Query 046390
Match_columns 100
No_of_seqs 115 out of 649
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 20:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 57.7 2.6 8.8E-05 23.4 0.3 20 54-73 1-20 (37)
2 1y74_B MLIN-2/CASK, peripheral 57.5 4.3 0.00015 23.1 1.3 20 54-73 26-49 (50)
3 2al3_A TUG long isoform; TUG U 52.7 22 0.00077 23.1 4.3 41 38-81 12-52 (90)
4 2vpk_A Myoneurin; transcriptio 46.4 27 0.00093 21.6 3.9 50 37-97 25-79 (116)
5 2nz0_B Potassium voltage-gated 44.2 33 0.0011 23.4 4.4 61 33-98 33-94 (140)
6 1r29_A B-cell lymphoma 6 prote 41.6 28 0.00094 22.0 3.4 53 37-97 32-88 (127)
7 1s1g_A Potassium voltage-gated 39.8 23 0.00079 23.7 2.9 61 33-98 11-72 (124)
8 3ga1_A Nucleus accumbens-assoc 38.4 54 0.0018 20.7 4.5 50 37-97 36-89 (129)
9 2if5_A Zinc finger and BTB dom 37.2 60 0.0021 20.0 4.5 54 37-97 28-84 (120)
10 1pzq_A Erythronolide synthase; 37.1 13 0.00045 22.3 1.2 15 10-24 36-50 (60)
11 2xko_C PIPX, global nitrogen r 36.5 4.5 0.00015 26.7 -1.0 11 54-64 5-15 (89)
12 1z3x_A Putative cytidyltransfe 36.3 1.6 5.4E-05 33.3 -3.7 30 29-61 207-236 (238)
13 1y6i_A Mg-chelatase cofactor G 35.4 2.1 7.2E-05 32.5 -3.2 31 29-62 199-229 (233)
14 1yu8_X Villin; alpha helix, 3- 33.7 10 0.00035 23.5 0.3 20 54-73 31-50 (67)
15 2vkp_A BTB/POZ domain-containi 33.7 66 0.0023 19.3 4.2 56 37-97 11-70 (109)
16 1ujs_A Actin-binding LIM prote 32.2 14 0.00048 24.1 0.8 20 54-73 46-65 (88)
17 1nn7_A Potassium channel KV4.2 30.7 14 0.00049 23.8 0.7 57 37-98 2-59 (105)
18 1qzp_A Dematin; villin headpie 30.1 9 0.00031 23.7 -0.4 21 53-73 31-51 (68)
19 1vd2_A Protein kinase C, IOTA 29.0 1.1E+02 0.0039 19.4 4.8 30 42-76 14-43 (89)
20 2k6m_S Supervillin; SVHP, HP, 28.3 11 0.00038 23.3 -0.2 21 53-73 30-50 (67)
21 3drz_A BTB/POZ domain-containi 27.8 1.2E+02 0.004 19.2 6.2 60 34-98 5-69 (107)
22 3b84_A Zinc finger and BTB dom 26.7 90 0.0031 19.4 4.0 49 38-97 28-79 (119)
23 2lkt_A Retinoic acid receptor 26.3 47 0.0016 21.5 2.7 9 36-44 23-31 (125)
24 1zav_U 50S ribosomal protein L 25.9 43 0.0015 17.5 1.9 13 61-73 18-30 (30)
25 3p2o_A Bifunctional protein fo 24.4 1.3E+02 0.0046 22.9 5.3 54 33-99 33-88 (285)
26 3n5b_B ASR0485 protein; PII, P 24.2 9.6 0.00033 26.0 -1.1 10 55-64 29-38 (112)
27 3h43_A Proteasome-activating n 24.0 85 0.0029 19.6 3.5 46 8-55 4-49 (85)
28 3qli_A Coenzyme A transferase; 23.9 43 0.0015 27.3 2.5 44 30-74 402-454 (455)
29 2q81_A MIZ-1 protein; BTB/POZ 23.8 1E+02 0.0035 19.1 3.9 48 38-97 31-81 (119)
30 3ohu_A Transcription regulator 22.6 67 0.0023 20.0 2.8 52 37-97 35-90 (125)
31 3htm_A Speckle-type POZ protei 21.9 1.1E+02 0.0037 19.8 3.8 54 37-97 37-93 (172)
32 3ezo_A Malonyl COA-acyl carrie 21.9 55 0.0019 24.5 2.6 40 35-75 10-49 (318)
33 1wy3_A Villin; structural prot 21.3 23 0.00077 19.3 0.2 17 56-72 1-17 (35)
34 3pmi_A PWWP domain-containing 20.2 37 0.0013 23.8 1.2 27 47-73 49-78 (134)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=57.67 E-value=2.6 Score=23.44 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=17.4
Q ss_pred cccCChhHHHHHHHHHHhhC
Q 046390 54 SYLNQSPFQDLLSQAEEEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 2
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=57.49 E-value=4.3 Score=23.08 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=15.9
Q ss_pred cccCChhHHHHHHH----HHHhhC
