Query 046391
Match_columns 176
No_of_seqs 72 out of 74
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 20:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3buu_A Uncharacterized LOLA su 92.0 1.1 3.6E-05 34.6 8.9 108 14-156 117-224 (229)
2 3bk5_A Putative outer membrane 91.4 0.88 3E-05 35.4 8.0 106 14-154 126-232 (237)
3 3m4w_A Sigma-E factor regulato 43.1 24 0.00083 29.7 4.2 45 14-70 105-149 (295)
4 4hg1_A Putative cytoplasmic pr 41.7 21 0.00071 30.1 3.5 31 103-133 126-156 (225)
5 1svq_A Severin; actin-binding; 28.8 23 0.00079 25.5 1.6 14 20-33 34-47 (114)
6 1kcq_A Gelsolin, brevin, ADF, 26.7 27 0.00091 24.5 1.5 14 20-33 24-37 (104)
7 2iqc_A Protein FACF, fanconi a 25.0 18 0.0006 30.5 0.4 17 133-149 183-199 (210)
8 3mh9_C Lipoprotein LPRG; mutan 24.7 1.1E+02 0.0038 24.6 5.1 41 2-42 110-154 (218)
9 3gi1_A LBP, laminin-binding pr 21.8 20 0.00069 29.4 0.1 50 46-95 180-243 (286)
10 3cx3_A Lipoprotein; zinc-bindi 21.4 21 0.00072 29.1 0.1 50 45-94 177-240 (284)
11 2prs_A High-affinity zinc upta 21.0 19 0.00067 29.2 -0.1 49 46-94 175-237 (284)
12 1h3z_A Hypothetical 62.8 kDa p 20.4 35 0.0012 24.4 1.2 13 144-156 97-109 (109)
No 1
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=92.02 E-value=1.1 Score=34.59 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=62.9
Q ss_pred ceeeeeceeCCcceeEEEeccCchhhhcccCCCceEEEeeeecccccccceeEEEeeeeeeeeeCCCCCCeEEeeccccc
Q 046391 14 AQYMGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGSLPTYWETTMATK 93 (176)
Q Consensus 14 a~ciGEk~i~geDCFiLkl~a~~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDs~Ltriq~~~~~~vyWETt~eS~ 93 (176)
...+|++.++|.+|.+|++.+-... + . .=+.. =|+.+.|+|+++.+- + ....--|++..
T Consensus 117 ~~l~g~~~v~g~~~~vl~~~pk~~~-~--~-----y~k~~--lwiD~~t~~p~k~~~--~------d~~G~l~k~~~--- 175 (229)
T 3buu_A 117 PQLLRNESIDDEDYYVLELTGIDRS-V--T-----YQKVL--LWVNQSNFRPYKAEF--Y------SVSGRLLKTSR--- 175 (229)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSTT-S--S-----CSEEE--EEEETTTCCEEEEEE--E------CTTSCEEEEEE---
T ss_pred eEEeeeeeeCCeeEEEEEEEecCCC-C--c-----eEEEE--EEEECCCCcEEEEEE--E------cCCCCEEEEEE---
Confidence 3689999999999999998764432 1 0 00111 145677888777643 1 12233566443
Q ss_pred ccccccccceeeecCCcceEEEEEecCcccCCcceeeeeeeeeeeeeeeeccCCCcccccCCc
Q 046391 94 IEDYRAIEGVMIAHSGQSSVIITRFGDNLKAGLSITRMEEIWTIDDLAFNVAGLSLDCFIPPK 156 (176)
Q Consensus 94 i~DYR~VdGi~IAH~G~t~vtl~RfGe~~~~~~~~trmEE~WtIeev~FNV~GLS~DcFiPP~ 156 (176)
..+|..++|+.+++ -...-+....+ .+|.|+ +.++.|| +|+-..|-|+.
