Query 046391
Match_columns 176
No_of_seqs 72 out of 74
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 11:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04788 DUF620: Protein of un 100.0 6E-95 1.3E-99 617.3 13.8 154 1-155 90-245 (245)
2 COG5017 Uncharacterized conser 52.3 4.2 9.2E-05 34.1 -0.3 31 86-120 55-86 (161)
3 PF14371 DUF4412: Domain of un 38.1 56 0.0012 22.6 3.7 17 17-33 4-20 (89)
4 cd06911 VirB9_CagX_TrbG VirB9/ 37.1 1.2E+02 0.0027 21.6 5.4 53 67-120 21-77 (86)
5 PRK09455 rseB anti-sigma E fac 36.1 67 0.0015 28.7 4.7 45 14-70 129-173 (319)
6 PF04089 BRICHOS: BRICHOS doma 27.6 52 0.0011 23.3 2.1 21 15-35 16-36 (97)
7 PF03043 Herpes_UL87: Herpesvi 27.0 37 0.00079 33.3 1.6 51 67-123 336-387 (538)
8 PTZ00121 MAEBL; Provisional 26.4 24 0.00053 38.9 0.3 50 15-64 282-342 (2084)
9 PHA03374 hypothetical protein; 25.8 39 0.00084 34.2 1.6 50 67-122 518-568 (730)
10 PHA03375 hypothetical protein; 19.9 59 0.0013 33.4 1.5 50 67-122 607-657 (844)
No 1
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=100.00 E-value=6e-95 Score=617.30 Aligned_cols=154 Identities=62% Similarity=1.034 Sum_probs=151.1
Q ss_pred CCChhhhhhhhhcceeeeeceeCCcceeEEEeccCchhhhcccCCCceEEEeeeecccccccceeEEEeeeeeeeeeC--
Q 046391 1 GLDPIAVASVFSTAQYMGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQS-- 78 (176)
Q Consensus 1 GLDPr~tA~lF~~a~ciGEk~i~geDCFiLkl~a~~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDs~Ltriq~-- 78 (176)
|||||+|||||++|+|||||+|||||||||||+|||++|++||++++|||||++|||||||||||||||||||+|||+
T Consensus 90 GLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS~L~ri~~~~ 169 (245)
T PF04788_consen 90 GLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDSHLTRIQSGR 169 (245)
T ss_pred hcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecceeEEeeecC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEeecccccccccccccceeeecCCcceEEEEEecCcccCCcceeeeeeeeeeeeeeeeccCCCcccccCC
Q 046391 79 PGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEEIWTIDDLAFNVAGLSLDCFIPP 155 (176)
Q Consensus 79 ~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~RfGe~~~~~~~~trmEE~WtIeev~FNV~GLS~DcFiPP 155 (176)
+++++|||||||+|.|+|||+||||||||+|||+||||||||+ .++|++|||||+|+|||||||||||||||||||
T Consensus 170 ~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~-~~~h~rTrmEE~W~Ieev~FNV~GLS~DcFiPP 245 (245)
T PF04788_consen 170 PGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGEN-SMSHSRTRMEETWTIEEVDFNVPGLSMDCFIPP 245 (245)
T ss_pred CCCCceEEEEeecccccccccccceeeeccCCceEEEEecccc-cccCceeeEeeeeEeeeEEeccCCcchhcccCC
Confidence 7899999999999999999999999999999999999999997 466699999999999999999999999999999
No 2
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=52.29 E-value=4.2 Score=34.13 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=23.2
Q ss_pred EeecccccccccccccceeeecCCcc-eEEEEEecC
Q 046391 86 WETTMATKIEDYRAIEGVMIAHSGQS-SVIITRFGD 120 (176)
Q Consensus 86 WETt~eS~i~DYR~VdGi~IAH~G~t-~vtl~RfGe 120 (176)
-++.|.|.|.||| |.|+|+|-- ...++|-+.
T Consensus 55 ~~~kiQsli~dar----IVISHaG~GSIL~~~rl~k 86 (161)
T COG5017 55 KEEKIQSLIHDAR----IVISHAGEGSILLLLRLDK 86 (161)
T ss_pred hHHHHHHHhhcce----EEEeccCcchHHHHhhcCC
Confidence 5789999999999 899999863 344444443
No 3
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=38.13 E-value=56 Score=22.64 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.3
Q ss_pred eeeceeCCcceeEEEec
Q 046391 17 MGEKRISDIDCFVLKLA 33 (176)
Q Consensus 17 iGEk~i~geDCFiLkl~ 33 (176)
.|.|.|+|-+|=..++.
