Query 046386
Match_columns 609
No_of_seqs 179 out of 562
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 2.7E-17 9.3E-22 175.5 23.5 405 37-593 25-439 (451)
2 3o7q_A L-fucose-proton symport 99.7 3.9E-16 1.3E-20 166.1 24.8 357 56-544 43-409 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.4 6.2E-11 2.1E-15 128.4 28.5 416 61-593 36-477 (491)
4 2gfp_A EMRD, multidrug resista 99.3 8.8E-13 3E-17 137.8 6.8 331 55-544 16-354 (375)
5 2cfq_A Lactose permease; trans 99.2 3.4E-11 1.2E-15 128.9 9.3 179 381-587 213-399 (417)
6 2xut_A Proton/peptide symporte 99.0 1.2E-08 4.1E-13 111.4 19.6 123 61-188 35-169 (524)
7 4gc0_A D-xylose-proton symport 99.0 2.2E-08 7.6E-13 108.0 19.5 121 62-182 35-177 (491)
8 4aps_A DI-OR tripeptide H+ sym 98.5 8.9E-07 3E-11 95.5 14.8 174 389-588 14-197 (491)
9 1pw4_A Glycerol-3-phosphate tr 98.4 6.4E-07 2.2E-11 94.9 11.4 175 386-587 26-206 (451)
10 2xut_A Proton/peptide symporte 98.2 2.8E-06 9.5E-11 92.6 8.6 172 388-585 12-196 (524)
11 3o7q_A L-fucose-proton symport 98.1 1.1E-05 3.7E-10 85.2 12.2 125 411-540 49-177 (438)
12 2gfp_A EMRD, multidrug resista 98.0 5.9E-06 2E-10 85.7 7.1 146 411-582 23-169 (375)
13 2cfq_A Lactose permease; trans 96.3 0.0013 4.6E-08 69.6 2.4 150 384-541 3-163 (417)
14 4gc0_A D-xylose-proton symport 96.2 0.024 8.4E-07 60.4 12.0 115 427-543 56-189 (491)
15 2knc_B Integrin beta-3; transm 20.7 1.7E+02 0.0058 23.5 5.5 38 567-604 12-53 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.77 E-value=2.7e-17 Score=175.52 Aligned_cols=405 Identities=13% Similarity=0.001 Sum_probs=248.6
Q ss_pred chHHHHHHHHHHHHhcC-CccccccccHHHHHHhCCChhhhhHHHHhhhcccch-hhhhhhhhhhhhHHHHHHHHHHHHH
Q 046386 37 RKWMILVATIWIQAFTG-TNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLF-GWLSGLALMYFPLWVVLFMAAFMGF 114 (609)
Q Consensus 37 ~Rw~~lvas~~v~l~~G-t~Y~fs~YS~~lk~~L~~sq~qln~I~~a~~lG~~~-G~~sGll~~~~P~~~vllig~~~~~ 114 (609)
.||..+.+........+ ..+.++.+-|.+.+++ +|..|...+..+..+|..+ ..+.|.+.|..++..+++++.++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 35666655555554444 4577888889999999 9999999999999998844 6777999999988888888877777
Q ss_pred HHHHHHHHHHhhcCcchhHHHHHHHHHhhcchhhhhhHHHHHHHHhcC-CCCcchhhhhhhhhhhhHHHHHHHHhhhCCC
Q 046386 115 FGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFP-ANRALALSLTVSFNGVSAAIYALAGNAINPS 193 (609)
Q Consensus 115 ~GY~~~~l~~~~~~~~~~~~l~~~~~l~G~g~~~~~taalvT~~kNFP-~~RG~avgl~k~~~GLSaaI~s~i~~~~f~~ 193 (609)
++..+....... ...+|.+.+..++.|.+.+..+.+......+.|| ++||.+.|+.-...+++..+...+...+.
T Consensus 104 ~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-- 179 (451)
T 1pw4_A 104 AVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-- 179 (451)
T ss_dssp HHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--
T ss_pred HHHHHHHhhhhc--cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 777665432111 1124566666778888888888888888999999 77999999998888888777665543211
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHH
Q 046386 194 SHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGAL 273 (609)
Q Consensus 194 d~~~fLllla~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~i~v~l~~yl~v~~~~~~~~~~~~~~~~g~~ 273 (609)
. ... +....|.....+.++.++ +
T Consensus 180 -------------------~-----~~g-----------~w~~~f~~~~~~~~~~~~----------------------~ 202 (451)
T 1pw4_A 180 -------------------A-----WFN-----------DWHAALYMPAFCAILVAL----------------------F 202 (451)
T ss_dssp -------------------H-----HTC-----------CSTTCTHHHHHHHHHHHH----------------------H
T ss_pred -------------------H-----Hhc-----------cHHHHHHHHHHHHHHHHH----------------------H
Confidence 0 000 011122211111111100 0
Q ss_pred HHHHhhcccccccccccccccccccccccCCCCccccCCCchhHHHHHhhHhhhhccCCCCCCCCCcccccccccccccc
Q 046386 274 FLLMFPLCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTR 353 (609)
Q Consensus 274 ~ll~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (609)
..+.. |- .+.. .+.. ++++++.+. + ++. .