T Consensus 176 ~~~~~~~~g~~~~~-------~~~~~d~~~~g-~~t~~~----~~~~~~~--~l~~~~Ft~~~ 224 (229)
T 3buu_A 176 YENFDNILGEMRPT-------RIIMEDALKSG-EVSVLD----YSDMKLR--DLPDKIFTKDY 224 (229)
T ss_dssp EEEEEEETTEEEEE-------EEEEEESSSSC-CEEEEE----EEEEEEC--CCCGGGSSTGG
T ss_pred eeccEEECCEEEeE-------EEEEEeCcCCC-CEEEEE----EeeeEeC--CCChHhCCHHH
Confidence 45677777765543 22222211122 256654 5688898 88888886543
No 2
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.45 E-value=0.88 Score=35.43 Aligned_cols=106 Identities=18% Similarity=0.286 Sum_probs=62.6
Q ss_pred ceeeeeceeCCcceeEEEeccCchhhhcccCCCceEEEeeeecccccccceeEEEeeeeeeeeeCCCCCCeEEeeccccc
Q 046391 14 AQYMGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLEDSYLTRIQSPGSLPTYWETTMATK 93 (176)
Q Consensus 14 a~ciGEk~i~geDCFiLkl~a~~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDs~Ltriq~~~~~~vyWETt~eS~ 93 (176)
...+|+++++|.+|.+|++.+-... + ..-+..+ |..+.++++++.+- . . ..| --|++-.
T Consensus 126 ~~l~g~~~~~g~~~~vl~~~pk~~~-------~-~y~k~~~--wiD~~t~~~~k~~~--~---d-~~G--~l~~~~~--- 184 (237)
T 3bk5_A 126 FNHLKDEKFNGQDVFVLEQIPTDKN-------S-GYTKQVV--WLDKAHYRPLKVEF--Y---D-RKG--ALLKTLT--- 184 (237)
T ss_dssp EEEEEEEEETTEEEEEEEEEESCTT-------S-SEEEEEE--EEETTTCCEEEEEE--E---E-TTS--CEEEEEE---
T ss_pred eEEeeeeEECCeeEEEEEEEECCCC-------C-CceEEEE--EEECCCCeEEEEEE--E---c-CCC--CEEEEEE---
Confidence 4889999999999999998664332 1 1222222 46778888888753 1 1 122 2455443
Q ss_pred ccccccccc-eeeecCCcceEEEEEecCcccCCcceeeeeeeeeeeeeeeeccCCCcccccC
Q 046391 94 IEDYRAIEG-VMIAHSGQSSVIITRFGDNLKAGLSITRMEEIWTIDDLAFNVAGLSLDCFIP 154 (176)
Q Consensus 94 i~DYR~VdG-i~IAH~G~t~vtl~RfGe~~~~~~~~trmEE~WtIeev~FNV~GLS~DcFiP 154 (176)
+.+|+.++| +.+++ ....-+ +..+ ..|.|+ +.++.||. +|.-..|=|
T Consensus 185 ~~~~~~~~g~~~~~~-------~~~~~d-l~~g-~~t~~~----~~~~~~~~-~~~~~~Ft~ 232 (237)
T 3bk5_A 185 FANYKQYLDKYWRAH-------TMAMTN-HQTG-KSTELN----TSDLRFQT-GLEENDFNK 232 (237)
T ss_dssp EEEEEEETTTEEEEE-------EEEEEE-TTTC-CEEEEE----EEEEEECC-CCCGGGGCG
T ss_pred EeeeEEEcceEEEEE-------EEEEEE-CCCC-CEEEEE----EeeEEeCC-CCChHhCCH
Confidence 346777787 55543 222222 2222 256665 55899998 676666644
No 3
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=43.11 E-value=24 Score=29.72 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=32.7
Q ss_pred ceeeeeceeCCcceeEEEeccCchhhhcccCCCceEEEeeeecccccccceeEEEee
Q 046391 14 AQYMGEKRISDIDCFVLKLAANQTDLADRSDSTAEMIKHVIFGYFSQRSGLLVYLED 70 (176)
Q Consensus 14 a~ciGEk~i~geDCFiLkl~a~~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lED 70 (176)
...+|+.+|+|-+|.+|++..--. .| -.+.+ +-.+.|||+++.|-
T Consensus 105 ~~~~g~erVaGr~~~vv~l~PkD~---~r-------y~y~l--WiD~et~lpLk~e~ 149 (295)
T 3m4w_A 105 FISVGRTRIADRLCEVIRVVARDG---TR-------YSYIV--WMDTESKLPMRVDL 149 (295)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTS---CS-------CEEEE--EEETTTCCEEEEEE
T ss_pred EEEcCceEECCeEEEEEEEEECCC---Cc-------eeEEE--EEEccCCCEEEEEE
Confidence 368999999999999999975332 11 13344 45788999988774
