 434 CRO protein; 39.2 7.1 0.00024 24.8 0.3 25 105-129 14-38 (71)
214 2fe3_A Peroxide operon regulat 39.1 38 0.0013 25.4 4.5 26 109-134 39-69 (145)
215 1v4r_A Transcriptional repress 39.0 7.2 0.00025 27.5 0.3 23 109-131 37-59 (102)
216 3eus_A DNA-binding protein; st 38.7 20 0.00067 24.2 2.5 33 97-129 15-49 (86)
217 1ais_B TFB TFIIB, protein (tra 38.7 49 0.0017 25.9 5.3 84 45-136 11-98 (200)
218 4ghj_A Probable transcriptiona 38.7 18 0.00062 25.9 2.4 36 92-127 32-69 (101)
219 3mq0_A Transcriptional repress 38.5 23 0.00079 29.7 3.5 48 87-134 22-72 (275)
220 1j5y_A Transcriptional regulat 38.3 23 0.00079 27.8 3.2 43 92-134 18-63 (187)
221 3cta_A Riboflavin kinase; stru 38.1 14 0.00048 29.9 2.0 26 108-133 28-53 (230)
222 2b5a_A C.BCLI; helix-turn-heli 37.7 19 0.00064 23.2 2.2 26 104-129 20-45 (77)
223 3u1d_A Uncharacterized protein 37.5 23 0.00078 27.7 3.0 41 94-134 29-73 (151)
224 2cyy_A Putative HTH-type trans 37.4 29 0.00099 25.9 3.6 28 107-134 21-48 (151)
225 1r69_A Repressor protein CI; g 37.0 10 0.00034 23.9 0.7 26 104-129 11-36 (69)
226 1l8q_A Chromosomal replication 36.7 34 0.0012 28.6 4.3 46 88-133 254-300 (324)
227 4fx0_A Probable transcriptiona 36.7 31 0.0011 25.7 3.6 26 108-133 53-78 (148)
228 2r1j_L Repressor protein C2; p 36.6 7.8 0.00027 24.3 0.1 25 105-129 16-40 (68)
229 1sd4_A Penicillinase repressor 36.5 20 0.00068 25.6 2.4 41 93-134 11-55 (126)
230 2dk5_A DNA-directed RNA polyme 36.4 20 0.00069 25.3 2.3 54 90-149 17-73 (91)
231 2w25_A Probable transcriptiona 36.4 25 0.00085 26.2 3.0 28 107-134 21-48 (150)
232 2ia2_A Putative transcriptiona 36.4 19 0.00065 29.9 2.6 45 90-134 16-63 (265)
233 1i1g_A Transcriptional regulat 36.3 25 0.00087 25.7 3.0 28 107-134 18-45 (141)
234 3vp5_A Transcriptional regulat 36.2 8.6 0.00029 29.3 0.3 26 105-130 30-55 (189)
235 2ijl_A AGR_C_4647P, molybdenum 35.2 22 0.00075 27.0 2.5 40 96-136 28-67 (135)
236 3s8q_A R-M controller protein; 35.2 23 0.0008 23.2 2.4 26 104-129 21-46 (82)
237 1ixc_A CBNR, LYSR-type regulat 35.2 26 0.00087 28.0 3.1 37 96-133 5-41 (294)
238 2wiu_B HTH-type transcriptiona 35.1 11 0.00038 25.1 0.8 25 105-129 23-47 (88)
239 2hzt_A Putative HTH-type trans 35.0 21 0.00073 25.2 2.3 34 101-134 20-55 (107)
240 2dbb_A Putative HTH-type trans 35.0 34 0.0012 25.5 3.6 28 107-134 23-50 (151)
241 3kz3_A Repressor protein CI; f 35.0 9 0.00031 25.4 0.2 25 105-129 23-47 (80)
242 3df8_A Possible HXLR family tr 34.8 23 0.0008 25.4 2.5 35 100-134 32-70 (111)
243 2ao9_A Phage protein; structur 34.6 38 0.0013 26.5 3.9 23 107-129 48-70 (155)
244 3oou_A LIN2118 protein; protei 34.4 30 0.001 24.2 3.0 27 105-131 19-45 (108)
245 3omt_A Uncharacterized protein 34.2 9.4 0.00032 24.7 0.2 26 105-130 19-44 (73)
246 1y7y_A C.AHDI; helix-turn-heli 34.2 10 0.00036 24.2 0.5 25 105-129 24-48 (74)
247 3b7h_A Prophage LP1 protein 11 34.0 10 0.00036 24.5 0.5 25 105-129 18-42 (78)
248 1lmb_3 Protein (lambda repress 33.9 21 0.00071 24.0 2.0 35 95-129 16-52 (92)
249 2cfx_A HTH-type transcriptiona 33.9 33 0.0011 25.5 3.3 28 107-134 19-46 (144)
250 2a6c_A Helix-turn-helix motif; 33.6 15 0.00052 24.6 1.2 26 104-129 28-53 (83)
251 2cg4_A Regulatory protein ASNC 33.6 35 0.0012 25.4 3.5 28 107-134 22-49 (152)
252 2ovg_A Phage lambda CRO; trans 33.4 9.7 0.00033 25.4 0.2 21 109-129 15-35 (66)
253 3hrs_A Metalloregulator SCAR; 33.3 20 0.00068 28.9 2.1 39 94-132 4-45 (214)
254 2o0y_A Transcriptional regulat 33.2 21 0.0007 29.6 2.3 45 90-134 18-65 (260)
255 2ewt_A BLDD, putative DNA-bind 33.1 33 0.0011 21.6 2.9 25 105-129 19-45 (71)
256 1gdt_A GD resolvase, protein ( 33.1 11 0.00038 29.4 0.5 30 99-129 151-180 (183)
257 2r0q_C Putative transposon TN5 32.7 18 0.00061 28.8 1.7 26 105-130 173-198 (209)
258 1adr_A P22 C2 repressor; trans 32.5 9.4 0.00032 24.6 -0.0 25 105-129 16-40 (76)
259 3k2z_A LEXA repressor; winged 32.3 34 0.0012 26.9 3.4 27 107-133 24-50 (196)
260 2qlz_A Transcription factor PF 32.3 23 0.00079 29.3 2.4 30 105-134 23-52 (232)
261 3mn2_A Probable ARAC family tr 32.1 32 0.0011 24.0 2.9 26 106-131 17-42 (108)
262 3bs3_A Putative DNA-binding pr 32.1 11 0.00037 24.3 0.3 25 105-129 21-45 (76)
263 1p2f_A Response regulator; DRR 32.0 22 0.00075 27.5 2.1 44 91-136 146-196 (220)
264 1neq_A DNA-binding protein NER 31.8 20 0.00068 24.1 1.6 25 105-129 20-44 (74)
265 2hku_A A putative transcriptio 31.7 23 0.00078 27.1 2.2 33 96-129 29-61 (215)
266 2p5v_A Transcriptional regulat 31.7 27 0.00093 26.4 2.6 28 107-134 24-51 (162)
267 4hku_A LMO2814 protein, TETR t 31.5 24 0.00083 26.4 2.3 32 98-129 18-49 (178)
268 3iwf_A Transcription regulator 31.5 36 0.0012 24.6 3.1 38 92-131 17-59 (107)
269 2obp_A Putative DNA-binding pr 31.1 38 0.0013 24.3 3.1 42 93-134 17-63 (96)
270 1z7u_A Hypothetical protein EF 30.9 39 0.0013 24.0 3.2 29 106-134 34-63 (112)
271 3hot_A Transposable element ma 30.8 28 0.00097 29.3 2.8 40 93-132 8-54 (345)
272 2pn6_A ST1022, 150AA long hypo 30.7 28 0.00095 25.9 2.5 28 107-134 17-44 (150)
273 3hhg_A Transcriptional regulat 30.6 37 0.0013 27.2 3.4 38 97-135 8-45 (306)
274 2k9q_A Uncharacterized protein 30.6 11 0.00039 24.6 0.2 26 104-129 12-37 (77)
275 1b4a_A Arginine repressor; hel 30.5 23 0.0008 27.4 2.0 22 110-131 22-48 (149)
276 1p4x_A Staphylococcal accessor 30.3 54 0.0018 27.2 4.4 44 91-134 156-201 (250)
277 2hqr_A Putative transcriptiona 29.6 32 0.0011 26.6 2.7 44 91-136 144-196 (223)
278 2ict_A Antitoxin HIGA; helix-t 29.3 15 0.00052 25.0 0.7 38 91-130 7-44 (94)
279 1rzs_A Antirepressor, regulato 29.3 9.1 0.00031 24.7 -0.5 21 108-128 11-31 (61)
280 1hsj_A Fusion protein consisti 29.3 17 0.00057 32.4 1.1 44 90-133 401-446 (487)
281 2ofy_A Putative XRE-family tra 29.2 33 0.0011 22.6 2.4 34 96-129 16-49 (86)
282 3on4_A Transcriptional regulat 29.2 22 0.00075 26.2 1.6 33 97-129 20-52 (191)
283 2esn_A Probable transcriptiona 29.1 33 0.0011 27.7 2.8 35 97-132 15-49 (310)
284 1ui5_A A-factor receptor homol 28.7 30 0.001 26.7 2.4 39 98-136 20-61 (215)
285 1c9b_A General transcription f 28.7 21 0.00072 28.3 1.5 42 103-144 155-196 (207)
286 2b0l_A GTP-sensing transcripti 28.7 19 0.00065 25.8 1.1 24 109-132 45-68 (102)
287 1ys7_A Transcriptional regulat 28.5 34 0.0012 26.5 2.7 44 91-136 160-212 (233)
288 3plo_X DNA-invertase; resolvas 28.5 12 0.00041 29.5 0.0 31 104-134 155-185 (193)
289 2kpj_A SOS-response transcript 28.4 14 0.00047 25.4 0.3 25 105-129 20-44 (94)
290 3f6w_A XRE-family like protein 28.4 13 0.00045 24.5 0.2 26 104-129 24-49 (83)
291 3p7n_A Sensor histidine kinase 28.2 37 0.0013 26.8 3.0 37 99-135 205-241 (258)
292 2k4b_A Transcriptional regulat 28.2 25 0.00085 25.1 1.7 41 93-134 36-80 (99)
293 1p4x_A Staphylococcal accessor 28.0 38 0.0013 28.1 3.0 71 57-134 5-77 (250)
294 1xn7_A Hypothetical protein YH 27.9 20 0.00067 24.7 1.0 26 108-133 17-42 (78)
295 1uly_A Hypothetical protein PH 27.8 30 0.001 27.5 2.3 29 106-134 32-60 (192)
296 3qq6_A HTH-type transcriptiona 27.8 24 0.00081 23.4 1.4 29 102-130 18-46 (78)
297 2k9s_A Arabinose operon regula 27.8 38 0.0013 23.6 2.6 25 107-131 20-44 (107)
298 1bia_A BIRA bifunctional prote 27.6 30 0.001 29.7 2.4 34 101-134 11-46 (321)
299 3dew_A Transcriptional regulat 27.5 32 0.0011 25.5 2.3 33 99-131 20-52 (206)
300 2o3f_A Putative HTH-type trans 27.5 30 0.001 25.1 2.0 38 92-131 21-63 (111)
301 2ppx_A AGR_C_3184P, uncharacte 27.4 16 0.00054 25.4 0.5 26 104-129 40-65 (99)
302 2zcm_A Biofilm operon icaabcd 27.4 27 0.00092 26.1 1.9 31 99-129 19-49 (192)
303 2gqq_A Leucine-responsive regu 27.2 57 0.0019 24.7 3.8 31 104-134 24-54 (163)
304 3bhq_A Transcriptional regulat 27.2 29 0.001 26.5 2.1 32 98-129 23-54 (211)
305 3g5g_A Regulatory protein; tra 27.2 37 0.0013 23.7 2.4 35 95-129 27-63 (99)
306 3fxq_A LYSR type regulator of 27.0 44 0.0015 27.0 3.2 38 96-134 6-43 (305)
307 2i10_A Putative TETR transcrip 26.8 33 0.0011 26.1 2.4 34 96-129 20-53 (202)
308 2fd5_A Transcriptional regulat 26.8 37 0.0013 25.0 2.5 31 99-129 19-49 (180)
309 2wte_A CSA3; antiviral protein 26.7 49 0.0017 27.4 3.5 29 106-134 165-193 (244)
310 4ham_A LMO2241 protein; struct 26.4 38 0.0013 25.0 2.5 22 109-130 40-61 (134)
311 2ef8_A C.ECOT38IS, putative tr 26.4 17 0.00058 23.8 0.5 25 105-129 21-45 (84)
312 3bqz_B HTH-type transcriptiona 26.4 33 0.0011 25.4 2.2 30 100-129 15-44 (194)
313 2ek5_A Predicted transcription 26.3 38 0.0013 25.1 2.5 22 109-130 30-51 (129)
314 3cec_A Putative antidote prote 26.3 15 0.00051 25.6 0.1 37 91-129 17-53 (104)
315 4g6q_A Putative uncharacterize 26.3 35 0.0012 26.8 2.4 38 96-134 25-64 (182)
316 3b73_A PHIH1 repressor-like pr 26.2 51 0.0018 24.1 3.1 28 107-134 27-56 (111)
317 3loc_A HTH-type transcriptiona 25.8 24 0.00081 26.6 1.3 33 97-129 28-60 (212)
318 3lsg_A Two-component response 25.8 55 0.0019 22.5 3.2 25 107-131 19-43 (103)
319 2p4w_A Transcriptional regulat 25.7 31 0.0011 27.8 2.0 30 105-134 26-55 (202)
320 2nx4_A Transcriptional regulat 25.6 28 0.00095 26.3 1.6 33 97-129 20-52 (194)
321 2xdn_A HTH-type transcriptiona 25.4 34 0.0012 26.0 2.1 31 99-129 23-53 (210)
322 2hyt_A TETR-family transcripti 25.3 44 0.0015 25.2 2.8 31 99-129 24-54 (197)
323 2l49_A C protein; P2 bacteriop 24.9 19 0.00064 24.6 0.5 26 104-129 14-39 (99)
324 2fq4_A Transcriptional regulat 24.9 35 0.0012 25.6 2.1 31 100-130 25-55 (192)
325 4aci_A HTH-type transcriptiona 24.8 31 0.0011 25.6 1.8 32 99-130 26-57 (191)
326 3vk0_A NHTF, transcriptional r 24.7 42 0.0014 23.7 2.4 36 93-128 18-55 (114)
327 3vpr_A Transcriptional regulat 24.6 35 0.0012 25.4 2.1 30 100-129 16-45 (190)
328 1sgm_A Putative HTH-type trans 24.6 42 0.0014 24.6 2.5 26 105-130 24-49 (191)
329 3aqt_A Bacterial regulatory pr 24.5 38 0.0013 26.7 2.3 24 106-129 65-88 (245)
330 2eby_A Putative HTH-type trans 24.3 19 0.00066 25.4 0.4 26 104-129 21-46 (113)
331 2f2e_A PA1607; transcription f 24.3 45 0.0015 25.0 2.6 34 101-134 30-64 (146)
332 2oqr_A Sensory transduction pr 24.1 31 0.0011 26.8 1.7 44 91-136 157-209 (230)
333 3trb_A Virulence-associated pr 24.1 18 0.00061 25.9 0.2 39 90-129 11-49 (104)
334 3c2b_A Transcriptional regulat 24.1 39 0.0013 25.7 2.3 33 99-131 27-59 (221)
335 3lwj_A Putative TETR-family tr 24.1 32 0.0011 25.7 1.7 26 105-130 30-55 (202)
336 2g7s_A Transcriptional regulat 24.0 31 0.0011 25.4 1.6 31 100-130 21-51 (194)
337 3lhq_A Acrab operon repressor 24.0 31 0.001 25.9 1.6 26 105-130 32-57 (220)
338 1al3_A Cys regulon transcripti 24.0 16 0.00056 30.1 0.0 40 97-136 6-45 (324)
339 3kxa_A NGO0477 protein, putati 23.9 23 0.0008 26.6 0.9 26 104-129 78-103 (141)
340 2d6y_A Putative TETR family re 23.8 42 0.0015 25.5 2.4 32 98-129 19-50 (202)
341 3bdn_A Lambda repressor; repre 23.7 32 0.0011 27.4 1.8 34 97-130 18-53 (236)
342 3crj_A Transcription regulator 23.7 29 0.00098 26.4 1.4 31 99-129 26-56 (199)
343 2qko_A Possible transcriptiona 23.7 44 0.0015 25.4 2.5 26 106-131 47-72 (215)
344 3knw_A Putative transcriptiona 23.4 32 0.0011 25.9 1.6 30 100-129 27-56 (212)
345 2gen_A Probable transcriptiona 23.3 35 0.0012 25.8 1.9 33 97-129 17-49 (197)
346 2jj7_A Hemolysin II regulatory 23.2 39 0.0013 24.9 2.0 40 99-138 19-58 (186)
347 3him_A Probable transcriptiona 23.1 35 0.0012 25.4 1.8 24 106-129 35-58 (211)
348 3tqn_A Transcriptional regulat 23.1 28 0.00095 25.0 1.1 24 109-132 35-58 (113)
349 3nrg_A TETR family transcripti 23.1 35 0.0012 25.7 1.8 31 99-129 25-55 (217)
350 2zb9_A Putative transcriptiona 22.9 33 0.0011 26.1 1.6 26 105-130 41-66 (214)
351 3vib_A MTRR; helix-turn-helix 22.8 34 0.0012 26.0 1.6 32 98-129 21-52 (210)
352 2e1c_A Putative HTH-type trans 22.8 58 0.002 25.1 3.0 28 107-134 41-68 (171)
353 3ic7_A Putative transcriptiona 22.8 37 0.0013 24.9 1.8 23 109-131 37-59 (126)
354 1b0n_A Protein (SINR protein); 22.7 22 0.00074 24.7 0.5 27 104-130 11-37 (111)
355 2dg8_A Putative TETR-family tr 22.6 38 0.0013 25.3 1.9 26 105-130 27-52 (193)
356 2v79_A DNA replication protein 22.5 81 0.0028 23.6 3.7 27 108-134 52-78 (135)
357 1u8b_A ADA polyprotein; protei 22.4 56 0.0019 23.7 2.8 41 92-132 76-118 (133)
358 2wui_A MEXZ, transcriptional r 22.4 29 0.00099 26.5 1.2 38 99-136 23-63 (210)
359 2k02_A Ferrous iron transport 22.4 24 0.0008 25.0 0.6 23 108-130 17-39 (87)
360 3cdl_A Transcriptional regulat 22.4 31 0.0011 26.2 1.4 32 98-129 20-51 (203)
361 2gwr_A DNA-binding response re 22.4 50 0.0017 25.9 2.6 44 91-136 154-206 (238)
362 1t33_A Putative transcriptiona 22.3 48 0.0017 25.2 2.5 31 99-130 24-54 (224)
363 3dpj_A Transcription regulator 22.3 36 0.0012 25.3 1.7 26 105-130 26-51 (194)
364 3pas_A TETR family transcripti 22.2 30 0.001 25.4 1.2 32 99-130 20-51 (195)
365 3lsj_A DEST; transcriptional r 22.2 33 0.0011 26.1 1.5 25 106-130 31-55 (220)
366 3op9_A PLI0006 protein; struct 22.1 23 0.00079 25.0 0.5 26 104-129 19-44 (114)
367 1pb6_A Hypothetical transcript 22.1 39 0.0013 25.3 1.9 25 106-130 37-61 (212)
368 3ljl_A Transcriptional regulat 22.1 27 0.00091 25.6 0.9 32 105-136 32-66 (156)
369 3t76_A VANU, transcriptional r 22.0 22 0.00077 24.7 0.4 26 104-129 34-59 (88)
370 3b81_A Transcriptional regulat 22.0 30 0.001 25.8 1.2 31 99-129 23-53 (203)
371 3f1b_A TETR-like transcription 21.9 38 0.0013 25.2 1.7 25 106-130 33-57 (203)
372 3rh2_A Hypothetical TETR-like 21.8 36 0.0012 25.8 1.6 32 99-130 15-46 (212)
373 1c9b_A General transcription f 21.8 2.5E+02 0.0084 21.8 6.7 84 45-136 7-94 (207)
374 1yyv_A Putative transcriptiona 21.8 58 0.002 24.0 2.7 35 100-134 40-76 (131)
375 3gzi_A Transcriptional regulat 21.6 34 0.0012 25.9 1.4 24 106-129 36-59 (218)
376 3cwr_A Transcriptional regulat 21.6 39 0.0013 25.1 1.7 31 100-130 30-60 (208)
377 3qkx_A Uncharacterized HTH-typ 21.5 32 0.0011 25.2 1.2 25 106-130 27-51 (188)
378 2v57_A TETR family transcripti 21.5 22 0.00077 26.4 0.3 24 106-129 31-54 (190)
379 2qtq_A Transcriptional regulat 21.5 49 0.0017 24.7 2.3 30 100-129 29-58 (213)
380 2o38_A Hypothetical protein; a 21.5 51 0.0017 24.1 2.3 26 104-129 50-75 (120)
381 2ia0_A Putative HTH-type trans 21.4 63 0.0021 24.9 3.0 28 107-134 31-58 (171)
382 3oio_A Transcriptional regulat 21.4 38 0.0013 23.8 1.6 24 108-131 24-47 (113)
383 2o0m_A Transcriptional regulat 21.3 20 0.00068 31.0 0.0 36 97-133 25-60 (345)
384 3r4k_A Transcriptional regulat 21.3 33 0.0011 28.3 1.4 42 93-134 4-48 (260)
385 3col_A Putative transcription 21.3 32 0.0011 25.3 1.2 32 99-130 22-53 (196)
386 3neu_A LIN1836 protein; struct 21.2 32 0.0011 25.2 1.1 24 109-132 39-62 (125)
387 2id6_A Transcriptional regulat 21.2 44 0.0015 25.2 2.0 32 98-129 16-47 (202)
388 1bl0_A Protein (multiple antib 21.2 55 0.0019 23.7 2.5 25 107-131 27-51 (129)
389 3egq_A TETR family transcripti 21.1 20 0.00067 26.3 -0.1 25 106-130 23-47 (170)
390 1ic8_A Hepatocyte nuclear fact 21.0 33 0.0011 27.8 1.3 26 104-129 40-65 (194)
391 2vn2_A DNAD, chromosome replic 20.9 75 0.0026 23.3 3.2 27 108-134 52-78 (128)
392 2p5t_A Putative transcriptiona 20.9 21 0.00071 27.1 0.0 25 105-129 12-36 (158)
393 2fsw_A PG_0823 protein; alpha- 20.8 50 0.0017 23.1 2.1 34 101-134 31-66 (107)
394 2iu5_A DHAS, YCEG, HTH-type dh 20.8 41 0.0014 25.2 1.7 31 106-136 32-65 (195)
395 2dg7_A Putative transcriptiona 20.8 33 0.0011 25.6 1.2 25 106-130 26-50 (195)
396 2w53_A Repressor, SMet; antibi 20.7 33 0.0011 26.2 1.2 33 97-129 21-53 (219)
397 3f0c_A TETR-molecule A, transc 20.7 39 0.0013 25.5 1.6 32 98-129 22-53 (216)
398 2hyj_A Putative TETR-family tr 20.7 32 0.0011 26.1 1.1 31 99-129 24-54 (200)
399 1x57_A Endothelial differentia 20.7 45 0.0015 22.3 1.8 26 104-129 23-48 (91)
400 3isp_A HTH-type transcriptiona 20.7 56 0.0019 26.2 2.7 32 104-135 17-48 (303)
401 2gfn_A HTH-type transcriptiona 20.5 42 0.0014 25.7 1.8 32 98-129 20-51 (209)
402 2np5_A Transcriptional regulat 20.5 39 0.0013 25.7 1.6 31 99-129 21-51 (203)
403 3qbm_A TETR transcriptional re 20.5 34 0.0012 25.3 1.2 30 100-129 20-49 (199)
404 3ivp_A Putative transposon-rel 20.4 29 0.001 24.9 0.8 26 104-129 22-47 (126)
405 2rek_A Putative TETR-family tr 20.3 45 0.0015 25.0 1.9 23 107-129 35-57 (199)
406 3frq_A Repressor protein MPHR( 20.3 42 0.0014 25.0 1.7 32 99-130 20-51 (195)
407 2id3_A Putative transcriptiona 20.2 48 0.0016 25.7 2.1 40 105-144 58-101 (225)
408 3ppb_A Putative TETR family tr 20.1 37 0.0013 25.0 1.3 25 106-130 28-52 (195)
409 3on2_A Probable transcriptiona 20.0 33 0.0011 25.3 1.0 31 100-130 25-55 (199)
No 1
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=95.81 E-value=0.0034 Score=46.80 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHH-----HhcC-ccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFT-----ISHN-LRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~-----la~~-~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
-+++.|+-+|.+++ |..| .+||.|+...|+|.+||||+ ...++-+.
