Query 046391
Match_columns 176
No_of_seqs 72 out of 74
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 20:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046391.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046391hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1toaa_ c.92.2.2 (A:) Periplas 20.0 9.8 0.00072 28.4 -0.1 21 47-67 163-183 (277)
2 d1sdwa1 b.121.1.2 (A:45-198) P 16.2 24 0.0017 25.1 1.2 29 26-54 36-66 (154)
3 d2cfxa2 d.58.4.2 (A:64-140) Tr 14.4 28 0.0021 21.3 1.1 20 16-35 28-47 (77)
4 d1psza_ c.92.2.2 (A:) Pneumoco 14.2 17 0.0012 27.2 -0.1 47 47-93 177-237 (286)
5 d1svya_ d.109.1.1 (A:) Severin 13.9 29 0.0021 22.2 1.1 12 21-32 26-37 (102)
6 d1pq4a_ c.92.2.2 (A:) Periplas 11.9 16 0.0012 27.6 -0.8 47 49-95 194-252 (289)
7 d2byoa1 b.125.1.3 (A:20-207) P 11.8 86 0.0063 22.7 3.4 43 2-44 96-142 (188)
8 d2dpka1 b.1.27.1 (A:370-502) S 11.6 1.2E+02 0.0089 19.6 3.9 50 83-138 37-90 (133)
9 d1p7ba1 b.1.18.16 (A:152-309) 11.2 46 0.0033 23.6 1.6 23 9-33 5-27 (158)
10 d1xl4a1 b.1.18.16 (A:139-299) 11.1 55 0.004 23.3 2.0 23 10-34 5-27 (161)
No 1
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=20.02 E-value=9.8 Score=28.36 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=17.7
Q ss_pred ceEEEeeeecccccccceeEE
Q 046391 47 AEMIKHVIFGYFSQRSGLLVY 67 (176)
Q Consensus 47 ~EiirH~~~GYFSQrtGLLv~ 67 (176)
.=|..|-.|+||.++-||=+.
T Consensus 163 ~~v~~H~a~~Yf~~~~gl~~~ 183 (277)
T d1toaa_ 163 VLVTAHDAFGYFSRAYGFEVK 183 (277)
T ss_dssp EEEEEESCCHHHHHHHTCEEE
T ss_pred EEEEeccchhhHHHhcCccee
Confidence 346789999999999999654
No 2
>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.24 E-value=24 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.430 Sum_probs=17.0
Q ss_pred ceeEEEeccCch--hhhcccCCCceEEEeee
Q 046391 26 DCFVLKLAANQT--DLADRSDSTAEMIKHVI 54 (176)
Q Consensus 26 DCFiLkl~a~~~--~l~ars~~~~EiirH~~ 54 (176)
-||++++.-+.. ...-.=-++.++++|++
T Consensus 36 ~C~~~~~p~~~~~~i~~~ep~~n~~~VHH~l 66 (154)
T d1sdwa1 36 FCMSMRLPVDEEAFVIDFKPRASMDTVHHML 66 (154)
T ss_dssp EEEEEECSCSSCEEEEEEEEECCTTTEEEEE
T ss_pred EEEEecCCCCCceeEEEEEEcCCCCeeEEEE
Confidence 499999864432 22111125778889884
No 3
>d2cfxa2 d.58.4.2 (A:64-140) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=14.42 E-value=28 Score=21.29 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.1
Q ss_pred eeeeceeCCcceeEEEeccC
Q 046391 16 YMGEKRISDIDCFVLKLAAN 35 (176)
Q Consensus 16 ciGEk~i~geDCFiLkl~a~ 35 (176)
..-=-.+.|+.||+||+.+.
T Consensus 28 V~e~~~vtG~~D~il~v~~~ 47 (77)
T d2cfxa2 28 IEFCYRIAGAACYMLKINAE 47 (77)
T ss_dssp EEEEEEEESSSSEEEEEEES
T ss_pred heEEEEEcCCCCEEEEEEEC
Confidence 33344688999999999765
No 4
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Probab=14.18 E-value=17 Score=27.19 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=29.4
Q ss_pred ceEEEeeeecccccccceeEEEee----------eeeeee----eCCCCCCeEEeeccccc
Q 046391 47 AEMIKHVIFGYFSQRSGLLVYLED----------SYLTRI----QSPGSLPTYWETTMATK 93 (176)
Q Consensus 47 ~EiirH~~~GYFSQrtGLLv~lED----------s~Ltri----q~~~~~~vyWETt~eS~ 93 (176)
.=|..|-.||||.++-||-+..-. .+|.++ +..+-..||.|+...+.
T Consensus 177 ~~i~~H~a~~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~ 237 (286)
T d1psza_ 177 LIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDR 237 (286)
T ss_dssp CEEEEECCCHHHHHHHTCCEEEEESSTTSCSSCHHHHHHHHHHHHTSCCCCEEEETTSCSH
T ss_pred EEEEecchhhhHHHhcCCccccceecccccccChhHHHHHHHHHHhCCceEEEEeCCCCcH
Confidence 346789999999999998654211 111111 22345578888876643
No 5
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=13.88 E-value=29 Score=22.22 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=9.5
Q ss_pred eeCCcceeEEEe
Q 046391 21 RISDIDCFVLKL 32 (176)
Q Consensus 21 ~i~geDCFiLkl 32 (176)
..|.+|||||-.
