BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046389
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNE 101
LG T LH+AA G ++ V+ LL Y V D +G T L LAA +G+L++V+++ +
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 102 HLALDRESVDQYLPIHAGAMSGHKEVV 128
++ + + + P+H A GH E+V
Sbjct: 105 D--VNAKDYEGFTPLHLAAYDGHLEIV 129
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V TD+ G T L LAA +G+L++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLK- 68
Query: 100 NEHLALDRESVDQY--LPIHAGAMSGHKEVV 128
D + D Y P+H A +GH E+V
Sbjct: 69 ---YGADVNAWDNYGATPLHLAADNGHLEIV 96
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA G ++ V+ LL Y V D FG+TA ++ +GN DL +++ + N
Sbjct: 113 GFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+AA G ++ V+ LL + V DY G T L LAA G+L++V+++
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
E+K L+ L+ AA++D + E + ++ D ++ +GET LH+ A G ++ V+ LL
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADV--NAIDAIGETPLHLVAMYGHLEIVEVLL 100
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
+ V D FG+TA ++ +GN DL +++ + N
Sbjct: 101 KHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D G T L LAA + +L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 100 NEHLALDRESVDQY--LPIHAGAMSGHKEVV 128
D ++D P+H AM GH E+V
Sbjct: 70 GA----DVNAIDAIGETPLHLVAMYGHLEIV 96
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AA + + + + E+ D V A K G T LH+AA G ++ VK LL V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVL 129
D G+T L LAA +G+L++V+L+ E ++ + + P+H A +GH EVV
Sbjct: 62 -NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 130 YL 131
L
Sbjct: 119 LL 120
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA G ++ VK LL V D G+T L LAA +G+L++V+L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVVLYL 131
++ + + P+H A +GH EVV L
Sbjct: 61 --VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
++K+ + L+ AA + + + + E+ D V A K G T LH+AA G ++ VK LL
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAK-DKNGRTPLHLAARNGHLEVVKLLL 88
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
V D G+T L LAA +G+L++V+L+ E
Sbjct: 89 EAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVS 319
+AA G++E +++L+ E ++ D GRT H+A N +++++L+ E G+ V+
Sbjct: 8 LAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VN 62
Query: 320 RRDYGGNNILHMAG 333
+D G LH+A
Sbjct: 63 AKDKNGRTPLHLAA 76
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVS 319
+AA G++E +++L+ E ++ D GRT H+A N +++++L+ E G+ V+
Sbjct: 41 LAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VN 95
Query: 320 RRDYGGNNILHMAG 333
+D G LH+A
Sbjct: 96 AKDKNGRTPLHLAA 109
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGS 312
+AA G++E +++L+ E ++ D GRT H+A N +++++L+ E G+
Sbjct: 74 LAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 288 GRTMFHIAVLNHQVKILELINEMGSMKDRIVSRRDYGGNNILHMAG 333
GRT H+A N +++++L+ E G+ V+ +D G LH+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAA 43
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 11 KLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL--GYSPQ 68
+L AA + + + + E+ D V AS S G+T LH+AA G + VK LL G P
Sbjct: 7 RLIEAAENGNKDRVKDLLENGAD-VNASDSD-GKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 69 VLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVV 128
D G+T L LAA +G+ ++V+L+ ++ + + D P+H A +GHKEVV
Sbjct: 65 A---KDSDGKTPLHLAAENGHKEVVKLLL--SQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 129 LYLYS 133
L S
Sbjct: 120 KLLLS 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 39 LSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
+S+LG+ + AA G D VK+LL V +D G+T L LAA +G+ ++V+L+
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLL- 57
Query: 99 DNEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYS 133
++ + + D P+H A +GHKEVV L S
Sbjct: 58 -SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 91
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 43 GETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G+T LH+AA G + VK LL G P +D G+T L LA GN ++V+L+
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGADPNT---SDSDGRTPLDLAREHGNEEVVKLL 155
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVS 319
+AAE G+ E +++L+ + +K D G+T H+A N ++++L+ G+ +
Sbjct: 43 LAAENGHKEVVKLLLSQGADPNAKDSD-GKTPLHLAAENGHKEVVKLLLSQGADPN---- 97
Query: 320 RRDYGGNNILHMAG 333
+D G LH+A
Sbjct: 98 AKDSDGKTPLHLAA 111
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AAS G ++ V+ LL V +D G T L LAAA+G+L++V+++ +
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 103 L-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A D D + P+H A GH E+V
Sbjct: 106 VNAYDN---DGHTPLHLAAKYGHLEIV 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V TD G T L LAA++G+L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
++ + P+H A +GH E+V
Sbjct: 70 GAD--VNASDLTGITPLHLAAATGHLEIV 96
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AA + + E + ++ D + L+ G T LH+AA+ G ++ V+ LL + V
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLT--GITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLM 96
D G T L LAA G+L++V+++
Sbjct: 107 -NAYDNDGHTPLHLAAKYGHLEIVEVL 132
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+AA G ++ V+ LL + V D FG+TA ++ +GN DL +++
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 28.9 bits (63), Expect = 7.4, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 187 GKSMMSSYLANQNQQGML-----QNFFSSANVGSTKLSLSHAVLEQAITLVEIIWKEVIR 241
GK ++ + A Q+ + + + ++ N G T L L A + +VE++ K
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHL--AASNGHLEIVEVLLKNGAD 72
Query: 242 SQDSEISTLIERPFQLTFVAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQV 301
S+++ + P L AA G++E + VL++ + ++ +D+ G T H+A +
Sbjct: 73 VNASDLTGIT--PLHL---AAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHL 126
Query: 302 KILELINEMGS 312
+I+E++ + G+
Sbjct: 127 EIVEVLLKHGA 137
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA G ++ VK LL V D G+T L LAA +G+L++V+L+ E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVVLYL 131
++ + + P+H A +GH EVV L
Sbjct: 61 --VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AA + + + + E+ D V A K G T LH+AA G ++ VK LL V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLMTE 98
D G+T L LAA +G+L++V+L+ E
Sbjct: 62 -NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVS 319
+AA G++E +++L+ E ++ D GRT H+A N +++++L+ E G+ V+
Sbjct: 8 LAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VN 62
Query: 320 RRDYGGNNILHMAG 333
+D G LH+A
Sbjct: 63 AKDKNGRTPLHLAA 76
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGS 312
+AA G++E +++L+ E ++ D GRT H+A N +++++L+ E G+
Sbjct: 41 LAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 288 GRTMFHIAVLNHQVKILELINEMGSMKDRIVSRRDYGGNNILHMAG 333
GRT H+A N +++++L+ E G+ V+ +D G LH+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAA 43
