BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046392
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 198/370 (53%), Gaps = 24/370 (6%)
Query: 1 LVIDFFCKAALQVSSSLNIPTYFFFTSGATALAQILHYPNLKNITDNDCFRVDAESEMLL 60
LV+D F A V+ ++P Y F+ + A L+ LH P L + FR E ML
Sbjct: 114 LVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCE-FRELTEPLML- 171
Query: 61 DHIPGLPPIRAKEMFPP----DDSVLKNTIDTAIQMTKSCGIIINTFETLEQRASQALKD 116
PG P+ K+ P D K + + ++ GI++NTF LE A +AL++
Sbjct: 172 ---PGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE 228
Query: 117 GKCVPNGETMPPVYCLGPV--LAATVDNKNDYHMCLSWLDLQPKQSVVFLCFGSMVFFSS 174
G PPVY +GP+ + + + CL WLD QP SV+++ FGS +
Sbjct: 229 -----PGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTC 283
Query: 175 KQLKEMAIGLERSRVRFLWVVLVPPPEDEFRRNLAVADAEVSVE--MFLPEDFLERTRDR 232
+QL E+A+GL S RFLWV+ P N + D+ + FLP FLERT+ R
Sbjct: 284 EQLNELALGLADSEQRFLWVIRSP----SGIANSSYFDSHSQTDPLTFLPPGFLERTKKR 339
Query: 233 GLVVKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSFLVED 292
G V+ WAPQ VL+H S GGF+THCGWNS +E++ +G+P++AWP +Q +N L ED
Sbjct: 340 GFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
Query: 293 IEVAVPVVESEDGLVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGALREGGCSL 352
I A+ +DGLV E+ + V LM+ E GKG +R + + LKE A L++ G S
Sbjct: 400 IRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKG--VRNKMKELKEAACRVLKDDGTST 457
Query: 353 AALAELAARF 362
AL+ +A ++
Sbjct: 458 KALSLVALKW 467
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 201/373 (53%), Gaps = 48/373 (12%)
Query: 1 LVIDFFCKAALQVSSSLNIPTYFFFTSGATALAQILHYPNLKNITDNDCFRVDAESEMLL 60
LV+DFFC + + V + IP+Y F TS L+ +L +LKN + F D++ + L
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLML---SLKNRQIEEVFD-DSDRDHQL 173
Query: 61 DHIPGLPPIRAKEMFPP----DDSVLKNTIDTAIQMTKSCGIIINTFETLEQRASQALKD 116
+IPG+ + P D A + + GII+NTF LEQ + AL D
Sbjct: 174 LNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYD 233
Query: 117 GKCVPNGETMPPVYCLGPVLAATVD-----NKNDYHMCLSWLDLQPKQSVVFLCFGSM-V 170
+ E +PP+Y +GP+L ++ + + L WLD QP +SVVFLCFGSM V
Sbjct: 234 -----HDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV 288
Query: 171 FFSSKQLKEMAIGLERSRVRFLWVVLVPPPEDEFRRNLAVADAEVSVEMFLPEDFLE--R 228
F Q++E+A+GL+ S VRFLW AE V PE FLE
Sbjct: 289 SFGPSQIREIALGLKHSGVRFLWS----------------NSAEKKV---FPEGFLEWME 329
Query: 229 TRDRGLVVKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSF 288
+G++ WAPQ +VL+H ++GGFV+HCGWNS++E++ GVP++ WP +Q +N
Sbjct: 330 LEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFR 388
Query: 289 LVEDIEVAVPV-VESEDG--LVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGAL 345
LV++ V + + V+ G +V E+EK + +LMD K ++ ++ + +KE + A+
Sbjct: 389 LVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD----KDSIVHKKVQEMKEMSRNAV 444
Query: 346 REGGCSLAALAEL 358
+GG SL ++ +L
Sbjct: 445 VDGGSSLISVGKL 457
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 201/373 (53%), Gaps = 48/373 (12%)
