BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046394
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL-DFSRKDSGDFSG 207
H+ PV+ + FHP +M ++ +D IK+WD + +TL GH ++ D S SG
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGE 255
S + + + +G++ + GH VS + I +G+
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMH---------GHDHNVSSVSIMPNGD 205
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H V ++F +G L+A+ D IK+WD + +E ++T+ GH
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH---AK 193
VS G T++ H V + FH G + + D +++WD + ++TL H
Sbjct: 325 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384
Query: 194 TLDFSR 199
+LDF +
Sbjct: 385 SLDFHK 390
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSR 199
TM H VS+++ PNG + ++ +D IK+W+++ ++T GH + + R
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V+ +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 306
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ +++
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVN 266
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 142
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 429
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 511
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 552
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 101
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 183
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 224
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 388
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
H V +AF P+G +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 60
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+G +A++ D +K+W+ R + LQTL GH+ ++
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSV 347
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
T+ H V +AF P+ +A++ D +K+W+ R ++LQTL GH+ ++
Sbjct: 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 470
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
T+ H V +AF P+G +A++ D +K+W+
Sbjct: 544 TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 130 VNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLP 189
+N F+ ++ G T+ H P+ +L F P+ L+ T+ D IKI+D++ + TL
Sbjct: 188 INIFD--IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS 245
Query: 190 GHA 192
GHA
Sbjct: 246 GHA 248
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---KTLDFS 198
+ ++A+ P+G +A+ D I I+D+ ++L TL GHA ++L FS
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 175
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 176 AVHFNRDGSLIVSSSYD 192
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGD 204
T+ H VS++ F PNG +A+S D IKIW + +T+ GH + D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI-------SD 92
Query: 205 FSGSHNYNRYMGYSMVKGYQIGKVS 229
+ S + N + S K +I VS
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVS 117
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 129
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 118 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 177
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 178 AVHFNRDGSLIVSSSYD 194
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 88
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
T+ H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 131
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 170
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 171 AVHFNRDGSLIVSSSYD 187
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 81
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 124
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 157 AVHFNRDGSLIVSSSYD 173
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 154 AVHFNRDGSLIVSSSYD 170
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 157 AVHFNRDGSLIVSSSYD 173
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A S D IKIW + +T+ GH
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 160 AVHFNRDGSLIVSSSYD 176
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 154 AVHFNRDGSLIVSSSYD 170
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 157 AVHFNRDGSLIVSSSYD 173
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 90 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 149
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 150 AVHFNRDGSLIVSSSYD 166
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 60
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 103
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 160 AVHFNRDGSLIVSSSYD 176
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 95 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 154
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 155 AVHFNRDGSLIVSSSYD 171
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 65
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 108
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 93 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 152