T Consensus 203 ~~~~~----~~------------~~~~-~~~~------~~~~~~~~~----~--------~~~---------------~- 231 (451)
T 1pw4_A 203 AFAMM----RD------------TPQS-CGLP------PIEEYKNDY----P--------DDY---------------N- 231 (451)
T ss_dssp HHHHC----CC------------SSTT-TCCC------SCTTTCCC----------------------------------
T ss_pred HHhhc----cC------------CHhh-cCCC------Chhhhcccc----c--------ccc---------------h-
Confidence 11111 10 0000 0000 000000000 0 000 0
Q ss_pred cccccCCCcccccccccchhhcccCchHHHHhhhHHHHHHHHHHHhhccccceeecchhHHHHH-hcCCc-ccchhhHHH
Q 046386 354 TKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQS-LGESS-RTTTLLTLY 431 (609)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Fwll~~~~~~g~g~Glm~I~n~g~I~~a-l~~~~-~~~~~VSl~ 431 (609)
++ .+ ++ ....+...++.++++.+|.+.+..++......++........++ ++.+. ......++.
T Consensus 232 ~~-~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 232 EK-AE---------QE----LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred hh-hh---------cc----cccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 00 00 00011124678899999998887766443222333444444444 34432 245677888
Q ss_pred HHhhhhhhhhcc-chhhhhhhcccchhHHHHHHHHHHH-HHHHHHHhcC--CcchhHHHHHHHHhhhcchhhhHHHHHHH
Q 046386 432 SSFSFFGRLLSA-APDYMRAKVYFARTGWLTIALLPTP-VAFCLLATSG--NAVALQAGTSLIGLSSGFIFAAAVSITSE 507 (609)
Q Consensus 432 Si~n~~GRl~~g-~SD~l~~~~~~~R~~~l~~~~~~~~-~~~ll~~~~~--~~~~l~~~s~liG~~yG~~f~~~P~i~se 507 (609)
.+.+.+|+++.| ++|++.+ + +|. .+.+...+.. ++.+++...+ +...+.+...+.|++++..+....+++.|
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFR--G-NRG-ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTST--T-CHH-HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--C-Cch-hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 888999999988 4554310 2 222 2333222333 4444433222 33456677888999999999999999999
Q ss_pred hhCCCCchhhhhHHHhhhhh-HHHHHHHHHHHHhhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 046386 508 LFGPNSVGVNHNILITNIPI-GSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVL 586 (609)
Q Consensus 508 ~FG~k~fg~nyg~~~~a~~~-gs~~~~~i~g~iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~ 586 (609)
.+..++.|+.+|+..+...+ |..+++.+.|.++|..+ |+.+|.+.+++++++.++.++
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g---------------------~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG---------------------WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888 99999999999999753 899999999988888887776
Q ss_pred HHHHHhh
Q 046386 587 LFLRTRH 593 (609)
Q Consensus 587 l~~r~r~ 593 (609)
+..+.++
T Consensus 433 ~~~~~~~ 439 (451)
T 1pw4_A 433 VMIGEKR 439 (451)
T ss_dssp HHHHHHH
T ss_pred HHhhhhh
Confidence 6544433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.73 E-value=3.9e-16 Score=166.13 Aligned_cols=357 Identities=13% Similarity=0.107 Sum_probs=222.1
Q ss_pred cccccccHHHHHHhCCChhhhhHHHHhhhccc-chhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH
Q 046386 56 FDFSAYSSDLKSVLGVSQVQLNYLATASDLGK-LFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYIL 134 (609)
Q Consensus 56 Y~fs~YS~~lk~~L~~sq~qln~I~~a~~lG~-~~G~~sGll~~~~P~~~vllig~~~~~~GY~~~~l~~~~~~~~~~~~ 134 (609)
+.++.+-|.+++++|+|..|...+..+..+|. ...++.|.+.|...+..++.++.+...++..+.+.... ...+|.
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~~ 119 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHH
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---cccHHH
Confidence 57888899999999999999999999999987 55677799999998888888888877777776644321 123677
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHhcC-CCCcchhhhhhhhhhhhHHHHHHHHhhhC-CCCh---hHHHHHHHHHHHHH
Q 046386 135 VFFLCLLSGLSITWFNTVCFVLCIQNFP-ANRALALSLTVSFNGVSAAIYALAGNAIN-PSSH---ALYLLLNALIPLIT 209 (609)
Q Consensus 135 l~~~~~l~G~g~~~~~taalvT~~kNFP-~~RG~avgl~k~~~GLSaaI~s~i~~~~f-~~d~---~~fLllla~~p~~v 209 (609)
+++..++.|.|.+..+.++.....+.+| ++||.+.|+.-...+++..+...+...+. .... ..-.. ..-+...
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 197 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD--KMSPEQL 197 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH--HSCHHHH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc--cCCcchh
Confidence 7777788899888888888899999999 77899999999999999988887765443 1100 00000 0000000
Q ss_pred HHhhhhccccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHHHHHHhhcccccccccc
Q 046386 210 SLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYAR 289 (609)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~i~v~l~~yl~v~~~~~~~~~~~~~~~~g~~~ll~~p~~~p~~~~~~ 289 (609)
... .......++..+.+...+.. + .. +..... .