Query: 1 LVIDFFCKAALQVSSSLNIPTYFFFTSGATALAQILHYPNLKNITDNDCFRVDAESEMLL 60
LV+DFFC + + V + IP+Y F TS L+ +L +LKN + F D++ + L
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLML---SLKNRQIEEVFD-DSDRDHQL 173
Query: 61 DHIPGLPPIRAKEMFPP----DDSVLKNTIDTAIQMTKSCGIIINTFETLEQRASQALKD 116
+IPG+ + P D A + + GII+NTF LEQ + AL D
Sbjct: 174 LNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYD 233
Query: 117 GKCVPNGETMPPVYCLGPVLAATVD-----NKNDYHMCLSWLDLQPKQSVVFLCFGSM-V 170
+ E +PP+Y +GP+L ++ + + L WLD QP +SVVFLCFGSM V
Sbjct: 234 -----HDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV 288
Query: 171 FFSSKQLKEMAIGLERSRVRFLWVVLVPPPEDEFRRNLAVADAEVSVEMFLPEDFLE--R 228
F Q++E+A+GL+ S VRFLW AE V PE FLE
Sbjct: 289 SFGPSQIREIALGLKHSGVRFLWS----------------NSAEKKV---FPEGFLEWME 329
Query: 229 TRDRGLVVKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSF 288
+G++ WAPQ +VL+H ++GGFV+HCGWNS++E++ GVP++ WP +Q +N
Sbjct: 330 LEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFR 388
Query: 289 LVEDIEVAVPV-VESEDG--LVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGAL 345
LV++ V + + V+ G +V E+EK + +LMD K ++ ++ + +KE + A+
Sbjct: 389 LVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD----KDSIVHKKVQEMKEMSRNAV 444
Query: 346 REGGCSLAALAEL 358
+GG SL ++ +L
Sbjct: 445 VDGGSSLISVGKL 457
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 186/381 (48%), Gaps = 52/381 (13%)
Query: 1 LVIDFFCKAALQVSSSLNIPTYFFFTSGATALAQILHYPNL--KNIT--DNDCFRVDAES 56
LV D +Q + +P +F+S A +L ++H+ + + I ++ + +
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCL 181
Query: 57 EMLLDHIPGLPPIRAKEMFP------PDDSVLKNTIDTAIQMTKSCGIIINTFETLEQRA 110
E +D IPGL R K++ P+D +L+ I+ A ++ K I++NTF LE
Sbjct: 182 ETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
Query: 111 SQALKDGKCVPNGETMPPVYCLGPVLAATVDNKNDYHM-------------CLSWLDLQP 157
AL T+P +Y +GP+ + + + CL WL+ +
Sbjct: 242 INAL--------SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKE 293
Query: 158 KQSVVFLCFGSMVFFSSKQLKEMAIGLERSRVRFLWVVLVPPPEDEFRRNLAVADAEVSV 217
SVV++ FGS + +QL E A GL + FLW++ R +L + +
Sbjct: 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWII---------RPDLVIGGS---- 340
Query: 218 EMFLPEDFLERTRDRGLVVKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWP 277
+ +F DRGL+ SW PQ VL+H S+GGF+THCGWNS E++CAGVPM+ WP
Sbjct: 341 -VIFSSEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWP 398
Query: 278 FIGDQMVNRSFLVEDIEVAVPVVESEDGLVYGAELEKRVIELMDSENGKGKVLRERTRAL 337
F DQ + F+ + E+ + + D V EL K + E++ + KGK ++++ L
Sbjct: 399 FFADQPTDCRFICNEWEIGMEI----DTNVKREELAKLINEVIAGD--KGKKMKQKAMEL 452
Query: 338 KEKAMGALREGGCSLAALAEL 358
K+KA R GGCS L ++
Sbjct: 453 KKKAEENTRPGGCSYMNLNKV 473
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 177/362 (48%), Gaps = 49/362 (13%)
Query: 1 LVIDFFCKAALQVSSSLNIPTYFFFTSGATALAQILHYPNLKNITDNDCFRVDAESEMLL 60
LV D F A +++ + + F+T+G +L+ ++ ++ + + LL
Sbjct: 116 LVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSG--IQGREDELL 173