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 153 AVHFNRDGSLIVSSSYD 169
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 106
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 99 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 158
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 159 AVHFNRDGSLIVSSSYD 175
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 69
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 112
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ + L+TLP H+
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 160 AVHFNRDGSLIVSSSYD 176
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 149 HQGPVSALAFHPNGH--LMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSR 199
H V+ F + H L+AT DC +K+WDL + E T+ GH +++ R
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCR 756
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
H+ V AF + +AT D K+KIW+ E++ T H++ ++
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVN 709
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
TM H V+ F P+ L+A+ D +K+WD
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
+ ++ F P+G +AT +D I+IWD+ +++ L GH + +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
H+ + +L + P+G + + D ++IWDLR + TL
Sbjct: 164 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ L+TLP H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 157 AVHFNRDGSLIVSSSYD 173
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
T+ H G VS +A P+G L A+ GKD + +WDL + + L +L ++
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---K 193
VS G T+ H V F+P +L+ + D ++IWD++ L+TLP H+
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
Query: 194 TLDFSRKDSGDFSGSHN 210
+ F+R S S S++
Sbjct: 157 AVHFNRDGSLIVSSSYD 173
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
V G T+ H PVSA+ F+ +G L+ +S D +IWD + L+TL
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
T+ H VS++ F PNG +A+S D IKIW + +T+ GH
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
PVS + F PNG + + D +K+WD K + L+T GH
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H+ +S +A+ + +L+ ++ D +KIWD+ + L+TL GH+
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179
T H+ V+ L+ PNG +AT GKD K+ IWD+
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179
HQ V ++AF P+ + ++G + +IK+W++
Sbjct: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL-DFSRKDSG 203
H ++ L F P+G + +S +D ++KIW ++ +TL GH T+ D + D G
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 190
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLP 189
+ H G V L + P+G +A++ D IKIW++ +V +T+P
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL-DFSRKDSG 203
H ++ L F P+G + +S +D ++KIW ++ +TL GH T+ D + D G
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
H G V +L+ P+ L + D K+WD+R+ QT GH
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187
H+ ++A+ F PNG+ AT D +++DLR + L T
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
H G V +L+ P+ L + D K+WD+R+ QT GH
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187
H+ ++A+ F PNG+ AT D +++DLR + L T
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
H G V +L+ P+ L + D K+WD+R+ QT GH
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187
H+ ++A+ F PNG+ AT D +++DLR + L T
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
H G V +L+ P+ L + D K+WD+R+ QT GH
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 236
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187
H+ ++A+ F PNG+ AT D +++DLR + L T
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
H G V +L+ P+ L + D K+WD+R+ QT GH
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187
H+ ++A+ F PNG+ AT D +++DLR + L T
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGS 208
H ++ L P+G L+A++GKD +I +W+L + + TL + FS +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV----------FSLA 244
Query: 209 HNYNRY 214
+ NRY
Sbjct: 245 FSPNRY 250
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGS 208
H ++ L P+G L+A++GKD +I +W+L + + TL + FS +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV----------FSLA 244
Query: 209 HNYNRY 214
+ NRY
Sbjct: 245 FSPNRY 250
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGS 208
H ++ L P+G L+A++GKD +I +W+L + + TL + FS +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV----------FSLA 244
Query: 209 HNYNRY 214
+ NRY
Sbjct: 245 FSPNRY 250
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGS 208
H ++ L P+G L+A++GKD +I +W+L + + TL + FS +
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV----------FSLA 244
Query: 209 HNYNRY 214
+ NRY
Sbjct: 245 FSPNRY 250
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGS 208
H ++ L P+G L+A++GKD +I +W+L + + TL + FS +
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV----------FSLA 238
Query: 209 HNYNRY 214
+ NRY
Sbjct: 239 FSPNRY 244