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 36788887777764 2356 99999999999999999999 66665543
No 2
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=94.85 E-value=0.018 Score=35.06 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.++.+++..+.+. +..|.+++.++..+++|.+||.+++++
T Consensus 5 ~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 4567777555554 467899999999999999999998763
No 3
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.63 E-value=0.045 Score=36.59 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHHHH---hcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTI---SHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~l---a~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..++-.+.|++. ..|.++..|+..+++|.+||..+.+..+..+-
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 468888888888873 58999999999999999999999998887765
No 4
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=93.24 E-value=0.072 Score=37.50 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHH-Hh--cCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFT-IS--HNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~-la--~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..++-.+.|++ ++ .|.|+..|+...++|.+||..+.+..+..+-
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46888998888887 45 7899999999999999999999998888765
No 5
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=92.87 E-value=0.1 Score=34.39 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..++-.+.|++ ..|.++..++..+++|.+||.+..+.....+-
T Consensus 15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46777776665554 67899999999999999999999999888876
No 6
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.86 E-value=0.093 Score=35.47 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHH-h--cCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTI-S--HNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~l-a--~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..++-.+.|++. . .|.++..|+...++|.+||.++.+..+..+-
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 578888888888774 3 7899999999999999999999999888876
No 7
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=92.60 E-value=0.12 Score=38.29 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHH
Q 046385 66 RMDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAM 135 (218)
Q Consensus 66 RM~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI 135 (218)
||+.+.|..+...|+ ++- ..+-+.-.++-.|.++..|+..+|+|+.||||.+.++-+..
T Consensus 4 rmT~~eFe~~~~~l~----------~~~-~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~ 62 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE----------VGQ-QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHTTCC----------CCH-HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC----------hHH-HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 799999999985551 211 22445555677889999999999999999999999987764
No 8
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=92.53 E-value=0.19 Score=37.68 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=29.2
Q ss_pred hHHHHHHHHH-----HHHhcCccchhhhhcccccccchhHHHH
Q 046385 92 TVEEKMAMFL-----FTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 92 sveE~laifL-----~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
++.|.-+|.- ..|..|.+|+.|+...|.|.+||+|+-+
T Consensus 38 T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 38 TINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 4444444443 3488999999999999999999999644
No 9
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.42 E-value=0.12 Score=34.48 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
..++..|+-.+.+ +..|.++..++..+++|.+||+++++.....+-
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3577777755555 388999999999999999999999999887764
No 10
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=91.85 E-value=0.13 Score=33.08 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=30.2
Q ss_pred HhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
++.|.+++.++...++|.+||+.+++.+.+.+-
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 689999999999999999999999999887754
No 11
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.78 E-value=0.14 Score=36.65 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=39.4
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..|+-.+.|+ ..|.+++.|+...++|..||..+++.+...+-
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5788888777774 89999999999999999999999998887764
No 12
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=91.67 E-value=0.086 Score=33.50 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 93 VEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 93 veE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+..-.+... ...|.+++.++..+++|.+||+++++
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4444444444 57889999999999999999999875
No 13
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=91.64 E-value=0.12 Score=35.92 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.++..|+-.+.|+ ..|.++..|+..+++|.+||..+++...+.+-
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5788887776663 79999999999999999999999998887754
No 14
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=91.46 E-value=0.17 Score=40.38 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHHHHhc--------------CccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISH--------------NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~--------------~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.-++++|++-+|..++. ..+..+++...|.|++||||.+++.-+.
T Consensus 136 ~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 136 FKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45899999999988764 3467899999999999999999987554
No 15
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=91.29 E-value=0.05 Score=33.46 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.7
Q ss_pred HhcCccchhhhhcccccccchhHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+..|.+.+.++..+++|.+||++++++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 567789999999999999999998753
No 16
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=90.99 E-value=0.056 Score=43.23 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=1.0
Q ss_pred cchHHHHHHHHHHHHhc-------CccchhhhhcccccccchhHHHHHHHHH-HHhhhhhhcCCCC
Q 046385 90 HLTVEEKMAMFLFTISH-------NLRNRFIKIRFQHSGHTVHRYFHEVLSA-MMKFSKEMITPPS 147 (218)
Q Consensus 90 ~isveE~laifL~~la~-------~~s~r~i~~~F~~S~sTVsr~f~eVl~A-I~~L~~~~Ik~P~ 147 (218)
..++++|++-+|..++. ..+..+++...|+|.+||||.+++.-+. ++......|..++
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d 205 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLK 205 (213)
T ss_dssp CC----------------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEec
Confidence 45789999999988763 3467899999999999999999987655 4555555555544
No 17
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=90.99 E-value=0.19 Score=36.79 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHHHH---hcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTI---SHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~l---a~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..+|..+.|++. ..+.++..|+..+++|.+||..+.+..+..+-
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478899999999885 37899999999999999999999999888876
No 18
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=90.83 E-value=0.35 Score=35.18 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 72 FISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 72 F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
...+++.|.... .....+|..|+-.+.| ++.|.++..|+...++|.+||..++..+++.+-
T Consensus 18 ~~~~l~~l~~~~--~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 18 VAKLLEKISAGG--YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHCCC--CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHccCC--cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 344555565432 2245788888866555 468999999999999999999999998877654
No 19
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=90.77 E-value=0.16 Score=34.30 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
+|..|+-.+.|+ ..|.++..++..+++|.+||..+++.....+-
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 566776666663 79999999999999999999999998887654
No 20
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=90.73 E-value=0.19 Score=39.46 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHHhcC-------------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++|++-+|..++.. .+..++++..|.|.+||||.+++.-+.
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 458999999999988753 355799999999999999999887654
No 21
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=90.61 E-value=0.19 Score=39.80 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHHHHhc-------CccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISH-------NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~-------~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++|++-+|..++. ..+..+++...|+|++||||.+++.-+.
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999998876 5677899999999999999999987655
No 22
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=90.22 E-value=0.32 Score=34.27 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHh
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMK 137 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~ 137 (218)
.++..++-.+.|++ ..|.+++.|+...++|.+||.+.++..+..+-.
T Consensus 37 ~L~~~~r~vl~l~~-~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSY-YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36777777666655 578999999999999999999999999888764
No 23
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=90.21 E-value=0.18 Score=35.63 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..|+-.+.|+ ..|.++..|+..+++|.+||..+++.....+-
T Consensus 29 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 5677887766663 79999999999999999999999998877653
No 24
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=90.12 E-value=0.31 Score=38.90 Aligned_cols=77 Identities=12% Similarity=0.200 Sum_probs=49.7
Q ss_pred HHHhCCcccchhccccCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcC--------------ccchhhhhcc
Q 046385 52 ELLNGSPIFCYDLMRMDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHN--------------LRNRFIKIRF 117 (218)
Q Consensus 52 ell~~~~~~~~~~fRM~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~--------------~s~r~i~~~F 117 (218)
+++..+|+-...++++-...+..+.+.+... ...++++|++-+|..++.. .+...++...
T Consensus 100 ~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l------~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~l 173 (222)
T 1ft9_A 100 QKLQTCPSMAWGLIAILGRALTSCMRTIEDL------MFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLI 173 (222)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH------HTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHh
Confidence 3444355444444444333333333333211 2458999999999988632 4567899999
Q ss_pred cccccchhHHHHHHHHH
Q 046385 118 QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 118 ~~S~sTVsr~f~eVl~A 134 (218)
|+|.+||||.+++.-+.
T Consensus 174 G~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 174 GSSRQTTSTALNSLIKE 190 (222)
T ss_dssp CSCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHC
Confidence 99999999999986554
No 25
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.01 E-value=0.21 Score=36.25 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
+..+.+++..+...+ ..|.+.+.++..|++|.+||+++++..-.
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 457788887776554 58899999999999999999999987543
No 26
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=89.56 E-value=0.36 Score=39.31 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHHHhc--------------CccchhhhhcccccccchhHHHHHHHHH-HHhhhhhhcCC
Q 046385 90 HLTVEEKMAMFLFTISH--------------NLRNRFIKIRFQHSGHTVHRYFHEVLSA-MMKFSKEMITP 145 (218)
Q Consensus 90 ~isveE~laifL~~la~--------------~~s~r~i~~~F~~S~sTVsr~f~eVl~A-I~~L~~~~Ik~ 145 (218)
.-++++||+-+|..++. ..+..+++...|+|.+||||.+++..+. ++.....-|..
T Consensus 162 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 162 HRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp CSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 45899999999988763 2356899999999999999999987665 33444443333
No 27
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=89.53 E-value=0.25 Score=38.62 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHHHhcC-------------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++|++-+|..++.. .+..+++...|+|.+||||.+++.-+.
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 457999999999887652 355789999999999999999986654
No 28
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.44 E-value=0.13 Score=33.44 Aligned_cols=41 Identities=10% Similarity=0.164 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHhcCcc----chhhhhcccccccchhHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLR----NRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s----~r~i~~~F~~S~sTVsr~f~eV 131 (218)
..|.|.++.+ +..+..|.+ .+.++..|++|.+||.+.+.+.
T Consensus 5 ~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 5 IFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred cCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678888888 777777888 9999999999999999887643
No 29
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=89.40 E-value=0.25 Score=38.08 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=36.2
Q ss_pred CccchHHHHHHHHHHH-Hh-cCccchhhhh----cc--cccccchhHHHHH
Q 046385 88 SKHLTVEEKMAMFLFT-IS-HNLRNRFIKI----RF--QHSGHTVHRYFHE 130 (218)
Q Consensus 88 T~~isveE~laifL~~-la-~~~s~r~i~~----~F--~~S~sTVsr~f~e 130 (218)
...+|.++++.|..+. -. .+.+..+++. .| ++|.+|||++.+.
T Consensus 9 R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 9 RRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp SSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 3589999999999998 33 4467778999 99 8999999999876
No 30
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.20 E-value=0.21 Score=35.48 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHHhc-CccchhhhhcccccccchhHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISH-NLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 90 ~isveE~laifL~~la~-~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
..|.+.++.+...++.. |.+.+.++..||+|.+||.+.+.+.
T Consensus 5 ~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 46778888777677766 8999999999999999999988753
No 31
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=89.20 E-value=0.31 Score=39.30 Aligned_cols=46 Identities=9% Similarity=0.217 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHHHHhcC--------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHN--------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 89 ~~isveE~laifL~~la~~--------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..-++++|++-+|..++.. .+..+++...|+|++||||.+++.-+.
T Consensus 160 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 160 PTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp CCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 3568999999999987643 366899999999999999999987544
No 32
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.92 E-value=0.28 Score=37.35 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
+..+.+++..|...+ ..|.+.+.++..|++|.+||++.++....
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356777777776555 57899999999999999999999987654
No 33
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=88.80 E-value=0.54 Score=37.26 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHHHhcC-----------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-----------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-----------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.-++++|++-+|..++.. .+..+++...|+|.+||||++++.-+.
T Consensus 150 ~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 150 LKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 458899999999877653 356799999999999999999987766
No 34
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=88.64 E-value=0.32 Score=38.33 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHhcC-------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.-++++|++-+|..++.. .+..+++...|+|.+||||.+++.-+.
T Consensus 139 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 139 FEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 457999999999877632 367899999999999999999987665
No 35
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=88.37 E-value=0.48 Score=37.62 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHhcC-------------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++|++-+|..++.. .+..+++...|+|.+||||.+++.-+.
T Consensus 157 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 458999999999988653 256899999999999999999876654
No 36
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=88.29 E-value=0.27 Score=36.54 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
.++.+++..|...+ ..|.+.+.++..|++|.+||++++...
T Consensus 6 ~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 6 ALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 46777776665544 688999999999999999999998753
No 37
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=88.23 E-value=0.5 Score=37.87 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHHhcC----------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN----------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~----------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++|++-+|..++.. .+...++...|+|++||||++++.-+.
T Consensus 151 ~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 151 AQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp CCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 568999999999998642 245789999999999999999875544
No 38
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=88.10 E-value=0.52 Score=38.31 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHHHhc--------------CccchhhhhcccccccchhHHHHHHHHH-HHhhhhhhcCCC
Q 046385 90 HLTVEEKMAMFLFTISH--------------NLRNRFIKIRFQHSGHTVHRYFHEVLSA-MMKFSKEMITPP 146 (218)
Q Consensus 90 ~isveE~laifL~~la~--------------~~s~r~i~~~F~~S~sTVsr~f~eVl~A-I~~L~~~~Ik~P 146 (218)
.-++++|++-+|..++. ..+..+++...|+|++||||.+++.-+. ++.....-|...
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 217 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVY 217 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEES
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEe
Confidence 46899999999987753 2366789999999999999999987665 334443333333
No 39
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=87.55 E-value=0.42 Score=39.42 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHHHHhcC-------------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++||+-+|..++.. .+...++...|+|++||||++.+.-+.
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 458999999999988753 245789999999999999999886654
No 40
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=87.51 E-value=0.5 Score=34.39 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCCccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 86 SDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 86 ~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
..++.=+.+++++|.+..+..+.|...++.+|++|.++|.+...++.+
T Consensus 28 ~~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~~ 75 (95)
T 2jrt_A 28 LDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAA 75 (95)
T ss_dssp SSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HhhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344567889999999999999999999999999999999998876643
No 41
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=87.35 E-value=0.43 Score=33.96 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
..+|..|+-.+.| ++.|.++..|+...++|..||..++..++..+-
T Consensus 28 ~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 28 DVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3677777655444 449999999999999999999999999887754
No 42
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=86.95 E-value=0.54 Score=36.59 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHhhhhh
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMKFSKE 141 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~L~~~ 141 (218)
.+|..++-.+.|+++ .|.|+..|+...++|.+||....+.....+-....+
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 190 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 190 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777664 689999999999999999999999999888754333
No 43
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=86.77 E-value=1.2 Score=32.96 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=47.0
Q ss_pred cccchhccccCHHHHHHHHHHHHhcCccCCC---ccchHHHHHHHHHHHHhcCccchhhhhccc--ccccchhHHHHH
Q 046385 58 PIFCYDLMRMDKNGFISLCQLFKEKGWLSDS---KHLTVEEKMAMFLFTISHNLRNRFIKIRFQ--HSGHTVHRYFHE 130 (218)
Q Consensus 58 ~~~~~~~fRM~~~~F~~L~~~L~~~~~~~~T---~~isveE~laifL~~la~~~s~r~i~~~F~--~S~sTVsr~f~e 130 (218)
..+.-..|.+++.|....+......+....+ ..++.++...+.-.......+.+.++..++ +|.+||++++++
T Consensus 25 ~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 3445566778888888877766543322111 245666554443333334478899999988 789999998876
No 44
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=86.76 E-value=0.66 Score=33.51 Aligned_cols=49 Identities=20% Similarity=0.073 Sum_probs=43.4
Q ss_pred CCccchHHHHHHHHHHHHhcCccchhhhhcc-cccccchhHHHHHHHHHH
Q 046385 87 DSKHLTVEEKMAMFLFTISHNLRNRFIKIRF-QHSGHTVHRYFHEVLSAM 135 (218)
Q Consensus 87 ~T~~isveE~laifL~~la~~~s~r~i~~~F-~~S~sTVsr~f~eVl~AI 135 (218)
.++.+...-|+||+|-.--++.|+..++..| |+..+||+.-++.+-+.+
T Consensus 26 R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 26 RSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3468889999999999889999999999999 899999999888876655
No 45
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=86.44 E-value=0.69 Score=37.33 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHHHhc---------------Cccchhhhhcccccc-cchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISH---------------NLRNRFIKIRFQHSG-HTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~---------------~~s~r~i~~~F~~S~-sTVsr~f~eVl~A 134 (218)
.-++++|++-+|..++. ..+..+++...|+|+ +||||.+++.-+.
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 45789999999987652 345678999999999 7999999987654
No 46
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=86.20 E-value=0.39 Score=38.24 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHHHHhc--------------CccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISH--------------NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~--------------~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++|++-+|..++. ..+..+++...|+|.+||||.+++.-+.
