Query 046394
Match_columns 378
No_of_seqs 512 out of 3589
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 11:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1272 WD40-repeat-containing 100.0 6.8E-49 1.5E-53 333.3 17.8 358 1-365 85-517 (545)
2 KOG0271 Notchless-like WD40 re 100.0 4.8E-39 1E-43 267.3 21.0 233 15-249 127-478 (480)
3 KOG0286 G-protein beta subunit 100.0 2.6E-35 5.7E-40 237.1 25.7 234 15-261 67-342 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 2E-36 4.2E-41 254.7 18.2 233 15-248 187-456 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-35 4.1E-40 248.8 18.4 204 43-247 173-413 (459)
6 KOG0279 G protein beta subunit 100.0 2.1E-32 4.7E-37 219.0 24.8 238 8-249 29-310 (315)
7 KOG0271 Notchless-like WD40 re 100.0 1.9E-33 4.2E-38 234.0 17.3 228 36-265 106-440 (480)
8 KOG0284 Polyadenylation factor 100.0 6.4E-33 1.4E-37 232.7 13.0 235 15-249 108-377 (464)
9 KOG0273 Beta-transducin family 100.0 8.6E-31 1.9E-35 223.7 26.0 232 16-250 248-521 (524)
10 KOG0263 Transcription initiati 100.0 8.1E-32 1.8E-36 243.5 19.0 214 37-263 370-648 (707)
11 KOG0273 Beta-transducin family 100.0 2.7E-31 5.9E-36 226.7 20.9 203 46-250 236-480 (524)
12 KOG0279 G protein beta subunit 100.0 2E-29 4.3E-34 202.1 22.0 215 36-265 6-263 (315)
13 KOG0318 WD40 repeat stress pro 100.0 1.2E-28 2.6E-33 213.3 27.9 232 15-247 202-555 (603)
14 KOG0291 WD40-repeat-containing 100.0 4.7E-29 1E-33 224.2 25.2 226 25-250 330-610 (893)
15 KOG0295 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 209.6 18.3 226 20-246 125-400 (406)
16 KOG0318 WD40 repeat stress pro 100.0 3.5E-28 7.5E-33 210.5 27.2 245 10-255 24-353 (603)
17 KOG0265 U5 snRNP-specific prot 100.0 1.2E-28 2.6E-33 199.5 22.2 222 22-245 66-331 (338)
18 KOG0315 G-protein beta subunit 100.0 5.7E-28 1.2E-32 190.7 23.9 227 20-249 15-285 (311)
19 KOG0286 G-protein beta subunit 100.0 7.4E-28 1.6E-32 194.3 25.0 217 38-255 48-306 (343)
20 KOG0268 Sof1-like rRNA process 100.0 5.3E-30 1.1E-34 212.2 11.4 306 38-362 59-396 (433)
21 KOG0305 Anaphase promoting com 100.0 3.3E-28 7.2E-33 216.3 22.1 235 17-264 189-461 (484)
22 KOG0319 WD40-repeat-containing 100.0 2.6E-28 5.6E-33 219.0 21.1 236 11-247 70-572 (775)
23 KOG0263 Transcription initiati 100.0 1.8E-28 4E-33 221.9 20.2 176 30-205 436-635 (707)
24 KOG0306 WD40-repeat-containing 100.0 3.1E-27 6.8E-32 212.5 24.8 248 18-268 80-626 (888)
25 KOG0315 G-protein beta subunit 100.0 1.3E-26 2.9E-31 183.1 24.5 205 25-230 61-308 (311)
26 KOG0266 WD40 repeat-containing 100.0 5.7E-27 1.2E-31 216.2 25.2 223 18-241 174-441 (456)
27 cd00200 WD40 WD40 domain, foun 100.0 6.8E-26 1.5E-30 197.3 30.3 233 16-249 22-288 (289)
28 KOG0285 Pleiotropic regulator 100.0 2.7E-27 5.8E-32 196.0 19.4 214 37-252 143-389 (460)
29 KOG0316 Conserved WD40 repeat- 100.0 3.8E-27 8.2E-32 184.7 18.8 207 37-246 9-251 (307)
30 KOG0268 Sof1-like rRNA process 100.0 2.9E-28 6.2E-33 202.0 13.0 233 16-267 80-348 (433)
31 KOG0643 Translation initiation 100.0 9.4E-27 2E-31 185.7 20.5 234 16-250 23-315 (327)
32 KOG0645 WD40 repeat protein [G 100.0 3.2E-26 6.8E-31 183.0 22.9 230 9-249 29-308 (312)
33 KOG0645 WD40 repeat protein [G 100.0 1.5E-25 3.3E-30 179.2 25.5 215 36-252 5-261 (312)
34 KOG0285 Pleiotropic regulator 100.0 1.7E-26 3.6E-31 191.3 19.4 236 15-263 163-438 (460)
35 KOG0319 WD40-repeat-containing 99.9 1.2E-26 2.7E-31 208.3 19.8 232 16-249 337-616 (775)
36 KOG0292 Vesicle coat complex C 99.9 2.6E-26 5.5E-31 210.0 21.6 227 22-249 28-319 (1202)
37 KOG0291 WD40-repeat-containing 99.9 9.1E-26 2E-30 203.2 24.7 235 16-263 202-507 (893)
38 KOG0283 WD40 repeat-containing 99.9 1.5E-26 3.2E-31 211.2 19.2 219 31-250 252-574 (712)
39 KOG0276 Vesicle coat complex C 99.9 1.4E-26 3E-31 204.4 18.3 212 41-253 9-258 (794)
40 KOG2096 WD40 repeat protein [G 99.9 1.3E-26 2.9E-31 189.2 16.6 223 39-262 80-413 (420)
41 KOG0295 WD40 repeat-containing 99.9 4.8E-27 1E-31 194.8 14.2 212 37-249 100-361 (406)
42 KOG0306 WD40-repeat-containing 99.9 5.6E-26 1.2E-30 204.5 22.0 227 24-265 393-665 (888)
43 KOG0282 mRNA splicing factor [ 99.9 8.6E-27 1.9E-31 200.0 15.8 212 36-249 205-459 (503)
44 KOG0276 Vesicle coat complex C 99.9 4.6E-26 1E-30 201.2 20.7 225 23-248 33-295 (794)
45 PLN00181 protein SPA1-RELATED; 99.9 3.7E-25 8E-30 218.7 29.8 228 24-252 457-738 (793)
46 KOG0278 Serine/threonine kinas 99.9 5.2E-27 1.1E-31 185.5 12.9 215 38-266 7-299 (334)
47 KOG0296 Angio-associated migra 99.9 2.3E-25 5.1E-30 185.0 23.2 227 23-250 84-396 (399)
48 KOG0266 WD40 repeat-containing 99.9 2.4E-25 5.3E-30 205.4 25.7 212 39-251 152-408 (456)
49 KOG0275 Conserved WD40 repeat- 99.9 8.6E-27 1.9E-31 190.8 13.8 217 45-261 213-478 (508)
50 KOG1407 WD40 repeat protein [F 99.9 9.2E-26 2E-30 179.5 18.9 218 39-262 14-309 (313)
51 KOG0282 mRNA splicing factor [ 99.9 5.5E-27 1.2E-31 201.2 12.8 229 19-248 231-501 (503)
52 KOG0293 WD40 repeat-containing 99.9 2.4E-26 5.2E-31 193.7 15.9 217 37-265 216-514 (519)
53 cd00200 WD40 WD40 domain, foun 99.9 9.2E-25 2E-29 190.1 26.6 213 39-252 3-249 (289)
54 KOG0281 Beta-TrCP (transducin 99.9 2.7E-27 5.8E-32 195.4 9.3 229 15-264 207-477 (499)
55 KOG0265 U5 snRNP-specific prot 99.9 1.9E-25 4.1E-30 181.1 19.5 217 37-253 39-297 (338)
56 KOG0296 Angio-associated migra 99.9 7.4E-25 1.6E-29 182.0 22.3 152 37-188 56-228 (399)
57 KOG0277 Peroxisomal targeting 99.9 1.6E-25 3.5E-30 177.4 17.2 205 19-263 32-264 (311)
58 KOG0284 Polyadenylation factor 99.9 4.4E-27 9.6E-32 197.7 8.4 205 46-252 97-337 (464)
59 KOG0772 Uncharacterized conser 99.9 5.8E-25 1.3E-29 190.2 21.0 236 15-251 179-486 (641)
60 KOG0646 WD40 repeat protein [G 99.9 3.8E-25 8.2E-30 189.2 18.4 198 2-200 79-330 (476)
61 PLN00181 protein SPA1-RELATED; 99.9 1.2E-23 2.5E-28 208.1 30.4 216 16-249 546-790 (793)
62 KOG0316 Conserved WD40 repeat- 99.9 1.5E-24 3.3E-29 170.2 19.0 219 23-244 37-292 (307)
63 KOG0281 Beta-TrCP (transducin 99.9 4.5E-26 9.8E-31 188.2 8.6 200 45-265 197-429 (499)
64 PTZ00420 coronin; Provisional 99.9 3.9E-23 8.5E-28 191.2 29.0 199 24-251 53-292 (568)
65 KOG0274 Cdc4 and related F-box 99.9 9.9E-24 2.1E-28 194.5 24.9 235 15-266 218-484 (537)
66 KOG0313 Microtubule binding pr 99.9 3E-24 6.4E-29 179.3 19.3 208 42-264 102-376 (423)
67 KOG0313 Microtubule binding pr 99.9 2.7E-24 5.9E-29 179.5 18.9 203 18-263 162-417 (423)
68 PTZ00421 coronin; Provisional 99.9 5.4E-23 1.2E-27 189.3 29.3 143 40-182 70-247 (493)
69 KOG0294 WD40 repeat-containing 99.9 5.7E-24 1.2E-28 173.7 19.2 209 37-249 35-278 (362)
70 KOG0289 mRNA splicing factor [ 99.9 1.7E-23 3.6E-28 177.6 22.0 231 16-247 232-501 (506)
71 KOG0292 Vesicle coat complex C 99.9 1.6E-24 3.4E-29 198.4 16.8 139 42-180 6-165 (1202)
72 KOG0643 Translation initiation 99.9 6.7E-23 1.5E-27 163.8 23.0 207 39-248 4-257 (327)
73 KOG0640 mRNA cleavage stimulat 99.9 4.6E-24 1E-28 173.9 16.1 182 38-219 105-345 (430)
74 KOG0264 Nucleosome remodeling 99.9 2.3E-23 5E-28 177.9 19.7 215 22-263 144-403 (422)
75 KOG0973 Histone transcription 99.9 2E-23 4.3E-28 195.7 20.9 217 35-251 59-354 (942)
76 KOG0288 WD40 repeat protein Ti 99.9 3.2E-24 7E-29 180.8 13.5 231 16-249 188-458 (459)
77 KOG1274 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 187.3 22.2 212 42-253 10-263 (933)
78 KOG0310 Conserved WD40 repeat- 99.9 5.9E-23 1.3E-27 176.8 19.1 228 19-249 42-306 (487)
79 KOG0300 WD40 repeat-containing 99.9 4.1E-23 8.8E-28 169.0 15.9 233 20-264 165-476 (481)
80 KOG0973 Histone transcription 99.9 1.8E-22 3.9E-27 189.3 21.3 210 45-255 13-315 (942)
81 KOG1446 Histone H3 (Lys4) meth 99.9 2.4E-21 5.1E-26 158.7 24.7 210 41-251 10-261 (311)
82 KOG0641 WD40 repeat protein [G 99.9 2.4E-21 5.3E-26 151.4 23.1 242 7-264 44-349 (350)
83 KOG1446 Histone H3 (Lys4) meth 99.9 7.2E-21 1.6E-25 155.9 26.5 233 15-251 26-302 (311)
84 KOG0277 Peroxisomal targeting 99.9 6E-23 1.3E-27 162.9 13.8 201 16-245 74-302 (311)
85 KOG0310 Conserved WD40 repeat- 99.9 3.5E-22 7.5E-27 172.1 19.4 191 24-215 89-305 (487)
86 KOG1539 WD repeat protein [Gen 99.9 1.5E-21 3.2E-26 178.1 22.3 235 15-250 172-604 (910)
87 KOG0289 mRNA splicing factor [ 99.9 5.2E-22 1.1E-26 168.6 18.1 205 46-250 220-460 (506)
88 KOG0269 WD40 repeat-containing 99.9 2.7E-22 6E-27 181.5 16.6 198 48-246 90-334 (839)
89 KOG0647 mRNA export protein (c 99.9 2.8E-21 6.1E-26 157.1 19.8 215 24-242 49-313 (347)
90 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.7E-20 1.7E-24 161.1 30.9 228 19-250 5-277 (300)
91 PTZ00421 coronin; Provisional 99.9 2.9E-20 6.3E-25 171.3 29.1 191 16-206 89-320 (493)
92 KOG0299 U3 snoRNP-associated p 99.9 1.6E-21 3.4E-26 166.9 18.0 229 9-259 148-417 (479)
93 KOG0275 Conserved WD40 repeat- 99.9 1.7E-22 3.8E-27 165.7 11.7 231 17-249 227-506 (508)
94 KOG1332 Vesicle coat complex C 99.9 5.4E-22 1.2E-26 156.7 13.2 208 42-250 8-284 (299)
95 KOG0302 Ribosome Assembly prot 99.9 1.8E-21 3.9E-26 162.7 16.4 209 19-292 169-405 (440)
96 KOG0288 WD40 repeat protein Ti 99.9 9.4E-22 2E-26 166.1 14.7 191 18-209 234-451 (459)
97 KOG0308 Conserved WD40 repeat- 99.9 1.5E-21 3.4E-26 173.5 15.4 197 18-214 40-280 (735)
98 KOG1407 WD40 repeat protein [F 99.9 5.6E-20 1.2E-24 146.7 22.0 192 15-207 77-290 (313)
99 KOG0264 Nucleosome remodeling 99.9 1.2E-20 2.7E-25 161.3 17.5 179 42-249 121-344 (422)
100 PTZ00420 coronin; Provisional 99.9 3.8E-19 8.2E-24 164.9 27.1 190 16-205 88-322 (568)
101 KOG0646 WD40 repeat protein [G 99.9 3.8E-20 8.1E-25 158.8 18.3 228 25-254 18-309 (476)
102 KOG4283 Transcription-coupled 99.9 3.8E-20 8.2E-25 150.2 17.4 203 40-261 38-285 (397)
103 KOG1408 WD40 repeat protein [F 99.9 2.2E-20 4.8E-25 167.9 17.4 201 46-247 460-708 (1080)
104 KOG2055 WD40 repeat protein [G 99.9 5E-20 1.1E-24 157.8 18.6 240 2-249 221-509 (514)
105 KOG0772 Uncharacterized conser 99.9 2.4E-20 5.2E-25 161.8 16.6 207 36-242 158-429 (641)
106 KOG0294 WD40 repeat-containing 99.9 1E-19 2.2E-24 149.0 19.2 216 15-234 53-309 (362)
107 KOG0267 Microtubule severing p 99.8 2.8E-21 6E-26 173.8 9.9 187 21-207 46-256 (825)
108 KOG0274 Cdc4 and related F-box 99.8 1.4E-19 3.1E-24 167.1 21.4 201 12-217 258-490 (537)
109 KOG2106 Uncharacterized conser 99.8 6.1E-19 1.3E-23 152.8 23.7 223 22-249 177-474 (626)
110 KOG0278 Serine/threonine kinas 99.8 9.1E-21 2E-25 150.3 11.5 187 22-210 78-288 (334)
111 KOG1445 Tumor-specific antigen 99.8 9.3E-20 2E-24 162.0 18.6 123 23-145 148-285 (1012)
112 KOG2048 WD40 repeat protein [G 99.8 5.7E-19 1.2E-23 158.1 23.5 206 41-247 21-270 (691)
113 KOG0267 Microtubule severing p 99.8 2.9E-21 6.2E-26 173.8 8.7 215 24-245 13-261 (825)
114 KOG4283 Transcription-coupled 99.8 7.2E-20 1.6E-24 148.6 15.8 229 1-266 108-367 (397)
115 KOG0301 Phospholipase A2-activ 99.8 1.7E-19 3.6E-24 161.8 19.2 222 36-264 5-288 (745)
116 KOG0293 WD40 repeat-containing 99.8 2.4E-19 5.2E-24 151.7 18.4 208 4-217 233-510 (519)
117 KOG0283 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 166.4 17.3 175 38-214 362-571 (712)
118 KOG1332 Vesicle coat complex C 99.8 1.9E-19 4.2E-24 142.4 15.6 192 16-207 24-274 (299)
119 KOG0641 WD40 repeat protein [G 99.8 4.3E-18 9.3E-23 133.4 22.7 202 44-247 31-298 (350)
120 KOG1009 Chromatin assembly com 99.8 7.4E-19 1.6E-23 148.5 19.8 250 3-254 22-374 (434)
121 KOG0301 Phospholipase A2-activ 99.8 4.4E-19 9.4E-24 159.2 19.5 230 14-252 24-288 (745)
122 KOG0299 U3 snoRNP-associated p 99.8 5.6E-19 1.2E-23 151.4 17.7 159 22-182 221-412 (479)
123 KOG1036 Mitotic spindle checkp 99.8 1.7E-18 3.8E-23 141.5 19.2 196 17-243 67-295 (323)
124 KOG0639 Transducin-like enhanc 99.8 7.6E-20 1.6E-24 158.3 11.9 202 42-246 416-657 (705)
125 KOG1036 Mitotic spindle checkp 99.8 3.2E-18 6.9E-23 139.9 20.2 203 45-250 13-260 (323)
126 KOG2106 Uncharacterized conser 99.8 5.7E-18 1.2E-22 146.9 22.8 192 16-212 258-514 (626)
127 KOG1063 RNA polymerase II elon 99.8 2.9E-18 6.4E-23 153.9 20.9 239 7-249 206-645 (764)
128 KOG1273 WD40 repeat protein [G 99.8 3.7E-18 8E-23 140.0 19.3 231 18-250 38-320 (405)
129 KOG0639 Transducin-like enhanc 99.8 2E-18 4.3E-23 149.6 18.5 221 21-244 436-696 (705)
130 KOG0302 Ribosome Assembly prot 99.8 1.1E-18 2.5E-23 146.1 16.1 187 23-250 232-436 (440)
131 KOG0305 Anaphase promoting com 99.8 6.6E-19 1.4E-23 157.3 15.7 164 18-182 273-463 (484)
132 KOG0308 Conserved WD40 repeat- 99.8 4.4E-19 9.6E-24 158.0 13.7 196 50-246 29-279 (735)
133 KOG0650 WD40 repeat nucleolar 99.8 2.6E-18 5.6E-23 151.9 17.6 212 36-250 391-678 (733)
134 KOG0647 mRNA export protein (c 99.8 3E-18 6.4E-23 139.7 16.6 191 15-206 84-310 (347)
135 KOG2445 Nuclear pore complex c 99.8 1.2E-17 2.5E-22 136.6 19.9 104 42-145 10-137 (361)
136 KOG1539 WD repeat protein [Gen 99.8 4.7E-18 1E-22 155.6 19.1 187 16-203 412-631 (910)
137 KOG1524 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 151.3 15.1 226 15-246 25-280 (737)
138 KOG2055 WD40 repeat protein [G 99.8 5.6E-18 1.2E-22 145.4 18.0 197 46-243 214-456 (514)
139 KOG4378 Nuclear protein COP1 [ 99.8 4.5E-18 9.8E-23 147.3 16.5 228 19-249 6-277 (673)
140 KOG0269 WD40 repeat-containing 99.8 6.3E-19 1.4E-23 160.0 11.5 190 21-210 106-330 (839)
141 KOG0300 WD40 repeat-containing 99.8 3.8E-18 8.2E-23 140.1 14.5 174 78-265 140-387 (481)
142 KOG0303 Actin-binding protein 99.8 1.2E-17 2.5E-22 140.9 17.0 184 40-263 76-293 (472)
143 KOG0270 WD40 repeat-containing 99.8 3.4E-17 7.5E-22 140.0 19.4 157 47-203 175-387 (463)
144 KOG1274 WD40 repeat protein [G 99.8 8E-17 1.7E-21 149.2 22.0 225 15-246 25-294 (933)
145 KOG1587 Cytoplasmic dynein int 99.8 6.6E-17 1.4E-21 148.5 21.5 224 25-250 222-514 (555)
146 KOG4328 WD40 protein [Function 99.8 2.7E-17 5.8E-22 141.1 17.0 227 24-250 209-493 (498)
147 KOG4378 Nuclear protein COP1 [ 99.8 4.1E-17 8.8E-22 141.4 16.9 183 19-201 95-305 (673)
148 KOG1063 RNA polymerase II elon 99.8 3E-16 6.5E-21 141.2 22.2 238 14-253 23-392 (764)
149 KOG1273 WD40 repeat protein [G 99.8 1.6E-16 3.4E-21 130.5 18.7 195 48-244 26-271 (405)
150 KOG4328 WD40 protein [Function 99.8 3.9E-17 8.4E-22 140.2 15.7 196 30-251 171-398 (498)
151 KOG0307 Vesicle coat complex C 99.8 6E-18 1.3E-22 160.1 11.6 198 23-250 88-325 (1049)
152 KOG2919 Guanine nucleotide-bin 99.7 6.7E-16 1.5E-20 127.2 21.4 206 47-252 51-327 (406)
153 KOG0640 mRNA cleavage stimulat 99.7 1.6E-16 3.6E-21 130.1 16.0 214 37-250 164-424 (430)
154 KOG1538 Uncharacterized conser 99.7 1.4E-16 3.1E-21 142.7 16.8 232 10-249 20-290 (1081)
155 KOG1188 WD40 repeat protein [G 99.7 6.1E-16 1.3E-20 128.3 19.1 233 19-251 44-345 (376)
156 KOG2096 WD40 repeat protein [G 99.7 8.4E-17 1.8E-21 132.3 13.1 167 80-249 80-305 (420)
157 KOG2048 WD40 repeat protein [G 99.7 4.7E-15 1E-19 133.3 24.6 128 18-145 124-268 (691)
158 KOG0270 WD40 repeat-containing 99.7 4.8E-16 1E-20 133.1 16.4 187 42-256 240-453 (463)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.2E-14 4.7E-19 126.3 27.7 184 21-206 49-265 (300)
160 KOG0321 WD40 repeat-containing 99.7 1.6E-15 3.6E-20 135.3 17.8 242 8-250 56-389 (720)
161 KOG1445 Tumor-specific antigen 99.7 5.8E-16 1.3E-20 138.2 14.8 214 22-263 600-843 (1012)
162 KOG1034 Transcriptional repres 99.7 4E-15 8.6E-20 123.0 18.3 203 44-249 88-380 (385)
163 KOG2919 Guanine nucleotide-bin 99.7 2.6E-15 5.7E-20 123.8 17.2 193 22-244 130-362 (406)
164 KOG0322 G-protein beta subunit 99.7 6.2E-16 1.4E-20 124.0 12.5 205 14-249 24-320 (323)
165 KOG1538 Uncharacterized conser 99.7 2.2E-15 4.7E-20 135.3 16.8 199 47-249 14-249 (1081)
166 KOG1523 Actin-related protein 99.7 6.8E-15 1.5E-19 121.2 17.2 198 44-253 9-237 (361)
167 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-15 4E-20 133.2 14.6 197 17-244 308-553 (577)
168 KOG2445 Nuclear pore complex c 99.7 1.2E-14 2.6E-19 119.1 17.7 161 83-244 10-249 (361)
169 KOG1408 WD40 repeat protein [F 99.7 1.9E-15 4E-20 136.7 13.9 158 24-181 480-714 (1080)
170 KOG0644 Uncharacterized conser 99.6 6.8E-16 1.5E-20 141.6 10.5 243 15-259 202-475 (1113)
171 KOG0650 WD40 repeat nucleolar 99.6 5.2E-14 1.1E-18 125.0 21.0 232 15-249 412-732 (733)
172 KOG1188 WD40 repeat protein [G 99.6 4.4E-15 9.6E-20 123.3 13.3 162 58-219 41-241 (376)
173 KOG1034 Transcriptional repres 99.6 7.6E-15 1.6E-19 121.3 14.0 206 42-254 35-281 (385)
174 KOG1310 WD40 repeat protein [G 99.6 6E-15 1.3E-19 129.7 14.1 203 38-249 43-300 (758)
175 KOG0649 WD40 repeat protein [G 99.6 5.2E-14 1.1E-18 111.9 18.0 217 46-266 11-298 (325)
176 KOG2314 Translation initiation 99.6 5.3E-14 1.2E-18 124.0 19.4 284 47-359 212-648 (698)
177 KOG0290 Conserved WD40 repeat- 99.6 3.4E-14 7.4E-19 115.7 16.9 198 22-244 118-358 (364)
178 KOG1524 WD40 repeat-containing 99.6 1.3E-14 2.9E-19 127.2 15.1 185 16-213 76-280 (737)
179 PF08149 BING4CT: BING4CT (NUC 99.6 9.6E-16 2.1E-20 99.3 5.8 73 221-293 8-80 (80)
180 KOG0307 Vesicle coat complex C 99.6 1.1E-15 2.4E-20 144.9 8.0 178 46-250 65-282 (1049)
181 KOG0642 Cell-cycle nuclear pro 99.6 2.2E-14 4.7E-19 126.6 15.2 207 38-263 287-560 (577)
182 KOG0771 Prolactin regulatory e 99.6 1.7E-14 3.8E-19 123.0 14.1 171 49-249 148-351 (398)
183 KOG4227 WD40 repeat protein [G 99.6 4.6E-14 1E-18 119.4 16.4 227 39-266 50-405 (609)
184 PRK01742 tolB translocation pr 99.6 9.4E-14 2E-18 128.1 20.0 177 25-206 184-388 (429)
185 KOG0321 WD40 repeat-containing 99.6 3.1E-14 6.8E-19 127.3 15.7 203 49-252 53-347 (720)
186 PRK11028 6-phosphogluconolacto 99.6 4.6E-12 9.9E-17 113.2 29.5 226 22-249 9-301 (330)
187 KOG4497 Uncharacterized conser 99.6 4.5E-15 9.7E-20 122.8 8.9 197 50-249 13-237 (447)
188 KOG2110 Uncharacterized conser 99.6 1.5E-12 3.3E-17 109.5 23.9 193 27-250 28-246 (391)
189 KOG1963 WD40 repeat protein [G 99.6 6.3E-13 1.4E-17 123.3 23.0 236 15-250 27-373 (792)
190 KOG2110 Uncharacterized conser 99.6 1.5E-12 3.3E-17 109.5 22.9 227 19-250 62-328 (391)
191 KOG2394 WD40 protein DMR-N9 [G 99.6 1.5E-13 3.3E-18 120.7 17.4 185 15-199 134-384 (636)
192 KOG1517 Guanine nucleotide bin 99.6 3E-13 6.6E-18 127.6 19.7 230 21-250 1082-1379(1387)
193 KOG2321 WD40 repeat protein [G 99.6 7.8E-13 1.7E-17 117.2 20.9 206 44-251 50-343 (703)
194 PRK04922 tolB translocation pr 99.6 4.2E-13 9.2E-18 124.0 20.4 179 25-206 184-395 (433)
195 KOG2111 Uncharacterized conser 99.6 2.9E-12 6.2E-17 105.9 22.1 202 18-250 19-254 (346)
196 KOG0290 Conserved WD40 repeat- 99.5 2.1E-13 4.5E-18 111.2 14.4 177 43-249 94-315 (364)
197 KOG4497 Uncharacterized conser 99.5 7.2E-12 1.6E-16 104.0 23.5 228 20-250 66-430 (447)
198 KOG1009 Chromatin assembly com 99.5 1.3E-13 2.8E-18 117.2 13.5 89 115-203 58-179 (434)
199 PRK02889 tolB translocation pr 99.5 1.2E-12 2.5E-17 120.7 20.5 181 25-207 176-388 (427)
200 KOG1007 WD repeat protein TSSC 99.5 1.5E-13 3.3E-18 111.9 12.5 160 37-253 114-290 (370)
201 PRK03629 tolB translocation pr 99.5 3.2E-12 6.9E-17 117.8 22.4 179 26-207 180-391 (429)
202 COG2319 FOG: WD40 repeat [Gene 99.5 3.2E-11 7E-16 110.8 29.4 173 24-197 133-336 (466)
203 KOG2139 WD40 repeat protein [G 99.5 1.2E-12 2.6E-17 109.9 17.1 196 47-244 100-367 (445)
204 KOG1007 WD repeat protein TSSC 99.5 5.6E-13 1.2E-17 108.6 14.5 164 15-180 135-361 (370)
205 KOG0303 Actin-binding protein 99.5 2.9E-12 6.4E-17 108.7 18.9 199 2-202 89-322 (472)
206 PRK05137 tolB translocation pr 99.5 5E-12 1.1E-16 117.1 22.5 176 26-204 183-391 (435)
207 KOG1963 WD40 repeat protein [G 99.5 1.5E-11 3.3E-16 114.2 25.0 235 16-251 172-486 (792)
208 KOG2139 WD40 repeat protein [G 99.5 1.7E-11 3.7E-16 103.1 22.5 225 21-249 116-428 (445)
209 COG2319 FOG: WD40 repeat [Gene 99.5 4.4E-11 9.5E-16 109.9 28.1 209 40-249 60-311 (466)
210 KOG0644 Uncharacterized conser 99.5 7.7E-15 1.7E-19 134.8 1.0 211 36-251 181-425 (1113)
211 PF02239 Cytochrom_D1: Cytochr 99.5 4.1E-10 8.9E-15 100.9 30.4 218 21-240 12-286 (369)
212 KOG3881 Uncharacterized conser 99.5 9.8E-12 2.1E-16 105.5 17.8 163 22-186 122-326 (412)
213 PF08662 eIF2A: Eukaryotic tra 99.4 1.8E-12 3.8E-17 105.6 13.1 108 149-266 58-181 (194)
214 KOG0771 Prolactin regulatory e 99.4 1.3E-12 2.8E-17 111.8 12.4 163 17-180 158-354 (398)
215 KOG1523 Actin-related protein 99.4 1.8E-11 3.9E-16 101.3 18.2 160 22-181 29-237 (361)
216 KOG1240 Protein kinase contain 99.4 2.6E-11 5.7E-16 116.4 20.8 230 30-265 1034-1335(1431)
217 KOG3881 Uncharacterized conser 99.4 9.1E-11 2E-15 99.7 21.4 186 44-251 104-319 (412)
218 PRK01742 tolB translocation pr 99.4 2.6E-11 5.5E-16 112.0 19.4 168 25-199 228-425 (429)
219 PF08662 eIF2A: Eukaryotic tra 99.4 4.4E-11 9.6E-16 97.4 17.5 58 150-207 100-161 (194)
220 KOG0649 WD40 repeat protein [G 99.4 2.3E-10 4.9E-15 91.4 19.2 132 47-200 116-257 (325)
221 TIGR02800 propeller_TolB tol-p 99.4 2.1E-10 4.6E-15 106.1 22.2 180 26-207 171-382 (417)
222 KOG2111 Uncharacterized conser 99.3 1.5E-09 3.3E-14 90.1 23.8 155 24-182 74-258 (346)
223 KOG2394 WD40 protein DMR-N9 [G 99.3 1.6E-11 3.5E-16 108.2 12.8 40 121-160 331-384 (636)
224 PRK11028 6-phosphogluconolacto 99.3 1.2E-09 2.5E-14 97.7 24.2 184 22-206 54-290 (330)
225 PRK04792 tolB translocation pr 99.3 9E-10 1.9E-14 102.0 23.3 179 26-206 199-409 (448)
226 KOG0322 G-protein beta subunit 99.3 1.2E-11 2.5E-16 99.8 9.3 132 20-179 170-322 (323)
227 PRK05137 tolB translocation pr 99.3 4.4E-10 9.5E-15 104.1 21.1 174 68-242 183-396 (435)
228 PRK00178 tolB translocation pr 99.3 7.7E-10 1.7E-14 102.6 22.2 179 26-207 180-391 (430)
229 KOG2315 Predicted translation 99.3 6.6E-10 1.4E-14 98.8 20.1 244 8-264 38-390 (566)
230 PRK02889 tolB translocation pr 99.3 6.1E-10 1.3E-14 102.8 20.5 177 67-244 176-392 (427)
231 KOG1587 Cytoplasmic dynein int 99.3 3.4E-10 7.3E-15 104.8 18.1 192 16-207 256-504 (555)
232 KOG1334 WD40 repeat protein [G 99.3 1.2E-11 2.6E-16 107.7 8.0 165 38-202 135-349 (559)
233 PRK03629 tolB translocation pr 99.3 1.2E-09 2.5E-14 100.9 21.7 177 68-245 180-396 (429)
234 PF15492 Nbas_N: Neuroblastoma 99.3 5.1E-09 1.1E-13 86.2 22.4 176 13-188 6-267 (282)
235 KOG4547 WD40 repeat-containing 99.3 5.3E-10 1.1E-14 100.0 17.7 152 55-233 3-195 (541)
236 KOG1240 Protein kinase contain 99.2 2.7E-10 5.9E-15 109.7 16.2 192 72-263 1034-1284(1431)
237 KOG0280 Uncharacterized conser 99.2 3.4E-09 7.4E-14 87.1 18.8 167 48-241 124-320 (339)
238 PRK01029 tolB translocation pr 99.2 1E-08 2.2E-13 94.4 24.2 180 26-206 166-387 (428)
239 PRK04922 tolB translocation pr 99.2 4.6E-09 1E-13 97.3 21.2 172 25-199 228-432 (433)
240 KOG3914 WD repeat protein WDR4 99.2 3.7E-10 8E-15 96.5 11.6 140 47-188 64-231 (390)
241 KOG1517 Guanine nucleotide bin 99.2 8.6E-10 1.9E-14 104.8 15.0 159 24-182 1186-1383(1387)
242 PF02239 Cytochrom_D1: Cytochr 99.2 8.5E-09 1.9E-13 92.5 20.9 222 15-237 48-330 (369)
243 PF10282 Lactonase: Lactonase, 99.1 3.8E-07 8.2E-12 81.9 30.9 224 25-250 13-320 (345)
244 COG5354 Uncharacterized protei 99.1 3.2E-08 7E-13 87.3 21.6 106 148-263 272-394 (561)
245 KOG1354 Serine/threonine prote 99.1 1.6E-09 3.4E-14 90.9 12.6 204 46-250 26-357 (433)
246 KOG1310 WD40 repeat protein [G 99.1 2.4E-09 5.1E-14 95.1 13.5 174 15-188 62-311 (758)
247 KOG4227 WD40 repeat protein [G 99.1 4E-09 8.7E-14 89.9 14.4 139 5-145 66-218 (609)
248 TIGR02800 propeller_TolB tol-p 99.1 2.6E-08 5.6E-13 92.2 21.1 176 68-244 171-386 (417)
249 KOG2321 WD40 repeat protein [G 99.1 3.6E-09 7.9E-14 94.4 13.8 162 18-207 148-331 (703)
250 TIGR02658 TTQ_MADH_Hv methylam 99.1 8.5E-07 1.8E-11 78.1 28.4 224 25-253 27-331 (352)
251 KOG0974 WD-repeat protein WDR6 99.0 1.2E-08 2.7E-13 97.0 17.0 159 56-244 98-280 (967)
252 KOG1064 RAVE (regulator of V-A 99.0 1.3E-09 2.8E-14 108.8 10.7 175 18-219 2223-2408(2439)
253 KOG1272 WD40-repeat-containing 99.0 1.1E-09 2.4E-14 95.2 8.0 153 20-173 226-402 (545)
254 KOG2315 Predicted translation 99.0 1.2E-07 2.7E-12 84.6 20.7 182 24-207 145-372 (566)
255 COG2706 3-carboxymuconate cycl 99.0 1.3E-06 2.8E-11 74.4 25.9 221 24-245 15-313 (346)
256 KOG0974 WD-repeat protein WDR6 99.0 7.8E-09 1.7E-13 98.3 13.8 163 17-181 101-289 (967)
257 PRK00178 tolB translocation pr 99.0 1.4E-07 3E-12 87.6 21.6 175 68-243 180-394 (430)
258 KOG4532 WD40-like repeat conta 99.0 7.5E-08 1.6E-12 78.4 16.9 154 50-203 72-264 (344)
259 PRK04792 tolB translocation pr 99.0 1.4E-07 3E-12 87.6 20.9 172 25-199 242-446 (448)
260 PRK01029 tolB translocation pr 99.0 2.3E-07 4.9E-12 85.5 22.0 176 25-201 211-426 (428)
261 PF04762 IKI3: IKI3 family; I 98.9 1E-06 2.2E-11 88.0 27.2 231 17-250 89-454 (928)
262 TIGR02658 TTQ_MADH_Hv methylam 98.9 3.6E-06 7.8E-11 74.3 26.9 183 23-206 75-315 (352)
263 PF10282 Lactonase: Lactonase, 98.9 8.4E-06 1.8E-10 73.2 29.4 200 7-206 39-308 (345)
264 KOG2695 WD40 repeat protein [G 98.9 1.3E-08 2.8E-13 85.6 9.4 140 21-188 230-384 (425)
265 PRK04043 tolB translocation pr 98.9 1.5E-06 3.2E-11 79.7 23.4 114 26-142 170-296 (419)
266 KOG4547 WD40 repeat-containing 98.9 2.9E-07 6.4E-12 82.8 18.0 166 16-181 6-221 (541)
267 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.4E-13 59.8 5.9 39 35-73 1-39 (39)
268 PLN02919 haloacid dehalogenase 98.8 1.3E-05 2.7E-10 81.8 31.0 92 22-114 587-717 (1057)
269 COG4946 Uncharacterized protei 98.8 1.3E-05 2.8E-10 70.8 25.6 185 15-202 277-501 (668)
270 PRK04043 tolB translocation pr 98.8 3E-06 6.4E-11 77.7 23.1 176 67-244 169-389 (419)
271 KOG1912 WD40 repeat protein [G 98.8 1.6E-07 3.5E-12 87.1 14.6 126 15-140 25-174 (1062)
272 PF07433 DUF1513: Protein of u 98.8 5.8E-06 1.3E-10 70.5 21.9 180 22-201 25-269 (305)
273 KOG2041 WD40 repeat protein [G 98.7 1E-07 2.2E-12 87.7 11.1 196 46-244 15-280 (1189)
274 KOG4190 Uncharacterized conser 98.7 6.9E-08 1.5E-12 86.2 9.8 146 18-188 750-914 (1034)
275 KOG0309 Conserved WD40 repeat- 98.7 5.6E-08 1.2E-12 89.5 9.5 216 47-265 69-340 (1081)
276 TIGR03300 assembly_YfgL outer 98.7 1.9E-05 4.1E-10 72.0 25.9 231 15-251 65-337 (377)
277 KOG1409 Uncharacterized conser 98.7 8.9E-08 1.9E-12 80.6 9.5 80 32-111 184-271 (404)
278 KOG2066 Vacuolar assembly/sort 98.7 4.4E-07 9.5E-12 84.7 14.8 150 46-203 40-219 (846)
279 PF00400 WD40: WD domain, G-be 98.7 5.8E-08 1.3E-12 56.6 5.8 32 147-178 8-39 (39)
280 KOG1832 HIV-1 Vpr-binding prot 98.7 1.5E-08 3.3E-13 95.0 4.7 175 15-203 1113-1315(1516)
281 KOG1409 Uncharacterized conser 98.7 5.5E-07 1.2E-11 75.9 13.3 183 38-249 17-267 (404)
282 KOG4532 WD40-like repeat conta 98.7 1.3E-06 2.8E-11 71.4 14.8 143 22-187 135-289 (344)
283 COG2706 3-carboxymuconate cycl 98.6 2.8E-05 6.1E-10 66.5 22.0 177 66-242 15-263 (346)
284 PF04762 IKI3: IKI3 family; I 98.6 7.8E-06 1.7E-10 81.8 21.5 160 88-250 78-331 (928)
285 KOG1275 PAB-dependent poly(A) 98.6 9.5E-07 2.1E-11 83.5 13.6 163 57-250 147-340 (1118)
286 KOG1354 Serine/threonine prote 98.6 2.7E-06 5.9E-11 71.9 14.9 195 43-244 162-427 (433)
287 KOG1334 WD40 repeat protein [G 98.6 4.3E-07 9.4E-12 79.9 10.5 177 80-256 136-370 (559)
288 PLN02919 haloacid dehalogenase 98.6 2.8E-05 6E-10 79.4 25.1 138 47-184 684-892 (1057)
289 COG4946 Uncharacterized protei 98.6 1.1E-05 2.4E-10 71.2 19.1 182 54-240 275-506 (668)
290 KOG1064 RAVE (regulator of V-A 98.6 6.5E-07 1.4E-11 90.3 12.8 142 94-266 2222-2400(2439)
291 KOG0280 Uncharacterized conser 98.6 8.7E-07 1.9E-11 73.2 11.3 164 18-182 136-335 (339)
292 PF08450 SGL: SMP-30/Gluconola 98.6 7.4E-05 1.6E-09 63.7 23.8 185 50-237 4-240 (246)
293 COG5354 Uncharacterized protei 98.5 1.4E-05 3.1E-10 71.1 18.5 142 102-244 255-421 (561)
294 PF15492 Nbas_N: Neuroblastoma 98.5 0.00017 3.6E-09 60.1 22.5 196 51-250 3-257 (282)
295 KOG4714 Nucleoporin [Nuclear s 98.5 3.1E-06 6.7E-11 68.9 12.2 143 39-181 83-255 (319)
296 KOG0882 Cyclophilin-related pe 98.5 6.7E-07 1.5E-11 78.1 9.0 253 16-268 21-329 (558)
297 KOG1275 PAB-dependent poly(A) 98.5 3E-06 6.5E-11 80.3 13.1 152 24-178 156-340 (1118)
298 TIGR03300 assembly_YfgL outer 98.4 0.00013 2.8E-09 66.6 23.3 227 15-246 105-373 (377)
299 COG5170 CDC55 Serine/threonine 98.4 7.5E-07 1.6E-11 74.2 7.5 133 46-180 27-201 (460)
300 PF13360 PQQ_2: PQQ-like domai 98.4 0.00033 7.2E-09 59.3 23.8 139 24-188 2-148 (238)
301 PF13360 PQQ_2: PQQ-like domai 98.4 0.00041 8.8E-09 58.8 23.5 170 15-187 36-237 (238)
302 KOG2114 Vacuolar assembly/sort 98.4 4.6E-05 1E-09 72.1 18.2 151 52-202 30-227 (933)
303 KOG3914 WD repeat protein WDR4 98.4 1.6E-06 3.5E-11 74.7 8.0 94 25-119 132-232 (390)
304 KOG4190 Uncharacterized conser 98.3 1.4E-06 3E-11 78.1 7.3 173 38-262 728-915 (1034)
305 KOG2041 WD40 repeat protein [G 98.3 1.3E-05 2.9E-10 74.2 13.3 202 38-241 64-327 (1189)
306 KOG0309 Conserved WD40 repeat- 98.3 3.1E-06 6.6E-11 78.5 9.2 190 30-249 10-229 (1081)
307 KOG3617 WD40 and TPR repeat-co 98.3 2.8E-05 6.2E-10 73.4 15.1 219 46-265 16-350 (1416)
308 KOG2314 Translation initiation 98.3 9.4E-06 2E-10 72.9 11.0 136 104-241 192-365 (698)
309 KOG1920 IkappaB kinase complex 98.3 0.00059 1.3E-08 67.4 23.6 164 18-183 83-325 (1265)
310 PF06977 SdiA-regulated: SdiA- 98.2 0.0003 6.5E-09 59.2 18.7 148 40-188 16-208 (248)
311 PF08450 SGL: SMP-30/Gluconola 98.2 0.0027 5.8E-08 54.1 26.0 167 24-198 21-233 (246)
312 PRK11138 outer membrane biogen 98.2 0.0014 3.1E-08 60.1 24.1 172 15-188 69-282 (394)
313 KOG1912 WD40 repeat protein [G 98.2 0.00026 5.7E-09 66.5 18.5 230 15-244 125-543 (1062)
314 KOG1832 HIV-1 Vpr-binding prot 98.1 2.9E-06 6.2E-11 80.3 4.9 138 79-216 1094-1262(1516)
315 PF07433 DUF1513: Protein of u 98.1 0.006 1.3E-07 52.4 24.1 170 48-219 7-246 (305)
316 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0047 1E-07 51.0 21.7 122 15-138 23-152 (354)
317 KOG1645 RING-finger-containing 98.0 0.00012 2.5E-09 63.6 12.6 86 27-112 175-268 (463)
318 PF08553 VID27: VID27 cytoplas 98.0 0.00028 6E-09 68.5 16.6 118 24-142 503-638 (794)
319 KOG1920 IkappaB kinase complex 98.0 0.00073 1.6E-08 66.8 19.1 162 88-252 71-322 (1265)
320 PRK11138 outer membrane biogen 98.0 0.0019 4.2E-08 59.3 21.4 171 15-188 120-320 (394)
321 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0019 4.2E-08 59.2 21.1 43 68-110 62-109 (410)
322 PF11768 DUF3312: Protein of u 98.0 0.00028 6.1E-09 64.5 15.2 75 148-254 257-331 (545)
323 KOG3621 WD40 repeat-containing 98.0 0.00081 1.8E-08 62.7 17.8 100 46-145 34-147 (726)
324 PRK02888 nitrous-oxide reducta 98.0 0.0016 3.5E-08 61.2 19.4 148 24-181 214-405 (635)
325 KOG4714 Nucleoporin [Nuclear s 98.0 7.9E-05 1.7E-09 60.9 9.4 87 25-111 159-255 (319)
326 COG0823 TolB Periplasmic compo 98.0 0.00028 6.1E-09 64.6 14.2 153 27-183 175-361 (425)
327 KOG0882 Cyclophilin-related pe 97.9 0.00012 2.7E-09 64.3 11.0 197 44-256 8-235 (558)
328 PF04053 Coatomer_WDAD: Coatom 97.9 0.0012 2.7E-08 60.6 18.1 126 41-203 28-158 (443)
329 cd00216 PQQ_DH Dehydrogenases 97.9 0.011 2.4E-07 55.9 23.7 172 16-188 62-327 (488)
330 PF11768 DUF3312: Protein of u 97.8 0.00066 1.4E-08 62.2 14.5 70 44-113 258-332 (545)
331 smart00320 WD40 WD40 repeats. 97.8 6.7E-05 1.5E-09 42.5 5.6 38 36-73 3-40 (40)
332 KOG2695 WD40 repeat protein [G 97.8 9.7E-05 2.1E-09 62.9 8.2 104 18-121 267-387 (425)
333 KOG2395 Protein involved in va 97.8 0.0003 6.5E-09 63.4 11.1 140 2-179 340-499 (644)
334 COG5170 CDC55 Serine/threonine 97.8 0.0007 1.5E-08 57.0 12.0 128 43-188 170-318 (460)
335 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0019 4.2E-08 46.3 12.1 61 48-109 2-70 (111)
336 KOG3617 WD40 and TPR repeat-co 97.7 0.0015 3.3E-08 62.3 14.6 54 21-74 77-130 (1416)
337 COG0823 TolB Periplasmic compo 97.6 0.0022 4.7E-08 58.8 14.8 154 102-256 218-403 (425)
338 PF06433 Me-amine-dh_H: Methyl 97.6 0.036 7.8E-07 48.4 22.8 101 15-116 57-172 (342)
339 PF03178 CPSF_A: CPSF A subuni 97.6 0.028 6.1E-07 50.0 21.5 153 26-180 3-202 (321)
340 PF04053 Coatomer_WDAD: Coatom 97.6 0.019 4.2E-07 52.9 20.1 161 10-210 38-215 (443)
341 smart00320 WD40 WD40 repeats. 97.5 0.00022 4.8E-09 40.3 4.6 31 148-178 10-40 (40)
342 KOG2066 Vacuolar assembly/sort 97.4 0.0081 1.7E-07 57.2 14.8 120 16-138 84-221 (846)
343 PF08553 VID27: VID27 cytoplas 97.3 0.0096 2.1E-07 58.2 14.7 56 149-206 576-635 (794)
344 KOG4640 Anaphase-promoting com 97.3 0.00096 2.1E-08 61.5 7.4 77 123-199 21-115 (665)
345 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.059 1.3E-06 48.6 18.8 64 14-79 12-75 (353)
346 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0012 2.7E-08 39.5 4.9 34 46-79 12-45 (47)
347 PF08596 Lgl_C: Lethal giant l 97.2 0.016 3.4E-07 52.7 14.3 72 38-110 79-173 (395)
348 PRK02888 nitrous-oxide reducta 97.1 0.045 9.8E-07 51.8 16.8 152 23-181 294-486 (635)
349 KOG2395 Protein involved in va 97.1 0.02 4.4E-07 52.1 13.8 113 94-209 348-491 (644)
350 COG3391 Uncharacterized conser 97.0 0.25 5.4E-06 45.1 23.2 186 15-201 85-310 (381)
351 KOG2114 Vacuolar assembly/sort 96.9 0.14 3E-06 49.7 18.4 152 26-177 93-270 (933)
352 TIGR03074 PQQ_membr_DH membran 96.9 0.44 9.4E-06 47.4 22.3 174 15-188 194-485 (764)
353 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0043 9.4E-08 37.2 5.3 34 150-184 11-44 (47)
354 COG3386 Gluconolactonase [Carb 96.9 0.16 3.5E-06 44.5 17.2 41 102-143 143-183 (307)
355 PF06433 Me-amine-dh_H: Methyl 96.8 0.3 6.5E-06 42.9 20.3 168 18-188 111-328 (342)
356 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.11 2.4E-06 37.4 13.0 87 14-105 14-109 (111)
357 KOG1645 RING-finger-containing 96.7 0.057 1.2E-06 47.5 13.2 66 89-183 197-269 (463)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.41 8.9E-06 45.7 20.3 169 16-186 70-339 (527)
359 KOG2280 Vacuolar assembly/sort 96.7 0.1 2.2E-06 49.8 15.1 52 150-201 216-271 (829)
360 PF14583 Pectate_lyase22: Olig 96.7 0.46 9.9E-06 42.6 21.8 182 25-206 10-254 (386)
361 PF14583 Pectate_lyase22: Olig 96.6 0.46 1E-05 42.5 20.7 179 24-203 59-296 (386)
362 PF00930 DPPIV_N: Dipeptidyl p 96.6 0.12 2.7E-06 46.6 15.5 144 54-202 1-196 (353)
363 KOG3621 WD40 repeat-containing 96.6 0.0096 2.1E-07 55.9 8.0 88 94-181 47-155 (726)
364 cd00216 PQQ_DH Dehydrogenases 96.6 0.47 1E-05 44.9 19.5 96 24-119 174-328 (488)
365 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.2 4.2E-06 45.8 15.9 38 151-188 308-345 (415)
366 KOG4640 Anaphase-promoting com 96.5 0.018 3.9E-07 53.5 9.1 86 46-131 21-114 (665)
367 KOG4499 Ca2+-binding protein R 96.5 0.28 6E-06 40.3 14.7 126 47-198 110-262 (310)
368 PRK13616 lipoprotein LpqB; Pro 96.5 0.56 1.2E-05 45.3 19.3 33 46-78 350-390 (591)
369 COG3490 Uncharacterized protei 96.4 0.29 6.4E-06 41.4 14.9 163 24-186 90-316 (366)
370 PF08596 Lgl_C: Lethal giant l 96.4 0.72 1.6E-05 42.1 22.5 201 47-247 3-331 (395)
371 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.46 9.9E-06 39.7 21.4 89 57-145 23-116 (354)
372 PF10647 Gmad1: Lipoprotein Lp 96.4 0.32 7E-06 41.5 15.7 94 47-141 25-130 (253)
373 KOG1008 Uncharacterized conser 96.4 0.0023 5E-08 59.2 2.7 155 46-201 57-255 (783)
374 PF10647 Gmad1: Lipoprotein Lp 96.3 0.16 3.4E-06 43.4 13.1 120 124-244 25-187 (253)
375 COG3386 Gluconolactonase [Carb 96.2 0.77 1.7E-05 40.3 22.1 129 50-180 29-193 (307)
376 KOG2079 Vacuolar assembly/sort 96.1 0.055 1.2E-06 53.6 10.5 89 57-145 99-198 (1206)
377 COG3490 Uncharacterized protei 96.1 0.76 1.6E-05 39.0 16.4 109 95-203 83-239 (366)
378 KOG2444 WD40 repeat protein [G 96.1 0.024 5.2E-07 46.1 6.6 62 57-118 70-140 (238)
379 PRK13616 lipoprotein LpqB; Pro 96.1 0.14 3.1E-06 49.3 13.0 81 123-203 350-461 (591)
380 COG3204 Uncharacterized protei 96.0 0.86 1.9E-05 38.9 17.4 100 43-142 83-200 (316)
381 COG3391 Uncharacterized conser 96.0 1.2 2.6E-05 40.7 23.0 157 46-203 74-266 (381)
382 PF10168 Nup88: Nuclear pore c 95.9 0.15 3.3E-06 50.0 12.8 33 149-181 145-180 (717)
383 KOG2079 Vacuolar assembly/sort 95.8 0.11 2.4E-06 51.6 11.1 63 45-109 130-202 (1206)
384 COG5167 VID27 Protein involved 95.7 0.16 3.5E-06 46.4 10.9 125 25-180 490-632 (776)
385 PF14870 PSII_BNR: Photosynthe 95.7 1.4 3E-05 38.6 17.8 132 45-177 144-301 (302)
386 KOG4441 Proteins containing BT 95.5 1.1 2.3E-05 43.4 16.6 88 25-113 301-407 (571)
387 PF10313 DUF2415: Uncharacteri 95.4 0.071 1.5E-06 31.0 5.1 31 151-181 1-34 (43)
388 PF15390 DUF4613: Domain of un 95.3 0.84 1.8E-05 42.8 14.2 128 47-180 21-186 (671)
389 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 2.8 6.1E-05 40.1 18.4 92 24-115 180-338 (527)
390 PF06977 SdiA-regulated: SdiA- 95.1 1.8 3.8E-05 36.8 20.5 152 88-241 24-240 (248)
391 PF00780 CNH: CNH domain; Int 94.9 2.2 4.8E-05 36.9 19.7 161 23-188 54-263 (275)
392 PF03178 CPSF_A: CPSF A subuni 94.9 2.6 5.7E-05 37.4 18.5 98 148-250 86-200 (321)
393 PF05096 Glu_cyclase_2: Glutam 94.9 2.1 4.6E-05 36.4 15.7 101 16-119 100-212 (264)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 94.8 0.53 1.2E-05 43.0 11.6 83 38-120 300-408 (415)
395 PF14870 PSII_BNR: Photosynthe 94.8 2.6 5.5E-05 37.0 21.4 201 46-254 17-261 (302)
396 COG5167 VID27 Protein involved 94.7 0.96 2.1E-05 41.7 12.7 111 94-206 482-620 (776)
397 PHA02713 hypothetical protein; 94.5 0.99 2.1E-05 43.5 13.4 23 56-78 351-378 (557)
398 KOG1900 Nuclear pore complex, 94.4 1.2 2.7E-05 45.7 13.9 62 120-181 176-273 (1311)
399 PF05694 SBP56: 56kDa selenium 94.4 1.4 3.1E-05 40.0 12.9 81 101-181 221-343 (461)
400 KOG4441 Proteins containing BT 94.4 1.2 2.5E-05 43.1 13.5 120 25-145 349-487 (571)
401 KOG2444 WD40 repeat protein [G 94.2 0.19 4.1E-06 41.1 6.6 80 7-86 62-144 (238)
402 KOG3630 Nuclear pore complex, 94.2 0.41 8.8E-06 48.2 9.9 121 46-167 101-260 (1405)
403 PF12234 Rav1p_C: RAVE protein 94.1 2.3 5E-05 41.1 14.6 115 46-179 30-155 (631)
404 PF15390 DUF4613: Domain of un 94.0 1.5 3.2E-05 41.3 12.4 121 123-245 20-178 (671)
405 PF02897 Peptidase_S9_N: Proly 94.0 0.5 1.1E-05 43.7 10.0 53 154-206 127-186 (414)
406 KOG1008 Uncharacterized conser 93.8 0.019 4.2E-07 53.4 0.4 134 22-180 126-275 (783)
407 PF04841 Vps16_N: Vps16, N-ter 93.3 6.8 0.00015 36.2 21.0 175 26-202 62-272 (410)
408 KOG1916 Nuclear protein, conta 93.2 0.074 1.6E-06 51.8 3.0 119 42-180 129-265 (1283)
409 PF08728 CRT10: CRT10; InterP 93.2 5.9 0.00013 38.8 15.5 85 94-179 116-245 (717)
410 PF07569 Hira: TUP1-like enhan 93.1 0.59 1.3E-05 38.9 8.0 72 2-75 10-95 (219)
411 PF07995 GSDH: Glucose / Sorbo 93.1 6.3 0.00014 35.3 19.7 31 47-78 3-33 (331)
412 KOG2247 WD40 repeat-containing 93.0 0.0069 1.5E-07 54.6 -3.7 128 46-175 35-183 (615)
413 PF10313 DUF2415: Uncharacteri 92.9 0.35 7.5E-06 28.1 4.4 30 46-75 1-33 (43)
414 KOG4460 Nuclear pore complex, 92.8 3.4 7.3E-05 38.4 12.5 60 121-188 144-206 (741)
415 PF00780 CNH: CNH domain; Int 92.7 6 0.00013 34.1 16.8 58 55-114 5-68 (275)
416 TIGR02276 beta_rpt_yvtn 40-res 92.7 0.79 1.7E-05 26.3 6.0 38 160-197 1-41 (42)
417 KOG2377 Uncharacterized conser 92.4 4.4 9.5E-05 37.0 12.6 89 149-238 65-169 (657)
418 TIGR03118 PEPCTERM_chp_1 conse 92.2 7.1 0.00015 33.9 16.7 155 7-188 88-287 (336)
419 PF05096 Glu_cyclase_2: Glutam 92.1 7 0.00015 33.3 21.9 109 49-188 48-165 (264)
420 PRK13684 Ycf48-like protein; P 91.8 9.2 0.0002 34.2 18.3 131 46-178 173-329 (334)
421 PF02897 Peptidase_S9_N: Proly 91.6 11 0.00024 34.8 23.0 86 25-112 150-262 (414)
422 KOG3630 Nuclear pore complex, 91.2 2.7 5.9E-05 42.7 10.9 106 94-200 116-254 (1405)
423 PHA03098 kelch-like protein; P 91.0 8.8 0.00019 36.9 14.5 59 56-114 342-418 (534)
424 KOG2377 Uncharacterized conser 90.8 6.8 0.00015 35.9 12.1 137 4-142 23-173 (657)