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G+T LH+AA G ++ V+ LL + V D G T L LAA G+L++V+++ ++
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLKNGA- 104
Query: 103 LALDRESVDQY--LPIHAGAMSGHKEVV 128
D + D Y P+H A +GH E+V
Sbjct: 105 ---DVNATDTYGFTPLHLAADAGHLEIV 129
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
E+ S + L+ AA+ + E + + D A K+G+T LH+AA G ++ V+ LL
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD--KMGDTPLHLAALYGHLEIVEVLL 100
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
V TD +G T L LAA +G+L++V+++
Sbjct: 101 KNGADV-NATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AAL + E + ++ D V A+ G T LH+AA AG ++ V+ LL Y V
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGAD-VNAT-DTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
D FG+TA ++ +GN DL +++ + N
Sbjct: 140 -NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 261 AAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVSR 320
AA G + +R+L+ + + DD G+T H+A + ++I+E++ + G+ V+
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD----VNA 75
Query: 321 RDYGGNNILHMAGM 334
D G+ LH+A +
Sbjct: 76 ADKMGDTPLHLAAL 89
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 1 ETCEEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVK 60
+ C K + L+ AA + AE + E D + K G T LHVA +D VK
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLE--RDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196
Query: 61 NLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHA 118
LL G SP + G T L +AA +++ + + + + + ESV P+H
Sbjct: 197 LLLPRGGSPHS---PAWNGYTPLHIAAKQNQVEVARSLLQYGG--SANAESVQGVTPLHL 251
Query: 119 GAMSGHKEVV-LYLYSITEGQLDNK 142
A GH E+V L L G L NK
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNK 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 45 TALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
T LHVA+ G + VKNLL G SP V ++ +T L +AA +G+ ++ + + ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKA- 71
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVVLYL 131
++ ++ D P+H A GH +V L
Sbjct: 72 -KVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
+K G T LH+ A G + L+ + V T G T L +A+ GN+ LV+ + +
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQ- 332
Query: 100 NEHLA-LDRESVDQYLPIHAGAMSGHKEVVLYL 131
H A ++ ++ Y P+H A GH ++V L
Sbjct: 333 --HQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 111/282 (39%), Gaps = 24/282 (8%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA G ++ V LL +T G T L +AA G + + +L+ E + H
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAH 171
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNK---DXXXXXXXXXKTDLYEV 159
+ + P+H + ++V L + G + + K + EV
Sbjct: 172 --PNAAGKNGLTPLHVAVHHNNLDIVKLL--LPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227
Query: 160 ALRLFKDHPQLATLRDSNEETALHALA--GKSMMSSYLANQNQQGMLQNFFSSANVGSTK 217
A L + + A T LH A G + M + L ++ G L N G T
Sbjct: 228 ARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-----KSGLTP 281
Query: 218 LSLSHAVLEQAITLVEIIWKEVIRSQDSEISTLIERPFQLTFVAAEKGNIEFLRVLIREY 277
L L E + + +++ K + + + VA+ GNI+ ++ L++
Sbjct: 282 LHL--VAQEGHVPVADVLIKHGVM-----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 278 PYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVS 319
+ +K +G + H A I+ L+ + G+ + + S
Sbjct: 335 ADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA +G ++ V+ LL + V +D FG T L LAA G+L++V+++ ++
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 103 L-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A+D D P+H A G+ E+V
Sbjct: 106 VNAMDS---DGMTPLHLAAKWGYLEIV 129
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG L AA AG+ D V+ L+ V D G T L LAA SG+L++V+++ +
Sbjct: 12 SDLGRKLLE-AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+D V Y P+H A GH E+V
Sbjct: 70 GAD--VDASDVFGYTPLHLAAYWGHLEIV 96
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA G ++ V+ LL + V D FG+TA ++ +GN DL +++ + N
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AA + E + + D V AS G T LH+AA G ++ V+ LL V
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGAD-VDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLM 96
+ D G T L LAA G L++V+++
Sbjct: 107 NAM-DSDGMTPLHLAAKWGYLEIVEVL 132
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA G ++ V+ LL V D+ G T L LAA G+L++V+++ ++
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVV 128
++ ++ + P+H AM GH E+V
Sbjct: 106 --VNANDMEGHTPLHLAAMFGHLEIV 129
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AGR D V+ L+ V D G T L LAA +G+L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 100 NEHLALDRESVDQ--YLPIHAGAMSGHKEVV 128
D +VD P+ A+ GH E+V
Sbjct: 70 GA----DVNAVDHAGMTPLRLAALFGHLEIV 96
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 5 EKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLG 64
+ + ++ L AAL + E + ++ D + G T LH+AA G ++ V+ LL
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME--GHTPLHLAAMFGHLEIVEVLLK 134
Query: 65 YSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
V D FG+TA ++ +GN DL +++ + N
Sbjct: 135 NGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 41 KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
K G T LH+AA G ++ V+ LL V D G T L LAA G+L++V+++ +
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 101 EHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + D Y P+H A GH E+V
Sbjct: 92 ADV--NAKDKDGYTPLHLAAREGHLEIV 117
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNE 101
LG+ L AA AG+ D V+ L+ V D G T L LAA G+L++V+++ +
Sbjct: 2 LGKKLLE-AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 102 HLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + D Y P+H A GH E+V
Sbjct: 60 DV--NAKDKDGYTPLHLAAREGHLEIV 84
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
++K + L+ AA + + E + ++ D V A K G T LH+AA G ++ V+ LL
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAK-DKDGYTPLHLAAREGHLEIVEVLL 121
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
V D FG+T LA +GN D+ +++ +
Sbjct: 122 KAGADV-NAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 41 KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
K G T LH+AA G ++ V+ LL V D G T L LAA G+L++V+++ +
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 101 EHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + D Y P+H A GH E+V
Sbjct: 92 ADV--NAKDKDGYTPLHLAAREGHLEIV 117
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNE 101
LG+ L AA AG+ D V+ L+ V D G T L LAA G+L++V+++ +
Sbjct: 2 LGKKLLE-AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 102 HLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + D Y P+H A GH E+V
Sbjct: 60 DV--NAKDKDGYTPLHLAAREGHLEIV 84
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
++K + L+ AA + + E + ++ D V A K G T LH+AA G ++ V+ LL
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAK-DKDGYTPLHLAAREGHLEIVEVLL 88