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 146 FTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp HSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45899999999988752 2466789999999999999999986554
No 47
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=86.04 E-value=0.5 Score=35.01 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHHHhcCccch-hhhhcccccccchhHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNR-FIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r-~i~~~F~~S~sTVsr~f~eVl 132 (218)
...|.|.++.+..++..+|.+.. .++..|++|.+||+++++.--
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred eeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchh
Confidence 46889999888777656776665 999999999999999987643
No 48
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=86.01 E-value=0.55 Score=34.88 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHh
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMK 137 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~ 137 (218)
+|..++-.+.|+ ...|.|+..++..+++|.+||.+.++.....+-.
T Consensus 23 L~~~~r~vl~l~-y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 23 LTDKQMNYIELY-YADDYSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp SCHHHHHHHHHH-HHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 566776554444 4678999999999999999999999998887763
No 49
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.45 E-value=0.47 Score=33.26 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
..+.+.+..+...+ ..|.+.+.++..|++|.+||.+++.+.-.
T Consensus 22 ~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 22 SLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 55677766555444 57889999999999999999999876543
No 50
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=85.45 E-value=0.73 Score=36.86 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHh
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMK 137 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~ 137 (218)
.+|..++..+.|+++ .|.++..|+..+|+|.+||++..+..+..+-.
T Consensus 187 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 578888888888774 68999999999999999999999999888764
No 51
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=85.44 E-value=0.55 Score=37.47 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=36.6
Q ss_pred chHH-HHHHHHHHHHhc-------------CccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVE-EKMAMFLFTISH-------------NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isve-E~laifL~~la~-------------~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
-++. +|++-+|..++. ..+..+++...|+|.+||||.+++.-+.
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 145 GQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 3566 999999988874 2467899999999999999999987665
No 52
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.34 E-value=0.37 Score=33.73 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 67 MDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 67 M~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
|+.+....+++.|+..+.... |..-+.+.++..|++|.+||.+++....+
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~-----------------g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDD-----------------GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHT-----------------TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcc-----------------CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677777665521110 12234567899999999998887765443
No 53
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=84.98 E-value=0.49 Score=37.80 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHHHhc-------------CccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISH-------------NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~-------------~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.-++++|++-+|..++. ..+..+++...|+|++||||.+++.-+.
T Consensus 150 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 150 QKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp HSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45789999999966542 2356789999999999999999987554
No 54
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=84.63 E-value=0.53 Score=36.24 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+..+.+++..|...+ ..|.+.+.++..|++|.+||++.++.
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 356788877776554 57899999999999999999998875
No 55
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.68 E-value=1.5 Score=31.85 Aligned_cols=60 Identities=5% Similarity=0.026 Sum_probs=42.1
Q ss_pred cccCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 65 MRMDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 65 fRM~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
..|+...+..+.+.++.-. -..++.++........+...++..+++|++|||+++....+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~---------~~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 12 APLDSQAAAQVASTLQALA---------TPSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp SCCHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3556667777777765432 12344554443334789999999999999999999987766
No 56
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=83.59 E-value=1 Score=33.23 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHh
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMK 137 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~ 137 (218)
+|..++-.+.| ....|.|+..++..+++|.+||.+.++.....+-.
T Consensus 26 L~~~~r~vl~l-~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLEL-FYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHH-HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56666655444 45678999999999999999999999998887763
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=81.67 E-value=1.2 Score=34.54 Aligned_cols=45 Identities=9% Similarity=0.151 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHhcC-------------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++++|++-+|..++.. .+..+++...|.|.+||||.+++.-+.
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 568999999999987642 355789999999999999999987655
No 58
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=81.66 E-value=1.4 Score=33.86 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..++..+.|+++ .|.|+..|+...|+|.+||...++.....+-
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 467777777766554 6789999999999999999999998887765
No 59
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=81.18 E-value=0.35 Score=29.03 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.2
Q ss_pred CcccchhccccCHHHHHHHHHHHH
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLFK 80 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L~ 80 (218)
++++|...|+|+++.|..|-..=+
T Consensus 2 sd~dF~~vFgmsr~eF~~LP~WKq 25 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFANLPLWLQ 25 (35)
T ss_dssp CHHHHHHHHSSCHHHHHHSCHHHH
T ss_pred CHHHHHHHHCCCHHHHHHCcHHHH
Confidence 578999999999999998865543
No 60
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=81.00 E-value=1.2 Score=34.84 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHHhcC-------------ccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------------LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------------~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.-++++|++-+|..++.. .+...++...|+|.+||||.+++.-+.
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 468999999999988642 355789999999999999999987654
No 61
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=80.59 E-value=0.47 Score=36.82 Aligned_cols=42 Identities=7% Similarity=0.062 Sum_probs=1.0
Q ss_pred cchHHHHHHHHHHHHh---cCccchhhhhcccccccchhHHHHHH
Q 046385 90 HLTVEEKMAMFLFTIS---HNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 90 ~isveE~laifL~~la---~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
..++++|++-+|..++ ...+..+++...|+|.+|+||+.++.
T Consensus 148 ~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 148 MYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp HC-------------------------------------------
T ss_pred cCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 4578899999987654 34567899999999999999998764
No 62
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=80.53 E-value=1.5 Score=36.14 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=38.6
Q ss_pred CccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 88 SKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 88 T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
...+|..|+-.+.| ++.|.++..|+...++|..||..++..+.+.+-
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 34688888654444 689999999999999999999999998877643
No 63
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=80.27 E-value=1.8 Score=31.73 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=42.4
Q ss_pred CccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 88 SKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 88 T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
++.+...-|+||+|-.--++.|+..|+..||+..+||..-++.+-+.+-
T Consensus 31 ~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 31 TRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4578888999999988889999999999999999999988877766543
No 64
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=80.18 E-value=1 Score=34.21 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=26.2
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+..|+.|.+|+.|+...++|..||+|+-+
T Consensus 68 V~klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 68 VAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 345689999999999999999999999654
No 65
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=80.10 E-value=2.5 Score=30.18 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 67 MDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 67 M~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
|+.+.+..+...++.-. -.-++.|.......+.+...++..+++|.+|||++++...++
T Consensus 8 ~~~~~~~~~~~~~~~l~---------~~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 8 INTDTLERVTEIFKALG---------DYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSV 66 (106)
T ss_dssp -CHHHHHHHHHHHHHTC---------SHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44556666666664321 122344443333445688999999999999999999876654
No 66
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=79.81 E-value=0.41 Score=29.06 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=19.9
Q ss_pred CcccchhccccCHHHHHHHHHHH
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLF 79 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L 79 (218)
++++|...|+|+++.|..|-..=
T Consensus 4 sd~dF~~vFgmsr~eF~~LP~WK 26 (37)
T 1und_A 4 SEQDFVSVFGITRGQFAALPGWK 26 (37)
T ss_dssp CHHHHHHHHSSCHHHHHHSCHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHH
Confidence 68899999999999999886543
No 67
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=78.98 E-value=1.9 Score=32.10 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHhh
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMKF 138 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~L 138 (218)
+|..++..+. + .-.|.++..|+..+++|.+||...++.....|-..
T Consensus 110 L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 110 FSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp SCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667766555 4 45789999999999999999999999998887743
No 68
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=78.64 E-value=3.4 Score=33.67 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
..+|..|+-.+.| ++.|.++..|+...++|..||..++..+.+.+-
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4688888766544 589999999999999999999999998877654
No 69
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=77.54 E-value=3.5 Score=34.66 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
..+|..|+-.+.| ++.|.++..|+...++|..||..++.++.+.+-
T Consensus 196 ~~Lt~re~~vl~~--~~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHW--MSRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3678888654444 379999999999999999999999999877653
No 70
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=76.94 E-value=1.9 Score=27.59 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcC--ccchhhhhcc-----cccccchhHHHH
Q 046385 94 EEKMAMFLFTISHN--LRNRFIKIRF-----QHSGHTVHRYFH 129 (218)
Q Consensus 94 eE~laifL~~la~~--~s~r~i~~~F-----~~S~sTVsr~f~ 129 (218)
.+|.++.+..+..+ .+-.+++..+ ++|.+||+|.++
T Consensus 4 ~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 4 GQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 35555555555433 4556788888 999999999998
No 71
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=75.87 E-value=1.7 Score=30.24 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.4
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+..+++..+++|++||++++....+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456788999999999999999998876554
No 72
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=75.63 E-value=1 Score=32.40 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHHHhcC-------ccchhhhhcccccccchhHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHN-------LRNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 90 ~isveE~laifL~~la~~-------~s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
..|.+.++.+...++..+ .+...++..||+|.+||.+.+....
T Consensus 6 ~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 6 RFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457788877776666554 7899999999999999999988743
No 73
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=75.47 E-value=4.6 Score=29.64 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=22.0
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+..+++..+++|++||++.++...+.
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36788999999999999999998876654
No 74
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=74.95 E-value=0.6 Score=37.30 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+|..++..+.|+++ .|.++..|+..+|+|.+||.+.++..+..
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ---------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 578888888877665 67899999999999999999998877654
No 75
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=74.92 E-value=2.1 Score=39.23 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHHHH---hcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTI---SHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~l---a~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.++..+|-.+.|++. +.+.++..|+..+++|.+||..+.++.+..|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 467888888888884 36789999999999999999999998888775
No 76
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=74.36 E-value=2.1 Score=38.83 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHH-h--cCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTI-S--HNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~l-a--~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..++-.+.|++. . .+.++..|+..|++|.+||..+.++.+..|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 467778888888874 3 6789999999999999999999999888876
No 77
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=73.93 E-value=1.5 Score=31.60 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHhcCccchhhhhcccccccchhHHHHH
Q 046385 103 TISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 103 ~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
....+.+..+++..+|+|.+||||.++.
T Consensus 16 l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 16 IVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3345578899999999999999998875
No 78
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=73.81 E-value=5.2 Score=27.57 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=25.6
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+...++..+++|.+||+++++.-.+.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356788999999999999999999877655
No 79
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=73.68 E-value=3.8 Score=33.34 Aligned_cols=46 Identities=13% Similarity=-0.042 Sum_probs=39.0
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
..+|..|+-.+.| ++.|.++..|+...++|..||..+++.+.+.+-
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3688888766544 589999999999999999999999998877764
No 80
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=72.75 E-value=4.3 Score=29.83 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
...++++-.++...+.|.+.++.+|++|.+||.+....+.+.
T Consensus 36 a~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~~ 77 (101)
T 2oa4_A 36 ASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEH 77 (101)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 336999999999999999999999999999999988876543
No 81
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=72.74 E-value=2.1 Score=29.97 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=26.0
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
....+..+++..+++|.+||+++++...++
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 566788999999999999999999877665
No 82
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=72.69 E-value=1.7 Score=30.06 Aligned_cols=28 Identities=4% Similarity=-0.111 Sum_probs=24.1
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+..+++..+++|.+||++++..-.++
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~~ 65 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRDE 65 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4788999999999999999999876544
No 83
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=71.75 E-value=5.9 Score=28.56 Aligned_cols=29 Identities=0% Similarity=-0.077 Sum_probs=24.6
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..+++|++||++.++...+.
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 35688999999999999999988876554
No 84
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.63 E-value=3.1 Score=29.30 Aligned_cols=39 Identities=3% Similarity=0.031 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++.|.........+...++...++|.+|||+++....++
T Consensus 25 r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 25 RLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344432222344688999999999999999999877665
No 85
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=71.51 E-value=4.9 Score=29.71 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=41.4
Q ss_pred ccCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 66 RMDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 66 RM~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.++.+.+..+.+.++.-. -..++.|+......+.+...++..+++|++|||++++..-++
T Consensus 27 ~~~~~~~~~~~~~~kaL~---------~~~rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~~ 86 (122)
T 1r1t_A 27 AIAPEVAQSLAEFFAVLA---------DPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNL 86 (122)
T ss_dssp CCCHHHHHHHHHHHHHHC---------CHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHhHHHHHHHHHHHhC---------CHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567777777777765432 122344443333335788999999999999999999876664
No 86
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=70.67 E-value=3.5 Score=30.40 Aligned_cols=41 Identities=7% Similarity=-0.010 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHh---cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTIS---HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la---~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+++...|+.++ .+.+.+.++..+++|++||++.++...+.
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 344444555553 34588999999999999999998876554
No 87
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=70.58 E-value=2.5 Score=30.95 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 92 TVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 92 sveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+.++...|+.-..+.+..+++..+++|++||++++..-.+.
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444555566433456788999999999999999998765554
No 88
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.54 E-value=2.7 Score=34.90 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 89 ~~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
..+|..++-.+.|+ ..|.++..|+...++|..||..+.++..+.+-
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 36888998888886 59999999999999999999999999887754
No 89
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=70.11 E-value=4.4 Score=29.71 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=29.8
Q ss_pred chHHH-HHHHHHHHH-hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTI-SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~l-a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+..+|+.- ..+.+..+++..++++++||++.++...+.
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 44433 344444432 045788999999999999999988765443
No 90
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.51 E-value=2.7 Score=31.12 Aligned_cols=41 Identities=7% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcC-ccchhhhhcccccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTISHN-LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la~~-~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.++...|+--+.. .+...++...++|++||+|.+....+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444444433333 688999999999999999998876655
No 91
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=68.37 E-value=3.2 Score=27.60 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=22.9
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+..+++..+++|++||++++...-+.
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4677889999999999999998765443
No 92
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=68.34 E-value=2 Score=30.50 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhc-CccchhhhhcccccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTISH-NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la~-~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.-++.|+...+.+ +.+...++..+++|.+|||+++...-++
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3456666454544 4678999999999999999999977666
No 93
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=67.93 E-value=1.3 Score=29.64 Aligned_cols=21 Identities=14% Similarity=-0.127 Sum_probs=18.5
Q ss_pred cchhhhhcccccccchhHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+..+++..-|+|.+|||++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 457889999999999999887
No 94
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=67.30 E-value=3.8 Score=33.44 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=25.0
Q ss_pred HHHhcCccchhhhhcccccccchhHHHHH
Q 046385 102 FTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 102 ~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
++...|.++..++..+|+|+.||||.+..
T Consensus 19 ~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 19 RMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 34578899999999999999999997654
No 95
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=66.89 E-value=2.7 Score=30.26 Aligned_cols=30 Identities=10% Similarity=-0.076 Sum_probs=25.7
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+..+++..+++|.+|||++++.-.++
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345678999999999999999999887665
No 96
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=66.59 E-value=2.2 Score=29.85 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=28.5
Q ss_pred HHHHHHHHHh-cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 96 KMAMFLFTIS-HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 96 ~laifL~~la-~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++.|. ..|+ .+.+..+++..+++|.+|||+++..-.++
T Consensus 25 r~~Il-~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 25 RLQIL-CMLHNQELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp HHHHH-HHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34443 3344 34578999999999999999999877665
No 97
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=66.36 E-value=3.5 Score=39.04 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHHH---hcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTI---SHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 90 ~isveE~laifL~~l---a~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
.+|..++..+.|++. +.|.|+..|+..+++|.+||..+.+..+..|-
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR 599 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 599 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTT
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 678899988888876 27889999999999999999999987766543
No 98
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=66.35 E-value=3.1 Score=30.37 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++.|.........+...++..+++|.+|||++++.-.++
T Consensus 20 R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 20 RRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp HHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 444443333455678999999999999999999877665
No 99
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=66.24 E-value=1.5 Score=30.05 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.7
Q ss_pred CcccchhccccCHHHHHHHHHHHH
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLFK 80 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L~ 80 (218)
++++|...|+|+++.|..|=.+=+
T Consensus 35 sdedF~~vFgmsr~eF~~LP~WKq 58 (68)
T 1qzp_A 35 SAEDFSRVFAMSPEEFGKLALWKR 58 (68)
T ss_dssp CHHHHHHHSSSCHHHHHHSCHHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHHH
Confidence 789999999999999999865533
No 100
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=65.92 E-value=10 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=24.9
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..++++++||++.++...+.
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 87 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36788999999999999999998876554
No 101
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=65.89 E-value=1.9 Score=36.65 Aligned_cols=31 Identities=29% Similarity=0.217 Sum_probs=25.5
Q ss_pred ccchhhhhcccccccchhHHHHH-----------HHHHHHhh
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHE-----------VLSAMMKF 138 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~e-----------Vl~AI~~L 138 (218)
.+.++|+..+|+|.+||||.++. |++++-+|
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~l 52 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKEL 52 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999964 67776665
No 102
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=65.81 E-value=4.3 Score=28.27 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=22.8
Q ss_pred ccchhhhhcccccccchhHHHHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
.+...++..++++++||+++++...+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 78899999999999999999876544
No 103
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=65.77 E-value=2.7 Score=27.09 Aligned_cols=27 Identities=4% Similarity=0.137 Sum_probs=22.9
Q ss_pred HHHhcCccchhhhhcccccccchhHHHH
Q 046385 102 FTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 102 ~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.....| ++..++...++|.+|||++++
T Consensus 9 ~~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 9 YLEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 444566 999999999999999999983
No 104
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=65.74 E-value=11 Score=27.99 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=43.8
Q ss_pred CcccchhccccCHHHHHHHHHHHHhcCccCC-------CccchHHHHHHHHHHHHhc--Cccchhhhhcc--------c-
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLFKEKGWLSD-------SKHLTVEEKMAMFLFTISH--NLRNRFIKIRF--------Q- 118 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L~~~~~~~~-------T~~isveE~laifL~~la~--~~s~r~i~~~F--------~- 118 (218)
+..+.-..|.+++.|+...+......+.+.+ ...++.+....| +..+.. ..+.+.++..+ +
T Consensus 50 s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~~g~ 128 (149)
T 1k78_A 50 RPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKI-AEYKRQNPTMFAWEIRDRLLAERVCDNDT 128 (149)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHH-HHHHHHCTTCCHHHHHHHHHHTTSSCTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHH-HHHHHhCcchhHHHHHHHHHHhcccccCC
Confidence 3445556778888888888877665432221 123454433333 233332 35667776665 4
Q ss_pred -ccccchhHHHHHHH
Q 046385 119 -HSGHTVHRYFHEVL 132 (218)
Q Consensus 119 -~S~sTVsr~f~eVl 132 (218)
+|.+||++++++-+
T Consensus 129 ~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 129 VPSVSSINRIIRTKV 143 (149)
T ss_dssp SCCHHHHHHHHHCC-
T ss_pred CcCHHHHHHHHHHHh
Confidence 78899998887543
No 105
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=64.32 E-value=3.6 Score=32.14 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
++..|. -.|..++.|.++..++...++|..||..|+..+.+-+-
T Consensus 155 Lt~rE~--~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 155 LTPRER--DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp SCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHH--HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 455553 45778899999999999999999999999999887764
No 106
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=64.01 E-value=3.5 Score=30.37 Aligned_cols=29 Identities=7% Similarity=-0.103 Sum_probs=24.9
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..+++|.+|||++++...++
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45688999999999999999999876654
No 107
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=63.98 E-value=9.3 Score=27.95 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=24.8
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+..+++..++++++||++.++.-.+.
T Consensus 44 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35888999999999999999988876554
No 108
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=63.90 E-value=8.1 Score=28.13 Aligned_cols=42 Identities=5% Similarity=-0.006 Sum_probs=30.6
Q ss_pred chHHH-HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+...|+ ..+.+...++..+++|++||++.+....+.
T Consensus 35 l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 35 LSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp CCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 44433 3333444 666788999999999999999988776654
No 109
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=63.72 E-value=10 Score=28.17 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=40.0
Q ss_pred hccccCHHHHHHHHHHHHhcCccCCCccchHHH-HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 63 DLMRMDKNGFISLCQLFKEKGWLSDSKHLTVEE-KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 63 ~~fRM~~~~F~~L~~~L~~~~~~~~T~~isveE-~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..+.....+-..+.... .++..+ .+..+|+.-..+.+...++...+++++||++.+..-.+.
T Consensus 23 ~l~~~~~~~~~~~~~~l~~~~------~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 23 NILRLHGLVFGDLNRQLLDET------GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 344455444444444444111 244443 333333223456788999999999999999998876665
No 110
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=63.64 E-value=6 Score=29.26 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=24.7
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..+++|++||++.+....+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~ 49 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKD 49 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56788999999999999999988876553
No 111
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=63.42 E-value=4.3 Score=29.66 Aligned_cols=30 Identities=3% Similarity=-0.088 Sum_probs=24.7
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
....+...++..+++|++|||++++...++
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345678999999999999999999866544
No 112
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=63.12 E-value=5.7 Score=26.86 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=23.9
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+..+++..+++|.+||++++....++
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4677899999999999999998876654
No 113
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=63.02 E-value=8.6 Score=27.97 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=24.1
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+...++..+++|++||++.+....+.