Q 046390 54 SYLNQSPFQDLLSQ----AEEEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~----aeEEfG 73 (100)
..|+.|.|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 57889999999964 677775
No 3
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=52.69 E-value=22 Score=23.12 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=29.6
Q ss_pred EEEecCCcceEEEEEecccCChhHHHHHHHHHHhhCcccCCCce
Q 046390 38 AVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGL 81 (100)
Q Consensus 38 aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L 81 (100)
.+++.... +|+.|.+ -..-.+.++|++|=+.||++.+...|
T Consensus 12 v~Vl~~n~-rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 12 VSVLAPNG-RRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp EEEECTTS-CEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred EEEEcCCC-cEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeE
Confidence 33444444 8899988 34456889999999999998764444
No 4
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=46.36 E-value=27 Score=21.63 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=36.6
Q ss_pred EEEEecCCcceEEEEEeccc--CChhHHHHHHHHHHhhCcccCCCceeee---ccHHHHHHHHHHH
Q 046390 37 LAVYVGENEMKRFMIPVSYL--NQSPFQDLLSQAEEEFGFHHPMGGLTIP---CREDIFIDLISRL 97 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP---C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++... .+ ..+.|+ .+.+.|+.++..+
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~-------~~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST-------SE-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC-------CC-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC-------CC-CeEEeecCCCCHHHHHHHHHHH
Confidence 3455664 5687777776 578999988654 23 678888 7899999998765
No 5
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=44.23 E-value=33 Score=23.42 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=43.8
Q ss_pred CCceEEEEecCCcceEEEEEeccc-CChhHHHHHHHHHHhhCcccCCCceeeeccHHHHHHHHHHHh
Q 046390 33 PKGYLAVYVGENEMKRFMIPVSYL-NQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
....+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|.+-|-.|...|++||..+.
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR 94 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh
Confidence 45788889996 7799987765 3342 233334444445555699999999999999999875
No 6
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=41.57 E-value=28 Score=21.97 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=38.6
Q ss_pred EEEEecCCcceEEEEEeccc--CChhHHHHHHHHHHhhCcccCCCceee-e-ccHHHHHHHHHHH
Q 046390 37 LAVYVGENEMKRFMIPVSYL--NQSPFQDLLSQAEEEFGFHHPMGGLTI-P-CREDIFIDLISRL 97 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~I-P-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..+.| + .+.+.|+.++..+
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 3455664 5687777777 689999999765444 23 68999 4 6889999998765
No 7
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=39.79 E-value=23 Score=23.67 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=42.9
Q ss_pred CCceEEEEecCCcceEEEEEecccC-ChhHHHHHHHHHHhhCcccCCCceeeeccHHHHHHHHHHHh
Q 046390 33 PKGYLAVYVGENEMKRFMIPVSYLN-QSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~-hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
....+.+-||. .||.+..+-|. +|. .+|..++...-++.+.|.+-|-.+...|+.||..+.