425 KOG4499 Ca2+-binding protein R 90.8 8.6 0.00019 32.0 14.6 175 58-233 28-264 (310)
426 PF08801 Nucleoporin_N: Nup133 90.7 7.8 0.00017 36.0 13.4 31 151-181 190-220 (422)
427 TIGR02604 Piru_Ver_Nterm putat 90.7 13 0.00028 33.8 15.6 18 46-63 14-31 (367)
428 KOG1897 Damage-specific DNA bi 90.1 23 0.00051 35.8 22.7 135 68-203 471-643 (1096)
429 KOG4460 Nuclear pore complex, 90.0 7.4 0.00016 36.3 11.7 26 152-177 105-130 (741)
430 PHA02790 Kelch-like protein; P 89.6 17 0.00038 34.4 14.9 60 55-114 317-388 (480)
431 PF14761 HPS3_N: Hermansky-Pud 89.5 8.5 0.00018 31.6 10.7 30 150-181 134-164 (215)
432 PF12234 Rav1p_C: RAVE protein 88.9 19 0.00041 35.1 14.4 54 99-179 48-103 (631)
433 PF05694 SBP56: 56kDa selenium 88.7 19 0.00041 33.1 13.4 89 24-112 221-344 (461)
434 PF07676 PD40: WD40-like Beta 88.6 1.9 4.1E-05 24.3 5.0 28 45-72 8-38 (39)
435 TIGR03074 PQQ_membr_DH membran 88.4 20 0.00044 36.0 14.7 63 57-119 194-287 (764)
436 PF07569 Hira: TUP1-like enhan 87.8 3.5 7.7E-05 34.3 8.0 29 158-186 18-46 (219)
437 COG3823 Glutamine cyclotransfe 87.5 14 0.00031 30.1 12.2 89 24-113 67-161 (262)
438 COG1520 FOG: WD40-like repeat 87.3 23 0.00049 32.2 17.2 105 15-120 68-181 (370)
439 PF14269 Arylsulfotran_2: Aryl 87.2 20 0.00044 31.5 13.0 128 48-178 146-287 (299)
440 COG3204 Uncharacterized protei 87.0 10 0.00022 32.7 10.1 23 123-145 86-108 (316)
441 PHA02713 hypothetical protein; 86.9 25 0.00054 34.1 14.2 58 56-113 303-378 (557)
442 PLN00033 photosystem II stabil 86.8 25 0.00055 32.3 20.2 127 48-177 241-396 (398)
443 KOG1916 Nuclear protein, conta 86.0 0.73 1.6E-05 45.3 3.3 66 47-112 182-257 (1283)
444 KOG4659 Uncharacterized conser 86.0 50 0.0011 34.9 19.2 20 94-113 411-430 (1899)
445 PF10168 Nup88: Nuclear pore c 85.8 20 0.00042 35.8 12.9 86 151-250 85-177 (717)
446 COG4590 ABC-type uncharacteriz 85.6 3.4 7.3E-05 37.7 6.9 142 41-184 216-390 (733)
447 PF11715 Nup160: Nucleoporin N 85.5 2.1 4.5E-05 41.3 6.3 38 151-188 215-256 (547)
448 PF02333 Phytase: Phytase; In 85.3 29 0.00063 31.5 20.2 29 55-83 66-94 (381)
449 KOG1983 Tomosyn and related SN 83.7 13 0.00027 38.7 11.0 30 47-76 37-66 (993)
450 PF12768 Rax2: Cortical protei 83.0 23 0.0005 30.7 10.8 61 24-84 15-81 (281)
451 PF12657 TFIIIC_delta: Transcr 82.8 20 0.00042 28.6 9.8 32 223-254 86-123 (173)
452 PF07676 PD40: WD40-like Beta 81.6 5.3 0.00011 22.4 4.6 19 151-169 9-27 (39)
453 PF12657 TFIIIC_delta: Transcr 81.3 11 0.00025 29.9 8.0 30 152-181 87-122 (173)
454 KOG1898 Splicing factor 3b, su 81.3 42 0.00092 34.4 12.9 138 26-172 854-1017(1205)
455 COG5290 IkappaB kinase complex 79.7 70 0.0015 32.0 16.2 55 19-73 84-140 (1243)
456 KOG1896 mRNA cleavage and poly 79.4 83 0.0018 33.0 14.3 136 52-188 581-751 (1366)
457 KOG3616 Selective LIM binding 79.2 56 0.0012 32.3 12.6 90 45-135 14-110 (1636)
458 PF07250 Glyoxal_oxid_N: Glyox 79.2 38 0.00083 28.7 13.3 32 155-188 174-205 (243)
459 COG4590 ABC-type uncharacteriz 78.9 31 0.00068 31.8 10.3 131 114-246 212-381 (733)
460 TIGR03118 PEPCTERM_chp_1 conse 78.6 45 0.00098 29.2 18.1 64 47-110 24-118 (336)
461 PF01436 NHL: NHL repeat; Int 78.5 7.4 0.00016 20.1 4.3 25 153-177 4-28 (28)
462 TIGR02608 delta_60_rpt delta-6 77.9 14 0.0003 23.0 5.7 18 125-142 3-20 (55)
463 smart00564 PQQ beta-propeller 77.7 7.1 0.00015 20.7 4.1 20 96-115 10-29 (33)
464 KOG1900 Nuclear pore complex, 77.6 21 0.00046 37.3 9.9 41 221-261 241-282 (1311)
465 KOG2247 WD40 repeat-containing 77.4 0.61 1.3E-05 42.6 -0.5 115 24-140 55-177 (615)
466 PF11715 Nup160: Nucleoporin N 77.4 26 0.00057 33.8 10.5 28 94-121 232-259 (547)
467 PF12341 DUF3639: Protein of u 77.3 7.6 0.00017 20.0 3.7 26 46-73 2-27 (27)
468 PRK13684 Ycf48-like protein; P 76.9 55 0.0012 29.3 19.5 91 150-242 172-279 (334)
469 KOG4659 Uncharacterized conser 76.7 1.1E+02 0.0024 32.6 18.0 20 43-62 659-678 (1899)
470 PF01011 PQQ: PQQ enzyme repea 75.5 12 0.00025 21.0 4.7 27 95-121 3-29 (38)
471 PF14761 HPS3_N: Hermansky-Pud 75.1 13 0.00027 30.6 6.4 59 6-65 19-79 (215)
472 KOG1898 Splicing factor 3b, su 74.8 1.1E+02 0.0024 31.7 15.3 94 103-197 854-984 (1205)
473 TIGR02276 beta_rpt_yvtn 40-res 74.4 13 0.00029 20.9 5.9 20 100-119 12-31 (42)
474 PF14781 BBS2_N: Ciliary BBSom 74.0 36 0.00078 25.7 12.9 63 50-113 3-84 (136)
475 KOG3616 Selective LIM binding 71.9 54 0.0012 32.4 10.5 60 14-76 25-84 (1636)
476 COG5290 IkappaB kinase complex 71.0 66 0.0014 32.1 10.9 85 50-134 251-348 (1243)
477 PF13570 PQQ_3: PQQ-like domai 70.2 17 0.00037 20.5 4.9 17 94-110 23-39 (40)
478 COG5276 Uncharacterized conser 69.7 76 0.0016 27.7 18.5 26 89-114 90-118 (370)
479 PHA03098 kelch-like protein; P 68.5 58 0.0013 31.3 10.6 22 161-182 487-513 (534)
480 PF01731 Arylesterase: Arylest 68.2 22 0.00049 24.5 5.5 29 46-74 54-83 (86)
481 PF08728 CRT10: CRT10; InterP 68.1 70 0.0015 31.8 10.6 106 3-109 99-245 (717)
482 COG1770 PtrB Protease II [Amin 67.9 44 0.00095 32.5 9.0 55 152-206 130-190 (682)
483 KOG1897 Damage-specific DNA bi 67.8 1.5E+02 0.0033 30.5 23.7 135 46-180 488-659 (1096)
484 PF03088 Str_synth: Strictosid 67.1 21 0.00046 24.8 5.3 42 23-65 35-76 (89)
485 KOG2109 WD40 repeat protein [G 66.9 8.4 0.00018 37.0 4.2 69 104-172 297-390 (788)
486 PRK13614 lipoprotein LpqB; Pro 65.3 72 0.0016 31.0 10.1 116 133-252 320-464 (573)
487 PF05935 Arylsulfotrans: Aryls 65.3 1.3E+02 0.0028 28.6 14.2 164 56-255 114-304 (477)
488 PF13449 Phytase-like: Esteras 64.4 1.1E+02 0.0023 27.4 14.8 96 46-142 20-166 (326)
489 PF03088 Str_synth: Strictosid 64.0 31 0.00068 23.9 5.6 38 98-136 33-70 (89)
490 PF13449 Phytase-like: Esteras 63.9 1E+02 0.0022 27.5 10.5 75 154-244 88-168 (326)
491 PRK13615 lipoprotein LpqB; Pro 63.8 40 0.00087 32.5 8.1 83 154-239 337-433 (557)
492 PF07995 GSDH: Glucose / Sorbo 62.7 72 0.0016 28.5 9.3 27 149-175 304-330 (331)
493 PRK10115 protease 2; Provision 62.3 1.8E+02 0.0038 29.2 23.1 94 47-142 128-242 (686)
494 KOG2109 WD40 repeat protein [G 61.9 11 0.00024 36.2 3.9 41 146-187 311-351 (788)
495 TIGR03032 conserved hypothetic 61.5 1.2E+02 0.0025 26.9 11.9 84 94-188 215-298 (335)
496 PF14727 PHTB1_N: PTHB1 N-term 58.6 1.6E+02 0.0034 27.4 26.1 129 14-145 36-197 (418)
497 KOG2280 Vacuolar assembly/sort 58.5 2E+02 0.0044 28.7 14.2 131 12-145 91-239 (829)
498 TIGR03606 non_repeat_PQQ dehyd 58.3 1.7E+02 0.0036 27.6 15.4 31 45-75 29-59 (454)
499 PF10214 Rrn6: RNA polymerase 58.2 2.2E+02 0.0048 29.0 14.5 29 151-179 146-175 (765)
500 TIGR02604 Piru_Ver_Nterm putat 57.2 1.5E+02 0.0033 26.9 15.6 26 46-74 72-98 (367)
No 1
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-49 Score=333.31 Aligned_cols=358 Identities=48% Similarity=0.831 Sum_probs=312.3
Q ss_pred CCCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC-------------
Q 046394 1 WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG------------- 67 (378)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg------------- 67 (378)
||+|.++|||++++.++||.+.|+.+..-+|+.+..+.+.|.....+++.+.++.+|++|+.|+..|
T Consensus 85 ~Ll~e~~G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~ 164 (545)
T KOG1272|consen 85 ILLPETAGYLEAEGLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH 164 (545)
T ss_pred eeccccCCcccccCCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee
Confidence 6899999999999999999999999999999999999999999889999999999999999999988
Q ss_pred ---------------------------cEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEE
Q 046394 68 ---------------------------YPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 68 ---------------------------~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
.++|||..|..+++++.|..+..+.| +|++++..|.+..-|+.+|+.+
T Consensus 165 ~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 165 FEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV 244 (545)
T ss_pred eeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhh
Confidence 66777778889999999999888888 8899999999999999999999
Q ss_pred EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
..+....+.+..++.+|-+..+-+|..+|+ +.+|.++|.+|++.++|+|++|+|.|..|+|||+++
T Consensus 245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 999999999999999999999999999998 778999999999999999999999999999999999
Q ss_pred ceeeeee--cCCceEEEEecCCCc--------cccC------CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394 182 YEVLQTL--PGHAKTLDFSRKDSG--------DFSG------SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV 245 (378)
Q Consensus 182 ~~~~~~~--~~~i~~~~~sp~g~~--------~~~~------~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~ 245 (378)
...+.++ +.+...++||..|.. .+|. .....+|..+.. +.+|.+|.|+|-.++|.+|+..|+
T Consensus 325 ~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~--~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 325 FYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRC--GGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhcc--CcccccceeccHHHeeeccccCCc
Confidence 8888777 577888999988764 3332 234567777765 458999999999999999999999
Q ss_pred EEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCCCceeeecccccccCcchhhhhhHHHHHHHhhc
Q 046394 246 SGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVK 325 (378)
Q Consensus 246 ~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (378)
.+++++|++|.+++.|..+||++.+|++|.|+++||+++|+++|++||+.|+.++.......+ ++.+...+.+....
T Consensus 403 tsilVPGsGePN~Ds~e~nPfetrKQRqE~EVr~LLeKippElIsLdp~~i~~vd~~~~~~~k---~e~~~~~~~~~~~~ 479 (545)
T KOG1272|consen 403 TSILVPGSGEPNYDSLEDNPFETRKQRQEKEVRSLLEKIPPELISLDPRVIGIVDEPSLEEKK---DEIERLFEEKPPEA 479 (545)
T ss_pred eeEeccCCCCCCcchhccCcchhhhHHhHHHHHHHHhhCChHhEEechhhccccCcccchhhH---HHHHHHhcccCccc
Confidence 999999999999999999999999999999999999999999999999999999987765552 22222223333344
Q ss_pred ccccccCCCCCCchhhHHHhhhhhhccccchhHHHHHHHH
Q 046394 326 GFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQLKEE 365 (378)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 365 (378)
...++.++|+|++..+ .++++++++++|.+.++.++.+
T Consensus 480 ~~~pr~K~Kgr~s~~k--~k~~knvvd~~r~~ve~~le~~ 517 (545)
T KOG1272|consen 480 GALPRHKTKGRNSGAK--RKKKKNVVDDARLFVEQSLEKE 517 (545)
T ss_pred ccCchhhhccCCchHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999877 4455777777777777766543
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-39 Score=267.31 Aligned_cols=233 Identities=16% Similarity=0.200 Sum_probs=206.3
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCe-EEeeccCCCe-eEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTE-LHCSKEHGEV-LKL 91 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~~~-~~l 91 (378)
....+..+.|.++++||+.+..+.++.++|...|.|++|||||..||+|+.||+|++|| .+|.+ ...+.+|... +++
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~L 206 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITAL 206 (480)
T ss_pred CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEE
Confidence 44566777788999999999999999999999999999999999999999999999999 44544 4779999976 999
Q ss_pred EE----------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------
Q 046394 92 QF----------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------- 145 (378)
Q Consensus 92 ~~----------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------- 145 (378)
+| +||+++.||.|+|||+..+.++..+.+|..+|+|++|--+| +|++|+.|++
T Consensus 207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred eecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc
Confidence 99 89999999999999999999999999999999999996544 7888888887
Q ss_pred -----------------------------------------------------------------------------eee
Q 046394 146 -----------------------------------------------------------------------------MLC 148 (378)
Q Consensus 146 -----------------------------------------------------------------------------~~~ 148 (378)
+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 778
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEE
Q 046394 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYM 215 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~ 215 (378)
|..-|+.+.||||++++|++|.|.+|++||.++|+.+.+| | +.|..++||.|.+. .+|+..+.....
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 9999999999999999999999999999999999999999 4 78899999998764 677777777888
Q ss_pred EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.+.+ |...|+++.|+|||..+++|+.|.++.+|
T Consensus 446 DLpG-h~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 446 DLPG-HADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCCC-CCceEEEEEecCCCceeecCCCceEEEee
Confidence 8888 99999999999999776666666555444
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=237.10 Aligned_cols=234 Identities=15% Similarity=0.182 Sum_probs=212.9
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeEEeeccCCC
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------TELHCSKEHGE 87 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~ 87 (378)
..+.++.++|+.+-|||..|..+++.++.....|..++|+|.|+++|+|+-|+...||+++. ...+.+.+|.+
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg 146 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG 146 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc
Confidence 45678889999999999999999999999999999999999999999999999999999542 23466899999
Q ss_pred e-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe--------------ee
Q 046394 88 V-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT--------------ML 147 (378)
Q Consensus 88 ~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~--------------~~ 147 (378)
. .++.| .|+|++.|.++.+||+++|+.+..|.+|.+.|.++.++| +++.|++|+-|.. +.
T Consensus 147 ylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ 226 (343)
T KOG0286|consen 147 YLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE 226 (343)
T ss_pred eeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence 7 99999 999999999999999999999999999999999999999 8999999999987 88
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc----------cccCCCCCc
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG----------DFSGSHNYN 212 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~----------~~~~~~~~~ 212 (378)
+|...|++++|.|+|.-|+||+.|++.++||+|..+.+..+ ..+|++++||-.|++ .+|+.-..+
T Consensus 227 ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 227 GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 99999999999999999999999999999999999888888 368899999999986 678887788
Q ss_pred eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccc
Q 046394 213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSW 261 (378)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w 261 (378)
.+..+.+ |.++|.++..+||| .-+.+||.|..+++|
T Consensus 307 ~vg~L~G-HeNRvScl~~s~DG------------~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 307 RVGVLAG-HENRVSCLGVSPDG------------MAVATGSWDSTLRIW 342 (343)
T ss_pred eEEEeec-cCCeeEEEEECCCC------------cEEEecchhHheeec
Confidence 8888888 99999999999999 555667777777777
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=254.74 Aligned_cols=233 Identities=13% Similarity=0.101 Sum_probs=207.2
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCC--CCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSS--GRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LK 90 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~--g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~ 90 (378)
.+..+..+=+|.+++|+..+...+..|.+|...|.++.|+|. +..||+|+.||++++|+.++ .++..+.+|..- ..
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSR 266 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhee
Confidence 344555666799999999999999999999999999999997 56899999999999999766 788899999865 89
Q ss_pred EEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCC
Q 046394 91 LQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQG 151 (378)
Q Consensus 91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~ 151 (378)
++| +|+|++.|.+.++||+.++..+....+|...|.+++|+|||.++++|+.|.. +.+|..
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 999 9999999999999999999998888999999999999999999999999877 789999
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecC-CC----------ccccCCCCCceEEEe
Q 046394 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRK-DS----------GDFSGSHNYNRYMGY 217 (378)
Q Consensus 152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~-g~----------~~~~~~~~~~~~~~~ 217 (378)
+|.+|+|+|+|..|||||.|++++|||++...++.++ | .-|+.|.|+|+ |. ..+|...+..++..+
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 9999999999999999999999999999999998888 4 67899999983 33 388999999999999
Q ss_pred eccCCcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394 218 SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI 248 (378)
Q Consensus 218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~ 248 (378)
.+ |...|.++..+||+.++++++.|..+.+
T Consensus 427 aG-He~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 427 AG-HEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred cC-CccceEEEEeccCCceEEEeccCceeee
Confidence 99 9999999999999966555554444333
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=248.81 Aligned_cols=204 Identities=17% Similarity=0.182 Sum_probs=184.7
Q ss_pred cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCc
Q 046394 43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGE 113 (378)
Q Consensus 43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~ 113 (378)
+.+.+|..+.||+|+..|+|||.+|.++||+ .+...+.+|.+|..- .++.| .+|||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 4457889999999999999999999999999 567888999999985 88888 79999999999999999999
Q ss_pred EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394 114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~ 179 (378)
++..+.+|...|..++|+|+|++|++++.|.+ ..||...|.+++|+|||.+++|||.|..-+|||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99999999999999999999999999999998 6799999999999999999999999999999999
Q ss_pred CCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcC-CCCeEEEecCCCe
Q 046394 180 RKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRP-YEDVLGIGHSMGV 245 (378)
Q Consensus 180 ~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~g~ 245 (378)
++|.++..+ | ..|.++.|||+|.. .+|+.+....+....+ |.+-|+.|.|+| .|.+|++++.|+.
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-ccchhhheEecccCCeEEEEcccCcc
Confidence 999999999 4 78999999999875 7898888888888888 999999999999 6655555555554
Q ss_pred EE
Q 046394 246 SG 247 (378)
Q Consensus 246 ~~ 247 (378)
+.
T Consensus 412 ~k 413 (459)
T KOG0272|consen 412 VK 413 (459)
T ss_pred ee
Confidence 43
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-32 Score=219.02 Aligned_cols=238 Identities=17% Similarity=0.157 Sum_probs=193.5
Q ss_pred CeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC
Q 046394 8 GYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG 86 (378)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~ 86 (378)
..+.+.+.|+++.+|.-.. =|...|..+..+.+|...|..+..++||++.++++.|+.+++|| ..|...+.|.+|.
T Consensus 29 ~~l~sasrDk~ii~W~L~~---dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTS---DDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred ceEEEcccceEEEEEEecc---CccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence 3444444555554443111 14566778899999999999999999999999999999999999 5668889999999
Q ss_pred Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCC--CCEEEEEcCCCe-----------
Q 046394 87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPF--NGVVSLGHSGGT----------- 145 (378)
Q Consensus 87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~--~~~l~~~~~d~~----------- 145 (378)
.. .+++| .+++|+.|.+|.+||+- +.+..++..+ .+-|+|++|+|. ..+|++++.|+.
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 75 99999 99999999999999985 4454455443 688999999998 679999999998
Q ss_pred ---eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc---------cccCCCCC
Q 046394 146 ---MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG---------DFSGSHNY 211 (378)
Q Consensus 146 ---~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~---------~~~~~~~~ 211 (378)
+.+|++.++.+++||||.++++|+.||.+.+||++.++.+.++ ...|.+++|+|+... .+|+..+.
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence 7899999999999999999999999999999999999999999 478999999998764 77777766
Q ss_pred ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 212 NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 212 ~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
..+..+... ......+++|++||..|.+|..++.+.+|
T Consensus 265 ~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 265 AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 665544321 12346789999999888888777765554
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=234.02 Aligned_cols=228 Identities=16% Similarity=0.212 Sum_probs=195.2
Q ss_pred eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394 36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN 108 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd 108 (378)
.+..++.+|.++|.|+.|+|+|..|++|+.|.++++|| .+..++++.++|... .+++| .||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567889999999999999999999999999999999 567789999999986 99999 999999999999999
Q ss_pred cCCCcEE-EEEecCCCCeeEEEEcC-----CCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEE
Q 046394 109 VTMGEIV-GNFWTGLGRTDVIRVNP-----FNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATS 168 (378)
Q Consensus 109 ~~~~~~~-~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~ 168 (378)
..+|+++ ..+.+|...|++++|.| ..++||+++.||. +.+|..+|+|+.|-.+| +++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence 9998764 67889999999999976 5679999999998 78999999999998776 89999
Q ss_pred ECCCeEEEEEcCCceeeeee--c-CCceEEEEecC-----------CC--------------------------------
Q 046394 169 GKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRK-----------DS-------------------------------- 202 (378)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~-----------g~-------------------------------- 202 (378)
|.|++|++|+...|.+++.+ | ..|+.+++|.| |.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 99999999999999999988 4 56888877742 22
Q ss_pred ---ccccCCCC-CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEE------------------------------E
Q 046394 203 ---GDFSGSHN-YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG------------------------------I 248 (378)
Q Consensus 203 ---~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~------------------------------~ 248 (378)
..+|+... .+++....+ |..-|+.+.||||++++|+++.|..+. +
T Consensus 345 d~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 14555432 335555666 888999999999999999999887544 7
Q ss_pred EEcCCCCcccccccCCC
Q 046394 249 LIPGSGEPNFDSWVANP 265 (378)
Q Consensus 249 ~~~~s~d~~i~~w~~~~ 265 (378)
+++||.|.++++|++..
T Consensus 424 lVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEEcCCCceEEEEEeee
Confidence 78999999999998743
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.4e-33 Score=232.65 Aligned_cols=235 Identities=15% Similarity=0.171 Sum_probs=201.3
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC-C-eeEEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG-E-VLKLQ 92 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~l~ 92 (378)
.-+.+..++.|...+|+..+-.--..+..|+..|.++.||++|.++++|+.+|.|++|+.+...+..+.+|. . +.+++
T Consensus 108 GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdla 187 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLA 187 (464)
T ss_pred CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheec
Confidence 456777888899999998666666667899999999999999999999999999999998888888887776 4 49999
Q ss_pred E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE
Q 046394 93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV 153 (378)
Q Consensus 93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v 153 (378)
| .|++|+.||+|+|||....+.-..+.+|.-.|.+++|+|...+|++++.|.. +.+|+..|
T Consensus 188 fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV 267 (464)
T KOG0284|consen 188 FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV 267 (464)
T ss_pred cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence 9 8999999999999999988888888999999999999999999999999987 77899999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEec-----------CCCccccCCCCCceEEEeec
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSR-----------KDSGDFSGSHNYNRYMGYSM 219 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp-----------~g~~~~~~~~~~~~~~~~~~ 219 (378)
..+.|+|++++|+|+|.|..+++||+++.+.+.++ ...++++.|+| ||....|......++.....
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc
Confidence 99999999999999999999999999988888888 36899999999 45555665555555555555
Q ss_pred cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.|...|++++|+|-|.+|++|+.|..+.+|
T Consensus 348 AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 348 AHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred ccccceeeeeccccceeEeecCCCcceeee
Confidence 588899999999999555555555544444
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.6e-31 Score=223.66 Aligned_cols=232 Identities=18% Similarity=0.241 Sum_probs=210.5
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF 93 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~ 93 (378)
...+....++.+++|+. ++..+.+|..|.++|+++.|+..|+||++++.|+++.+|| .+|.....+..|..+ .++.|
T Consensus 248 ~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 34455667899999986 6777889999999999999999999999999999999999 678888888889888 88999
Q ss_pred ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEE
Q 046394 94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSA 155 (378)
Q Consensus 94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~ 155 (378)
-|++++.|+.|+++.+....++.++.+|.+.|+++.|+|.|.+|+++++|++ +.+|...|..
T Consensus 327 ~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 327 QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 9999999999999999989999999999999999999999999999999999 7889999999
Q ss_pred EEEecCC---------CEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCce
Q 046394 156 LAFHPNG---------HLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNR 213 (378)
Q Consensus 156 ~~~sp~g---------~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~ 213 (378)
+.|+|+| ..+++++.|++|++||+..+.++++| ..+|.+++|||+|.+ .+|+.+....
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 9999964 46999999999999999999999999 479999999999986 7788889999
Q ss_pred EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
+..+.+ ...|..|+|+.+|.+|.++..+|.++++.
T Consensus 487 ~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 487 VKSYQG--TGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred eEeecC--CCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 998876 55699999999999999999999777653
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.1e-32 Score=243.49 Aligned_cols=214 Identities=16% Similarity=0.175 Sum_probs=189.9
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------CeEEeecc
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--------------------------------TELHCSKE 84 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------------------------------~~~~~~~~ 84 (378)
+.+++.....++.|..||+|+..||.|..|..|++|.++. .....+.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3455555567899999999999999999999999998531 12345788
Q ss_pred CCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394 85 HGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------- 145 (378)
Q Consensus 85 ~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------- 145 (378)
|.++ ....| +|++|+.|+++++|.+.+..++..+.+|..+|+.+.|+|-|-+||+++.|++
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 9987 88999 9999999999999999999999999999999999999999999999999998
Q ss_pred -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCC
Q 046394 146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNY 211 (378)
Q Consensus 146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~ 211 (378)
+.+|.+.|.|+.|+|+.+|++|||.|.+||+||+.+|..++.| .++|.+++|||+|++ .+|+...+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 7789999999999999999999999999999999999999999 489999999999986 78898888
Q ss_pred ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 212 NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
.++..+.+ |.+.|+++.||.+| .++++|+.|.++++||.
T Consensus 610 ~~v~~l~~-Ht~ti~SlsFS~dg------------~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 610 SLVKQLKG-HTGTIYSLSFSRDG------------NVLASGGADNSVRLWDL 648 (707)
T ss_pred cchhhhhc-ccCceeEEEEecCC------------CEEEecCCCCeEEEEEc
Confidence 88888888 89999999999999 55556666667777764
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-31 Score=226.71 Aligned_cols=203 Identities=19% Similarity=0.266 Sum_probs=180.6
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
..|++++|+.+|..||+|+.||.++||+.+|..+.++..|.++ .++.| +|++++.|+++.+||..+|...+.|.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 4799999999999999999999999999999999999999998 99999 99999999999999999999999999
Q ss_pred cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceee
Q 046394 120 TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVL 185 (378)
Q Consensus 120 ~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~ 185 (378)
.|..+...+.|-.+. .|++.+.|+. +.+|.++|.++.|+|.|.+|+|+|.|++++||......+.
T Consensus 316 ~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 316 FHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred eccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 888776667775443 4455555544 7889999999999999999999999999999999888888
Q ss_pred eee--c-CCceEEEEecCCCc-------------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394 186 QTL--P-GHAKTLDFSRKDSG-------------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM 243 (378)
Q Consensus 186 ~~~--~-~~i~~~~~sp~g~~-------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 243 (378)
+.+ | ..|..+.|||+|.. .+|+...+.++..+.. |..+|++|+|+|+|++||+|+.|
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~~pVysvafS~~g~ylAsGs~d 473 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQEPVYSVAFSPNGRYLASGSLD 473 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CCCceEEEEecCCCcEEEecCCC
Confidence 877 4 67999999998862 7888899999999877 99999999999999999999999
Q ss_pred CeEEEEE
Q 046394 244 GVSGILI 250 (378)
Q Consensus 244 g~~~~~~ 250 (378)
|.+.+|-
T Consensus 474 g~V~iws 480 (524)
T KOG0273|consen 474 GCVHIWS 480 (524)
T ss_pred CeeEecc
Confidence 9877764
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2e-29 Score=202.07 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=181.0
Q ss_pred eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC------CCCeEEeeccCCCe-eEEEE-----EEEEEeCCC
Q 046394 36 RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR------DGTELHCSKEHGEV-LKLQF-----LLASINKLG 102 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~------~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~ 102 (378)
...-.+.+|++.|..++..+.+ ..|++++.|..+.+|++ .|.+++.+.+|... ..+.. ++++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 3456789999999999999875 57889999999999994 35678899999875 66665 999999999
Q ss_pred eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eee--cCCCEEEEEEecC--CCEE
Q 046394 103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLC--HQGPVSALAFHPN--GHLM 165 (378)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~--h~~~v~~~~~sp~--g~~l 165 (378)
++++||+.+++..+.|.+|...|.+++|+||++.+++|+.|.+ +.. |.+.|.|++|+|+ .-+|
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 9999999999999999999999999999999999999999998 222 3788999999997 6789
Q ss_pred EEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcC
Q 046394 166 ATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRP 232 (378)
Q Consensus 166 ~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 232 (378)
+++|.|++|++||+++.+....+ | +.++.+++||||.. .+|+....+.++.+. +...|.+++|+|
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fsp 243 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSP 243 (315)
T ss_pred EEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecC
Confidence 99999999999999999998888 3 78899999999986 667766666665554 678899999999
Q ss_pred CCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394 233 YEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP 265 (378)
Q Consensus 233 ~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~ 265 (378)
+...|+.+ -+..|+||+..+
T Consensus 244 nrywL~~a-------------t~~sIkIwdl~~ 263 (315)
T KOG0279|consen 244 NRYWLCAA-------------TATSIKIWDLES 263 (315)
T ss_pred CceeEeec-------------cCCceEEEeccc
Confidence 96444433 344478887644
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.2e-28 Score=213.28 Aligned_cols=232 Identities=12% Similarity=0.122 Sum_probs=191.8
Q ss_pred ceeeEEEeccceeeeeecccceeeEEee---cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe--
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIM---LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-- 88 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~---~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-- 88 (378)
.++++....|+.+.+||-.+++++..|. +|.++|++++|+||+..+++++.|.+++|||. +...+.++.....+
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 6778888999999999999999999998 89999999999999999999999999999994 55666666544432
Q ss_pred --eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------
Q 046394 89 --LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------ 145 (378)
Q Consensus 89 --~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------ 145 (378)
..+.| .|++.+.+|+|.+++.....++..+.+|...|++++.+|++.+|++|+.||.
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~ 361 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG 361 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc
Confidence 45556 9999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------------------------eeec-------
Q 046394 146 ---------------------------------------------------------------------MLCH------- 149 (378)
Q Consensus 146 ---------------------------------------------------------------------~~~h------- 149 (378)
+..+
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 1111
Q ss_pred -CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee---e--cCCceEEEEecCCCc----------cccCCCCCce
Q 046394 150 -QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT---L--PGHAKTLDFSRKDSG----------DFSGSHNYNR 213 (378)
Q Consensus 150 -~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~---~--~~~i~~~~~sp~g~~----------~~~~~~~~~~ 213 (378)
.....+++++|+++.++.|+.|+.|+||.+..+.+... + .+.+++++|||||.+ .+|+..+...
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 22356899999999999999999999999987554322 2 589999999999997 3444444433
Q ss_pred E-EEeeccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394 214 Y-MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG 247 (378)
Q Consensus 214 ~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~ 247 (378)
. ..|.. |...|.+++|+|+..++|+|+-|-.+.
T Consensus 522 ~~~~w~F-HtakI~~~aWsP~n~~vATGSlDt~Vi 555 (603)
T KOG0318|consen 522 KTNRWAF-HTAKINCVAWSPNNKLVATGSLDTNVI 555 (603)
T ss_pred ecceeee-eeeeEEEEEeCCCceEEEeccccceEE
Confidence 2 23444 889999999999998877777776443
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=224.25 Aligned_cols=226 Identities=19% Similarity=0.230 Sum_probs=192.3
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEE
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLAS 97 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s 97 (378)
+.+-||+..+..-+....+|...+.++++||||++||+|+.||.|+||| .+|.++.++..|+.. +.+.| .+++
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 5889999999999999999999999999999999999999999999999 789999999999976 99999 8999
Q ss_pred EeCCCeEEEEEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecC
Q 046394 98 INKLGQLRYQNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPN 161 (378)
Q Consensus 98 ~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~ 161 (378)
++-||+|+.||+......++|... .-+..|++..|.|.++..|+.|.- +.||.++|.+++|+|+
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999999999999998754 467889999999999999998876 7899999999999999
Q ss_pred CCEEEEEECCCeEEEEEcCCc-eeeeee--cCCceEEEEecCCCc----------cccCCCCCceEEEee----------
Q 046394 162 GHLMATSGKDCKIKIWDLRKY-EVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYS---------- 218 (378)
Q Consensus 162 g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~---------- 218 (378)
|..|+++|.|.+|++||+-.. ....++ ...+..++|+|||.- .+|+...........
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~ 569 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK 569 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence 999999999999999998653 344555 578999999999873 344433222221111
Q ss_pred ---------ccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 219 ---------MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 219 ---------~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
...+.+.+.+++|+||.++++|+....++++.
T Consensus 570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 11456789999999999999999888777664
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=209.61 Aligned_cols=226 Identities=17% Similarity=0.218 Sum_probs=200.8
Q ss_pred EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCCCe-eEEEE---
Q 046394 20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHGEV-LKLQF--- 93 (378)
Q Consensus 20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~-~~l~~--- 93 (378)
..+.+.+|++||..+++....|.+|..+|..|+|+..|.+|++++.|-.+.+||... .++..+.+|... .++.|
T Consensus 125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL 204 (406)
T ss_pred EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence 344589999999999999999999999999999999999999999999999999644 566778888876 88888
Q ss_pred --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEE
Q 046394 94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALA 157 (378)
Q Consensus 94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~ 157 (378)
++++++.|.+|+.|++.+|-++.+|.+|...|..++.+.||.++|+++.|.. +..|..+|.+++
T Consensus 205 gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIA 284 (406)
T ss_pred CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEE
Confidence 9999999999999999999999999999999999999999999999999988 678999999999
Q ss_pred EecC---------------CCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCC
Q 046394 158 FHPN---------------GHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSH 209 (378)
Q Consensus 158 ~sp~---------------g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~ 209 (378)
|-|. +.++++++.|++|++||+.++.++.++ | ..|..++|+|.|+| .+|+..