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 4678999999999999999988876655
No 114
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=62.92 E-value=4.8 Score=28.53 Aligned_cols=31 Identities=6% Similarity=0.096 Sum_probs=25.8
Q ss_pred HhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
...+.+..+++..+++|.+||+++++.-.++
T Consensus 31 ~~~~~~~~ela~~l~is~~tv~~~l~~L~~~ 61 (114)
T 2oqg_A 31 GRADQSASSLATRLPVSRQAIAKHLNALQAC 61 (114)
T ss_dssp HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455788999999999999999999876554
No 115
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=62.02 E-value=11 Score=28.39 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=28.3
Q ss_pred chHHH-HHHHHHHHH-hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTI-SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~l-a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+..+|+.. ..+.+...++..++++++||++.++...+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR 89 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 44443 334444444 247899999999999999999988876554
No 116
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=61.72 E-value=9.7 Score=28.18 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=25.3
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+..+++..++++++||++.++.-.+.
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~ 82 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQS 82 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356788999999999999999988876654
No 117
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=61.55 E-value=6.7 Score=26.83 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhc--CccchhhhhcccccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTISH--NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la~--~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++++.-+|.-.+. +.+...++...++|.+||.+++..--+.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4556666666663 4677999999999999998887765443
No 118
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=61.44 E-value=13 Score=28.55 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhc--CccchhhhhcccccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTISH--NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la~--~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+-.+...|+.-+. +.+...++...+++++||++.++...+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3344445554443 3799999999999999999999877665
No 119
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=61.26 E-value=7.8 Score=28.67 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=30.2
Q ss_pred cchHHHH-HHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEK-MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~-laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.++..+- +...|+. ..+.+...++..+++|++||+++++...+.
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 3555443 2333332 345788999999999999999988876554
No 120
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=60.66 E-value=1.4 Score=29.67 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.3
Q ss_pred ccchhhhhcccccccchhHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+..+++..-|+|.+|||++++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4678999999999999999875
No 121
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=59.77 E-value=1.7 Score=29.76 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.6
Q ss_pred CcccchhccccCHHHHHHHHHHHH
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLFK 80 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L~ 80 (218)
++++|...|+|+++.|..|-.+=+
T Consensus 34 sdedF~~vFgms~~eF~~LP~WKq 57 (67)
T 1yu8_X 34 SDEDFKAVFGMTRSAFANLPLWKQ 57 (67)
T ss_dssp CHHHHHHHHSSCHHHHHTSCHHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHHH
Confidence 789999999999999998865543
No 122
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=59.30 E-value=5.6 Score=26.81 Aligned_cols=41 Identities=7% Similarity=0.179 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCccchhhhhccc----ccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTISHNLRNRFIKIRFQ----HSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la~~~s~r~i~~~F~----~S~sTVsr~f~eVl~A 134 (218)
.+..+..+||. ..+.+.++++..++ +|.+||+++++...+.
T Consensus 10 ~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k 54 (82)
T 1p6r_A 10 AELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK 54 (82)
T ss_dssp HHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC
Confidence 44556666665 44678889999886 6889999888876554
No 123
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=59.07 E-value=7.5 Score=27.60 Aligned_cols=30 Identities=7% Similarity=0.081 Sum_probs=25.0
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
|...+-..++..+++|++||++++..-.++
T Consensus 31 g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 31 GTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp CSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 435678999999999999999988876655
No 124
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=59.02 E-value=12 Score=27.75 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=24.4
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+...++..++++++||++.++...+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6788999999999999999988876654
No 125
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.02 E-value=16 Score=26.67 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=24.4
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+...++..++++++||++.++.-.+.
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6788899999999999999998876655
No 126
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=58.86 E-value=6 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.5
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+..+++..+++|++||++.++.-.+.
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 6788999999999999999998876554
No 127
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=58.80 E-value=4.7 Score=30.62 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHh
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMK 137 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~ 137 (218)
.+|..++.++.|++ -.|.|+..|+...++|..||...++.....+-.
T Consensus 93 ~Lp~~~r~vl~L~~-~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTS-SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67888876665554 457899999999999999999999999888874
No 128
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=58.47 E-value=7.1 Score=27.69 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=40.0
Q ss_pred ccchhccccCHHHHHHHHHHHHhcCccCC------C-ccchHHHHHHHHHHHHhc--Cccchhhhhcc---c-------c
Q 046385 59 IFCYDLMRMDKNGFISLCQLFKEKGWLSD------S-KHLTVEEKMAMFLFTISH--NLRNRFIKIRF---Q-------H 119 (218)
Q Consensus 59 ~~~~~~fRM~~~~F~~L~~~L~~~~~~~~------T-~~isveE~laifL~~la~--~~s~r~i~~~F---~-------~ 119 (218)
.+.-..|.+++.|+...+......+...+ . ..++.++.. ..+..+.. ..+.+.++..+ + +
T Consensus 37 ~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~-~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~ 115 (128)
T 1pdn_C 37 CVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIEN-RIEEYKRSSPGMFSWEIREKLIREGVCDRSTAP 115 (128)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHH-HHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHH-HHHHHHHhCcchHHHHHHHHHHHcCCccccCCc
Confidence 44556677888888877777654332211 1 134443332 22333332 35677777777 5 5
Q ss_pred cccchhHHHHH
Q 046385 120 SGHTVHRYFHE 130 (218)
Q Consensus 120 S~sTVsr~f~e 130 (218)
|.+||++++++
T Consensus 116 s~~tv~r~l~~ 126 (128)
T 1pdn_C 116 SVSAISRLVRG 126 (128)
T ss_dssp CHHHHHHHC--
T ss_pred CHHHHHHHHHh
Confidence 88999988764
No 129
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=58.30 E-value=6.1 Score=32.24 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=44.2
Q ss_pred CccchHHHHHHHHHHHHhcC--ccchhhhhcccccccchhHHHHHHHHHHHhhhhhhcC-CCCCCC
Q 046385 88 SKHLTVEEKMAMFLFTISHN--LRNRFIKIRFQHSGHTVHRYFHEVLSAMMKFSKEMIT-PPSFTD 150 (218)
Q Consensus 88 T~~isveE~laifL~~la~~--~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~L~~~~Ik-~P~~~~ 150 (218)
-+++|.-|+=-..++.|..+ .+.+.++.++++|.+.|||++.- ..|-.++|. +|+..+
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~-----A~LP~~lv~~fp~p~d 81 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT-----AKLPKSVVALFSHPGE 81 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH-----HHSCHHHHHTSSSGGG
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH-----hcCCHHHHHHcCCHHh
Confidence 36899999999999999887 78899999999999999998863 234444444 365444
No 130
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=58.25 E-value=3.6 Score=35.16 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=26.0
Q ss_pred ccchhhhhcccccccchhHHHH-----------HHHHHHHhhh
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFH-----------EVLSAMMKFS 139 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~-----------eVl~AI~~L~ 139 (218)
.+.++|+...|+|.+||||.++ +|++++-+|.
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lg 52 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMG 52 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhC
Confidence 4568999999999999999995 5677766663
No 131
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=58.21 E-value=13 Score=27.25 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=30.1
Q ss_pred chHHH-HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+...|+. ..+.+...++..++++.+||++.++...+.
T Consensus 40 l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 40 ITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 44443 23333333 346788999999999999999988776554
No 132
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=58.17 E-value=5.3 Score=30.40 Aligned_cols=33 Identities=15% Similarity=-0.010 Sum_probs=27.9
Q ss_pred HHHHHHHhcCccchhhhhcccc-cccchhHHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQH-SGHTVHRYFHE 130 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~-S~sTVsr~f~e 130 (218)
.-.+-.++.|.|.+.++..+++ |.+|+++..++
T Consensus 19 e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 19 DDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3355667899999999999999 99999988665
No 133
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=57.98 E-value=22 Score=25.34 Aligned_cols=44 Identities=9% Similarity=-0.090 Sum_probs=30.6
Q ss_pred cchHHHH-HHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEK-MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~-laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.++..+- +...|+. ..+.+...++..+++|++||++.++.-.+.
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4555442 3333333 336788999999999999999988776554
No 134
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=57.75 E-value=8.1 Score=27.96 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=30.1
Q ss_pred chHHH-HHHHHHHHHhc-CccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTISH-NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la~-~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+...|+.-+. +.+...++..++++++||++.+..-.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 44433 33334443332 5789999999999999999988766554
No 135
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=57.49 E-value=1.7 Score=29.75 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=19.9
Q ss_pred CcccchhccccCHHHHHHHHHHH
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLF 79 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L 79 (218)
++++|...|+|+++.|..|-.+=
T Consensus 34 sdedF~~vFgmsr~eF~~LP~WK 56 (67)
T 2k6m_S 34 TDEDFEFALDMTRDEYNALPAWK 56 (67)
T ss_dssp CHHHHHHHTSSCHHHHTTSCHHH
T ss_pred CHHHHHHHHCcCHHHHHHCcHHH
Confidence 78999999999999999876543
No 136
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=57.38 E-value=7.7 Score=26.66 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhcC-ccchhhhhcccccccchhHHHHH
Q 046385 92 TVEEKMAMFLFTISHN-LRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 92 sveE~laifL~~la~~-~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
--+++|.-.+-.+-.| .|.+.++..|||..+|...-+++
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 3467788888888889 79999999999999998876654
No 137
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=57.24 E-value=7.7 Score=28.34 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=30.7
Q ss_pred cchHHHH-HHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEK-MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~-laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.++..+- +...|+. ..+.+...++...+++++||++.++.-.+.
T Consensus 34 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 78 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA-NEPISQKEIALWTKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp SSCHHHHHHHHHHHH-HSSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 3555543 2223322 256788999999999999999988876554
No 138
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=57.21 E-value=11 Score=27.84 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=26.0
Q ss_pred HhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
-..+.+...++...++|++|||+.+..-.+.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~ 78 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNA 78 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4556788999999999999999988876554
No 139
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=57.16 E-value=5 Score=27.50 Aligned_cols=39 Identities=5% Similarity=0.122 Sum_probs=29.0
Q ss_pred HHHHHHHHH-hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 96 KMAMFLFTI-SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 96 ~laifL~~l-a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++.|..... ..+.+...++..+++|.+||+++++...++
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444443333 345788999999999999999999876665
No 140
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=56.52 E-value=6.9 Score=28.95 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=23.2
Q ss_pred CccchhhhhcccccccchhHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
+.+..+++...+++++||++.++...+
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 458999999999999999998876544
No 141
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=56.41 E-value=5.2 Score=31.77 Aligned_cols=44 Identities=30% Similarity=0.375 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAM 135 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI 135 (218)
.+|..|. -.|..++.|.++..++...++|..||..++..+.+-+
T Consensus 149 ~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4565554 3567789999999999999999999999999887654
No 142
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=56.37 E-value=8.1 Score=31.49 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhc-Cccc--hhhhhcccccccchhHHHHHHHH
Q 046385 92 TVEEKMAMFLFTISH-NLRN--RFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 92 sveE~laifL~~la~-~~s~--r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
+.++...-+||.++. +.+. ..++..+++|++||++.++...+
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456777788888863 6666 99999999999999988776543
No 143
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=56.04 E-value=8.2 Score=27.64 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCccchhhhhccc----ccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTISHNLRNRFIKIRFQ----HSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la~~~s~r~i~~~F~----~S~sTVsr~f~eVl~A 134 (218)
+..+..+|+. ..+.+..+++..++ +|.+||+++++...+.
T Consensus 12 ~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~ 55 (123)
T 1okr_A 12 EWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK 55 (123)
T ss_dssp HHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC
Confidence 3345555555 45788899999998 7899999999887765
No 144
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=56.03 E-value=12 Score=27.48 Aligned_cols=44 Identities=9% Similarity=0.258 Sum_probs=24.7
Q ss_pred chHHH-HHHHHHHHHh-cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTIS-HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la-~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+..+|+.-. .+.+..+++..++++++||++.++...+.
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 44433 3333444332 56788999999999999999998876554
No 145
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=55.92 E-value=13 Score=27.27 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.3
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..++++++||++.+....+.
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36788999999999999999988765544
No 146
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.87 E-value=9.2 Score=27.61 Aligned_cols=29 Identities=0% Similarity=-0.112 Sum_probs=24.6
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..+++|++||++.++...+.
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 35788999999999999999988776554
No 147
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=55.76 E-value=11 Score=28.12 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=23.7
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+...++...+++++||++.++...+.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~~ 78 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVRS 78 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3678899999999999999998876553
No 148
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=55.51 E-value=8.2 Score=26.84 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHh--cCccchhhhhcccccccchhHHHHHHH
Q 046385 94 EEKMAMFLFTIS--HNLRNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 94 eE~laifL~~la--~~~s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
++++.-+|.-.+ ...+...++..+++|+.||.+.+...-
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455555555544 245778999999999999877766543
No 149
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=55.45 E-value=6.7 Score=27.69 Aligned_cols=41 Identities=2% Similarity=-0.007 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 92 TVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 92 sveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+..+++..+|.. .|.+...++...++|++||.+++...-+.
T Consensus 17 ~~~~~IL~lL~~--~g~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 17 EIVCEAIKTIGI--EGATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp HHHHHHHHHHSS--STEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 556667777763 45888999999999999998888765443
No 150
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.07 E-value=5.9 Score=30.58 Aligned_cols=41 Identities=10% Similarity=0.099 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.-|+.|.........+...++..+++|++|||+++....++
T Consensus 58 p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444443333445778999999999999999999987666
No 151
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.04 E-value=7.6 Score=28.22 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=25.2
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+...++..+++|++||++.+..-.+.
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 456788999999999999999988776554
No 152
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=54.80 E-value=11 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=24.3
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+..+++..+++|.+||++.+....+.
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 5688999999999999999988876654
No 153
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=54.47 E-value=8.5 Score=29.09 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=30.1
Q ss_pred chHHH-HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+..+|+..+.+.+..+++..++++++|||+.+....+.
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~ 73 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEK 73 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 44444 233334433445666899999999999999998876554
No 154
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=54.23 E-value=11 Score=27.13 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=24.6
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..+++|.+||++.+....+.
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45788999999999999999988876554
No 155
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=54.20 E-value=6 Score=30.56 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
++..|+- .|..++.|.++..++...++|..||..++..+.+.+-
T Consensus 143 Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQ--VLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHH--HHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHH--HHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4444432 4566789999999999999999999999988877653
No 156
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=54.19 E-value=2.3 Score=30.61 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.5
Q ss_pred CcccchhccccCHHHHHHHHHHHHh
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLFKE 81 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L~~ 81 (218)
++++|...|+|+++.|..|=.+=+.
T Consensus 49 SdedF~~vFgMsr~eF~~LP~WKq~ 73 (88)
T 1ujs_A 49 SQEEFYQVFGMTISEFDRLALWKRN 73 (88)
T ss_dssp CTTHHHHHHSSCHHHHTTSCHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHHHH
Confidence 7899999999999999988765443
No 157
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=54.11 E-value=3.1 Score=35.14 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.5
Q ss_pred cchhhhhcccccccchhHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+.++|+...|+|.+||||.++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 4678999999999999999873
No 158
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=53.74 E-value=9.8 Score=27.76 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=25.0
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..++++.+||++.++...+.
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 35688999999999999999998877665
No 159
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=53.65 E-value=8.1 Score=26.76 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=23.0
Q ss_pred Cccchhh----hhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFI----KIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i----~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+..++ +..++++.+||++.++...+.
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 4667788 899999999999988876653
No 160
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=53.61 E-value=10 Score=27.81 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=23.1
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
-..|.|...++..+|+|.+|||++=+
T Consensus 81 ~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 81 KKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 46789999999999999999999754
No 161
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-biolog protein structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=53.40 E-value=5.8 Score=28.09 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=20.7
Q ss_pred ccccccc--cCCCccCccccccCCCCC
Q 046385 191 SKGHHQD--FGGSRCPINDIVGTGLGP 215 (218)
Q Consensus 191 ~dG~hip--~r~~ryh~~~~~~~~~~p 215 (218)
..|.-.| |++.+|.++||+..||++
T Consensus 21 ~~G~~lP~~yr~~~Y~V~Dw~~~~L~~ 47 (83)
T 2l1s_A 21 HIGDTVPAMYLTPEYNIKQWQQRNLPA 47 (83)
T ss_dssp ETTCBCCGGGTSGGGEECCCTTSSCCC
T ss_pred ccCCCCCHHHcCCceEcCCHhHCCCCc
Confidence 4566666 999999999999999875
No 162
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=53.36 E-value=14 Score=27.20 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=24.4
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++...+++++||++.++...+.
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 82 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISL 82 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35788999999999999999988776554
No 163
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=53.26 E-value=2.8 Score=35.27 Aligned_cols=22 Identities=32% Similarity=0.126 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+.++|+...|+|.+||||.++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5689999999999999999885
No 164
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=52.81 E-value=2.9 Score=35.23 Aligned_cols=23 Identities=17% Similarity=-0.141 Sum_probs=0.0
Q ss_pred ccchhhhhcccccccchhHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.++|+...|+|.+||||.++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999885
No 165
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=52.72 E-value=12 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=24.7
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..+++|++||++.+..-.+.
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45788999999999999999988876654
No 166
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.52 E-value=11 Score=27.42 Aligned_cols=30 Identities=3% Similarity=0.019 Sum_probs=25.3
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+...++..+++|++||++.+....+.
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 346788999999999999999988876654
No 167
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=52.44 E-value=8.3 Score=29.43 Aligned_cols=45 Identities=7% Similarity=0.014 Sum_probs=31.2
Q ss_pred cchHHH-HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEE-KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE-~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.++..+ .+..+|+....+.+..+++..++++++||++.++...+.
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 355544 233333333445788999999999999999988876554
No 168
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=52.43 E-value=3 Score=35.08 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=20.0
Q ss_pred ccchhhhhcccccccchhHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.++|+...|+|.+||||.++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 35789999999999999998863
No 169
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=52.41 E-value=8.3 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHh--cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTIS--HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE~laifL~~la--~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ ...|..++ .+.+..+++...+++++||++.+..-.+.
T Consensus 34 lt~~q--~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 34 LTYTG--YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp CCHHH--HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHH--HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 44444 23334443 35677899999999999999998876554
No 170
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=51.99 E-value=3 Score=35.55 Aligned_cols=22 Identities=14% Similarity=-0.040 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+.++|+...|+|.+||||.++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5789999999999999999885
No 171
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=51.90 E-value=8.6 Score=26.56 Aligned_cols=28 Identities=14% Similarity=-0.101 Sum_probs=24.2
Q ss_pred Cccchhhhhcccccccc-hhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHT-VHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sT-Vsr~f~eVl~A 134 (218)
+.+...++..++++++| |++.++...+.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 57889999999999999 99999776544
No 172
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=51.71 E-value=15 Score=27.01 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=24.6
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..+++|++||++.+....+.
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35688999999999999999988876554
No 173
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.62 E-value=13 Score=26.97 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=25.1
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+...++..+++|++||++.++.-.+.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 346788999999999999999988776554
No 174
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=51.59 E-value=18 Score=26.85 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=24.9
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+..+++..++++++||++.++...+.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 346778899999999999999988876554
No 175
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=51.49 E-value=3.1 Score=35.13 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=0.0
Q ss_pred ccchhhhhcccccccchhHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.++|+...|+|.+||||.++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999963
No 176
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=50.97 E-value=15 Score=26.75 Aligned_cols=26 Identities=4% Similarity=0.102 Sum_probs=23.3
Q ss_pred cchhhhhcccccccchhHHHHHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+..+++..++++++||++.++...+.
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 89999999999999999988876655
No 177
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=50.91 E-value=3.2 Score=35.32 Aligned_cols=23 Identities=17% Similarity=-0.042 Sum_probs=0.0
Q ss_pred ccchhhhhcccccccchhHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.++|+...|+|.+||||.++.
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 35789999999999999999875
No 178
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.80 E-value=14 Score=26.63 Aligned_cols=29 Identities=7% Similarity=0.033 Sum_probs=24.5
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++...++|++||++.++...+.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 45688999999999999999988776554
No 179
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=50.60 E-value=9.5 Score=27.67 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=23.6
Q ss_pred ccchhhhhcccccccchhH----HHHHHHHHHHh
Q 046385 108 LRNRFIKIRFQHSGHTVHR----YFHEVLSAMMK 137 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr----~f~eVl~AI~~ 137 (218)
...+.++..-|++.||||| +|.++|..+..
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa~ 57 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAV 57 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 4678999999999999999 56665665443
No 180
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=50.22 E-value=3.4 Score=34.84 Aligned_cols=22 Identities=23% Similarity=0.034 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+.++|+...|+|.+||||.++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 5689999999999999999875
No 181
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=50.21 E-value=10 Score=27.62 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.++..+. .+......++.+..+++..+++|++||++++..-.+.