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 99 NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAF 158
N G + GE +G+ + V + SLG H V +L+F
Sbjct: 265 NSFGCITLYETEFGERIGS----------LSVPTHSSQASLGE-----FAHSSWVMSLSF 309
Query: 159 HPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
+ +G + ++G D K++ WD++ E + TL H ++
Sbjct: 310 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 347
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 99 NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAF 158
N G + GE +G+ + V + SLG H V +L+F
Sbjct: 255 NSFGCITLYETEFGERIGS----------LSVPTHSSQASLGE-----FAHSSWVMSLSF 299
Query: 159 HPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
+ +G + ++G D K++ WD++ E + TL H ++
Sbjct: 300 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 337
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDL---RKYEVLQTLPGHAKTL 195
H+ V ++A+ P+G+L+AT +D + +W++ +YE + L H + +
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL-----DFSRKDSG 203
H+ V +LAF P+G +A+ D ++IW R+Y LPG+ + + D S K
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW--RQY-----LPGNEQGVACSGSDPSWKCIC 245
Query: 204 DFSGSHNYNRY-MGYSMVKG 222
SG H+ Y + + + G
Sbjct: 246 TLSGFHSRTIYDIAWCQLTG 265
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 140 GHSGGTMLC-------HQGPVSALAFHPNGHLMATSGKDCKIKIW--DLRKYEVLQTLPG 190
G G + +C HQ V +A+ P G+ +A++ D IW + +E + TL G
Sbjct: 44 GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG 103
Query: 191 H 191
H
Sbjct: 104 H 104
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPG 190
H G ++ + P+G L A+ GKD + +WDL + + L TL G
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPG 190
H G ++ + P+G L A+ GKD + +WDL + + L TL G
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDF 205
+ H ++ L P+G L+A++GKD +I +W+L + TL + F
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV----------F 241
Query: 206 SGSHNYNRY 214
S + + NRY
Sbjct: 242 SLAFSPNRY 250
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA 192
H V+++ P+G L A+S KD ++WDL K E L + A
Sbjct: 195 HTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT 194
L H V ++AF P+ + + G+D +++W++ K E + TL A T
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHT 152
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 123 GRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP--NGHLMATSGKDCKIKIWDLR 180
GR + +RV G S G H VS + F P + ++ + G D +K+WDL
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGA---HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 181 KYEVLQTLPGH 191
++ L GH
Sbjct: 185 TGRLVTDLKGH 195
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 141 HSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT 194
H GT+ H V LA+ +G +A+ G D ++IWD R ++P KT
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-----SIPKFTKT 256
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 43/227 (18%)
Query: 8 GYLEAE--GVEKTWRIKQEAIAREVDILSSRNQYDI-MLPELGPYTLDFT-SSGRYMAAA 63
G+L A G+E R+++ R V L D+ + G TLD GRYM +
Sbjct: 3 GFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSG 62
Query: 64 GCKGYPYFYNRDGTELH--------CS--KEHGEVLKLQ-------------FLLASINK 100
G G Y+ + + CS ++H +V + F +S +K
Sbjct: 63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122
Query: 101 LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GTMLC----------- 148
++ N V NF + + V+ + +V++G G LC
Sbjct: 123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182
Query: 149 --HQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYE-VLQTLPGH 191
H+ + A+++ P +++AT+ D ++K+WD+R+ L TL H
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRK 200
H G V+ L F +G + T G D ++++W+ E TL + K + S+K
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--NTLVNYGKVCNNSKK 293
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 160 PNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFS 198
P+ M T+ D IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
T+ H VS FHP ++ + +D +KIW+ Y+V +TL
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 119 WTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
W +G D R+ FN + G H + ++A HP + + D +K+W+
Sbjct: 69 WIIVGSDD-FRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 179 LR-KYEVLQTLPGH---AKTLDFSRKDSGDFS 206
+ + QT GH + F+ KD F+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 160 PNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFS 198
P+ M T+ D IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
T+ H VS FHP ++ + +D +KIW+ Y+V +TL
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 119 WTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
W +G D R+ FN + G H + ++A HP + + D +K+W+
Sbjct: 69 WIIVGSDD-FRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 179 LR-KYEVLQTLPGH---AKTLDFSRKDSGDFS 206
+ + QT GH + F+ KD F+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 160 PNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFS 198