T Consensus 198 ----------------~~~--~~~~~~~w~~~~~~~~~~~~---~---------------~~-~~~~~~----~------ 230 (438)
T 3o7q_A 198 ----------------SAY--KHSLVLSVQTPYMIIVAIVL---L---------------VA-LLIMLT----K------ 230 (438)
T ss_dssp ----------------HHH--HHHHHHHHHHHHHHHHHHHH---H---------------HH-HHHHHC----C------
T ss_pred ----------------hhh--hhhhhhhHHHHHHHHHHHHH---H---------------HH-HHHHHH----c------
Confidence 000 00000111111110000000 0 00 000000 0
Q ss_pred cccccccccccccCCCCccccCCCchhHHHHHhhHhhhhccCCCCCCCCCcccccccccccccccccccCCCcccccccc
Q 046386 290 DWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETIIGK 369 (609)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (609)
.+ ++++ + .+++ + + +
T Consensus 231 -------~p--------------~~~~--------~-------~~~~-----------------~---~---------~- 244 (438)
T 3o7q_A 231 -------FP--------------ALQS--------D-------NHSD-----------------A---K---------Q- 244 (438)
T ss_dssp -------CC--------------CCTT--------T-------CCCC-----------------S---S---------T-
T ss_pred -------CC--------------cccc--------c-------cccc-----------------c---c---------c-
Confidence 00 0000 0 0000 0 0 0
Q ss_pred cchhhcccCchHHHHhhhHHHHHHHHHHHhhccccceeecchhHH-HHHh-cCCc-ccchhhHHHHHhhhhhhhhcc-ch
Q 046386 370 DQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQI-AQSL-GESS-RTTTLLTLYSSFSFFGRLLSA-AP 445 (609)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~Fwll~~~~~~g~g~Glm~I~n~g~I-~~al-~~~~-~~~~~VSl~Si~n~~GRl~~g-~S 445 (609)
.....+.++.++++.+|...+..++..+....+.+..... .+.. +.+. ......++..+.+.+||++.| ++
T Consensus 245 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 319 (438)
T 3o7q_A 245 -----GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI 319 (438)
T ss_dssp -----TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011245778999999998888877655444555666666 6654 5533 345677888888999999988 55
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHhhhcchhhhHHHHHHHhhCCCCchhhhhHHHhhh
Q 046386 446 DYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNI 525 (609)
Q Consensus 446 D~l~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~~~a~ 525 (609)
|++ + |...+.+..++..++.+++...+ .....+...++|+++|..+++..+++.|.++.+ -++.-++... .
T Consensus 320 ~r~----~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 390 (438)
T 3o7q_A 320 SRF----A--PHKVLAAYALIAMALCLISAFAG-GHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-T 390 (438)
T ss_dssp HHS----C--HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHH-T
T ss_pred HHh----c--chHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHH-H
Confidence 554 2 22234444444455544444233 333455568899999999999999999999944 6666666653 4
Q ss_pred hhHHHHHHHHHHHHhhccC
Q 046386 526 PIGSLVYGFLAAIVYDSNV 544 (609)
Q Consensus 526 ~~gs~~~~~i~g~iyD~~~ 544 (609)
.+|+.+++.+.|.++|..+
T Consensus 391 ~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4888889999999999865
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=6.2e-11 Score=128.36 Aligned_cols=416 Identities=13% Similarity=0.027 Sum_probs=214.3
Q ss_pred ccHHHHHH-----hCCChhhhhHHHHhhhcccc-hhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Q 046386 61 YSSDLKSV-----LGVSQVQLNYLATASDLGKL-FGWLSGLALMY-FPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYI 133 (609)
Q Consensus 61 YS~~lk~~-----L~~sq~qln~I~~a~~lG~~-~G~~sGll~~~-~P~~~vllig~~~~~~GY~~~~l~~~~~~~~~~~ 133 (609)
..+-+++. +|+|..|...+..+..+|.. ..++.|.+.|. ..+..++.++.++..++..+... . ..++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--~----~~~~ 109 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--P----FGAS 109 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS--C----CSTT
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH--h----hhHH
Confidence 34445555 99999999999999998874 45677999999 77777777877776666655421 1 2245
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHhcC-CC--CcchhhhhhhhhhhhHHHHHHHHhhhCCCChhHHHHHHHHHHHHHH
Q 046386 134 LVFFLCLLSGLSITWFNTVCFVLCIQNFP-AN--RALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITS 210 (609)
Q Consensus 134 ~l~~~~~l~G~g~~~~~taalvT~~kNFP-~~--RG~avgl~k~~~GLSaaI~s~i~~~~f~~d~~~fLllla~~p~~v~ 210 (609)
.++...++.|.|.+....++.....+.|| ++ ||.+.++.-....+++.+...+...+.+...-...+.+.....+++
T Consensus 110 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~ 189 (491)
T 4aps_A 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIG 189 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 66667778888888888888888899998 55 6777877777777777776666655433111112222222222333
Q ss_pred HhhhhccccC-CCCCCCCCCCCCCcc---hhhHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHHHHHHhhccccccc
Q 046386 211 LAALIPILRQ-PSLDPLPPEGVKRDS---FIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIV 286 (609)
Q Consensus 211 ~~~~~~~~~~-~~~~~~~~~~~~~~~---~~F~~~~~i~v~l~~yl~v~~~~~~~~~~~~~~~~g~~~ll~~p~~~p~~~ 286 (609)
++......+. .+.+..++++..+.+ +.+.....+ ....++. ++... ..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------------------l~~~~~~-~~~~~----~~- 241 (491)
T 4aps_A 190 LLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA----------------------VAGFIAI-IVVMN----LV- 241 (491)
T ss_dssp HHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC----------------------CHHHHHH-HHHHH----HH-
T ss_pred HHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH----------------------HHHHHHH-HHHHH----hc-
Confidence 3322222221 111111111111111 111100000 0000100 01000 00
Q ss_pred ccccccccccccccccCCCCccccCCCchhHHHHHhhHhhhhccCCCCCCCCCcccccccccccccccccccCCCccccc
Q 046386 287 YARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETI 366 (609)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (609)
... +.++.............. .... .. .+ +.