T Consensus 26 ~L~s~dvfILd~ 37 (102)
T d1svya_ 26 SLNSGDCFLLDA 37 (102)
T ss_dssp GCBTTSEEEEEC
T ss_pred HcCCCCeEEEEc
Confidence 457899999964
No 6
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=11.94 E-value=16 Score=27.60 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEeeeecccccccceeEEEeee--------eeee----eeCCCCCCeEEeeccccccc
Q 046391 49 MIKHVIFGYFSQRSGLLVYLEDS--------YLTR----IQSPGSLPTYWETTMATKIE 95 (176)
Q Consensus 49 iirH~~~GYFSQrtGLLv~lEDs--------~Ltr----iq~~~~~~vyWETt~eS~i~ 95 (176)
|.-|-.||||.++-||-+.--.+ +|.. |+..+-..||.|+...+.+-
T Consensus 194 v~~H~a~~Yf~~~ygl~~~~~~~~~~eps~~~l~~l~~~ik~~~i~~if~e~q~~~~~~ 252 (289)
T d1pq4a_ 194 IVFHPSWAYFARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQFSTKSS 252 (289)
T ss_dssp EESSCCCHHHHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCCHHH
T ss_pred eeecccHHHHHHhcCceeeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcHHH
Confidence 77899999999999996542111 0100 12234457777777665443
No 7
>d2byoa1 b.125.1.3 (A:20-207) Putative lipoprotein LppX {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.77 E-value=86 Score=22.69 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=29.5
Q ss_pred CChhh-hhhh---hhcceeeeeceeCCcceeEEEeccCchhhhcccC
Q 046391 2 LDPIA-VASV---FSTAQYMGEKRISDIDCFVLKLAANQTDLADRSD 44 (176)
Q Consensus 2 LDPr~-tA~l---F~~a~ciGEk~i~geDCFiLkl~a~~~~l~ars~ 44 (176)
|||-. .++| +.++..+|+..|||..|.-++-..+.+.+..=..
T Consensus 96 ldP~~gl~~lLa~~~d~~~~G~EtvdG~~t~~~tgtv~~~~~~~~~~ 142 (188)
T d2byoa1 96 LDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDP 142 (188)
T ss_dssp -----CCCCCSTTCEEEEEEEEEEETTEEEEEEEEEECHHHHHHHCT
T ss_pred cChhHhHHHHhhhcCCceeccceEECCEEEEEEEEEeCHHHHHhhcc
Confidence 46655 3444 3466899999999999999998888887765433
No 8
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=11.60 E-value=1.2e+02 Score=19.65 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=28.8
Q ss_pred CeEEeecccccc--cccccccceeeecCCcce--EEEEEecCcccCCcceeeeeeeeeee
Q 046391 83 PTYWETTMATKI--EDYRAIEGVMIAHSGQSS--VIITRFGDNLKAGLSITRMEEIWTID 138 (176)
Q Consensus 83 ~vyWETt~eS~i--~DYR~VdGi~IAH~G~t~--vtl~RfGe~~~~~~~~trmEE~WtIe 138 (176)
.|.|.|.=.|-. +||.++.|...=..|.+. +++.-+.+. .-...|+-.|.
T Consensus 37 ~V~~~t~~gtA~~g~Dy~~~~g~i~F~~Ge~~~~i~V~i~~D~------~~E~~E~F~v~ 90 (133)
T d2dpka1 37 FVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDD------IFEEDENFLVH 90 (133)
T ss_dssp EEEEEEEESSSCBTTTBCCCEEEEEECTTCCEEEEEEEBCCCS------SCCCCEEEEEE
T ss_pred EEEEEEcCCcccccceEeccCCeEEECCCCeEEEEEEEEEcCC------CCcCCEEEEEE
Confidence 677877654433 599999994444455544 444445543 23455665553
No 9
>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=11.19 E-value=46 Score=23.57 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=19.9
Q ss_pred hhhhcceeeeeceeCCcceeEEEec
Q 046391 9 SVFSTAQYMGEKRISDIDCFVLKLA 33 (176)
Q Consensus 9 ~lF~~a~ciGEk~i~geDCFiLkl~ 33 (176)
-+||+-.||. +.||..|+..|+.
T Consensus 5 I~FS~~Avi~--~~dG~~~LmfRv~ 27 (158)
T d1p7ba1 5 IMFARHAIVR--PFNGRMTLMVRAA 27 (158)
T ss_dssp CEECSCEEEE--ECSSSEEEEEEEE
T ss_pred EEEeCcEEEE--EECCEEEEEEEEe
Confidence 5799999987 5699999999995
No 10
>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=11.07 E-value=55 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=19.5
Q ss_pred hhhcceeeeeceeCCcceeEEEecc
Q 046391 10 VFSTAQYMGEKRISDIDCFVLKLAA 34 (176)
Q Consensus 10 lF~~a~ciGEk~i~geDCFiLkl~a 34 (176)
+||+-.+|. +.||..|+..|+.-
T Consensus 5 ~FS~~Avi~--~~dG~~~LmfRv~n 27 (161)
T d1xl4a1 5 LFSSRMVIS--DFEGKPTLMMRLAN 27 (161)
T ss_dssp EECSCEEEE--EETTEEEEEEEEEE
T ss_pred EeeCcEEEE--EECCEEEEEEEEec
Confidence 699988986 47999999999853
Done!