T Consensus 4 tGt~tI~G~~c~ky~v~ 20 (89)
T PF14371_consen 4 TGTKTIAGYKCEKYEVT 20 (89)
T ss_pred CCCEEECCEEeEEEEEE
Confidence 58899999999999986
No 4
>cd06911 VirB9_CagX_TrbG VirB9/CagX/TrbG, a component of the type IV secretion system. VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells
Probab=37.07 E-value=1.2e+02 Score=21.56 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=35.2
Q ss_pred EEeeeeeeeeeCCC---CCCeEEeecc-cccccccccccceeeecCCcceEEEEEecC
Q 046391 67 YLEDSYLTRIQSPG---SLPTYWETTM-ATKIEDYRAIEGVMIAHSGQSSVIITRFGD 120 (176)
Q Consensus 67 ~lEDs~Ltriq~~~---~~~vyWETt~-eS~i~DYR~VdGi~IAH~G~t~vtl~RfGe 120 (176)
-+.|-..|-||-+. -.++|....= ...+-.||-..+..|.|+=.... +.|.|+
T Consensus 21 v~DDG~~Tyi~f~~~~~~Pavf~~~~~g~~~lvn~~~~~~~~vV~~v~~~~-~Lr~G~ 77 (86)
T cd06911 21 VFDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRVEGNYIVVDGVAPKL-VLRLGD 77 (86)
T ss_pred EEECCEEEEEECCCCCCCCcEEEECCCCCEEeceeEEECCEEEEeccCCcE-EEEeCC
Confidence 35677777777763 3489998874 44566699998999998743322 335554
No 5
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=36.15 E-value=67 Score=28.73 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=30.3
Q ss_pred ceeeeeceeCCcceeEEEeccCchhhhcccCCCceEEEeeeecccccccceeEEEee
Q 046391 14 AQYMGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLED 70 (176)
Q Consensus 14 a~ciGEk~i~geDCFiLkl~a~~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lED 70 (176)
-...|+.+|.|-+|.+|++..--. .+.-. .+ +-.+.|||+++.+-
T Consensus 129 ~~~~g~~rVaGr~~~vi~~~PkD~-------~rY~~---~l--wiD~et~llLk~~~ 173 (319)
T PRK09455 129 FISVGRTRIADRLCQVIRIVPKDG-------TRYSY---IV--WIDEESKLPLRVDL 173 (319)
T ss_pred EEEccccEECCeeEEEEEEEECCC-------CCcce---EE--EEEcCCCCEEeEEE
Confidence 367899999999999999876332 11111 11 23678888887653
No 6
>PF04089 BRICHOS: BRICHOS domain; InterPro: IPR007084 The BRICHOS family is defined by a 100 amino acid region found in a variety of proteins implicated in dementia, respiratory distress and cancer, including BRI-2, Chondromodulin-I (ChM-I), CA11, and surfactant protein C []. In several cases, the BRICHOS region is located in the propeptide region that is removed after proteolytic processing. This domain could be involved in the complex post-translational processing of these proteins.; PDB: 2YAD_F.
Probab=27.58 E-value=52 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=16.2
Q ss_pred eeeeeceeCCcceeEEEeccC
Q 046391 15 QYMGEKRISDIDCFVLKLAAN 35 (176)
Q Consensus 15 ~ciGEk~i~geDCFiLkl~a~ 35 (176)
..+|-|..++.-|||.+++..
T Consensus 16 gl~a~~~~~~~~Cfi~~m~~~ 36 (97)
T PF04089_consen 16 GLTAYRDLSGRRCFIMPMDRS 36 (97)
T ss_dssp TEEEEESSTTS-EEEEE--TT
T ss_pred CeEEEEECCCCeEEEEecChh
Confidence 578899999999999999876
No 7
>PF03043 Herpes_UL87: Herpesvirus UL87 family; InterPro: IPR004285 Members of this family are functionally uncharacterised.