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQY--LPIHAGAM 121
V D G T L LAA G+L++V+++ + D + D++ P
Sbjct: 89 KAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTPFDLAIR 143
Query: 122 SGHKEV 127
GH+++
Sbjct: 144 EGHEDI 149
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 41 KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
K G T LH+AA G ++ V+ LL V D G T L LAA G+L++V+++ +
Sbjct: 45 KDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 101 EHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + D Y P+H A GH E+V
Sbjct: 104 ADV--NAKDKDGYTPLHLAAREGHLEIV 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D G T L LAA G+L++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + D Y P+H A GH E+V
Sbjct: 70 GADV--NAKDKDGYTPLHLAAREGHLEIV 96
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
++K + L+ AA + + E + ++ D V A K G T LH+AA G ++ V+ LL
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAK-DKDGYTPLHLAAREGHLEIVEVLL 133
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
V D FG+TA ++ +GN DL +++
Sbjct: 134 KAGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 11 KLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQVL 70
+L AA + + + + E+ D V AS S G T LH AA G + VK L+ V
Sbjct: 7 RLIEAAENGNKDRVKDLIENGAD-VNASDSD-GRTPLHYAAKEGHKEIVKLLISKGADV- 63
Query: 71 KLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLY 130
D G+T L AA G+ ++V+L+ + + + D P+H A GHKE+V
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV--NAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 131 LYS 133
L S
Sbjct: 122 LIS 124
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 39 LSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
+S+LG+ + AA G D VK+L+ V +D G+T L AA G+ ++V+L+
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLIS 58
Query: 99 DNEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYS 133
+ + + D P+H A GHKE+V L S
Sbjct: 59 KGADV--NAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 29 ESHEDYVKASLSKL---------GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQT 79
E H++ VK +SK G T LH AA G + VK L+ V +D G+T
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NTSDSDGRT 138
Query: 80 ALSLAAASGNLDLVQLM 96
L LA GN ++V+L+
Sbjct: 139 PLDLAREHGNEEIVKLL 155
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA+ G ++ V+ LL + V D G T L LAA G+L++V+++ +
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGA- 104
Query: 103 LALDRESVDQY--LPIHAGAMSGHKEVV 128
D +VD + P+H A+ GH E+V
Sbjct: 105 ---DVNAVDTWGDTPLHLAAIMGHLEIV 129
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AAL + E + + D ++ G+T LH+AA G ++ V+ LL + V
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADV--NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
D FG+TA ++ +GN DL +++ + N
Sbjct: 140 -NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 5 EKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLG 64
+ S L+ L+ AA + E + + D ++ +G T LH+AA G ++ V+ LL
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADV--NAIDIMGSTPLHLAALIGHLEIVEVLLK 101
Query: 65 YSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
+ V D +G T L LAA G+L++V+++
Sbjct: 102 HGADV-NAVDTWGDTPLHLAAIMGHLEIVEVL 132
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V TD G T L LAA G+L++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 100 NEHLALDRESVD--QYLPIHAGAMSGHKEVV 128
D ++D P+H A+ GH E+V
Sbjct: 70 GA----DVNAIDIMGSTPLHLAALIGHLEIV 96
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G+T LH+AA G ++ V+ LL V L D+ G T L LAA G+L++V+++ +
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVV 128
+ D +++ P+H A +GH E+V
Sbjct: 106 VNAD-DTIGS-TPLHLAADTGHLEIV 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
+G T LH+AA G ++ V+ LL Y V D FG+TA ++ +GN DL +++
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+AA G ++ V+ LL Y V D G T L LAA +G+L++V+++
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D +G T L LAA G+L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 100 NEHL-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ ALD P+H A GH E+V
Sbjct: 70 GADVNALD---FSGSTPLHLAAKRGHLEIV 96
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA+ G ++ V+ LL + V D G T L LAA G+L++V+++ +
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGA- 104
Query: 103 LALDRESVDQY--LPIHAGAMSGHKEVV 128
D +VD + P+H A+ GH E+V
Sbjct: 105 ---DVNAVDTWGDTPLHLAAIMGHLEIV 129
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AAL + E + + D ++ G+T LH+AA G ++ V+ LL + V
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADV--NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
D FG+TA ++ +GN DL +++ + N
Sbjct: 140 -NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V TD G T L LAA G+L++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 100 NEHL-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A+D + P+H A+ GH E+V
Sbjct: 70 GADVNAID---IXGSTPLHLAALIGHLEIV 96
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 5 EKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLG 64
+ S L+ L+ AA + E + + D ++ G T LH+AA G ++ V+ LL
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADV--NAIDIXGSTPLHLAALIGHLEIVEVLLK 101
Query: 65 YSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
+ V D +G T L LAA G+L++V+++
Sbjct: 102 HGADV-NAVDTWGDTPLHLAAIMGHLEIVEVL 132
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D G T L LAA SG+L++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ D V + P+H AM+GH E+V
Sbjct: 70 GADV--DAADVYGFTPLHLAAMTGHLEIV 96
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMT 97
++ G T LH+AA +G ++ V+ LL + V D +G T L LAA +G+L++V+++
Sbjct: 42 AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 98 EDNEHLALDRESVDQY--LPIHAGAMSGHKEVV 128
+ D + D P+H A GH E+V
Sbjct: 101 K----YGADVNAFDMTGSTPLHLAADEGHLEIV 129
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 5 EKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLG 64
+ + L+ L+ AA+ + E + + D A + G T LH+AA G ++ V+ LL
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV--YGFTPLHLAAMTGHLEIVEVLLK 101
Query: 65 YSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
Y V D G T L LAA G+L++V+++
Sbjct: 102 YGADVNAF-DMTGSTPLHLAADEGHLEIVEVL 132
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 9 LSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQ 68
+ L+ AA+ + E + + D ++ G T LH+AA G ++ V+ LL Y
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 69 VLKLTDYFGQTALSLAAASGNLDLVQ 94
V D FG+TA ++ +GN DL +
Sbjct: 139 V-NAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNE 101
G T LH+ + G ++ ++ LL Y+ V +D G T L LAA G+L++V+++ +
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 102 HL-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A+D + Y P+H A GH E+V
Sbjct: 105 DVNAMDYQG---YTPLHLAAEDGHLEIV 129
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 5 EKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLG 64