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9763 358999999999999999999999999 4 78999999999986 788888
Q ss_pred CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394 210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVS 246 (378)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~ 246 (378)
..++...+.. |..-|+++.|+-+-.++++|+-|-.+
T Consensus 365 ~~~cmk~~~a-h~hfvt~lDfh~~~p~VvTGsVdqt~ 400 (406)
T KOG0295|consen 365 NLQCMKTLEA-HEHFVTSLDFHKTAPYVVTGSVDQTV 400 (406)
T ss_pred cceeeeccCC-CcceeEEEecCCCCceEEecccccee
Confidence 8888888887 88889999999988655554444433
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.5e-28 Score=210.48 Aligned_cols=245 Identities=15% Similarity=0.155 Sum_probs=208.2
Q ss_pred eecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------
Q 046394 10 LEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG------------- 76 (378)
Q Consensus 10 l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~------------- 76 (378)
|-.+.....+.+.+...+-+.++........+..|...++-..|||.|.|+|+|...|.|+|||..+
T Consensus 24 ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a 103 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA 103 (603)
T ss_pred eccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc
Confidence 4444466778888999999999999999999999999999999999999999999999999999322
Q ss_pred ----------------------------------CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEE
Q 046394 77 ----------------------------------TELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 77 ----------------------------------~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
..+-.+.+|... ++++| .++||+.|++|.+|+-.-.+.-
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk 183 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFK 183 (603)
T ss_pred cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeee
Confidence 011223456555 77777 8999999999999987777777
Q ss_pred EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------e---eecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------M---LCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~---~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
.++..|...|+|+.|+|||..|++++.||. + .+|.+.|.+++|+||+..|+|+|.|.+++|||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 888889999999999999999999999998 3 37999999999999999999999999999999
Q ss_pred cCCceeeeee--cCC-----c-------eEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394 179 LRKYEVLQTL--PGH-----A-------KTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 179 ~~~~~~~~~~--~~~-----i-------~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
+.+.+++.++ ... + .-+..|-+|.+.+.+.....++....+ |...|+++..+|++.+|.+|+.||
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G-HnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG-HNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc-cccceeEEEEcCCCCEEEeeccCc
Confidence 9999999888 221 1 224556677778888888888889999 999999999999999999999999
Q ss_pred eEEEEEcCCCC
Q 046394 245 VSGILIPGSGE 255 (378)
Q Consensus 245 ~~~~~~~~s~d 255 (378)
.+.-|.++++.
T Consensus 343 ~I~~W~~~~g~ 353 (603)
T KOG0318|consen 343 HINSWDSGSGT 353 (603)
T ss_pred eEEEEecCCcc
Confidence 99988877653
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=199.54 Aligned_cols=222 Identities=13% Similarity=0.156 Sum_probs=189.2
Q ss_pred eccceeeeeec-ccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----
Q 046394 22 KQEAIAREVDI-LSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF----- 93 (378)
Q Consensus 22 ~~~~~i~~~d~-~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~----- 93 (378)
..|..|-+|++ ...+....+++|.++|..+.|.+|++.|+++|.|.+|+.|| .+|+.+..+++|... +++.-
T Consensus 66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~ 145 (338)
T KOG0265|consen 66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP 145 (338)
T ss_pred CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC
Confidence 33445555553 45567788899999999999999999999999999999999 788999999999987 66655
Q ss_pred -EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEE
Q 046394 94 -LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAF 158 (378)
Q Consensus 94 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~ 158 (378)
++.+++.|+++++||+++..++.++. ..-+++++.|..++..+.+|+-|+. +.+|.++|+.+..
T Consensus 146 ~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsl 224 (338)
T KOG0265|consen 146 QLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSL 224 (338)
T ss_pred eEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEe
Confidence 88899999999999999988888774 3467899999999999999998865 7899999999999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCc----eeeeee----c---CCceEEEEecCCCc----------cccCCCCCceEEEe
Q 046394 159 HPNGHLMATSGKDCKIKIWDLRKY----EVLQTL----P---GHAKTLDFSRKDSG----------DFSGSHNYNRYMGY 217 (378)
Q Consensus 159 sp~g~~l~t~~~d~~i~iwd~~~~----~~~~~~----~---~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~ 217 (378)
+|+|.++++-+.|.++++||++-. .++..+ + -..-..+|||++.+ .+|+......++.+
T Consensus 225 s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 225 SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred ccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence 999999999999999999999853 334444 1 23466799999875 78898888889999
Q ss_pred eccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394 218 SMVKGYQIGKVSFRPYEDVLGIGHSMGV 245 (378)
Q Consensus 218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~ 245 (378)
.+ |...|+++.|+|...+|.+++.|..
T Consensus 305 pG-h~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 305 PG-HYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred CC-cceeEEEeeecCCCcEEEEeccCce
Confidence 99 9899999999999998888888873
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=5.7e-28 Score=190.75 Aligned_cols=227 Identities=14% Similarity=0.175 Sum_probs=186.1
Q ss_pred EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEeeccCCC-eeEEEE--
Q 046394 20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---GTELHCSKEHGE-VLKLQF-- 93 (378)
Q Consensus 20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~-~~~l~~-- 93 (378)
+.+.|.+|++|...+|.+..++...++-|+.+...|+++.||+++.. .|++||++ ..++.++.+|.. ++++.|
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred eccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence 34456667777799999999999999999999999999999998765 79999942 347899999965 599999
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEE
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSA 155 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~ 155 (378)
.++|||.||+++|||++...+.+.+. +..+|+++..+|+...|+++..+|. +......|.+
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 99999999999999999977777775 5699999999999999999999998 2223467899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCce------eeeee---cCCceEEEEecCCCc----------cccCCCCC-ceEE
Q 046394 156 LAFHPNGHLMATSGKDCKIKIWDLRKYE------VLQTL---PGHAKTLDFSRKDSG----------DFSGSHNY-NRYM 215 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~------~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~-~~~~ 215 (378)
++..|||.+++.+...|..++|++-+.. ++..+ .+.+..+.+|||+++ .+|+..+. ..-.
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 9999999999999999999999987643 33444 378899999999997 66776665 4445
Q ss_pred EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
...+ |...+.+++||.||.||++|+.|+..++|
T Consensus 253 ~l~g-h~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 253 VLTG-HQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred Eeec-CCceEEeeeeccCccEEEecCCCCceeec
Confidence 5666 77889999999999776666666544444
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=7.4e-28 Score=194.27 Aligned_cols=217 Identities=16% Similarity=0.193 Sum_probs=182.0
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcC
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVT 110 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~ 110 (378)
...|++|...|+++.|++|+++|++++.||.+.||| .++..++.+.-.... ...+| ++|+|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 478999999999999999999999999999999999 788888888777765 77888 99999999999999998
Q ss_pred CC------cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEec-CCCEEEEEE
Q 046394 111 MG------EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHP-NGHLMATSG 169 (378)
Q Consensus 111 ~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp-~g~~l~t~~ 169 (378)
+. ...+.+.+|.+.+.|+.|.+ ...|++++.|.+ +.+|.+.|.+++++| +++.|++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 65 34567889999999999999 456677777776 889999999999999 999999999
Q ss_pred CCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeec-cCCcceeeeEEcCCCC
Q 046394 170 KDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM-VKGYQIGKVSFRPYED 235 (378)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~ 235 (378)
.|++.+|||+|.+.+.++| | +.|+++.|.|+|.- .+++.+..+.+..+.. ....+|++++||-.|+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 9999999999999999999 3 78999999999874 4555554444444432 1356799999999998
Q ss_pred eEEEecCCCeEEEEEcCCCC
Q 046394 236 VLGIGHSMGVSGILIPGSGE 255 (378)
Q Consensus 236 ~l~~~~~~g~~~~~~~~s~d 255 (378)
+|.+|..|..+.+|.+-.++
T Consensus 287 lLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred EEEeeecCCceeEeeccccc
Confidence 88888777766666544443
No 20
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.3e-30 Score=212.24 Aligned_cols=306 Identities=13% Similarity=0.064 Sum_probs=216.6
Q ss_pred eEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCC
Q 046394 38 QYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTM 111 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~ 111 (378)
+..|.+|..+|.|++-+|.. ..+|+|+.||.|+|||+ ...++.++.+|.+. ..+++ .++++|.|.+|+.|-+.-
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence 44578999999999999987 78999999999999995 45678899999986 88888 999999999999999854
Q ss_pred CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEE
Q 046394 112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWD 178 (378)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd 178 (378)
.++.++. ....+..+.-+..+..+++++.+-. +......|.++.|+|. ...|++|+.|++|.|||
T Consensus 139 -~p~~til-g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 139 -PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred -Ccceeee-ccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 4666664 3466778888888888998886554 4455677899999994 45688888999999999
Q ss_pred cCCceeeeee--cCCceEEEEecCCCccc----------cCC-CCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394 179 LRKYEVLQTL--PGHAKTLDFSRKDSGDF----------SGS-HNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV 245 (378)
Q Consensus 179 ~~~~~~~~~~--~~~i~~~~~sp~g~~~~----------~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~ 245 (378)
++++.+++.+ ....+.|+|+|.+...+ ++. ....++..+.+ |.+.|.+|.|||.|+
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-hvsAV~dVdfsptG~---------- 285 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-HVSAVMDVDFSPTGQ---------- 285 (433)
T ss_pred cccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc-cceeEEEeccCCCcc----------
Confidence 9999999888 68889999999554322 222 23345667777 999999999999994
Q ss_pred EEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCCCceeeecccccccCcchhhhhhHHHHHHHhhc
Q 046394 246 SGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVK 325 (378)
Q Consensus 246 ~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (378)
-+++||.|.+|+|+..+.-..-.....+-. ...-.-..+.|..+|-....+.+...|+....+....-...++.
T Consensus 286 --EfvsgsyDksIRIf~~~~~~SRdiYhtkRM----q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~ 359 (433)
T KOG0268|consen 286 --EFVSGSYDKSIRIFPVNHGHSRDIYHTKRM----QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPREKN 359 (433)
T ss_pred --hhccccccceEEEeecCCCcchhhhhHhhh----heeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChhHHH
Confidence 455666666666666543222111000000 01112245677778888888888888877665544333333344
Q ss_pred ccccccCCCCCCchhhHHHhhhhhhccccchhHHHHH
Q 046394 326 GFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQL 362 (378)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 362 (378)
..+...+.|.+.+.-.+.|+..++...++..+.+++.
T Consensus 360 ~~~Y~e~Lke~y~~~peIkRIarHR~lPk~i~~a~ki 396 (433)
T KOG0268|consen 360 KLEYNEALKERYKHLPEIKRIARHRHLPKPIKKAQKI 396 (433)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHhhccCCHHHHHHHHH
Confidence 4444455555555555666666666666654444433
No 21
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-28 Score=216.29 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=201.4
Q ss_pred eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeecc-CCCe-eEEEE
Q 046394 17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKE-HGEV-LKLQF 93 (378)
Q Consensus 17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~~~~-~~l~~ 93 (378)
..+.+.-...+++|+..++........+...|+++.|+++|.+||+|..+|.|.||| .+...+..+.+ |..- .+++|
T Consensus 189 n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred CeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence 355666677899999999987666666688999999999999999999999999999 45666777887 6654 99999
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEE-EecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEE
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGN-FWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSA 155 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~ 155 (378)
.+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++|+|+.|+. +..|.+.|.+
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 899999999999999998776554 7789999999999999999999999988 7789999999
Q ss_pred EEEec-CCCEEEEEE--CCCeEEEEEcCCceeeeee--cCCceEEEEecCCC------------ccccCCCCCceEEEee
Q 046394 156 LAFHP-NGHLMATSG--KDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS------------GDFSGSHNYNRYMGYS 218 (378)
Q Consensus 156 ~~~sp-~g~~l~t~~--~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~------------~~~~~~~~~~~~~~~~ 218 (378)
++|+| ...+||+|+ .|++|++||..++..+..+ ...|++|.|++..+ ..+|...+..++..+.
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL 428 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence 99999 667888876 6999999999999999999 68999999999774 3677777777888888
Q ss_pred ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394 219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN 264 (378)
Q Consensus 219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~ 264 (378)
+ |..+|..++++|||.. +++|++|.++++|+.-
T Consensus 429 g-H~~RVl~la~SPdg~~------------i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 429 G-HTSRVLYLALSPDGET------------IVTGAADETLRFWNLF 461 (484)
T ss_pred C-CcceeEEEEECCCCCE------------EEEecccCcEEecccc
Confidence 8 9999999999999954 5556666677777653
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.6e-28 Score=219.04 Aligned_cols=236 Identities=19% Similarity=0.210 Sum_probs=210.5
Q ss_pred ecCCceeeEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394 11 EAEGVEKTWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV 88 (378)
Q Consensus 11 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~ 88 (378)
..++.+..+.......+++|++.+++.+..++. |..+|..++|+|.|..+++|+.||.|+||| ..+.+.+.|++|.++
T Consensus 70 l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGv 149 (775)
T KOG0319|consen 70 LTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGV 149 (775)
T ss_pred ecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCce
Confidence 344467788888899999999999999999998 999999999999999999999999999999 566788999999998
Q ss_pred -eEEEE-------EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------
Q 046394 89 -LKLQF-------LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------- 145 (378)
Q Consensus 89 -~~l~~-------~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------- 145 (378)
.++.| +|++|..|+++++||+.+... +..+..|.+.|++++|++|+..+++++.|..
T Consensus 150 Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~ 229 (775)
T KOG0319|consen 150 VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKT 229 (775)
T ss_pred EEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhe
Confidence 88999 789999999999999986554 7777889999999999999988888888876
Q ss_pred --------------------------------------------------------------------------------
Q 046394 146 -------------------------------------------------------------------------------- 145 (378)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (378)
T Consensus 230 lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d 309 (775)
T KOG0319|consen 230 LPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYD 309 (775)
T ss_pred echhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046394 146 -------------------------------------------------------------------------------- 145 (378)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (378)
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE
Confidence
Q ss_pred ---------------------------------------------------------------------eeecCCCEEEE
Q 046394 146 ---------------------------------------------------------------------MLCHQGPVSAL 156 (378)
Q Consensus 146 ---------------------------------------------------------------------~~~h~~~v~~~ 156 (378)
...|...|+++
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 34577889999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCC----------ccccCCCCCceEEEeeccCCc
Q 046394 157 AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDS----------GDFSGSHNYNRYMGYSMVKGY 223 (378)
Q Consensus 157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~----------~~~~~~~~~~~~~~~~~~~~~ 223 (378)
+++|+..++||||.|.+.+||++..+..+.++ | ..+.++.|+|..+ ..+|...+..++.++.| |..
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~ 548 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTS 548 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-ccc
Confidence 99999999999999999999999988888888 3 7899999998644 48899999999999999 999
Q ss_pred ceeeeEEcCCCCeEEEecCCCeEE
Q 046394 224 QIGKVSFRPYEDVLGIGHSMGVSG 247 (378)
Q Consensus 224 ~v~~~~~sp~g~~l~~~~~~g~~~ 247 (378)
.|..+.|-.+|..|++++.||.+.
T Consensus 549 aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEE
Confidence 999999999999999999999766
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.8e-28 Score=221.91 Aligned_cols=176 Identities=26% Similarity=0.322 Sum_probs=161.0
Q ss_pred eecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCC
Q 046394 30 VDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLG 102 (378)
Q Consensus 30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~ 102 (378)
.|.........+.+|.++|+++.|+|+.++|++++.|++|++|.+ +...+..+++|..+ .++.| +|||+|.|+
T Consensus 436 ~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 436 LDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred ccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence 333444455678999999999999999999999999999999994 55677888999987 99999 999999999
Q ss_pred eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEE
Q 046394 103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATS 168 (378)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~ 168 (378)
+.++|....-.+.+.+.+|.+.|.|+.|+|++.++++|+.|.+ +.||.++|++++|||+|++|++|
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence 9999999999999999999999999999999999999999988 88999999999999999999999
Q ss_pred ECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCccc
Q 046394 169 GKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSGDF 205 (378)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~ 205 (378)
+.||.|.|||+.++.++..+ | +.+.++.||.||...+
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLa 635 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLA 635 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEE
Confidence 99999999999999999888 4 7899999999998633
No 24
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.1e-27 Score=212.46 Aligned_cols=248 Identities=12% Similarity=0.163 Sum_probs=208.0
Q ss_pred eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE--
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-- 93 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-- 93 (378)
......||.|++|+..+......+.+|..+|+++.|+..|..||+||.|+.|.+|| +...-+..+.+|.+. +.+-|
T Consensus 80 lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~ 159 (888)
T KOG0306|consen 80 LAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN 159 (888)
T ss_pred EEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence 34556699999999999999999999999999999999999999999999999999 455567889999986 77777
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------- 145 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------- 145 (378)
++++++.|+.|++||+.+..|..+...|.+.++.+++.+ +.+++++.++.
T Consensus 160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G 237 (888)
T KOG0306|consen 160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRG 237 (888)
T ss_pred CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccc
Confidence 899999999999999999999999999999999999988 55555544443
Q ss_pred --------------------------------------------------------------------------------
Q 046394 146 -------------------------------------------------------------------------------- 145 (378)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (378)
T Consensus 238 ~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i 317 (888)
T KOG0306|consen 238 TFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI 317 (888)
T ss_pred eeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046394 146 -------------------------------------------------------------------------------- 145 (378)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (378)
T Consensus 318 r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Sik 397 (888)
T KOG0306|consen 318 RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIK 397 (888)
T ss_pred echhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEE
Confidence
Q ss_pred ----------------------------------------------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394 146 ----------------------------------------------------MLCHQGPVSALAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 146 ----------------------------------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~ 173 (378)
..+|.+.|.+++.+||+..++|||.|.+
T Consensus 398 iWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred EEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence 6689999999999999999999999999
Q ss_pred EEEEEcCC-----cee---e-----eee--cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeee
Q 046394 174 IKIWDLRK-----YEV---L-----QTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKV 228 (378)
Q Consensus 174 i~iwd~~~-----~~~---~-----~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (378)
|++||..- |.. + +++ ...+.|+.+||||++ .++-..+...+..+.| |.-||.++
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~sm 556 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSM 556 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEE
Confidence 99999742 111 1 222 578999999999997 3334456666677778 99999999
Q ss_pred EEcCCCCeEEEecCCCeEE------------------------------EEEcCCCCcccccccCCCccc
Q 046394 229 SFRPYEDVLGIGHSMGVSG------------------------------ILIPGSGEPNFDSWVANPFET 268 (378)
Q Consensus 229 ~~sp~g~~l~~~~~~g~~~------------------------------~~~~~s~d~~i~~w~~~~~~~ 268 (378)
..|||+..+++|+.|..+. ++.+.+.|+.++-||...|+.
T Consensus 557 DIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred eccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhh
Confidence 9999999999999988554 456788899999998766643
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=183.07 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=168.5
Q ss_pred ceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE-----EEE
Q 046394 25 AIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF-----LLA 96 (378)
Q Consensus 25 ~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~-----~l~ 96 (378)
.-|++||+.++. ++.++.+|...|.++.|..+|+++++||.||+++|||+..........|.. ++++.. .|+
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELI 140 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEE
Confidence 348899998875 588999999999999999999999999999999999965443333334444 477777 899
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEE
Q 046394 97 SINKLGQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSA 155 (378)
Q Consensus 97 s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~ 155 (378)
+|..+|.|++||+....+...+.. ....+.+++..|||+.++.+...|. +..|++.+..
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 999999999999998777666544 4468999999999999999988887 7789999999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccC
Q 046394 156 LAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVK 221 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~ 221 (378)
+.+||++++||++|.|.+++||++.+. +.-..+ ...+...+||.||.| .+|+...++.+..+.+ |
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g-h 299 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG-H 299 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC-c
Confidence 999999999999999999999999887 333333 357899999999987 6777777787888887 5
Q ss_pred CcceeeeEE
Q 046394 222 GYQIGKVSF 230 (378)
Q Consensus 222 ~~~v~~~~~ 230 (378)
..+..+++.
T Consensus 300 ~K~~vc~~l 308 (311)
T KOG0315|consen 300 HKAAVCVAL 308 (311)
T ss_pred ccccEEEEe
Confidence 555555544
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.7e-27 Score=216.17 Aligned_cols=223 Identities=18% Similarity=0.233 Sum_probs=189.5
Q ss_pred eEEEeccceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-C-CCeEEeeccCCCe-eEEE
Q 046394 18 TWRIKQEAIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-D-GTELHCSKEHGEV-LKLQ 92 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~-~~~~~~~~~~~~~-~~l~ 92 (378)
....+.++.+++|+..+.. ....+.+|...|++++|+|+|.++++|+.|++|+|||. . +..+.++.+|... ++++
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~ 253 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA 253 (456)
T ss_pred EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEE
Confidence 5556678899999997777 77778899999999999999999999999999999996 4 4688999999986 9999
Q ss_pred E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------e-------eecCC
Q 046394 93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------M-------LCHQG 151 (378)
Q Consensus 93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------~-------~~h~~ 151 (378)
| ++++|+.|++|+|||+++++++..+..|.+.|++++|++++.+|++++.|+. . .++..
T Consensus 254 f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 254 FSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred ecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence 9 9999999999999999999999999999999999999999999999999888 1 22333
Q ss_pred --CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-C---CceEEEEecCCC----------ccccCCCCCce
Q 046394 152 --PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-G---HAKTLDFSRKDS----------GDFSGSHNYNR 213 (378)
Q Consensus 152 --~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~---~i~~~~~sp~g~----------~~~~~~~~~~~ 213 (378)
++++++|+|++.++++++.|+.+++||+..+.++..+ + . .+.+...++.|. ..+|+..+...
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 4899999999999999999999999999998887777 2 1 222223344443 47888888888
Q ss_pred EEEeeccC-CcceeeeEEcCCCCeEEEec
Q 046394 214 YMGYSMVK-GYQIGKVSFRPYEDVLGIGH 241 (378)
Q Consensus 214 ~~~~~~~~-~~~v~~~~~sp~g~~l~~~~ 241 (378)
+..+.+ | ...+..+.|+|...++++++
T Consensus 414 ~~~l~~-h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 414 LQRLEG-HSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred hhhhcC-CCCCceeccccCCCcCeeeecC
Confidence 888877 7 78899999999997766655
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=6.8e-26 Score=197.26 Aligned_cols=233 Identities=17% Similarity=0.217 Sum_probs=197.6
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF 93 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~ 93 (378)
...+....++.+.+|++.++.....+..|...+.++.|+|++++|++++.+|.|++||... ..+..+..|... .++.|
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 101 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF 101 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEE
Confidence 4455556689999999999988888999988999999999999999999999999999554 667778888754 88888
Q ss_pred -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394 94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS 154 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~ 154 (378)
++++++.|+.|.+||+.+++....+..|...+.+++|+|++.++++++.++. +..|...|.
T Consensus 102 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~ 181 (289)
T cd00200 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181 (289)
T ss_pred cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc
Confidence 7777777999999999989988888888899999999999999999886665 556778999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCC----------CccccCCCCCceEEEeeccC
Q 046394 155 ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKD----------SGDFSGSHNYNRYMGYSMVK 221 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g----------~~~~~~~~~~~~~~~~~~~~ 221 (378)
+++|+|+++.+++++.|+.|++||+++++.+..+ ...+.++.|+|++ ...+|+.....+...+.. |
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~ 260 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-H 260 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-c
Confidence 9999999999999999999999999998888777 3589999999954 446676666666666666 7
Q ss_pred CcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 222 GYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 222 ~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
...|.++.|+|++.+|++++.+|.+.+|
T Consensus 261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 7889999999999888888887765554
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.7e-27 Score=195.99 Aligned_cols=214 Identities=16% Similarity=0.137 Sum_probs=185.7
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV 109 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~ 109 (378)
....+.+|.+.|.|+++.|-..++++|+.|++|.||| .+|....++.+|... ..+++ ++.+++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 3455789999999999999999999999999999999 677778899999886 88888 9999999999999999
Q ss_pred CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394 110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK 175 (378)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~ 175 (378)
...+.++.+.+|...|.|++.+|.-..|++|+.|.. +.+|..+|.++.+.|..-.++|||.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 999999999999999999999999999999999988 789999999999999777899999999999
Q ss_pred EEEcCCceeeeee---cCCceEEEEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394 176 IWDLRKYEVLQTL---PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM 243 (378)
Q Consensus 176 iwd~~~~~~~~~~---~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 243 (378)
+||++.|+...++ ...+.+++.+|.-.. .-|....+..+..+.+ |..-|+++....|| ++++|+++
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg-h~~iintl~~nsD~-v~~~G~dn 380 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG-HNAIINTLSVNSDG-VLVSGGDN 380 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc-ccceeeeeeeccCc-eEEEcCCc
Confidence 9999999998888 367899999987553 4455555666666666 77888999988775 67777777
Q ss_pred CeEEEEEcC
Q 046394 244 GVSGILIPG 252 (378)
Q Consensus 244 g~~~~~~~~ 252 (378)
|.+.+|..-
T Consensus 381 g~~~fwdwk 389 (460)
T KOG0285|consen 381 GSIMFWDWK 389 (460)
T ss_pred eEEEEEecC
Confidence 766666533
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-27 Score=184.70 Aligned_cols=207 Identities=15% Similarity=0.181 Sum_probs=171.4
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV 109 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~ 109 (378)
....+.+|.++|..+.|+-||+|.++++.|.+|++|+ ..|..++++.+|... ..++. .|++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 4567889999999999999999999999999999999 789999999999864 44444 9999999999999999
Q ss_pred CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394 110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~ 173 (378)
.+|+.++.|.+|.+.|+.++|+.+...+++|+.|.. +......|.++.++ +..+++||.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999988 33345667777775 568999999999
Q ss_pred EEEEEcCCceeeeee-cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCccee--eeEEcCCCCeEEEe
Q 046394 174 IKIWDLRKYEVLQTL-PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIG--KVSFRPYEDVLGIG 240 (378)
Q Consensus 174 i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~--~~~~sp~g~~l~~~ 240 (378)
++.||++.|++..-+ ..+|++++||+||.. .+-+..+++++..+.+ |.+.-+ +.+++.....+++|
T Consensus 167 vRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG-hkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG-HKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred EEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc-cccceeeeeeeecccceeEEec
Confidence 999999999998777 899999999999985 4455667777777777 554433 44555555444444
Q ss_pred cCCCeE
Q 046394 241 HSMGVS 246 (378)
Q Consensus 241 ~~~g~~ 246 (378)
+.||.+
T Consensus 246 SEDG~V 251 (307)
T KOG0316|consen 246 SEDGKV 251 (307)
T ss_pred cCCceE
Confidence 444433
No 30
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=202.00 Aligned_cols=233 Identities=15% Similarity=0.146 Sum_probs=184.8
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE--
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-- 93 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-- 93 (378)
...++.+.||.|++||+....+...+..|.+.|..|+++. ..+++++.|.+|+.|..++.+++++.+......+.-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 3456678899999999999999999999999999999987 578899999999999999988888888776544433
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe---eee----------cCCCEEEE
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT---MLC----------HQGPVSAL 156 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~---~~~----------h~~~v~~~ 156 (378)
.++|||. .|.|||.....++.++......+.++.|+|-.. +|+++..|+. +.. -...-+.|
T Consensus 158 ~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I 235 (433)
T KOG0268|consen 158 KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI 235 (433)
T ss_pred ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence 8888885 499999999999999999999999999999874 6777767777 111 11234678
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCce-eeeee--c-CCceEEEEecCCCccccCCCCC-------------ceEEEeec
Q 046394 157 AFHPNGHLMATSGKDCKIKIWDLRKYE-VLQTL--P-GHAKTLDFSRKDSGDFSGSHNY-------------NRYMGYSM 219 (378)
Q Consensus 157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~-~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~-------------~~~~~~~~ 219 (378)
+|+|++-.|++++.|..++.||++... ++..+ | +.+.++.|||.|.-.+..+.+. ..|.+-.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR- 314 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR- 314 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-
Confidence 999988889999999999999999844 46666 3 6789999999998655443322 2222221
Q ss_pred cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCcc
Q 046394 220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFE 267 (378)
Q Consensus 220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~ 267 (378)
-+.|.+|.||.|. .++++||+|+++++|..+..+
T Consensus 315 --Mq~V~~Vk~S~Ds------------kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 315 --MQHVFCVKYSMDS------------KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred --hheeeEEEEeccc------------cEEEecCCCcceeeeecchhh
Confidence 2568999999999 667778888899999876654
No 31
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=9.4e-27 Score=185.70 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=194.9
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE-
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF- 93 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~- 93 (378)
|-.++..-|.+..+|=..+|+.+-++.+|++.|+|++.+.+.+++++|+.|.++++|| .+|+++..+.....+..+.|
T Consensus 23 DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS 102 (327)
T ss_pred cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence 4455555567777777889999999999999999999999999999999999999999 78899999988877777778
Q ss_pred ----EEEEE-----eCCCeEEEEEcC-------CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394 94 ----LLASI-----NKLGQLRYQNVT-------MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------ 145 (378)
Q Consensus 94 ----~l~s~-----~~d~~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------ 145 (378)
+++.+ +..+.|.++|++ ...++..+..+...++.+-|.|-+..|++|..+|.
T Consensus 103 ~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 103 FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence 33333 234789999998 34568888888899999999999999999999998
Q ss_pred ---eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccc---------------
Q 046394 146 ---MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDF--------------- 205 (378)
Q Consensus 146 ---~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~--------------- 205 (378)
...|...|+.|+++|+..+++|+|.|.+-++||+++.+++.++ ..++++.+++|--.+.+
T Consensus 183 v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~ 262 (327)
T KOG0643|consen 183 VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTST 262 (327)
T ss_pred eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecc
Confidence 3458889999999999999999999999999999999999999 68999999999544311
Q ss_pred ---------cCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 206 ---------SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 206 ---------~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
+..-..+.+...++ |-.||++|+|+|+|...++|+.||.+++..
T Consensus 263 r~GKFEArFyh~i~eEEigrvkG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 263 RAGKFEARFYHLIFEEEIGRVKG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccchhhhHHHHHHHHHhccccc-cccCcceeEECCCCcccccCCCCceEEEEE
Confidence 11111223455667 889999999999999999999999887764
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=183.05 Aligned_cols=230 Identities=15% Similarity=0.179 Sum_probs=172.1
Q ss_pred eeecCCceeeEEEeccceeeeeeccc---ceeeEEe-ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC---CCCeEEe
Q 046394 9 YLEAEGVEKTWRIKQEAIAREVDILS---SRNQYDI-MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR---DGTELHC 81 (378)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~l-~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~---~~~~~~~ 81 (378)
.|+++|.++++++ |+... -.+...+ .+|...|.+++|+|.|++||+||.|.++.||.. +-.++..
T Consensus 29 ilAscg~Dk~vri--------w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~ 100 (312)
T KOG0645|consen 29 ILASCGTDKAVRI--------WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT 100 (312)
T ss_pred EEEeecCCceEEE--------EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee
Confidence 3555555555554 44543 2233333 368899999999999999999999999999983 2356788
Q ss_pred eccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC---cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394 82 SKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG---EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------- 145 (378)
Q Consensus 82 ~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------- 145 (378)
+.+|..- -+++| +||+|+.|..|-||.+..+ .+...+..|...|..+.|+|...+|++++.|.+
T Consensus 101 lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 101 LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence 9999865 99999 9999999999999998743 578888999999999999999999999999988
Q ss_pred ----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEEEEecCCC---------ccc
Q 046394 146 ----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDS---------GDF 205 (378)
Q Consensus 146 ----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~---------~~~ 205 (378)
+.+|...|.+++|+|.|..|++++.|++|+||-+.+. +..+ ...+..+.|. +|. +.+
T Consensus 181 ~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~l 257 (312)
T KOG0645|consen 181 DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--LSGMHSRALYDVPWD-NGVIASGGGDDAIRL 257 (312)
T ss_pred CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--cchhcccceEeeeec-ccceEeccCCCEEEE
Confidence 7789999999999999999999999999999986521 1111 2456666666 333 222
Q ss_pred cCC------CCCceEEEeeccCCcceeeeEEcCC-CCeEEEecCCCeEEEE
Q 046394 206 SGS------HNYNRYMGYSMVKGYQIGKVSFRPY-EDVLGIGHSMGVSGIL 249 (378)
Q Consensus 206 ~~~------~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~~g~~~~~ 249 (378)
+.. .....+......|...|+++.|.|. ...|++|++||.+++|
T Consensus 258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 258 FKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred EEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence 211 1112222222237889999999995 4566666666665555
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=179.19 Aligned_cols=215 Identities=15% Similarity=0.155 Sum_probs=174.1
Q ss_pred eeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCCC-C---eEEee-ccCCCe-eEEEE-----EEEEEeCCCe
Q 046394 36 RNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRDG-T---ELHCS-KEHGEV-LKLQF-----LLASINKLGQ 103 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~~-~---~~~~~-~~~~~~-~~l~~-----~l~s~~~d~~ 103 (378)
..++.+.+|.+.+..++|+|- |..||+||.|..|+||+..+ . +...+ .+|... .+++| +|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346788999999999999998 88999999999999999653 2 22233 356655 99999 9999999999
Q ss_pred EEEEEcCCC--cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCE
Q 046394 104 LRYQNVTMG--EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHL 164 (378)
Q Consensus 104 i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~ 164 (378)
+.||.-..+ +++.++.+|...|.|++|+++|.+||+++.|.. +..|...|-.+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999986644 689999999999999999999999999999988 7889999999999998889
Q ss_pred EEEEECCCeEEEEEcC---Cceeeeee---cCCceEEEEecCCCccccCCCCCce-----EEEeeccCCcceeeeEEcCC
Q 046394 165 MATSGKDCKIKIWDLR---KYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNR-----YMGYSMVKGYQIGKVSFRPY 233 (378)
Q Consensus 165 l~t~~~d~~i~iwd~~---~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~ 233 (378)
|+++|.|++|++|.-. ...+..++ ...+.+++|+|.|...+....+... +..+...|..+++.+.|.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-- 242 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-- 242 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--
Confidence 9999999999999866 35678888 3589999999999764443333221 122333377789999998
Q ss_pred CCeEEEecCCCeEEEEEcC
Q 046394 234 EDVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 234 g~~l~~~~~~g~~~~~~~~ 252 (378)
...||+++.|+.+.++...
T Consensus 243 ~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ccceEeccCCCEEEEEEec
Confidence 4578888888877766543
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=191.30 Aligned_cols=236 Identities=17% Similarity=0.146 Sum_probs=197.9
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQ 92 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~ 92 (378)
.+-+...+.|++++|||+.+++...++.+|-..|..+++|+-..||++++.|+.|+.||+ ..+.++.+.+|-.. .+++
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 344455667889999999999999999999999999999999999999999999999995 45667888999765 8888
Q ss_pred E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE
Q 046394 93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV 153 (378)
Q Consensus 93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v 153 (378)
. .|+||+.|.++++||+++...+..+.+|..+|..+.+.|....+++|+.|++ +..|+..|
T Consensus 243 lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 243 LHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred ccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee
Confidence 7 8999999999999999999999999999999999999999999999999998 67899999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc---------cccCCCCCceEEEeec--
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSM-- 219 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~-- 219 (378)
.+++.+|....||+++.|. |+-|++..|..+..+ ...+++++...||.+ .+|+..++..++....
T Consensus 323 ral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v 401 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV 401 (460)
T ss_pred eEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccc
Confidence 9999999999999999886 899999999998888 367889988888764 5666666655544321
Q ss_pred -----cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 220 -----VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 220 -----~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
.....|++.+|...| .-++++..|.+|++|..
T Consensus 402 qpGSl~sEagI~as~fDktg------------~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTG------------SRLITGEADKTIKMYKE 438 (460)
T ss_pred cCCccccccceeEEeecccC------------ceEEeccCCcceEEEec
Confidence 112346677777777 45566777777888864
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=208.35 Aligned_cols=232 Identities=17% Similarity=0.164 Sum_probs=193.1
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEeeccCCCe-e
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----TELHCSKEHGEV-L 89 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~ 89 (378)
...+..++...++++++.+..+. .+.+|+..|.+++...+|-+|++|+.|.++++|.++. .++....+|... .
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 34445567788999998888775 8999999999999777788999999999999997522 234556788875 7
Q ss_pred EEEE------EEEEEeCCCeEEEEEcCCCc-----EEE----EEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394 90 KLQF------LLASINKLGQLRYQNVTMGE-----IVG----NFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------- 145 (378)
Q Consensus 90 ~l~~------~l~s~~~d~~i~iwd~~~~~-----~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------- 145 (378)
++++ +|+++|.|+++++|++...+ ++. +...|...|+|++++|+..+||+|+.|.+
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 7777 99999999999999997622 111 22357889999999999999999999998
Q ss_pred -----eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCC----------ccccC
Q 046394 146 -----MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDS----------GDFSG 207 (378)
Q Consensus 146 -----~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~----------~~~~~ 207 (378)
+.+|...|.|+.|+|..+.++|+|.|++|+||.+.++.|+.+| | ..|-.+.|-.+|. ..+|+
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 8899999999999999999999999999999999999999999 3 5677777766554 58999
Q ss_pred CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
..+..+..++.. |...|++++-+|.+.++++|+.||.+.+|
T Consensus 576 ikt~eC~~tlD~-H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 576 IKTNECEMTLDA-HNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred ccchhhhhhhhh-ccceeEEEeecCccceeEecCCCeEEEEe
Confidence 999999999999 99999999999999666666555544444
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-26 Score=210.02 Aligned_cols=227 Identities=13% Similarity=0.118 Sum_probs=204.3
Q ss_pred eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----E
Q 046394 22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----L 94 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~ 94 (378)
-..+.|++||..-+..+..+..|+++|.+++|+|++.++++||.|..|+||+ .+.+++.++.+|-+. ..+.| .
T Consensus 28 lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 28 LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence 3478999999999999999999999999999999999999999999999999 567788999999986 77778 9
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------------
Q 046394 95 LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------------------- 145 (378)
Q Consensus 95 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------------------- 145 (378)
++++|+|.+|+||++.+++++..+.+|...|.|..|+|....+++++-|.+
T Consensus 108 IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 108 ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 999999999999999999999999999999999999999999999999987
Q ss_pred --------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee--c-CCceEEEEec-------
Q 046394 146 --------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL--P-GHAKTLDFSR------- 199 (378)
Q Consensus 146 --------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~--~-~~i~~~~~sp------- 199 (378)
+.||...|+-++|+|.--+|++|+.|..|++|-+...+. +.+. | ..|+++-|+|
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS 267 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence 678999999999999999999999999999999876544 2233 3 7899999998
Q ss_pred ---CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 200 ---KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 200 ---~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
|+.+.+|+......+.+++. ...+-+.++-+|..+++|+|++.|++.+-
T Consensus 268 nsEDksirVwDm~kRt~v~tfrr-endRFW~laahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred cCCCccEEEEecccccceeeeec-cCCeEEEEEecCCcceeeeecCCceEEEE
Confidence 45568999999999999877 66779999999999999999999977543
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=9.1e-26 Score=203.24 Aligned_cols=235 Identities=17% Similarity=0.171 Sum_probs=195.1
Q ss_pred eeeEEEeccceeeeeeccc-----------------------cee-----e------EEeecCCCCceEEEEcCCCCEEE
Q 046394 16 EKTWRIKQEAIAREVDILS-----------------------SRN-----Q------YDIMLPELGPYTLDFTSSGRYMA 61 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~-----------------------~~~-----~------~~l~~~~~~v~~~~~sp~g~~l~ 61 (378)
...|.++.||.+.+|.... ++. . +-+......|++.+|++..+.|+
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 3488899999999998761 111 1 11222235689999999999999
Q ss_pred EEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEe-CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCC
Q 046394 62 AAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASIN-KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPF 133 (378)
Q Consensus 62 ~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 133 (378)
+|-.+|...+|. .+-..++.+.-.... ..+.| .+|.|+ .=|.+-||++.+...+....+|...+++++++||
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD 361 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD 361 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence 999999999999 555677888766544 77888 566554 4589999999999999999999999999999999
Q ss_pred CCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cC--CceEE
Q 046394 134 NGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PG--HAKTL 195 (378)
Q Consensus 134 ~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~--~i~~~ 195 (378)
|+++++|+.||. +..|+..|+.+.|+..|+.++++|-||+|+.||+..++..+++ +. ...|+
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 999999999998 7789999999999999999999999999999999999999999 43 45788
Q ss_pred EEecCCCc-----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 196 DFSRKDSG-----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 196 ~~sp~g~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
+..|.|.. .+|+.++++.+-.+.+ |.+||.+++|+|+|.. ++++|.|.+|++|++
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~~~------------LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDGSL------------LASGSWDKTVRIWDI 507 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEccccCe------------EEeccccceEEEEEe
Confidence 88888874 7899999999999999 9999999999999955 455556666666654
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=211.21 Aligned_cols=219 Identities=14% Similarity=0.122 Sum_probs=173.7
Q ss_pred ecccceeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC---------------------------------
Q 046394 31 DILSSRNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--------------------------------- 76 (378)
Q Consensus 31 d~~~~~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------------------------------- 76 (378)
++........+. .|.++|++|.||+||+|||+||.||.|+||.+..
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 334444455666 8999999999999999999999999999998311
Q ss_pred ----------------------------CeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCC
Q 046394 77 ----------------------------TELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLG 123 (378)
Q Consensus 77 ----------------------------~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 123 (378)
.+++.+.+|.+- .++.| +|++++.|.+|++|++....++..|. |.+
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 123446778765 89999 99999999999999999999999995 899
Q ss_pred CeeEEEEcC-CCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-
Q 046394 124 RTDVIRVNP-FNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL- 188 (378)
Q Consensus 124 ~v~~~~~s~-~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~- 188 (378)
.|+|++|+| |.++|++|+-|+. ...-..-|++++|.|||++.+.|+.+|.+++|++...++....
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 999999999 5689999999998 2223478999999999999999999999999999887765444
Q ss_pred ----------cCCceEEEEec-----------CCCccccCCCCCceEEEeeccCC-cceeeeEEcCCCCeEEEecCCCeE
Q 046394 189 ----------PGHAKTLDFSR-----------KDSGDFSGSHNYNRYMGYSMVKG-YQIGKVSFRPYEDVLGIGHSMGVS 246 (378)
Q Consensus 189 ----------~~~i~~~~~sp-----------~g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~~g~~ 246 (378)
+..|+.+.|.| |.++.+++..+..++..+++.+. ..-....|+.||++++++++|..+
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 23588888876 44557777766777766665222 223467899999888877777766
Q ss_pred EEEE
Q 046394 247 GILI 250 (378)
Q Consensus 247 ~~~~ 250 (378)
.+|-
T Consensus 571 YiW~ 574 (712)
T KOG0283|consen 571 YIWK 574 (712)
T ss_pred EEEe
Confidence 6664
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-26 Score=204.41 Aligned_cols=212 Identities=18% Similarity=0.146 Sum_probs=187.8
Q ss_pred eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCc
Q 046394 41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGE 113 (378)
Q Consensus 41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~ 113 (378)
+..++..|.++.|+|...+++++-.+|.|.|||. +...+..+.-..-+ .+..| .+++|++|..|+||+..++.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 4457889999999999999999999999999994 55566777666655 66677 89999999999999999999
Q ss_pred EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEE
Q 046394 114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIW 177 (378)
Q Consensus 114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iw 177 (378)
.+..|..|.+.|.+++.+|...+++++++|-. +.+|...|.+++|+| |.+.||++|-|++|+||
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 99999999999999999999999999999987 889999999999999 77899999999999999
Q ss_pred EcCCceeeeee--c-CCceEEEEecCCC------------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecC
Q 046394 178 DLRKYEVLQTL--P-GHAKTLDFSRKDS------------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHS 242 (378)
Q Consensus 178 d~~~~~~~~~~--~-~~i~~~~~sp~g~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 242 (378)
.+.+..+..++ | ..|+|+.|-+-|. ..+|+-++..++.++.+ |..-|..+.|+|.=+++++|+.
T Consensus 169 slgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG-Ht~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 169 SLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG-HTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred EcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc-ccccceEEEecCCCcEEEEecC
Confidence 99999999999 4 7899999988774 27899999999999999 9999999999999977777777
Q ss_pred CCeEEEEEcCC
Q 046394 243 MGVSGILIPGS 253 (378)
Q Consensus 243 ~g~~~~~~~~s 253 (378)
||.+++|-+.+
T Consensus 248 DGTvriWhs~T 258 (794)
T KOG0276|consen 248 DGTVRIWNSKT 258 (794)
T ss_pred CccEEEecCcc
Confidence 77666665443
No 40
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=189.24 Aligned_cols=223 Identities=16% Similarity=0.123 Sum_probs=165.7
Q ss_pred EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------------------------CeEEe
Q 046394 39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------------------------------------TELHC 81 (378)
Q Consensus 39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------------------------------------~~~~~ 81 (378)
..|++|...|++++||.||.+||+++.|+.|+||+... ..+..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 45789999999999999999999999999999999421 11111
Q ss_pred ecc---------CCC-------------eeEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC
Q 046394 82 SKE---------HGE-------------VLKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP 132 (378)
Q Consensus 82 ~~~---------~~~-------------~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 132 (378)
+.. |.. +.-+.+ ++++++.|..|.+|++. |+.+.++......-+..+.||
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 100 000 000111 89999999999999997 999999988777888899999
Q ss_pred CCCEEEEEcCCCe----------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC----c---e
Q 046394 133 FNGVVSLGHSGGT----------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK----Y---E 183 (378)
Q Consensus 133 ~~~~l~~~~~d~~----------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~----~---~ 183 (378)
+|+++++++-.-. +.+|...|+.++|||+...++|.|.||+++|||+.- + .
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 9999998765333 889999999999999999999999999999999852 1 1
Q ss_pred eeeee-------cCCceEEEEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394 184 VLQTL-------PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG 247 (378)
Q Consensus 184 ~~~~~-------~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~ 247 (378)
.+.+. .+....+.+||.|.. .++..+++..+..+...|+..|.+++|+|+|++++++++.-...
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv 398 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRV 398 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeee
Confidence 22222 344568999999985 33344445555444445888999999999999999998775432
Q ss_pred EEEcCCCCccccccc
Q 046394 248 ILIPGSGEPNFDSWV 262 (378)
Q Consensus 248 ~~~~~s~d~~i~~w~ 262 (378)
+--+-+.+..+..|+
T Consensus 399 ~~ntpg~~~~V~~~~ 413 (420)
T KOG2096|consen 399 IRNTPGWHSRVVKLN 413 (420)
T ss_pred ecCCCchhhHHHHhh
Confidence 222444555566664
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-27 Score=194.84 Aligned_cols=212 Identities=9% Similarity=0.074 Sum_probs=187.8
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV 109 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~ 109 (378)
..+.+.+|...|+.+-|+|+-..+++++.|++|++|| .+|+....+++|... .++.| ++++++.|-.+.+||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 3456778889999999999999999999999999999 788888999999986 99999 9999999999999999
Q ss_pred CC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394 110 TM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKI 174 (378)
Q Consensus 110 ~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i 174 (378)
.+ .+++....+|...|.+++|-|.|.+|++++.|.. +.+|...|..++.+.||.++++++.|.+|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87 5677888899999999999999999999999998 78899999999999999999999999999
Q ss_pred EEEEcCCceeeeee---cCCceEEEEecCC-------------------------CccccCCCCCceEEEeeccCCccee
Q 046394 175 KIWDLRKYEVLQTL---PGHAKTLDFSRKD-------------------------SGDFSGSHNYNRYMGYSMVKGYQIG 226 (378)
Q Consensus 175 ~iwd~~~~~~~~~~---~~~i~~~~~sp~g-------------------------~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (378)
++|-+.++++...+ ..++-+++|-|.. .+.+|+..++.++.++.+ |.+.|.