Query: 61 DHIPGLPPIRAKEM-----FPPDDSVLKNTIDTAIQ-MTKSCGIIINTFETLEQRASQAL 114
+ IPG+ +R +++ F +S+ + Q + K+ + IN+FE L+ + L
Sbjct: 174 NFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDL 233
Query: 115 KDG-----KCVPNGETMPPVYCLGPVLAATVDNKNDYHMCLSWLDLQPKQSVVFLCFGSM 169
K P PP PV+ T CL WL + SVV++ FG++
Sbjct: 234 KSKLKTYLNIGPFNLITPP-----PVVPNTTG-------CLQWLKERKPTSVVYISFGTV 281
Query: 170 VFFSSKQLKEMAIGLERSRVRFLWVVLVPPPEDEFRRNLAVADAEVSVEMFLPEDFLERT 229
++ ++ LE SRV F+W + D+ R + LPE FLE+T
Sbjct: 282 TTPPPAEVVALSEALEASRVPFIWSL-----RDKAR-------------VHLPEGFLEKT 323
Query: 230 RDRGLVVKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSFL 289
R G+VV WAPQ +VL+H++VG FVTHCGWNS+ E++ GVP++ PF GDQ +N +
Sbjct: 324 RGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMV 382
Query: 290 VEDIEVAVPVVESEDGLVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGALREGG 349
+ +E+ V + E G+ + L +++ E KGK LRE RAL+E A A+ G
Sbjct: 383 EDVLEIGVRI---EGGVFTKSGLMSCFDQILSQE--KGKKLRENLRALRETADRAVGPKG 437
Query: 350 CS 351
S
Sbjct: 438 SS 439
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 150/304 (49%), Gaps = 50/304 (16%)
Query: 60 LDHIPGLPPIRAKEMFPPDDSVLKNTIDT---------AIQMTKSCGIIINTFETLEQRA 110
+D +PG P ++A ++ + V+K+ ID +++ ++ + IN+F T+
Sbjct: 176 IDVLPGFPELKASDL---PEGVIKD-IDVPFATMLHKMGLELPRANAVAINSFATIHPLI 231
Query: 111 SQALKDG-KCVPNGETMPPVYCLGPVLAATVDNK-NDYHMCLSWLDLQPKQSVVFLCFGS 168
L K + N +GP T K +D H CL WLD SVV++ FGS
Sbjct: 232 ENELNSKFKLLLN---------VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGS 282
Query: 169 MVFFSSKQLKEMAIGLERSRVRFLWVVLVPPPEDEFRRNLAVADAEVSVEMFLPEDFLER 228
+V +L +A LE F+W P E LP+ FLER
Sbjct: 283 VVTPPPHELTALAESLEECGFPFIWSFRGDPKEK------------------LPKGFLER 324
Query: 229 TRDRGLVVKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSF 288
T+ +G +V +WAPQ ++L H SVG F+TH GWNSV+E + GVPM++ PF GDQ +N
Sbjct: 325 TKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTIL 383
Query: 289 LVEDIEVAVPVVESEDGLVYGAELEKRVIEL-MDSENGKGKVLRERTRALKEKAMGALRE 347
+E+ V V D V E K+ +EL M SE KG ++R++ LKE A A+ +
Sbjct: 384 TESVLEIGVGV----DNGVLTKESIKKALELTMSSE--KGGIMRQKIVKLKESAFKAVEQ 437
Query: 348 GGCS 351
G S
Sbjct: 438 NGTS 441
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 236 VKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSFLVE 291
V W PQ D+L+ S F+TH G S +EAL VPMVA P I +Q +N +VE
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 239 WAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVN 285
W PQ D+L H F+TH G N + EA+ G+P V P DQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 236 VKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQM 283
++SW PQ +L H + V H G + + AL AGVP +++P+ GD
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 236 VKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSFLVEDIEV 295
V W PQ +L + FVTH G E L PM+A P DQ N L + + V
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGV 343
Query: 296 AVPVVESEDGLVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGALREGGCSLAA- 354