+KS + L+ AA + E + + D ++ G T LH+AA G ++ V+ LL
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADV--NAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 65 YSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
Y V D FG+TA ++ +GN DL +++ + N
Sbjct: 135 YGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D+FG T L L +G+L++++++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLK- 68
Query: 100 NEHLALDRESVDQ--YLPIHAGAMSGHKEVV 128
A D + D+ + P+H A GH E+V
Sbjct: 69 ---YAADVNASDKSGWTPLHLAAYRGHLEIV 96
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 232 VEIIWKEVIRSQDSEISTLIERPFQLTFVAAEKGNIEFLRVLIREYPYIISKHDDMGRTM 291
+EI+ EV+ ++++ + + + +AAE G++E + VL++ Y ++ D G+T
Sbjct: 93 LEIV--EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK-YGADVNAQDKFGKTA 149
Query: 292 FHIAVLNHQVKILELINEM 310
F I++ N + E++ ++
Sbjct: 150 FDISIDNGNEDLAEILQKL 168
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 11 KLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQVL 70
+L AA + + + + E+ D V AS S G T LH AA G + VK L+ V
Sbjct: 7 RLIEAAENGNKDRVKDLIENGAD-VNASDSD-GRTPLHHAAENGHKEVVKLLISKGADV- 63
Query: 71 KLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLY 130
D G+T L AA +G+ ++V+L+ + + + D P+H A +GHKEVV
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV--NAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 131 LYS 133
L S
Sbjct: 122 LIS 124
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 39 LSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
+S+LG+ + AA G D VK+L+ V +D G+T L AA +G+ ++V+L+
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLIS 58
Query: 99 DNEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYS 133
+ + + D P+H A +GHKEVV L S
Sbjct: 59 KGADV--NAKDSDGRTPLHHAAENGHKEVVKLLIS 91
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 31 HEDYVKASLSK---------LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTAL 81
H++ VK +SK G T LH AA G + VK L+ V +D G+T L
Sbjct: 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPL 140
Query: 82 SLAAASGNLDLVQLM 96
LA GN ++V+L+
Sbjct: 141 DLAREHGNEEVVKLL 155
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 261 AAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVSR 320
AAE G+ E +++LI + + +K D GRT H A N ++++L+ G+ V+
Sbjct: 44 AAENGHKEVVKLLISKGADVNAKDSD-GRTPLHHAAENGHKEVVKLLISKGAD----VNA 98
Query: 321 RDYGGNNILHMAG 333
+D G LH A
Sbjct: 99 KDSDGRTPLHHAA 111
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA+ G+++ V+ LL V +D G T L LAA G+L++V+++ +
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 103 L-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A DR + P+H A+SG E+V
Sbjct: 98 VNAYDRAG---WTPLHLAALSGQLEIV 121
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNE 101
LG+ L AA+AG+ D V+ L+ V TD G T L LAAA+G L++V+++ ++
Sbjct: 6 LGKKLLE-AAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 102 HL-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A D + P+H A GH E+V
Sbjct: 64 DVNASDSAGIT---PLHLAAYDGHLEIV 88
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 43 GETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH AA G + VK LL G P D G+T L AA +G+ ++V+L+
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Query: 101 EHLALDRESVDQYLPIHAGAMSGHKEVVLYLYS 133
+ + D P+H A +GHKE+V L S
Sbjct: 94 ADP--NAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 39 LSKLGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
+S+LG+ + AA G D VK+LL G P +D G+T L AA +G+ ++V+L+
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLL 56
Query: 97 TEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYS 133
+ + D P+H A +GHKE+V L S
Sbjct: 57 LSKGADP--NAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 31 HEDYVKASLSK---------LGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQT 79
H++ VK LSK G T LH AA G + VK LL G P +D G+T
Sbjct: 82 HKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNT---SDSDGRT 138
Query: 80 ALSLAAASGNLDLVQLM 96
L LA GN ++V+L+
Sbjct: 139 PLDLAREHGNEEIVKLL 155
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA G ++ V+ LL V D G T L LAA G+L++V+++ ++
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVV 128
++ + P+H A GH E+V
Sbjct: 106 --VNASDSHGFTPLHLAAKRGHLEIV 129
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 9 LSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQ 68
++ L+ AA + E + ++ D V AS S G T LH+AA G ++ V+ LL
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGAD-VNASDSH-GFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 69 VLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
V D FG+TA ++ +GN DL +++ + N
Sbjct: 139 V-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D+ G T L LAA G+L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 100 NEHL-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A D V P+H A GH E+V
Sbjct: 70 GADVNAKDSLGVT---PLHLAARRGHLEIV 96
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 5 EKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLG 64
+ + ++ L+ AA + E + + D V AS S G T LH+AA+ G ++ V+ LL
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDS-WGRTPLHLAATVGHLEIVEVLLE 101
Query: 65 YSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
Y V D FG+TA ++ +GN DL +++ + N
Sbjct: 102 YGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L A AG+ D V+ L+ V + D G T L LAA G+L++V+++ +
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKH 69
Query: 100 NEHLALDRESVDQY--LPIHAGAMSGHKEVV 128
D + D + P+H A GH E+V
Sbjct: 70 GA----DVNASDSWGRTPLHLAATVGHLEIV 96
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGS 312
+AA++G++E + VL++ + ++ D GRT H+A ++I+E++ E G+
Sbjct: 53 LAAKRGHLEIVEVLLK-HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 14 RAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLT 73
RA DD+ + I ++ V AS +G T LH+AA G ++ V+ LL V
Sbjct: 23 RAGQDDEVR----ILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADV-NAD 76
Query: 74 DYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVV 128
D G T L LAA G+L++V+++ ++ + + + + P+H A GH E+V
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH--NGFTPLHLAANIGHLEIV 129
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V +D+ G T L LAA G+L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ D +S+ P+H A GH EVV
Sbjct: 70 GADVNAD-DSLG-VTPLHLAADRGHLEVV 96
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA+ G ++ V+ LL + V D FG+TA ++ +GN DL +++ + N
Sbjct: 113 GFTPLHLAANIGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 35.4 bits (80), Expect = 0.083, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AA + E + ++ D V A S LG T LH+AA G ++ V+ LL V
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGAD-VNADDS-LGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLM 96
D+ G T L LAA G+L++V+++