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr 338 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVR 338 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-ccceee
Confidence 99999998776666 3677788876632 248899999999999999 999999
Q ss_pred eeEEcCCCCeEEEecCCCeEEEE
Q 046394 227 KVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 227 ~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.++|+|.|+||+++.+|+.+++|
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEE
Confidence 99999999888877777755544
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=5.6e-26 Score=204.47 Aligned_cols=227 Identities=12% Similarity=0.179 Sum_probs=193.5
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLA 96 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~ 96 (378)
.+.+.+|+..+.+++.++... -+.+..|.|.++++++|...|.+.+|| .+...+.++++|.+. .+++. .++
T Consensus 393 ~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence 478999999999999999874 788999999999999999999999999 566777888899987 88888 999
Q ss_pred EEeCCCeEEEEEcCC-----CcE--EEEEe-----cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecC
Q 046394 97 SINKLGQLRYQNVTM-----GEI--VGNFW-----TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQ 150 (378)
Q Consensus 97 s~~~d~~i~iwd~~~-----~~~--~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~ 150 (378)
|||.|.+|++||..- |.. +..+. .-...|.|+.+||||.+|+++--|.+ +.||.
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk 550 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK 550 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence 999999999999742 111 11111 13478999999999999999999988 78999
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCC----------CccccCCCCCceEEEe
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKD----------SGDFSGSHNYNRYMGY 217 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g----------~~~~~~~~~~~~~~~~ 217 (378)
-||.||.+|||++.++|||.|.+|+||-+.-|.|-.++ | ..|.++.|-|+. ...-|+......+..+
T Consensus 551 LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 551 LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 99999999999999999999999999999999999888 4 788999998843 3467777778888888
Q ss_pred eccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394 218 SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP 265 (378)
Q Consensus 218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~ 265 (378)
.+ |...|++++.+|+| .+++++|.|.+||+|+...
T Consensus 631 ~~-H~~ev~cLav~~~G------------~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 631 DG-HHSEVWCLAVSPNG------------SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cc-chheeeeeEEcCCC------------CeEEeccCCceeEeeeccC
Confidence 88 88889999999999 5566777777888887543
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=8.6e-27 Score=200.00 Aligned_cols=212 Identities=17% Similarity=0.226 Sum_probs=174.3
Q ss_pred eeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEE
Q 046394 36 RNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRY 106 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~i 106 (378)
+.++++.+|+.+|+++.|.| .+.+|++|+.|+.|+||+ -++.+++++.+|..+ .+++| .|+++|.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56788999999999999999 889999999999999999 358999999999987 99999 9999999999999
Q ss_pred EEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECC
Q 046394 107 QNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKD 171 (378)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d 171 (378)
||+++|+++..|.. ...++|+.|+|++ +.|++|+.|+. +..|-+.|..+.|-++|.++++++.|
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 99999999999864 4678999999999 78999999887 56788999999999999999999999
Q ss_pred CeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCCCC-------------ceEEEeeccC--CcceeeeEEcC
Q 046394 172 CKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSHNY-------------NRYMGYSMVK--GYQIGKVSFRP 232 (378)
Q Consensus 172 ~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~~~-------------~~~~~~~~~~--~~~v~~~~~sp 232 (378)
++++||+.+..-++... .-...++..+|++.+.+...-.. .....+.+ | .+.-..+.|||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSp 442 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSP 442 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcC
Confidence 99999999988776655 24677889999888633221111 11112222 2 23356799999
Q ss_pred CCCeEEEecCCCeEEEE
Q 046394 233 YEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 233 ~g~~l~~~~~~g~~~~~ 249 (378)
||.+|++|+.+|.+.+|
T Consensus 443 DG~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFW 459 (503)
T ss_pred CCCeEEeecCCccEEEe
Confidence 99888777777755544
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.6e-26 Score=201.15 Aligned_cols=225 Identities=11% Similarity=0.123 Sum_probs=201.8
Q ss_pred ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EE
Q 046394 23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LL 95 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l 95 (378)
..|.+++||.++...+.++....-+|.+..|-+..+++++|+.|..|+||+ .++..++.+.+|.+- .+++. ++
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeE
Confidence 468899999999999999999889999999999999999999999999999 678899999999986 88888 99
Q ss_pred EEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCC-CCEEEEEcCCCe--------------eeecCCCEEEEEEe
Q 046394 96 ASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPF-NGVVSLGHSGGT--------------MLCHQGPVSALAFH 159 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~--------------~~~h~~~v~~~~~s 159 (378)
+|+|+|-+|++||.+.. .+.++|.+|...|.+++|+|. .+.+++++-|++ +.+|...|+|+++-
T Consensus 113 LtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy 192 (794)
T KOG0276|consen 113 LTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYY 192 (794)
T ss_pred EecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEec
Confidence 99999999999999865 678999999999999999994 579999999998 78999999999998
Q ss_pred cCC--CEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec----------CCCccccCCCCCceEEEeeccCCcc
Q 046394 160 PNG--HLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR----------KDSGDFSGSHNYNRYMGYSMVKGYQ 224 (378)
Q Consensus 160 p~g--~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp----------~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (378)
|.| -+|+||+.|.+|+|||..+..|+.++ | ..|+.+.|+| ||...+|+..+-.....+.. ...+
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-gleR 271 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-GLER 271 (794)
T ss_pred cCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-CCce
Confidence 844 58999999999999999999999999 4 6788888888 67778888877776666655 6678
Q ss_pred eeeeEEcCCCCeEEEecCCCeEEE
Q 046394 225 IGKVSFRPYEDVLGIGHSMGVSGI 248 (378)
Q Consensus 225 v~~~~~sp~g~~l~~~~~~g~~~~ 248 (378)
|++++-.+.+..+++|.++|.+.+
T Consensus 272 vW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 272 VWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999999996543
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=3.7e-25 Score=218.75 Aligned_cols=228 Identities=14% Similarity=0.156 Sum_probs=180.8
Q ss_pred cceeeeeecccceeeEE-----eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CeEEeeccCCCee
Q 046394 24 EAIAREVDILSSRNQYD-----IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG---------TELHCSKEHGEVL 89 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~-----l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~ 89 (378)
++..++|+..+...... +..|...|.+++|+|+|++||+|+.|+.|+||+... .+...+.++..+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 45667777766554433 345888999999999999999999999999999532 1223344455557
Q ss_pred EEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe-------------eeec
Q 046394 90 KLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT-------------MLCH 149 (378)
Q Consensus 90 ~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~-------------~~~h 149 (378)
+++| ++++++.||+|++||+.+++.+..+..|.+.|.+++|+| ++.+|++|+.|+. ...+
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 7888 799999999999999999999999999999999999997 7899999999997 1123
Q ss_pred CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCce-eeeee--c-CCceEEEEec---------CCCccccCCCC-----
Q 046394 150 QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYE-VLQTL--P-GHAKTLDFSR---------KDSGDFSGSHN----- 210 (378)
Q Consensus 150 ~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~-~~~~~--~-~~i~~~~~sp---------~g~~~~~~~~~----- 210 (378)
...|.++.|++ +|.+|++|+.||.|++||+++.. .+..+ | ..|+++.|.+ |+...+|+...
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc
Confidence 46789999964 79999999999999999998865 45555 3 5788888863 33447777642
Q ss_pred -CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394 211 -YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 211 -~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~ 252 (378)
..++..+.+ |...+..+.|+|++.+|++|+.||.+.+|...
T Consensus 697 ~~~~l~~~~g-h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 697 NETPLHSFMG-HTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCcceEEEcC-CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 245667777 88889999999999999999999988888643
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.2e-27 Score=185.47 Aligned_cols=215 Identities=16% Similarity=0.195 Sum_probs=177.5
Q ss_pred eEEeecCCCCceEEEEcC---CCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEE
Q 046394 38 QYDIMLPELGPYTLDFTS---SGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQ 107 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp---~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iw 107 (378)
.....+|+.+|..++||| +|-+|++++.||.--+-+ -+|.=+-++.+|.+. .+... ..++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 456788999999999985 788999999999887777 677788999999986 55555 77889999999999
Q ss_pred EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394 108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDC 172 (378)
Q Consensus 108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~ 172 (378)
|.-+|..+.+|. |...|.+++|+.|..+|++|+.+.. +.+|.+.|..+-|....+.|++++.|+
T Consensus 87 ~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 87 DAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 999999999885 7788999999999999999998776 789999999999999999999999999
Q ss_pred eEEEEEcCCceeeeee--cCCceEEEEecCCCc---------cc------------------------------------
Q 046394 173 KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG---------DF------------------------------------ 205 (378)
Q Consensus 173 ~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~---------~~------------------------------------ 205 (378)
+||+||.+++..++++ ..+++++.++++|.+ .+
T Consensus 166 tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged 245 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGED 245 (334)
T ss_pred ceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcc
Confidence 9999999999999999 799999999999983 11
Q ss_pred -----cCCCCCceEEEe-eccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394 206 -----SGSHNYNRYMGY-SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF 266 (378)
Q Consensus 206 -----~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~ 266 (378)
++-.++..+..+ ++ |..+|.+|.|+|+|.. +.+||.|++|++|..+|-
T Consensus 246 ~~~~kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE~------------yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 246 FKVYKFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGEL------------YASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eEEEEEeccCCceeeecccC-CCCceEEEEECCCCce------------eeccCCCceEEEEEecCC
Confidence 222333344444 45 7888999999999954 555555556666665543
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=184.97 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=188.5
Q ss_pred ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeecc-CCCeeEEEE-----EE
Q 046394 23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKE-HGEVLKLQF-----LL 95 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~~~~~~l~~-----~l 95 (378)
.|..-.+|++.++.....+.+|...|+++.||.+|.+||||+.+|.|.||. .++.....+.. -.+..-+.| +|
T Consensus 84 gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 84 GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL 163 (399)
T ss_pred CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE
Confidence 355667899999999999999999999999999999999999999999999 55666666652 223344555 89
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------------------
Q 046394 96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------ 145 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------ 145 (378)
+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+
T Consensus 164 lAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred EeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 99999999999999998888899999999999999999999999999998
Q ss_pred ---------------------------ee--------ecCCCEEEEEEec---CCCEEEEEECCCeEEEEEcCCceeeee
Q 046394 146 ---------------------------ML--------CHQGPVSALAFHP---NGHLMATSGKDCKIKIWDLRKYEVLQT 187 (378)
Q Consensus 146 ---------------------------~~--------~h~~~v~~~~~sp---~g~~l~t~~~d~~i~iwd~~~~~~~~~ 187 (378)
.. .+...+.|+.+.| .=.++|+|+.||+|.|||+.+.++.+.
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~ 323 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI 323 (399)
T ss_pred ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence 11 2223334444444 445678999999999999998877777
Q ss_pred e--cCCceEEEEec---------CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 188 L--PGHAKTLDFSR---------KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 188 ~--~~~i~~~~~sp---------~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
+ ..+|..+.|-+ +|....|+.+++++...+.+ |...|.+++++|+++++++++.|+...+|-
T Consensus 324 c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 324 CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG-HQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec-CchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 6 47799998877 56669999999999999999 999999999999998888888887666553
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=205.37 Aligned_cols=212 Identities=19% Similarity=0.219 Sum_probs=174.1
Q ss_pred EEeecC-CCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCC--eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394 39 YDIMLP-ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGT--ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN 108 (378)
Q Consensus 39 ~~l~~~-~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd 108 (378)
..+..| ...|.++.|+|+|+++++++.++.+++|+. .+. .+..+.+|... .+++| ++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 334343 678999999999999999999999999995 344 46677788765 99999 999999999999999
Q ss_pred c-CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394 109 V-TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 109 ~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~ 173 (378)
+ ..+..+.++.+|...|++++|+|+++++++|+.|+. +.+|.+.|++++|+++|++|++++.|+.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 9 556899999999999999999999999999999998 7889999999999999999999999999
Q ss_pred EEEEEcCCce--eeeee----cC-CceEEEEecCCCc----------cccCCCCCceEEEeeccCCc---ceeeeEEcCC
Q 046394 174 IKIWDLRKYE--VLQTL----PG-HAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGY---QIGKVSFRPY 233 (378)
Q Consensus 174 i~iwd~~~~~--~~~~~----~~-~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~ 233 (378)
|+|||+.++. ++..+ .. +++++.|+|+|.+ .+|+.........+.+ |.. .+.+..+++.
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG-HSNLVRCIFSPTLSTG 390 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc-cCCcceeEecccccCC
Confidence 9999999999 55666 23 6899999999986 5666666666666666 433 4455556677
Q ss_pred CCeEEEecCCCeEEEEEc
Q 046394 234 EDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 234 g~~l~~~~~~g~~~~~~~ 251 (378)
|.++++|+.|+.+.+|..
T Consensus 391 ~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred CCeEEEEeCCceEEEEeC
Confidence 766665555555544443
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.6e-27 Score=190.83 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=171.2
Q ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEE--------eeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394 45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELH--------CSKEHGEV-LKLQF-----LLASINKLGQLRYQNV 109 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~--------~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~ 109 (378)
...+-|..|||||+||++|+.||-|.+|| .+|.... .+.-+..+ .|+.| .+++|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 35688999999999999999999999999 5554332 23344554 89999 9999999999999999
Q ss_pred CCCcEEEEEe-cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394 110 TMGEIVGNFW-TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKI 174 (378)
Q Consensus 110 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i 174 (378)
.+|++++.|. .|...|+|+.||.|+..+++++.|.. +.+|...|+...|+++|+++++++.||+|
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 9999999997 68899999999999999999999887 88999999999999999999999999999
Q ss_pred EEEEcCCceeeeee-----cCCceEEEEecCCCc--cccCCC--------CCceEEEeec--cCCcceeeeEEcCCCCeE
Q 046394 175 KIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG--DFSGSH--------NYNRYMGYSM--VKGYQIGKVSFRPYEDVL 237 (378)
Q Consensus 175 ~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~--~~~~~~--------~~~~~~~~~~--~~~~~v~~~~~sp~g~~l 237 (378)
++|+..+.+|+.++ ..+++++..-|...- .+.+.. .++.+..+.. ..++..-+...||.|.++
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWI 452 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEE
Confidence 99999999999998 256788887776543 111111 2223333321 123345567889999999
Q ss_pred EEecCCCeEEEEE--cCCCCcccccc
Q 046394 238 GIGHSMGVSGILI--PGSGEPNFDSW 261 (378)
Q Consensus 238 ~~~~~~g~~~~~~--~~s~d~~i~~w 261 (378)
.+.+.|+....|. +|.-+.++.+-
T Consensus 453 YcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred EEEccCcEEEEEEeecCceeeeeecc
Confidence 9999999775543 44444554444
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.2e-26 Score=179.50 Aligned_cols=218 Identities=14% Similarity=0.185 Sum_probs=175.9
Q ss_pred EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EeeccCCCe-eEEEE------EEEEEeCCCeEEEEE
Q 046394 39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL---HCSKEHGEV-LKLQF------LLASINKLGQLRYQN 108 (378)
Q Consensus 39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd 108 (378)
..+.+|...|.+++|+.+|..|++|+.|+++.+|++..... ...++|.+. -.++| +|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45677888999999999999999999999999999654322 345677754 77777 999999999999999
Q ss_pred cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------------------------
Q 046394 109 VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------------------- 145 (378)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------------------- 145 (378)
+++++++..+....+ -.-++|+|+|.++++++.|..
T Consensus 94 ~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 999999988865433 446899999999999988776
Q ss_pred ------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc-------
Q 046394 146 ------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG------- 203 (378)
Q Consensus 146 ------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~------- 203 (378)
+.+|+....||.|+|+|++||+|+.|..+.+||+...-|++.+ .-+|..++||.||++
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence 6789988999999999999999999999999999988887777 579999999999997
Q ss_pred ---cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccccc
Q 046394 204 ---DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWV 262 (378)
Q Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~ 262 (378)
++....++..+.... +.++.+.|+|+|...+||.+.+|..- .+.-..++++++-
T Consensus 253 h~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~~---d~~reag~vKiFG 309 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKDG---DSNREAGTVKIFG 309 (313)
T ss_pred ceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCCC---ccccccceeEEec
Confidence 344455555554443 57889999999999999988776521 1222335566653
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=5.5e-27 Score=201.18 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=187.0
Q ss_pred EEEeccceeeeeeccc-ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE---
Q 046394 19 WRIKQEAIAREVDILS-SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF--- 93 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~-~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~--- 93 (378)
++...|+.|++|++-. +.++.++.+|..+|..++|+.+|..++++|.|+.|++|| .+|.++..+....-++++.|
T Consensus 231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd 310 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPD 310 (503)
T ss_pred EecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCC
Confidence 3445567777777766 889999999999999999999999999999999999999 67888777766555699999
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEE
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSA 155 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~ 155 (378)
.|++|+.|+.|+.||+++++.++.+..|.+.|..+.|-++|..++++++++. ...+.....+
T Consensus 311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~ 390 (503)
T KOG0282|consen 311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC 390 (503)
T ss_pred CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc
Confidence 8999999999999999999999999999999999999999999999999998 2223345578
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCceee---eee-----cCCceEEEEecCCCc----------cccCCCCCceEEEe
Q 046394 156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVL---QTL-----PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGY 217 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~---~~~-----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~ 217 (378)
+..+|++.+++.-+.|+.|.||.+...-.+ ..+ .+....+.|||||.+ .+|+..+...+..+
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence 999999999999999999999987542222 122 356688999999987 55666666667777
Q ss_pred eccCCcceeeeEEcCCCC-eEEEecCCCeEEE
Q 046394 218 SMVKGYQIGKVSFRPYED-VLGIGHSMGVSGI 248 (378)
Q Consensus 218 ~~~~~~~v~~~~~sp~g~-~l~~~~~~g~~~~ 248 (378)
.. |..++..+.|+|... .+|+|+-+|.+.+
T Consensus 471 ka-h~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 471 KA-HDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred cc-CCcceEEEEecCCCcceeEecccCceeEe
Confidence 77 889999999999874 4455555554433
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-26 Score=193.66 Aligned_cols=217 Identities=14% Similarity=0.093 Sum_probs=173.9
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-C-CC--CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEE
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-R-DG--TELHCSKEHGEV-LKLQF-----LLASINKLGQLRY 106 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~-~~--~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~i 106 (378)
....+..|...|+-+.||++|+|||+++.|.+..+|. . ++ ...+++.+|..+ ..+.| ++++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 3456788999999999999999999999999999999 2 22 235778888876 88999 9999999999999
Q ss_pred EEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe--eeec------------CCCEEEEEEecCCCEEEEEECC
Q 046394 107 QNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT--MLCH------------QGPVSALAFHPNGHLMATSGKD 171 (378)
Q Consensus 107 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~--~~~h------------~~~v~~~~~sp~g~~l~t~~~d 171 (378)
||+.+|.....+... ...+.+++|.|||..+++|+.|+. +..+ ...|.+++.++||+++++.+.|
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 999999998887643 578999999999999999999988 1111 2347888888899888888888
Q ss_pred CeEEEEEcCCceeeeee--cCCceEEEEecCCC-----------------------------------------------
Q 046394 172 CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS----------------------------------------------- 202 (378)
Q Consensus 172 ~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~----------------------------------------------- 202 (378)
..|++|+..+......+ +.+++++++|.||+
T Consensus 376 ~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 88888888765554434 67788888888776
Q ss_pred --------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394 203 --------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP 265 (378)
Q Consensus 203 --------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~ 265 (378)
..+|....+.++..+.| |...|++|+|+|... ..++++++|++||+|...+
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVswNP~~p-----------~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVSWNPADP-----------EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecC-CcceeeEEecCCCCH-----------HHhhccCCCCeEEEecCCc
Confidence 27788888888888888 888999999999875 3355556666677775543
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=9.2e-25 Score=190.09 Aligned_cols=213 Identities=21% Similarity=0.263 Sum_probs=178.4
Q ss_pred EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394 39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM 111 (378)
Q Consensus 39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~ 111 (378)
..+.+|...|.+++|+|++++|++++.+|.|.+|+. .+.....+..|... ..+.| .+++++.|+.|.+||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 456789999999999999999999999999999995 45566777778766 68888 899999999999999998
Q ss_pred CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394 112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIW 177 (378)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw 177 (378)
++.+..+..+...+.++.|+|++.++++++.++. +..|...|.+++|+|++.++++++.|+.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 8888888888889999999999999998886766 44588889999999999999888889999999
Q ss_pred EcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394 178 DLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 178 d~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
|+++++++..+ + ..+.++.|+|++.. .+|+......+..+.. |...+.++.|+|++.++++++.+|
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-cCCceEEEEEcCCCcEEEEEcCCC
Confidence 99988888777 3 58999999998753 5566555566655555 677899999999988888877777
Q ss_pred eEEEEEcC
Q 046394 245 VSGILIPG 252 (378)
Q Consensus 245 ~~~~~~~~ 252 (378)
.+.+|...
T Consensus 242 ~i~i~~~~ 249 (289)
T cd00200 242 TIRVWDLR 249 (289)
T ss_pred cEEEEEcC
Confidence 66666543
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=2.7e-27 Score=195.38 Aligned_cols=229 Identities=13% Similarity=0.150 Sum_probs=188.6
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ 92 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~ 92 (378)
.++.++..-|++|++||..+......+.+|++.|.|+.|. .+.|++|++|.+|+||| .+|+++.++.+|.+. ..+.
T Consensus 207 D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR 284 (499)
T ss_pred chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence 5677777888999999999999999999999999999997 55999999999999999 688999999999876 9999
Q ss_pred E---EEEEEeCCCeEEEEEcCCCc---EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394 93 F---LLASINKLGQLRYQNVTMGE---IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP 152 (378)
Q Consensus 93 ~---~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~ 152 (378)
| +++|++.|.++.+||+.... +.+.+.+|...|+.+.|+.. ++++++.|.+ +.+|...
T Consensus 285 f~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRG 362 (499)
T KOG0281|consen 285 FSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRG 362 (499)
T ss_pred EeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhccccc
Confidence 9 99999999999999997654 33456688899999998755 9999999998 7789999
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec--------CCCccccCCCCCc---------
Q 046394 153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR--------KDSGDFSGSHNYN--------- 212 (378)
Q Consensus 153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp--------~g~~~~~~~~~~~--------- 212 (378)
|.|+.+ .|+++++||.|.+|++||+..|.+++.+ | .-|.++.|.. ||+..+|+.....
T Consensus 363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~ 440 (499)
T KOG0281|consen 363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTL 440 (499)
T ss_pred ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccch
Confidence 988887 5889999999999999999999999998 3 5688888865 6777888754332
Q ss_pred eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394 213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN 264 (378)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~ 264 (378)
++..... |.+.|..+.|..- -+++.+.|.+|-+|+..
T Consensus 441 Cl~~lv~-hsgRVFrLQFD~f--------------qIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 441 CLRTLVE-HSGRVFRLQFDEF--------------QIISSSHDDTILIWDFL 477 (499)
T ss_pred HHHhhhh-ccceeEEEeecce--------------EEEeccCCCeEEEEEcC
Confidence 2222333 7778999999643 24455556667777753
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=181.05 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=176.9
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE--LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN 108 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd 108 (378)
.+..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|+..+.+ ...+.+|.+. ..+.| .++++|.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455678999999999999999999999999999999966544 5678899987 99999 999999999999999
Q ss_pred cCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394 109 VTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKI 174 (378)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i 174 (378)
+++|+.+..+..|..-++.+.-+.-|. ++.+++.|++ .......++++.|..++..+.+|+-|+.|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 999999999999999999999666664 6667778887 22236789999999999999999999999
Q ss_pred EEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCC----CceEEEeecc-CC--cceeeeEEcCCC
Q 046394 175 KIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHN----YNRYMGYSMV-KG--YQIGKVSFRPYE 234 (378)
Q Consensus 175 ~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~----~~~~~~~~~~-~~--~~v~~~~~sp~g 234 (378)
++||++....++++ ..+|+.+..+|+|.+ .+|+.+. ..++..+.++ |. .....++|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999999 378999999999986 3333222 1223444331 21 234678999999
Q ss_pred CeEEEecCCCeEEEEEcCC
Q 046394 235 DVLGIGHSMGVSGILIPGS 253 (378)
Q Consensus 235 ~~l~~~~~~g~~~~~~~~s 253 (378)
..+.+|+.|..+.+|.+.+
T Consensus 279 ~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CccccccccceEEEeeccc
Confidence 8888888887777666544
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=182.02 Aligned_cols=152 Identities=16% Similarity=0.267 Sum_probs=141.8
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV 109 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~ 109 (378)
.+..|..|...|++++.+|+.++++||+.|..-++|+ .+|..+..+.+|... +++.| +||||+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 4568899999999999999999999999999999999 577778889999986 99999 9999999999999999
Q ss_pred CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394 110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK 175 (378)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~ 175 (378)
.++.....+...-..+.-+.|+|-+.+|+.|+.||. +.+|+.++++=.|.|+|+.++++..||+|+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 999988888766688999999999999999999998 789999999999999999999999999999
Q ss_pred EEEcCCceeeeee
Q 046394 176 IWDLRKYEVLQTL 188 (378)
Q Consensus 176 iwd~~~~~~~~~~ 188 (378)
+||+.++.+++.+
T Consensus 216 ~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 216 VWNPKTGQPLHKI 228 (399)
T ss_pred EEecCCCceeEEe
Confidence 9999999998887
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=177.44 Aligned_cols=205 Identities=16% Similarity=0.257 Sum_probs=170.6
Q ss_pred EEEeccceeeeeecccceeeEEee--cCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe-eEEE
Q 046394 19 WRIKQEAIAREVDILSSRNQYDIM--LPELGPYTLDFTSSG-RYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV-LKLQ 92 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~~~~~~l~--~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~-~~l~ 92 (378)
|-+-..|.+.+.++...+-+..+. .-..+++.++||++. +.+++++.||++++|| ....+++.++.|... .++.
T Consensus 32 yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svd 111 (311)
T KOG0277|consen 32 YGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVD 111 (311)
T ss_pred cccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEec
Confidence 445566888888886444333332 124789999999965 6888999999999999 456789999999864 8999
Q ss_pred E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCC-CCEEEEEcCCCe--------------eeecCC
Q 046394 93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPF-NGVVSLGHSGGT--------------MLCHQG 151 (378)
Q Consensus 93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~--------------~~~h~~ 151 (378)
| .+++++.|++|++|+...++.+++|.+|...|....|+|. .+++++++.|+. +..|..
T Consensus 112 wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~ 191 (311)
T KOG0277|consen 112 WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS 191 (311)
T ss_pred cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc
Confidence 8 7888899999999999999999999999999999999995 479999999998 678999
Q ss_pred CEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEE
Q 046394 152 PVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSF 230 (378)
Q Consensus 152 ~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (378)
.|.++.|+. +.+.++||+.|+.|++||+++. ..++..+.+ |+-.|..+.|
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~----------------------------r~pl~eL~g-h~~AVRkvk~ 242 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNL----------------------------RTPLFELNG-HGLAVRKVKF 242 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhc----------------------------cccceeecC-CceEEEEEec
Confidence 999999998 7778999999999999999873 345667777 9999999999
Q ss_pred cCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 231 RPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 231 sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
||... .++++++.|.++++|+.
T Consensus 243 Sph~~-----------~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 243 SPHHA-----------SLLASASYDMTVRIWDP 264 (311)
T ss_pred Ccchh-----------hHhhhccccceEEeccc
Confidence 99864 45667777778888864
No 58
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=4.4e-27 Score=197.73 Aligned_cols=205 Identities=18% Similarity=0.260 Sum_probs=171.1
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF 118 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~ 118 (378)
.+|..+.|.|+|+.|++|+..|.+.+|+..... ...+++|..+ .++.| .+++|+.+|.|++|+..... +..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHh
Confidence 478999999999999999999999999954322 2456889887 99999 99999999999999985443 4444
Q ss_pred ecC-CCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce
Q 046394 119 WTG-LGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE 183 (378)
Q Consensus 119 ~~~-~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~ 183 (378)
..| ...|.+++|+|....|+++++||. +.+|.-.|.+++|+|.-.+++++|.|+.|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 444 489999999999999999999999 78999999999999998899999999999999999999
Q ss_pred eeeee---cCCceEEEEecCCCcccc----------CCCCCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCeEEEE
Q 046394 184 VLQTL---PGHAKTLDFSRKDSGDFS----------GSHNYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGVSGIL 249 (378)
Q Consensus 184 ~~~~~---~~~i~~~~~sp~g~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~~~~~ 249 (378)
++.++ ...|..+.|+|++.+.+. +.+....++.+++ |..-|+++.|+|-. .+|++|+.||.+.+|
T Consensus 256 cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-HKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-chhhheeeccccccccceeeccCCCceEEE
Confidence 99999 378999999999986443 4444444556667 88899999999976 466777777776666
Q ss_pred EcC
Q 046394 250 IPG 252 (378)
Q Consensus 250 ~~~ 252 (378)
..+
T Consensus 335 ~v~ 337 (464)
T KOG0284|consen 335 VVG 337 (464)
T ss_pred ecc
Confidence 544
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=5.8e-25 Score=190.21 Aligned_cols=236 Identities=15% Similarity=0.151 Sum_probs=182.7
Q ss_pred ceeeEEEeccceeeeeecccceee----EEe-ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEee-------
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQ----YDI-MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCS------- 82 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~----~~l-~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~------- 82 (378)
.-+++..+-|..|+.||+...... ..| ......|.++.||+.|..|++.+.....+|+|.+|..+..+
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 567888899999999999655321 112 22334789999999999999888888999999888665332
Q ss_pred ------ccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcE-EEEEec-----CCCCeeEEEEcCCCCEEEEEcCC
Q 046394 83 ------KEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEI-VGNFWT-----GLGRTDVIRVNPFNGVVSLGHSG 143 (378)
Q Consensus 83 ------~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~-~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d 143 (378)
++|... ++.+| .|+|++.||+++|||+...+. ...+.. ..-+++.++|+|+|.+||+|..|
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D 338 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD 338 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence 456655 88899 899999999999999986542 333332 23468899999999999999999
Q ss_pred Ce-----------------eeecCC--CEEEEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee-----cCCceEEEEe
Q 046394 144 GT-----------------MLCHQG--PVSALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL-----PGHAKTLDFS 198 (378)
Q Consensus 144 ~~-----------------~~~h~~--~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~-----~~~i~~~~~s 198 (378)
|. -.+|.. .|+||.||++|++|++-|.|+++++||++.. +++... ..+-+.++||
T Consensus 339 GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 339 GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred CceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 98 346776 8999999999999999999999999999984 456555 3567889999
Q ss_pred cCCCc----------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 199 RKDSG----------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 199 p~g~~----------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
|+.+. .+++..+...++.... ....|..+.|+|-=+.+.+|+.||.+.++..
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 98775 3334444444455544 5677889999999888888888888777653
No 60
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.8e-25 Score=189.23 Aligned_cols=198 Identities=16% Similarity=0.230 Sum_probs=172.9
Q ss_pred CCCCCCCeeecCCceeeEEEe-ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC------
Q 046394 2 LMPSEGGYLEAEGVEKTWRIK-QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR------ 74 (378)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~------ 74 (378)
.+|....-|.+......+..+ -.+.+++|.+.+|..+..+..|-..|+|+.|+-||.+|++||.||.|.+|.+
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 355555556655555555555 6899999999999999999999999999999999999999999999999983
Q ss_pred ----CCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394 75 ----DGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 75 ----~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 142 (378)
+-.+++.+..|.-+ +++.. .++|+|.|.++++||+..|..+.++. .+..+.+++.+|-+..+++|+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence 23567888889865 77766 99999999999999999999888875 4688999999999999999999
Q ss_pred CCe------------------------------eeecCC--CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--
Q 046394 143 GGT------------------------------MLCHQG--PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-- 188 (378)
Q Consensus 143 d~~------------------------------~~~h~~--~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-- 188 (378)
+|. +.+|.+ +|+|++++-||.+|++|+.||.|+|||+.+.++++++
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 998 678888 9999999999999999999999999999999999988
Q ss_pred -cCCceEEEEecC
Q 046394 189 -PGHAKTLDFSRK 200 (378)
Q Consensus 189 -~~~i~~~~~sp~ 200 (378)
.++|+.+.+.|-
T Consensus 318 ~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 318 SKGPVTNLQINPL 330 (476)
T ss_pred hccccceeEeecc
Confidence 589999998664
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.2e-23 Score=208.14 Aligned_cols=216 Identities=14% Similarity=0.137 Sum_probs=171.7
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF 93 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~ 93 (378)
...+..+.|+.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||. .+..+..+..+..+.++.|
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~ 625 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 625 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence 3455667799999999999999999999999999999997 7899999999999999994 5677777777666688887
Q ss_pred ------EEEEEeCCCeEEEEEcCCCc-EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------e
Q 046394 94 ------LLASINKLGQLRYQNVTMGE-IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------M 146 (378)
Q Consensus 94 ------~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~ 146 (378)
+|++|+.|+.|++||++++. ++..+.+|...|.++.|. ++.+|++++.|+. +
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 89999999999999998765 567778899999999997 7788999999887 3
Q ss_pred eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCccee
Q 046394 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIG 226 (378)
Q Consensus 147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (378)
.+|...+.+++|+|++.+|++|+.|+.|+||+.....++..+ .+...+ ... -..... +...|.
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~-------~~~~~~--------~~~-~~~~~~-~~~~V~ 767 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY-------KFKTID--------PVS-GLEVDD-ASQFIS 767 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE-------ecccCC--------ccc-ccccCC-CCcEEE
Confidence 457788899999999999999999999999998765544332 000000 000 001122 456799
Q ss_pred eeEEcCCCCeEEEecCCCeEEEE
Q 046394 227 KVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 227 ~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
+++|+|++..|++|+.+|.+.+|
T Consensus 768 ~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 768 SVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999888877777765554
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=170.16 Aligned_cols=219 Identities=14% Similarity=0.098 Sum_probs=184.8
Q ss_pred ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EE
Q 046394 23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LL 95 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l 95 (378)
.+.++++|+...+..+.+..+|...|..++.+.|...+++|+.|..|.+|| .+|+.++.+++|.+. +.+.| .+
T Consensus 37 sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv 116 (307)
T KOG0316|consen 37 SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVV 116 (307)
T ss_pred CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEE
Confidence 355677788999999999999999999999999999999999999999999 688899999999986 99999 99
Q ss_pred EEEeCCCeEEEEEcCC--CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecC
Q 046394 96 ASINKLGQLRYQNVTM--GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPN 161 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~ 161 (378)
++|+.|.++++||.++ .++++.+....+.|.++..+ +..|++|+.||. ......+|+++.|+++
T Consensus 117 ~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d 194 (307)
T KOG0316|consen 117 ASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKD 194 (307)
T ss_pred EeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCC
Confidence 9999999999999986 46888888778888888765 567999999998 1123568999999999
Q ss_pred CCEEEEEECCCeEEEEEcCCceeeeee--cC-------------CceEEEEecCCCccccCCCCCceEEEeeccCCcc-e
Q 046394 162 GHLMATSGKDCKIKIWDLRKYEVLQTL--PG-------------HAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQ-I 225 (378)
Q Consensus 162 g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~-------------~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~-v 225 (378)
|+..+.++.|++|++.|-.+|+++..+ |. .-.-+.-|.||...+|+......+..+.. +... |
T Consensus 195 ~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~~v~v 273 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VSTVIV 273 (307)
T ss_pred CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CCceeE
Confidence 999999999999999999999998777 11 11223446788899999988888888876 5665 8
Q ss_pred eeeEEcCCCCeEEEecCCC
Q 046394 226 GKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 226 ~~~~~sp~g~~l~~~~~~g 244 (378)
++++++|.-.-|.++...+
T Consensus 274 ~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 274 TDLSCHPTMDDFITATGHG 292 (307)
T ss_pred EeeecccCccceeEecCCc
Confidence 9999999987666666555
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=4.5e-26 Score=188.17 Aligned_cols=200 Identities=16% Similarity=0.218 Sum_probs=173.0
Q ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
..+|+|+.+. ...+++|..|.+|.||| .+-.++..+.+|++. .|+.| .+++|+.|.+|++||+.+|+++.++-
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh
Confidence 4689999986 44799999999999999 556778899999987 99999 99999999999999999999999999
Q ss_pred cCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 120 TGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 120 ~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
.|...|..+.|+ +.++++++.|.. +.+|...|+.+.|+ .++++++|.|.+|++|++.++
T Consensus 275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 999999999987 568999999887 78999999999996 559999999999999999999
Q ss_pred eeeeee--c-CCceEEEE--------ecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 183 EVLQTL--P-GHAKTLDF--------SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 183 ~~~~~~--~-~~i~~~~~--------sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
++++++ | ..|.|+.+ |.|..+.+|+...+.++..+.+ |..-|.++.|... -+++
T Consensus 351 efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeG-HEeLvRciRFd~k--------------rIVS 415 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRFDNK--------------RIVS 415 (499)
T ss_pred eeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhc-hHHhhhheeecCc--------------eeee
Confidence 999999 3 55666544 5566779999999999999999 9999999999643 2567
Q ss_pred CCCCcccccccCCC
Q 046394 252 GSGEPNFDSWVANP 265 (378)
Q Consensus 252 ~s~d~~i~~w~~~~ 265 (378)
|..|+.|++|+...
T Consensus 416 GaYDGkikvWdl~a 429 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQA 429 (499)
T ss_pred ccccceEEEEeccc
Confidence 77777888888644
No 64
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.9e-23 Score=191.24 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=150.7
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCC-C--------CeEEeeccCCCe-eEEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRD-G--------TELHCSKEHGEV-LKLQ 92 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~-~--------~~~~~~~~~~~~-~~l~ 92 (378)
.+.+++|+......+..+.+|...|.+++|+|+ +.+||+|+.||.|+|||+. + .++..+.+|... .+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 467899998888888899999999999999997 7899999999999999953 2 134467888875 9999
Q ss_pred E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394 93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP 152 (378)
Q Consensus 93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~ 152 (378)
| ++++++.|++|+|||+.+++.+..+. +...|.+++|+|+|.+|++++.|+. +.+|.+.
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 9 56899999999999999998877775 5578999999999999999988876 5577776
Q ss_pred EEEE-----EEecCCCEEEEEECCC----eEEEEEcCC-ceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCC
Q 046394 153 VSAL-----AFHPNGHLMATSGKDC----KIKIWDLRK-YEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKG 222 (378)
Q Consensus 153 v~~~-----~~sp~g~~l~t~~~d~----~i~iwd~~~-~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~ 222 (378)
+.+. .|++++.+|+|++.|+ +|+|||+++ ..++.. ..+.. +.
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~---------------------------~~ld~-~~ 263 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT---------------------------MSIDN-AS 263 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE---------------------------EEecC-Cc
Confidence 5432 3458888999888774 799999985 222211 11211 22
Q ss_pred cceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 223 YQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
..+......++|.++++|..|+.+++|-.
T Consensus 264 ~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 264 APLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 33333444556877777777777777754
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=9.9e-24 Score=194.53 Aligned_cols=235 Identities=16% Similarity=0.184 Sum_probs=196.9
Q ss_pred ceeeEEEeccceeeeeecccceeeEE-eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYD-IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKL 91 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~-l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l 91 (378)
.+..+....+.+|++||..++..+.. +.+|.++|.++++...+.+|++|+.|.+++||| .+|.+.+++.+|... .++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 34566677789999999999999988 999999999999988778999999999999999 789999999999987 777
Q ss_pred EE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394 92 QF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS 154 (378)
Q Consensus 92 ~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~ 154 (378)
.. .+++|+.|.+|++|++.++.++..+.+|.++|.++.++ +.++++|+.|+. +.+|.+.|.
T Consensus 298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 77 88889999999999999999999999999999999999 899999999997 788999999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee--c-CCceEEEE--------ecCCCccccCCCCCceEEEeeccCC
Q 046394 155 ALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL--P-GHAKTLDF--------SRKDSGDFSGSHNYNRYMGYSMVKG 222 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~-~~i~~~~~--------sp~g~~~~~~~~~~~~~~~~~~~~~ 222 (378)
++.+.+. ..+++|+.|++|++||+++. +++.++ + .-+..+.+ +.||...+|+.....+.....+.|.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~ 454 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHV 454 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCc
Confidence 9988765 79999999999999999999 899888 3 33333333 4577889999999999888876444
Q ss_pred cceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394 223 YQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF 266 (378)
Q Consensus 223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~ 266 (378)
..|+.+.+. ...+ +..+.|+++.+|++...
T Consensus 455 ~~v~~l~~~--~~~i------------l~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 455 GGVSALALG--KEEI------------LCSSDDGSVKLWDLRSG 484 (537)
T ss_pred ccEEEeecC--cceE------------EEEecCCeeEEEecccC
Confidence 567777765 2333 34445556666665443
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3e-24 Score=179.30 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=175.8
Q ss_pred ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEcCCC
Q 046394 42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNVTMG 112 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~~~~ 112 (378)
..|+..|.++... +.+|++|++||.+++||..|.....+.+|.++ .+++| .|++++.|.++++|-++.+
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 3567788888877 67999999999999999999999999999998 77777 6999999999999998876
Q ss_pred cE----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------------------------------eeec
Q 046394 113 EI----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------------------------------MLCH 149 (378)
Q Consensus 113 ~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------------------------------~~~h 149 (378)
.. +....+|...|.++...++|..+++|+.|.. +.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 53 3334489999999999999999999999887 7899
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc----------cccCCCCC---ceE
Q 046394 150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNY---NRY 214 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~---~~~ 214 (378)
..+|.++.|++ ...++++|.|.+|+.||+.++.++.++ ....+++.++|.... .+|+.+.+ .+.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence 99999999998 568999999999999999999998888 578899999886553 66766443 345
Q ss_pred EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394 215 MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN 264 (378)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~ 264 (378)
+.+.+ |.+.|.++.|+|... ..|++|+.|+++++||..
T Consensus 339 ~s~~g-H~nwVssvkwsp~~~-----------~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 339 QSLIG-HKNWVSSVKWSPTNE-----------FQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred Eeeec-chhhhhheecCCCCc-----------eEEEEEecCCeEEEEEec
Confidence 66777 889999999999986 346677777777778753
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=2.7e-24 Score=179.50 Aligned_cols=203 Identities=13% Similarity=0.188 Sum_probs=163.3
Q ss_pred eEEEeccceeeeeecccceee----EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-------------------
Q 046394 18 TWRIKQEAIAREVDILSSRNQ----YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR------------------- 74 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~----~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~------------------- 74 (378)
++..+.|.++.+|-+..+... ....+|..+|-+++..++|..+++|+.|..|.||+.
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 344445555555555555432 233499999999999999999999999999999992
Q ss_pred -------CCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394 75 -------DGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 75 -------~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 142 (378)
.+.++.++.+|.++ .++.| .+++++.|.+|+.||+.++..+.++.. ...++|+.++|...+|++|+.
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCC
Confidence 12356778999987 99999 999999999999999999999888764 478999999999999999999
Q ss_pred CCe-----------------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCcc
Q 046394 143 GGT-----------------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGD 204 (378)
Q Consensus 143 d~~-----------------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~ 204 (378)
|.. +.+|++.|.++.|+|. ...|++++.|+++++||+|+
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS----------------------- 377 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS----------------------- 377 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc-----------------------
Confidence 987 8899999999999995 45689999999999999997
Q ss_pred ccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 205 FSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
...+++...+ |...|.++.|... .. +++|+.|.+++++..
T Consensus 378 -----~k~plydI~~-h~DKvl~vdW~~~-~~------------IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 378 -----TKAPLYDIAG-HNDKVLSVDWNEG-GL------------IVSGGADNKLRIFKG 417 (423)
T ss_pred -----CCCcceeecc-CCceEEEEeccCC-ce------------EEeccCcceEEEecc
Confidence 4456667777 8889999999854 33 455556666666543
No 68
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=5.4e-23 Score=189.31 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=117.5
Q ss_pred EeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCC--------CeEEeeccCCCe-eEEEE------EEEEEeCCCe
Q 046394 40 DIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDG--------TELHCSKEHGEV-LKLQF------LLASINKLGQ 103 (378)
Q Consensus 40 ~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~-~~l~~------~l~s~~~d~~ 103 (378)
.+.+|.+.|.+++|+| ++++|++|+.||+|++||+.. .++..+.+|... .+++| +|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 889999999999999999532 346778899875 89999 7999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC-EEEEEEecCCCEEEEE
Q 046394 104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP-VSALAFHPNGHLMATS 168 (378)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~-v~~~~~sp~g~~l~t~ 168 (378)
|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+. +.+|.+. +..+.|+|++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999998888888888888888888888888888877 3456543 3456778877777665
Q ss_pred E----CCCeEEEEEcCCc
Q 046394 169 G----KDCKIKIWDLRKY 182 (378)
Q Consensus 169 ~----~d~~i~iwd~~~~ 182 (378)
+ .|+.|++||+++.
T Consensus 230 G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ecCCCCCCeEEEEeCCCC
Confidence 4 3678888888763
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=173.66 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=164.9
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEE
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQ 107 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iw 107 (378)
..|.+..|.+++++++.+ |.++|+||.|-+|+|||+ ....+..+-.|.+. +++.| .|++|+.||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 478889999999999987 889999999999999994 45567778888886 99999 79999999999999
Q ss_pred EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394 108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKI 174 (378)
Q Consensus 108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i 174 (378)
+.....++.++..|.+.|+.++++|.|++.++.+.|+. ...-....+.+.|+|.|.+|+.++.++ |
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i 191 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-I 191 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-E
Confidence 99999999999999999999999999999999888887 111223335589999999988888665 8
Q ss_pred EEEEcCCceeeeee--cCCceEEEEecCC---------CccccCCCCCceEEEeeccCCcceeeeEE--cCCCCeEEEec
Q 046394 175 KIWDLRKYEVLQTL--PGHAKTLDFSRKD---------SGDFSGSHNYNRYMGYSMVKGYQIGKVSF--RPYEDVLGIGH 241 (378)
Q Consensus 175 ~iwd~~~~~~~~~~--~~~i~~~~~sp~g---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~ 241 (378)
-||.+.+..++..+ +..+.++.|-..+ ...+|+..+..++..+.+ |..+|.++.+ .|++.+|++++
T Consensus 192 ~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 192 DIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLA-HENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred EEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeec-chhheeeeEEEecCCceEEEEec
Confidence 89998887776666 3445566554433 347778777888888888 9999999884 45565555555
Q ss_pred CCCeEEEE
Q 046394 242 SMGVSGIL 249 (378)
Q Consensus 242 ~~g~~~~~ 249 (378)
+||.+.+|
T Consensus 271 SDG~I~vW 278 (362)
T KOG0294|consen 271 SDGFIKVW 278 (362)
T ss_pred cCceEEEE
Confidence 55543333
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=177.65 Aligned_cols=231 Identities=18% Similarity=0.197 Sum_probs=190.9
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF 93 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~ 93 (378)
.....+..|..+-++|..+++.+..+.+|.-.|+.+.|+|+...+++++.|-.|+||. ...........|.++ +.+..