Probab=26.95 E-value=37 Score=33.33 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=39.0
Q ss_pred EEeeeeeeeeeCCCCCCeEEeecccccccccccccceeeecCCcceEEEEE-ecCccc
Q 046391 67 YLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITR-FGDNLK 123 (176)
Q Consensus 67 ~lEDs~Ltriq~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~~ 123 (176)
-|||-+++| .|-..|||-|.--|+|. .-||+||.==--.++++.| +|..+.
T Consensus 336 GLENQ~vVR---s~R~~VfWTTNFPs~VS---~~~g~Nv~WFKAaTa~i~kv~G~~L~ 387 (538)
T PF03043_consen 336 GLENQSVVR---SGRSDVFWTTNFPSMVS---TKDGVNVSWFKAATATISKVSGRDLE 387 (538)
T ss_pred cccchhhhh---ccCCceEEecCCCeEEE---cCCCceeeeeeeccEeecccccHHHH
Confidence 379999988 77779999999988887 4679999766666677776 455543
No 8
>PTZ00121 MAEBL; Provisional
Probab=26.39 E-value=24 Score=38.91 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=31.3
Q ss_pred eeeeece-eCCcceeEEEeccCchhhhc-----cc-----CCCceEEEeeeecccccccce
Q 046391 15 QYMGEKR-ISDIDCFVLKLAANQTDLAD-----RS-----DSTAEMIKHVIFGYFSQRSGL 64 (176)
Q Consensus 15 ~ciGEk~-i~geDCFiLkl~a~~~~l~a-----rs-----~~~~EiirH~~~GYFSQrtGL 64 (176)
.|.-.+. .|..-||+..=-+....-.- |- =+|-.=+.+++||||+++||=
T Consensus 282 nC~s~~~d~n~~rCf~p~Kke~gk~wtY~sSf~RPDyEtKCPPR~PLn~~~fGy~n~~tGk 342 (2084)
T PTZ00121 282 NCLSGNSDQGFERCFLPMKKEAGKEWTYASSFIRPDYETKCPPRFPLNDTMFGYFNHRTGE 342 (2084)
T ss_pred hhhhcccccCCcceeeeecccccCCceeeecccCCcccccCCCCCccCCcceeeecCCCCc
Confidence 3433434 47788998654443332211 11 245667899999999999995
No 9
>PHA03374 hypothetical protein; Provisional
Probab=25.81 E-value=39 Score=34.25 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=38.4
Q ss_pred EEeeeeeeeeeCCCCCCeEEeecccccccccccccceeeecCCcceEEEEE-ecCcc
Q 046391 67 YLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITR-FGDNL 122 (176)
Q Consensus 67 ~lEDs~Ltriq~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~ 122 (176)
-|||-+++| .+-+.|||-|..-|+|. .-||+||+==--.++++.| +|..+
T Consensus 518 GLEnQ~vVR---~~R~~VfWTTNFPs~vS---~~~g~NVsWFKAATAtIskv~G~~L 568 (730)
T PHA03374 518 GLENQSLVR---TGRRDVFWTTNFPSVVS---TKDGLNVSWFKAATATISKIHGRTL 568 (730)
T ss_pred cccchhhhh---ccCCceEEecCCCeEEE---cCCCcceeeeeecceeecccccHHH
Confidence 379988988 77789999999998887 4679999766666677776 35443
No 10
>PHA03375 hypothetical protein; Provisional
Probab=19.88 E-value=59 Score=33.43 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=37.6
Q ss_pred EEeeeeeeeeeCCCCCCeEEeecccccccccccccceeeecCCcceEEEEE-ecCcc
Q 046391 67 YLEDSYLTRIQSPGSLPTYWETTMATKIEDYRAIEGVMIAHSGQSSVIITR-FGDNL 122 (176)
Q Consensus 67 ~lEDs~Ltriq~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~ 122 (176)
-|||-+++| .+-..|||-|..-|+|. .-+|+|+.==--.++++.| +|..+
T Consensus 607 GLEnQ~vVR---s~R~~VfWTTNFPs~IS---~~~g~NVsWFKAATAtIskV~G~~L 657 (844)
T PHA03375 607 GLEDQSVVR---SERSKVYWTTNFPCMIS---NTDNVNVGWFKAATAIIPRVSGRDL 657 (844)
T ss_pred cccchhhhh---ccCCceEEecCCCeEEE---cCCCcceeeeeeccEeccccccHHH
Confidence 379988988 67779999999998887 4678998765555666666 34443
Done!