T Consensus 242 ---------~~~------------~~~~~~~~~~~~~~~~~~----~~~~--------------~~-~~--~~------- 272 (491)
T 4aps_A 242 ---------GWN------------SLPAYINLLTIVAIAIPV----FYFA--------------WM-IS--SV------- 272 (491)
T ss_dssp ---------SSC------------CTTHHHHHHHHHHHHHHH----HHHH--------------HH-C------------
T ss_pred ---------cCc------------ccccchhhhhHHHHHHHH----HHHH--------------HH-hh--cc-------
Confidence 000 000000000000000000 0000 00 00 00
Q ss_pred ccccchhhcccCchHHHHhhhHHHHHHHHHHHhhccccceeecchhHHHHHh-cCC-cccchhhHHHHHhhhhhhhhcc-
Q 046386 367 IGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSL-GES-SRTTTLLTLYSSFSFFGRLLSA- 443 (609)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~Fwll~~~~~~g~g~Glm~I~n~g~I~~al-~~~-~~~~~~VSl~Si~n~~GRl~~g- 443 (609)
. . .....+ +...++.+++..++....-....+......+.. +.+ .......++..+...++..+.|
T Consensus 273 -~------~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (491)
T 4aps_A 273 -K------V-TSTEHL---RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAW 341 (491)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHH
T ss_pred -c------c-cHHHHH---HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHH
Confidence 0 0 000001 111233333222221111112223333344432 322 2345567777777888887776
Q ss_pred chhhhhhhcccchhHHHHHHHHHHHHHHHHHHhc---------CCcchhHHHHHHHHhhhcchhhhHHHHHHHhhCCCCc
Q 046386 444 APDYMRAKVYFARTGWLTIALLPTPVAFCLLATS---------GNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSV 514 (609)
Q Consensus 444 ~SD~l~~~~~~~R~~~l~~~~~~~~~~~ll~~~~---------~~~~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~f 514 (609)
++|++.+|.. .+.+.+.+..++++++++++... .+...+.+...+.|++.|..+....+++.|.+..++-
T Consensus 342 l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 342 LWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp HHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred HHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 5676654421 22223333333444444333211 1344566778899999999999999999999999999
Q ss_pred hhhhhHHHhhhhhHHHHHHHHHHHHhhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046386 515 GVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRH 593 (609)
Q Consensus 515 g~nyg~~~~a~~~gs~~~~~i~g~iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~l~~r~r~ 593 (609)
|+..|+..+...+|+.+++.+.|.+.|.. |...|.+.+++++++.++.+++..+.|+
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNAKS----------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGGSS----------------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888776532 5677888888887777776666554444
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.33 E-value=8.8e-13 Score=137.81 Aligned_cols=331 Identities=15% Similarity=0.073 Sum_probs=197.2
Q ss_pred ccccccccHHHHHHhCCChhhhhHHHHhhhccc-chhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Q 046386 55 NFDFSAYSSDLKSVLGVSQVQLNYLATASDLGK-LFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYI 133 (609)
Q Consensus 55 ~Y~fs~YS~~lk~~L~~sq~qln~I~~a~~lG~-~~G~~sGll~~~~P~~~vllig~~~~~~GY~~~~l~~~~~~~~~~~ 133 (609)
.+.++.+-|.+++++|+|.+|...+..+..++. ....+.|.+.|+..+..++.++.+...++..+.... ..+|
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~ 89 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------SSLT 89 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------HHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccHH
Confidence 344556667889999999999999999988888 445667999999866655566666655665544332 1356
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHhcC-CCCcchhhhhhhhhhhhHHHHHHHHhhhCCCChhHHHHHHHHHHHHHHHh
Q 046386 134 LVFFLCLLSGLSITWFNTVCFVLCIQNFP-ANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLA 212 (609)
Q Consensus 134 ~l~~~~~l~G~g~~~~~taalvT~~kNFP-~~RG~avgl~k~~~GLSaaI~s~i~~~~f~~d~~~fLllla~~p~~v~~~ 212 (609)
.+....++.|.+.+..+.+......+.+| ++|+.+.|+.-...+++..+...+...+.+.
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------------- 150 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM------------------- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-------------------
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------------------
Confidence 66667788888888888888888899997 7899999999888888887766664433110
Q ss_pred hhhccccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHHHHHHhhccccccccccccc
Q 046386 213 ALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWF 292 (609)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~i~v~l~~yl~v~~~~~~~~~~~~~~~~g~~~ll~~p~~~p~~~~~~~~~ 292 (609)
..++..+.+..+ +.++........