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 4555566666788899999999999999999999999999999999999999999999 444556667788776 77666
Q ss_pred -----EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394 94 -----LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP 152 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~ 152 (378)
+|++++.|+++.+.|++++..+...... .-.+++.+|+|||.+|.+|+.|+. +.+|.++
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~ 391 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP 391 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence 9999999999999999999988776643 345889999999999999999998 8899999
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCCCCceEE------------E
Q 046394 153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSHNYNRYM------------G 216 (378)
Q Consensus 153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~~~~~~~------------~ 216 (378)
|..++|+.+|.||++++.|+.|++||+|..+.+.++ ...+.++.|.+.|.+......+...+. .
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 999999999999999999999999999999888888 346999999999998665544443332 2
Q ss_pred eeccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394 217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG 247 (378)
Q Consensus 217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~ 247 (378)
+.. |.+..+.+.|.....+|++++.|...+
T Consensus 472 ~~~-~sg~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 472 LAD-HSGLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred hhh-cccccceeeecccceEEeeccchhheE
Confidence 222 555678888888886666666665433
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-24 Score=198.43 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=131.3
Q ss_pred ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcE
Q 046394 42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEI 114 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~ 114 (378)
...+..|.+++|+|...+|+++-.+|.|.+|| .-+..+..|..|.++ ..++| +|++||+|..|++|+..+.++
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 34456788999999999999999999999999 677888999999998 99999 999999999999999999999
Q ss_pred EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394 115 VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR 180 (378)
Q Consensus 115 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~ 180 (378)
+.++.+|.+.|..+.|++.-.+|+++++|.+ +.||+..|.|.+|+|....++++|-|.+|||||+.
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 9999999999999999999999999999998 88999999999999998999999999999999985
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=6.7e-23 Score=163.81 Aligned_cols=207 Identities=13% Similarity=0.153 Sum_probs=176.8
Q ss_pred EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394 39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM 111 (378)
Q Consensus 39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~ 111 (378)
.-+.+|..+++-+.|+.+|.+|++|+.|..+.||- .+|..+-++.+|.+. .+++. .++||+.|.++++||+.+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 45788999999999999999999999999999999 699999999999987 77766 999999999999999999
Q ss_pred CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------------eeecCCCEEEEEEecCCCEE
Q 046394 112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------------MLCHQGPVSALAFHPNGHLM 165 (378)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------------~~~h~~~v~~~~~sp~g~~l 165 (378)
|+.+.+++. ..+|..+.|+++|++++..+++.. +..+...++.+-|.|-+.+|
T Consensus 84 Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 999999874 578999999999999888776654 44566788999999999999
Q ss_pred EEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEc
Q 046394 166 ATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFR 231 (378)
Q Consensus 166 ~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s 231 (378)
++|..||.|.+||+++|..+..- ...|+.+++|||..+ .+++..+...+.++.. ..||++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee--cccccceecc
Confidence 99999999999999998664433 378999999999887 5566666677777753 6789999999
Q ss_pred CCCCeEEEecCCCeEEE
Q 046394 232 PYEDVLGIGHSMGVSGI 248 (378)
Q Consensus 232 p~g~~l~~~~~~g~~~~ 248 (378)
|....++.|+.....-+
T Consensus 241 P~~d~VilgGGqeA~dV 257 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDV 257 (327)
T ss_pred cccceEEecCCceeeee
Confidence 99888777766554333
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=4.6e-24 Score=173.88 Aligned_cols=182 Identities=15% Similarity=0.198 Sum_probs=151.1
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-------------C------CeEEeeccCCCe-eEEEE----
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-------------G------TELHCSKEHGEV-LKLQF---- 93 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-------------~------~~~~~~~~~~~~-~~l~~---- 93 (378)
...+..|...+.+.+|||||.++|+|+.|..|+|.|.. | ..++++..|.+. +++.|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 34577899999999999999999999999999999942 1 245778888876 99999
Q ss_pred -EEEEEeCCCeEEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCE
Q 046394 94 -LLASINKLGQLRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPV 153 (378)
Q Consensus 94 -~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v 153 (378)
+|++++.|++|+++|+......+.++ ....+|.++.|+|.|.+|++|.+... -..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999997543222222 23468999999999999999998776 45689999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc----------cccCCCCCceEEEee
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYS 218 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~ 218 (378)
+++.+++.|++.+|+|.||.|+|||--+++|+.++ ...|++..|+.+|++ .+|...++.++..+.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 99999999999999999999999999999999999 367999999999986 556666666655554
Q ss_pred c
Q 046394 219 M 219 (378)
Q Consensus 219 ~ 219 (378)
+
T Consensus 345 G 345 (430)
T KOG0640|consen 345 G 345 (430)
T ss_pred c
Confidence 4
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.3e-23 Score=177.88 Aligned_cols=215 Identities=14% Similarity=0.214 Sum_probs=165.0
Q ss_pred eccceeeeeeccccee----------eEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCC--------CeEEee
Q 046394 22 KQEAIAREVDILSSRN----------QYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDG--------TELHCS 82 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~----------~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~--------~~~~~~ 82 (378)
...+.+.|||...... -..|.+|...-++++|++... +|++|+.|+.|.+||++. .+...+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 4456777888754422 237889988889999999654 789999999999999533 234568
Q ss_pred ccCCCe-eEEEE------EEEEEeCCCeEEEEEcC--CCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe-------
Q 046394 83 KEHGEV-LKLQF------LLASINKLGQLRYQNVT--MGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT------- 145 (378)
Q Consensus 83 ~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------- 145 (378)
.+|..+ ..++| +|++++.|+.+.|||++ +.++......|.+.++|++|+|.+ .+||+|+.|++
T Consensus 224 ~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR 303 (422)
T KOG0264|consen 224 SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR 303 (422)
T ss_pred ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech
Confidence 899887 88999 99999999999999999 556677777899999999999966 57888888888
Q ss_pred --------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEE
Q 046394 146 --------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMG 216 (378)
Q Consensus 146 --------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~ 216 (378)
+.+|...|..|.|||+ ...||+++.|+.+.|||+..-.....- .-......++++.
T Consensus 304 nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~---------------eda~dgppEllF~ 368 (422)
T KOG0264|consen 304 NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP---------------EDAEDGPPELLFI 368 (422)
T ss_pred hcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh---------------hhhccCCcceeEE
Confidence 7789999999999994 567889999999999998652111100 0001124567789
Q ss_pred eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
+.| |...|.++.|+|+..++ ++|.+.|+.+.+|..
T Consensus 369 HgG-H~~kV~DfsWnp~ePW~-----------I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 369 HGG-HTAKVSDFSWNPNEPWT-----------IASVAEDNILQIWQM 403 (422)
T ss_pred ecC-cccccccccCCCCCCeE-----------EEEecCCceEEEeec
Confidence 988 99999999999998744 445555666677754
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2e-23 Score=195.67 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=177.5
Q ss_pred ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------CeEEeeccCCCe-eEEEE-
Q 046394 35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------------------TELHCSKEHGEV-LKLQF- 93 (378)
Q Consensus 35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------------------~~~~~~~~~~~~-~~l~~- 93 (378)
...+.++..|.+.|.|+.|+|||.+||+|+.|+.|.||.... +.+..+.+|..- ..++|
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 345677888999999999999999999999999999999441 245678899875 99999
Q ss_pred ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eee------c
Q 046394 94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLC------H 149 (378)
Q Consensus 94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~------h 149 (378)
++++++.|++|.|||..+...+..+.+|.+.|-.+.|.|-|++||+-++|++ +.+ -
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 9999999999999999999999999999999999999999999999999998 111 1
Q ss_pred CCCEEEEEEecCCCEEEEEEC----CCeEEEEEcCCceeeeee---cCCceEEEEec-----------------------
Q 046394 150 QGPVSALAFHPNGHLMATSGK----DCKIKIWDLRKYEVLQTL---PGHAKTLDFSR----------------------- 199 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~----d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp----------------------- 199 (378)
...+..+.|||||++|++... -.++.|.+-.+.+.-..+ ..++.++.|+|
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 234678899999999998642 337889888777766666 37888888887
Q ss_pred ----CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 200 ----KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 200 ----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
|+...+|......|+..........|.+++|+|||..|.+++.||.+.++-.
T Consensus 299 vgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred EecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 2223677776666665443225678999999999999999999998877653
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=3.2e-24 Score=180.85 Aligned_cols=231 Identities=16% Similarity=0.094 Sum_probs=188.8
Q ss_pred eeeEEEeccceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEE
Q 046394 16 EKTWRIKQEAIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKL 91 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l 91 (378)
+.+.+...|..|++|++...+ .+.+|.+..++|+++.|.+++.++++++.|+.+++|+. +....+++.+|.+- +++
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence 445566677888888887666 67778888889999999999999999999999999995 56777899999986 888
Q ss_pred EE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCE
Q 046394 92 QF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPV 153 (378)
Q Consensus 92 ~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v 153 (378)
.| .+++|+.|.+|++||+....+..++- ....++.|..+ ...+++|..|.. ...-.+.|
T Consensus 268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~v 344 (459)
T KOG0288|consen 268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRV 344 (459)
T ss_pred hhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcce
Confidence 88 59999999999999999888877653 33556666665 556777777766 12234589
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCc----------cccCCCCCceEEE
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMG 216 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~ 216 (378)
+++..+++|..+++++.|.++.+.|+++......+ ....+.+.|||++.| .+|+..++.+...
T Consensus 345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred eeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence 99999999999999999999999999998888777 245899999998886 7888888887777
Q ss_pred eeccCCc-ceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 217 YSMVKGY-QIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 217 ~~~~~~~-~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
....+.. .|+++.|+|.|..|++++.++.+.+|
T Consensus 425 l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 425 LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 7663333 59999999999999888888876665
No 77
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=187.31 Aligned_cols=212 Identities=15% Similarity=0.194 Sum_probs=172.4
Q ss_pred ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCC-CeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEE
Q 046394 42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDG-TELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~-~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
.+|..+-+.|+|.|+|.+|++++.||.|++|+ ... .....+..+... .+++. .|++|+.+++|.+|.+.+++.-
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 46888999999999999999999999999999 333 333444434443 66655 9999999999999999988765
Q ss_pred EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
..+....-++.+++|+-+|.++|.|+.|-. +.+|.++|.++.|+|++++||+.+.||.|+|||+.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 555555678999999999999999999876 789999999999999999999999999999999999
Q ss_pred ceeeeee-----------cCCceEEEEecCCCc----------cccCCCCCceEEEeecc-CCcceeeeEEcCCCCeEEE
Q 046394 182 YEVLQTL-----------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMV-KGYQIGKVSFRPYEDVLGI 239 (378)
Q Consensus 182 ~~~~~~~-----------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~ 239 (378)
+.+..++ ...++.++|+|+|.. .+++.........+... +.+.+.+++|+|.|.|||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 9887777 134678999999553 44455555655555542 3344899999999999999
Q ss_pred ecCCCeEEEEEcCC
Q 046394 240 GHSMGVSGILIPGS 253 (378)
Q Consensus 240 ~~~~g~~~~~~~~s 253 (378)
++-+|.+.+|...+
T Consensus 250 s~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 250 STLDGQILVWNVDT 263 (933)
T ss_pred eccCCcEEEEeccc
Confidence 99999888887653
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.9e-23 Score=176.82 Aligned_cols=228 Identities=19% Similarity=0.281 Sum_probs=190.9
Q ss_pred EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE---
Q 046394 19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF--- 93 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~--- 93 (378)
+.+...-.+.+|+..+......+......|++++|..||++||.|...|.|+|||... ..+..+.+|..+ ....|
T Consensus 42 ~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~ 121 (487)
T KOG0310|consen 42 FAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ 121 (487)
T ss_pred eEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc
Confidence 4455566788899888888877777778999999999999999999999999999433 356788999987 77777
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe--------------eeecCCCEEE
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT--------------MLCHQGPVSA 155 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~--------------~~~h~~~v~~ 155 (378)
.+++|++|+.+++||+.+......+.+|.+.|.|.+|+|-+. .+++|+.||. -..|..+|.+
T Consensus 122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~ 201 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVES 201 (487)
T ss_pred CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceee
Confidence 899999999999999999887778999999999999999765 8999999998 3468889999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccC
Q 046394 156 LAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVK 221 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~ 221 (378)
+.+-|.|..+++++. +.|+|||+.+| +.+..+ +..|+|+.+..++.. .+++..+.+.+..+..
T Consensus 202 vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-- 278 (487)
T KOG0310|consen 202 VLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-- 278 (487)
T ss_pred EEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--
Confidence 999999999999984 56999999964 445544 478999999887654 5566666677777765
Q ss_pred CcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 222 GYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 222 ~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.++|.+++.+|+++.+++|..+|.+.+-
T Consensus 279 ~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 279 PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceeeEEecCCCceEEEecccceeeee
Confidence 6789999999999999999999976544
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=168.95 Aligned_cols=233 Identities=15% Similarity=0.148 Sum_probs=187.3
Q ss_pred EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-------------------------
Q 046394 20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR------------------------- 74 (378)
Q Consensus 20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~------------------------- 74 (378)
..+.|.+.++|.++++.++..+.+|.+.|++|.|++.+.++++++.|++..||..
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD 244 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD 244 (481)
T ss_pred ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence 3456788899999999999999999999999999999999999999999999961
Q ss_pred ------------CC----CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC
Q 046394 75 ------------DG----TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP 132 (378)
Q Consensus 75 ------------~~----~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 132 (378)
++ .++..+.+|.++ .+..| .+++++.|.+..+||+++|.++..+.+|....+.++-+|
T Consensus 245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP 324 (481)
T ss_pred ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC
Confidence 00 134567888887 78888 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee--cCCceE
Q 046394 133 FNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL--PGHAKT 194 (378)
Q Consensus 133 ~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~~~i~~ 194 (378)
...++++++.|.+ +.+|...|+++.|.-+. .+++|+.|.+|+|||+++. .++.++ .++++.
T Consensus 325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NR 403 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANR 403 (481)
T ss_pred cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccce
Confidence 9999999999988 88999999999998765 6899999999999999984 457777 578888
Q ss_pred EEEecCCCc----------cccCCCCCce----EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccc
Q 046394 195 LDFSRKDSG----------DFSGSHNYNR----YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDS 260 (378)
Q Consensus 195 ~~~sp~g~~----------~~~~~~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~ 260 (378)
++.+..+.+ .+++.....+ ...-.+ |...|+|++|..+-.. +-+++.+.|..+.-
T Consensus 404 vavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg-HrRMV~c~AW~eehp~----------cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 404 VAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG-HRRMVTCCAWLEEHPA----------CNLFTCGFDRMVAG 472 (481)
T ss_pred eEeecCCceEEeccCCceEEEEecCCCccccCCcccccc-cceeeeeeeccccCcc----------cccccccccceeee
Confidence 888776653 3344332221 112234 7778999999866421 22345555666666
Q ss_pred ccCC
Q 046394 261 WVAN 264 (378)
Q Consensus 261 w~~~ 264 (378)
|.++
T Consensus 473 W~in 476 (481)
T KOG0300|consen 473 WKIN 476 (481)
T ss_pred eEec
Confidence 7654
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1.8e-22 Score=189.34 Aligned_cols=210 Identities=15% Similarity=0.184 Sum_probs=168.3
Q ss_pred CCCceEEEEcCCCCEEEEEe--CCCcEEEEeCC-------------CCeEEeeccCCCe-eEEEE-----EEEEEeCCCe
Q 046394 45 ELGPYTLDFTSSGRYMAAAG--CKGYPYFYNRD-------------GTELHCSKEHGEV-LKLQF-----LLASINKLGQ 103 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~--~dg~i~iwd~~-------------~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~ 103 (378)
...|++++.+|+|..+|||+ .||.++||+.. ...+.++..|.+. +|+.| +||+|++|..
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 34588999999999999999 79999999832 1234567778887 99999 9999999999
Q ss_pred EEEEEcCC------------------CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCC
Q 046394 104 LRYQNVTM------------------GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQG 151 (378)
Q Consensus 104 i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~ 151 (378)
|.||.... -+.+..+.+|.+.|..++|+|++.++++++.|+. +.+|.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence 99998762 1257778899999999999999999999999998 789999
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---------cCCceEEEEecCCCcccc--------------CC
Q 046394 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---------PGHAKTLDFSRKDSGDFS--------------GS 208 (378)
Q Consensus 152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---------~~~i~~~~~sp~g~~~~~--------------~~ 208 (378)
.|-.+.|.|-|+|||+-+.|++|+||.+.+..+.+.+ ......+.|||||.+... ..
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 9999999999999999999999999998887676666 235688999999997332 23
Q ss_pred CCCceEEEeeccCCcceeeeEEcCC--------C-----C----eEEEecCCCeEEEEEcCCCC
Q 046394 209 HNYNRYMGYSMVKGYQIGKVSFRPY--------E-----D----VLGIGHSMGVSGILIPGSGE 255 (378)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~sp~--------g-----~----~l~~~~~~g~~~~~~~~s~d 255 (378)
.+...-..+-+ |..++.+++|+|. | . .+|+|+.|+.+.+|.++.--
T Consensus 253 ~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 253 GTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred CCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 33344445666 8889999999982 1 1 45666677766666554433
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-21 Score=158.74 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=162.7
Q ss_pred eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC-CeeEEEE-----EEEEEeC--CCeEEEEEcCC
Q 046394 41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG-EVLKLQF-----LLASINK--LGQLRYQNVTM 111 (378)
Q Consensus 41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~-~~~~l~~-----~l~s~~~--d~~i~iwd~~~ 111 (378)
+..-...|.++.|+++|.+|++++.|.+++||| .++..++++..+. ++..+.| .++.++. |.+|++.++.+
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 333457899999999999999999999999999 7888888887765 4577777 4444444 89999999999
Q ss_pred CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----ee--e-----cCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394 112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----ML--C-----HQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----~~--~-----h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~ 179 (378)
.+.++.|.+|...|+.++.+|-+..+++++.|.+ +. . +...-..++|.|+|-++|++.....|+|||+
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 9999999999999999999999999999999987 11 1 1223345799999999999998889999999
Q ss_pred CCc--eeeeee------cCCceEEEEecCCCcccc----------CCCCCceEEEeeccCCc---ceeeeEEcCCCCeEE
Q 046394 180 RKY--EVLQTL------PGHAKTLDFSRKDSGDFS----------GSHNYNRYMGYSMVKGY---QIGKVSFRPYEDVLG 238 (378)
Q Consensus 180 ~~~--~~~~~~------~~~i~~~~~sp~g~~~~~----------~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~ 238 (378)
|+. .+..++ ....+.+.|||||++.+. +.-++.....+.+ +.. --.+.+|+||++++.
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~~~~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG-YPNAGNLPLSATFTPDSKFVL 248 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee-ccCCCCcceeEEECCCCcEEE
Confidence 984 345555 357899999999997333 2333344444443 221 125778999998888
Q ss_pred EecCCCeEEEEEc
Q 046394 239 IGHSMGVSGILIP 251 (378)
Q Consensus 239 ~~~~~g~~~~~~~ 251 (378)
+|++||.+.+|--
T Consensus 249 ~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 249 SGSDDGTIHVWNL 261 (311)
T ss_pred EecCCCcEEEEEc
Confidence 7777777766654
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=151.42 Aligned_cols=242 Identities=17% Similarity=0.163 Sum_probs=179.1
Q ss_pred CCeeecCCceeeEEEeccceeeeeecccc-----ee----eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 046394 7 GGYLEAEGVEKTWRIKQEAIAREVDILSS-----RN----QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG- 76 (378)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~i~~~d~~~~-----~~----~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~- 76 (378)
-|+.+.++..+++++.+-.. +.|+..+ +. ...-+.|.+.|+|.+|||+|.+||+|+.|.+|++...+.
T Consensus 44 g~lyavgsnskt~ric~yp~--l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~d 121 (350)
T KOG0641|consen 44 GGLYAVGSNSKTFRICAYPA--LIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNAD 121 (350)
T ss_pred CceEEeccCCceEEEEcccc--ccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccc
Confidence 56667777888898887322 2223111 11 122346789999999999999999999999999987422
Q ss_pred -----CeEEeeccCCCe-eEEEE---------EEEEEe-CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEE
Q 046394 77 -----TELHCSKEHGEV-LKLQF---------LLASIN-KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLG 140 (378)
Q Consensus 77 -----~~~~~~~~~~~~-~~l~~---------~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 140 (378)
..-..+.-|.+. ..++| ++++++ .|..|++-|..+|+..+.+.+|.+.|.++ ++-+|-.|++|
T Consensus 122 t~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sg 200 (350)
T KOG0641|consen 122 TCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASG 200 (350)
T ss_pred cccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEcc
Confidence 112346667776 99999 666655 47889999999999999999999988775 45568899999
Q ss_pred cCCCe------------------eee---cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEE
Q 046394 141 HSGGT------------------MLC---HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLD 196 (378)
Q Consensus 141 ~~d~~------------------~~~---h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~ 196 (378)
+.|.+ +.+ ....|.+++..|.|++|++|-.|.+..+||++.+++++.+ | ..|.++.
T Consensus 201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr 280 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR 280 (350)
T ss_pred CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE
Confidence 99987 111 1357899999999999999999999999999999999999 3 7899999
Q ss_pred EecCCCccccCCC--------------CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccccc
Q 046394 197 FSRKDSGDFSGSH--------------NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWV 262 (378)
Q Consensus 197 ~sp~g~~~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~ 262 (378)
|||...+.+.... ...++..... |...+-.+.|+|.. .-|++.|.|.+..+|-
T Consensus 281 fsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e-hkdk~i~~rwh~~d------------~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 281 FSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE-HKDKAIQCRWHPQD------------FSFISSSADKTATLWA 347 (350)
T ss_pred eCCCceEEEEecccceEEEeecccchhhcCceEEEEe-ccCceEEEEecCcc------------ceeeeccCcceEEEec
Confidence 9998776332211 1223334434 77778889999998 4455666666666775
Q ss_pred CC
Q 046394 263 AN 264 (378)
Q Consensus 263 ~~ 264 (378)
.+
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 43
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.2e-21 Score=155.94 Aligned_cols=233 Identities=14% Similarity=0.080 Sum_probs=191.2
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC--CCcEEEEe-CCCCeEEeeccCCCe-eE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC--KGYPYFYN-RDGTELHCSKEHGEV-LK 90 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~--dg~i~iwd-~~~~~~~~~~~~~~~-~~ 90 (378)
.+..+.-++|+.+++||..++..+.++..+..+|..++|....+.++.++. |.+|+..+ .+.+.++.+.||... ++
T Consensus 26 G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~s 105 (311)
T KOG1446|consen 26 GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNS 105 (311)
T ss_pred CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEE
Confidence 444555567889999999999999999999999999999887777777766 88999999 677889999999986 88
Q ss_pred EEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------e-
Q 046394 91 LQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------M- 146 (378)
Q Consensus 91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~- 146 (378)
++. .+++++.|++|++||++..++...+.. ..-..++|+|.|-++|++..... +
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 888 999999999999999998887766543 34456899999999999988744 1
Q ss_pred eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c----CCceEEEEecCCCc----------cccCCCC
Q 046394 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P----GHAKTLDFSRKDSG----------DFSGSHN 210 (378)
Q Consensus 147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~----~~i~~~~~sp~g~~----------~~~~~~~ 210 (378)
.+.....+.|.|||+|++++.++..+.+.+.|.-+|..+.++ + ...-..+|+|||++ .+|+..+
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 133566889999999999999999999999999999998888 2 12257889998775 7888888
Q ss_pred CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 211 YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
+..+..+.+++..++.++.|+|.-.++++++..= .+|++
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l--~fw~p 302 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNL--VFWLP 302 (311)
T ss_pred CcEeeEecCCCCCCccccccCCceeeeeecCceE--EEEec
Confidence 9999999886789999999999876666655442 44443
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6e-23 Score=162.95 Aligned_cols=201 Identities=14% Similarity=0.193 Sum_probs=160.0
Q ss_pred eeeEEEeccceeeeeecccc-eeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEE
Q 046394 16 EKTWRIKQEAIAREVDILSS-RNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKL 91 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~-~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l 91 (378)
+..+..+.||.+++||+... .++..++.|...|+++.|++- +..++++|-||+|++|+ .....+.++.+|... ...
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA 153 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence 34566677999999996544 457778899999999999985 45678889999999999 556778999999987 888
Q ss_pred EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe---------------eeec
Q 046394 92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT---------------MLCH 149 (378)
Q Consensus 92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~---------------~~~h 149 (378)
.| ++++++.|+++++||++..-....+..|...+.|+.|+.-. ..+++|+.|+. +.+|
T Consensus 154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 88 99999999999999998754444588899999999999865 68888988887 7889
Q ss_pred CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeee
Q 046394 150 QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKV 228 (378)
Q Consensus 150 ~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 228 (378)
.-.|..+.||| ....|++++.|-+++|||..... ..+..... |+.-|..+
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d----------------------------s~~e~~~~-HtEFv~g~ 284 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD----------------------------SAIETVDH-HTEFVCGL 284 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEecccccch----------------------------hhhhhhhc-cceEEecc
Confidence 99999999999 45679999999999999986532 12222223 77778999
Q ss_pred EEcCCC-CeEEEecCCCe
Q 046394 229 SFRPYE-DVLGIGHSMGV 245 (378)
Q Consensus 229 ~~sp~g-~~l~~~~~~g~ 245 (378)
.||+.. .++|+++-|+.
T Consensus 285 Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDEL 302 (311)
T ss_pred ccccccCceeeecccccc
Confidence 999864 34444444443
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=172.10 Aligned_cols=191 Identities=12% Similarity=0.145 Sum_probs=165.4
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeE-EeeccCCCe-eEEEE------E
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTEL-HCSKEHGEV-LKLQF------L 94 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~l~~------~ 94 (378)
.|.|+++|..+..-+..+..|+.+|..+.|+|.+. .+++|+.|+.+++||.++..+ ..+.+|++. .+.+| +
T Consensus 89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 58899999877777788999999999999999765 677788888999999766554 478999986 88888 8
Q ss_pred EEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEe
Q 046394 95 LASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFH 159 (378)
Q Consensus 95 l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~s 159 (378)
++|||.||.|++||+++. ..+.++ .|..+|..+.+-|.|+.|++++.+.. +..|...|+|+++.
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEee
Confidence 999999999999999986 566666 58899999999999999999988776 44599999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccccCCCCCceEE
Q 046394 160 PNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYM 215 (378)
Q Consensus 160 p~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~ 215 (378)
.++..|+++|-|+.|++||+.+.+.++.+ +++|-+++.+|++...+.+..++....
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 99999999999999999999999999988 899999999999988777665555443
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=178.14 Aligned_cols=235 Identities=16% Similarity=0.151 Sum_probs=187.8
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC-eeEEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE-VLKLQ 92 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~-~~~l~ 92 (378)
..+.+.+.+++.+.+||+.+++.++++.++...|+++.-+|-=..+|.|..+|+|.|++ ..++.+..++..-+ ++.++
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence 67888889999999999999999999999999999999999888999999999999999 56777788877634 59999
Q ss_pred E------EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCCCEEEEEcCC----------------------
Q 046394 93 F------LLASINKLGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFNGVVSLGHSG---------------------- 143 (378)
Q Consensus 93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d---------------------- 143 (378)
| ++++|+..|.+.+||++..+.+..+. .|.+.+....|-|....+++++.|
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 9 89999999999999998766554443 344555555555544444444444
Q ss_pred -------------------------Ce-----------------------------------------------------
Q 046394 144 -------------------------GT----------------------------------------------------- 145 (378)
Q Consensus 144 -------------------------~~----------------------------------------------------- 145 (378)
++
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 32
Q ss_pred --------------------------------------------------------------------------e---ee
Q 046394 146 --------------------------------------------------------------------------M---LC 148 (378)
Q Consensus 146 --------------------------------------------------------------------------~---~~ 148 (378)
+ ..
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 2 46
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCC----------ccccCCCCCceEEE
Q 046394 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS----------GDFSGSHNYNRYMG 216 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~----------~~~~~~~~~~~~~~ 216 (378)
|.++|++++...-++.+++++.+|.+.+||.....++..+ ..+++++..+.... +.+.+..+...+..
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 8888999999888888999999999999999888887777 56777777766443 25566677777888
Q ss_pred eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
+.+ |+..|++++|||||++|++++.|+.+++|.
T Consensus 572 f~g-h~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 572 FWG-HGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhc-cccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 888 999999999999998877777777666654
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=5.2e-22 Score=168.64 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=176.7
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF 118 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~ 118 (378)
.++.++...|....+++|+.|..+.++| ..++.+..+.||... +.+.| .+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 4678888888778999999999999999 667788899999875 88888 8889999999999999888888888
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEcCCCe-----------eeecC-----CCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 119 WTGLGRTDVIRVNPFNGVVSLGHSGGT-----------MLCHQ-----GPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 119 ~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------~~~h~-----~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
..|..+|+.+..+|.|.||++++.|+. +..|. -.+++.+|+|||..|++|..|+.|+|||+.++
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 899999999999999999999999998 22222 24899999999999999999999999999999
Q ss_pred eeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 183 EVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 183 ~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
..+..| | ++|..++|+.+|.+ .+|+.+....+.++.......|.++.|.+.|.+|++++.+=.+.++
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 988888 3 89999999999886 6788777777777776556679999999999999999776654444
Q ss_pred E
Q 046394 250 I 250 (378)
Q Consensus 250 ~ 250 (378)
.
T Consensus 460 ~ 460 (506)
T KOG0289|consen 460 K 460 (506)
T ss_pred e
Confidence 3
No 88
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.7e-22 Score=181.51 Aligned_cols=198 Identities=19% Similarity=0.273 Sum_probs=165.4
Q ss_pred ceEEEEcC-CCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEE
Q 046394 48 PYTLDFTS-SGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 48 v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
+..+.|.. +.++|||++..|.|.+||+.. ..+..|..|... ++++| +|++||.||+|++||++.....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34566763 457999999999999999543 445678889876 99999 9999999999999999998888
Q ss_pred EEEecCCCCeeEEEEcCC-CCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394 116 GNFWTGLGRTDVIRVNPF-NGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~ 179 (378)
.++......|..+.|+|. +..|+++.+.|. +.+|.++|.|+.|+|++.+|||||.|+.|+|||+
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 888888899999999995 568888888887 7899999999999999999999999999999999
Q ss_pred CCcee--eeee--cCCceEEEEecCCCc-------------cccCCC-CCceEEEeeccCCcceeeeEEcC-CCCeEEEe
Q 046394 180 RKYEV--LQTL--PGHAKTLDFSRKDSG-------------DFSGSH-NYNRYMGYSMVKGYQIGKVSFRP-YEDVLGIG 240 (378)
Q Consensus 180 ~~~~~--~~~~--~~~i~~~~~sp~g~~-------------~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~ 240 (378)
.+.+. +.++ ..++.++.|-|...+ .+|+.. .--|+.++.. |...++.++|.. |-..|.++
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec-cCccccceeccCCCceeeEee
Confidence 86544 5555 589999999998775 677754 4456777877 899999999976 33577788
Q ss_pred cCCCeE
Q 046394 241 HSMGVS 246 (378)
Q Consensus 241 ~~~g~~ 246 (378)
+.||.+
T Consensus 329 sKD~tv 334 (839)
T KOG0269|consen 329 SKDGTV 334 (839)
T ss_pred cCccHH
Confidence 888854
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.8e-21 Score=157.13 Aligned_cols=215 Identities=9% Similarity=0.065 Sum_probs=165.9
Q ss_pred cceeeeeecccc-e-eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-------
Q 046394 24 EAIAREVDILSS-R-NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF------- 93 (378)
Q Consensus 24 ~~~i~~~d~~~~-~-~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------- 93 (378)
|++|++|+++.. . .......|.++|.+++|+.||..+++|+.|+.+++||+....+..+..|.++ ..+.|
T Consensus 49 D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~ 128 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQ 128 (347)
T ss_pred CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcc
Confidence 677778888763 2 2244566889999999999999999999999999999766688888999887 78888
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eee----cCCCEEEEE
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLC----HQGPVSALA 157 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~----h~~~v~~~~ 157 (378)
.|+||+.|.+|++||++...++.++.. ++.+.++..- ...++++..++. +.. .+-.+.||+
T Consensus 129 cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va 205 (347)
T KOG0647|consen 129 CLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA 205 (347)
T ss_pred eeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE
Confidence 789999999999999999999888763 3445544332 233444444433 222 234578999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCceee--eee--cC----------CceEEEEec----------CCCccccCCCCCce
Q 046394 158 FHPNGHLMATSGKDCKIKIWDLRKYEVL--QTL--PG----------HAKTLDFSR----------KDSGDFSGSHNYNR 213 (378)
Q Consensus 158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~--~~~--~~----------~i~~~~~sp----------~g~~~~~~~~~~~~ 213 (378)
..++....+.|+.+|.+-|..+..+.+. .+| |. .|++|+|+| ||.+.+|+......
T Consensus 206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence 9998888899999999999988876332 233 21 468899998 67789999888887
Q ss_pred EEEeeccCCcceeeeEEcCCCCeEEEecC
Q 046394 214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHS 242 (378)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 242 (378)
+..... |..+|++.+|+.+|.++|.+..
T Consensus 286 Lk~s~~-~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 286 LKTSET-HPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred hhccCc-CCCccceeEecCCCCEEEEEee
Confidence 877777 8999999999999998876544
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=7.7e-20 Score=161.13 Aligned_cols=228 Identities=9% Similarity=0.083 Sum_probs=163.1
Q ss_pred EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEE-EEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE---
Q 046394 19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM-AAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF--- 93 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~--- 93 (378)
+....++.+.+||+.+++.+..+..+ ..+.+++|+|+|..+ ++++.++.|++||. ++..+..+..+..+..+.|
T Consensus 5 ~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 83 (300)
T TIGR03866 5 VSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPN 83 (300)
T ss_pred EEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCC
Confidence 34456889999999999888888876 457889999999876 56677899999995 4555566666555566667
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEE
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSAL 156 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~ 156 (378)
++++++.|+.|.+||+.+++.+..+.. ...+.+++|+|++.++++++.++. .......+.++
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA 162 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence 445566789999999998888777753 245688999999999998877653 01122345678
Q ss_pred EEecCCCEEEEE-ECCCeEEEEEcCCceeeeee--cC--------CceEEEEecCCCc-----------cccCCCCCceE
Q 046394 157 AFHPNGHLMATS-GKDCKIKIWDLRKYEVLQTL--PG--------HAKTLDFSRKDSG-----------DFSGSHNYNRY 214 (378)
Q Consensus 157 ~~sp~g~~l~t~-~~d~~i~iwd~~~~~~~~~~--~~--------~i~~~~~sp~g~~-----------~~~~~~~~~~~ 214 (378)
+|+|+|++|+++ ..++.|.+||+.+++.+..+ +. ....++|+|+|.+ .+|+..+....
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 999999988544 46999999999998877655 11 2356889999875 23344444443
Q ss_pred EEeeccCCcceeeeEEcCCCCeEEEec-CCCeEEEEE
Q 046394 215 MGYSMVKGYQIGKVSFRPYEDVLGIGH-SMGVSGILI 250 (378)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~g~~~~~~ 250 (378)
.... ++..+.+++|+|+|.+|+++. .+|.+.+|.
T Consensus 243 ~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 243 DYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 3322 345688999999998776553 345444443
No 91
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=2.9e-20 Score=171.34 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=151.9
Q ss_pred eeeEEEeccceeeeeecccc-------eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CCCeEEeeccCC
Q 046394 16 EKTWRIKQEAIAREVDILSS-------RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DGTELHCSKEHG 86 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~-------~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~ 86 (378)
...+..+.|+.|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+ ++..+..+.+|.
T Consensus 89 ~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 89 QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 35667778899999999765 3467789999999999999986 69999999999999994 566778888888
Q ss_pred Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC-eeEEEEcCCCCEEEEEcC----CCe----------
Q 046394 87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGR-TDVIRVNPFNGVVSLGHS----GGT---------- 145 (378)
Q Consensus 87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~----d~~---------- 145 (378)
.. .+++| +|++++.|++|++||+++++.+..+..|.+. +..+.|.+++..+++++. |+.
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 75 99999 8999999999999999999999888888754 456789998887776553 333
Q ss_pred -----ee-ecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceeeeee----cCCceEEEEecCCCcccc
Q 046394 146 -----ML-CHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 146 -----~~-~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~ 206 (378)
.. .+...+....|+|++++|++++ .|+.|++||+.++.++..+ ..+...++|.|.-..++-
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~ 320 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR 320 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccccccc
Confidence 11 1223455667899999998887 5999999999998877655 356788888886554433
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.6e-21 Score=166.92 Aligned_cols=229 Identities=17% Similarity=0.200 Sum_probs=185.1
Q ss_pred eeecCCceeeEEEeccceeeeeecccceee-EE---------------e--ecCCCCceEEEEcCCCCEEEEEeCCCcEE
Q 046394 9 YLEAEGVEKTWRIKQEAIAREVDILSSRNQ-YD---------------I--MLPELGPYTLDFTSSGRYMAAAGCKGYPY 70 (378)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~---------------l--~~~~~~v~~~~~sp~g~~l~~~~~dg~i~ 70 (378)
...+....+.|..+.+++|--|++.++... .. . ..|...+.+++.||||+|||+|+.|..|.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~ 227 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ 227 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence 344445667788888888888999888743 11 1 26777889999999999999999999999
Q ss_pred EEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394 71 FYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG 143 (378)
Q Consensus 71 iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 143 (378)
||+ .+...++.+.+|.+. .+++| .+++++.|.+|++|++.....+.++-+|.+.|..|....-+..+.+|+.|
T Consensus 228 Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrD 307 (479)
T KOG0299|consen 228 IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRD 307 (479)
T ss_pred EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecccc
Confidence 999 567888899999987 99999 89999999999999999888888898999999999999999999999999
Q ss_pred Ce-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccC
Q 046394 144 GT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 144 ~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~ 207 (378)
++ +.+|.+.+-|++|-.+ ..|+|||.+|.|.+|++.+.+++++. |+-...+
T Consensus 308 rT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~------------ 374 (479)
T KOG0299|consen 308 RTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL------------ 374 (479)
T ss_pred ceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCc------------
Confidence 88 6788889999999754 57999999999999999998888776 2221111
Q ss_pred CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccc
Q 046394 208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFD 259 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~ 259 (378)
.++. +...|++|+..|...++|+|+.+|.+++|....+-..|.
T Consensus 375 ----~~~~-----~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 375 ----DPVN-----GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred ----cccc-----cccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 0110 224699999999998888888888777777665544333
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.7e-22 Score=165.74 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=185.9
Q ss_pred eeEEEeccceeeeeecccceeeEE--------eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec-cCC
Q 046394 17 KTWRIKQEAIAREVDILSSRNQYD--------IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK-EHG 86 (378)
Q Consensus 17 ~~~~~~~~~~i~~~d~~~~~~~~~--------l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~-~~~ 86 (378)
-.+..+-|+.|.+||..+|+.... +..++.+|.|++||.|...||+|+.||.|+||. .+|.+++.+. +|+
T Consensus 227 yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt 306 (508)
T KOG0275|consen 227 YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT 306 (508)
T ss_pred eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc
Confidence 345566789999999999875443 445778999999999999999999999999999 7889998886 777
Q ss_pred C-eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394 87 E-VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------- 145 (378)
Q Consensus 87 ~-~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------- 145 (378)
. ++++.| .+++++.|.++++.-+.+|+++..|.+|...|+...|+++|..+++++.||+
T Consensus 307 kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 307 KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred cCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence 5 599999 8999999999999999999999999999999999999999999999999998
Q ss_pred -eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee------cCCceEEEEecCCCccc----------cC
Q 046394 146 -MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKDSGDF----------SG 207 (378)
Q Consensus 146 -~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp~g~~~~----------~~ 207 (378)
..+...+|.++-.-| +...++.|...++|.|-++ .|+.++++ .+...+.+.||.|.+.. +.
T Consensus 387 k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 387 KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 223456788888877 5667999999999999988 57888888 35567788899888632 23
Q ss_pred CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
...+.....+.. |...|-.++-+|..+.||+-+.||...+|
T Consensus 466 ~~sG~LE~tl~V-hEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 466 VLSGKLERTLPV-HEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred eecCceeeeeec-ccccccccccCcccchhhhhcccchhhhc
Confidence 333344444444 66677888999998766666666644433
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.4e-22 Score=156.73 Aligned_cols=208 Identities=14% Similarity=0.155 Sum_probs=160.0
Q ss_pred ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CC--CeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEc
Q 046394 42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DG--TELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNV 109 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~--~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~ 109 (378)
..|...|..+...--|..|||+++|++|+|+.. ++ ..+..|.+|.++ ..++| +||+|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 457777777666666999999999999999993 33 467889999998 89998 9999999999999998
Q ss_pred CCCcE--EEEEecCCCCeeEEEEcCCC--CEEEEEcCCCe-----------------eeecCCCEEEEEEecC---C---
Q 046394 110 TMGEI--VGNFWTGLGRTDVIRVNPFN--GVVSLGHSGGT-----------------MLCHQGPVSALAFHPN---G--- 162 (378)
Q Consensus 110 ~~~~~--~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~---g--- 162 (378)
.+|+- ...+..|...|++++|.|.+ -.|++++.||. ...|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88753 44566789999999999975 58899999998 6678999999999995 5
Q ss_pred --------CEEEEEECCCeEEEEEcCCcee--eeee--c-CCceEEEEecC--------------CCccccCCCCC-ce-
Q 046394 163 --------HLMATSGKDCKIKIWDLRKYEV--LQTL--P-GHAKTLDFSRK--------------DSGDFSGSHNY-NR- 213 (378)
Q Consensus 163 --------~~l~t~~~d~~i~iwd~~~~~~--~~~~--~-~~i~~~~~sp~--------------g~~~~~~~~~~-~~- 213 (378)
+.|++|+.|+.|+||+..++.- -+++ | ..+..++|.|. |...+|..... .+
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 5699999999999999987532 2334 3 56777777774 44455543211 10
Q ss_pred -EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 214 -YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 214 -~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
...+.. ....+..++||+.|.+|++++.|..+.+|.
T Consensus 248 k~tll~~-f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 248 KKTLLEE-FPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccc-CCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 011111 345799999999998888888777666665
No 95
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=162.69 Aligned_cols=209 Identities=16% Similarity=0.292 Sum_probs=153.2
Q ss_pred EEEeccceeeeeecccc----------------eeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeE--
Q 046394 19 WRIKQEAIAREVDILSS----------------RNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTEL-- 79 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~----------------~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~-- 79 (378)
..++..+.|+|||+... +.++++.+|...-++++|||-.. .|++|..-+.|++|......-
T Consensus 169 aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v 248 (440)
T KOG0302|consen 169 ASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV 248 (440)
T ss_pred eeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee
Confidence 34455789999998432 46788999999999999999432 488888888999999432221
Q ss_pred --EeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecC
Q 046394 80 --HCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQ 150 (378)
Q Consensus 80 --~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~ 150 (378)
..+.+|... -.++| .|++||.||+|+|||++.+.....+. ...|.
T Consensus 249 d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~--------------------------~kAh~ 302 (440)
T KOG0302|consen 249 DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS--------------------------TKAHN 302 (440)
T ss_pred cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE--------------------------eeccC
Confidence 235668765 88899 99999999999999999874322221 13788
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEE
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSF 230 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (378)
+.|+.|.|+..-.+||+|+.||+++|||+|+.+ ...++..+.. |..+|+++.|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~--------------------------~~~pVA~fk~-Hk~pItsieW 355 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFK--------------------------SGQPVATFKY-HKAPITSIEW 355 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhcc--------------------------CCCcceeEEe-ccCCeeEEEe
Confidence 899999999987799999999999999999854 4477777877 9999999999
Q ss_pred cCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecC
Q 046394 231 RPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLN 292 (378)
Q Consensus 231 sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (378)
+|... .++..++.|..+.+|++..-....+...... ..|.++||.++.++
T Consensus 356 ~p~e~-----------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~-~~L~dlPpQLLFVH 405 (440)
T KOG0302|consen 356 HPHED-----------SVIAASGEDNQITIWDLSVEADEEEIDQEAA-EGLQDLPPQLLFVH 405 (440)
T ss_pred ccccC-----------ceEEeccCCCcEEEEEeeccCChhhhccccc-cchhcCCceeEEEe
Confidence 99864 4555666777788888643222111111111 12557777776665
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=9.4e-22 Score=166.09 Aligned_cols=191 Identities=12% Similarity=0.100 Sum_probs=157.8
Q ss_pred eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE---
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF--- 93 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~--- 93 (378)
.+.-++|..+++|++...+...+|.+|++.|+++.|.-....+++|+.|.+|++||+ ...+..++-....+.++..
T Consensus 234 ~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~ 313 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSIS 313 (459)
T ss_pred EEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecce
Confidence 455567888999999999999999999999999999987777999999999999995 4555555444444444444
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeee------------------cCCCEEE
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLC------------------HQGPVSA 155 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~------------------h~~~v~~ 155 (378)
.+++|-.|+.|++||++++.++...+.+ +.|+++..++++..+.+++.|..+.- -...++.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred eeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence 7888999999999999999999998766 59999999999998888888777100 1123778
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCceeeeee---c--CCceEEEEecCCCccccCCC
Q 046394 156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---P--GHAKTLDFSRKDSGDFSGSH 209 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~--~~i~~~~~sp~g~~~~~~~~ 209 (378)
+.|||++.|+++||.||.|+||++.++++...+ + ..|++++|+|.|...+....
T Consensus 393 vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred eEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 999999999999999999999999999998877 3 35999999999987665543
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-21 Score=173.51 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=162.7
Q ss_pred eEEEeccceeeeeecccce------eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CC--CeEEeeccCCCe
Q 046394 18 TWRIKQEAIAREVDILSSR------NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DG--TELHCSKEHGEV 88 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~------~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~~ 88 (378)
.|...-|++|++|++..-. .+..+..|...|..+....+|+.|+++|.|-+|++|+. .+ .++.+++.|.+.
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY 119 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY 119 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence 5666667888888775432 36678899999999999999999999999999999993 23 577889999986
Q ss_pred -eEEEE------EEEEEeCCCeEEEEEcCCC--cEEE--------EEe-cCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394 89 -LKLQF------LLASINKLGQLRYQNVTMG--EIVG--------NFW-TGLGRTDVIRVNPFNGVVSLGHSGGT----- 145 (378)
Q Consensus 89 -~~l~~------~l~s~~~d~~i~iwd~~~~--~~~~--------~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~----- 145 (378)
.|+++ ++|+||-|+.|++||+.++ +.+. .+. ++..++++++-++.|..|++|+..+.
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 88888 9999999999999999977 2222 223 56678999999999999999988776
Q ss_pred ---------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCccccCCCCCce
Q 046394 146 ---------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSGDFSGSHNYNR 213 (378)
Q Consensus 146 ---------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~~~ 213 (378)
+.+|...|.++..++||+.++++|.||+|++||+...+|+.++ | ..++++..+|+=.+...+.+++..