P+ M T+ D IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
T+ H VS FHP ++ + +D +KIW+ Y+V +TL
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 119 WTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
W +G D R+ FN + G H + ++A HP + + D +K+W+
Sbjct: 69 WIIVGSDD-FRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 179 LR-KYEVLQTLPGH---AKTLDFSRKDSGDFSG 207
+ + QT GH + F+ KD F+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 160 PNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFS 198
P+ M T+ D IKIWD + + TL GH + F+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
T+ H VS FHP ++ + +D +KIW+ Y+V +TL
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 119 WTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
W +G D R+ FN + G H + ++A HP + + D +K+W+
Sbjct: 69 WIIVGSDD-FRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 179 LR-KYEVLQTLPGH---AKTLDFSRKDSGDFSG 207
+ + QT GH + F+ KD F+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
H V L+ +G + GKD +K+WDL + VL++ H+ ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPG 190
V G+ T+ HQ S + N ++ + D +KIWD++ + LQTL G
Sbjct: 306 VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQG 357
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
HQ V+ L F+ N + TS D +K+WDL+ E ++ L
Sbjct: 361 HQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
G ++ H GP+S L F+ L+ ++ D ++IW GH++++
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSI 292
>pdb|2NQH|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
Endonuclease Iv (Endo Iv) E261q Mutant
pdb|2NQJ|A Chain A, Crystal Structure Of Escherichia Coli Endonuclease Iv
(Endo Iv) E261q Mutant Bound To Damaged Dna
pdb|2NQJ|B Chain B, Crystal Structure Of Escherichia Coli Endonuclease Iv
(Endo Iv) E261q Mutant Bound To Damaged Dna
Length = 285
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKI 176
C Q +S L FHP HLM S +DC +I
Sbjct: 98 CEQLGLSLLNFHPGSHLMQISEEDCLARI 126
>pdb|1QUM|A Chain A, Crystal Structure Of Escherichia Coli Endonuclease Iv In
Complex With Damaged Dna
pdb|1QTW|A Chain A, High-resolution Crystal Structure Of The Escherichia Coli
Dna Repair Enzyme Endonuclease Iv
Length = 285
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKI 176
C Q +S L FHP HLM S +DC +I
Sbjct: 98 CEQLGLSLLNFHPGSHLMQISEEDCLARI 126
>pdb|2NQ9|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
Endonuclease Iv (Endo Iv) Y72a Mutant Bound To Damaged
Dna
Length = 285
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKI 176
C Q +S L FHP HLM S +DC +I
Sbjct: 98 CEQLGLSLLNFHPGSHLMQISEEDCLARI 126
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 141 HSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSR 199
HS CH N L+AT D +K+WDL + E T+ GH +++ R
Sbjct: 698 HSEQVNCCH------FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR 180
TM H V+ F P+ L+A+ D +++WD+R
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
H+ V AF + +AT D K+KIWD +++ T H++ ++
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN 703
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
CHQG V + A + +++ D KIW L L GH
Sbjct: 1083 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 141 HSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSR 199
HS CH N L+AT D +K+WDL + E T+ GH +++ R
Sbjct: 705 HSEQVNCCH------FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 757
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR 180
TM H V+ F P+ L+A+ D +++WD+R
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
H+ V AF + +AT D K+KIWD +++ T H++ ++
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN 710
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
CHQG V + A + +++ D KIW L L GH
Sbjct: 1090 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1133
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 149 HQGPVSALAFHPNGH-LMATSGKDCKIKIWDLR 180
H+ V+ F+P LMATS D +K+WDLR
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 149 HQGPVSALAFHPNGH-LMATSGKDCKIKIWDLR 180
H+ V+ F+P LMATS D +K+WDLR
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 136 VVSLGHSGGT-----MLC-HQGPVSALAFHP-NGHLMATSGKDCKIKIWD-------LRK 181
V+ LG +G ++C H PV +A+ P N +++A+ +DC + +W+ L
Sbjct: 61 VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120
Query: 182 YEVLQTLPGHAK 193
E + TL GH K
Sbjct: 121 REPVITLEGHTK 132
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWD--LRKYEVLQTLPGHAKTL---DFSRKD-- 201
H V + +HP+ L+A+S D ++IW +E + L GH T+ DF + +
Sbjct: 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211
Query: 202 ----SGDFSGSHNYNRYMG 216
SG + +YMG
Sbjct: 212 FRLCSGSDDSTVRVWKYMG 230
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDL----RKYEVLQTLPGHAKTL 195
H+ V +A+ +G+ +AT +D + IW+ +YE + L H++ +
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 152 PVSALAFHPNG-HLMATSGKDCKIKIWDLRK 181
P+ + HPN H++AT G+D + IWD+R+
Sbjct: 238 PLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