T Consensus 35 ~lt~~~~-~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 35 ALTNTQE-HILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp CCCHHHH-HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHH-HHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4555542 2222222344788999999999999999988876544
No 182
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.91 E-value=11 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=22.7
Q ss_pred Cccchhhhhcc-----cccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRF-----QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F-----~~S~sTVsr~f~eVl~A 134 (218)
..+..++...+ ++|.+||+|.++...++
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 45667888888 89999999998876665
No 183
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=49.65 E-value=12 Score=27.92 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=24.6
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..++++++||++.++...+.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 45688999999999999999988876554
No 184
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=49.63 E-value=3.5 Score=34.93 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=0.0
Q ss_pred ccchhhhhcccccccchhHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+.++|+..+|+|.+||||.++
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4678999999999999999997
No 185
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=49.28 E-value=3.5 Score=32.64 Aligned_cols=28 Identities=4% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHhcCccchhhhhcccccccchhHHHHH
Q 046385 103 TISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 103 ~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+..|.+.+.++..+++|.+|+.|++++
T Consensus 154 l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 154 LLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ----------------------------
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4467899999999999999999998864
No 186
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=49.14 E-value=3.6 Score=35.06 Aligned_cols=21 Identities=24% Similarity=0.053 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.++|+..+|+|.+||||.++
T Consensus 14 ti~diA~~agVS~~TVSr~Ln 34 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALK 34 (355)
T ss_dssp ---------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHC
Confidence 568999999999999999997
No 187
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=49.03 E-value=9.4 Score=27.27 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHH--HhcCccchhhhhcccccccchhHHHH
Q 046385 92 TVEEKMAMFLFT--ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 92 sveE~laifL~~--la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...+.++-.|.. ...|.+..+++...|+|.+||+++-+
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 445556655544 46789999999999999999998743
No 188
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=48.68 E-value=17 Score=26.85 Aligned_cols=28 Identities=4% Similarity=-0.100 Sum_probs=23.8
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.+...++...+++++||++.+..-.+.
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5688999999999999999988776554
No 189
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=48.45 E-value=15 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=24.5
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+.+.++..+++|++||++.+....+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45788999999999999999988876544
No 190
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=48.35 E-value=17 Score=27.15 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=24.8
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+..+++..++++++||++.++...+.
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~ 94 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDE 94 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46788999999999999999998876554
No 191
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=46.90 E-value=16 Score=25.85 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=27.4
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhH----HHHHHHHHHHhh
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHR----YFHEVLSAMMKF 138 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr----~f~eVl~AI~~L 138 (218)
...|.-|+. ..++.+++.-|++.||||| .|.++|..+-.|
T Consensus 16 s~iL~~La~-~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~L 59 (83)
T 1zs4_A 16 SALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL 59 (83)
T ss_dssp HHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHh
Confidence 344444444 4678999999999999999 455555554444
No 192
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=46.06 E-value=16 Score=27.19 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=25.0
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+..+++..++++++||++.++...+.
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 91 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDE 91 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 45788999999999999999998876554
No 193
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=45.84 E-value=13 Score=28.14 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=36.3
Q ss_pred ccchhccccCHHHHHHHHHHHHhcCccCC-------CccchHHHHHHHHHHHHh-cCccchhhhhcc----------ccc
Q 046385 59 IFCYDLMRMDKNGFISLCQLFKEKGWLSD-------SKHLTVEEKMAMFLFTIS-HNLRNRFIKIRF----------QHS 120 (218)
Q Consensus 59 ~~~~~~fRM~~~~F~~L~~~L~~~~~~~~-------T~~isveE~laifL~~la-~~~s~r~i~~~F----------~~S 120 (218)
.+.-..|.+++.|+...+...+..+.+.+ ...++.++...|--+... ...+.+.++..+ .+|
T Consensus 45 ~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S 124 (159)
T 2k27_A 45 CDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS 124 (159)
T ss_dssp HHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccC
Confidence 34445566666666666654433221111 112343332222222221 235666666655 478
Q ss_pred ccchhHHHHHH
Q 046385 121 GHTVHRYFHEV 131 (218)
Q Consensus 121 ~sTVsr~f~eV 131 (218)
.+||++++++-
T Consensus 125 ~sTV~r~L~~~ 135 (159)
T 2k27_A 125 VSSINRIIRTK 135 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887753
No 194
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=45.45 E-value=15 Score=29.76 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHh-cCccc--hhhhhcccccccchhHHHHHHH
Q 046385 92 TVEEKMAMFLFTIS-HNLRN--RFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 92 sveE~laifL~~la-~~~s~--r~i~~~F~~S~sTVsr~f~eVl 132 (218)
+..|....+||.+. .+.+. ..++..+++|++||++.++..-
T Consensus 6 ~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 49 (226)
T 2qq9_A 6 ATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME 49 (226)
T ss_dssp HHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667777888875 35555 8999999999999998766543
No 195
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=45.30 E-value=7.1 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.8
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
-..|.+..+++...++|.+||+++-+
T Consensus 21 ~~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 21 KKLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HHTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 46789999999999999999998744
No 196
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=45.17 E-value=11 Score=30.06 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+++-|+-.-+...+..|.+...++..+|.|.++|++++.
T Consensus 35 dL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 35 ELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4566666556667777899999999999999999998753
No 197
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.88 E-value=7.1 Score=30.79 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..|. -.|..++.|.++..++...++|..||..++..+.+.
T Consensus 160 Lt~rE~--~vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 160 LTKREQ--QIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp SCHHHH--HHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHH--HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 555553 456668899999999999999999999999887554
No 198
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=44.29 E-value=13 Score=30.61 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHHHH
Q 046385 95 EKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 95 E~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+|..-.|..++. +.+..+++...+++++|++|+++...+.
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~ 50 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEK 50 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 333334444443 4788999999999999999999875554
No 199
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=43.96 E-value=28 Score=29.34 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=37.8
Q ss_pred cCHHHHHHHHHHHHhcC-ccCC----Cc--cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 67 MDKNGFISLCQLFKEKG-WLSD----SK--HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 67 M~~~~F~~L~~~L~~~~-~~~~----T~--~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+++.|+...+...+... .+.+ .+ .++. +++.-.+ .--...+.+.++..+++|.+||+|++++
T Consensus 41 vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~~v-~~~~~~t~~~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 41 PTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQALL-DEDDAQTQKQLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp CCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHHHH-HHCSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHHHH-HhCccchHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877765411 1111 11 2333 2222211 2234467788999999999999998876
No 200
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=43.74 E-value=17 Score=29.24 Aligned_cols=40 Identities=3% Similarity=-0.056 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
+|-.|+. ++...|++.++...++|.+|||+.+.+.=+.+-
T Consensus 8 ~l~~f~~-v~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg 47 (306)
T 3fzv_A 8 QLKYFVT-TVECGSVAEASRKLYIAQPSISTAVKGLEESFG 47 (306)
T ss_dssp HHHHHHH-HHHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-
T ss_pred HHHHHHH-HHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 3445544 444458999999999999999988877655544
No 201
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=43.34 E-value=9.3 Score=27.10 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+-++.-+|-..|- |.++..++..-|+|++|+|.+++
T Consensus 19 ~~~~~~kLK~il~----GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 19 HTTVRNALKDLLK----DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHHHHHHT----TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----hcCHHHHHHHcCCCHHHHHHHHc
Confidence 3445555444433 99999999999999999998876
No 202
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.28 E-value=5.6 Score=24.87 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=21.9
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4678889999999999999999865
No 203
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=42.98 E-value=18 Score=27.37 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=30.1
Q ss_pred chHHH-HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+...|+. ..+.+..+++...+++++||++.++.-.+.
T Consensus 43 lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 43 ITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 44444 33333333 346788999999999999999988776554
No 204
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=42.78 E-value=16 Score=30.16 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=34.6
Q ss_pred ccchHHHHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHHHH
Q 046385 89 KHLTVEEKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 89 ~~isveE~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+-++..-.|..++. +.+..+++...+++++|++|+++...+.
T Consensus 8 ~~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~ 56 (257)
T 2g7u_A 8 DYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKL 56 (257)
T ss_dssp CCCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346566666666666653 4688999999999999999998865553
No 205
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=42.24 E-value=17 Score=28.32 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.6
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++..++++++|||+.++...+.
T Consensus 56 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 84 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRLVANLEKN 84 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46888999999999999999988766543
No 206
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=41.68 E-value=13 Score=30.53 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+-++..-.|..++. +.+..+++...+++++|++|+++...+.
T Consensus 4 sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~ 48 (241)
T 2xrn_A 4 VIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE 48 (241)
T ss_dssp HHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444445555543 4678999999999999999998866544
No 207
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=41.23 E-value=14 Score=27.41 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhccc----ccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTISHNLRNRFIKIRFQ----HSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la~~~s~r~i~~~F~----~S~sTVsr~f~eVl~A 134 (218)
.+..+..+||-...+.+.++++..++ ++.+||++.+....+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k 55 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK 55 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHC
Confidence 34455556665434678899999997 7999999988876554
No 208
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=40.94 E-value=31 Score=27.42 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=30.9
Q ss_pred chHHH-HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+..+|+.- .+.+...++..++++++||++.+....+.
T Consensus 46 Lt~~q~~iL~~L~~~-~~~t~~eLa~~l~i~~stvs~~l~~Le~~ 89 (207)
T 2fxa_A 46 LNINEHHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLEER 89 (207)
T ss_dssp CCHHHHHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 44444 333444433 47889999999999999999988876554
No 209
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=40.70 E-value=11 Score=25.04 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=19.4
Q ss_pred ccchhhhhcccccccchhHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYF 128 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f 128 (218)
.++..++...++|.+|||+.+
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999976
No 210
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=40.47 E-value=7.5 Score=25.82 Aligned_cols=24 Identities=0% Similarity=-0.040 Sum_probs=21.2
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.| +...++...|+|.+|||++.+.
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 46 8999999999999999998764
No 211
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=40.01 E-value=17 Score=31.01 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=24.6
Q ss_pred HHhcCccchhhhhcccccccchhHHHHHH
Q 046385 103 TISHNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 103 ~la~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
+.-.+.+.++++..|++|.+||+|-+.+.
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34456899999999999999999988764
No 212
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=39.64 E-value=18 Score=29.89 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=52.2
Q ss_pred cccHHHHHHHHHh-C-CcccchhccccCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHHHhcCccchhhhhccccc
Q 046385 43 SLTGSLYIQELLN-G-SPIFCYDLMRMDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFTISHNLRNRFIKIRFQHS 120 (218)
Q Consensus 43 ~l~G~~~v~ell~-~-~~~~~~~~fRM~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~la~~~s~r~i~~~F~~S 120 (218)
+..|+..+.-... | ..-.|. ..-++.+.-..+ .|.++.. ...+++.|+...+...+..|.+...++..+|.|
T Consensus 74 Ii~G~rR~~Aa~~lg~~~Ip~i-v~~~~d~ea~~~--~l~eN~~---R~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s 147 (230)
T 1vz0_A 74 LVAGERRYRAALMAGLQEVPAV-VKDLTDREALEL--ALVENLQ---REDLSPVEEARGYQALLEMGLTQEEVARRVGKA 147 (230)
T ss_dssp EEECHHHHHHHHHHTCSEEEEE-ECCCCHHHHHHH--HHHHHHH---STTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred EEeCHHHHHHHHHcCCceeeEE-EEeCCHHHHHHH--HHHHHhc---cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcC
Confidence 4577777644432 3 222332 223555433222 2333321 234666666555666668899999999999999
Q ss_pred ccchhHHHH------HHHHHHH
Q 046385 121 GHTVHRYFH------EVLSAMM 136 (218)
Q Consensus 121 ~sTVsr~f~------eVl~AI~ 136 (218)
.+||+++.. ++.+++-
T Consensus 148 ~~~V~~~l~l~~l~~~v~~~l~ 169 (230)
T 1vz0_A 148 RSTVANALRLLQLPPEALEALE 169 (230)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 999998764 5555554
No 213
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=39.24 E-value=7.1 Score=24.83 Aligned_cols=25 Identities=0% Similarity=-0.039 Sum_probs=21.6
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4678889999999999999998764
No 214
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.10 E-value=38 Score=25.42 Aligned_cols=26 Identities=15% Similarity=-0.050 Sum_probs=18.1
Q ss_pred cchhhhhcc-----cccccchhHHHHHHHHH
Q 046385 109 RNRFIKIRF-----QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 109 s~r~i~~~F-----~~S~sTVsr~f~eVl~A 134 (218)
+-.++.... ++|.+||+|.++...++
T Consensus 39 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 39 TADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp CHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 334444444 78999999988776665
No 215
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=38.98 E-value=7.2 Score=27.53 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.3
Q ss_pred cchhhhhcccccccchhHHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
+.+.++..|++|.+||++.+...
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 56788999999999998877654
No 216
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=38.70 E-value=20 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=25.6
Q ss_pred HHHHHHH--HhcCccchhhhhcccccccchhHHHH
Q 046385 97 MAMFLFT--ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 97 laifL~~--la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
++-.|.. ...|.+..+++...++|.+|||++-+
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 4444433 46789999999999999999998754
No 217
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=38.69 E-value=49 Score=25.89 Aligned_cols=84 Identities=8% Similarity=0.050 Sum_probs=54.6
Q ss_pred cHHHHHHHHHhCCcccchhccccCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHH----HhcCccchhhhhccccc
Q 046385 45 TGSLYIQELLNGSPIFCYDLMRMDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFT----ISHNLRNRFIKIRFQHS 120 (218)
Q Consensus 45 ~G~~~v~ell~~~~~~~~~~fRM~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~----la~~~s~r~i~~~F~~S 120 (218)
.|..+++++- +.+++.+.+-..=..+++.-........-+.+.-.+..||. .+..-+.+++++.++++
T Consensus 11 ~a~~~I~~~~--------~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~ 82 (200)
T 1ais_B 11 FALSELDRIT--------AQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 82 (200)
T ss_dssp HHHHHHHHHH--------HHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCC
Confidence 4555555444 46777777666555555543323333444555555555554 45667889999999999
Q ss_pred ccchhHHHHHHHHHHH
Q 046385 121 GHTVHRYFHEVLSAMM 136 (218)
Q Consensus 121 ~sTVsr~f~eVl~AI~ 136 (218)
..+|.+.+..+++.+-
T Consensus 83 ~~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 83 KKEIGRSYRFIARNLN 98 (200)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998887753
No 218
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=38.66 E-value=18 Score=25.92 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHH--HhcCccchhhhhcccccccchhHH
Q 046385 92 TVEEKMAMFLFT--ISHNLRNRFIKIRFQHSGHTVHRY 127 (218)
Q Consensus 92 sveE~laifL~~--la~~~s~r~i~~~F~~S~sTVsr~ 127 (218)
...+.++--|.. ...|.+..+++..-|+|.+||+++
T Consensus 32 ~l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 32 ALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHH
Confidence 344555555544 478899999999999999999976
No 219
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=38.51 E-value=23 Score=29.65 Aligned_cols=48 Identities=8% Similarity=0.033 Sum_probs=34.6
Q ss_pred CCccchHHHHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHHHH
Q 046385 87 DSKHLTVEEKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 87 ~T~~isveE~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+...+++-+|..--|..++. +.+..+++...+++++|++|++....+.
T Consensus 22 ~~~~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~ 72 (275)
T 3mq0_A 22 ISDTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL 72 (275)
T ss_dssp GGGGHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33467777777777777764 3678999999999999999998766554
No 220
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=38.34 E-value=23 Score=27.79 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHHHH
Q 046385 92 TVEEKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 92 sveE~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
...++..--|..|.. ..+...++..|++|..||.|.+...-++
T Consensus 18 ~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 18 VRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 334444445555542 3678899999999999999999866553
No 221
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=38.05 E-value=14 Score=29.91 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=22.9
Q ss_pred ccchhhhhcccccccchhHHHHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
.++..++...++|++|||+.+.+.-+
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45899999999999999999887766
No 222
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=37.70 E-value=19 Score=23.16 Aligned_cols=26 Identities=0% Similarity=-0.175 Sum_probs=22.6
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+||+++.+
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 20 TQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 35688999999999999999999865
No 223
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=37.54 E-value=23 Score=27.67 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcC---ccchhhhhccc-ccccchhHHHHHHHHH
Q 046385 94 EEKMAMFLFTISHN---LRNRFIKIRFQ-HSGHTVHRYFHEVLSA 134 (218)
Q Consensus 94 eE~laifL~~la~~---~s~r~i~~~F~-~S~sTVsr~f~eVl~A 134 (218)
..|.+|.-..+++. .+-..+...++ +|..||+++++...++
T Consensus 29 ~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~ea 73 (151)
T 3u1d_A 29 ETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDR 73 (151)
T ss_dssp HHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 35566666666654 34456666777 9999999999887776
No 224
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=37.36 E-value=29 Score=25.93 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=24.8
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.+++-.+.
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4788999999999999999999887665
No 225
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=37.02 E-value=10 Score=23.92 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=22.0
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+||+++.+
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35678889999999999999998754
No 226
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=36.74 E-value=34 Score=28.59 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=36.0
Q ss_pred CccchHHHHHHHHHHHHhcCccchhhhhcc-cccccchhHHHHHHHH
Q 046385 88 SKHLTVEEKMAMFLFTISHNLRNRFIKIRF-QHSGHTVHRYFHEVLS 133 (218)
Q Consensus 88 T~~isveE~laifL~~la~~~s~r~i~~~F-~~S~sTVsr~f~eVl~ 133 (218)
+..+....+++++|--=-++.++.+++..| +++.+||...++.+-+
T Consensus 254 ~~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g~~~~~tv~~~~~~~~~ 300 (324)
T 1l8q_A 254 NKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEE 300 (324)
T ss_dssp CSSSHHHHHHHHHHHHHHHCCCHHHHHHHSSCCCSTHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 446778888999874333358999999999 7999999888777644
No 227
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=36.65 E-value=31 Score=25.72 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.2
Q ss_pred ccchhhhhcccccccchhHHHHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
.+..+++...+++++||++.++.-.+
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 57899999999999999999987543
No 228
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=36.59 E-value=7.8 Score=24.31 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=21.6
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4577889999999999999998865
No 229
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=36.54 E-value=20 Score=25.60 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCccchhhhhccc----ccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTISHNLRNRFIKIRFQ----HSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la~~~s~r~i~~~F~----~S~sTVsr~f~eVl~A 134 (218)
.+..+..+||-- .+.+.++++..++ ++.+||++.+..-.+.
T Consensus 11 ~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k 55 (126)
T 1sd4_A 11 AEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKK 55 (126)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Confidence 445666777764 4688899999997 5899999888876554
No 230
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=36.42 E-value=20 Score=25.30 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHHH-h-cCccchhhhhcccccccchhHHHHHHHHHHHhhhhhhcC-CCCCC
Q 046385 90 HLTVEEKMAMFLFTI-S-HNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMKFSKEMIT-PPSFT 149 (218)
Q Consensus 90 ~isveE~laifL~~l-a-~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~L~~~~Ik-~P~~~ 149 (218)
.++.++.+.+-+-.- + .|.+.++++...+++..||++++..... +.||+ .++..
T Consensus 17 ~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~------kglIkr~~~~~ 73 (91)
T 2dk5_A 17 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES------KKLIKAVKSVA 73 (91)
T ss_dssp CSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH------TTSEEEECCSS
T ss_pred CCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH------CCCEEEecCCC
Confidence 555555332222222 2 2788999999999999999888776533 57776 45543
No 231
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=36.37 E-value=25 Score=26.23 Aligned_cols=28 Identities=14% Similarity=-0.037 Sum_probs=24.8
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.+++-.+.
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4788999999999999999999887665
No 232
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=36.37 E-value=19 Score=29.91 Aligned_cols=45 Identities=7% Similarity=0.016 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+-++..--|..++. +.+..+++...+++++|++|+++...+.
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~ 63 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL 63 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46566666556666653 4678999999999999999998876554
No 233
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=36.34 E-value=25 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=24.3
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.+++-.+.
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4688999999999999999998877654
No 234
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=36.19 E-value=8.6 Score=29.34 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.3
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
-.+.|.++|+..-|+|+.|+.+||..