T Consensus 200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence 7899999999999999999999999999999999999999999 4 668888888765554444444444
Q ss_pred E
Q 046394 214 Y 214 (378)
Q Consensus 214 ~ 214 (378)
+
T Consensus 280 ~ 280 (735)
T KOG0308|consen 280 Y 280 (735)
T ss_pred E
Confidence 3
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=5.6e-20 Score=146.73 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=164.0
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF 93 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~ 93 (378)
-+.++..+.+..+++||+..+++...+... ++-.-++|+|+|.++++++.|..|...| .+.+.+........++-+.|
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w 155 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW 155 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeee
Confidence 456677788889999999999999888876 4445688999999999999999999999 45555555555555566777
Q ss_pred -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394 94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS 154 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~ 154 (378)
+|+.....|.|.|.....-+++.++..|+..+.||.|+|+|++||+|+.|.. +..+.-+|.
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVR 235 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVR 235 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceE
Confidence 4444455699999999999999999999999999999999999999999987 677889999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394 155 ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~ 207 (378)
.+.||-+|++||++|.|..|-|=++.+|..+..+ .++...++|+|......+.
T Consensus 236 TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 236 TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred EEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEE
Confidence 9999999999999999999999999999999999 5889999999987765443
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=1.2e-20 Score=161.30 Aligned_cols=179 Identities=16% Similarity=0.209 Sum_probs=141.6
Q ss_pred ecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCCC---C--------eEEeeccCCCe-eEEEE------EEEEEeCCC
Q 046394 42 MLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRDG---T--------ELHCSKEHGEV-LKLQF------LLASINKLG 102 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~~---~--------~~~~~~~~~~~-~~l~~------~l~s~~~d~ 102 (378)
-.|.+.|+.+.+-|.. ..+|+++..+.|+|||.+. . +-..+.+|... .+++| .+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4588899999998865 5677888899999999421 1 12368889884 88999 999999999
Q ss_pred eEEEEEcCCCc-------EEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe----------------eeecCCCEEEEEE
Q 046394 103 QLRYQNVTMGE-------IVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT----------------MLCHQGPVSALAF 158 (378)
Q Consensus 103 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~----------------~~~h~~~v~~~~~ 158 (378)
+|++||+.... +...+.+|...|..++|+|-. .+|+++++|+. ..+|.+.|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999997532 356678899999999999966 57777777777 5678999999999
Q ss_pred ec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCC-e
Q 046394 159 HP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-V 236 (378)
Q Consensus 159 sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~ 236 (378)
+| ++..|||||.|++|.+||+|+. ..++..+.+ |...|.+|.|||+.. +
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL----------------------------~~~lh~~e~-H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNL----------------------------NKPLHTFEG-HEDEVFQVEWSPHNETV 331 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhc----------------------------ccCceeccC-CCcceEEEEeCCCCCce
Confidence 99 6677899999999999999973 346677777 899999999999874 4
Q ss_pred EEEecCCCeEEEE
Q 046394 237 LGIGHSMGVSGIL 249 (378)
Q Consensus 237 l~~~~~~g~~~~~ 249 (378)
||+++.|+.+.+|
T Consensus 332 LASSg~D~rl~vW 344 (422)
T KOG0264|consen 332 LASSGTDRRLNVW 344 (422)
T ss_pred eEecccCCcEEEE
Confidence 5555555544444
No 100
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=3.8e-19 Score=164.94 Aligned_cols=190 Identities=11% Similarity=0.082 Sum_probs=141.6
Q ss_pred eeeEEEeccceeeeeecccce--------eeEEeecCCCCceEEEEcCCCCE-EEEEeCCCcEEEEeC-CCCeEEeeccC
Q 046394 16 EKTWRIKQEAIAREVDILSSR--------NQYDIMLPELGPYTLDFTSSGRY-MAAAGCKGYPYFYNR-DGTELHCSKEH 85 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~--------~~~~l~~~~~~v~~~~~sp~g~~-l~~~~~dg~i~iwd~-~~~~~~~~~~~ 85 (378)
...+..+.|+.|++||+.++. .+..+.+|...|.+++|+|++.. |++|+.|+.|+|||+ .+..+..+..+
T Consensus 88 ~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~ 167 (568)
T PTZ00420 88 EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP 167 (568)
T ss_pred CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 455667788999999987642 34467889999999999999875 578999999999995 45556666544
Q ss_pred CCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE-----EEEcCCCCEEEEEcCCC----e------
Q 046394 86 GEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV-----IRVNPFNGVVSLGHSGG----T------ 145 (378)
Q Consensus 86 ~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~d~----~------ 145 (378)
..+.+++| +|++++.|+.|+|||+++++.+..+.+|.+.+.+ ..|++++.+|++++.++ .
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 44589999 8888999999999999999999999988876433 34568999888877664 2
Q ss_pred -----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee--cCCceEEEEecCCCccc
Q 046394 146 -----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL--PGHAKTLDFSRKDSGDF 205 (378)
Q Consensus 146 -----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~--~~~i~~~~~sp~g~~~~ 205 (378)
+..+.+.+......++|.++++|+.|++|++|++..+.+ +..+ ..+..+++|.|....++
T Consensus 248 r~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~dv 322 (568)
T PTZ00420 248 KNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDV 322 (568)
T ss_pred CCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccccCc
Confidence 111222222333344688999999999999999987643 2222 36778899999876533
No 101
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.8e-20 Score=158.84 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=171.4
Q ss_pred ceeeeeecccceeeEEeecCCC-CceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-EEeeccCCCe-eEEEE-----EE
Q 046394 25 AIAREVDILSSRNQYDIMLPEL-GPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE-LHCSKEHGEV-LKLQF-----LL 95 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~-~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~-~~l~~-----~l 95 (378)
..+.+||+.||....++++... ...++..- ++.|++++.. -..|.+|...... .....--.++ .+++- ++
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 3478899999999999887522 22222221 2356666644 4578999853322 2212222333 66655 55
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------eeecCCC
Q 046394 96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------MLCHQGP 152 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------~~~h~~~ 152 (378)
+.|+..+.|++|.+.+|..+..+..|...|+|+.|+.||.+|++|+.||. +..|.-+
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 55558999999999999999999999999999999999999999999998 6789999
Q ss_pred EEEEEEecC--CCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc-------------cccCC-------
Q 046394 153 VSALAFHPN--GHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG-------------DFSGS------- 208 (378)
Q Consensus 153 v~~~~~sp~--g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~-------------~~~~~------- 208 (378)
|+++...+. ..+++|+|.|.++++||+..+.++.++ +..+.+++.+|.+.. .++..
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v 256 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV 256 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc
Confidence 999988774 357999999999999999999999888 789999999996653 11111
Q ss_pred ------CCCceEEEeeccCCc--ceeeeEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394 209 ------HNYNRYMGYSMVKGY--QIGKVSFRPYEDVLGIGHSMGVSGILIPGSG 254 (378)
Q Consensus 209 ------~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~ 254 (378)
..+..+..+.+ |.. +|+|++.+-||..|++|+.||.+++|...|.
T Consensus 257 ~~k~~~~~~t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 257 NQKGRHEENTQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccccccccceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 11223445555 555 9999999999999999999998888876653
No 102
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=3.8e-20 Score=150.17 Aligned_cols=203 Identities=14% Similarity=0.182 Sum_probs=153.5
Q ss_pred EeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-----------EEe-----eccCCC-eeEEEE------EE
Q 046394 40 DIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTE-----------LHC-----SKEHGE-VLKLQF------LL 95 (378)
Q Consensus 40 ~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~-----------~~~-----~~~~~~-~~~l~~------~l 95 (378)
....|.++|+++...+ .|+|+++|+.||.|.|||+.... +.. -.+|.- +.++.| .|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999988 67999999999999999953210 111 123333 366666 89
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC---EEEEEcCCCe--------------eeecCCCEEEEEE
Q 046394 96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG---VVSLGHSGGT--------------MLCHQGPVSALAF 158 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~--------------~~~h~~~v~~~~~ 158 (378)
.+++.|.++++||..+.+....|. -++.|..-++||-.. ++|+|..+-. +.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999999998888775 457888889998553 5666655544 8899999999999
Q ss_pred ecCCCE-EEEEECCCeEEEEEcCCc-eeeeee--cCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCC
Q 046394 159 HPNGHL-MATSGKDCKIKIWDLRKY-EVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE 234 (378)
Q Consensus 159 sp~g~~-l~t~~~d~~i~iwd~~~~-~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 234 (378)
+|...+ |+||+.||.|++||++.. -++..+ +.. .....+..-.. |.+.|+.++|+.+|
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----------------k~~p~~~~n~a-h~gkvngla~tSd~ 258 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----------------KRPPILKTNTA-HYGKVNGLAWTSDA 258 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccC-----------------ccCcccccccc-ccceeeeeeecccc
Confidence 997766 789999999999999874 444444 110 11111222233 77889999999999
Q ss_pred CeEEEecCCCeEEEEEcCCCCcccccc
Q 046394 235 DVLGIGHSMGVSGILIPGSGEPNFDSW 261 (378)
Q Consensus 235 ~~l~~~~~~g~~~~~~~~s~d~~i~~w 261 (378)
.+|++++.|..+++|-+.++.++++-+
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred hhhhhccCccceEEeecccCccccccc
Confidence 999999999988999888888877655
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=2.2e-20 Score=167.95 Aligned_cols=201 Identities=15% Similarity=0.108 Sum_probs=164.1
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEcCC-CcE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNVTM-GEI 114 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~~~-~~~ 114 (378)
.++.+++.||+|++||+|..-|+++||++. -.....+.+|... .|+.| +||+++.|..|+|||+.. ..+
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 578999999999999999999999999954 4455667788765 99988 999999999999999864 457
Q ss_pred EEEEecCCCCeeEEEEcCCC--CEEEEEcCCCe--------------eeec-----CCCEEEEEEecCCCEEEEEECCCe
Q 046394 115 VGNFWTGLGRTDVIRVNPFN--GVVSLGHSGGT--------------MLCH-----QGPVSALAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 115 ~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~--------------~~~h-----~~~v~~~~~sp~g~~l~t~~~d~~ 173 (378)
++++.+|...|+++.|.-.| ..+++++.|.. +..| ...+..|+..|...++++++.|..
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence 88899999999999999887 57777777766 2222 356889999999999999999999
Q ss_pred EEEEEcCCceeeeee-----c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394 174 IKIWDLRKYEVLQTL-----P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL 237 (378)
Q Consensus 174 i~iwd~~~~~~~~~~-----~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 237 (378)
|+|||+.+|+..+.| + +..-.+...|.|.| .+++...++++....+ |+..|+.+.|.+|-+.|
T Consensus 620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-HsE~VTG~kF~nDCkHl 698 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HSEAVTGVKFLNDCKHL 698 (1080)
T ss_pred eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cchheeeeeecccchhh
Confidence 999999999999999 2 55677888888876 3445556667777777 99999999999999666
Q ss_pred EEecCCCeEE
Q 046394 238 GIGHSMGVSG 247 (378)
Q Consensus 238 ~~~~~~g~~~ 247 (378)
++.+.||.+.
T Consensus 699 ISvsgDgCIF 708 (1080)
T KOG1408|consen 699 ISVSGDGCIF 708 (1080)
T ss_pred eeecCCceEE
Confidence 6555555433
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5e-20 Score=157.84 Aligned_cols=240 Identities=18% Similarity=0.254 Sum_probs=174.9
Q ss_pred CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeE-
Q 046394 2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTEL- 79 (378)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~- 79 (378)
|+|..+- +.+.|+++++++-+ .|-.+...+.++.....+|.+.+|.|+|. .+++++....++.||+....+
T Consensus 221 FHp~~pl-llvaG~d~~lrifq------vDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 221 FHPTAPL-LLVAGLDGTLRIFQ------VDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred ecCCCce-EEEecCCCcEEEEE------ecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 4555333 34456666666655 44456667888888889999999999998 899999999999999654433
Q ss_pred --EeeccCCCe--eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394 80 --HCSKEHGEV--LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----- 145 (378)
Q Consensus 80 --~~~~~~~~~--~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----- 145 (378)
..+.++... ..... +|+..|..|.|.+....+++.+.++. -.+.|..++|+.++..|++++.+|.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 334444422 22222 89999999999999999999998886 4588999999999998888888877
Q ss_pred --------eeecCCCE--EEEEEecCCCEEEEEECCCeEEEEEcCC------ceeeeee---cCCceEEEEecCCCcccc
Q 046394 146 --------MLCHQGPV--SALAFHPNGHLMATSGKDCKIKIWDLRK------YEVLQTL---PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 146 --------~~~h~~~v--~~~~~sp~g~~l~t~~~d~~i~iwd~~~------~~~~~~~---~~~i~~~~~sp~g~~~~~ 206 (378)
.....+.| ++++.+++|.|||+||..|.|.|||..+ .+++.++ ...|+++.|+||+.+...
T Consensus 373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 11112333 5677889999999999999999999754 4556666 578999999999986322
Q ss_pred C------------CCCCceEEEeec--cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 207 G------------SHNYNRYMGYSM--VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 207 ~------------~~~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
. ......+..|.. ..-..|+||+|||.|.+||+|...|.+.+|
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 1 112222222221 023468999999999999999999976665
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.85 E-value=2.4e-20 Score=161.83 Aligned_cols=207 Identities=16% Similarity=0.135 Sum_probs=152.3
Q ss_pred eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-----Eeec-cCCC-eeEEEE-----EEEEEeCCCe
Q 046394 36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL-----HCSK-EHGE-VLKLQF-----LLASINKLGQ 103 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-----~~~~-~~~~-~~~l~~-----~l~s~~~d~~ 103 (378)
..-..+.+|+..|.++++.|.|..|++||.|..|++||+.|... +.+. .... +.++.| .|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34467888989999999999999999999999999999765321 2222 2222 388888 6666666678
Q ss_pred EEEEEcCCCcEEEE------------EecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------------eeecC
Q 046394 104 LRYQNVTMGEIVGN------------FWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------------MLCHQ 150 (378)
Q Consensus 104 i~iwd~~~~~~~~~------------~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------------~~~h~ 150 (378)
.+|+|-.-.+.+.. .++|...++|.+|+|++ ..|++++.||+ ..+-.
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999643332222 24677789999999988 58899999998 12234
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee---c---CCceEEEEecCCCc----------cccCCCC-C
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL---P---GHAKTLDFSRKDSG----------DFSGSHN-Y 211 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~---~---~~i~~~~~sp~g~~----------~~~~~~~-~ 211 (378)
-++++++|+|+|++||+|+.||+|.+||.++... ...+ | ..|+||+||+||.+ .+|+.+. .
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 5689999999999999999999999999866433 2222 3 47999999999986 5666543 3
Q ss_pred ceEEEeec-cCCcceeeeEEcCCCCeEEEecC
Q 046394 212 NRYMGYSM-VKGYQIGKVSFRPYEDVLGIGHS 242 (378)
Q Consensus 212 ~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~ 242 (378)
+++.++.+ ....+-+.++|||+.+++++|.+
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 34444433 13456788999999999998864
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1e-19 Score=149.01 Aligned_cols=216 Identities=11% Similarity=0.010 Sum_probs=156.8
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LK 90 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~ 90 (378)
.--.++.+.|++|++||+......-.+-.|.+.|+++.|.++-. .|++|+.||.|.+|+. .-..+.++++|.+. +.
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~ 132 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTD 132 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccce
Confidence 33455667899999999999999999999999999999999775 8999999999999994 45677899999986 88
Q ss_pred EEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------eeec--CCCE
Q 046394 91 LQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------MLCH--QGPV 153 (378)
Q Consensus 91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------~~~h--~~~v 153 (378)
++. +.++.+.|+.+++||+-+|+.-..+... ...+.+.|+|.|.+|+++..++. +..- ...+
T Consensus 133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~ 211 (362)
T KOG0294|consen 133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRI 211 (362)
T ss_pred eEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccc
Confidence 888 7788999999999999998765544332 33445999999999999888887 1111 1234
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCcee--eee-----------e--cCCceEEEEecCCCccccCCCCC-----ce
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQT-----------L--PGHAKTLDFSRKDSGDFSGSHNY-----NR 213 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~-----------~--~~~i~~~~~sp~g~~~~~~~~~~-----~~ 213 (378)
.++.|. ++.+|++|+.|+.|.+||..+..+ ... + +..-.-++.|.||.+.+|+.... .+
T Consensus 212 l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~ 290 (362)
T KOG0294|consen 212 LCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTL 290 (362)
T ss_pred eeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcce
Confidence 555553 455777777777777777764332 111 1 12223355667777777765443 45
Q ss_pred EEEeeccCCcceeeeEEcCCC
Q 046394 214 YMGYSMVKGYQIGKVSFRPYE 234 (378)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~g 234 (378)
+..+.. +.+++|+...-..
T Consensus 291 l~e~n~--~~RltCl~~~~~~ 309 (362)
T KOG0294|consen 291 LAELNT--NVRLTCLRVKLEK 309 (362)
T ss_pred eEEeec--CCccceeeehhhh
Confidence 555543 6778888877653
No 107
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.8e-21 Score=173.83 Aligned_cols=187 Identities=21% Similarity=0.286 Sum_probs=167.3
Q ss_pred EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----
Q 046394 21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF----- 93 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~----- 93 (378)
...+..+-+|.+.....+..+.+|..+|-|+.|+++..+|++|+.+|+|++|| ..+..++++.+|... ..+.|
T Consensus 46 Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 46 GGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred CCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence 33456667788877777888999999999999999999999999999999999 567788999999875 88889
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEe
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFH 159 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~s 159 (378)
++++++.|+.+.+||++...|...+.+|...+.++.|+|+|.++++++.|.. +..|.+.+.++.|+
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 8889999999999999988899999999999999999999999999999777 67799999999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccC
Q 046394 160 PNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 160 p~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~ 207 (378)
|..-++++||.|++|++||+++.+.+... ...|.++.|+|+|.....+
T Consensus 206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 99989999999999999999998888877 4789999999999864443
No 108
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=167.11 Aligned_cols=201 Identities=18% Similarity=0.170 Sum_probs=169.2
Q ss_pred cCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-e
Q 046394 12 AEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-L 89 (378)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~ 89 (378)
+.+.+..+..+.|.++++||..++++...+.+|.+.|.++...+ .++++|+.|.+|++|++ ++..++.+.+|.++ .
T Consensus 258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN 335 (537)
T ss_pred ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence 33567778888999999999999999999999999999998764 47888899999999995 58888999989887 8
Q ss_pred EEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCC
Q 046394 90 KLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQG 151 (378)
Q Consensus 90 ~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~ 151 (378)
++.. ++++|+.|++|.+||+.+++++.++.+|...|.++.+.+. ..+++|+.|+. +.+|..
T Consensus 336 ~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 336 CVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred EEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 8888 9999999999999999999999999999999999988877 89999999986 566777
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-c---CCceEEEEe--------cCCCccccCCCCCceEEEe
Q 046394 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-P---GHAKTLDFS--------RKDSGDFSGSHNYNRYMGY 217 (378)
Q Consensus 152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~---~~i~~~~~s--------p~g~~~~~~~~~~~~~~~~ 217 (378)
-|.++.+ .+++|++++.|++|++||..++++++++ . ..+..+++. .+|.+.+|+.....++..+
T Consensus 415 ~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 415 LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 7755554 5779999999999999999999999998 2 455555553 4566677766666555433
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=6.1e-19 Score=152.85 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=181.3
Q ss_pred eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----eeccCCC--eeEEEE--
Q 046394 22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH----CSKEHGE--VLKLQF-- 93 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~--~~~l~~-- 93 (378)
+.+..+.+||...+.+.-..+..+..|....|+|.+..|+.....|.+..|+..+..+. .+..+.. +.+++|
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 44678889999988888888888889999999997765555556789999996654432 2333433 489999
Q ss_pred --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------------
Q 046394 94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------------------- 145 (378)
Q Consensus 94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------------- 145 (378)
-++||..+|.|.||+..+.+.......|++.|.+++.-.+|.++. |+.|+.
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEE
Confidence 899999999999999988887777779999999999999998887 888776
Q ss_pred ----------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEE
Q 046394 146 ----------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTL 195 (378)
Q Consensus 146 ----------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~ 195 (378)
..+|......++.+|+.+.++|++.|+.++||+ ..+++.+. ..++.|+
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~ 413 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECA 413 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEe
Confidence 567888999999999999999999999999999 55555544 7899999
Q ss_pred EEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 196 DFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 196 ~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.|+|.|.. .+.+..+...+..+. ...+++.++|+|+|.+||+|+.|+.+.++
T Consensus 414 ~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 414 DFHPSGVVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred eccCcceEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 99998842 445556655555554 37889999999999999999999977654
No 110
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.85 E-value=9.1e-21 Score=150.32 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=157.4
Q ss_pred eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEeeccCCCe-eEEEE-----
Q 046394 22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD--GTELHCSKEHGEV-LKLQF----- 93 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~-~~l~~----- 93 (378)
..|-+-++||.-++..++++.. ..-|.+++|+.|.++|++|+.+..++|||++ ..+...+.+|.+. ..+.|
T Consensus 78 aadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~ 156 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK 156 (334)
T ss_pred cccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence 3455678899999999888864 4688999999999999999999999999953 4566788999876 77778
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------ee--ecCCCEEEEEEecC
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------ML--CHQGPVSALAFHPN 161 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------~~--~h~~~v~~~~~sp~ 161 (378)
.|++++.|++|++||.+++..++++. ...+|+++.++++|.+|.++...+. +. .-...|.+..++|+
T Consensus 157 ~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~ 235 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK 235 (334)
T ss_pred eEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC
Confidence 78888999999999999999999886 4588999999999999998887776 11 22456888999999
Q ss_pred CCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCCC
Q 046394 162 GHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSHN 210 (378)
Q Consensus 162 g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~~ 210 (378)
...+++|+.|..++.||..++..+..+ +++|.|+.|+|||........+
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 999999999999999999999998776 5899999999999654444433
No 111
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=9.3e-20 Score=162.00 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=97.2
Q ss_pred ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe--eEEEE-----
Q 046394 23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV--LKLQF----- 93 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~--~~l~~----- 93 (378)
..+.+++||+.+++..+.+.+|...|.++.|+.||.+|++++.|..|+||| ..+.++....+|.+. ..+.|
T Consensus 148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE 227 (1012)
T ss_pred cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence 347789999999999999999999999999999999999999999999999 567888888999886 67777
Q ss_pred EEEEEeCC----CeEEEEEcCC-CcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394 94 LLASINKL----GQLRYQNVTM-GEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 94 ~l~s~~~d----~~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~ 145 (378)
.|++.+.+ ..|++||.+. +.++.++.. ..-.|.---|.||.++++.++....
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~ 285 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTN 285 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcc
Confidence 55555543 5689999876 345555443 2244666678999887776665443
No 112
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.7e-19 Score=158.07 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=173.8
Q ss_pred eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEeeccCCC--eeEEEE----EEEEEeCCCeEEEEEcCCC
Q 046394 41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCSKEHGE--VLKLQF----LLASINKLGQLRYQNVTMG 112 (378)
Q Consensus 41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~--~~~l~~----~l~s~~~d~~i~iwd~~~~ 112 (378)
+.....+|.+||||...+.||.+-.+|.|.||++... ....+.++.. +-+++| .|.+.+.+|.|.-||+.++
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence 3344578999999999999999999999999995433 3345666654 388999 8999999999999999999
Q ss_pred cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEE
Q 046394 113 EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKI 176 (378)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~i 176 (378)
++...+....+.|++++.+|.+..+++|++||. +....+.|.+++|+|++..+++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 999999988999999999999999999999998 3445689999999999999999999999999
Q ss_pred EEcCCceeeeee-------c----CCceEEEEecCC---------CccccCCCCCceEEEeeccCCcceeeeEEcCCCCe
Q 046394 177 WDLRKYEVLQTL-------P----GHAKTLDFSRKD---------SGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV 236 (378)
Q Consensus 177 wd~~~~~~~~~~-------~----~~i~~~~~sp~g---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 236 (378)
||..++..++.. . .-++++.|-.++ ...+|+...+.++..+.. |..-|.+++-.+++..
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~-h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC-HDADVLALAVADNEDR 259 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh-hhcceeEEEEcCCCCe
Confidence 999998876622 1 234666555544 458999999999999988 8888999999999999
Q ss_pred EEEecCCCeEE
Q 046394 237 LGIGHSMGVSG 247 (378)
Q Consensus 237 l~~~~~~g~~~ 247 (378)
+.+++-|+.+.
T Consensus 260 vfsaGvd~~ii 270 (691)
T KOG2048|consen 260 VFSAGVDPKII 270 (691)
T ss_pred EEEccCCCceE
Confidence 99888888553
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.9e-21 Score=173.75 Aligned_cols=215 Identities=18% Similarity=0.282 Sum_probs=182.2
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLA 96 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~ 96 (378)
+-.+++||. ..+..|...|.++..-..++.+++|+.|..+-+|.. .-..+..|.+|..+ -++.| +|+
T Consensus 13 ~t~Lr~~~~------~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 13 ATKLRVWDT------REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred eeccccccc------hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhc
Confidence 334556664 345567778888887667789999999999999994 34556678999987 88988 899
Q ss_pred EEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCC
Q 046394 97 SINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNG 162 (378)
Q Consensus 97 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g 162 (378)
+|+.+|+|++||+..++.++++.+|...+..+.|+|-+.+++.|+.|.. +.+|...|.++.|+|+|
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 9999999999999999999999999999999999999999999998877 56788889999999999
Q ss_pred CEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecC----------CCccccCCCCCceEEEeeccCCcceeeeE
Q 046394 163 HLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRK----------DSGDFSGSHNYNRYMGYSMVKGYQIGKVS 229 (378)
Q Consensus 163 ~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~----------g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (378)
+++++++.|.+++|||+..|+.+..| .+.+.++.|+|. +...+|+.++.+.+..... ....|.++.
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-~~~~v~~~~ 245 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-ETDGVRSLA 245 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC-ccCCceeee
Confidence 99999999999999999999999999 378888888884 3458888888777777666 567899999
Q ss_pred EcCCCCeEEEecCCCe
Q 046394 230 FRPYEDVLGIGHSMGV 245 (378)
Q Consensus 230 ~sp~g~~l~~~~~~g~ 245 (378)
|+|+|..+++|.....
T Consensus 246 fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 246 FNPDGKIVLSGEQISL 261 (825)
T ss_pred ecCCceeeecCchhhh
Confidence 9999998888877654
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=7.2e-20 Score=148.56 Aligned_cols=229 Identities=16% Similarity=0.210 Sum_probs=165.1
Q ss_pred CCCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC---CEEEEEeCCCcEEEEe-CCC
Q 046394 1 WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG---RYMAAAGCKGYPYFYN-RDG 76 (378)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g---~~l~~~~~dg~i~iwd-~~~ 76 (378)
+++|.|+|.+.+++.|.++ ++||..|.+....+... +.|++-++||-. .+||+|..+-.|++-| .+|
T Consensus 108 ~WyP~DtGmFtssSFDhtl--------KVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 108 IWYPIDTGMFTSSSFDHTL--------KVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred EEeeecCceeecccccceE--------EEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 4789999999987776655 56677788777777764 789999999854 3678888899999999 688
Q ss_pred CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC-cEEEEEecCCC-CeeEEEEcCCCCEEEEEcCCCeee
Q 046394 77 TELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG-EIVGNFWTGLG-RTDVIRVNPFNGVVSLGHSGGTML 147 (378)
Q Consensus 77 ~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~~~ 147 (378)
...+++.+|.+. .++.| .|++|+.||.|++||++.. .+...+..|.. ....+.- -.
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~---------------n~ 243 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT---------------NT 243 (397)
T ss_pred cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccc---------------cc
Confidence 999999999975 99999 8999999999999999875 56777766653 1111111 13
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee-eeee----cCC-------ce-----EEEEec-CCCccccCCC
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV-LQTL----PGH-------AK-----TLDFSR-KDSGDFSGSH 209 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~-~~~~----~~~-------i~-----~~~~sp-~g~~~~~~~~ 209 (378)
.|.+.|..++|+.+|.++++++.|..+++|+..+|+. +..+ +.. +. .+.+-| ++...+.+..
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~ 323 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL 323 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc
Confidence 7999999999999999999999999999999988764 2322 111 11 112222 2333455555
Q ss_pred CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394 210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF 266 (378)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~ 266 (378)
.+..+..+.. |...|.+..|.|+=+.+ .+|+.|+++..|-..++
T Consensus 324 sgs~ir~l~~-h~k~i~c~~~~~~fq~~------------~tg~~d~ni~~w~p~l~ 367 (397)
T KOG4283|consen 324 EGSFVRRLST-HLKRINCAAYRPDFEQC------------FTGDMNGNIYMWSPALK 367 (397)
T ss_pred CceEEEeeec-ccceeeEEeecCchhhh------------hccccCCcccccccccc
Confidence 6666667777 67778888887776444 45555556666654333
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=1.7e-19 Score=161.80 Aligned_cols=222 Identities=12% Similarity=0.080 Sum_probs=184.3
Q ss_pred eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCCe--eEEEE------EEEEEeCCCeE
Q 046394 36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGEV--LKLQF------LLASINKLGQL 104 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~~l~~------~l~s~~~d~~i 104 (378)
+....+.+|...|..+++.+. .+++++|.||++++|+..+.. .+.+.+|.+. ..++| .+++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 446788999999998887764 489999999999999954433 3557777775 33677 69999999999
Q ss_pred EEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394 105 RYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPNGHLMATSGKDC 172 (378)
Q Consensus 105 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~d~ 172 (378)
.+|...+..++.++.+|...|.++....++. +++|+-|.+ +.+|+..|.++.+-|++ .++|||.|.
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 9999999999999999999999999988888 999999988 78999999999999987 899999999
Q ss_pred eEEEEEcCCceeeeee--c-CCceEEEE---------ecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394 173 KIKIWDLRKYEVLQTL--P-GHAKTLDF---------SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIG 240 (378)
Q Consensus 173 ~i~iwd~~~~~~~~~~--~-~~i~~~~~---------sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 240 (378)
+|++|.- ++++.+| | ..|..+++ +.||.+..|+. ++..+..+.+ |.+-|++++..+++..++++
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHG-HTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeec-cceEEEEEEecCCCCeEEEe
Confidence 9999975 6777777 3 44555544 55677789987 6777778888 99999999988888999999
Q ss_pred cCCCeEEEE---------------------------EcCCCCcccccccCC
Q 046394 241 HSMGVSGIL---------------------------IPGSGEPNFDSWVAN 264 (378)
Q Consensus 241 ~~~g~~~~~---------------------------~~~s~d~~i~~w~~~ 264 (378)
+.|+.+.+| +.|++|+.+++|...
T Consensus 238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 999977643 567778888888654
No 116
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=151.72 Aligned_cols=208 Identities=15% Similarity=0.162 Sum_probs=151.2
Q ss_pred CCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEee
Q 046394 4 PSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCS 82 (378)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~ 82 (378)
.++-.||++.+.|.|.-+|. -+.|.. -+..+++.+|..+|.-+.||||.++|++|+.+..+.+||. +|...+.+
T Consensus 233 S~nGkyLAsaSkD~Taiiw~----v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y 307 (519)
T KOG0293|consen 233 SHNGKYLASASKDSTAIIWI----VVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY 307 (519)
T ss_pred cCCCeeEeeccCCceEEEEE----EecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence 34456788777887777775 122322 4567899999999999999999999999999999999995 45555555
Q ss_pred ccCCC--eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394 83 KEHGE--VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT--------- 145 (378)
Q Consensus 83 ~~~~~--~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~--------- 145 (378)
....+ +.+++| .+++|+.|+++..||+. |.......+- ...|.+++.++||.++++.+.|..
T Consensus 308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 43322 388888 99999999999999984 5544444432 245788888888887777666554
Q ss_pred ----------------------------------------------eeecCCC--EEEEEEec-CCCEEEEEECCCeEEE
Q 046394 146 ----------------------------------------------MLCHQGP--VSALAFHP-NGHLMATSGKDCKIKI 176 (378)
Q Consensus 146 ----------------------------------------------~~~h~~~--v~~~~~sp-~g~~l~t~~~d~~i~i 176 (378)
+.||... |..-+|-. +..++++||.|+.|+|
T Consensus 387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI 466 (519)
T KOG0293|consen 387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI 466 (519)
T ss_pred hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence 4455433 33334544 4578999999999999
Q ss_pred EEcCCceeeeee--c-CCceEEEEecCCCccccCCCCCceEEEe
Q 046394 177 WDLRKYEVLQTL--P-GHAKTLDFSRKDSGDFSGSHNYNRYMGY 217 (378)
Q Consensus 177 wd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~~~~~~~ 217 (378)
|+..+|+++..+ | ..+++++|+|.....+....+...+..|
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 999999999999 4 6789999999766544444444444433
No 117
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=166.38 Aligned_cols=175 Identities=14% Similarity=0.173 Sum_probs=142.2
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE------EEEEEeCCCeEEEEEcC
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF------LLASINKLGQLRYQNVT 110 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~ 110 (378)
+..+.+|.+.|..|.||.++ +|++++.|.+|++|++ ...++.+|....-++|++| +|++|+-|+.|+||++.
T Consensus 362 ~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred hhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 44578999999999999865 8999999999999995 5567777765555699999 99999999999999998
Q ss_pred CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeec------CCCEEEEEEec-CCCEEEE
Q 046394 111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCH------QGPVSALAFHP-NGHLMAT 167 (378)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h------~~~v~~~~~sp-~g~~l~t 167 (378)
..+.+.-.. -..-|++++|.|||++.++|+.+|. +..| ...|+.+.|.| +...+++
T Consensus 441 d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 777665443 3488999999999999999999998 1111 23799999998 4446888
Q ss_pred EECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCccccCCCCCceE
Q 046394 168 SGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSGDFSGSHNYNRY 214 (378)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~~~~~~~~~~~~ 214 (378)
.+.|..|||||+++..+++.| ...-....|+.||++.+....+...|
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 889999999999998888888 23457789999999988777554444
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.9e-19 Score=142.39 Aligned_cols=192 Identities=11% Similarity=0.142 Sum_probs=152.6
Q ss_pred eeeEEEeccceeeeeecccc---eeeEEeecCCCCceEEEEcC--CCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCC
Q 046394 16 EKTWRIKQEAIAREVDILSS---RNQYDIMLPELGPYTLDFTS--SGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGE 87 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~---~~~~~l~~~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~ 87 (378)
.+...-+.|++|+|+.+... +.+.+|.+|.++|..++|.. -|.+||+++.||.|.||...+.. ......|..
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~ 103 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSA 103 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcc
Confidence 45566677888888888665 45788999999999999976 78999999999999999955443 345567776
Q ss_pred e-eEEEE-------EEEEEeCCCeEEEEEcCCC-c--EEEEEecCCCCeeEEEEcCC---C-----------CEEEEEcC
Q 046394 88 V-LKLQF-------LLASINKLGQLRYQNVTMG-E--IVGNFWTGLGRTDVIRVNPF---N-----------GVVSLGHS 142 (378)
Q Consensus 88 ~-~~l~~-------~l~s~~~d~~i~iwd~~~~-~--~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~ 142 (378)
. ++++| .|++++.||.|.|.+.++. . .......|.-.|++++|.|. | ..|++|+.
T Consensus 104 SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc 183 (299)
T KOG1332|consen 104 SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC 183 (299)
T ss_pred cceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC
Confidence 5 99999 8999999999999998764 2 22334468888999999997 4 35888888
Q ss_pred CCe----------------eeecCCCEEEEEEecCC----CEEEEEECCCeEEEEEcCC------ceeeeeecCCceEEE
Q 046394 143 GGT----------------MLCHQGPVSALAFHPNG----HLMATSGKDCKIKIWDLRK------YEVLQTLPGHAKTLD 196 (378)
Q Consensus 143 d~~----------------~~~h~~~v~~~~~sp~g----~~l~t~~~d~~i~iwd~~~------~~~~~~~~~~i~~~~ 196 (378)
|.. +.+|.+.|..++|.|.- .+||+||.||+|.||..+. .+++..|+..+..++
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vS 263 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVS 263 (299)
T ss_pred ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEE
Confidence 876 78899999999999953 4699999999999998763 234445578899999
Q ss_pred EecCCCccccC
Q 046394 197 FSRKDSGDFSG 207 (378)
Q Consensus 197 ~sp~g~~~~~~ 207 (378)
||+.|.+....
T Consensus 264 WS~sGn~LaVs 274 (299)
T KOG1332|consen 264 WSLSGNILAVS 274 (299)
T ss_pred EeccccEEEEe
Confidence 99998764443
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.3e-18 Score=133.38 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=154.9
Q ss_pred CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-------C-----Ce-E---EeeccCCCe-eEEEE-----EEEEEeCC
Q 046394 44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-------G-----TE-L---HCSKEHGEV-LKLQF-----LLASINKL 101 (378)
Q Consensus 44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-------~-----~~-~---~~~~~~~~~-~~l~~-----~l~s~~~d 101 (378)
.+..|.+++|+|.|.+.|+|+...+++|-... + .+ . ..-+.|.+. .|.+| ++++|++|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 35789999999999999999999999887521 1 11 1 122456665 99999 99999999
Q ss_pred CeEEEEEcCCCcE-----EEEEecCCCCeeEEEEcCC----CCEEEEEcCCCe---------------eeecCCCEEEEE
Q 046394 102 GQLRYQNVTMGEI-----VGNFWTGLGRTDVIRVNPF----NGVVSLGHSGGT---------------MLCHQGPVSALA 157 (378)
Q Consensus 102 ~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d~~---------------~~~h~~~v~~~~ 157 (378)
.+|++.-.....+ -..|.-|.+.|..++|-.+ +.+|++++.... +.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 9999986654322 3356678899999999754 346666655443 77899988886
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCceeeeee----------cCCceEEEEecCCCc----------cccCCCCCceEEEe
Q 046394 158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGY 217 (378)
Q Consensus 158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~ 217 (378)
++-+|-.+++|+.|.+|++||++-..++.++ .+.+.+++..|.|+. .+++.+.+.+++.+
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence 4446889999999999999999998888887 146889999999986 45566677777888
Q ss_pred eccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394 218 SMVKGYQIGKVSFRPYEDVLGIGHSMGVSG 247 (378)
Q Consensus 218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~ 247 (378)
.. |...|.++.|||...||.+++.|..+.
T Consensus 270 ~p-hsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 270 HP-HSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred CC-CccceeEEEeCCCceEEEEecccceEE
Confidence 77 899999999999997766666665443
No 120
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=7.4e-19 Score=148.53 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=178.2
Q ss_pred CCCCCCeeecCCceeeEEEeccceeeeeecc---cceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC----
Q 046394 3 MPSEGGYLEAEGVEKTWRIKQEAIAREVDIL---SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---- 75 (378)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~---~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---- 75 (378)
.++..+.|+++|.|.-+++|.-+. .-+-. +-+-...|..|..+|+++.|+|+|..||+|+.+|.|.+|-..
T Consensus 22 q~n~~~~laT~G~D~~iriW~v~r--~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 22 QKNSLNKLATAGGDKDIRIWKVNR--SEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred ccCcccceecccCccceeeeeeee--cCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 344455777777777666665111 00000 112345678899999999999999999999999999999843
Q ss_pred ----C---------CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE
Q 046394 76 ----G---------TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV 136 (378)
Q Consensus 76 ----~---------~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 136 (378)
+ .....+.+|..- ..++| ++++++.|..+++||+..|+....+..|...+..++|.|-+++
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 2 123456777764 88999 9999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCe-----------e----------------------eecCC----CEEEEEEecCCCEEEEEEC----CC---
Q 046394 137 VSLGHSGGT-----------M----------------------LCHQG----PVSALAFHPNGHLMATSGK----DC--- 172 (378)
Q Consensus 137 l~~~~~d~~-----------~----------------------~~h~~----~v~~~~~sp~g~~l~t~~~----d~--- 172 (378)
+++-+.|.. . ..|.. -...++|+|+|.+|++.+. ++
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~ 259 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF 259 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence 999888874 0 01111 1245689999999987542 22
Q ss_pred --eEEEEEcCC-ceeeeee---cCCceEEEEecCC---------------------------CccccCCCCCceEEEeec
Q 046394 173 --KIKIWDLRK-YEVLQTL---PGHAKTLDFSRKD---------------------------SGDFSGSHNYNRYMGYSM 219 (378)
Q Consensus 173 --~i~iwd~~~-~~~~~~~---~~~i~~~~~sp~g---------------------------~~~~~~~~~~~~~~~~~~ 219 (378)
+.++|+-.. .+++..+ ..+...+.|+|-- ...+++.++..++.....
T Consensus 260 ~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n 339 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN 339 (434)
T ss_pred eceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEee
Confidence 234454332 2233333 2334455555511 125667777777776665
Q ss_pred cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394 220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSG 254 (378)
Q Consensus 220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~ 254 (378)
-|-.+|++++|++||.+|++++.||+..++..+..
T Consensus 340 ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 340 IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 58889999999999999999999999888764443
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.83 E-value=4.4e-19 Score=159.18 Aligned_cols=230 Identities=14% Similarity=0.084 Sum_probs=181.2
Q ss_pred CceeeEEEeccceeeeeecccceee--EEeecCCCCceE-EEEcC-CCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394 14 GVEKTWRIKQEAIAREVDILSSRNQ--YDIMLPELGPYT-LDFTS-SGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV 88 (378)
Q Consensus 14 ~~~~~~~~~~~~~i~~~d~~~~~~~--~~l~~~~~~v~~-~~~sp-~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~ 88 (378)
.....+..+.|+++++|+-...+.+ ..+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|. ....++..+.+|..-
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn 103 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN 103 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc
Confidence 3344566667888899987555433 456667677765 88875 444699999999999999 556788999999975
Q ss_pred -eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCC
Q 046394 89 -LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQG 151 (378)
Q Consensus 89 -~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~ 151 (378)
.++.. .+++||.|.++++|-. +++...+.+|...|++++.-|++ .+++|+.|.. +.+|.+
T Consensus 104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD 180 (745)
T KOG0301|consen 104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTD 180 (745)
T ss_pred eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchh
Confidence 66765 8899999999999975 66777899999999999999999 8889999887 889999
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec----------CCCccccCCCCCceEEEee
Q 046394 152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR----------KDSGDFSGSHNYNRYMGYS 218 (378)
Q Consensus 152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp----------~g~~~~~~~~~~~~~~~~~ 218 (378)
-|..+++-|++ .|++|+.||.|++||+ +|.++..+ | ..+.+++..+ |+...+|... .+.....
T Consensus 181 ~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~ 256 (745)
T KOG0301|consen 181 CVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT 256 (745)
T ss_pred heeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence 99999999875 5899999999999999 77887777 3 5677777433 3334777755 4555555
Q ss_pred ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394 219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~ 252 (378)
. .+..|+++.+-++|+ +++|++||.+++|...
T Consensus 257 l-PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 257 L-PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred c-CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 4 566799999998885 6788899999888644
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=5.6e-19 Score=151.43 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=130.5
Q ss_pred eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE----EE
Q 046394 22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF----LL 95 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~----~l 95 (378)
..+..+.||+..+.+.+..+.+|.+.|.+++|--..+.|++++.|+.|++|+++. ..+.++.+|.+. .++.. .+
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~ 300 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC 300 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence 4466778999999999999999999999999988778999999999999999654 456678888875 66666 44
Q ss_pred E-EEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------------e--ee
Q 046394 96 A-SINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------M--LC 148 (378)
Q Consensus 96 ~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------~--~~ 148 (378)
+ +|+.|.++++|++. ......+.++.+.+.|++|-.+ ..|++|+.+|. + ..
T Consensus 301 vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred EEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 4 45599999999994 3445567788889999998754 46788999998 1 12
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
++.+|++++..|...++|+|+.+|.|++|-+..+
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 2348999999999999999999999999998775
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.7e-18 Score=141.46 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=152.4
Q ss_pred eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCeeEEEE--
Q 046394 17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEVLKLQF-- 93 (378)
Q Consensus 17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~l~~-- 93 (378)
..+...-|+.|+.+|+.++.. ..+..|..+|.||.+++....+++||.|++|++||... .....+.....+.++..
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g 145 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG 145 (323)
T ss_pred eEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC
Confidence 566777799999999988876 56778899999999999888999999999999999543 33344554555677777
Q ss_pred -EEEEEeCCCeEEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecC--
Q 046394 94 -LLASINKLGQLRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQ-- 150 (378)
Q Consensus 94 -~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~-- 150 (378)
.|+.|+.|..+.+||+++-....+.. .-.-.+.|+++.|++.-+++++-+|. +..|.
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~ 225 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS 225 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence 88889999999999998754333221 12356889999998888899998887 55564
Q ss_pred -------CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCc
Q 046394 151 -------GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGY 223 (378)
Q Consensus 151 -------~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~ 223 (378)
.+|++|+|+|-...|+||+.||.|.+||+.+.+.+..+ .. ...
T Consensus 226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~-----------------------------~~-~~~ 275 (323)
T KOG1036|consen 226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL-----------------------------AK-YET 275 (323)
T ss_pred cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc-----------------------------cC-CCC
Confidence 47999999998889999999999999999775433322 11 223
Q ss_pred ceeeeEEcCCCCeEEEecCC
Q 046394 224 QIGKVSFRPYEDVLGIGHSM 243 (378)
Q Consensus 224 ~v~~~~~sp~g~~l~~~~~~ 243 (378)
.|.+++|+.+|..||++++-
T Consensus 276 SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 276 SISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ceEEEEeccCCCeEEEEech
Confidence 47888888888888877653
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=7.6e-20 Score=158.35 Aligned_cols=202 Identities=14% Similarity=0.101 Sum_probs=154.7
Q ss_pred ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEeeccCC---Ce-eEEEE----EEEEEeCCCeEEEEEc
Q 046394 42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----TELHCSKEHG---EV-LKLQF----LLASINKLGQLRYQNV 109 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~---~~-~~l~~----~l~s~~~d~~i~iwd~ 109 (378)
-.|..-|.++++|...++++||+ .|.|+|||+.+ .++..+..-. -+ +|.-+ .|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 35666677899999889999997 46899999654 3344444432 23 33333 7888999999999999
Q ss_pred CCCcEE--EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394 110 TMGEIV--GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 110 ~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~ 173 (378)
....+. ..+....-.+.+++.+||.++.+++..||. +.+|.+.+.||.++++|..|-||+-|++
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 865543 233333356778999999999999998887 8899999999999999999999999999
Q ss_pred EEEEEcCCceeeeee--cCCceEEEEecCCCccccCCCCCce----------EEEeeccCCcceeeeEEcCCCCeEEEec
Q 046394 174 IKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNR----------YMGYSMVKGYQIGKVSFRPYEDVLGIGH 241 (378)
Q Consensus 174 i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 241 (378)
||.||++.+..+... .+.|-++.++|.+.+.......... +..+ . |.+.|.++.|.+.|+++++.+
T Consensus 575 vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh-l-heScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH-L-HESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeec-c-cccEEEEEEecccCceeeecC
Confidence 999999999887666 6889999999999985554433322 2222 2 788899999999997776666
Q ss_pred CCCeE
Q 046394 242 SMGVS 246 (378)
Q Consensus 242 ~~g~~ 246 (378)
.|...
T Consensus 653 kDnlL 657 (705)
T KOG0639|consen 653 KDNLL 657 (705)
T ss_pred chhhh
Confidence 66533
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.2e-18 Score=139.95 Aligned_cols=203 Identities=18% Similarity=0.239 Sum_probs=151.8
Q ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
...|.++.|+|.+..|++++.||++++||.....+.....|..+ .+++| .+++|+.||.|+.+|+.++... .+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QIG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcce-eec
Confidence 57899999999999999999999999999776666655566666 99999 8999999999999999887754 455
Q ss_pred cCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394 120 TGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ 186 (378)
Q Consensus 120 ~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~ 186 (378)
.|...+.||.+++-...+++|+-|+. .......|.++..+ |+.|+.|+.|..|.+||+++.....