No 4
>4hg1_A Putative cytoplasmic protein; PSI-biology, MCSG, midwest center for structural genomics; HET: MLY MSE MLZ PG4; 1.75A {Salmonella enterica subsp} PDB: 4hg1_C* 4hg1_B*
Probab=41.71 E-value=21 Score=30.05 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=23.7
Q ss_pred eeeecCCcceEEEEEecCcccCCcceeeeee
Q 046391 103 VMIAHSGQSSVIITRFGDNLKAGLSITRMEE 133 (176)
Q Consensus 103 i~IAH~G~t~vtl~RfGe~~~~~~~~trmEE 133 (176)
|-|+|.|-+.+.+|----....-..++|||+
T Consensus 126 irI~H~GDQ~i~IY~tE~DenGEYPi~R~E~ 156 (225)
T 4hg1_A 126 IRIDHVGDQAIFIYITERDANGEYPIARMER 156 (225)
T ss_dssp EEECCSSSSEEEEEESCCCTTSCCCEEEEET
T ss_pred EEeccCCCceEEEEEeecccCCCCCceehhh
Confidence 7899999999999976554333466888873
No 5
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=28.81 E-value=23 Score=25.47 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=11.4
Q ss_pred ceeCCcceeEEEec
Q 046391 20 KRISDIDCFVLKLA 33 (176)
Q Consensus 20 k~i~geDCFiLkl~ 33 (176)
...|..|||||..-
T Consensus 34 ssLns~D~FILd~g 47 (114)
T 1svq_A 34 SSLNSGDCFLLDAG 47 (114)
T ss_dssp SSCCTTSEEEEEET
T ss_pred HHcCCCCeEEEecC
Confidence 45688999999875
No 6
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=26.68 E-value=27 Score=24.54 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=11.2
Q ss_pred ceeCCcceeEEEec
Q 046391 20 KRISDIDCFVLKLA 33 (176)
Q Consensus 20 k~i~geDCFiLkl~ 33 (176)
...|..|||||..-
T Consensus 24 ~sLns~d~FILd~g 37 (104)
T 1kcq_A 24 ESFNNGDCFILDLG 37 (104)
T ss_dssp GGCCTTSEEEEECS
T ss_pred HHcCCCCeEEEeCC
Confidence 45688999999864
No 7
>2iqc_A Protein FACF, fanconi anemia group F protein; heat-like repeat, DNA-damage, complex subunit, protein binding; 2.40A {Homo sapiens}
Probab=24.96 E-value=18 Score=30.48 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.0
Q ss_pred eeeeeeeeeeeccCCCc
Q 046391 133 EIWTIDDLAFNVAGLSL 149 (176)
Q Consensus 133 E~WtIeev~FNV~GLS~ 149 (176)
++++-.|=||+|||||+
T Consensus 183 kslKaqDGDFeVpGlSI 199 (210)
T 2iqc_A 183 ETCKAQDGDFEVPGLSI 199 (210)
T ss_dssp HHHHHHTTCCCSTTSCH
T ss_pred HHHHHhcCCcCCCchhH
Confidence 46777788999999995
No 8
>3mh9_C Lipoprotein LPRG; mutant LPRG, glycolipid binding protein, lipid protein, structural genomics, TB structural genomics consor TBSGC; 1.79A {Mycobacterium tuberculosis} SCOP: b.125.1.0 PDB: 3mha_A* 3mh8_A*
Probab=24.71 E-value=1.1e+02 Score=24.65 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=32.4
Q ss_pred CChhh-hhhh---hhcceeeeeceeCCcceeEEEeccCchhhhcc
Q 046391 2 LDPIA-VASV---FSTAQYMGEKRISDIDCFVLKLAANQTDLADR 42 (176)
Q Consensus 2 LDPr~-tA~l---F~~a~ciGEk~i~geDCFiLkl~a~~~~l~ar 42 (176)
|||.. .++| +.+...+|+..|||....-++-.-+++.+.+-
T Consensus 110 ldP~~gl~~lL~~~~dv~~~G~EtvdGv~t~~~tGtv~~~~~~~~ 154 (218)
T 3mh9_C 110 LNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQI 154 (218)
T ss_dssp TCTTTSHHHHHHTEEEEEEEEEEEETTEEEEEEEEEECHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCceecceeEECCEEEEEEEEEECHHHHhhh