Sbjct: 107 -NANDHNGFTPLHLAANIGHLEIVEVL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA+ G ++ V+ LL Y V D FG+TA ++ +GN DL +++ + N
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMT 97
++ G T LH+AA G ++ V+ LL + V D +G+T L LAA G+L++V+++
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 98 E 98
E
Sbjct: 101 E 101
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L A AG+ D V+ L+ V + D G T L LAA G+L++V+++ +
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKH 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + P+H A GH E+V
Sbjct: 70 GADV--NARDIWGRTPLHLAATVGHLEIV 96
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGS 312
+AA++G++E + VL++ + ++ D GRT H+A ++I+E++ E G+
Sbjct: 53 LAAKRGHLEIVEVLLK-HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA+ G ++ V+ LL Y V D FG+TA ++ +GN DL +++ + N
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMT 97
++ G T LH+AA G ++ V+ LL + V +D +G+T L LAA G+L++V+++
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 98 E 98
E
Sbjct: 101 E 101
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L A AG+ D V+ L+ V + D G T L LAA G+L++V+++ +
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDA-GVTPLHLAAKRGHLEIVEVLLKH 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + + P+H A GH E+V
Sbjct: 70 GADV--NASDIWGRTPLHLAATVGHLEIV 96
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGS 312
+AA++G++E + VL++ + ++ D GRT H+A ++I+E++ E G+
Sbjct: 53 LAAKRGHLEIVEVLLK-HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNE 101
+G T LH+AA G ++ V+ LL V D G T L LAA G+L++V+++ ++
Sbjct: 46 VGWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 102 HL-ALDRESVDQYLPIHAGAMSGHKEVV 128
+ A D + P+H A GH E+V
Sbjct: 105 DVNAKDDNGIT---PLHLAANRGHLEIV 129
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA+ G ++ V+ LL Y V D FG+TA ++ +GN DL +++ + N
Sbjct: 113 GITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AGR D V+ L+ V D G T L LAA G+L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 100 NEHLALDRESVDQY--LPIHAGAMSGHKEVV 128
D + D P+H A GH E+V
Sbjct: 70 ----GADVNAYDTLGSTPLHLAAHFGHLEIV 96
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
LG T LH+AA G ++ V+ LL V D G T L LAA G+L++V+++
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVL 132
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA G + V+ LL + V D G T L LAA +G+L++V+++ +
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLK---- 101
Query: 103 LALDRESVDQY--LPIHAGAMSGHKEVV 128
D + D Y P+H A GH E+V
Sbjct: 102 YGADVNAQDAYGLTPLHLAADRGHLEIV 129
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+AA G ++ V+ LL Y V D +G T L LAA G+L++V+++
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVL 132
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA G ++ V+ LL + V D FG+TA ++ +GN DL +++ + N
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D G T L LAA G+ ++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKH 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + D + P+H A +GH E+V
Sbjct: 70 GADV--NARDTDGWTPLHLAADNGHLEIV 96
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 261 AAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDRIVSR 320
AA G + +R+L+ + + HDD G T H+A +I+E++ + G+ V+
Sbjct: 21 AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD----VNA 75
Query: 321 RDYGGNNILHMAG 333
RD G LH+A
Sbjct: 76 RDTDGWTPLHLAA 88
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
SK G T LH AA G + VK LL V G T L LAA +G+ ++V+L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVVLYL 131
++ S D P H +GH E+V L
Sbjct: 65 GAD--VNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 43 GETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
GET LH+A+ G I V+ LL G P V D+ G T L A G+L +V+L+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLL--- 63
Query: 101 EHLAL-DRESVDQYLPIHAGAMSGHKEVVLYLYS 133
+H AL + P+H A +GH ++V L S
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
+L + G T LH+AA G ++ V+ LL Y V D FG T L LAA G+L++V+++
Sbjct: 42 ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVL 99
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 5 EKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLG 64
++ L+ L+ AA + E + + D V A G T LH+AA G ++ V+ LL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAE-DNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 65 YSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
+ V D FG+TA ++ +GN DL +++ + N
Sbjct: 102 HGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V L D G T L LAA G+L++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAL-DEDGLTPLHLAAQLGHLEIVEVLLK- 68
Query: 100 NEHLALDRESVDQY--LPIHAGAMSGHKEVV 128
D + D + P+H A+ GH E+V
Sbjct: 69 ---YGADVNAEDNFGITPLHLAAIRGHLEIV 96
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 9 LSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQ 68
L+ LY A + E + ++ D ++ +G T LH+AA G ++ + LL +
Sbjct: 48 LTPLYLATAHGHLEIVEVLLKNGADV--NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Query: 69 VLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
V D FG+TA ++ +GN DL +++ + N
Sbjct: 106 V-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 45/115 (39%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLT----------------------------- 73
G + LH+AASAGR + VK LLG QV +
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 74 ---DYFGQTALSLAAASGNLDLVQLM-----------TEDNE--HLALDRESVDQ 112
D++ TA+ AAA GNL ++ ++ TE N HLA D E V++
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 188
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 45/115 (39%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLT----------------------------- 73
G + LH+AASAGR + VK LLG QV +
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 74 ---DYFGQTALSLAAASGNLDLVQLM-----------TEDNE--HLALDRESVDQ 112
D++ TA+ AAA GNL ++ ++ TE N HLA D E V++
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 187
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 19 DDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQ 78
DD +T +F + A S+ G+TAL +A S GR+D VK LL V + D G
Sbjct: 161 DDIETVLQLFRLGN--INAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGS 217
Query: 79 TALSLAAASGNLDLVQLM 96
TAL A G+ ++ L+
Sbjct: 218 TALMCACEHGHKEIAGLL 235
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA+ G ++ V+ LL V D G T L LAA+ G+L++V+++ +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 103 LALDRESVDQYLPIHAGAMSGHKEVV 128
++ + P++ A GH E+V
Sbjct: 94 --VNAKDATGITPLYLAAYWGHLEIV 117
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 42 LGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNE 101
LG+ L AA AG+ D V+ L+ D++G+T L +AAA G+L++V+++ +
Sbjct: 2 LGKKLLE-AARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA 59
Query: 102 HLALDRESVDQ--YLPIHAGAMSGHKEVV 128
D +VD P+H A GH E+V
Sbjct: 60 ----DVNAVDTNGTTPLHLAASLGHLEIV 84
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+AAS G ++ V+ LL Y V D G T L LAA G+L++V+++