H+ P++ + ++ G L+ + KD +W E L TL GH T+
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 155 ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH---AKTLDFSRKDSGDFSGSHNY 211
ALA P+ + + D I +WDL +++ GH A +D S + ++G +
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD- 204
Query: 212 NRYMGYSMVKGYQIGKVSF 230
N + + +G Q+ + F
Sbjct: 205 NTVRSWDLREGRQLQQHDF 223
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 149 HQGPVSALAFHP-NGHLMATSGKDCKIKIWD-------LRKYEVLQTLPGHAK 193
H PV +A+ P N +++A+ +DC + +W+ L E + TL GH K
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-KYEVL----QTLPGHAKTLDFSRKDSG 203
H+ V+++ ++P+G A+ D +++DLR EV +++ A ++DFS
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 204 DFSGSHNYNRYMGYSMVKGYQI 225
F+G ++Y + + ++KG ++
Sbjct: 299 LFAGYNDYTINV-WDVLKGSRV 319
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDF----SRKDSGD 204
H VS ++ +G + KD IK+WDL + VL + HA + KDS
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 205 FSGSHNYNRYM 215
S S + NR +
Sbjct: 186 LSCSED-NRIL 195
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 145 TMLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEV-LQTLPGH 191
T+ H V+ L+F+P + ++AT D + +WDLR ++ L + H
Sbjct: 274 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 322
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 145 TMLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEV-LQTLPGH 191
T+ H V+ L+F+P + ++AT D + +WDLR ++ L + H
Sbjct: 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 145 TMLCHQGPVSALAFHPNGH-LMATSGKDCKIKIWDLRKYEV-LQTLPGH 191
T+ H V+ L+F+P ++AT D + +WDLR ++ L + H
Sbjct: 276 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 324
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 23/111 (20%)
Query: 89 LKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLC 148
LK Q +I K Q + +G I G R + +NP N T C
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEG-------RVAIHYINPPNP----AKDNFTFKC 259
Query: 149 HQG------------PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187
H+ V+ +AFHP +AT G D + WD L+T
Sbjct: 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 148 CHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEV-LQTLPGH 191
H V+ L+F+P + ++AT D + +WDLR ++ L T H
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 148 CHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEV-LQTLPGH 191
H V+ L+F+P + ++AT D + +WDLR ++ L T H
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P +G P
Sbjct: 251 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-AGSPE 309
Query: 258 F 258
F
Sbjct: 310 F 310
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ 186
H+G ++++ F P+G T D +++D+R LQ
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 167 TSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSR 199
++ D I+IWDL E++ TL GH + R
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
H G V AL + +G ++ + D +++WD++K GH T+
Sbjct: 161 HDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV 206
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
H G V AL + +G ++ + D +++WD++K GH T+
Sbjct: 161 HDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV 206
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 148 CHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEV-LQTLPGH 191
H V+ L+F+P + ++AT D + +WDLR ++ L + H
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 316
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P G P
Sbjct: 251 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-YGSPE 309
Query: 258 F 258
F
Sbjct: 310 F 310
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P G P
Sbjct: 234 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-YGSPE 292
Query: 258 F 258
F
Sbjct: 293 F 293
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P G P
Sbjct: 235 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-YGSPE 293
Query: 258 F 258
F
Sbjct: 294 F 294
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P G P
Sbjct: 239 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-YGSPE 297
Query: 258 F 258
F
Sbjct: 298 F 298
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P G P
Sbjct: 239 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-YGSPE 297
Query: 258 F 258
F
Sbjct: 298 F 298
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P G P
Sbjct: 237 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-FGSPE 295
Query: 258 F 258
F
Sbjct: 296 F 296
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN 257
S K +G+ N+ ++G++ +G + VS+ + +V I H + +S +++P G P
Sbjct: 234 SFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVP-FGSPE 292
Query: 258 F 258
F
Sbjct: 293 F 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,486,370
Number of Sequences: 62578
Number of extensions: 501563
Number of successful extensions: 1543
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 314
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)