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh
Confidence 78899999999999999999999988 11223467777664 7789999999999999999866543
Q ss_pred ee-----cCCceEEEEecCCCc------------cccCCC--CCceEEEeec--------cCCcceeeeEEcCCCCeEEE
Q 046394 187 TL-----PGHAKTLDFSRKDSG------------DFSGSH--NYNRYMGYSM--------VKGYQIGKVSFRPYEDVLGI 239 (378)
Q Consensus 187 ~~-----~~~i~~~~~sp~g~~------------~~~~~~--~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~ 239 (378)
.. .-.+.++++-|++.- ...+.. ....-+.++. ....||++++|+|--..||+
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 32 457888998885431 111111 0011122222 01248999999999877777
Q ss_pred ecCCCeEEEEE
Q 046394 240 GHSMGVSGILI 250 (378)
Q Consensus 240 ~~~~g~~~~~~ 250 (378)
|+.||++.+|.
T Consensus 250 gGsDG~V~~Wd 260 (323)
T KOG1036|consen 250 GGSDGIVNIWD 260 (323)
T ss_pred cCCCceEEEcc
Confidence 77777665554
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=5.7e-18 Score=146.91 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=144.2
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------eEE-ee
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT------------ELH-CS 82 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~------------~~~-~~ 82 (378)
+.++...+++.|.+|+..+.+-......|+++|++++.-.+|.+ ++|+.|..|..||-+-+ .++ .+
T Consensus 258 gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 258 GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 34566667899999999888888887899999999999999975 55999999999992111 111 11
Q ss_pred c----------------------------cCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEE
Q 046394 83 K----------------------------EHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVI 128 (378)
Q Consensus 83 ~----------------------------~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 128 (378)
. +|.+. ..++. +++|++.|+++++|+ ..++..+.. -..++.|+
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~ 413 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECA 413 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEe
Confidence 1 22221 22222 899999999999999 444444432 34788999
Q ss_pred EEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-ceeeeee----cC
Q 046394 129 RVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTL----PG 190 (378)
Q Consensus 129 ~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~~~~~----~~ 190 (378)
.|+|.| .+|+|+..|. +...+.++++++|+|+|.+||.|+.|+.|+||-+.. +.....+ .+
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs 492 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS 492 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc
Confidence 999999 9999998887 233378999999999999999999999999998865 4444444 47
Q ss_pred CceEEEEecCCCccccCCCCCc
Q 046394 191 HAKTLDFSRKDSGDFSGSHNYN 212 (378)
Q Consensus 191 ~i~~~~~sp~g~~~~~~~~~~~ 212 (378)
+|+.+.||+|+++...+..+.+
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred eeEEeeecCCCceEEeccCceE
Confidence 8999999999997444433333
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=2.9e-18 Score=153.89 Aligned_cols=239 Identities=15% Similarity=0.105 Sum_probs=173.2
Q ss_pred CCeeecCCceeeEEEeccceeeeeeccc------------c----eee----------EEeecCCCCceEEEEcCCCCEE
Q 046394 7 GGYLEAEGVEKTWRIKQEAIAREVDILS------------S----RNQ----------YDIMLPELGPYTLDFTSSGRYM 60 (378)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~i~~~d~~~------------~----~~~----------~~l~~~~~~v~~~~~sp~g~~l 60 (378)
.-+|++++.|+++++|. |.+++... . ... ..+.+|.+.|+++.|+|.+..|
T Consensus 206 ~~~laS~SQD~yIRiW~---i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWR---IVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred cEEEEecCCceEEEEEE---EEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 45677777888888876 44444211 0 001 1134899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCC---eEE--e---eccCCC-eeEEEE-----EEEEEeCCCeEEEEEcCCC---cEEEEEecCCC
Q 046394 61 AAAGCKGYPYFYNRDGT---ELH--C---SKEHGE-VLKLQF-----LLASINKLGQLRYQNVTMG---EIVGNFWTGLG 123 (378)
Q Consensus 61 ~~~~~dg~i~iwd~~~~---~~~--~---~~~~~~-~~~l~~-----~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~ 123 (378)
++++.|.++.+|..... =+. . +.+..+ ..+..| .+++-+..|-.++|-..+. .....+.+|..
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD 362 (764)
T ss_pred eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence 99999999999995332 111 1 222222 255555 6888888999999983321 23344568899
Q ss_pred CeeEEEEcCCCCEEEEEcCCCe----------------------------------------------------------
Q 046394 124 RTDVIRVNPFNGVVSLGHSGGT---------------------------------------------------------- 145 (378)
Q Consensus 124 ~v~~~~~s~~~~~l~~~~~d~~---------------------------------------------------------- 145 (378)
.|..++|+|.|.+|++.+.|.+
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence 9999999999999999998877
Q ss_pred ------------------------------------------------------------------------------ee
Q 046394 146 ------------------------------------------------------------------------------ML 147 (378)
Q Consensus 146 ------------------------------------------------------------------------------~~ 147 (378)
+.
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 88
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCC-----eEEEEEcCCceeeeee--c-CCceEEEEecCCCccccCCCCCc-------
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDC-----KIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSGDFSGSHNYN------- 212 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~-----~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~~------- 212 (378)
||...|.+++.+|+|+++||++... .|++|+..+......+ | -.|+.+.|||||++.+.-.+++.
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 9999999999999999999998654 6999999987777766 4 57999999999998443322221
Q ss_pred -------eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 213 -------RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 213 -------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.+...+. |..-|.++.|+|++.++|+++.|..+.+|
T Consensus 603 ~~~~~e~~fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 603 EDIKDEFRFACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred cccchhhhhccccc-cceEEEEcccCcccceeEEecCCceEEEE
Confidence 1112334 88889999999999666666555544444
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.7e-18 Score=139.95 Aligned_cols=231 Identities=12% Similarity=-0.002 Sum_probs=170.5
Q ss_pred eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE---
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF--- 93 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~--- 93 (378)
......+|.+-+||+.|......+.+|..+|.|++||+||+.|+|+|.|..|.+|| ..|.+++.++-...+....|
T Consensus 38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~ 117 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPR 117 (405)
T ss_pred eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccc
Confidence 44556789999999999998889999999999999999999999999999999999 78888888887777777777
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEec-C----CCCeeEEEEcCCCCEEEEEcCCCe---eeec------------C
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWT-G----LGRTDVIRVNPFNGVVSLGHSGGT---MLCH------------Q 150 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~~~~d~~---~~~h------------~ 150 (378)
.++++-.+..-.+.++..+... .+.. . .....+..|.+.|+++++|...|. +..| .
T Consensus 118 k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~ 196 (405)
T KOG1273|consen 118 KRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV 196 (405)
T ss_pred cCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh
Confidence 3333333333445555442211 1111 1 122334568999999999999998 1111 2
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCC-------ce--eeeee-----cCCceEEEEecCCCc-----------cc
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK-------YE--VLQTL-----PGHAKTLDFSRKDSG-----------DF 205 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-------~~--~~~~~-----~~~i~~~~~sp~g~~-----------~~ 205 (378)
..|..+.|+..|.+|++-+.|..||.|++.. ++ +.+.+ .....+++||.+|.| .+
T Consensus 197 ~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI 276 (405)
T KOG1273|consen 197 QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYI 276 (405)
T ss_pred eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEE
Confidence 4567788999999999999999999999862 12 22333 356688999999986 67
Q ss_pred cCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 206 SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
|....+.++..+.|..+....++.|+|-...+++- ..|.+.+|.
T Consensus 277 WE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 277 WEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 88778888888766445678899999998776665 555555554
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=2e-18 Score=149.65 Aligned_cols=221 Identities=11% Similarity=0.061 Sum_probs=164.9
Q ss_pred Eeccceeeeeecccce---eeEEeec--CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---eeccCCC-eeEE
Q 046394 21 IKQEAIAREVDILSSR---NQYDIML--PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH---CSKEHGE-VLKL 91 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~---~~~~l~~--~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~-~~~l 91 (378)
-...+-|+|||+.... .+..|.. ...-+.++.++|||+.|++|+.-.++.|||+...-.+ .+..... ..++
T Consensus 436 TgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL 515 (705)
T KOG0639|consen 436 TGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 515 (705)
T ss_pred ecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh
Confidence 3446889999997553 3344443 3456889999999999999999999999995432221 1222111 1334
Q ss_pred EE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------e--eecCCCE
Q 046394 92 QF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------M--LCHQGPV 153 (378)
Q Consensus 92 ~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------~--~~h~~~v 153 (378)
+. +.++|..||.|.|||+.+...++.|.+|.+.+.||.+++||..|.+|+.|.+ + ......|
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 44 7778889999999999999999999999999999999999999999999998 2 2335679
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCcccc----------CCCCCceEEEeecc
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFS----------GSHNYNRYMGYSMV 220 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~----------~~~~~~~~~~~~~~ 220 (378)
.++..+|++.+++.|-.++.+-|......+ -+.+ .+.|-++.|++.|++.+. ...-+..++...
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-- 672 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-- 672 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--
Confidence 999999999999999999988887765433 2333 477899999999997443 333333333332
Q ss_pred CCcceeeeEEcCCCCeEEEecCCC
Q 046394 221 KGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 221 ~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
..+.|.++..|.|.+++++|+.+.
T Consensus 673 E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 673 ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred ccCcceeeeeccCceEEEecCCCc
Confidence 467899999999996666666554
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=146.08 Aligned_cols=187 Identities=18% Similarity=0.237 Sum_probs=131.3
Q ss_pred ccceeeeeecccceee---EEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CC--CeEEeeccCCC-eeEEEE-
Q 046394 23 QEAIAREVDILSSRNQ---YDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DG--TELHCSKEHGE-VLKLQF- 93 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~---~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~-~~~l~~- 93 (378)
+...|++|...++.-. ..+.+|+..|-.++|||.. ..||+||.||+|+|||. .+ ......+.|.+ ++.+.|
T Consensus 232 c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN 311 (440)
T ss_pred cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence 3456777777777543 3466799999999999965 58999999999999994 33 12233367765 499999
Q ss_pred ----EEEEEeCCCeEEEEEcCC---CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec-CCCEE
Q 046394 94 ----LLASINKLGQLRYQNVTM---GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP-NGHLM 165 (378)
Q Consensus 94 ----~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp-~g~~l 165 (378)
+||+|+.||+++|||+++ ++++.+|. .|..+|++|.|+| +...|
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk----------------------------~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFK----------------------------YHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCCCcceeEE----------------------------eccCCeeEEEeccccCceE
Confidence 899999999999999986 44566654 6888999999999 45678
Q ss_pred EEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEecCCC
Q 046394 166 ATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGHSMG 244 (378)
Q Consensus 166 ~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~g 244 (378)
+++|.|.+|.|||+.--.-..... .....+ +-+ -..++++.+.+ ...|..|.|++.-. +|++.+.+|
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~------~~a~~~---L~d-lPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEID------QEAAEG---LQD-LPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhc------cccccc---hhc-CCceeEEEecc--hhHhhhheeccCCCCeEEEecccc
Confidence 899999999999986422110000 000000 001 13455666655 45689999999864 677777788
Q ss_pred eEEEEE
Q 046394 245 VSGILI 250 (378)
Q Consensus 245 ~~~~~~ 250 (378)
+ ++|.
T Consensus 432 f-nVfk 436 (440)
T KOG0302|consen 432 F-NVFK 436 (440)
T ss_pred e-eEEE
Confidence 6 4444
No 131
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.6e-19 Score=157.26 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=143.1
Q ss_pred eEEEeccceeeeeecccceeeEE-eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-
Q 046394 18 TWRIKQEAIAREVDILSSRNQYD-IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF- 93 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~-l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~- 93 (378)
...+..++.|..+|+...+.... +.+|...|..+.|++|+.++|+|+.|+.+.|||. ...++..+..|.+. .+++|
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 34455678888899988877666 8899999999999999999999999999999994 66778889999886 99999
Q ss_pred -----EEEEEe--CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecC
Q 046394 94 -----LLASIN--KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQ 150 (378)
Q Consensus 94 -----~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~ 150 (378)
+||+|+ .|+.|++||..++..+..+. ....|..|.|++..+.|+++..... +.+|.
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence 888876 49999999999999988875 4588999999999988877765443 78999
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
..|..++++|||..+++|+.|.++++|++-..
T Consensus 432 ~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999998653
No 132
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4.4e-19 Score=158.05 Aligned_cols=196 Identities=14% Similarity=0.187 Sum_probs=165.5
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEeCC---C----CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC--c
Q 046394 50 TLDFT-SSGRYMAAAGCKGYPYFYNRD---G----TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG--E 113 (378)
Q Consensus 50 ~~~~s-p~g~~l~~~~~dg~i~iwd~~---~----~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~--~ 113 (378)
.+..+ |+++||++||.||.|++|+.. + ..+..+..|.+. +++.. .|+++|.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 467889999999999999942 2 135667788775 65555 8999999999999999877 5
Q ss_pred EEEEEecCCCCeeEEEE-cCCCCEEEEEcCCCe------------------------ee-ecCCCEEEEEEecCCCEEEE
Q 046394 114 IVGNFWTGLGRTDVIRV-NPFNGVVSLGHSGGT------------------------ML-CHQGPVSALAFHPNGHLMAT 167 (378)
Q Consensus 114 ~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~------------------------~~-~h~~~v~~~~~sp~g~~l~t 167 (378)
+..++..|.+.|.|+++ .++..++|+|+-|+. +. ++..+|.+++.++.|..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 77788899999999999 788889999999887 22 78889999999999999999
Q ss_pred EECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCC----------ccccCCCCCceEEEeeccCCcceeeeEEcCCC
Q 046394 168 SGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDS----------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE 234 (378)
Q Consensus 168 ~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 234 (378)
|+..+.|++||.++++.+..+ | ..|..+..++||. +.+|+.....++.++.. |...|+++.-+|+=
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HKEGVWALQSSPSF 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-ccCceEEEeeCCCc
Confidence 999999999999999888877 3 6677777777664 58999999999999888 88889999999999
Q ss_pred CeEEEecCCCeE
Q 046394 235 DVLGIGHSMGVS 246 (378)
Q Consensus 235 ~~l~~~~~~g~~ 246 (378)
..+.+|+.+|.+
T Consensus 268 ~~vYsG~rd~~i 279 (735)
T KOG0308|consen 268 THVYSGGRDGNI 279 (735)
T ss_pred ceEEecCCCCcE
Confidence 999999999954
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.6e-18 Score=151.91 Aligned_cols=212 Identities=14% Similarity=0.156 Sum_probs=161.5
Q ss_pred eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE-------EEEEEeCCCeEEEE
Q 046394 36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF-------LLASINKLGQLRYQ 107 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~-------~l~s~~~d~~i~iw 107 (378)
.+...+.+|.+.|.||...|.|.+|++|+.||+|+||. .+|.++.++.....+.+++| +||++-... +.|.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 34567889999999999999999999999999999999 78999988877777799999 444433322 3333
Q ss_pred EcCCC-------------------------------------cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394 108 NVTMG-------------------------------------EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----- 145 (378)
Q Consensus 108 d~~~~-------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----- 145 (378)
+..-| .-+.....|...|..+.|+..|.||++...++.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 012233346678999999999999999888665
Q ss_pred ------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCC-
Q 046394 146 ------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSH- 209 (378)
Q Consensus 146 ------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~- 209 (378)
+....+.|.++.|+|.-.+|+.++. ..|+|||+....++..+ ...+.+++.+|.|...+....
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 3344678999999998888888874 56999999988887777 357899999998875332221
Q ss_pred ----------CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 210 ----------NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 210 ----------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
...++..+.. |...|++|+|++.-.++++|++||.+.++.
T Consensus 629 ~k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CeeEEEEcccCcchhHHhhh-hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 2246666666 888999999999999999999999776553
No 134
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=3e-18 Score=139.68 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=154.7
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKL 91 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l 91 (378)
..+.+....|+.+++||+.+++ +..+..|..+|.++.|-+... +|+|||.|.+|+.|| ....++.++.-...+.++
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~ 162 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAA 162 (347)
T ss_pred CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeeh
Confidence 3556667778999999999995 578899999999999987665 899999999999999 667788888877777666
Q ss_pred EE---EEEEEeCCCeEEEEEcCCCcEEEE-E-ecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecC
Q 046394 92 QF---LLASINKLGQLRYQNVTMGEIVGN-F-WTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQ 150 (378)
Q Consensus 92 ~~---~l~s~~~d~~i~iwd~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~ 150 (378)
.. +++.+..+..|.+|+++++..... . ....-.+.|++..++....+.|+-.|. +..|.
T Consensus 163 Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 163 DVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred hccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence 66 788888899999999977543221 1 112356889999999988888888877 55665
Q ss_pred ---------CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCcccc
Q 046394 151 ---------GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 151 ---------~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~ 206 (378)
..|++|+|+|.-..|+|+|.||++.+||-.....+.+. ..+|++.+|+.+|.+.++
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence 25788999998889999999999999998877767665 589999999999987544
No 135
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.2e-17 Score=136.62 Aligned_cols=104 Identities=10% Similarity=0.050 Sum_probs=83.5
Q ss_pred ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CC----CeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEE
Q 046394 42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DG----TELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQN 108 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~----~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd 108 (378)
.+|..-|.++.|.+-|+.+|+|+.|++|.|||. +. .+....+.|.+. ..+.| .+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 467788999999999999999999999999993 22 234557888876 88888 899999999999997
Q ss_pred cCC------C---cEEEEEecCCCCeeEEEEcCC--CCEEEEEcCCCe
Q 046394 109 VTM------G---EIVGNFWTGLGRTDVIRVNPF--NGVVSLGHSGGT 145 (378)
Q Consensus 109 ~~~------~---~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~ 145 (378)
-.. + ....++......|+.+.|.|. |-.+|+++.||.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~ 137 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI 137 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence 521 1 234456667788999999985 568889999998
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=4.7e-18 Score=155.59 Aligned_cols=187 Identities=14% Similarity=0.210 Sum_probs=144.5
Q ss_pred eeeEEEec-cceeeeeeccccee-eEEeec-----CCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEee---cc
Q 046394 16 EKTWRIKQ-EAIAREVDILSSRN-QYDIML-----PELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCS---KE 84 (378)
Q Consensus 16 ~~~~~~~~-~~~i~~~d~~~~~~-~~~l~~-----~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~---~~ 84 (378)
+..+.... +...+.|+...... .+.|.. -...+++++.++.|++.+.|...|.|-+|++ +|-....+ ..
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 34444433 46677888876655 344433 2357889999999999999999999999995 45445556 47
Q ss_pred CCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394 85 HGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------- 145 (378)
Q Consensus 85 ~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------- 145 (378)
|.+. ++++. .+++++.+|.+.+||......+..+.. ...+.++.++.....++++.++-.
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence 7765 77777 899999999999999988887777653 467888899998888888887766
Q ss_pred -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394 146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG 203 (378)
Q Consensus 146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~ 203 (378)
+.+|.+.|++++|||||++|++++.|++|++||+.++.++-.+ ..++.++.|||+|.+
T Consensus 571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence 7899999999999999999999999999999999998877654 344444444444443
No 137
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=151.33 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=170.6
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCce-EEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEeeccCC
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPY-TLDFTS-------SGRYMAAAGCKGYPYFYNRDGTELHCSKEHG 86 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~-~~~~sp-------~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 86 (378)
-+..+...+|..+-+|.-.+......+......+. .+-.-| ....++.++.||.+.|.+..++....+.+|.
T Consensus 25 ~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~rVE~sv~AH~ 104 (737)
T KOG1524|consen 25 NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSARVERSISAHA 104 (737)
T ss_pred cceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccchhhhhhhhhh
Confidence 44556666666666655544444444443333332 222111 1246888999999999999998889999999
Q ss_pred Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------ee
Q 046394 87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------ML 147 (378)
Q Consensus 87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~ 147 (378)
+. .+-.| -|+++|.||.|++|.- +|-...++.-...+|.|++|.|+++-++.+..+.. ..
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~Wk 183 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWR 183 (737)
T ss_pred hhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEe
Confidence 87 88888 8999999999999984 56555555555678999999999976665555554 67
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeeccCCcc
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQ 224 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (378)
.|.+-|.++.|+|..+.+++||.|-..+|||-. |..+.+- ..+|++++|.|+..+.+|...+.. +..+..+.
T Consensus 184 AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R----~~~p~~GS 258 (737)
T KOG1524|consen 184 AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR----FSSPRVGS 258 (737)
T ss_pred ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeee----ecCCCccc
Confidence 899999999999999999999999999999975 5555444 478999999999778888755443 22225667
Q ss_pred eeeeEEcCCCCeEEEecCCCeE
Q 046394 225 IGKVSFRPYEDVLGIGHSMGVS 246 (378)
Q Consensus 225 v~~~~~sp~g~~l~~~~~~g~~ 246 (378)
|..++|||||..+++|...|.+
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred eEEEEEcCCCceeeccccCceE
Confidence 9999999999999999999954
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.6e-18 Score=145.40 Aligned_cols=197 Identities=17% Similarity=0.217 Sum_probs=152.4
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
++|+++.|+|....|++|+.||.++||.++|+. ++.+.-..-+ .+..| .+++++.-..++.||+.+.+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 789999999999999999999999999987754 3444433334 66667 7888999999999999987754
Q ss_pred EEEe--cC-CCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394 116 GNFW--TG-LGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 116 ~~~~--~~-~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~ 179 (378)
..-. ++ ...+.....+|++++|+..+..|. ...-.+.|..++|+.+|+.|++++.+|.|.+||+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence 3222 22 235677889999999999999998 1234578899999999999999999999999999
Q ss_pred CCceeeeee--cCC--ceEEEEecCCCccccC----------------CCCCceEEEeeccCCcceeeeEEcCCCCeEEE
Q 046394 180 RKYEVLQTL--PGH--AKTLDFSRKDSGDFSG----------------SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGI 239 (378)
Q Consensus 180 ~~~~~~~~~--~~~--i~~~~~sp~g~~~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 239 (378)
+...+++.+ .+. -++++.|++|.+...+ .....|+..+.. -...|+++.|+||+++||.
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Ltt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LTTAITSLQFNHDAQILAI 452 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-hheeeeeeeeCcchhhhhh
Confidence 999999999 343 4778888888863332 223344444433 4567999999999999988
Q ss_pred ecCC
Q 046394 240 GHSM 243 (378)
Q Consensus 240 ~~~~ 243 (378)
++..
T Consensus 453 aS~~ 456 (514)
T KOG2055|consen 453 ASRV 456 (514)
T ss_pred hhhc
Confidence 7753
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.5e-18 Score=147.27 Aligned_cols=228 Identities=11% Similarity=0.118 Sum_probs=164.5
Q ss_pred EEEeccceeeeeecccceeeEEeecCC--CCceEEEEcCCCCEEEEE--eCCCcEEEEeCCCC---eEE--eeccCCC-e
Q 046394 19 WRIKQEAIAREVDILSSRNQYDIMLPE--LGPYTLDFTSSGRYMAAA--GCKGYPYFYNRDGT---ELH--CSKEHGE-V 88 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~--~~v~~~~~sp~g~~l~~~--~~dg~i~iwd~~~~---~~~--~~~~~~~-~ 88 (378)
..++....+++||+......-.+-.|+ .++.+++|+.... |+++ +.|..|++|...|. ... ...+... .
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C 84 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC 84 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence 344556677888887665444443332 3588999987654 4444 45778999986654 111 1222211 1
Q ss_pred -eEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeec-C
Q 046394 89 -LKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCH-Q 150 (378)
Q Consensus 89 -~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h-~ 150 (378)
.+..+ ++++||..+.|+|||++..-+.+.+..|...|+++.++....+||+++..|. +... .
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg 164 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG 164 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence 33344 9999999999999999977778888899999999999999999999998887 2222 2
Q ss_pred CCEEEEEEecCCCE-EEEEECCCeEEEEEcCCceeeeee---c-CCceEEEEecCCCc-----------cccCCCCCceE
Q 046394 151 GPVSALAFHPNGHL-MATSGKDCKIKIWDLRKYEVLQTL---P-GHAKTLDFSRKDSG-----------DFSGSHNYNRY 214 (378)
Q Consensus 151 ~~v~~~~~sp~g~~-l~t~~~d~~i~iwd~~~~~~~~~~---~-~~i~~~~~sp~g~~-----------~~~~~~~~~~~ 214 (378)
..|.-+.|+|..++ |.+++.+|.|.+||+....+++.+ | .+...|+|+|.... .+++.......
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 34568999996655 678999999999999988888777 4 78899999997664 44444433333
Q ss_pred EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 215 MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
..+. ...|...|+|+++|.+|++|+..|.+..+
T Consensus 245 ~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~Y 277 (673)
T KOG4378|consen 245 DRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAY 277 (673)
T ss_pred ceee--ecCCcceeeecCCceEEEeecCCceEEEE
Confidence 3332 24578999999999999999999966544
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.3e-19 Score=160.01 Aligned_cols=190 Identities=15% Similarity=0.221 Sum_probs=150.0
Q ss_pred Eeccceeeeeeccc---ceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-
Q 046394 21 IKQEAIAREVDILS---SRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF- 93 (378)
Q Consensus 21 ~~~~~~i~~~d~~~---~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~- 93 (378)
-...+.|.+||+.. ...+..+..|...+.+++|++.. .+|++||.||.|++||+ ......++.+..+. .++.|
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 34568899999987 55566788999999999999855 68899999999999994 44445566666654 88888
Q ss_pred -----EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCC
Q 046394 94 -----LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGP 152 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~ 152 (378)
.|+++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+. ...-..+
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiap 265 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAP 265 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecce
Confidence 9999999999999999864 567788899999999999999999999999998 1122467
Q ss_pred EEEEEEecCCCE-EEEEE--CCCeEEEEEcCC-ceeeeee--c-CCceEEEEecCCCccccCCCC
Q 046394 153 VSALAFHPNGHL-MATSG--KDCKIKIWDLRK-YEVLQTL--P-GHAKTLDFSRKDSGDFSGSHN 210 (378)
Q Consensus 153 v~~~~~sp~g~~-l~t~~--~d~~i~iwd~~~-~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~ 210 (378)
|..+.|-|...+ |++++ .|-.|+|||++. +-+..++ | ..++.++|.......+|+...
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 899999996654 77766 577999999976 4556666 4 567778886644455555433
No 141
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.8e-18 Score=140.06 Aligned_cols=174 Identities=15% Similarity=0.200 Sum_probs=146.3
Q ss_pred eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------
Q 046394 78 ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------ 145 (378)
Q Consensus 78 ~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------ 145 (378)
.++.+.+|.+. ..++. ++.+++.|.+.+||.+++|.|+.++.+|.+.|+++.|++.+.++++++.|+.
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34557788754 66666 8999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394 146 ------------------------------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIW 177 (378)
Q Consensus 146 ------------------------------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw 177 (378)
+.+|.+.|.+..|-..|+.++|++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 78899999999999999999999999999999
Q ss_pred EcCCceeeeee--c-CCceE----------EEEecCCCccccCCCC-CceEEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394 178 DLRKYEVLQTL--P-GHAKT----------LDFSRKDSGDFSGSHN-YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM 243 (378)
Q Consensus 178 d~~~~~~~~~~--~-~~i~~----------~~~sp~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 243 (378)
|+.++.+++.+ | ...+. +.-|.|..+.+|+.+. ...+..+.+ |...|+++.|..+.+
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~-------- 370 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR-------- 370 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-cccceeEEEEecCCc--------
Confidence 99999999888 2 22222 2334566678898753 345677888 999999999998853
Q ss_pred CeEEEEEcCCCCcccccccCCC
Q 046394 244 GVSGILIPGSGEPNFDSWVANP 265 (378)
Q Consensus 244 g~~~~~~~~s~d~~i~~w~~~~ 265 (378)
+++||.|.++++|+...
T Consensus 371 -----vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 371 -----VVSGSDDRTVKVWDLRN 387 (481)
T ss_pred -----eeecCCCceEEEeeecc
Confidence 56889999999998643
No 142
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.2e-17 Score=140.91 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=135.7
Q ss_pred EeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC-C-------CCeEEeeccCCCe-eEEEE------EEEEEeCCCe
Q 046394 40 DIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR-D-------GTELHCSKEHGEV-LKLQF------LLASINKLGQ 103 (378)
Q Consensus 40 ~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~-~-------~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~ 103 (378)
.+.+|.+.|..++|+| +...||+||.|.+|.||.+ . ..++..|.+|..- ..+.| .|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 4468999999999999994 2 2456778899875 77888 8999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce
Q 046394 104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE 183 (378)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~ 183 (378)
|.+||+.+|..+.++ .|.+.|.++.|+.+|.+|+|++.|..|+|||.++++
T Consensus 156 v~iWnv~tgeali~l-----------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL-----------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred EEEEeccCCceeeec-----------------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence 999999999987765 477889999999999999999999999999999999
Q ss_pred eeeee--c--CCceEEEEecCCCc-------------cccCCCCCc-eEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394 184 VLQTL--P--GHAKTLDFSRKDSG-------------DFSGSHNYN-RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV 245 (378)
Q Consensus 184 ~~~~~--~--~~i~~~~~sp~g~~-------------~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~ 245 (378)
.+..- | .....+.|-.+|.+ .+|+..... ++.......++.|.---|.||..
T Consensus 207 ~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~---------- 276 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS---------- 276 (472)
T ss_pred EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC----------
Confidence 98776 3 45566777666653 445443221 22222221234444444555554
Q ss_pred EEEEEcCCCCcccccccC
Q 046394 246 SGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 246 ~~~~~~~s~d~~i~~w~~ 263 (378)
.+++.|-+|++||.|++
T Consensus 277 -ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 277 -IVYLCGKGDSSIRYFEI 293 (472)
T ss_pred -EEEEEecCCcceEEEEe
Confidence 34555666666666654
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.4e-17 Score=139.99 Aligned_cols=157 Identities=19% Similarity=0.268 Sum_probs=124.6
Q ss_pred CceEEEEcC-------CCCEEEEEeCCCcEEEEeCCC----CeEEe------------------eccCCCe-eEEEE---
Q 046394 47 GPYTLDFTS-------SGRYMAAAGCKGYPYFYNRDG----TELHC------------------SKEHGEV-LKLQF--- 93 (378)
Q Consensus 47 ~v~~~~~sp-------~g~~l~~~~~dg~i~iwd~~~----~~~~~------------------~~~~~~~-~~l~~--- 93 (378)
.+.|++|.. -|+|+|.|+.+..|.|||++= .+... -.+|+.+ .++.|
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 456777743 257999999999999999421 11111 1246654 56666
Q ss_pred ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------eeecCCCEEE
Q 046394 94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------MLCHQGPVSA 155 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~~~h~~~v~~ 155 (378)
.||+||.|.+|.+||+.+|++..++..|...|.++.|+|.. .+|++|+.|+. .....+.|..
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 99999999999999999999999999999999999999976 68999999988 1123467889
Q ss_pred EEEecC-CCEEEEEECCCeEEEEEcCC-ceeeeee--c-CCceEEEEecCCCc
Q 046394 156 LAFHPN-GHLMATSGKDCKIKIWDLRK-YEVLQTL--P-GHAKTLDFSRKDSG 203 (378)
Q Consensus 156 ~~~sp~-g~~l~t~~~d~~i~iwd~~~-~~~~~~~--~-~~i~~~~~sp~g~~ 203 (378)
++|+|. ...+++++.||+|+-+|+|+ ++++.++ | ++|+++++++.-..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc
Confidence 999994 45678888999999999998 5888888 4 78999999886554
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8e-17 Score=149.15 Aligned_cols=225 Identities=12% Similarity=0.081 Sum_probs=172.5
Q ss_pred ceeeEEEeccceeeeeecccc-eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEE
Q 046394 15 VEKTWRIKQEAIAREVDILSS-RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKL 91 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~-~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l 91 (378)
.+..+....++.|++|+...- +....+..+...|.+++.. +.+|++|+.+++|.+|.. ++..-..+.-..-+ .++
T Consensus 25 gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~ 102 (933)
T KOG1274|consen 25 GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDL 102 (933)
T ss_pred CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEE
Confidence 445556666788888887665 5555555566677777654 559999999999999994 33332233333333 777
Q ss_pred EE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------------
Q 046394 92 QF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------- 145 (378)
Q Consensus 92 ~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------- 145 (378)
+| ++|.||.|-.|++.++.+......+.+|.++|.++.|+|.+.+||+++-||.
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD 182 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence 77 8999999999999999999999999999999999999999999999999998
Q ss_pred eeec-CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc----------cccCCC
Q 046394 146 MLCH-QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG----------DFSGSH 209 (378)
Q Consensus 146 ~~~h-~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~----------~~~~~~ 209 (378)
...- ...+..++|+|+|..|+..+.|++|.+|+...+.....+ +..++.++|||+|.| .+|+..
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 1111 345677899999888888999999999999999998888 345899999999997 455554
Q ss_pred CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394 210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVS 246 (378)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~ 246 (378)
+... +. ....|++++|.|++.-+......|..
T Consensus 263 t~~~---~~--~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 263 THER---HE--FKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred cchh---cc--ccceeEEEecCCCCCeeEEEeecccc
Confidence 4111 11 35679999999999877665555543
No 145
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=6.6e-17 Score=148.51 Aligned_cols=224 Identities=16% Similarity=0.188 Sum_probs=163.4
Q ss_pred ceeeeeecccce-eeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe---EE----eeccCCCe-eEEEE-
Q 046394 25 AIAREVDILSSR-NQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRDGTE---LH----CSKEHGEV-LKLQF- 93 (378)
Q Consensus 25 ~~i~~~d~~~~~-~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~---~~----~~~~~~~~-~~l~~- 93 (378)
..+.+|++.... ....+.. ...|.|++|+|. .+++|.|+.+|+|.+||..+.. .. ....|..+ +.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 378899998873 3344444 488999999995 4678888889999999954322 11 12345555 78888
Q ss_pred ------EEEEEeCCCeEEEEEcCCCcE-EE-----EEe------cCCCCeeEEEEcCCC-CEEEEEcCCCe---------
Q 046394 94 ------LLASINKLGQLRYQNVTMGEI-VG-----NFW------TGLGRTDVIRVNPFN-GVVSLGHSGGT--------- 145 (378)
Q Consensus 94 ------~l~s~~~d~~i~iwd~~~~~~-~~-----~~~------~~~~~v~~~~~s~~~-~~l~~~~~d~~--------- 145 (378)
-|++++.||.|..|+++.-.. +. ... .....++++.|.+.. ..|++|+..|.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 499999999999998865322 11 111 123467889999865 67888888887
Q ss_pred -------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC-Cceeeeee---cCCceEEEEec---------
Q 046394 146 -------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-KYEVLQTL---PGHAKTLDFSR--------- 199 (378)
Q Consensus 146 -------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~-~~~~~~~~---~~~i~~~~~sp--------- 199 (378)
+..|.++|+++.++|=+..+...+.|.+|+||... ...++..+ ...+++++|||
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 44578899999999965554444449999999987 66666666 35689999999
Q ss_pred --CCCccccCCC--CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 200 --KDSGDFSGSH--NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 200 --~g~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
+|...+|+.. ...++..... +....+.+.|++.|+.|++|+..|.+.++.
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred cCCCceehhhhhccccCCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 5677899863 4456666655 567788899999999999999999666554
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=2.7e-17 Score=141.14 Aligned_cols=227 Identities=15% Similarity=0.130 Sum_probs=163.0
Q ss_pred cceeeeeecccc----eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEeeccC---CCe-eEEEE-
Q 046394 24 EAIAREVDILSS----RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRDGTELHCSKEH---GEV-LKLQF- 93 (378)
Q Consensus 24 ~~~i~~~d~~~~----~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~-~~l~~- 93 (378)
.|.|-+||+.+. ..+.-+..|...|.+|.|+|.. ..+++.|.||+|++-|+.+.....+... ... .++.|
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS 288 (498)
T ss_pred CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc
Confidence 577888888533 3456678899999999999955 6899999999999999776544333222 122 55666
Q ss_pred ----EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe------------------eeec
Q 046394 94 ----LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT------------------MLCH 149 (378)
Q Consensus 94 ----~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------------------~~~h 149 (378)
.++.+..=|...+||.+++.. ...+..|...|..++++|.. .+|++++.|++ ...|
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H 368 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH 368 (498)
T ss_pred CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc
Confidence 566666667899999998654 66666788899999999987 57899999988 4568
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcC----Cceeeeee-c-------CCceEEEEecCCCc----------cccC
Q 046394 150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLR----KYEVLQTL-P-------GHAKTLDFSRKDSG----------DFSG 207 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~----~~~~~~~~-~-------~~i~~~~~sp~g~~----------~~~~ 207 (378)
...|.+..|||.|-.|+|.+.|..|+|||.. ...++.++ | -..-...|.|+..+ ++++
T Consensus 369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 8899999999977779999999999999983 34444555 2 12344678887653 6677
Q ss_pred CCCCceEEEeeccCCcceee-eEEcCCCCeEEEec-CCCeEEEEE
Q 046394 208 SHNYNRYMGYSMVKGYQIGK-VSFRPYEDVLGIGH-SMGVSGILI 250 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~~~~-~~g~~~~~~ 250 (378)
...++.+..+..+....|.+ ..|+|-+..+++|+ ..|.+.+|.
T Consensus 449 ~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 449 GNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred CCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 76666565543323334444 47999998555554 456555443
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=4.1e-17 Score=141.43 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=136.5
Q ss_pred EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCC-e-eEEEE--
Q 046394 19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGE-V-LKLQF-- 93 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~-~-~~l~~-- 93 (378)
+.+.+.+.|++||+........+..|...|+++.+.....|||+++..|.|.|.... +.....|....+ . .-+.|
T Consensus 95 ~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~ 174 (673)
T KOG4378|consen 95 ISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP 174 (673)
T ss_pred eccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence 344567899999999877888899999999999999999999999999999999954 444444544433 2 46666
Q ss_pred ----EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCCC-EEEEEcCCCe-------------eeecCCCEE
Q 046394 94 ----LLASINKLGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFNG-VVSLGHSGGT-------------MLCHQGPVS 154 (378)
Q Consensus 94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~d~~-------------~~~h~~~v~ 154 (378)
+|.+++.+|.|.+||+....++..+. .|..+...|+|+|.+. +|++.+.|.. ......+..
T Consensus 175 skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pls 254 (673)
T KOG4378|consen 175 SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLS 254 (673)
T ss_pred ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcc
Confidence 89999999999999997766665543 4777788888888764 5566666655 223345677
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee---cCCceEEEEecCC
Q 046394 155 ALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL---PGHAKTLDFSRKD 201 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~sp~g 201 (378)
+++|+++|.+|+.|+..|.|..||++.. .++..+ ...|++++|-|..
T Consensus 255 tvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 255 TVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7888888888888888888888888763 334444 3557777776543
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.75 E-value=3e-16 Score=141.19 Aligned_cols=238 Identities=10% Similarity=0.044 Sum_probs=173.7
Q ss_pred CceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC---EEEEEeCCCcEEEEeCCCC---eEEeeccCCC
Q 046394 14 GVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR---YMAAAGCKGYPYFYNRDGT---ELHCSKEHGE 87 (378)
Q Consensus 14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~---~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 87 (378)
+....+.+.....|.+||..+......+.+|...|+|+.|-|+.. ++++|+.||.|.+|.+... .+..+.+|..
T Consensus 23 ~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~ 102 (764)
T KOG1063|consen 23 GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK 102 (764)
T ss_pred cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce
Confidence 334556677778899999998888899999999999999999887 8999999999999996532 2344555443
Q ss_pred eeEEEE----EEEE-EeCCCeEEEEEcCCCc-------------------------------------------------
Q 046394 88 VLKLQF----LLAS-INKLGQLRYQNVTMGE------------------------------------------------- 113 (378)
Q Consensus 88 ~~~l~~----~l~s-~~~d~~i~iwd~~~~~------------------------------------------------- 113 (378)
.++++ .+.+ ...|+++++||.+..+
T Consensus 103 -~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 103 -ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred -eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 33333 2222 2577888888873222
Q ss_pred -EEEEEecCCCCeeEEEEcCCCC---EEEEEcCCCe--------------------------------------------
Q 046394 114 -IVGNFWTGLGRTDVIRVNPFNG---VVSLGHSGGT-------------------------------------------- 145 (378)
Q Consensus 114 -~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~-------------------------------------------- 145 (378)
.+..+.+|.+.|.+++|...+. +|++++.|..
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 2333556777788888887554 6777777776
Q ss_pred -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee------c--CCceEEEEecCCCc----------c
Q 046394 146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL------P--GHAKTLDFSRKDSG----------D 204 (378)
Q Consensus 146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~------~--~~i~~~~~sp~g~~----------~ 204 (378)
+.||.+.|.++.|+|.+..|+++|.|.++.+|...+..- +..+ + .......|+|++.. .
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 559999999999999999999999999999997665322 2222 1 23567778887753 5
Q ss_pred ccCCCC---CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394 205 FSGSHN---YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS 253 (378)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s 253 (378)
+|...+ ..+.....+ |...|.+++|+|.|.+|.+.+.|-+.++|...+
T Consensus 342 lWkt~d~~~w~~~~~iSG-H~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISG-HVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred EEeccCccceeecccccc-ccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 555222 123334556 888999999999999999999999888887763
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-16 Score=130.48 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=145.8
Q ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394 48 PYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWT 120 (378)
Q Consensus 48 v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~ 120 (378)
..|+.|++.|.+||+|+.||.|.|||+.. ..-..+.+|..+ ++++| .|+|++.|..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 77999999999999999999999999544 455678899887 99999 99999999999999999999988886
Q ss_pred CCCCeeEEEEcCCCCEEEEEcC--CCe------------ee----e-cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 121 GLGRTDVIRVNPFNGVVSLGHS--GGT------------ML----C-HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 121 ~~~~v~~~~~s~~~~~l~~~~~--d~~------------~~----~-h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
...+|+.+.|+|...-.++++. ... +. + .+....+..|.+.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 4688999999996543222221 111 00 0 011112335888999999999999999999999
Q ss_pred ceeeeee---c-CCceEEEEecCCCccccCCCCCceEEEeecc---------------------CCcceeeeEEcCCCCe
Q 046394 182 YEVLQTL---P-GHAKTLDFSRKDSGDFSGSHNYNRYMGYSMV---------------------KGYQIGKVSFRPYEDV 236 (378)
Q Consensus 182 ~~~~~~~---~-~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~---------------------~~~~v~~~~~sp~g~~ 236 (378)
.+++..+ . ..|..+.++..|.+.+.+..+. .+.++... ...+=.+++||.+|.|
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 9998888 3 6789999999999766654332 22222110 0112257889999999
Q ss_pred EEEecCCC
Q 046394 237 LGIGHSMG 244 (378)
Q Consensus 237 l~~~~~~g 244 (378)
+++|+...
T Consensus 264 v~a~s~~a 271 (405)
T KOG1273|consen 264 VCAGSARA 271 (405)
T ss_pred EEeccccc
Confidence 98887543
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=3.9e-17 Score=140.18 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=147.5
Q ss_pred eecccceeeEEeecCCCCceEEEEcCCC--CEEEEEeCCCcEEEEeCCC-----CeEEeeccCCCe-eEEEE------EE
Q 046394 30 VDILSSRNQYDIMLPELGPYTLDFTSSG--RYMAAAGCKGYPYFYNRDG-----TELHCSKEHGEV-LKLQF------LL 95 (378)
Q Consensus 30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g--~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~~l~~------~l 95 (378)
+|+.+.........+...|++++|+|.. +.+|+|...|+|-+||+.+ ..+..+..|.++ +++.| .+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4555555666677888999999999966 4788999999999999742 234556778776 99999 89
Q ss_pred EEEeCCCeEEEEEcCCCcE--EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEE
Q 046394 96 ASINKLGQLRYQNVTMGEI--VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAF 158 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~ 158 (378)
++.+.||+|++-|++.+.. +.........+..+.|+.+...++.+..-|. +.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999987653 3333334556778889988877777766663 5567789999999
Q ss_pred ec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394 159 HP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL 237 (378)
Q Consensus 159 sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 237 (378)
+| ...+|+|+|.|++++|||++.... ...++.... +|...|.++.|||+|-.|
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~-------------------------K~sp~lst~-~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRG-------------------------KASPFLSTL-PHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcC-------------------------CCCcceecc-cccceeeeeEEcCCCCce
Confidence 99 556799999999999999987331 111222222 378889999999998767
Q ss_pred EEecCCCeEEEEEc
Q 046394 238 GIGHSMGVSGILIP 251 (378)
Q Consensus 238 ~~~~~~g~~~~~~~ 251 (378)
++.+.|..+++|.+
T Consensus 385 ~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDS 398 (498)
T ss_pred EeeccCCceEEeec
Confidence 77777776666654
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6e-18 Score=160.06 Aligned_cols=198 Identities=19% Similarity=0.194 Sum_probs=151.0
Q ss_pred ccceeeeeecccc------eeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEee---ccCCCeeEE
Q 046394 23 QEAIAREVDILSS------RNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTE-LHCS---KEHGEVLKL 91 (378)
Q Consensus 23 ~~~~i~~~d~~~~------~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~-~~~~---~~~~~~~~l 91 (378)
.||.|.+||...- ..+.+...|.+.|..+.|++... +||+|+.||.|.|||+..-. -..+ .-...+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 3677777777652 33556778999999999999765 99999999999999964321 1122 122345899
Q ss_pred EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCC--CeeEEEEcCCC-CEEEEEcCCCe-----------------
Q 046394 92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLG--RTDVIRVNPFN-GVVSLGHSGGT----------------- 145 (378)
Q Consensus 92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~-~~l~~~~~d~~----------------- 145 (378)
+| +|++++.+|.+.|||++..+++-.+..+.+ .++.+.|+|++ +.++++++|..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 99 899999999999999998888777766543 47789999988 46777776665
Q ss_pred -eeecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCc
Q 046394 146 -MLCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGY 223 (378)
Q Consensus 146 -~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~ 223 (378)
+.+|...|.+|.|++.+ ++|+|++.|+.|.+|+..+++.+..+ .. .++
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~-----------------------------p~-~~n 297 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL-----------------------------PA-QGN 297 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec-----------------------------CC-CCc
Confidence 57899999999999955 88999999999999999887765543 22 345
Q ss_pred ceeeeEEcCCCC-eEEEecCCCeEEEEE
Q 046394 224 QIGKVSFRPYED-VLGIGHSMGVSGILI 250 (378)
Q Consensus 224 ~v~~~~~sp~g~-~l~~~~~~g~~~~~~ 250 (378)
.+..+.|+|... .+++++-+|.+.++-
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeee
Confidence 677888888775 666667777666553
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=6.7e-16 Score=127.24 Aligned_cols=206 Identities=13% Similarity=0.163 Sum_probs=147.7
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeCCC--------C-----eEEeeccCCC--eeEEEE------------EEEEEe
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--------T-----ELHCSKEHGE--VLKLQF------------LLASIN 99 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------~-----~~~~~~~~~~--~~~l~~------------~l~s~~ 99 (378)
-..++.|||||..|++-+.|..+.+|++.. . ....++-..+ +...+| ++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 455889999999999999999999999421 0 1111222222 244555 889999
Q ss_pred CCCeEEEEEcCCCcEEEEEecCC-----CCeeEEEEcCCCCEEEEEcCCCe----------------e-----eecCCCE
Q 046394 100 KLGQLRYQNVTMGEIVGNFWTGL-----GRTDVIRVNPFNGVVSLGHSGGT----------------M-----LCHQGPV 153 (378)
Q Consensus 100 ~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~~----------------~-----~~h~~~v 153 (378)
.+.-|++||.-+|+...++.... ....+++|+|||..|++|...-. . .+..+.|
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999999888776532 24568999999999998876554 1 2336778
Q ss_pred EEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeecc---------
Q 046394 154 SALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMV--------- 220 (378)
Q Consensus 154 ~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~--------- 220 (378)
.+++|+| +...++.++....+-||.-..+.++..+ .+.|+.+.|.++|...+...+....+..|...