T Consensus 151 -----------------------~~~~~~~~~~~~-------------------------~~~~~~~~~~~~-------- 174 (375)
T 2gfp_A 151 -----------------------WNWRACYLFLLV-------------------------LCAGVTFSMARW-------- 174 (375)
T ss_dssp -----------------------HHHHHHHHHHHH-------------------------HHHHHHCCCCCS--------
T ss_pred -----------------------ccHHHHHHHHHH-------------------------HHHHHHHHHHHH--------
Confidence 001111110000 000000000000
Q ss_pred ccccccccccCCCCccccCCCchhHHHHHhhHhhhhccCCCCCCCCCcccccccccccccccccccCCCcccccccccch
Q 046386 293 KRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETIIGKDQL 372 (609)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (609)
.+ ++ ++ + + +++ . +
T Consensus 175 ----~~-----~~-------~~--~-------~--------~~~---------------~-~------------------ 187 (375)
T 2gfp_A 175 ----MP-----ET-------RP--V-------D--------APR---------------T-R------------------ 187 (375)
T ss_dssp ----SC-----CC-------ST--T-------T--------CCC---------------C-C------------------
T ss_pred ----Cc-----cc-------CC--C-------C--------ccc---------------c-c------------------
Confidence 00 00 00 0 0 000 0 0
Q ss_pred hhcccCchHHHHhhhHHHHHHHHHHHhhccccceeecchhHHHHH-hcCCc-ccchhhHHHHHhhhhhhhhccchhhhhh
Q 046386 373 AMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQS-LGESS-RTTTLLTLYSSFSFFGRLLSAAPDYMRA 450 (609)
Q Consensus 373 ~~~~~~~~~~~~l~~~~Fwll~~~~~~g~g~Glm~I~n~g~I~~a-l~~~~-~~~~~VSl~Si~n~~GRl~~g~SD~l~~ 450 (609)
...+.++.++++++|.+.+..++.......+........++ .+.+. ......++..+...+|++..+ ++.|
T Consensus 188 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~---~l~~ 260 (375)
T 2gfp_A 188 ----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG---RPNK 260 (375)
T ss_dssp ----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH---TTTT
T ss_pred ----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 00022567889999998777766432222233333333333 33321 233445555555666666555 4545
Q ss_pred hcccchhHHHHHHHHHHHHHHH--HHHh--cCCcchhHHHHHHHHhhhcchhhhHHHHHHHhhCCCCchhhhhHHHhhhh
Q 046386 451 KVYFARTGWLTIALLPTPVAFC--LLAT--SGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIP 526 (609)
Q Consensus 451 ~~~~~R~~~l~~~~~~~~~~~l--l~~~--~~~~~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~~~a~~ 526 (609)
|.+. |. .+.... ....+.. .... .++...+.+...+.|+++|..+....+.+.|.+. ++.|+..|+......
T Consensus 261 r~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 261 RFST-LM-WQSVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp HHHH-HH-HHHHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH-HH-HHHHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 4432 22 111111 0111111 1111 1123445677889999999999999999999998 899999999998888
Q ss_pred hHHHHHHHHHHHHhhccC
Q 046386 527 IGSLVYGFLAAIVYDSNV 544 (609)
Q Consensus 527 ~gs~~~~~i~g~iyD~~~ 544 (609)
+|+.+++.+.|.++|...
T Consensus 337 ~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 337 IGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 999988888999988653
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.18 E-value=3.4e-11 Score=128.88 Aligned_cols=179 Identities=11% Similarity=0.020 Sum_probs=113.4
Q ss_pred HHHHhhhHHHHHHHHHHHhhccccceee-cchhHHHHHhcCCc-----ccchhhHHHHHhhhhhhhhcc-chhhhhhhcc
Q 046386 381 ARLLVLRLDFWLYYIAYFCGGAIGLVYS-NNLGQIAQSLGESS-----RTTTLLTLYSSFSFFGRLLSA-APDYMRAKVY 453 (609)
Q Consensus 381 ~~~~l~~~~Fwll~~~~~~g~g~Glm~I-~n~g~I~~al~~~~-----~~~~~VSl~Si~n~~GRl~~g-~SD~l~~~~~ 453 (609)
.++.++++++|.+++..++.. .+.... .......+...... ......++..+.+.+|++..| ++|++ +
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----g 287 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI----G 287 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----c
Confidence 456789999998766543321 122111 12222222221101 112344555567778888877 45554 3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHhhhcchhhhHHHHHHHhhCCCCchhhhhHH-HhhhhhHHHHH
Q 046386 454 FARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNIL-ITNIPIGSLVY 532 (609)
Q Consensus 454 ~~R~~~l~~~~~~~~~~~ll~~~~~~~~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~-~~a~~~gs~~~ 532 (609)
|...+....+.+++..+++...++...+.+...+.+++++........+++|.+..+.-|+.+|+. ..+..+|+.++
T Consensus 288 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 288 --GKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 222333334444454444432333444555566678888888888889999999999999999995 67777999999
Q ss_pred HHHHHHHhhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 046386 533 GFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLL 587 (609)
Q Consensus 533 ~~i~g~iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~l 587 (609)
+.+.|.++|..+ |+..|.+.+++++++.++.+.+
T Consensus 366 p~l~G~l~~~~g---------------------~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 366 SVLAGNMYESIG---------------------FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp THHHHTHHHHSH---------------------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHhcC---------------------cHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998542 8889999888888877765543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.99 E-value=1.2e-08 Score=111.36 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=87.7
Q ss_pred ccHHHHHHhC------CChhhhhHHHHhhhcccc-hhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 046386 61 YSSDLKSVLG------VSQVQLNYLATASDLGKL-FGWLSGLALMYF-PLWVVLFMAAFMGFFGYGLQWLVISHVISLPY 132 (609)
Q Consensus 61 YS~~lk~~L~------~sq~qln~I~~a~~lG~~-~G~~sGll~~~~-P~~~vllig~~~~~~GY~~~~l~~~~~~~~~~ 132 (609)
..+-+++.+| +|..|...+..+..++.. ..++.|.+.|.. .+..++.++.+...+++.+.... . ..+
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~---~~~ 109 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--E---HSV 109 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--S---SCH
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--c---ccH
Confidence 3445788899 999999988888888874 456679999998 77777777777666666554322 1 124
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHhcC-CCCcchhhh---hhhhhhhhHHHHHHHHh
Q 046386 133 ILVFFLCLLSGLSITWFNTVCFVLCIQNFP-ANRALALSL---TVSFNGVSAAIYALAGN 188 (609)
Q Consensus 133 ~~l~~~~~l~G~g~~~~~taalvT~~kNFP-~~RG~avgl---~k~~~GLSaaI~s~i~~ 188 (609)
|.++...++.|.+.+....+......+.|| ++||.+.++ .-....+++++...+..