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR 72 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 72 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHh
Confidence 45678888996 77999887663 332 233334444345445699999999999999998875
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=38.36 E-value=54 Score=20.72 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=37.0
Q ss_pred EEEEecCCcceEEEEEecccC--ChhHHHHHHHHHHhhCcccCCCceeee--ccHHHHHHHHHHH
Q 046390 37 LAVYVGENEMKRFMIPVSYLN--QSPFQDLLSQAEEEFGFHHPMGGLTIP--CREDIFIDLISRL 97 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..+.|| .+.+.|+.++..+
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 4566764 56777666654 68899988765 23 689997 8899999998865
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=37.18 E-value=60 Score=20.02 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=36.2
Q ss_pred EEEEecCCcceEEEEEeccc--CChhHHHHHHHHHHhhCcccCCCceeee-ccHHHHHHHHHHH
Q 046390 37 LAVYVGENEMKRFMIPVSYL--NQSPFQDLLSQAEEEFGFHHPMGGLTIP-CREDIFIDLISRL 97 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ..+ ..+.++ .+.+.|+.++..+
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVV---DQQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCccc---cCC-ceEEeCCCCHHHHHHHHHHH
Confidence 3455664 6687777777 479999999754333 223 678888 5889999998765
No 10
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=37.06 E-value=13 Score=22.32 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=11.8
Q ss_pred HHHHHHhhccccccc
Q 046390 10 QAKKILRQSSFKASQ 24 (100)
Q Consensus 10 ~~k~~l~r~~~~~~~ 24 (100)
++.++||||++....
T Consensus 36 rlesllrrwnsrrad 50 (60)
T 1pzq_A 36 RLESLLRRWNSRRAD 50 (60)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccC
Confidence 678899999987443
No 11
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=36.50 E-value=4.5 Score=26.68 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=8.3
Q ss_pred cccCChhHHHH
Q 046390 54 SYLNQSPFQDL 64 (100)
Q Consensus 54 ~~L~hP~F~~L 64 (100)
.|||||-|.-|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 49999988543
No 12
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=36.29 E-value=1.6 Score=33.28 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=20.1
Q ss_pred cccCCCceEEEEecCCcceEEEEEecccCChhH
Q 046390 29 ATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPF 61 (100)
Q Consensus 29 ~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F 61 (100)
+..+|+||+|..-.=.. .-+=.+.|+||.|
T Consensus 207 sl~AP~GHLP~~~~lrG---v~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQLRG---VQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCCTTC---SHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCccccc---HHHHHHHHcCccc
Confidence 44689999998542211 2345678899987
No 13
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=35.36 E-value=2.1 Score=32.47 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=21.0
Q ss_pred cccCCCceEEEEecCCcceEEEEEecccCChhHH
Q 046390 29 ATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQ 62 (100)
Q Consensus 29 ~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~ 62 (100)
+..+|+||+|..-.=.. - -+=.+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG-~--~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRG-V--RVAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTC-T--HHHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccch-H--HHHHHHHCCcccc
Confidence 44689999998653221 1 2556789999884
No 14
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=33.70 E-value=10 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=18.5
Q ss_pred cccCChhHHHHHHHHHHhhC
Q 046390 54 SYLNQSPFQDLLSQAEEEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 15
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=33.68 E-value=66 Score=19.34 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.8
Q ss_pred EEEEecCC-cceEEEEEeccc--CChhHHHHHHHHHHhhCcccCCCceeee-ccHHHHHHHHHHH
Q 046390 37 LAVYVGEN-EMKRFMIPVSYL--NQSPFQDLLSQAEEEFGFHHPMGGLTIP-CREDIFIDLISRL 97 (100)
Q Consensus 37 ~aVyVG~~-~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||++ ..++|-+.-..| ..|.|+.++...-.|- . ..+.|| .+.+.|+.++..+
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~----~-~~i~l~~~~~~~f~~~l~~i 70 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV----K-SEIHIPDVEPAAFLILLKYM 70 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------C-CEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC----C-CeEEeCCCCHHHHHHHHHHH
Confidence 34566652 126788888877 6899999997543331 1 468887 5889999998765
No 16
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=32.17 E-value=14 Score=24.06 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.7
Q ss_pred cccCChhHHHHHHHHHHhhC
Q 046390 54 SYLNQSPFQDLLSQAEEEFG 73 (100)
Q Consensus 54 ~~L~hP~F~~LL~~aeEEfG 73 (100)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 17
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=30.70 E-value=14 Score=23.81 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=36.5
Q ss_pred EEEEecCCcceEEEEEeccc-CChhHHHHHHHHHHhhCcccCCCceeeeccHHHHHHHHHHHh
Q 046390 37 LAVYVGENEMKRFMIPVSYL-NQSPFQDLLSQAEEEFGFHHPMGGLTIPCREDIFIDLISRLN 98 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
+.+-||. .||.+..+-| ++|. .+|..++...-++.+.|..-|-.+...|++||..+.