Confidence 67754 4666 45668999999999999999988888887754
No 9
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=21.78 E-value=20 Score=29.40 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=32.8
Q ss_pred CceEEEeeeecccccccceeEEE-ee---------eeeee----eeCCCCCCeEEeeccccccc
Q 046391 46 TAEMIKHVIFGYFSQRSGLLVYL-ED---------SYLTR----IQSPGSLPTYWETTMATKIE 95 (176)
Q Consensus 46 ~~EiirH~~~GYFSQrtGLLv~l-ED---------s~Ltr----iq~~~~~~vyWETt~eS~i~ 95 (176)
..=|.-|-.||||.++-||-+.- +. .+|.+ |+..+-..||.|+...+.+-
T Consensus 180 ~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~ 243 (286)
T 3gi1_A 180 KTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIA 243 (286)
T ss_dssp CEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHH
T ss_pred CEEEEECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHH
Confidence 33378999999999999997541 11 01111 12345678999998886543
No 10
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.36 E-value=21 Score=29.07 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCceEEEeeeecccccccceeEE-Eee---------eeeee----eeCCCCCCeEEeecccccc
Q 046391 45 STAEMIKHVIFGYFSQRSGLLVY-LED---------SYLTR----IQSPGSLPTYWETTMATKI 94 (176)
Q Consensus 45 ~~~EiirH~~~GYFSQrtGLLv~-lED---------s~Ltr----iq~~~~~~vyWETt~eS~i 94 (176)
+..=|.-|-.||||.++-||-+. ++. .+|.+ |+..+-..||.|+...+.+
T Consensus 177 ~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~ 240 (284)
T 3cx3_A 177 QKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKV 240 (284)
T ss_dssp CCCEEEEESCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCCHH
T ss_pred CCEEEEECCchHHHHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCcHH
Confidence 33447899999999999999643 111 01111 2334566899998887544
No 11
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.97 E-value=19 Score=29.19 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=31.5
Q ss_pred CceEEEeeeecccccccceeEE-Eee----e-----eeee----eeCCCCCCeEEeecccccc
Q 046391 46 TAEMIKHVIFGYFSQRSGLLVY-LED----S-----YLTR----IQSPGSLPTYWETTMATKI 94 (176)
Q Consensus 46 ~~EiirH~~~GYFSQrtGLLv~-lED----s-----~Ltr----iq~~~~~~vyWETt~eS~i 94 (176)
..=|+-|-.||||.++-||-+. ++. + +|.+ |+..+-..||.|+...+.+
T Consensus 175 ~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~ 237 (284)
T 2prs_A 175 KGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAV 237 (284)
T ss_dssp CCEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHH
T ss_pred CeEEEECccHHHHHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHH
Confidence 3348899999999999999632 111 0 1112 2334566899998877544
No 12
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=20.43 E-value=35 Score=24.36 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=11.0
Q ss_pred ccCCCcccccCCc
Q 046391 144 VAGLSLDCFIPPK 156 (176)
Q Consensus 144 V~GLS~DcFiPP~ 156 (176)
..++++|.|+||+
T Consensus 97 ~~~~~~~~f~~~~ 109 (109)
T 1h3z_A 97 QSTPDLDSLSVPS 109 (109)
T ss_dssp HHCCSGGGSCCCC
T ss_pred hccCCHhhccCCC
Confidence 4589999999996
Done!