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVL 120
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 45 TALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLA 104
+ LH A G + VK LL + QV +T + T L A SG+ D V L+ + H A
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADW-HTPLFNACVSGSWDCVNLLLQ---HGA 93
Query: 105 LDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNK 142
+ D PIH A GH E V L + G +D+K
Sbjct: 94 SVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHK 130
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 37 ASLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
A+ K G T LH+AA G ++ VK LL V D FG+TA ++ +GN DL +++
Sbjct: 51 AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
S LG+ L AA AG+ D V+ L+ V D G T L LAA +G+L++V+L+ E
Sbjct: 22 SDLGKKLLE-AARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLE 78
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 45 TALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLA 104
+ LH A G + VK LL + QV +T + T L A SG+ D V L+ + H A
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADW-HTPLFNACVSGSWDCVNLLLQ---HGA 149
Query: 105 LDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNK 142
+ D PIH A GH E V L + G +D+K
Sbjct: 150 SVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHK 186
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 37 ASLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
A+ K G T LH+AA G ++ VK LL V D FG+TA ++ +GN DL +++
Sbjct: 33 AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
S LG+ L AA AG+ D V+ L+ V D G T L LAA +G+L++V+L+ E
Sbjct: 4 SDLGKKLLE-AARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQL 95
++++ G T LH AAS R + LL G +P D++ TA+ AAA GNL +V +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHI 157
Query: 96 M-----------TEDNE--HLALDRESVDQ 112
+ TE N HLA D E V++
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 45 TALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLA 104
TALH A SAG + V+ LL V D G + L +AA++G ++V+ + H+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHV- 99
Query: 105 LDRESVDQ--YLPIHAGAMSGHKEVVLYLY--SITEGQLDNKDXXXXXXXXXKTDLYEVA 160
+V+Q P+H A E+ + L D+ D K +L V
Sbjct: 100 ---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 161 LRLFKDHPQLATLRDSNEETALH 183
+ LF + ++D+ T LH
Sbjct: 157 ILLF--YKASTNIQDTEGNTPLH 177
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQL 95
++++ G T LH AAS R + LL G +P D++ TA+ AAA GNL +V +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHI 157
Query: 96 M-----------TEDNE--HLALDRESVDQ 112
+ TE N HLA D E V++
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 45 TALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLA 104
TALH A SAG + V+ LL V D G + L +AA++G ++V+ + H+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV- 99
Query: 105 LDRESVDQ--YLPIHAGAMSGHKEVVLYLY--SITEGQLDNKDXXXXXXXXXKTDLYEVA 160
+V+Q P+H A E+ + L D+ D K +L V
Sbjct: 100 ---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 161 LRLFKDHPQLATLRDSNEETALH 183
+ LF + ++D+ T LH
Sbjct: 157 ILLF--YKASTNIQDTEGNTPLH 177
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDN 100
G T LH+AA G ++ V+ LL + V D FG+TA ++ +GN DL +++ + N
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 35.8 bits (81), Expect = 0.066, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L+ V D G T L LAA +L++V+++ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
+ + D P+H A+ GH E+V
Sbjct: 70 GADV--NAHDNDGSTPLHLAALFGHLEIV 96
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+AA ++ V+ LL + V D G T L LAA G+L++V+++
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVL 99
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 260 VAAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGS 312
+AA+ ++E + VL++ + ++ HD+ G T H+A L ++I+E++ + G+
Sbjct: 53 LAADYDHLEIVEVLLK-HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 10 SKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQV 69
+ L+ AA+ + E + ++ D V A+ G T LH+AA A ++ V+ LL + V
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGAD-VNAT-GNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 70 LKLTDYFGQTALSLAAASGNLDLVQLMTE 98
D FG+TA ++ +GN DL +++ +
Sbjct: 107 -NAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S LG+ L AA AG+ D V+ L V DY+G T L LAA G+L++V+++ ++
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVV 128
++ P+H A + H E+V
Sbjct: 70 GAD--VNATGNTGRTPLHLAAWADHLEIV 96
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKA-SLSKLGETALHV---AASAGRIDFV 59
EE +L AA D Q + H + V +L++ G+TAL V + A ++ +
Sbjct: 4 EEVCVGDRLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFGSPAVALELL 61
Query: 60 KNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHL-ALDRESVDQYLPIHA 118
K G SP V D G + + AA +G LD ++++ E + ALD LPIH
Sbjct: 62 KQ--GASPNV---QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG---SLPIHL 113
Query: 119 GAMSGHKEVVLYLYSITEGQLDNKD 143
GH VV +L E L ++D
Sbjct: 114 AIREGHSSVVSFLA--PESDLHHRD 136
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 23 TAETIFESHEDYVKASLS-----KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFG 77
T I+E + V+A K T LH AA RID VK + V +L
Sbjct: 17 TQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN 76
Query: 78 QTALSLAAASGNLDL-VQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYSITE 136
T L A G+L + VQLM + +D E IH A GH +V YL I +
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS---CIHLAAQFGHTSIVAYL--IAK 131
Query: 137 GQ 138
GQ
Sbjct: 132 GQ 133
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKA-SLSKLGETALHV---AASAGRIDFV 59
EE +L AA D Q + H + V +L++ G+TAL V + A ++ +
Sbjct: 6 EEVCVGDRLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFGSPAVALELL 63
Query: 60 KNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHL-ALDRESVDQYLPIHA 118
K G SP V D G + + AA +G LD ++++ E + ALD LPIH
Sbjct: 64 KQ--GASPNV---QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG---SLPIHL 115
Query: 119 GAMSGHKEVVLYLYSITEGQLDNKD 143
GH VV +L E L ++D
Sbjct: 116 AIREGHSSVVSFLA--PESDLHHRD 138
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 25/120 (20%)
Query: 1 ETCE--EKSTLSK--LYRAALDDDWQTAETIFESHEDYV-KASLSKL--GETALHVAASA 53
E CE ++ + + L+ AAL D+ + A + E+ + V + S+L G+TALH+A
Sbjct: 26 EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN 85
Query: 54 GRIDFVKNLLG---------------YSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
++ V+ LL Y P L Y+G+ LS AA G+ ++V+L+ E
Sbjct: 86 QNVNLVRALLARGASVSARATGSVFHYRPHNLI---YYGEHPLSFAACVGSEEIVRLLIE 142
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 10 SKLYRAALDDDWQTAETI--FESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSP 67
S L AA ++D Q + FE E + + ++ GETALH+AA ++ L+ +P
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAM---GETALHIAALYDNLEAAMVLMEAAP 61
Query: 68 QVL--KLTD--YFGQTALSLAAASGNLDLVQ 94