T Consensus 30 ~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 30 FHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cccccHHHHHHHhCCChHHHHHHCCC
Confidence 35678899999999999999998753
No 235
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=35.25 E-value=22 Score=27.03 Aligned_cols=40 Identities=5% Similarity=-0.093 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
++.+|+...-+ .|++.++...++|.++||+.+.+.=+.+-
T Consensus 28 ~L~~f~av~e~-gS~s~AA~~L~iSqsavS~~I~~LE~~lG 67 (135)
T 2ijl_A 28 KVELMQLIAET-GSISAAGRAMDMSYRRAWLLVDALNHMFR 67 (135)
T ss_dssp HHHHHHHHHHH-SCHHHHHHHTTCCHHHHHHHHHHHHHHBS
T ss_pred HHHHHHHHHHh-CCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45566555555 48999999999999999999988766543
No 236
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=35.21 E-value=23 Score=23.22 Aligned_cols=26 Identities=0% Similarity=-0.013 Sum_probs=22.5
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+||+++-+
T Consensus 21 ~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 21 LEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 36788999999999999999998765
No 237
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=35.17 E-value=26 Score=27.98 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
+|-.|+-.. ...|++.++...++|++|||+.+++.=+
T Consensus 5 ~l~~f~~v~-~~gs~s~AA~~L~isq~avS~~i~~LE~ 41 (294)
T 1ixc_A 5 QLKYFIAVA-EAGNMAAAAKRLHVSQPPITRQMQALEA 41 (294)
T ss_dssp HHHHHHHHH-HHSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344444444 4448889999999999999977665433
No 238
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=35.15 E-value=11 Score=25.07 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=22.3
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 5678899999999999999999876
No 239
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=35.05 E-value=21 Score=25.21 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=26.7
Q ss_pred HHHHh-cCccchhhhhcc-cccccchhHHHHHHHHH
Q 046385 101 LFTIS-HNLRNRFIKIRF-QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 101 L~~la-~~~s~r~i~~~F-~~S~sTVsr~f~eVl~A 134 (218)
|+.|. ...++.+++... ++|.+|+++.+++--++
T Consensus 20 L~~L~~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 20 LXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp HHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 34444 347889999999 99999999998876655
No 240
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.04 E-value=34 Score=25.45 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=24.5
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.+++..+.
T Consensus 23 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 23 RLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4788999999999999999998887655
No 241
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.03 E-value=9 Score=25.44 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.0
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+...++...|+|.+|||++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 5688899999999999999998754
No 242
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=34.84 E-value=23 Score=25.38 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHhcC-cc--chhhhhcc-cccccchhHHHHHHHHH
Q 046385 100 FLFTISHN-LR--NRFIKIRF-QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 100 fL~~la~~-~s--~r~i~~~F-~~S~sTVsr~f~eVl~A 134 (218)
-|+.|+.| .+ +..++... ++|.+|+|+++++.-++
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 34555554 45 89999999 99999999999887666
No 243
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=34.64 E-value=38 Score=26.51 Aligned_cols=23 Identities=4% Similarity=-0.034 Sum_probs=20.5
Q ss_pred CccchhhhhcccccccchhHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.+...++...|+|.+|+.+..+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 67899999999999999999555
No 244
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=34.35 E-value=30 Score=24.20 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=20.7
Q ss_pred hcCccchhhhhcccccccchhHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
..+.+..+++..+++|..+++|.|++.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344566678888888888888888776
No 245
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=34.25 E-value=9.4 Score=24.72 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=22.7
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
..|.+..+++...|+|.+||+++.+.
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 56888999999999999999998763
No 246
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=34.18 E-value=10 Score=24.21 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=22.0
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 5678899999999999999998864
No 247
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=34.02 E-value=10 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.4
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5678889999999999999998754
No 248
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=33.91 E-value=21 Score=23.99 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=26.7
Q ss_pred HHHHHHHH--HHhcCccchhhhhcccccccchhHHHH
Q 046385 95 EKMAMFLF--TISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 95 E~laifL~--~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
++++-.|. ....|.+..+++...|+|.+||+++.+
T Consensus 16 ~~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 16 RRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34444442 246788999999999999999999865
No 249
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=33.88 E-value=33 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.3
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.++...+.
T Consensus 19 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 19 RLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4688999999999999999998877655
No 250
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=33.62 E-value=15 Score=24.61 Aligned_cols=26 Identities=8% Similarity=-0.075 Sum_probs=22.7
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+|||++.+
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45678899999999999999999875
No 251
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=33.59 E-value=35 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=24.8
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.+++..+.
T Consensus 22 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 22 RTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4688999999999999999999887766
No 252
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=33.38 E-value=9.7 Score=25.41 Aligned_cols=21 Identities=5% Similarity=0.006 Sum_probs=19.8
Q ss_pred cchhhhhcccccccchhHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~ 129 (218)
++..++...++|.++||+.++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999974
No 253
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.34 E-value=20 Score=28.89 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHH
Q 046385 94 EEKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 94 eE~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
+|.-.-.+|.+.. +.+..+++..+++|++||++.++..-
T Consensus 4 ~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 4455556666643 46778999999999999998776543
No 254
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=33.23 E-value=21 Score=29.60 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHHh---cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 90 HLTVEEKMAMFLFTIS---HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 90 ~isveE~laifL~~la---~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+..-+|..-.|..++ .+.+..+++...+++++|++|+++...+.
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~ 65 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCAR 65 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4666666666666665 35788999999999999999998865543
No 255
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=33.14 E-value=33 Score=21.55 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=21.7
Q ss_pred hcCccchhhhhccc--ccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQ--HSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~--~S~sTVsr~f~ 129 (218)
..|.+..+++...+ +|.+||+++-+
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 56788899999999 99999998865
No 256
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=33.10 E-value=11 Score=29.37 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=24.8
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
||-+ +..|.+.+.++..+++|.+||.++..
T Consensus 151 i~~~-~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 151 VLNM-WQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHH-HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHH-HHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4443 35789999999999999999999875
No 257
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=32.67 E-value=18 Score=28.85 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.9
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
..|.+.+.++..+++|.+||.|++.+
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 47899999999999999999988653
No 258
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.48 E-value=9.4 Score=24.58 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=21.6
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4578889999999999999998765
No 259
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=32.32 E-value=34 Score=26.87 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=22.1
Q ss_pred CccchhhhhcccccccchhHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
..|.+.++..|++|.+||+++++.-.+
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 468999999999999998887765443
No 260
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=32.27 E-value=23 Score=29.33 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=25.9
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
....+...++..+++|.+|||++++.-.++
T Consensus 23 ~g~~s~~ELa~~lglS~stVs~hL~~Le~a 52 (232)
T 2qlz_A 23 CMECYFSLLSSKVSVSSTAVAKHLKIMERE 52 (232)
T ss_dssp TTTTCSSSSCTTCCCCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345777899999999999999999987776
No 261
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=32.11 E-value=32 Score=23.99 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=20.1
Q ss_pred cCccchhhhhcccccccchhHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
.+.+..+++..+++|..+++|.|++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455678888888888888888876
No 262
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=32.07 E-value=11 Score=24.32 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.8
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4678889999999999999998865
No 263
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=31.98 E-value=22 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHhcC----ccchhhhhccc---ccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHN----LRNRFIKIRFQ---HSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~----~s~r~i~~~F~---~S~sTVsr~f~eVl~AI~ 136 (218)
+|..|. -.|..++.| .|+..++.... +|..||..++.++.+.+-
T Consensus 146 Lt~rE~--~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 146 LPKKEF--EILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCHHHH--HHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred cCHHHH--HHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 566663 346677777 89999999998 999999999998877753
No 264
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=31.83 E-value=20 Score=24.11 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=22.1
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+...++..-|+|.+||+++..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 6688999999999999999998754
No 265
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.67 E-value=23 Score=27.12 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+.+|.-.- .+.|.++|+..-|+|+.|+.+||.
T Consensus 29 A~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 29 ATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 344555666 889999999999999999999986
No 266
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=31.65 E-value=27 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.4
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.+.+..+.
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3688999999999999999999887665
No 267
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=31.55 E-value=24 Score=26.38 Aligned_cols=32 Identities=3% Similarity=-0.078 Sum_probs=26.2
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|...-=.+.|.++|+..-|+|+.|+.+||.
T Consensus 18 ~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 49 (178)
T 4hku_A 18 KIIYEKGMEKTTLYDIASNLNVTHAALYKHYR 49 (178)
T ss_dssp HHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCS
T ss_pred HHHHHhCcccccHHHHHHHhCcCHhHHHHHCC
Confidence 34555555678999999999999999999875
No 268
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=31.55 E-value=36 Score=24.57 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhc-----CccchhhhhcccccccchhHHHHHH
Q 046385 92 TVEEKMAMFLFTISH-----NLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 92 sveE~laifL~~la~-----~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
+.|.++|-+ ++.+ ..+.+.++..-++|.+||.|..+..
T Consensus 17 ~~e~~ia~y--il~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 17 KNEKKIAQF--ILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHHHHHHHH--HHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 345555554 4444 5788999999999999999986655
No 269
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=31.09 E-value=38 Score=24.25 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHh-----cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTIS-----HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la-----~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+.-.+...|+.++ ...++..++.+-+++.+|++|.+...-++
T Consensus 17 ~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~ 63 (96)
T 2obp_A 17 AIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAA 63 (96)
T ss_dssp HHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHC
Confidence 3444555677773 34689999999999999999998876554
No 270
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=30.94 E-value=39 Score=23.99 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=25.4
Q ss_pred cCccchhhhhcc-cccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRF-QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F-~~S~sTVsr~f~eVl~A 134 (218)
.+.++..++... ++|.+|+++.+++-.++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 457889999999 99999999999877665
No 271
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=30.78 E-value=28 Score=29.26 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCccchhhhhc----cc---ccccchhHHHHHHH
Q 046385 93 VEEKMAMFLFTISHNLRNRFIKIR----FQ---HSGHTVHRYFHEVL 132 (218)
Q Consensus 93 veE~laifL~~la~~~s~r~i~~~----F~---~S~sTVsr~f~eVl 132 (218)
-.+.-++.++.+..|.+.+.++.. || +|.+||.+.++...
T Consensus 8 ~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~ 54 (345)
T 3hot_A 8 KEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFK 54 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence 344456677777788888766666 55 99999999988653
No 272
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=30.72 E-value=28 Score=25.85 Aligned_cols=28 Identities=7% Similarity=-0.046 Sum_probs=24.4
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.++.-.++
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3688999999999999999999877665
No 273
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=30.61 E-value=37 Score=27.16 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAM 135 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI 135 (218)
|-.|+. ++...|++.++...++|++|||+.+.+.=+.+
T Consensus 8 l~~f~~-v~~~gs~t~AA~~L~isq~avS~~i~~LE~~l 45 (306)
T 3hhg_A 8 LTVFVQ-VVESGSFSRAAEQLAMANSAVSRIVKRLEEKL 45 (306)
T ss_dssp HHHHHH-HHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 444443 44555889999999999999997766554433
No 274
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=30.59 E-value=11 Score=24.63 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=21.9
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+||+++.+
T Consensus 12 ~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 12 IRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35678889999999999999998754
No 275
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=30.46 E-value=23 Score=27.42 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=16.6
Q ss_pred chhhhhcc-----cccccchhHHHHHH
Q 046385 110 NRFIKIRF-----QHSGHTVHRYFHEV 131 (218)
Q Consensus 110 ~r~i~~~F-----~~S~sTVsr~f~eV 131 (218)
...++..+ .+|.+||||-+++.
T Consensus 22 q~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 22 QDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 34555555 99999999998864
No 276
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=30.31 E-value=54 Score=27.17 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=30.8
Q ss_pred chHHH-HHHHHHHHHhc-CccchhhhhcccccccchhHHHHHHHHH
Q 046385 91 LTVEE-KMAMFLFTISH-NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 91 isveE-~laifL~~la~-~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
++..+ .+..+|+.-+. +.+..+++...+++++||++.+..-.+.
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 45444 33344433322 3688999999999999999999876655
No 277
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=29.61 E-value=32 Score=26.64 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHhcC----ccchhhhhccc-----ccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHN----LRNRFIKIRFQ-----HSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~----~s~r~i~~~F~-----~S~sTVsr~f~eVl~AI~ 136 (218)
+|..|. -.|..++.| .|+..++.... +|..||..++..+.+.+-
T Consensus 144 Lt~rE~--~vL~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~ 196 (223)
T 2hqr_A 144 VKGKPF--EVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMD 196 (223)
T ss_dssp CCSTTT--HHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHH
T ss_pred cCHHHH--HHHHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHh
Confidence 444443 346777778 89999999988 999999999999888765
No 278
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=29.31 E-value=15 Score=25.01 Aligned_cols=38 Identities=11% Similarity=-0.038 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.++.++|.-. .-..|.+..+++...|+|.+||+++.+.
T Consensus 7 ~~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 7 PRPGDIIQES--LDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CCHHHHHHHH--HHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CChhHHHHHH--HHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3445555433 3355788999999999999999998763
No 279
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.28 E-value=9.1 Score=24.67 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=18.9
Q ss_pred ccchhhhhcccccccchhHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYF 128 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f 128 (218)
.+...++...|+|.+|||++.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 478999999999999999984
No 280
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=29.26 E-value=17 Score=32.38 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=30.5
Q ss_pred cchHHH-HHHHHHHHH-hcCccchhhhhcccccccchhHHHHHHHH
Q 046385 90 HLTVEE-KMAMFLFTI-SHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 90 ~isveE-~laifL~~l-a~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
.++..+ .+...|+.- ..+.+...++.+.+++++||+|++.+..+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466665 233333321 03478899999999999999999887554
No 281
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=29.23 E-value=33 Score=22.65 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.++--|..+-...+..+++..-|+|.+||+++-+
T Consensus 16 ~~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 3455555554445788999999999999998764
No 282
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=29.18 E-value=22 Score=26.24 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.+|.-.--.+.|.++|+..-|+|+.|+.+||.
T Consensus 20 ~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 20 EALIQKDGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 334444445678999999999999999999875
No 283
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=29.08 E-value=33 Score=27.71 Aligned_cols=35 Identities=6% Similarity=-0.014 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
|-.|+- ++...|++.++...++|++|||+.+++.=
T Consensus 15 L~~f~~-v~~~gs~s~AA~~L~isq~avS~~I~~LE 49 (310)
T 2esn_A 15 LLVFDA-LYRHRNVGTAASELAISASAFSHALGRLR 49 (310)
T ss_dssp HHHHHH-HHHHSSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHcCCHHHHHHHhCCChHHHHHHHHHHH
Confidence 444443 34444888888888888888887666543
No 284
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=28.72 E-value=30 Score=26.72 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=29.6
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH---HHHHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH---EVLSAMM 136 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~---eVl~AI~ 136 (218)
.+|.-.-=++.|.++|+..-|+|+.|+.+||. +.+.+++
T Consensus 20 ~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~F~sKe~L~~~~~ 61 (215)
T 1ui5_A 20 DLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAIL 61 (215)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHhCcccCCHHHHHHHhCCCchhhHhhCCCHHHHHHHHH
Confidence 34444444678999999999999999999987 5555554
No 285
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=28.68 E-value=21 Score=28.31 Aligned_cols=42 Identities=5% Similarity=-0.042 Sum_probs=31.0
Q ss_pred HHhcCccchhhhhcccccccchhHHHHHHHHHHHhhhhhhcC
Q 046385 103 TISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMKFSKEMIT 144 (218)
Q Consensus 103 ~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~L~~~~Ik 144 (218)
.++...+.++++..++++..||.+..++..+.+-.+.+++++
T Consensus 155 ~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~~ 196 (207)
T 1c9b_A 155 ASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFK 196 (207)
T ss_dssp TSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSCC
T ss_pred HHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHHc
Confidence 344556678999999999999999988888776544344443
No 286
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=28.65 E-value=19 Score=25.77 Aligned_cols=24 Identities=8% Similarity=-0.027 Sum_probs=19.2
Q ss_pred cchhhhhcccccccchhHHHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
+.+.++..|++|..||.+.+....
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 557789999999999987666543
No 287
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=28.55 E-value=34 Score=26.53 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHhcC----ccchhhhhccc-----ccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHN----LRNRFIKIRFQ-----HSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~----~s~r~i~~~F~-----~S~sTVsr~f~eVl~AI~ 136 (218)
+|..| .-.|..++.| .|+.+++.... +|..||..++..+.+-+-
T Consensus 160 Lt~rE--~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 212 (233)
T 1ys7_A 160 LTKRE--FDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLE 212 (233)
T ss_dssp CCHHH--HHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH
T ss_pred cCHHH--HHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhc
Confidence 34444 3456777788 89999998887 999999999998888764
No 288
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=28.45 E-value=12 Score=29.53 Aligned_cols=31 Identities=3% Similarity=0.102 Sum_probs=0.0
Q ss_pred HhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+..|.+.+.++..+++|.+|+.|++++.-.+
T Consensus 155 ~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 155 LAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -------------------------------
T ss_pred HHCCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 4578999999999999999999998764443
No 289
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=28.44 E-value=14 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=20.9
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...++|.+||+++.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4567888899999999999998754
No 290
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=28.41 E-value=13 Score=24.53 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=22.3
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+||+++-+
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 24 SAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35688999999999999999998754
No 291
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=28.22 E-value=37 Score=26.76 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=31.6
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHHHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAM 135 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI 135 (218)
-.+..++.|.++..++..+++|.+||..++..++.-+
T Consensus 205 ~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~~kl 241 (258)
T 3p7n_A 205 EVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKL 241 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4455677899999999999999999999998887654
No 292
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=28.18 E-value=25 Score=25.14 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCccchhhhhccc----ccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTISHNLRNRFIKIRFQ----HSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la~~~s~r~i~~~F~----~S~sTVsr~f~eVl~A 134 (218)
.+..+..+||. ..+.+.++++..++ ++.+||++.+....+.
T Consensus 36 ~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K 80 (99)
T 2k4b_A 36 AELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKK 80 (99)
T ss_dssp SCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC
Confidence 45567778887 34788899999986 4688998888765543
No 293
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=27.98 E-value=38 Score=28.10 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=43.5
Q ss_pred CcccchhccccCHHHHHHHHHHHHhcCccCCCccchHHH-HHHHHHHHHh-cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 57 SPIFCYDLMRMDKNGFISLCQLFKEKGWLSDSKHLTVEE-KMAMFLFTIS-HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 57 ~~~~~~~~fRM~~~~F~~L~~~L~~~~~~~~T~~isveE-~laifL~~la-~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+-+.|...++.++.... +...+.... .++..+ .+..+||.-+ .+.+..+++....++.+|+++.++.--+.
T Consensus 5 ~~~~~~~l~~~~~~~~~-~~~~~l~~~------~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~ 77 (250)
T 1p4x_A 5 NHDKIRDFIIIEAYMFR-FKKKVKPEV------DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKH 77 (250)
T ss_dssp CCSHHHHHHHHHHHHHH-HHHHHTTTC------SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHhhhc------CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 34567777776653333 333332222 355554 3444555432 35789999999999999999888765443
No 294
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.85 E-value=20 Score=24.69 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=20.4
Q ss_pred ccchhhhhcccccccchhHHHHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
.+..+++..|++|.+||-|-+.+--+
T Consensus 17 vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 17 MEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55578999999999999877765433
No 295
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=27.85 E-value=30 Score=27.54 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=25.3
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
...+...++..+++|.+||++++..--++
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45788999999999999999999887665
No 296
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.85 E-value=24 Score=23.37 Aligned_cols=29 Identities=0% Similarity=-0.112 Sum_probs=24.1
Q ss_pred HHHhcCccchhhhhcccccccchhHHHHH
Q 046385 102 FTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 102 ~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+-...|.+..+++...++|.+||+++-+.
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34567888999999999999999998764
No 297
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=27.77 E-value=38 Score=23.60 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=18.8
Q ss_pred CccchhhhhcccccccchhHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
..+..+++..+++|.++++|.|++.
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445667888888888888888776
No 298
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=27.60 E-value=30 Score=29.68 Aligned_cols=34 Identities=3% Similarity=0.039 Sum_probs=25.3
Q ss_pred HHHHhcC--ccchhhhhcccccccchhHHHHHHHHH
Q 046385 101 LFTISHN--LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 101 L~~la~~--~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
|..|..+ .+...++..|++|..||.|.+...-++
T Consensus 11 l~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 11 IALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp HHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4444443 455789999999999999999876553
No 299
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=27.49 E-value=32 Score=25.51 Aligned_cols=33 Identities=12% Similarity=-0.085 Sum_probs=25.9
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
+|.-.--.+.+.++|+..-|+|+.|+.+||..=
T Consensus 20 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (206)
T 3dew_A 20 LFAQKGFYGVSIRELAQAAGASISMISYHFGGK 52 (206)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHH
T ss_pred HHhcCCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 344444457899999999999999999998543
No 300
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=27.48 E-value=30 Score=25.05 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhc-----CccchhhhhcccccccchhHHHHHH
Q 046385 92 TVEEKMAMFLFTISH-----NLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 92 sveE~laifL~~la~-----~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
+.|.++| -|++.+ ..+.+.++..-++|.+||.|..+..