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677888878777777788889998 567877666 66666666666555443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.95 E-value=2.2e-08 Score=108.00 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=77.3
Q ss_pred cHHHHHHhCCC--------hhhhhHHHHhhhcccch-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 046386 62 SSDLKSVLGVS--------QVQLNYLATASDLGKLF-GWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHV----- 127 (609)
Q Consensus 62 S~~lk~~L~~s--------q~qln~I~~a~~lG~~~-G~~sGll~~~~P~~~vllig~~~~~~GY~~~~l~~~~~----- 127 (609)
-|.+++.++.+ +++...+..+..+|..+ +++.|.+.|.+.+..+++++.++..++-.+.-....+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~ 114 (491)
T 4gc0_A 35 VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINP 114 (491)
T ss_dssp HHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS
T ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 35667766432 33444566666777755 46679999999888877777666555543321111000
Q ss_pred -------CcchhHHHHHHHHHhhcchhhhhhHHHHHHHHhcC-CCCcchhhhhhhhhhhhHHH
Q 046386 128 -------ISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFP-ANRALALSLTVSFNGVSAAI 182 (609)
Q Consensus 128 -------~~~~~~~l~~~~~l~G~g~~~~~taalvT~~kNFP-~~RG~avgl~k~~~GLSaaI 182 (609)
.+..++.+.+.=++.|.|.+.....+..-..+..| ++||...++.-.+..++..+
T Consensus 115 ~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 115 DNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp SSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence 11235666666688898888888888888899998 66888887765555444433
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.51 E-value=8.9e-07 Score=95.53 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhhccccceeecchhHHHHH------hcCCc-ccchhhHHHHHhhhhhhhhcc-chhhhhhhcccchhHHH
Q 046386 389 DFWLYYIAYFCGGAIGLVYSNNLGQIAQS------LGESS-RTTTLLTLYSSFSFFGRLLSA-APDYMRAKVYFARTGWL 460 (609)
Q Consensus 389 ~Fwll~~~~~~g~g~Glm~I~n~g~I~~a------l~~~~-~~~~~VSl~Si~n~~GRl~~g-~SD~l~~~~~~~R~~~l 460 (609)
.+|.+++..++....-..+...+....+. ++.+. ......++..+...++.+.+| ++|.. ++ |.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---~g--~r~~~ 88 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI---IG--ARPAV 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SC--HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc--chHHH
Confidence 56666655544321111222333333333 45433 355678888889999999998 56651 33 33344
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHhhhcchhhhHHHHHHHhhCCCC--chhhhhHHHhhhhhHHHHHHHHHHH
Q 046386 461 TIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNS--VGVNHNILITNIPIGSLVYGFLAAI 538 (609)
Q Consensus 461 ~~~~~~~~~~~ll~~~~~~~~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~--fg~nyg~~~~a~~~gs~~~~~i~g~ 538 (609)
.+..++..++.++.+..++...+++.-.+.|++.|..++..+++++|+|..++ -++.+++...+..+|..+++.+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666545566778889999999999999999999999999888 7788888888889999999999999
Q ss_pred HhhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 046386 539 VYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLF 588 (609)
Q Consensus 539 iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~l~ 588 (609)
+.|..+ +|..|.+.+..+++++++.++..
