BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046391
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2GEY3|ADDB_LACF3 ATP-dependent helicase/deoxyribonuclease subunit B OS=Lactobacillus
fermentum (strain NBRC 3956 / LMG 18251) GN=rexB PE=3
SV=1
Length = 1245
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 50 IKHVIF--GYFSQRSGLLVYLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAH 107
++H ++ + +Q SG L L D + W+T T +++Y I G +A
Sbjct: 546 VRHQLYSWAHQAQESGQLTQLRD-----------VQQIWQT-FGTLLDEYVTILGDQVAP 593
Query: 108 SGQSSVIITRFGDNLKAGLSITRMEEI-WTIDDLAFNVAGLSLD 150
+ Q ++ F D + AG + R +I T+D + + +G+ D
Sbjct: 594 TEQPGQLVAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQD 637
>sp|C0LGT5|Y5169_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1
Length = 866
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 50 IKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSG 109
+KH+ Y+ Q L+ Y +D Y R+ SP LP + + T + + + E A +
Sbjct: 186 LKHLFRRYYRQSDRLIRYPDDVY-DRVWSPFFLPEWTQITTSLDVNNSNNYEPPKAALTS 244
Query: 110 QSSVIITRFGDNLKAGLSITRMEEIWTIDD 139
++ GDN TR+ IWT+D+
Sbjct: 245 AATP-----GDN------GTRLTIIWTLDN 263
>sp|Q10DK7|1A11_ORYSJ 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp.
japonica GN=ACC1 PE=2 SV=1
Length = 487
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 36/81 (44%)
Query: 10 VFSTAQYMGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLE 69
V S QY+ + D D +A N+ + +R D + ++ + G +GL +++
Sbjct: 318 VSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGLFCWVD 377
Query: 70 DSYLTRIQSPGSLPTYWETTM 90
S+L R +S W+ +
Sbjct: 378 MSHLMRSRSFAGEMELWKKVV 398
>sp|A2XLL2|1A11_ORYSI 1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp.
indica GN=ACC1 PE=2 SV=2
Length = 487
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 36/81 (44%)
Query: 10 VFSTAQYMGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLE 69
V S QY+ + D D +A N+ + +R D + ++ + G +GL +++
Sbjct: 318 VSSQTQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGLFCWVD 377
Query: 70 DSYLTRIQSPGSLPTYWETTM 90
S+L R +S W+ +
Sbjct: 378 MSHLMRSRSFAGEMELWKKVV 398
>sp|Q2RJW1|MTAD_MOOTA 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Moorella
thermoacetica (strain ATCC 39073) GN=mtaD PE=3 SV=1
Length = 428
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 65 LVYLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKA 124
++ + D L + G LP W+ D A+ G++ AH+ + ++ + D+L
Sbjct: 23 VIAINDDRLHYVGPAGGLPAGWQADTVIDAGDMVALPGLVNAHTHAAMTLLRSYADDLP- 81
Query: 125 GLSITRMEEIWTIDD 139
L E+IW +D
Sbjct: 82 -LKQWLEEKIWPRED 95
>sp|A4TB64|PSB_MYCGI Proteasome subunit beta OS=Mycobacterium gilvum (strain PYR-GCK)
GN=prcB PE=3 SV=1
Length = 303
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 30 LKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSY-LTRIQSPGSLPTYWET 88
LK DR + MI + R VY+ D Y +T I ++ +
Sbjct: 70 LKFPGGVVMAGDRRATQGHMI--------ASRDVQKVYITDDYTVTGIAGTAAIAVEFAR 121
Query: 89 TMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGL 126
A ++E Y +EGV + G+ + + T NL A L
Sbjct: 122 LYAVELEHYEKLEGVALTFPGKVNRLATMVRGNLGAAL 159
>sp|Q1B797|PSB_MYCSS Proteasome subunit beta OS=Mycobacterium sp. (strain MCS) GN=prcB
PE=3 SV=1
Length = 304
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 66 VYLEDSYL-TRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKA 124
VY+ D Y T I ++ + A ++E Y +EGV + +G+ + + T NL A
Sbjct: 99 VYITDDYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVALTFAGKVNRLATMVRGNLGA 158
Query: 125 GL 126
L
Sbjct: 159 AL 160
>sp|A1UHS7|PSB_MYCSK Proteasome subunit beta OS=Mycobacterium sp. (strain KMS) GN=prcB
PE=3 SV=1
Length = 304
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 66 VYLEDSYL-TRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKA 124
VY+ D Y T I ++ + A ++E Y +EGV + +G+ + + T NL A
Sbjct: 99 VYITDDYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVALTFAGKVNRLATMVRGNLGA 158
Query: 125 GL 126
L
Sbjct: 159 AL 160
>sp|A3Q193|PSB_MYCSJ Proteasome subunit beta OS=Mycobacterium sp. (strain JLS) GN=prcB
PE=3 SV=1
Length = 304
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 66 VYLEDSYL-TRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKA 124
VY+ D Y T I ++ + A ++E Y +EGV + +G+ + + T NL A
Sbjct: 99 VYITDDYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVALTFAGKVNRLATMVRGNLGA 158
Query: 125 GL 126
L
Sbjct: 159 AL 160
>sp|A1TAP4|PSB_MYCVP Proteasome subunit beta OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=prcB PE=3 SV=1
Length = 306
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 29 VLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSY-LTRIQSPGSLPTYWE 87
LK DR + MI + R VY+ D Y +T I ++ +
Sbjct: 72 ALKCPGGVVMAGDRRATQGNMI--------ASRDVQKVYITDDYTVTGIAGTAAIAVEFA 123
Query: 88 TTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGL 126
A ++E Y +EGV + G+ + + T NL A L
Sbjct: 124 RLYAVELEHYEKLEGVALTFPGKVNRLATMVRGNLGAAL 162
>sp|Q9FDN7|FPRA_MOOTA Nitric oxide reductase OS=Moorella thermoacetica (strain ATCC
39073) GN=fprA PE=1 SV=1
Length = 399
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 44 DSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGV 103
DS H+ F Y ++G V L LT I++P +W +M T + + E +
Sbjct: 110 DSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPM---LHWPDSMFTYVPE----EAL 162
Query: 104 MIAHS--GQSSVIITRFGDNLKAGL 126
++ + GQ RF D + AGL
Sbjct: 163 LLPNDAFGQHIATSVRFDDQVDAGL 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,969,999
Number of Sequences: 539616
Number of extensions: 2260606
Number of successful extensions: 4217
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4214
Number of HSP's gapped (non-prelim): 15
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)