+++ +T Y GQTAL +A + N++LV+
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 174 RDSNEETALH--ALAGKSMMSSYLANQNQQGMLQNFFSSANVGSTKLSLSHAVLEQAITL 231
R + ETALH AL + L + + + S G T L + AV+ Q + L
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI--AVINQNVNL 90
Query: 232 VE-IIWKEVIRSQDSEISTLIERPFQLTF-------VAAEKGNIEFLRVLIREYPYIISK 283
V ++ + S + S RP L + AA G+ E +R+LI E+ I
Sbjct: 91 VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI-EHGADIRA 149
Query: 284 HDDMGRTMFHIAVL 297
D +G T+ HI +L
Sbjct: 150 QDSLGNTVLHILIL 163
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
L K G TAL+ A G D V+ L L + G TAL AA G D+VQL+
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 41 KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
K G T LH+AA G ++ V+ LL V D FG+TA ++ +GN DL +++ +
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 89
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKA-SLSKLGETALHV---AASAGRIDFV 59
EE +L AA D Q + H + V +L++ G+TAL V ++A ++ +
Sbjct: 4 EEVRAGDRLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFGSTAIALELL 61
Query: 60 KNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAG 119
K G SP V D G + + AA +G LD ++++ E + + + LPIH
Sbjct: 62 KQ--GASPNV---QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLA 114
Query: 120 AMSGHKEVVLYLYSITEGQLDNKD 143
GH VV +L + E L +D
Sbjct: 115 VQEGHTAVVSFLAA--ESDLHRRD 136
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 42 LGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
G TAL V G + + LL G +P L D G + AA +G LD +Q + E+
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEN 92
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNKD 143
+ + E + LP+H A GH VV +L T + +++
Sbjct: 93 QADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
++++ + ++ AA T +T+ E+ D V ++ G LH+AA G + V+ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNE-GNLPLHLAAKEGHLRVVEFLV 123
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
++ + ++ G TA LA G ++V LM
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 21 WQTAETIFESHEDYVKASLSKLGETALHVAA-SAGRIDFVKNLLGYSPQVLKLTDYFGQT 79
W +ET E K + K + A+ +AA S+G + V LL + + G T
Sbjct: 17 WIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLT 75
Query: 80 ALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYS 133
AL A N+D+V+ + E+ ++ ++ + ++P+HA A G+ ++ YL S
Sbjct: 76 ALHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLIS 127
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
+K G TALHVAA+ G + +K LL + + + DY G T L AA G + +++ E+
Sbjct: 196 AKSGGTALHVAAAKGYTEVLK-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 42 LGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
G TAL V G + + LL G +P L D G + AA +G LD +Q + E
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPD---LKDRTGNAVIHDAARAGFLDTLQTLLEF 92
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNKD 143
+ + E + LP+H A GH VV +L T + +++
Sbjct: 93 QADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G LH+AA G + V+ L+ ++ + ++ G TA LA G ++V LM
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 42 LGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
G TAL V G + + LL G +P L D G + AA +G LD +Q + E
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGQLDTLQTLLEF 92
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNKD 143
+ + E + LP+H A GH VV +L T + +++
Sbjct: 93 QADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 4 EEKSTLSKLYRAALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLL 63
++++ + ++ AA T +T+ E D V ++ G LH+AA G + V+ L+
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNE-GNLPLHLAAKEGHLRVVEFLV 123
Query: 64 GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
++ + ++ G TA LA G ++V LM
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 11 KLYRAALDDDWQTAETIFESHEDYVKA-SLSKLGETALHV---AASAGRIDFVKNLLGYS 66
+L AA D Q + H + V +L++ G+TAL V ++A ++ +K G S
Sbjct: 5 RLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFGSTAIALELLKQ--GAS 60
Query: 67 PQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKE 126
P V D G + + AA +G LD ++++ E + + + LPIH GH
Sbjct: 61 PNV---QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQEGHTA 115
Query: 127 VVLYLYSITEGQLDNKD 143
VV +L + E L +D
Sbjct: 116 VVSFLAA--ESDLHRRD 130
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G TALH AA VK L+G D G+T + LAA G +++V +
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 42 LGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
G TAL V G + + LL G +P L D G + AA +G LD +Q + E
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEF 92
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNKD 143
+ + E + LP+H A GH VV +L T + +++
Sbjct: 93 QADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G LH+AA G + V+ L+ ++ + ++ G TA LA G ++V LM
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 42 LGETALHVAASAGRIDFVKNLL--GYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
G TAL V G + + LL G +P L D G + AA +G LD +Q + E
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEF 92
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVVLYLYSITEGQLDNKD 143
+ + E + LP+H A GH VV +L T + +++
Sbjct: 93 QADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G LH+AA G + V+ L+ ++ + ++ G TA LA G ++V LM
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 34 YVKASL----SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGN 89
Y ASL + GETALH+AA R D K LL S + D G+T L A ++
Sbjct: 44 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADA 102
Query: 90 LDLVQLMTEDNEHLALDRESVDQYLPI 116
+ Q++ N LD D P+
Sbjct: 103 QGVFQILIR-NRATDLDARMHDGTTPL 128
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 34 YVKASL----SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGN 89
Y ASL + GETALH+AA R D K LL S + D G+T L A ++
Sbjct: 45 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADA 103
Query: 90 LDLVQLMTEDNEHLALDRESVDQYLPI 116
+ Q++ N LD D P+
Sbjct: 104 QGVFQILIR-NRATDLDARMHDGTTPL 129
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSP--QVLKLTDYFGQTALSLAAASGNLDLVQ 94
G+TALH+A F+ LLG+S + L L + GQTAL LAA G V+
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSP--QVLKLTDYFGQTALSLAAASGNLDLVQ 94
G+TALH+A F+ LLG+S + L L + GQTAL LAA G V+
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 43 GETALHVAASAGRIDFVKNLL--GYSPQ---VLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+A G + V L +P +LK T+Y G T L LA+ G L +V+L+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+A+ G + V+ L+ V G+TAL LA N DLV L+
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 34 YVKASL----SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGN 89
Y ASL + GETALH+AA R D K LL S + D G+T L A ++
Sbjct: 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADA 70
Query: 90 LDLVQLMTEDNEHLALDRESVDQYLPI 116
+ Q++ N LD D P+
Sbjct: 71 QGVFQILIR-NRATDLDARMHDGTTPL 96