T Consensus 21 ~~e~~ia--~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 21 PSERKLA--DYILAHPHXAIESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp HHHHHHH--HHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3444444 455554 6788999999999999999975543
No 301
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=27.39 E-value=16 Score=25.41 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=21.9
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+...++...++|.+||+++-+
T Consensus 40 ~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 40 RALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 34688899999999999999998743
No 302
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=27.36 E-value=27 Score=26.08 Aligned_cols=31 Identities=6% Similarity=-0.103 Sum_probs=25.1
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|...--++.|.++|+..-|+|+.|+.++|.
T Consensus 19 lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 19 LFSEKGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp HHHHHCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHcCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 3444444678999999999999999999985
No 303
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=27.24 E-value=57 Score=24.67 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=24.8
Q ss_pred HhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
-+...+.+.++..|++|.+||.+.+......
T Consensus 24 ~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~ 54 (163)
T 2gqq_A 24 KDGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3455688999999999999998887765444
No 304
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=27.22 E-value=29 Score=26.45 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=25.8
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|...-=.+.|.++|+..-|+|+.|+.+||.
T Consensus 23 ~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 23 AAFISKGYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 34444444678999999999999999999984
No 305
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=27.19 E-value=37 Score=23.74 Aligned_cols=35 Identities=3% Similarity=0.061 Sum_probs=25.9
Q ss_pred HHHHHHHHH--HhcCccchhhhhcccccccchhHHHH
Q 046385 95 EKMAMFLFT--ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 95 E~laifL~~--la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.++--|.. ...|.+..+++...++|.+||+++-+
T Consensus 27 ~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 27 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 334444433 35788889999999999999998755
No 306
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=27.05 E-value=44 Score=26.98 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+|-.|+- ++...|++.++...++|++|||+.+.+.=+.
T Consensus 6 ~L~~f~~-v~~~gs~t~AA~~L~isq~avS~~i~~LE~~ 43 (305)
T 3fxq_A 6 TLQALIC-IEEVGSLRAAAQLLHLSQPALSAAIQQLEDE 43 (305)
T ss_dssp HHHHHHH-HHHHSCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHcCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3444444 4444588999999999999999776654433
No 307
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.85 E-value=33 Score=26.10 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 96 KMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 96 ~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...+|...-=++.|.++|+..-|+|+.|+.+||.
T Consensus 20 A~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~ 53 (202)
T 2i10_A 20 AMELFWRQGYEGTSITDLTKALGINPPSLYAAFG 53 (202)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhC
Confidence 3445555555789999999999999999999985
No 308
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=26.83 E-value=37 Score=25.00 Aligned_cols=31 Identities=6% Similarity=-0.239 Sum_probs=25.0
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|...--++.|.++|+..-|+|+.|+.+||.
T Consensus 19 l~~~~G~~~~s~~~IA~~agvs~~tly~~F~ 49 (180)
T 2fd5_A 19 ALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ 49 (180)
T ss_dssp HHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS
T ss_pred HHHHhCcccCCHHHHHHHhCCCccHHHHHCC
Confidence 3444444578999999999999999999875
No 309
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=26.70 E-value=49 Score=27.40 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=25.0
Q ss_pred cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
.+.+...++...++|++||+|+++...+.
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~ 193 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKF 193 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46788999999999999999998876654
No 310
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=26.38 E-value=38 Score=24.99 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.8
Q ss_pred cchhhhhcccccccchhHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~e 130 (218)
|-|.++..|++|+.||.+-+..
T Consensus 40 ser~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHH
Confidence 3467889999999999655443
No 311
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.38 E-value=17 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.4
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+..+++...|+|.+||+++-+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 5678889999999999999998754
No 312
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=26.37 E-value=33 Score=25.36 Aligned_cols=30 Identities=13% Similarity=-0.045 Sum_probs=24.0
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
|.-.-=.+.+.++|+..-|+|+.|+.++|.
T Consensus 15 ~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 15 FIKNGYNATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp HHHHTTTTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred HHHcCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 333334668899999999999999999875
No 313
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=26.34 E-value=38 Score=25.08 Aligned_cols=22 Identities=5% Similarity=-0.130 Sum_probs=16.2
Q ss_pred cchhhhhcccccccchhHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~e 130 (218)
|-+.++..|++|+.||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4467789999999998654443
No 314
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=26.27 E-value=15 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 91 LTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 91 isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..+.+++.-. .-..|.+..+++...|+|.+|||++.+
T Consensus 17 ~~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 17 IHPGEVIADI--LDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp CCHHHHHHHH--HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHH--HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4455544322 235688999999999999999999865
No 315
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=26.26 E-value=35 Score=26.80 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=27.7
Q ss_pred HHHHHHHHHh-cCccchhhhhccc-ccccchhHHHHHHHHH
Q 046385 96 KMAMFLFTIS-HNLRNRFIKIRFQ-HSGHTVHRYFHEVLSA 134 (218)
Q Consensus 96 ~laifL~~la-~~~s~r~i~~~F~-~S~sTVsr~f~eVl~A 134 (218)
|+.|. ..|+ ...+-..++..++ +|++|||+|++...++
T Consensus 25 Rl~il-~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 25 RWRIT-QLLIGRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp HHHHH-HHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 44443 3344 4456678889985 9999999999988777
No 316
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=26.19 E-value=51 Score=24.06 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.5
Q ss_pred Cccchhhhhcc--cccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRF--QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F--~~S~sTVsr~f~eVl~A 134 (218)
..+...++..+ ++|..+|++++++..++
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 57788999999 99999999999877666
No 317
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=25.78 E-value=24 Score=26.55 Aligned_cols=33 Identities=21% Similarity=0.061 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.+|...-=.+.|.++|+..-|+|+.|+.+||.
T Consensus 28 ~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 60 (212)
T 3loc_A 28 LDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSS
T ss_pred HHHHHHhCcccCCHHHHHHHHCcCHHHHhhhCC
Confidence 344555555679999999999999999999984
No 318
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.75 E-value=55 Score=22.49 Aligned_cols=25 Identities=8% Similarity=0.111 Sum_probs=20.0
Q ss_pred CccchhhhhcccccccchhHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
..+..+++..+++|..+++|.|++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566778888888888888888877
No 319
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=25.74 E-value=31 Score=27.77 Aligned_cols=30 Identities=7% Similarity=-0.086 Sum_probs=25.8
Q ss_pred hcCccchhhhhcccccccchhHHHHHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..+.+...++..+++|.+|||++++.-.++
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~ 55 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEA 55 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456777999999999999999999887666
No 320
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=25.59 E-value=28 Score=26.32 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.+|...-=++.|.++|+..-|+|+.|+.+||.
T Consensus 20 ~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 52 (194)
T 2nx4_A 20 WRLIAARGIEAANMRDIATEAGYTNGALSHYFA 52 (194)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHhcCcccCCHHHHHHHhCCCcchHHHhCc
Confidence 344555555789999999999999999999874
No 321
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=25.41 E-value=34 Score=25.98 Aligned_cols=31 Identities=10% Similarity=-0.152 Sum_probs=25.0
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 23 lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2xdn_A 23 AFYKRGVARTTLADIAELAGVTRGAIYWHFN 53 (210)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCTTHHHHHCS
T ss_pred HHHHcCcccCcHHHHHHHHCCChHHHHHHhC
Confidence 3444434678999999999999999999875
No 322
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=25.35 E-value=44 Score=25.17 Aligned_cols=31 Identities=6% Similarity=-0.085 Sum_probs=24.8
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 24 lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 54 (197)
T 2hyt_A 24 VFSERGYADTSMDDLTAQASLTRGALYHHFG 54 (197)
T ss_dssp HHHHHCTTTCCHHHHHHHHTCCTTHHHHHHS
T ss_pred HHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3433334678999999999999999999875
No 323
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.91 E-value=19 Score=24.62 Aligned_cols=26 Identities=15% Similarity=-0.070 Sum_probs=22.3
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
-..|.+..+++...++|.+||+++.+
T Consensus 14 ~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 14 KSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35678899999999999999998765
No 324
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=24.91 E-value=35 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
|.-.-=++.|.++|+..-|+|+.|+.+||..
T Consensus 25 f~e~G~~~~t~~~IA~~agvsk~tlY~~F~s 55 (192)
T 2fq4_A 25 LLESGFKAVTVDKIAERAKVSKATIYKWWPN 55 (192)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHcCcccccHHHHHHHcCCCHHHHHHHCCC
Confidence 3333346789999999999999999999964
No 325
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=24.79 E-value=31 Score=25.57 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=25.6
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+|...-=.+.|.++|+..-|+|+.|+.+||..
T Consensus 26 l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 57 (191)
T 4aci_A 26 CFAEHGYEGATVRRLEEATGKSRGAIFHHFGD 57 (191)
T ss_dssp HHHHHHHHHCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHhCcccCCHHHHHHHHCCCchHHHHHCCC
Confidence 44444445689999999999999999999854
No 326
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.65 E-value=42 Score=23.75 Aligned_cols=36 Identities=6% Similarity=-0.046 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH--HhcCccchhhhhcccccccchhHHH
Q 046385 93 VEEKMAMFLFT--ISHNLRNRFIKIRFQHSGHTVHRYF 128 (218)
Q Consensus 93 veE~laifL~~--la~~~s~r~i~~~F~~S~sTVsr~f 128 (218)
..+.++--|.. ...|.+..+++...|+|.+||+++-
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34445555543 4678899999999999999999874
No 327
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=24.63 E-value=35 Score=25.41 Aligned_cols=30 Identities=10% Similarity=-0.082 Sum_probs=24.0
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 16 f~~~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 16 FTEKGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 333333578899999999999999999984
No 328
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.61 E-value=42 Score=24.57 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=23.3
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
=.+.|.+.|+..-|+|+.|+.+||..
T Consensus 24 ~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 24 YHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp TTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred ccccCHHHHHHHHCCCchhHHHHccc
Confidence 45688999999999999999999975
No 329
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=24.51 E-value=38 Score=26.74 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=21.6
Q ss_pred cCccchhhhhcccccccchhHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+.+.++|+..-|+|+.|+.+||.
T Consensus 65 ~~~t~~~IA~~aGvs~~t~Y~~F~ 88 (245)
T 3aqt_A 65 DNVGIAEITEGANIGTGTFYNYFP 88 (245)
T ss_dssp GGCCHHHHHHHTTSCGGGGGGTCS
T ss_pred ccCcHHHHHHHhCCChHHHHHHcC
Confidence 568899999999999999999874
No 330
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=24.33 E-value=19 Score=25.38 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=22.1
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+...++...|+|.+|||++.+
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35678899999999999999998764
No 331
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=24.30 E-value=45 Score=25.02 Aligned_cols=34 Identities=3% Similarity=-0.085 Sum_probs=27.0
Q ss_pred HHHHh-cCccchhhhhcccccccchhHHHHHHHHH
Q 046385 101 LFTIS-HNLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 101 L~~la-~~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
|+.|. ...++..++...++|.+|+++.+++-.++
T Consensus 30 L~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 30 VRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp HHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 34443 34788999999999999999999877665
No 332
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=24.11 E-value=31 Score=26.77 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHhcC----ccchhhhhcc-----cccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHN----LRNRFIKIRF-----QHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~----~s~r~i~~~F-----~~S~sTVsr~f~eVl~AI~ 136 (218)
+|..|. -.|..++.| .|+.+++... .+|..||..++..+.+.+-
T Consensus 157 Lt~rE~--~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~ 209 (230)
T 2oqr_A 157 LPLKEF--DLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIE 209 (230)
T ss_dssp CCHHHH--HHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHC
T ss_pred cCHHHH--HHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 555553 345566666 8999999888 8999999999988887753
No 333
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=24.10 E-value=18 Score=25.90 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 90 HLTVEEKMAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 90 ~isveE~laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
++++.+.|.-.+ .-..|.+..+++...|+|.+|||++.+
T Consensus 11 ~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 11 PIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 566677654311 346789999999999999999999876
No 334
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=24.06 E-value=39 Score=25.67 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
+|...-=.+.|.++|+..-|+|+.|+.+||..=
T Consensus 27 lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK 59 (221)
T 3c2b_A 27 LLVEGGEKALTTSGLARAANCSKESLYKWFGDR 59 (221)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHhCCcccCCHHHHHHHhCCCHHHHHHhCCCH
Confidence 333333467899999999999999999998653
No 335
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=24.05 E-value=32 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=22.6
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
-++.|.++|+..-|+|+.|+.+||..
T Consensus 30 ~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 30 YYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp TTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred cccCCHHHHHHHhCCCchhHHHHcCC
Confidence 35688999999999999999998753
No 336
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.03 E-value=31 Score=25.36 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=24.3
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
|.-.--.+.|.++|+..-|+|+.|+.+||..
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 21 IIRGGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHcCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 3333335688999999999999999998753
No 337
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=23.99 E-value=31 Score=25.92 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=22.4
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
-.+.|.++|+..-|+|+.|+.+||..
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 32 VSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cccCCHHHHHHHhCCCceeehhhcCC
Confidence 35688999999999999999998753
No 338
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=23.96 E-value=16 Score=30.12 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~ 136 (218)
|-.|+-..-+|.|++.++...++|++|||+.+.+.=+.+-
T Consensus 6 L~~F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg 45 (324)
T 1al3_A 6 LRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELG 45 (324)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 3444444444449999999999999999999887765554
No 339
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=23.85 E-value=23 Score=26.64 Aligned_cols=26 Identities=4% Similarity=-0.032 Sum_probs=23.5
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
-..|.+.++++...|+|.+|||++-+
T Consensus 78 ~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 78 MKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 56788999999999999999999876
No 340
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.76 E-value=42 Score=25.48 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=25.5
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|.-.-=.+.|.++|+..-|+|+.|+.++|.
T Consensus 19 ~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 19 AEFARHGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 34444444578999999999999999999985
No 341
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=23.71 E-value=32 Score=27.38 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=25.4
Q ss_pred HHHHHHHH--hcCccchhhhhcccccccchhHHHHH
Q 046385 97 MAMFLFTI--SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 97 laifL~~l--a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
++-.|..+ ..|.+.++++...++|.+||+++.+.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 44444433 45678899999999999999988654
No 342
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=23.66 E-value=29 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=25.0
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|...-=++.|.++|+..-|+|+.|+.+||.
T Consensus 26 lf~~~G~~~~s~~~IA~~agvsk~tlY~yF~ 56 (199)
T 3crj_A 26 ALREHGYADLTIQRIADEYGKSTAAVHYYYD 56 (199)
T ss_dssp HHHHHTTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHcCcccCCHHHHHHHhCCChhHHhhhcC
Confidence 3444444678999999999999999999874
No 343
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=23.66 E-value=44 Score=25.42 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.8
Q ss_pred cCccchhhhhcccccccchhHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
++.+.++|+..-|+|+.|+.+||..-
T Consensus 47 ~~~tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 47 RGLTFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp TTCCHHHHHHHSSSTTTCHHHHCSCH
T ss_pred hhccHHHHHHHcCCCcchHHHhCCCH
Confidence 46788999999999999999998653
No 344
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=23.42 E-value=32 Score=25.85 Aligned_cols=30 Identities=13% Similarity=-0.060 Sum_probs=24.1
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
|.-.--.+.+.+.|+..-|+|+.|+.+||.
T Consensus 27 ~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 27 VLRKGFVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHcCCccCCHHHHHHHhCCChHHHHHHCC
Confidence 333334578899999999999999999875
No 345
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=23.32 E-value=35 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.+|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 17 ~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~ 49 (197)
T 2gen_A 17 LACFSEHGVDATTIEMIRDRSGASIGSLYHHFG 49 (197)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTC
T ss_pred HHHHHHcCcccCCHHHHHHHHCCChHHHHHHCC
Confidence 344555545678999999999999999999874
No 346
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=23.18 E-value=39 Score=24.94 Aligned_cols=40 Identities=10% Similarity=-0.085 Sum_probs=28.7
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHHHHHHHHhh
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAMMKF 138 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI~~L 138 (218)
+|.-.--.+.|.++|+..-|+|+.|+.+||..=-+-+..+
T Consensus 19 l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 58 (186)
T 2jj7_A 19 KFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEV 58 (186)
T ss_dssp HHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHH
T ss_pred HHHHcCCccCCHHHHHHHhCCChhhhhhhcCCHHHHHHHH
Confidence 3333444568999999999999999999997543333333
No 347
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.14 E-value=35 Score=25.42 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.6
Q ss_pred cCccchhhhhcccccccchhHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+.|.++|+..-|+|+.|+.+||.
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (211)
T 3him_A 35 GATTTREIAASLDMSPGAVYPHYK 58 (211)
T ss_dssp TTCCHHHHHHHTTCCTTSSTTTCS
T ss_pred CcCCHHHHHHHhCCCcChhhhcCC
Confidence 568899999999999999999874
No 348
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=23.07 E-value=28 Score=25.04 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=17.7
Q ss_pred cchhhhhcccccccchhHHHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
|-+.++..|++|+.||.+.+....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 446788999999999966555443
No 349
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=23.06 E-value=35 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=24.5
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|.-.--.+.|.++|+..-|+|+.|+.+||.
T Consensus 25 lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 55 (217)
T 3nrg_A 25 EFAQNDYDSVSINRITERAGIAKGSFYQYFA 55 (217)
T ss_dssp HHHHSCGGGCCHHHHHHHHTCCTTGGGGTCS
T ss_pred HHHhcCcccCCHHHHHHHhCCcHHHHHHHcC
Confidence 3433334568899999999999999999875
No 350
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=22.91 E-value=33 Score=26.07 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.7
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
=.+.+.++|+..-|+|+.|+.+||..
T Consensus 41 ~~~~t~~~IA~~agvs~~t~Y~~F~s 66 (214)
T 2zb9_A 41 TAQLTFERVARVSGVSKTTLYKWWPS 66 (214)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 35688999999999999999999853
No 351
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=22.81 E-value=34 Score=26.00 Aligned_cols=32 Identities=9% Similarity=-0.111 Sum_probs=26.0
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|...-=++.|.++|+..-|+|+.|+.+||.
T Consensus 21 ~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 21 ETFYRKGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHhCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 34444445678999999999999999999985
No 352
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.81 E-value=58 Score=25.14 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=24.3
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++..+++|.+||++.+++..++
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4688999999999999999998877655
No 353
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=22.80 E-value=37 Score=24.90 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=17.1
Q ss_pred cchhhhhcccccccchhHHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
|-+.++..|++|+.||.+.+...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 55789999999999996655443
No 354
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=22.68 E-value=22 Score=24.71 Aligned_cols=27 Identities=0% Similarity=-0.181 Sum_probs=23.1
Q ss_pred HhcCccchhhhhcccccccchhHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
-..|.+...++...|+|.+||+++.+.
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 356788999999999999999998765
No 355
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.60 E-value=38 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=22.5
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
=.+.|.+.|+..-|+|+.|+.++|..
T Consensus 27 ~~~~ti~~IA~~agvs~~t~Y~~F~s 52 (193)
T 2dg8_A 27 IARVSHRRIAQRAGVPLGSMTYHFTG 52 (193)
T ss_dssp GGGCCHHHHHHHHTSCTHHHHHHCSS
T ss_pred hhhccHHHHHHHhCCCchhhheeCCC
Confidence 45688999999999999999998753
No 356
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=22.52 E-value=81 Score=23.62 Aligned_cols=27 Identities=4% Similarity=-0.057 Sum_probs=22.4
Q ss_pred ccchhhhhcccccccchhHHHHHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
-+...++.++++|..+|.+.+...++.
T Consensus 52 ps~~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 52 PTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp CCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 467889999999999998888876654
No 357
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=22.43 E-value=56 Score=23.69 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHh--cCccchhhhhcccccccchhHHHHHHH
Q 046385 92 TVEEKMAMFLFTIS--HNLRNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 92 sveE~laifL~~la--~~~s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
...+++.-.+.++. .+.+..+++...|.|.++.+|.|++..