T Consensus 169 l~~~~g---------------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 169 AQEAAG---------------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHSC---------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhh---------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 988653 89999998777777766655443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.45 E-value=6.4e-07 Score=94.94 Aligned_cols=175 Identities=9% Similarity=0.009 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHhhccccceeecchhHHHHHhcCC-cccchhhHHHHHhhhhhhhhcc-chhhhhhhcccchhHHHHHH
Q 046386 386 LRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSLGES-SRTTTLLTLYSSFSFFGRLLSA-APDYMRAKVYFARTGWLTIA 463 (609)
Q Consensus 386 ~~~~Fwll~~~~~~g~g~Glm~I~n~g~I~~al~~~-~~~~~~VSl~Si~n~~GRl~~g-~SD~l~~~~~~~R~~~l~~~ 463 (609)
+...++.+++..++....-.++..-+..+.+++ .+ .......++..+...++.+..| ++|.+ + |...+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----g--~r~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS----N--PRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS----C--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc----C--chHHHHHH
Confidence 344555555555442211111222234444445 42 2345677777888888888888 45554 3 33355555
Q ss_pred HHHHHHHHHHHHh----cCCcchhHHHHHHHHhhhcchhhhHHHHHHHhhCCCCchhhhhHHHhhhhhHHHHHHHHHHHH
Q 046386 464 LLPTPVAFCLLAT----SGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIV 539 (609)
Q Consensus 464 ~~~~~~~~ll~~~----~~~~~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~~~a~~~gs~~~~~i~g~i 539 (609)
.++.+++.++.+. .++...+++.-++.|++.|..+....++++|++..|+-+...|+...+..+|..+++.+.|.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666654 566778889999999999999999999999999999999999999999999999999999988
Q ss_pred hhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q 046386 540 YDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLL 587 (609)
Q Consensus 540 yD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~l 587 (609)
.+..+ .+|.+|.+.+.++++..++.++.
T Consensus 179 ~~~~g--------------------~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 179 MAWFN--------------------DWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHTC--------------------CSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--------------------cHHHHHHHHHHHHHHHHHHHHhh
Confidence 86543 27778888887777666555444
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.17 E-value=2.8e-06 Score=92.55 Aligned_cols=172 Identities=15% Similarity=0.096 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhhccccceeecchhH-HHHHhc------CCc-ccchhhHHHHHhhhhhhhhccchhhhhhhc-ccchhH
Q 046386 388 LDFWLYYIAYFCGGAIGLVYSNNLGQ-IAQSLG------ESS-RTTTLLTLYSSFSFFGRLLSAAPDYMRAKV-YFARTG 458 (609)
Q Consensus 388 ~~Fwll~~~~~~g~g~Glm~I~n~g~-I~~al~------~~~-~~~~~VSl~Si~n~~GRl~~g~SD~l~~~~-~~~R~~ 458 (609)
+.+|.+++..++....-.++...+.. +.+.++ .+. ......++..+...++.+..| ++.||+ +.+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G---~l~dr~~g~r~-- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG---WIADRFFGKYN-- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHH---HHHTTSSCSHH--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcchH--
Confidence 35566555554432211122233333 334455 432 345678888888888888888 334444 4333
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CcchhHHHHHHHHhhhcchhhhHHHHHHHhhCCCCchh---hhhHHHhhhhhHHHHHHH
Q 046386 459 WLTIALLPTPVAFCLLATSG-NAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGV---NHNILITNIPIGSLVYGF 534 (609)
Q Consensus 459 ~l~~~~~~~~~~~ll~~~~~-~~~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~fg~---nyg~~~~a~~~gs~~~~~ 534 (609)
.+.+..++..++.++....+ +...+++.-.+.|++.|..+...+++++|.|..++-++ .+|+...+..+|..+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~ 166 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL 166 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444 56778888999999999999999999999999888753 456688888899999998
Q ss_pred HHHHHhhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHH
Q 046386 535 LAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASV 585 (609)
Q Consensus 535 i~g~iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl 585 (609)
+.|.+.|.. .++..|.+.+.+++++.++.+
T Consensus 167 ~~~~l~~~~---------------------g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 167 SMPLLLKNF---------------------GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TSTHHHHTS---------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc---------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 888888754 389999988877666555443
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.14 E-value=1.1e-05 Score=85.19 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=93.7
Q ss_pred hhHHHHHhcCCc-ccchhhHHHHHhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHHHHHHH---HhcCCcchhHHH
Q 046386 411 LGQIAQSLGESS-RTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLL---ATSGNAVALQAG 486 (609)
Q Consensus 411 ~g~I~~al~~~~-~~~~~VSl~Si~n~~GRl~~g~SD~l~~~~~~~R~~~l~~~~~~~~~~~ll~---~~~~~~~~l~~~ 486 (609)
+..+.++++.+. ......++..+...++.+..| ++.||++ |++.+.+..++.+++.++. ...++...+++.
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G---~l~dr~g--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAG---ILMKKLS--YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHH---HHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHH---HHHHHhc--chHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 334556666533 245566777777777777777 3444443 3334555555566665555 445566778888
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhCCCCchhhhhHHHhhhhhHHHHHHHHHHHHh
Q 046386 487 TSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVY 540 (609)
Q Consensus 487 s~liG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~~~a~~~gs~~~~~i~g~iy 540 (609)
-.+.|++.|..+...+++++|++..|+-+...|+...+..+|..+++.+.+.+.