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 43 GETALHVAASAGRIDFVKNLL--GYSPQ---VLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+A G + V L +P +LK T+Y G T L LA+ G L +V+L+
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
G T LH+A+ G + V+ L+ V G+TAL LA N DLV L+
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 167
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 261 AAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEM 310
AAEKG++E L++L+ E ++ D+MGR A+L+ +E I +
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 261 AAEKGNIEFLRVLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEM 310
AAEKG++E L++L+ E ++ D+MGR A+L+ +E I +
Sbjct: 175 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 224
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 212 NVGSTKLSLSHAVLEQAITLVEIIWKEVIRSQDSEISTLIERPFQLTFVAAEKGNIEFLR 271
N+G +L HA+L + VE I ++ ++++ ER +A EK ++ ++
Sbjct: 200 NMGRN--ALIHALLSSDDSDVEAI-THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256
Query: 272 VLIREYPYIISKHDDMGRTMFHIAVLNHQVKILELINEMGSMKDR----IVSRRDY 323
L+ + I+ D G+T +AV KI EL+ + G+ D + +RR+Y
Sbjct: 257 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNY 312
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 38 SLSKLGETALHVAASAGRIDFVKNLLGYS--PQVLKLTDYFGQTALSLAAASGNLDLVQL 95
+L LG+TALH AA AG + + LL Y P ++ L + AA GN + Q+
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT-------AAQMGNEAVQQI 327
Query: 96 MTE 98
++E
Sbjct: 328 LSE 330
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 34 YVKASL----SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGN 89
Y ASL + GETALH+AA R D K LL S + D G+T L A ++
Sbjct: 9 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHAAVSADA 67
Query: 90 LDLVQLMTEDNEHLALDRESVDQYLPI 116
+ Q++ N LD D P+
Sbjct: 68 QGVFQILLR-NRATDLDARMHDGTTPL 93
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 43 GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEH 102
G T LH+AA G + V+ LL + D G T + A ++DLV+L+
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 103 LALDRESVDQYLPIHAGAMSG 123
+ + R++ ++ + +H A SG
Sbjct: 137 INI-RDN-EENICLHWAAFSG 155
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 41 KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
K + LH AAS G + ++ L G + D G T L A A G+ D L+ E
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 35 VKASLSKL---GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLD 91
+K L+K+ G T LH+A + + L+ V ++ D F Q L AA+ G+L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK 154
Query: 92 LVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLYL---YSITEGQLDNK 142
L++L+ + A++ + + P+ GH + + L Y +DNK
Sbjct: 155 LIELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 41 KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
K + LH AAS G + ++ L G + D G T L A A G+ D L+ E
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 35 VKASLSKL---GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLD 91
+K L+K+ G T LH+A + + L+ V ++ D F Q L AA+ G+L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK 154
Query: 92 LVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLYL---YSITEGQLDNK 142
L++L+ + A++ + + P+ GH + + L Y +DNK
Sbjct: 155 LIELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 41 KLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
K + LH AAS G + ++ L G + D G T L A A G+ D L+ E
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 35 VKASLSKL---GETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLD 91
+K L+K+ G T LH+A + + L+ V ++ D F Q L AA+ G+L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK 154
Query: 92 LVQLMTEDNEHLALDRESVDQYLPIHAGAMSGHKEVVLYL---YSITEGQLDNK 142
L++L+ + A++ + + P+ GH + + L Y +DNK
Sbjct: 155 LIELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 34 YVKASL----SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGN 89
Y ASL + G TALH+AA+ R D K LL S + D G+T L A ++
Sbjct: 44 YQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADA 102
Query: 90 LDLVQLMTEDNEHLALDRESVDQYLPI 116
+ Q++ N LD D P+
Sbjct: 103 QGVFQILIR-NRATDLDARMHDGTTPL 128
>pdb|2PTG|A Chain A, Crystal Structure Of Eimeria Tenella Enoyl Reductase
pdb|2PTG|B Chain B, Crystal Structure Of Eimeria Tenella Enoyl Reductase
Length = 319
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 16 ALDDDWQTAETIFESHEDYVKASLSKLGETALHVAASAGRIDFVKNLLGYSPQVLKL--- 72
A+ D Q S++ Y + E A V A G+ID + + L P+V K
Sbjct: 94 AVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQ 153
Query: 73 TDYFGQTALSLAAASGNLDLVQ----LMTEDNEHLALDRESVDQYLPIHAGAMSGHK 125
T G A +++ + L+Q LM E LAL + ++ +P + G MS K
Sbjct: 154 TSRKGYLAAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPGYGGGMSSAK 210
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 50 AASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTEDNEHLALD-RE 108
AA AG+ D V+ L+ TD+ G + L LAA G+ +++ ++ D R
Sbjct: 9 AARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDART 64
Query: 109 SVDQYLPIHAGAMSGHKEVVLYL 131
VD+ P+H A GH +V L
Sbjct: 65 KVDRT-PLHMAASEGHANIVEVL 86
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLM 96
+K+ T LH+AAS G + V+ LL + V D TAL A + ++V+L+
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELL 119
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 217 KLSLSHAVLEQAITLVEIIWKEVIRSQDSEISTLIE-RPFQLT---FVAAEKGNI 267
K++LSH + A VE+I E++R +D +S E PF LT V A K N+
Sbjct: 29 KMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNV 83
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTED 99
S+ G + LHVAA GR D + LL + + L LA G+ +V+ + +
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 100 NEHLALDRESVDQYLPIHAGAMSGHKEVVLYL 131
N +++ + P+ GH E+V L
Sbjct: 142 NA--KPNKKDLSGNTPLIYACSGGHHELVALL 171
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTALSLAAASGNLDLVQLMTE 98
++ G TALH+A G +D K L +V L + GQ + LA + DLV + E
Sbjct: 50 NRFGCTALHLACKFGCVDTAKYLASVG-EVHSL--WHGQKPIHLAVXANKTDLVVALVE 105
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 43 GETALHVAASAGRIDFVKNLLG-------------YSPQVLKLTDYFGQTALSLAAASGN 89
G+TALH+A +V+ L+ + P+ YFG+ LSLAA +
Sbjct: 91 GQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 150
Query: 90 LDLVQLMTEDNEHLALDRESVD 111
+V +TE N H D D
Sbjct: 151 PHIVNYLTE-NPHKKADMRRQD 171
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 40 SKLGETALHVAASAGRIDFVKNLLGYSPQVLKLTDYFGQTAL--SLAAASGN---LDLVQ 94
++ G AL AA G ID VK LL + + + FG TAL ++ GN D+V+
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162
Query: 95 LMTED 99
L+ E+
Sbjct: 163 LLMEN 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,294,168
Number of Sequences: 62578
Number of extensions: 525813
Number of successful extensions: 1790
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1419
Number of HSP's gapped (non-prelim): 297
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)