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR 59 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYR 59 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHh
Confidence 4456775 6788877655 3332 122223333334444589999999999999998775
No 18
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=30.06 E-value=9 Score=23.70 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.7
Q ss_pred ecccCChhHHHHHHHHHHhhC
Q 046390 53 VSYLNQSPFQDLLSQAEEEFG 73 (100)
Q Consensus 53 ~~~L~hP~F~~LL~~aeEEfG 73 (100)
-.||+.-.|++++.++.+||-
T Consensus 31 E~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 369999999999999999983
No 19
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=28.99 E-value=1.1e+02 Score=19.40 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=23.7
Q ss_pred cCCcceEEEEEecccCChhHHHHHHHHHHhhCccc
Q 046390 42 GENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHH 76 (100)
Q Consensus 42 G~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 76 (100)
.++- .|+.||. ...|.+|.++-.+-|++..
T Consensus 14 ~gdi-~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 14 RGDI-MITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp SSCE-EEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred CCeE-EEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 3344 7888886 5689999999999999864
No 20
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=28.28 E-value=11 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.0
Q ss_pred ecccCChhHHHHHHHHHHhhC
Q 046390 53 VSYLNQSPFQDLLSQAEEEFG 73 (100)
Q Consensus 53 ~~~L~hP~F~~LL~~aeEEfG 73 (100)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 369999999999999999984
No 21
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=27.81 E-value=1.2e+02 Score=19.15 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=42.1
Q ss_pred CceEEEEecCCcceEEEEEecccC-Ch--hHHHHHHHHHHhhC--cccCCCceeeeccHHHHHHHHHHHh
Q 046390 34 KGYLAVYVGENEMKRFMIPVSYLN-QS--PFQDLLSQAEEEFG--FHHPMGGLTIPCREDIFIDLISRLN 98 (100)
Q Consensus 34 kG~~aVyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~ 98 (100)
...+.+-||. ++|.+..+-|. +| .|..+... ..++. .+. .|.+-|-.+...|++||..+.
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d~-~~~~fiDRdp~~F~~IL~~lr 69 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDE-TGAYLIDRDPTYFGPVLNYLR 69 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBCT-TSCEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCCC-CceEEecCChHHHHHHHHHhC
Confidence 3467788995 77999987775 44 45555432 22333 233 489999999999999998775
No 22
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=26.70 E-value=90 Score=19.36 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=34.9
Q ss_pred EEEecCCcceEEEEEeccc--CChhHHHHHHHHHHhhCcccCCCceeee-ccHHHHHHHHHHH
Q 046390 38 AVYVGENEMKRFMIPVSYL--NQSPFQDLLSQAEEEFGFHHPMGGLTIP-CREDIFIDLISRL 97 (100)
Q Consensus 38 aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
.+.||+ ++|-+.-..| ..|.|++++... . + +.+.|| .+.+.|+.++..+
T Consensus 28 ~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~-----~--~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 28 TLDVGG---LVFKAHWSVLACCSHFFQSLYGDG-----S--G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEETT---EEEEECHHHHHHHCHHHHHHHTTT-----T--C-CCEEECGGGHHHHHHHHHHH
T ss_pred EEEECC---EEEEeeHHHHhhcCHHHHHHHCCC-----C--C-CeEEeCCCCHHHHHHHHHHH
Confidence 455664 5677776666 478999988652 2 3 679998 5688999988765
No 23
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=26.34 E-value=47 Score=21.50 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=8.3
Q ss_pred eEEEEecCC
Q 046390 36 YLAVYVGEN 44 (100)
Q Consensus 36 ~~aVyVG~~ 44 (100)
|.+||||+.