A + E L + + L+D +V R R E A +EGG AA
Sbjct: 344 ARKLATEE---ATADLLRETALALVDDP----EVARRLRRIQAEMA----QEGGTRRAAD 392
Query: 355 --LAELAARFDKEWSTDD 370
AEL AR +++ D
Sbjct: 393 LIEAELPARHERQEPVGD 410
>pdb|2L3Y|A Chain A, Solution Structure Of Mouse Il-6
Length = 190
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 30/127 (23%)
Query: 232 RGLVVKSWAPQTDVLSHDSVGGFVTHCGWNSV--IEALCAGVPMVAWPFIGDQMVNRSFL 289
RG + P V + VGG +TH W V + LC G D M N L
Sbjct: 11 RGDFTEDTTPNRPVYTTSQVGGLITHVLWEIVEMRKELCNGN--------SDCMNNDDAL 62
Query: 290 VEDIEVAVPVVESEDG-------------------LVYGAELEKRVIELMDSENGKGKVL 330
E+ + +P ++ DG L Y + LE L D++ K +VL
Sbjct: 63 AEN-NLKLPEIQRNDGCYQTGYNQEICLLKISSGLLEYHSYLEYMKNNLKDNKKDKARVL 121
Query: 331 RERTRAL 337
+ T L
Sbjct: 122 QRDTETL 128
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 243 TDVL---SHDSVGGFVTHCGWNSV--------IEALCAGVPMVAWPFIGDQMVNRSFLVE 291
TD+L + D +GG + + + +E + G WP + + R+F
Sbjct: 29 TDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFR-S 87
Query: 292 DIEVAVPVVESEDGLVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGAL 345
D + V EDG VY + ++ IEL DS G+ L A M L
Sbjct: 88 DFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSIL 141
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 243 TDVL---SHDSVGGFVTHCGWNSV--------IEALCAGVPMVAWPFIGDQMVNRSFLVE 291
TD+L + D +GG + + + +E + G WP + + R+F
Sbjct: 29 TDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFR-S 87
Query: 292 DIEVAVPVVESEDGLVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGAL 345
D + V EDG VY + ++ IEL DS G+ L A M L
Sbjct: 88 DFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSIL 141
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 237 KSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQ 282
W P VL+H +TH +V+EA AGVP+V P +
Sbjct: 286 HQWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 239 WAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWP 277
W P VL +V VTH G ++ EAL G P+V P
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP 340
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 239 WAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWP 277
W P VL +V VTH G ++ EAL G P+V P
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP 340
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 231 DRGLVVKSWAPQTDVLSHDSVGGFVTHCGWNSVIEALCAGVPMVAWPFIGDQMVNRSFLV 290
DR ++K P + VGG + G ++++E C G+P++ P+ + FL
Sbjct: 266 DRFGILKELYPVGKI---AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFL- 321
Query: 291 EDIEVAVPVVESEDGLVYGAELEKRVIELMDSENGKGKVLRERTRALKEKAMGALRE 347
+ E A V++E EL ++ EL+ + K + E++R +K + LRE
Sbjct: 322 -EKEGAGFEVKNE------TELVTKLTELLSVK--KEIKVEEKSREIKGCYLEKLRE 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,943,125
Number of Sequences: 62578
Number of extensions: 432150
Number of successful extensions: 1068
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 18
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)