BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046391
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YCF|A Chain A, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
 pdb|1YCF|B Chain B, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
 pdb|1YCF|C Chain C, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
 pdb|1YCF|D Chain D, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
 pdb|1YCG|A Chain A, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
           Diiron Site Structure And Mechanistic Insights Into A
           Scavenging Nitric Oxide Reductase
 pdb|1YCG|B Chain B, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
           Diiron Site Structure And Mechanistic Insights Into A
           Scavenging Nitric Oxide Reductase
 pdb|1YCG|C Chain C, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
           Diiron Site Structure And Mechanistic Insights Into A
           Scavenging Nitric Oxide Reductase
 pdb|1YCG|D Chain D, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
           Diiron Site Structure And Mechanistic Insights Into A
           Scavenging Nitric Oxide Reductase
 pdb|1YCH|A Chain A, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
           Novel Diiron Site Structure And Mechanistic Insights
           Into A Scavenging Nitric Oxide Reductase
 pdb|1YCH|B Chain B, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
           Novel Diiron Site Structure And Mechanistic Insights
           Into A Scavenging Nitric Oxide Reductase
 pdb|1YCH|C Chain C, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
           Novel Diiron Site Structure And Mechanistic Insights
           Into A Scavenging Nitric Oxide Reductase
 pdb|1YCH|D Chain D, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
           Novel Diiron Site Structure And Mechanistic Insights
           Into A Scavenging Nitric Oxide Reductase
          Length = 398

 Score = 29.6 bits (65), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 44  DSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGV 103
           DS      H+ F Y   ++G  V L    LT I++P     +W  +M T + +    E +
Sbjct: 109 DSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPM---LHWPDSMFTYVPE----EAL 161

Query: 104 MIAHS--GQSSVIITRFGDNLKAGL 126
           ++ +   GQ      RF D + AGL
Sbjct: 162 LLPNDAFGQHIATSVRFDDQVDAGL 186


>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
           Like Protein 4
 pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
           Like Protein 4
          Length = 148

 Score = 26.6 bits (57), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 150 DCFIPPKEVQKDSYPVDENLDWRSPLH 176
           + F+   E+Q DS+ +D+ LD   PLH
Sbjct: 107 NTFLGEAEIQMDSWKLDKKLDHCLPLH 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,961,090
Number of Sequences: 62578
Number of extensions: 180556
Number of successful extensions: 417
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 6
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)