T Consensus 23 H~gIYvGdg 31 (125)
T 2lkt_A 23 HWALYIGDG 31 (125)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeCCC
Confidence 899999987
No 24
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=25.90 E-value=43 Score=17.48 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhC
Q 046390 61 FQDLLSQAEEEFG 73 (100)
Q Consensus 61 F~~LL~~aeEEfG 73 (100)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 25
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=24.44 E-value=1.3e+02 Score=22.87 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=39.8
Q ss_pred CCceEEEEecCCcceEEEEEecccCChhHHHHHHHHHHhhCcccCCCceeee--ccHHHHHHHHHHHhc
Q 046390 33 PKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMGGLTIP--CREDIFIDLISRLNE 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 99 (100)
+.|...|.||++. . .-....--.++.+|.|++.. .+.+| ++.+++...+..||+
T Consensus 33 ~P~Lavilvg~dp-------a----S~~Yv~~k~k~~~~~Gi~~~--~~~lp~~~s~~ell~~I~~lN~ 88 (285)
T 3p2o_A 33 ESCLAVILVGDNP-------A----SQTYVKSKAKACEECGIKSL--VYHLNENITQNELLALINTLNH 88 (285)
T ss_dssp CCEEEEEEESCCH-------H----HHHHHHHHHHHHHHHTCEEE--EEEECTTCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCH-------H----HHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 5688899999862 0 12334566788999999874 68888 778888888888763
No 26
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=24.19 E-value=9.6 Score=26.03 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=8.1
Q ss_pred ccCChhHHHH
Q 046390 55 YLNQSPFQDL 64 (100)
Q Consensus 55 ~L~hP~F~~L 64 (100)
|||||-|.-|
T Consensus 29 YLNHPTFGLL 38 (112)
T 3n5b_B 29 YINHPTWGLL 38 (112)
T ss_dssp EEEETTTEEE
T ss_pred hccCCccchh
Confidence 9999998544
No 27
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=23.95 E-value=85 Score=19.60 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=28.5
Q ss_pred hHHHHHHHhhccccccccccccccCCCceEEEEecCCcceEEEEEecc
Q 046390 8 IVQAKKILRQSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSY 55 (100)
Q Consensus 8 ~~~~k~~l~r~~~~~~~~~~~~~~vpkG~~aVyVG~~~~~RfvVp~~~ 55 (100)
+.++|.-+++..+..-.-.+--..+..+++-|..+.+ .+|+|+++=
T Consensus 4 v~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g--~~~~V~v~~ 49 (85)
T 3h43_A 4 NEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTG--PSFLVNVSH 49 (85)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTS--SEEEEEBCT
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCC--CeEEEEecC
Confidence 5567777766665433222333345678888887654 789998753
No 28
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=23.88 E-value=43 Score=27.26 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=29.7
Q ss_pred ccCCCceEEEEecCC---------cceEEEEEecccCChhHHHHHHHHHHhhCc
Q 046390 30 TEVPKGYLAVYVGEN---------EMKRFMIPVSYLNQSPFQDLLSQAEEEFGF 74 (100)
Q Consensus 30 ~~vpkG~~aVyVG~~---------~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~ 74 (100)
-..|++++-+.|-|- -.+|-.-=++ +-||.||+.|.+++++.|+
T Consensus 402 vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp CSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 345777777777542 1244433344 8899999999988888764
No 29
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=23.76 E-value=1e+02 Score=19.11 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=34.6
Q ss_pred EEEecCCcceEEEEEeccc--CChhHHHHHHHHHHhhCcccCCCceeeec-cHHHHHHHHHHH
Q 046390 38 AVYVGENEMKRFMIPVSYL--NQSPFQDLLSQAEEEFGFHHPMGGLTIPC-REDIFIDLISRL 97 (100)
Q Consensus 38 aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IPC-~~~~Fe~vl~~l 97 (100)