T Consensus 76 ~~~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 76 HRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34556666666664 567788999999999999999998763
No 358
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=22.43 E-value=29 Score=26.53 Aligned_cols=38 Identities=21% Similarity=-0.005 Sum_probs=28.3
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH---HHHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH---EVLSAMM 136 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~---eVl~AI~ 136 (218)
+|.-.-=++.|.++|+..-|+|+.|+.+||. +++.+++
T Consensus 23 lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~a~~ 63 (210)
T 2wui_A 23 VFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMC 63 (210)
T ss_dssp HHHHSCTTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3444444678999999999999999999986 3444444
No 359
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.42 E-value=24 Score=24.97 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=18.7
Q ss_pred ccchhhhhcccccccchhHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+..+++..|++|.+||-|-+.+
T Consensus 17 vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHH
Confidence 45577999999999999776654
No 360
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=22.42 E-value=31 Score=26.16 Aligned_cols=32 Identities=25% Similarity=-0.042 Sum_probs=25.8
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 20 ~lf~~~G~~~~s~~~IA~~aGvsk~tlY~~F~ 51 (203)
T 3cdl_A 20 AEFGDRGFEITSMDRIAARAEVSKRTVYNHFP 51 (203)
T ss_dssp HHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSS
T ss_pred HHHHHcCchhcCHHHHHHHhCCCHHHHHHHCC
Confidence 34444444678999999999999999999875
No 361
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=22.37 E-value=50 Score=25.93 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHhcC----ccchhhhhcc-----cccccchhHHHHHHHHHHH
Q 046385 91 LTVEEKMAMFLFTISHN----LRNRFIKIRF-----QHSGHTVHRYFHEVLSAMM 136 (218)
Q Consensus 91 isveE~laifL~~la~~----~s~r~i~~~F-----~~S~sTVsr~f~eVl~AI~ 136 (218)
+|..|. -.|..++.| .|+..++... .+|..||..++..+.+-+-
T Consensus 154 LT~rE~--~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 154 LTPLEF--DLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp CCHHHH--HHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred cCHHHH--HHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 556663 456667777 8999999888 8999999999888877753
No 362
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=22.34 E-value=48 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=24.4
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+|.-.-=. .|.+.|+..-|+|+.|+.+||..
T Consensus 24 lf~~~G~~-~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 24 QFGEYGLH-ATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHGGG-SCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHhCcc-ccHHHHHHHhCCCHHHHHHhcCC
Confidence 33333335 89999999999999999999853
No 363
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.32 E-value=36 Score=25.27 Aligned_cols=26 Identities=12% Similarity=-0.160 Sum_probs=22.7
Q ss_pred hcCccchhhhhcccccccchhHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
=.+.+.+.|+..-|+|+.|+.+||..
T Consensus 26 ~~~~t~~~IA~~Agvs~~tly~~F~s 51 (194)
T 3dpj_A 26 FAQTSFVDISAAVGISRGNFYYHFKT 51 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cccCCHHHHHHHHCCChHHHHHHcCC
Confidence 35789999999999999999999753
No 364
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=22.21 E-value=30 Score=25.43 Aligned_cols=32 Identities=13% Similarity=-0.127 Sum_probs=24.8
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+|.-.-=.+.+.++|+..-|+|+.|+.+||..
T Consensus 20 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (195)
T 3pas_A 20 EVADHGFSATSVGKIAKAAGLSPATLYIYYED 51 (195)
T ss_dssp HHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHcChHhcCHHHHHHHhCCCchHHHHHcCC
Confidence 33333335688999999999999999998753
No 365
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=22.20 E-value=33 Score=26.12 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=22.3
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.|.++|+..-|+|+.|+.+||..
T Consensus 31 ~~~ti~~Ia~~Agvs~~t~Y~~F~s 55 (220)
T 3lsj_A 31 GSLSLREVTRAAGIVPAGFYRHFSD 55 (220)
T ss_dssp GGCCHHHHHHHHTSCGGGGTTTCSS
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCC
Confidence 4688899999999999999999864
No 366
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=22.11 E-value=23 Score=24.97 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.5
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
-..|.+...++...|+|.+||+++-+
T Consensus 19 ~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 19 KEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35678899999999999999998865
No 367
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=22.06 E-value=39 Score=25.34 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=22.2
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.|.++|+..-|+|+.|+.+||..
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred chhhHHHHHHHHCCChhHHHHhCCC
Confidence 5688999999999999999999743
No 368
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=22.06 E-value=27 Score=25.63 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=25.5
Q ss_pred hcCccchhhhhcccccccchhHHHHH---HHHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE---VLSAMM 136 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e---Vl~AI~ 136 (218)
=.+.|.+.|+..-|+|+.|+.+||.. ++.+++
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~ 66 (156)
T 3ljl_A 32 YDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALD 66 (156)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHT
T ss_pred hhhcCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 34578999999999999999999864 444444
No 369
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.02 E-value=22 Score=24.66 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=22.1
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++..-++|.+||+++.+
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35678889999999999999998865
No 370
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=21.97 E-value=30 Score=25.80 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|...--.+.|.++|+..-|+|+.|+.+||.
T Consensus 23 lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 53 (203)
T 3b81_A 23 IFIANGYENTTLAFIINKLGISKGALYHYFS 53 (203)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHcCcccCcHHHHHHHhCCCchhHHHHcC
Confidence 3433334578999999999999999999874
No 371
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=21.91 E-value=38 Score=25.16 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.0
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.+.++|+..-|+|+.|+.+||..
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred ccccHHHHHHHhCCchHHHHHHhCC
Confidence 4688999999999999999999743
No 372
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=21.85 E-value=36 Score=25.84 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=25.3
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+|...--.+.|.++|+..-|+|+.|+.+||..
T Consensus 15 lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 15 LFNEHGERTITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 44444446689999999999999999999753
No 373
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=21.82 E-value=2.5e+02 Score=21.81 Aligned_cols=84 Identities=17% Similarity=0.068 Sum_probs=52.7
Q ss_pred cHHHHHHHHHhCCcccchhccccCHHHHHHHHHHHHhcCccCCCccchHHHHHHHHHHH----HhcCccchhhhhccccc
Q 046385 45 TGSLYIQELLNGSPIFCYDLMRMDKNGFISLCQLFKEKGWLSDSKHLTVEEKMAMFLFT----ISHNLRNRFIKIRFQHS 120 (218)
Q Consensus 45 ~G~~~v~ell~~~~~~~~~~fRM~~~~F~~L~~~L~~~~~~~~T~~isveE~laifL~~----la~~~s~r~i~~~F~~S 120 (218)
.|..+++++- ..|++.+.+...=+.+++.-......+.-+.+.-.+-.||. -...-+.+++.+.++++
T Consensus 7 ~a~~~I~~~~--------~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~ 78 (207)
T 1c9b_A 7 NAFKEITTMA--------DRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRIS 78 (207)
T ss_dssp HHHHHHHHHH--------HHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSC
T ss_pred HHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence 4555555544 46778877776666555543333333334444444444544 34566778888899999
Q ss_pred ccchhHHHHHHHHHHH
Q 046385 121 GHTVHRYFHEVLSAMM 136 (218)
Q Consensus 121 ~sTVsr~f~eVl~AI~ 136 (218)
..+|.+.+..+++.+-
T Consensus 79 ~~~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 79 KKEIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 8888888887777653
No 374
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=21.81 E-value=58 Score=24.04 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=27.7
Q ss_pred HHHHHhc-Cccchhhhhcc-cccccchhHHHHHHHHH
Q 046385 100 FLFTISH-NLRNRFIKIRF-QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 100 fL~~la~-~~s~r~i~~~F-~~S~sTVsr~f~eVl~A 134 (218)
.|+.|.. +.++..++... ++|.+|+|+++++..++
T Consensus 40 IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 40 ILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp HHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 3444544 47889999999 79999999999887666
No 375
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=21.60 E-value=34 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.4
Q ss_pred cCccchhhhhcccccccchhHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+.|.+.|+..-|+|+.|+.+||.
T Consensus 36 ~~~t~~~IA~~agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 36 AQVSIREIASLAGTDPGLIRYYFG 59 (218)
T ss_dssp SCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred CcCCHHHHHHHhCCCHHHHHHHcC
Confidence 457889999999999999999984
No 376
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=21.57 E-value=39 Score=25.14 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=24.8
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
|.-.--.+.|.++|+..-|+|+.|+.+||..
T Consensus 30 f~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 30 LSSGGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHcCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 3333345788999999999999999999864
No 377
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.54 E-value=32 Score=25.24 Aligned_cols=25 Identities=16% Similarity=0.172 Sum_probs=21.7
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.+.++|+..-|+|+.|+.+||..
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred ccCCHHHHHHHhCCCcchHHHHcCC
Confidence 4578899999999999999998753
No 378
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=21.53 E-value=22 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=22.2
Q ss_pred cCccchhhhhcccccccchhHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+.|.++|+..-|+|+.|+.+||.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYP 54 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcC
Confidence 788999999999999999999875
No 379
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.52 E-value=49 Score=24.72 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=24.2
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
|.-.-=.+.|.++|+..-|+|+.|+.+||.
T Consensus 29 f~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 29 MREGDVVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp HHHHTSSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred HHHcCcccccHHHHHHHhCCChhhHhHhcC
Confidence 333334578999999999999999999985
No 380
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=21.46 E-value=51 Score=24.05 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=22.9
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+|||++-+
T Consensus 50 ~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 50 DRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 46788999999999999999999865
No 381
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=21.39 E-value=63 Score=24.89 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=24.5
Q ss_pred CccchhhhhcccccccchhHHHHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
..++..++...++|.+||++.+++..+.
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4688999999999999999998877655
No 382
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=21.36 E-value=38 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.204 Sum_probs=17.7
Q ss_pred ccchhhhhcccccccchhHHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
.+..+++..+++|..+++|.|++.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344567778888888888887776
No 383
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=21.29 E-value=20 Score=31.04 Aligned_cols=36 Identities=3% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHHHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFHEVLS 133 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~eVl~ 133 (218)
+...|+.. .+.+.++++..|++|.+||+|.+...-+
T Consensus 25 iL~~l~~~-~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 25 ILRNIYWM-QPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444443 4688899999999999999998775433
No 384
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=21.27 E-value=33 Score=28.31 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhc---CccchhhhhcccccccchhHHHHHHHHH
Q 046385 93 VEEKMAMFLFTISH---NLRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 93 veE~laifL~~la~---~~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
+-+|..--|..++. +.+..+++...+++++|++|++....+.
T Consensus 4 sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~ 48 (260)
T 3r4k_A 4 TVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA 48 (260)
T ss_dssp HHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444445555553 3577899999999999999998766554
No 385
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=21.26 E-value=32 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.7
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+|.-.-=.+.|.++|+..-|+|+.|+.+||..
T Consensus 22 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 22 IILAEGPAGVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHhcCcccCCHHHHHHHhCCcHHHHHHHhCC
Confidence 33333345688999999999999999998753
No 386
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.21 E-value=32 Score=25.24 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=18.2
Q ss_pred cchhhhhcccccccchhHHHHHHH
Q 046385 109 RNRFIKIRFQHSGHTVHRYFHEVL 132 (218)
Q Consensus 109 s~r~i~~~F~~S~sTVsr~f~eVl 132 (218)
|-+.++..|++|..||.+.+....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456788999999999976665443
No 387
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=21.20 E-value=44 Score=25.25 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=25.8
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|...-=++.|.++|+..-|+|+.|+.+||.
T Consensus 16 ~lf~~~Gy~~~s~~~IA~~AgvskgtlY~yF~ 47 (202)
T 2id6_A 16 EVFGKKGYDRATTDEIAEKAGVAKGLIFHYFK 47 (202)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHS
T ss_pred HHHHHcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 34444444678999999999999999999875
No 388
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=21.15 E-value=55 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=19.9
Q ss_pred CccchhhhhcccccccchhHHHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFHEV 131 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~eV 131 (218)
..+..+++..+++|..+.+|.|++.
T Consensus 27 ~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 27 PLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556678888888888888888876
No 389
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=21.09 E-value=20 Score=26.31 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.8
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.|.++|+..-|+|+.|+.+||..
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (170)
T 3egq_A 23 HEVSIEEIAREAKVSKSLIFYHFES 47 (170)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred ccCcHHHHHHHhCCCchhHHHHcCC
Confidence 3578899999999999999999854
No 390
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=21.05 E-value=33 Score=27.78 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=22.4
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.-.|.+.++++...|+|.+|||++.+
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 34578889999999999999999965
No 391
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=20.90 E-value=75 Score=23.25 Aligned_cols=27 Identities=11% Similarity=0.045 Sum_probs=22.6
Q ss_pred ccchhhhhcccccccchhHHHHHHHHH
Q 046385 108 LRNRFIKIRFQHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 108 ~s~r~i~~~F~~S~sTVsr~f~eVl~A 134 (218)
-+...++...++|..||.+.++.-.+.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567889999999999999988876654
No 392
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=20.86 E-value=21 Score=27.11 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred hcCccchhhhhcccccccchhHHHH
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..|.+...++...++|++|||++-+
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp -------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4577889999999999999999843
No 393
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=20.82 E-value=50 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHh-cCccchhhhhcc-cccccchhHHHHHHHHH
Q 046385 101 LFTIS-HNLRNRFIKIRF-QHSGHTVHRYFHEVLSA 134 (218)
Q Consensus 101 L~~la-~~~s~r~i~~~F-~~S~sTVsr~f~eVl~A 134 (218)
|+.|. .+.++..++... ++|.+|+++++++-.++
T Consensus 31 L~~L~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 31 IFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp HHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 34443 347889999999 59999999998876655
No 394
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=20.80 E-value=41 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=24.7
Q ss_pred cCccchhhhhcccccccchhHHHH---HHHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFH---EVLSAMM 136 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~---eVl~AI~ 136 (218)
.+.|.++|+..-|+|+.|+.+||. +++.+++
T Consensus 32 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 65 (195)
T 2iu5_A 32 HQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIF 65 (195)
T ss_dssp GGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHH
T ss_pred CeeCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 457889999999999999999985 3444444
No 395
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=20.76 E-value=33 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.1
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.|.++|+..-|+|+.|+.+||..
T Consensus 26 ~~~t~~~Ia~~agvs~~t~Y~~F~s 50 (195)
T 2dg7_A 26 DNVTVTDIAERAGLTRRSYFRYFPD 50 (195)
T ss_dssp GGCCHHHHHHHTTCCHHHHHHHCSS
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCC
Confidence 4588899999999999999999864
No 396
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=20.72 E-value=33 Score=26.23 Aligned_cols=33 Identities=18% Similarity=-0.019 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 97 MAMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 97 laifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
..+|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 21 ~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (219)
T 2w53_A 21 EACFHEHGVARTTLEMIGARAGYTRGAVYWHFK 53 (219)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCchHHhhcCC
Confidence 344544445678999999999999999999874
No 397
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.69 E-value=39 Score=25.46 Aligned_cols=32 Identities=13% Similarity=-0.017 Sum_probs=25.1
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|.-.-=.+.|.++|+..-|+|+.|+.+||.
T Consensus 22 ~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (216)
T 3f0c_A 22 KRFAHYGLCKTTMNEIASDVGMGKASLYYYFP 53 (216)
T ss_dssp HHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 34444444578999999999999999999875
No 398
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.68 E-value=32 Score=26.14 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=25.2
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 24 lf~~~G~~~~s~~~IA~~aGvsk~tlY~hF~ 54 (200)
T 2hyj_A 24 IASEEGLDGITIGRLAEELEMSKSGVHKHFG 54 (200)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHcCcccCCHHHHHHHhCCChHHHHHHcC
Confidence 3444444679999999999999999999875
No 399
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.68 E-value=45 Score=22.34 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=22.6
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+..+++...++|.+||+++.+
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45678889999999999999999876
No 400
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=20.67 E-value=56 Score=26.20 Aligned_cols=32 Identities=6% Similarity=-0.031 Sum_probs=20.7
Q ss_pred HhcCccchhhhhcccccccchhHHHHHHHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFHEVLSAM 135 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~eVl~AI 135 (218)
++...|++.++...++|++|||+.+.+.=+.+
T Consensus 17 v~~~gs~s~AA~~L~isq~avS~~i~~LE~~l 48 (303)
T 3isp_A 17 VVELGSFDAAAERLHVTPSAVSQRIKSLEQQV 48 (303)
T ss_dssp HHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 34445777777777777777777666554444
No 401
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.51 E-value=42 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=25.7
Q ss_pred HHHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 98 AMFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 98 aifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
.+|...-=++.|.++|+..-|+|+.|+.+||.
T Consensus 20 ~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 51 (209)
T 2gfn_A 20 ALIAREGISAVTTRAVAEESGWSTGVLNHYFG 51 (209)
T ss_dssp HHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTS
T ss_pred HHHHHhCcccCCHHHHHHHHCCCcchHHhcCC
Confidence 34444444678999999999999999999985
No 402
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.49 E-value=39 Score=25.67 Aligned_cols=31 Identities=16% Similarity=-0.064 Sum_probs=25.0
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+|.-.-=++.|.++|+..-|+|+.|+.+||.
T Consensus 21 lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~ 51 (203)
T 2np5_A 21 VAAESGLEGASVREVAKRAGVSIGAVQHHFS 51 (203)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHhChhhccHHHHHHHhCCCHHHHHHHcC
Confidence 3434444678999999999999999999985
No 403
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.49 E-value=34 Score=25.34 Aligned_cols=30 Identities=13% Similarity=-0.076 Sum_probs=23.8
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
|.-.--.+.|.++|+..-|+|+.|+.+||.
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHhCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 333333568899999999999999999874
No 404
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=20.42 E-value=29 Score=24.94 Aligned_cols=26 Identities=4% Similarity=-0.029 Sum_probs=22.5
Q ss_pred HhcCccchhhhhcccccccchhHHHH
Q 046385 104 ISHNLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 104 la~~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
...|.+...++...|+|.+||+++-+
T Consensus 22 ~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 22 KKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 46788999999999999999998754
No 405
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.34 E-value=45 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=21.0
Q ss_pred CccchhhhhcccccccchhHHHH
Q 046385 107 NLRNRFIKIRFQHSGHTVHRYFH 129 (218)
Q Consensus 107 ~~s~r~i~~~F~~S~sTVsr~f~ 129 (218)
+.|.++|+..-|+|+.|+.+||.
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~ 57 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFP 57 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CCCHHHHHHHhCCchHHHHHHCC
Confidence 67999999999999999999875
No 406
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=20.33 E-value=42 Score=25.04 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=25.3
Q ss_pred HHHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 99 MFLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 99 ifL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
+|...--++.|.++|+..-|+|+.|+.+||..
T Consensus 20 l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 51 (195)
T 3frq_A 20 VLKRCGPIEFTLSGVAKEVGLSRAALIQRFTN 51 (195)
T ss_dssp HHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHhhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 33333345789999999999999999999863
No 407
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.15 E-value=48 Score=25.66 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=29.0
Q ss_pred hcCccchhhhhcccccccchhHHHHH---HHHHHH-hhhhhhcC
Q 046385 105 SHNLRNRFIKIRFQHSGHTVHRYFHE---VLSAMM-KFSKEMIT 144 (218)
Q Consensus 105 a~~~s~r~i~~~F~~S~sTVsr~f~e---Vl~AI~-~L~~~~Ik 144 (218)
=.+.+.++|+..-|+|+.|+.+||.. .+.+++ ....++..
T Consensus 58 ~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~ 101 (225)
T 2id3_A 58 FDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQSLP 101 (225)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHCCC
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHhcC
Confidence 35688999999999999999999864 444444 33344443
No 408
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=20.08 E-value=37 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=21.7
Q ss_pred cCccchhhhhcccccccchhHHHHH
Q 046385 106 HNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 106 ~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
.+.+.++|+..-|+|+.|+.+||..
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCC
Confidence 4578899999999999999998753
No 409
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=20.03 E-value=33 Score=25.33 Aligned_cols=31 Identities=13% Similarity=-0.013 Sum_probs=18.9
Q ss_pred HHHHHhcCccchhhhhcccccccchhHHHHH
Q 046385 100 FLFTISHNLRNRFIKIRFQHSGHTVHRYFHE 130 (218)
Q Consensus 100 fL~~la~~~s~r~i~~~F~~S~sTVsr~f~e 130 (218)
|.-.-=.+.|.++|+..-|+|+.|+.+||..
T Consensus 25 f~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 55 (199)
T 3on2_A 25 LEKDGVDGLSLRQLAREAGVSHAAPSKHFRD 55 (199)
T ss_dssp HHHHCGGGCCHHHHHHHTC-----CCCSSSS
T ss_pred HHhcChhhhhHHHHHHHhCCChHHHHHHhCC
Confidence 3333344578999999999999999988753
Done!