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.02 E-value=5.9e-06 Score=85.73 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=106.1
Q ss_pred hhHHHHHhcCCc-ccchhhHHHHHhhhhhhhhccchhhhhhhcccchhHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Q 046386 411 LGQIAQSLGESS-RTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSL 489 (609)
Q Consensus 411 ~g~I~~al~~~~-~~~~~VSl~Si~n~~GRl~~g~SD~l~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~~l~~~s~l 489 (609)
...+.++++.+. ......++..+.+.++.+..| ++.||++++|.. .+..++..++.++....++...+.+...+
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g---~l~dr~g~r~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 97 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYG---PISDRVGRRPVI--LVGMSIFMLATLVAVTTSSLTVLIAASAM 97 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHH---HHHTTSCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCchhH--HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344555555533 244567777777888888888 444444433332 23333444555444434455668888999
Q ss_pred HHhhhcchhhhHHHHHHHhhCCCCchhhhhHHHhhhhhHHHHHHHHHHHHhhccCCCCCCcCcccCCCcccccccccHHH
Q 046386 490 IGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLT 569 (609)
Q Consensus 490 iG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~~~a~~~gs~~~~~i~g~iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~t 569 (609)
.|++.|..+...++++.|++..|+.++..|+......+|..+++.+.|.+.|..+ +|.+
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---------------------~~~~ 156 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN---------------------WRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH---------------------HHHH
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc---------------------HHHH
Confidence 9999999999999999999999999999999999999999999999999887542 8888
Q ss_pred HHHHHHHHHHHHH
Q 046386 570 FVLWGCVSVVGLA 582 (609)
Q Consensus 570 F~i~a~~~~~~~~ 582 (609)
|.+.+.++++..+
T Consensus 157 ~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 157 YLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9887776665544
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.29 E-value=0.0013 Score=69.61 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=78.8
Q ss_pred HhhhHHHHHHHHHHHhhccccceeecchhHHHH-HhcCCc-ccchhhHHHHHhhhhhhhhcc-chhhhhhhcccchhHHH
Q 046386 384 LVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQ-SLGESS-RTTTLLTLYSSFSFFGRLLSA-APDYMRAKVYFARTGWL 460 (609)
Q Consensus 384 ~l~~~~Fwll~~~~~~g~g~Glm~I~n~g~I~~-al~~~~-~~~~~VSl~Si~n~~GRl~~g-~SD~l~~~~~~~R~~~l 460 (609)
.+++++||.+...+++....--++..-+..-.+ .++.+. .....+++..+...++++.+| ++|.+ +++|...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~----Grr~~l~~ 78 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL----GLRKYLLW 78 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS----TTCCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchHHHHH
Confidence 578899998777654432111122233333333 355533 456788899999999999999 56554 43444322
Q ss_pred HHHHHHHHH---HHHHHHhcCC-cchhHHHHHHHHhhhcchh----hhHHHHHHHhhCCCCchhhhhHHHhhhhhHHHHH
Q 046386 461 TIALLPTPV---AFCLLATSGN-AVALQAGTSLIGLSSGFIF----AAAVSITSELFGPNSVGVNHNILITNIPIGSLVY 532 (609)
Q Consensus 461 ~~~~~~~~~---~~ll~~~~~~-~~~l~~~s~liG~~yG~~f----~~~P~i~se~FG~k~fg~nyg~~~~a~~~gs~~~ 532 (609)
. .+...+ ..+.....+. ...+.....+.|+..|..+ ++....+.|. .++.+..+|.......+|..++
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~~ 154 (417)
T 2cfq_A 79 I--ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp H--HHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHHH
Confidence 2 111111 1111000000 0112233334444444444 3444444332 1455777777767777888888
Q ss_pred HHHHHHHhh
Q 046386 533 GFLAAIVYD 541 (609)
Q Consensus 533 ~~i~g~iyD 541 (609)
+.+.|.+.|
T Consensus 155 ~~l~~~l~~ 163 (417)
T 2cfq_A 155 ASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888876
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.24 E-value=0.024 Score=60.38 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=75.4
Q ss_pred hhHHHHHhhhhhhhhcc-chhhhhhhcccchhHHHHHHHHHHHHHHHHHHh------------------cCCcchhHHHH
Q 046386 427 LLTLYSSFSFFGRLLSA-APDYMRAKVYFARTGWLTIALLPTPVAFCLLAT------------------SGNAVALQAGT 487 (609)
Q Consensus 427 ~VSl~Si~n~~GRl~~g-~SD~l~~~~~~~R~~~l~~~~~~~~~~~ll~~~------------------~~~~~~l~~~s 487 (609)
..+++.-.-.+|.++++ +.-++.||++ |...+.+..+++.++.++.+. .++...+.+.=
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~G--Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFG--RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 44444434444554432 2334555554 333444444555555444331 23445678888
Q ss_pred HHHHhhhcchhhhHHHHHHHhhCCCCchhhhhHHHhhhhhHHHHHHHHHHHHhhcc
Q 046386 488 SLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSN 543 (609)
Q Consensus 488 ~liG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~~~a~~~gs~~~~~i~g~iyD~~ 543 (609)
.+.|++.|+..++.|++++|..-.++-|...++...++.+|..+...+...+.+..
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG 189 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence 99999999999999999999999999999888888888888877766655554443
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.67 E-value=1.7e+02 Score=23.48 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHhhhcc
Q 046386 567 FLTFVLWGCVSVVGLAASVLL----FLRTRHAYDCFERKRLS 604 (609)
Q Consensus 567 ~~tF~i~a~~~~~~~~~sl~l----~~r~r~~y~~~~~~~~~ 604 (609)
....-+.+++.++|+++-++. ....||-|++..+.|.+
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~ 53 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344555555555443222 23346667766655543
Done!