.+.||+ ++|-+.-..| ..|.|++++.. ++ ..+.++- +.+.|+.++..+
T Consensus 31 ~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 31 TFVVDG---VHFKAHKAVLAACSEYFKMLFVD--------QK-DVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEETT---EEEEECHHHHHHHCHHHHHHHHH--------CC-SGGGGGGCCHHHHHHHHHHH
T ss_pred EEEECC---EEEehhHHHHHHcCHHHHHHHcC--------CC-CEEEeCCCCHHHHHHHHHHH
Confidence 455664 5688877777 48999999974 22 5677775 688899988764
No 30
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=22.60 E-value=67 Score=20.03 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=36.3
Q ss_pred EEEEecCCcceEEEEEecccC--ChhHHHHHHHHHHhhCcccCCCceeee--ccHHHHHHHHHHH
Q 046390 37 LAVYVGENEMKRFMIPVSYLN--QSPFQDLLSQAEEEFGFHHPMGGLTIP--CREDIFIDLISRL 97 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..|. .|.|++++.....| + ..+.+| .+.+.|+.++..+
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHhH
Confidence 4556764 55777666664 68899998654322 2 578887 7999999998765
No 31
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=21.91 E-value=1.1e+02 Score=19.75 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=38.0
Q ss_pred EEEEecCCcceEEEEEeccc--CChhHHHHHHHHHHhhCcccCCCceeee-ccHHHHHHHHHHH
Q 046390 37 LAVYVGENEMKRFMIPVSYL--NQSPFQDLLSQAEEEFGFHHPMGGLTIP-CREDIFIDLISRL 97 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 97 (100)
+.+.||+ ++|-+.-..| ..|.|+.++...-.| ..+ ..+.|| .+.+.|+.++..+
T Consensus 37 v~l~v~~---~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~~l~~~ 93 (172)
T 3htm_A 37 CCLCVAG---QEFQAHKAILAARSPVFSAMFEHEMEE---SKK-NRVEINDVEPEVFKEMMCFI 93 (172)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHSCCCG---GGT-TEEEECSSCHHHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHHHcCHHHHHHHccCccc---cCC-CeEEecCCCHHHHHHHHHHH
Confidence 4566764 5688887777 479999999843222 122 678887 5889999998765
No 32
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=21.87 E-value=55 Score=24.46 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=26.2
Q ss_pred ceEEEEecCCcceEEEEEecccCChhHHHHHHHHHHhhCcc
Q 046390 35 GYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFH 75 (100)
Q Consensus 35 G~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 75 (100)
-..-|+-|.+. +..=.-.+.+++|.|++.++++.+.+|++
T Consensus 10 ~~~f~F~GQGs-Q~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQGS-QSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTTC-CCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcch-hhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 35556667542 11111223338999999999999999875
No 33
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=21.33 E-value=23 Score=19.28 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=13.4
Q ss_pred cCChhHHHHHHHHHHhh
Q 046390 56 LNQSPFQDLLSQAEEEF 72 (100)
Q Consensus 56 L~hP~F~~LL~~aeEEf 72 (100)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 45667888888888887
No 34
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=20.18 E-value=37 Score=23.79 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=23.6
Q ss_pred eEEEEEecccCC---hhHHHHHHHHHHhhC
Q 046390 47 KRFMIPVSYLNQ---SPFQDLLSQAEEEFG 73 (100)
Q Consensus 47 ~RfvVp~~~L~h---P~F~~LL~~aeEEfG 73 (100)
+=|.||+.-|+| -.-++|+++|.|.||
T Consensus 49 rGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 49 KGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp CCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred CceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 679999988877 458999999999998
Done!