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 9999999 5568999999999999998888998888 48899999999998755544443333333220
Q ss_pred --CCc-cee--eeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394 221 --KGY-QIG--KVSFRPYEDVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 221 --~~~-~v~--~~~~sp~g~~l~~~~~~g~~~~~~~~ 252 (378)
|.. .-. -....|+|++||+|+.+|.+++|..-
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 111 112 24556888888888777777666543
No 153
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.73 E-value=1.6e-16 Score=130.12 Aligned_cols=214 Identities=14% Similarity=0.129 Sum_probs=167.7
Q ss_pred eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----EEeeccCCCeeEEEE-----EEEEEeCCCeEEEE
Q 046394 37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE----LHCSKEHGEVLKLQF-----LLASINKLGQLRYQ 107 (378)
Q Consensus 37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iw 107 (378)
.+.+|..|...|+++.|+|....|++|+.|++|+++|..... ...+.....+.++.| +++.|..-.++++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 467788899999999999999999999999999999964322 233444444588888 88888888899999
Q ss_pred EcCCCcEEEEEe---cCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecC-CCEEEEEEecCCCEEEEE
Q 046394 108 NVTMGEIVGNFW---TGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQ-GPVSALAFHPNGHLMATS 168 (378)
Q Consensus 108 d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~-~~v~~~~~sp~g~~l~t~ 168 (378)
|+.+.++..... .|.+.|+++.+++.+++.++++.||. -..|. ..|.+..|..+|+|+++.
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence 999998866543 36789999999999999999999998 22354 468899999999999999
Q ss_pred ECCCeEEEEEcCCceeeeee-cC-------CceEE--------EEecCCC---ccccCCCCCceEEEeeccCCcceeeeE
Q 046394 169 GKDCKIKIWDLRKYEVLQTL-PG-------HAKTL--------DFSRKDS---GDFSGSHNYNRYMGYSMVKGYQIGKVS 229 (378)
Q Consensus 169 ~~d~~i~iwd~~~~~~~~~~-~~-------~i~~~--------~~sp~g~---~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (378)
|.|..+++|.+.+++++..+ .. .-+.. .+.||.. ...|+.++......+...|.+++..+.
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV 403 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE
Confidence 99999999999999999988 21 11233 3344433 356777777666666655999999999
Q ss_pred EcCCCCeEEEecCCCeEEEEE
Q 046394 230 FRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 230 ~sp~g~~l~~~~~~g~~~~~~ 250 (378)
-||.+..+++|++|-..++|.
T Consensus 404 HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred eCCCCCceeeecccceeeeee
Confidence 999997666666665555443
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=142.74 Aligned_cols=232 Identities=11% Similarity=0.111 Sum_probs=172.8
Q ss_pred eecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-
Q 046394 10 LEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV- 88 (378)
Q Consensus 10 l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 88 (378)
+.++|.+- .+-.+..+.+||...|....++++|...|+|++|+.||..+|+|+.|..|.+|+..-+-+..+ .|.++
T Consensus 20 fkPDGsqL--~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY-SH~D~I 96 (1081)
T KOG1538|consen 20 FKPDGTQL--ILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY-SHNDAI 96 (1081)
T ss_pred ECCCCceE--EEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee-ccCCee
Confidence 45555443 334567889999999999999999999999999999999999999999999999543333333 46665
Q ss_pred eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------ee
Q 046394 89 LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------ML 147 (378)
Q Consensus 89 ~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~ 147 (378)
.|+.| .+++|+-+ ..-+|....... ... .....+.+++|+.||++++.|..+|+ -.
T Consensus 97 QCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 97 QCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPG 173 (1081)
T ss_pred eEeecCchHHHhhhcchh-hccccChhhhhH-Hhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCC
Confidence 99999 78887754 356787654332 222 12467889999999999999999998 23
Q ss_pred ecCCCEEEEEEecCC-----CEEEEEECCCeEEEEEcCCceeeee---ecCCceEEEEecCCCccccCCCCCce------
Q 046394 148 CHQGPVSALAFHPNG-----HLMATSGKDCKIKIWDLRKYEVLQT---LPGHAKTLDFSRKDSGDFSGSHNYNR------ 213 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g-----~~l~t~~~d~~i~iwd~~~~~~~~~---~~~~i~~~~~sp~g~~~~~~~~~~~~------ 213 (378)
+.+.+|.+++|+|.. ..++......++..|.+. |+.+.. +.-...|+++.|+|.+.+.+..+...
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence 467899999999942 457777777888888764 454432 25667899999999986665444332
Q ss_pred ---EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 214 ---YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 214 ---~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
+.+... ....|+.|+..|++++++.|..||++.-+
T Consensus 253 GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 253 GVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred CeEEeeccc-cceeEEEEEEccCCceEEEEEccCeeehh
Confidence 222222 45689999999999999999999976533
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.1e-16 Score=128.35 Aligned_cols=233 Identities=12% Similarity=0.046 Sum_probs=164.1
Q ss_pred EEEeccceeeeeecccceeeEEeecCCCCceEEEEcC--CCCEEEEEeCCCcEEEEeC-CCC--eEEeeccCCC-e-eEE
Q 046394 19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTS--SGRYMAAAGCKGYPYFYNR-DGT--ELHCSKEHGE-V-LKL 91 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~-~-~~l 91 (378)
...-..+.+++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||. ... ....+..+.+ + .++
T Consensus 44 av~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~l 123 (376)
T KOG1188|consen 44 AVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICL 123 (376)
T ss_pred EEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEe
Confidence 3345579999999999999999999999999999977 3568999999999999993 222 2334455553 2 555
Q ss_pred EE-----EEEEEe----CCCeEEEEEcCCCcE-EEE-EecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------
Q 046394 92 QF-----LLASIN----KLGQLRYQNVTMGEI-VGN-FWTGLGRTDVIRVNPFN-GVVSLGHSGGT-------------- 145 (378)
Q Consensus 92 ~~-----~l~s~~----~d~~i~iwd~~~~~~-~~~-~~~~~~~v~~~~~s~~~-~~l~~~~~d~~-------------- 145 (378)
+- ++++|. .+-.|.+||++..+. +.. ...|.+.|++++|+|.. +.|++|+.||.
T Consensus 124 d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 124 DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA 203 (376)
T ss_pred eccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence 44 555553 367799999998765 444 34688999999999976 79999999998
Q ss_pred ---eeecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeeec-C-------------------------CceEE
Q 046394 146 ---MLCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTLP-G-------------------------HAKTL 195 (378)
Q Consensus 146 ---~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~~-~-------------------------~i~~~ 195 (378)
...|...|.++.|+.++ +.|.+.+...+..+|++..+.+...+. . ....+
T Consensus 204 L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l 283 (376)
T KOG1188|consen 204 LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCAL 283 (376)
T ss_pred HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEE
Confidence 34566779999999877 347888889999999998877544431 0 00111
Q ss_pred EEecCCC--c----cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 196 DFSRKDS--G----DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 196 ~~sp~g~--~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
+....+. + +.........+..+.+.|..-|.++.|...+.+|.+|+.||.+.+|..
T Consensus 284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 1111111 1 111122233334444446677889999988888888888888887774
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.4e-17 Score=132.26 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=124.8
Q ss_pred EeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcE-----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---
Q 046394 80 HCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEI-----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--- 145 (378)
Q Consensus 80 ~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--- 145 (378)
..+++|.+. ++++| .|+|++.|++|++|+++.... ++. ....+..+.+.|+||-+-+++....|.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 457899876 99999 999999999999999986431 211 122357889999999987776665555
Q ss_pred ------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEe
Q 046394 146 ------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFS 198 (378)
Q Consensus 146 ------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s 198 (378)
-..|.-.|..+-...++.+|++++.|..|.|||++ |+.+.++ .......+.|
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 22356667777777889999999999999999998 9999888 4567788999
Q ss_pred cCCCc----------cccCC--------CCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 199 RKDSG----------DFSGS--------HNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 199 p~g~~----------~~~~~--------~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
|+|++ .+|.. ..-..++.+.+ |.+.|+.++|||+...+++.+.||..++|
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 99997 22321 11123456777 89999999999999666665555544444
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.7e-15 Score=133.29 Aligned_cols=128 Identities=14% Similarity=0.222 Sum_probs=101.3
Q ss_pred eEEEe-ccceeeeeecccceeeEE--eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee----cc-CC--
Q 046394 18 TWRIK-QEAIAREVDILSSRNQYD--IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS----KE-HG-- 86 (378)
Q Consensus 18 ~~~~~-~~~~i~~~d~~~~~~~~~--l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~----~~-~~-- 86 (378)
.+.+. .++.+..++...+...+. |....+.|.+++|+|++..|++|+.||.|++|| ..+..++.. .. ..
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~ 203 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE 203 (691)
T ss_pred eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence 33444 677777777766655444 344457899999999999999999999999999 556555521 11 11
Q ss_pred C-e-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394 87 E-V-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 87 ~-~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 145 (378)
. . .++.| .+++|..-|+|.+||...+..++.+..|...|.+++.++++..+++++.|+.
T Consensus 204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 1 1 55555 8999999999999999999999999999999999999999999999999987
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=4.8e-16 Score=133.07 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=142.5
Q ss_pred ecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC
Q 046394 42 MLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG 112 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~ 112 (378)
.+|+..|.+++|+.+- +.||+||.|.+|.+|| .+|++..++..|.+. .++.| .+++|+.|++|.+.|++..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 3788889999998754 5789999999999999 578888888888775 99999 9999999999999999853
Q ss_pred cEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEEECCCeEE
Q 046394 113 EIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIK 175 (378)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~ 175 (378)
......-...+.|..++|+|... .+++++.||. +..|.++|.++++++ ...+++|++.|+.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 22111112347899999999874 6778888888 788999999999998 445789999999999
Q ss_pred EEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEecCCCeEEEEEcCCC
Q 046394 176 IWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGHSMGVSGILIPGSG 254 (378)
Q Consensus 176 iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~g~~~~~~~~s~ 254 (378)
+|++..-. ...+..+.. .-+...|.++.|+-. +||+|+..+..++|..-..
T Consensus 400 lw~~~~~~---------------------------~~~v~~~~~-~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 400 LWKFDVDS---------------------------PKSVKEHSF-KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred EEeecCCC---------------------------Ccccccccc-cccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 99986422 111222221 223467788888764 6788888888888875444
Q ss_pred Cc
Q 046394 255 EP 256 (378)
Q Consensus 255 d~ 256 (378)
.+
T Consensus 452 ~~ 453 (463)
T KOG0270|consen 452 SP 453 (463)
T ss_pred hh
Confidence 33
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.71 E-value=2.2e-14 Score=126.34 Aligned_cols=184 Identities=13% Similarity=0.129 Sum_probs=131.7
Q ss_pred EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE-eCCCcEEEEeCC-CCeEEeeccCCCeeEEEE-----
Q 046394 21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA-GCKGYPYFYNRD-GTELHCSKEHGEVLKLQF----- 93 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~l~~----- 93 (378)
...++.+.+||+.+++....+..+ ..+..++|+|+++.++++ +.++.|.+||.. +..+..+..+..+.+++|
T Consensus 49 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~ 127 (300)
T TIGR03866 49 ASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK 127 (300)
T ss_pred ECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC
Confidence 345789999999998887777665 446789999999977655 458999999964 445555554444567777
Q ss_pred EEEEEeCCC-eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe--------------eeecC-----C-
Q 046394 94 LLASINKLG-QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT--------------MLCHQ-----G- 151 (378)
Q Consensus 94 ~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--------------~~~h~-----~- 151 (378)
++++++.++ .+.+||..++.....+.. ...+.+++|+|++..|++++ .++. +..+. .
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA 206 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence 666666654 577889988877665543 34567899999999886554 4554 11111 1
Q ss_pred -CEEEEEEecCCCEEEE-EECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc
Q 046394 152 -PVSALAFHPNGHLMAT-SGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 152 -~v~~~~~sp~g~~l~t-~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~ 206 (378)
....++|+|+|+++++ .+.++.|.+||+.+++.+..+ ...+.+++|+|+|.+.+.
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 1246889999998544 456778999999998887665 567899999999986443
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=1.6e-15 Score=135.31 Aligned_cols=242 Identities=9% Similarity=0.031 Sum_probs=160.2
Q ss_pred CeeecCCceeeEEEec-cceeeeeecccceee------EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-E
Q 046394 8 GYLEAEGVEKTWRIKQ-EAIAREVDILSSRNQ------YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-L 79 (378)
Q Consensus 8 ~~l~~~~~~~~~~~~~-~~~i~~~d~~~~~~~------~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~ 79 (378)
.|-.+.+.+..+.+.. ++.|.++|.....-. .....|...|..+.|.|....|++++.|.++++||+.+.. .
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~ 135 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV 135 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee
Confidence 4555556666666654 788999987654332 4456799999999999966789999999999999965433 3
Q ss_pred E--eeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCc--------------------E-------EEEEecCCC
Q 046394 80 H--CSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGE--------------------I-------VGNFWTGLG 123 (378)
Q Consensus 80 ~--~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~--------------------~-------~~~~~~~~~ 123 (378)
. .+.+|.+. .+++| .|++|+.||.|.|||++-.. + +.....+..
T Consensus 136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ 215 (720)
T KOG0321|consen 136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN 215 (720)
T ss_pred cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC
Confidence 3 37889886 88888 99999999999999985321 0 001112233
Q ss_pred CeeE---EEEcCCCCEEEEEcC-CCe----------------------eeec---CCCEEEEEEecCCCEEEEEECCCeE
Q 046394 124 RTDV---IRVNPFNGVVSLGHS-GGT----------------------MLCH---QGPVSALAFHPNGHLMATSGKDCKI 174 (378)
Q Consensus 124 ~v~~---~~~s~~~~~l~~~~~-d~~----------------------~~~h---~~~v~~~~~sp~g~~l~t~~~d~~i 174 (378)
.+.. +.+..|...||+++. |+. +..| ...++++.....|.+|.+.+.|++|
T Consensus 216 ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 216 TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 4444 666778888888877 666 2233 3457788888888888777779999
Q ss_pred EEEEcCCcee--eeee-cCCc----eEEEEecCCCc----------cccCCCCC-ceEEEeeccCCcceeeeEEcCCCC-
Q 046394 175 KIWDLRKYEV--LQTL-PGHA----KTLDFSRKDSG----------DFSGSHNY-NRYMGYSMVKGYQIGKVSFRPYED- 235 (378)
Q Consensus 175 ~iwd~~~~~~--~~~~-~~~i----~~~~~sp~g~~----------~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~g~- 235 (378)
++|++.+... +..+ +..+ ..-..+||+.+ .+|..... .+...+.+ |...|++++|.|...
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATT 374 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC-cceEEEEEeeccccCC
Confidence 9999986432 3333 2111 22345666665 34433222 22334445 888899999998652
Q ss_pred eEEEecCCCeEEEEE
Q 046394 236 VLGIGHSMGVSGILI 250 (378)
Q Consensus 236 ~l~~~~~~g~~~~~~ 250 (378)
-++++++|-.+.+|.
T Consensus 375 ~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWR 389 (720)
T ss_pred CceeeccCcceEEEe
Confidence 334445555444443
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=5.8e-16 Score=138.18 Aligned_cols=214 Identities=13% Similarity=0.122 Sum_probs=144.5
Q ss_pred eccceeeeeecccceeeEE--ee--cCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCC--------CCeEEeeccCCCe
Q 046394 22 KQEAIAREVDILSSRNQYD--IM--LPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRD--------GTELHCSKEHGEV 88 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~--l~--~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~--------~~~~~~~~~~~~~ 88 (378)
...+.|-||++...-.+-. +. .....|+.+.|.| |...||+++.||.|++|.+. ..+...+.+|..-
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 4478899998865433211 11 1235688999999 66789999999999999942 2345678888875
Q ss_pred -eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC
Q 046394 89 -LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN 161 (378)
Q Consensus 89 -~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~ 161 (378)
.++.| .|++++.|.+|.+||+.++.....+. +|.+.|.+++|||+
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~----------------------------gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV----------------------------GHTDQIFGIAWSPD 731 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec----------------------------cCcCceeEEEECCC
Confidence 99999 89999999999999999888766664 78889999999999
Q ss_pred CCEEEEEECCCeEEEEEcCCcee-eeee----cCCceEEEEecCCCccccCCC---CCceEEEeec--cCCcceeeeEEc
Q 046394 162 GHLMATSGKDCKIKIWDLRKYEV-LQTL----PGHAKTLDFSRKDSGDFSGSH---NYNRYMGYSM--VKGYQIGKVSFR 231 (378)
Q Consensus 162 g~~l~t~~~d~~i~iwd~~~~~~-~~~~----~~~i~~~~~sp~g~~~~~~~~---~~~~~~~~~~--~~~~~v~~~~~s 231 (378)
|+.++|.+.||+|++|..+++.. ++.- ......+.|.-||.+.+...- ....+..+.. ....+++.....
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD 811 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD 811 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence 99999999999999999988553 4443 345577889999987443221 1111211111 011223222222
Q ss_pred CCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 232 PYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 232 p~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
-.-..|+--.+.....+|++|.+|..+..|++
T Consensus 812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 11122332222223366778888888777764
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=4e-15 Score=122.98 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=152.4
Q ss_pred CCCCceEEEEcCCC----CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCC
Q 046394 44 PELGPYTLDFTSSG----RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTM 111 (378)
Q Consensus 44 ~~~~v~~~~~sp~g----~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~ 111 (378)
|...-+.++|+-+. .++|+||.-|.|+|.| ..+.....+.+|... +.+.| ++++++.|.+|++||+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 66677888887543 4789999999999999 677788889999986 99998 999999999999999999
Q ss_pred CcEEEEEe---cCCCCeeEEEEcCCCCEEEEEcCCCe------------------------------------------e
Q 046394 112 GEIVGNFW---TGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------------------M 146 (378)
Q Consensus 112 ~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------------------~ 146 (378)
..++..|. +|.+.|.++.|+++|.+|++++.|.. .
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99998876 47789999999999999999999988 1
Q ss_pred eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-cee-------------eeee---cCCceEEEEec----------
Q 046394 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEV-------------LQTL---PGHAKTLDFSR---------- 199 (378)
Q Consensus 147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~-------------~~~~---~~~i~~~~~sp---------- 199 (378)
.-|...|-|+.|- |+++++=|.++.|..|-... .+. +.++ ...++-+.|+-
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 2255555566664 57899999999999997721 111 2222 23455555543
Q ss_pred --CCCccccCCCCCceE----EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 200 --KDSGDFSGSHNYNRY----MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 200 --~g~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.|...+|+.....+. ..+.- .+..|...+||.||.+|+...++|++--|
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 244577776554442 22222 46789999999999988888888865443
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=123.81 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=145.7
Q ss_pred eccceeeeeecccceeeEEeec--CCC---CceEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeE--Ee-e----ccCCC
Q 046394 22 KQEAIAREVDILSSRNQYDIML--PEL---GPYTLDFTSSGRYMAAAGCKGYPYFYNR--DGTEL--HC-S----KEHGE 87 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~--~~~---~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~--~~-~----~~~~~ 87 (378)
+.+.-|++||..+|+...++.+ |.. +..+++|+|||.+|+.| ...+|+++|. .|... .. + .+..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 3467899999999998777665 333 45699999999999877 5679999994 34322 11 1 12245
Q ss_pred e-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394 88 V-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------- 145 (378)
Q Consensus 88 ~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------- 145 (378)
+ .+++| .++.++...++-||.-..+.++..+.+|.+.|+.++|.++|+.|++|.....
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 5 77888 8899999999999998889999999999999999999999999999886443
Q ss_pred -eeecCC---CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccC
Q 046394 146 -MLCHQG---PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVK 221 (378)
Q Consensus 146 -~~~h~~---~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~ 221 (378)
+..|.+ .=.-+...|+|++|++|+.||.|++||+.. .+.....+.. +
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~----------------------------~gn~~sv~~~-~ 339 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD----------------------------LGNEVSVTGN-Y 339 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC----------------------------CCCccccccc-c
Confidence 444443 222345678999999999999999999976 1222333333 6
Q ss_pred CcceeeeEEcCCCCeEEEecCCC
Q 046394 222 GYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 222 ~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
...|+.|+++|-=.++|+++...
T Consensus 340 sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cccccceecCcccceeeeccCce
Confidence 77899999999977777777663
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=6.2e-16 Score=124.01 Aligned_cols=205 Identities=13% Similarity=0.098 Sum_probs=144.6
Q ss_pred CceeeEEEeccceeeeeecccceeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------------
Q 046394 14 GVEKTWRIKQEAIAREVDILSSRNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-------------- 78 (378)
Q Consensus 14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-------------- 78 (378)
..++.+...+.+++.+|++.+....-.+. .|...|+.+.--|+ ..+.+-+.|+.+.+|+..+..
T Consensus 24 a~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgF 102 (323)
T KOG0322|consen 24 ANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGF 102 (323)
T ss_pred cchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccc
Confidence 36778888999999999999999888888 56678889988887 467788899999999853310
Q ss_pred -EEee-------------c--------------------------cCCC-eeEEEE--------EEEEEeCCCeEEEEEc
Q 046394 79 -LHCS-------------K--------------------------EHGE-VLKLQF--------LLASINKLGQLRYQNV 109 (378)
Q Consensus 79 -~~~~-------------~--------------------------~~~~-~~~l~~--------~l~s~~~d~~i~iwd~ 109 (378)
...+ . +..+ +.+..+ +++.|-.+|.+-+||+
T Consensus 103 CrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~ 182 (323)
T KOG0322|consen 103 CRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL 182 (323)
T ss_pred ccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEc
Confidence 0000 0 0001 122222 7778888999999999
Q ss_pred CCCcEEEE----------EecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecC
Q 046394 110 TMGEIVGN----------FWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPN 161 (378)
Q Consensus 110 ~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~ 161 (378)
.++..+.. ...|..+|.++.|.+.-..=++|+.+.. +.--+..|..+.+-||
T Consensus 183 S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD 262 (323)
T KOG0322|consen 183 STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD 262 (323)
T ss_pred cCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC
Confidence 98743333 3346778888888764333233332222 2223456778889999
Q ss_pred CCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEec
Q 046394 162 GHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGH 241 (378)
Q Consensus 162 g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 241 (378)
++.+||+|.|+.||||..++..+ +..+.. |...|++++|+|+..++|+++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~p-----------------------------LAVLky-Hsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNP-----------------------------LAVLKY-HSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCc-----------------------------hhhhhh-hhcceeEEEeCCCCchhhhcc
Confidence 99999999999999999887543 344444 778899999999987777777
Q ss_pred CCCeEEEE
Q 046394 242 SMGVSGIL 249 (378)
Q Consensus 242 ~~g~~~~~ 249 (378)
.|+.+.+|
T Consensus 313 kD~rISLW 320 (323)
T KOG0322|consen 313 KDARISLW 320 (323)
T ss_pred CCceEEee
Confidence 77766665
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=135.32 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=148.5
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
.|+.++|-|||..|+.+.. ..+.+|| .+|..+.++++|.+. .+++| .+++|+.|..|.+|+..-.-. ..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-
Confidence 7899999999998887754 4799999 688999999999987 99999 999999999999998643222 222
Q ss_pred cCCCCeeEEEEcCCCCEEEEEcCCCe---------eee--cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 120 TGLGRTDVIRVNPFNGVVSLGHSGGT---------MLC--HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 120 ~~~~~v~~~~~s~~~~~l~~~~~d~~---------~~~--h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
.|.+.|.|+.|+|-+..+++++-..- ... ....+.+++|..||++|+.|-.+|+|.|-+- +++..-.+
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I 169 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKI 169 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEE
Confidence 47899999999999999988876543 222 2456788999999999999999999998753 34543333
Q ss_pred ------cCCceEEEEecCCCc---c---ccCCCCCceEEEeec-------cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 189 ------PGHAKTLDFSRKDSG---D---FSGSHNYNRYMGYSM-------VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 189 ------~~~i~~~~~sp~g~~---~---~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.++|.+++|+|.... + +.+-.....+..+.+ .-.....++++.|+|.++..|+.++...++
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence 368999999997542 1 111111112222222 012235689999999999999999977654
No 166
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=6.8e-15 Score=121.23 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=148.1
Q ss_pred CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC-C
Q 046394 44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM-G 112 (378)
Q Consensus 44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~-~ 112 (378)
-..+|+|.+|++|+..+|++.....|.||...+ ...+++..|... +.++| .|++|+.|..-++|.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 346899999999999999999999999999543 356889999987 99999 999999999999999843 3
Q ss_pred --cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394 113 --EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATSGKDC 172 (378)
Q Consensus 113 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~ 172 (378)
++...+..++..++++.|+|.++.||+|+.... -..+...|++++|+|++-+|++||.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 345556678899999999999999999998887 223556789999999999999999999
Q ss_pred eEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394 173 KIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~ 252 (378)
..+||..- ++.+.... +=+|-|... .-+.++..+.. .++.|..+.|+|+|..|+-.+.|+.+.+....
T Consensus 169 k~rVfSay----IK~Vdekp---ap~pWgsk~----PFG~lm~E~~~-~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 169 KCRVFSAY----IKGVDEKP---APTPWGSKM----PFGQLMSEASS-SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred ceeEEEEe----eeccccCC---CCCCCccCC----cHHHHHHhhcc-CCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 99998642 11110000 001111110 11223333323 56779999999999999988888877666543
Q ss_pred C
Q 046394 253 S 253 (378)
Q Consensus 253 s 253 (378)
+
T Consensus 237 ~ 237 (361)
T KOG1523|consen 237 G 237 (361)
T ss_pred C
Confidence 3
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.9e-15 Score=133.24 Aligned_cols=197 Identities=15% Similarity=0.095 Sum_probs=137.5
Q ss_pred eeEEEeccceeeeeecc--------cceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-------C----C
Q 046394 17 KTWRIKQEAIAREVDIL--------SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-------G----T 77 (378)
Q Consensus 17 ~~~~~~~~~~i~~~d~~--------~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-------~----~ 77 (378)
-.+..+.++++.+|++. ..+.++++.+|.++|.|+++++++.++++|+-||+|+.|++. . .
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 35566778889999882 225689999999999999999999999999999999999621 1 2
Q ss_pred eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEc-CCCe---
Q 046394 78 ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGH-SGGT--- 145 (378)
Q Consensus 78 ~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~-~d~~--- 145 (378)
...++.||.+. ..+++ .|++|+.||++++|+.....+ .+|... .+....+.+-.....+.+++ ..+.
T Consensus 388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccc
Confidence 23567888887 77877 999999999999999876655 334322 23334444433221111111 1111
Q ss_pred ------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccC
Q 046394 146 ------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 146 ------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~ 207 (378)
-......+.-+.++|.+.+.+++..|+.|+++|..++.+++
T Consensus 467 ~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~--------------------- 525 (577)
T KOG0642|consen 467 DDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH--------------------- 525 (577)
T ss_pred hhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch---------------------
Confidence 11112446677888888888999999999999988766543
Q ss_pred CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394 208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
.... |...++++++.|+|.+|++++.|+
T Consensus 526 --------s~~a-~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 526 --------SMVA-HKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred --------heee-ccceecceeecCCCceEEeecCCc
Confidence 3333 666799999999996665555554
No 168
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.2e-14 Score=119.12 Aligned_cols=161 Identities=13% Similarity=0.190 Sum_probs=116.5
Q ss_pred ccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC----cEEEEEecCCCCeeEEEEcC--CCCEEEEEcCCCe-----
Q 046394 83 KEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG----EIVGNFWTGLGRTDVIRVNP--FNGVVSLGHSGGT----- 145 (378)
Q Consensus 83 ~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~----- 145 (378)
.+|.+. +++.| .+|+|+.|++|.|||.... .+....+.|.+.|..+.|.+ -|+.+|+++.|++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 356665 88888 9999999999999997543 35667788999999999976 5799999999998
Q ss_pred ------------------eeecCCCEEEEEEec--CCCEEEEEECCCeEEEEEcCCc------eeeeee----------c
Q 046394 146 ------------------MLCHQGPVSALAFHP--NGHLMATSGKDCKIKIWDLRKY------EVLQTL----------P 189 (378)
Q Consensus 146 ------------------~~~h~~~v~~~~~sp--~g~~l~t~~~d~~i~iwd~~~~------~~~~~~----------~ 189 (378)
+......|+++.|.| -|-.+|+++.||+||||+...- .+.+.+ +
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 444567899999999 5788999999999999987542 222222 2
Q ss_pred CCceEEEEecCCCc------------------cccC----CCCCceEEEeeccCCcceeeeEEcCCC----CeEEEecCC
Q 046394 190 GHAKTLDFSRKDSG------------------DFSG----SHNYNRYMGYSMVKGYQIGKVSFRPYE----DVLGIGHSM 243 (378)
Q Consensus 190 ~~i~~~~~sp~g~~------------------~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~g----~~l~~~~~~ 243 (378)
.+..|+.|+|.... .+|. .+....+..+.+ |+.+|++++|.|+- .+||+++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeeeccccCCceeeEEEeecC
Confidence 46788999874332 2221 112223344445 88999999999974 234444444
Q ss_pred C
Q 046394 244 G 244 (378)
Q Consensus 244 g 244 (378)
|
T Consensus 249 g 249 (361)
T KOG2445|consen 249 G 249 (361)
T ss_pred c
Confidence 4
No 169
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.65 E-value=1.9e-15 Score=136.68 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=136.8
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCC---CCEEEEEeCCCcEEEEeC--CCCeEEeeccCCCe-eEEEE----
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSS---GRYMAAAGCKGYPYFYNR--DGTELHCSKEHGEV-LKLQF---- 93 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~---g~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~-~~l~~---- 93 (378)
-+.+++|++...+....+..|...|.|+.||.. .++||+++.|.-|+|||. +...+.++.+|... +++.|
T Consensus 480 ~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence 478999999999999999999999999999852 368999999999999994 33344556665543 55555
Q ss_pred --------------------------------------------------EEEEEeCCCeEEEEEcCCCcEEEEEec---
Q 046394 94 --------------------------------------------------LLASINKLGQLRYQNVTMGEIVGNFWT--- 120 (378)
Q Consensus 94 --------------------------------------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~--- 120 (378)
++++++.|..|+|||+.+|+.+..|++
T Consensus 560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD 639 (1080)
T ss_pred CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc
Confidence 789999999999999999999999986
Q ss_pred CCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 121 GLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 121 ~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
|.+..-.+...|.|.|+++...|.+ +.+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 4567888999999999999999988 789999999999999999999999999999999853
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=6.8e-16 Score=141.63 Aligned_cols=243 Identities=14% Similarity=0.078 Sum_probs=186.6
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ 92 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~ 92 (378)
.-..+.+++|..++||...++.+..++.+|.+.++.++.+.+...+|+++.|..|++|- .++.++..+.+|++. ++++
T Consensus 202 g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaia 281 (1113)
T KOG0644|consen 202 GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIA 281 (1113)
T ss_pred cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeec
Confidence 45677788899999999999999999999999999999999988999999999999999 688899999999987 9999
Q ss_pred E-EEEEEeCCCeEEEEEcCCCcEEEEEe-----cCCCCeeEEEEcCCCCEEEEEcCCCe--------eeecCCCEEEEEE
Q 046394 93 F-LLASINKLGQLRYQNVTMGEIVGNFW-----TGLGRTDVIRVNPFNGVVSLGHSGGT--------MLCHQGPVSALAF 158 (378)
Q Consensus 93 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~--------~~~h~~~v~~~~~ 158 (378)
| =+++.+.||++++||.+ ..++...+ ....-+..+.|-..+..+++++.++. +..+...+.-+.+
T Consensus 282 fsP~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ 360 (1113)
T KOG0644|consen 282 FSPRASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR 360 (1113)
T ss_pred cCccccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec
Confidence 9 66688999999999987 11111110 12245667788888889999999887 2223333333333
Q ss_pred ecCC-CEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec-----------CCCccccCCCCCceEEEeeccCCc
Q 046394 159 HPNG-HLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR-----------KDSGDFSGSHNYNRYMGYSMVKGY 223 (378)
Q Consensus 159 sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp-----------~g~~~~~~~~~~~~~~~~~~~~~~ 223 (378)
+.+- .+.+++-.+..+++|++.+|.+++.+ + ..+..+.++| ||...+|+.-.+.++..+.-.| .
T Consensus 361 ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~ 439 (1113)
T KOG0644|consen 361 SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-G 439 (1113)
T ss_pred cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-c
Confidence 3322 34555556778999999999887776 3 5566777776 6677888887777776665424 4
Q ss_pred ceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccc
Q 046394 224 QIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFD 259 (378)
Q Consensus 224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~ 259 (378)
.+.+..||+||..++...+-|.+.++-+|.++...+
T Consensus 440 kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 440 KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK 475 (1113)
T ss_pred eeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence 577889999999999999999888887777765443
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.2e-14 Score=125.02 Aligned_cols=232 Identities=13% Similarity=0.114 Sum_probs=163.1
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEe-CCCC--------------
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYN-RDGT-------------- 77 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd-~~~~-------------- 77 (378)
.+-..+.+.++++++|.+.|+.++..+... +.|.|++|+|.+. .||++ ..+.+.|.+ .-|.
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhcC
Confidence 445566778999999999999999998875 7899999999875 34444 333455555 1110
Q ss_pred -----------------------eEEe-eccCCCeeEEEE-----EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCe
Q 046394 78 -----------------------ELHC-SKEHGEVLKLQF-----LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRT 125 (378)
Q Consensus 78 -----------------------~~~~-~~~~~~~~~l~~-----~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v 125 (378)
-++. +.....+..+.| +|++... ...|.|+++.......-|....+.+
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v 569 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV 569 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence 0111 222223477777 7776654 3568899998776666666677899
Q ss_pred eEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee--c
Q 046394 126 DVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL--P 189 (378)
Q Consensus 126 ~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~ 189 (378)
.++.|+|...+|++++.... +......|.+|+++|.|..|+.++.|+.+..||+.-. ++.+++ |
T Consensus 570 q~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H 649 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH 649 (733)
T ss_pred eEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh
Confidence 99999999999999998776 4445668999999999999999999999999999754 455555 3
Q ss_pred -CCceEEEEec----------CCCccccC---------CCCCceEEEeeccCCcc----eeeeEEcCCCCeEEEecCCCe
Q 046394 190 -GHAKTLDFSR----------KDSGDFSG---------SHNYNRYMGYSMVKGYQ----IGKVSFRPYEDVLGIGHSMGV 245 (378)
Q Consensus 190 -~~i~~~~~sp----------~g~~~~~~---------~~~~~~~~~~~~~~~~~----v~~~~~sp~g~~l~~~~~~g~ 245 (378)
..+++++|++ ||...++. ....-++..+.+ |... |.++.|+|...+|.+++.||.
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g-H~~~~~~gVLd~~wHP~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG-HEKTNDLGVLDTIWHPRQPWLFSAGADGT 728 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC-ceeecccceEeecccCCCceEEecCCCce
Confidence 5667777655 44432221 111223444555 5443 888999999988888888877
Q ss_pred EEEE
Q 046394 246 SGIL 249 (378)
Q Consensus 246 ~~~~ 249 (378)
+.+|
T Consensus 729 irlf 732 (733)
T KOG0650|consen 729 IRLF 732 (733)
T ss_pred EEee
Confidence 6655
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.4e-15 Score=123.31 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=126.2
Q ss_pred CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEE--EecCC-CCe
Q 046394 58 RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGN--FWTGL-GRT 125 (378)
Q Consensus 58 ~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~-~~v 125 (378)
..+|++.+.|.|++|| .+++.+..+.++... +.+.| .+.+|+.||+|++||+++...... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999 678888999999886 88888 899999999999999998654433 33333 467
Q ss_pred eEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCce-
Q 046394 126 DVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYE- 183 (378)
Q Consensus 126 ~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~- 183 (378)
.+++.+-.++.+++|+.--. ...|...|++++|+| +.++|+|||.||.|.|||+..-.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 78888888889998865433 557999999999999 67899999999999999997532
Q ss_pred ---eeeee--cCCceEEEEecCCCccccCCCCCceEEEeec
Q 046394 184 ---VLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSM 219 (378)
Q Consensus 184 ---~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~ 219 (378)
++.++ ...|.++.|..++...+|.....+.+..|..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 24444 4669999999988655555444444444443
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.63 E-value=7.6e-15 Score=121.34 Aligned_cols=206 Identities=19% Similarity=0.234 Sum_probs=151.6
Q ss_pred ecCCCCceEEEEcC-----CCCEEEEEeCCCcEEEEe--CCC--CeEEeecc--CCCe-eEEEE---------EEEEEeC
Q 046394 42 MLPELGPYTLDFTS-----SGRYMAAAGCKGYPYFYN--RDG--TELHCSKE--HGEV-LKLQF---------LLASINK 100 (378)
Q Consensus 42 ~~~~~~v~~~~~sp-----~g~~l~~~~~dg~i~iwd--~~~--~~~~~~~~--~~~~-~~l~~---------~l~s~~~ 100 (378)
..|...++.++|.+ +-..+|++|.+ .+.+|. .++ ..++.+.. |.+. ..++| ++|.+|.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 45678899999984 12356666544 788998 333 23344332 3344 66666 8899999
Q ss_pred CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe-----------------eeecCCCEEEEEEecCC
Q 046394 101 LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT-----------------MLCHQGPVSALAFHPNG 162 (378)
Q Consensus 101 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g 162 (378)
-|.|+|.|+.++++...+.+|.+.|+.+.+.|+. +++++++.|.. +.+|.+.|.++.|+++|
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence 9999999999999999999999999999999987 78999999988 67899999999999999
Q ss_pred CEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCC-CCceEE-EeeccCCcceeeeEEcCCCCeEEEe
Q 046394 163 HLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSH-NYNRYM-GYSMVKGYQIGKVSFRPYEDVLGIG 240 (378)
Q Consensus 163 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~-~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~ 240 (378)
.+|++||.|.+|.+|++...+....+ -.+..|+|++...-+-.. ..-+.+ +-.. |...|.|+.|- |.++++-
T Consensus 194 d~i~ScGmDhslk~W~l~~~~f~~~l---E~s~~~~~~~t~~pfpt~~~~fp~fst~di-HrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 194 DRIASCGMDHSLKLWRLNVKEFKNKL---ELSITYSPNKTTRPFPTPKTHFPDFSTTDI-HRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred CeeeccCCcceEEEEecChhHHhhhh---hhhcccCCCCccCcCCcccccccccccccc-ccchHHHHHHH--hhheeec
Confidence 99999999999999999854432222 123567777765333222 122222 3334 88899999996 5677776
Q ss_pred cCCCeEEEEEcCCC
Q 046394 241 HSMGVSGILIPGSG 254 (378)
Q Consensus 241 ~~~g~~~~~~~~s~ 254 (378)
+-++.+..|.+|.-
T Consensus 268 scenaI~~w~pgkl 281 (385)
T KOG1034|consen 268 SCENAIVCWKPGKL 281 (385)
T ss_pred ccCceEEEEecchh
Confidence 66666677776643
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6e-15 Score=129.72 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=143.1
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-ccCCCe-eEEEE-------EEEEEeCCCeEEEE
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-KEHGEV-LKLQF-------LLASINKLGQLRYQ 107 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~~~~~~-~~l~~-------~l~s~~~d~~i~iw 107 (378)
...|.+|++.|.|+.|+.+|.+|++|+.|-.+.||| ...+.++.+ .+|..- .++.| ++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 456899999999999999999999999999999999 666677766 467654 88999 99999999999999
Q ss_pred EcCC----------CcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe------------------------eeecCCC
Q 046394 108 NVTM----------GEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT------------------------MLCHQGP 152 (378)
Q Consensus 108 d~~~----------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------------------------~~~h~~~ 152 (378)
|+.. ......+..|...|..|+-.|++ ..+.+++.||. +...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9974 22344556688889999999999 79999999999 1111123
Q ss_pred EEEEEEec-CCCEEEEEECCCeEEEEEcCCc-eeeeee-------cCCceEE-EEecCCCccccCCCCCceEEEeeccCC
Q 046394 153 VSALAFHP-NGHLMATSGKDCKIKIWDLRKY-EVLQTL-------PGHAKTL-DFSRKDSGDFSGSHNYNRYMGYSMVKG 222 (378)
Q Consensus 153 v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~-~~~~~~-------~~~i~~~-~~sp~g~~~~~~~~~~~~~~~~~~~~~ 222 (378)
..|++++| +..+|+.|+.|-..++||.+.. +....- +....|+ .|+|.+.... .+.....+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~----~gn~~~~~----- 273 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS----QGNLDRYI----- 273 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc----ccccccce-----
Confidence 56889999 5667999999999999996532 111111 1122333 3555543110 11111111
Q ss_pred cceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 223 YQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
..++-++|+|+|.-|.+.-....+.++
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlf 300 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLF 300 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEE
Confidence 236789999999766655544443333
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.2e-14 Score=111.85 Aligned_cols=217 Identities=15% Similarity=0.145 Sum_probs=150.5
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCC----------C-CeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcC
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRD----------G-TELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVT 110 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~----------~-~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~ 110 (378)
..|++-+|+|.+++|++|+.+|.|.++.+. | ..+...++|.++ ..++| +|++|+ ||.|+-|...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeeh
Confidence 456777899999999999999999999842 1 234556899987 99999 666665 4999999875
Q ss_pred CCcE------EEEE--ec-----CCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCC
Q 046394 111 MGEI------VGNF--WT-----GLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGH 163 (378)
Q Consensus 111 ~~~~------~~~~--~~-----~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~ 163 (378)
.... +... +. .--.|+++...|..+-++.++.|+. +.+|.+.|.++.--....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 3211 1111 11 1235889999998877777777776 789999999998844444
Q ss_pred EEEEEECCCeEEEEEcCCceeeeee----c---------CCceEEEEecC------C-CccccCCCCCceEEEeeccCCc
Q 046394 164 LMATSGKDCKIKIWDLRKYEVLQTL----P---------GHAKTLDFSRK------D-SGDFSGSHNYNRYMGYSMVKGY 223 (378)
Q Consensus 164 ~l~t~~~d~~i~iwd~~~~~~~~~~----~---------~~i~~~~~sp~------g-~~~~~~~~~~~~~~~~~~~~~~ 223 (378)
.+++|+.||++||||+++++++..+ + ..|.+++-+.| | ...+|..+..++...+.. ..
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi--pa 247 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI--PA 247 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec--cc
Confidence 6999999999999999999998877 1 12344443332 2 137788777777777654 56
Q ss_pred ceeeeEEcCCCCeEEEe-c-------CCCeEEEEEcCCCC-cccccccCCCc
Q 046394 224 QIGKVSFRPYEDVLGIG-H-------SMGVSGILIPGSGE-PNFDSWVANPF 266 (378)
Q Consensus 224 ~v~~~~~sp~g~~l~~~-~-------~~g~~~~~~~~s~d-~~i~~w~~~~~ 266 (378)
++..+.|..| ..|+.| + .+|.+...++++.- .....|...|.
T Consensus 248 ~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 248 RVHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred ceeEeeeecc-eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence 7888999755 344444 2 35555555555443 34556665553
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.3e-14 Score=123.99 Aligned_cols=284 Identities=11% Similarity=0.095 Sum_probs=185.7
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE-----EEEEEeC-----------CCeEEEEEc
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF-----LLASINK-----------LGQLRYQNV 109 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~-----~l~s~~~-----------d~~i~iwd~ 109 (378)
.-+-+.|||-|.||+|-...| |.+|-- +-..++. ..|.++.-+.| +|+|-+. ...++|||+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R-F~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR-FYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHh-ccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 345789999999999998776 889973 3233333 35777766777 7777542 257999999
Q ss_pred CCCcEEEEEecC--CCCe-eEEEEcCCCCEEEEEcCCCe-----------------------------------------
Q 046394 110 TMGEIVGNFWTG--LGRT-DVIRVNPFNGVVSLGHSGGT----------------------------------------- 145 (378)
Q Consensus 110 ~~~~~~~~~~~~--~~~v-~~~~~s~~~~~l~~~~~d~~----------------------------------------- 145 (378)
.+|...+.|... ...+ .-..||.|+.++|.-..++.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 999988887652 2223 23578888888887766665
Q ss_pred -----------------------------------------------------------------------eeecCCCEE
Q 046394 146 -----------------------------------------------------------------------MLCHQGPVS 154 (378)
Q Consensus 146 -----------------------------------------------------------------------~~~h~~~v~ 154 (378)
...-...|.
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi 449 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI 449 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence 112245677
Q ss_pred EEEEecCCCEEEEEECC---CeEEEEEcCC----ceeeeee-cCCceEEEEecCCCccccCC---CCCceE---------
Q 046394 155 ALAFHPNGHLMATSGKD---CKIKIWDLRK----YEVLQTL-PGHAKTLDFSRKDSGDFSGS---HNYNRY--------- 214 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~~d---~~i~iwd~~~----~~~~~~~-~~~i~~~~~sp~g~~~~~~~---~~~~~~--------- 214 (378)
..+|-|.|+.+++.+.. .++.+|-+.+ ..++..+ ....+.+.|+|.|.+.+... ..+...
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~ 529 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL 529 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence 88999999988876643 4788998873 2334455 57889999999999733211 011111
Q ss_pred -EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCC
Q 046394 215 -MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNP 293 (378)
Q Consensus 215 -~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (378)
.+-.. .....+.+.|.|.|+|++++++.+ ...-|...++|+...-.. ++..+ .
T Consensus 530 k~~~~~-eh~~at~veWDPtGRYvvT~ss~w------rhk~d~GYri~tfqGrll----~~~~i-----~---------- 583 (698)
T KOG2314|consen 530 KDTASP-EHFAATEVEWDPTGRYVVTSSSSW------RHKVDNGYRIFTFQGRLL----KEDII-----D---------- 583 (698)
T ss_pred hhccCc-cccccccceECCCCCEEEEeeehh------hhccccceEEEEeecHHH----HHHHH-----H----------
Confidence 11111 223467899999999999987754 344577788887543211 11111 0
Q ss_pred CceeeecccccccCcchhhhhhHHHHHHHhhcccccccCCCCCCchhhHHHhhhhhhccccchhHH
Q 046394 294 SKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLD 359 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 359 (378)
++.+..++++......+++.++..++.++..+.++++.++. ..++.++.-.|+++.+.+..+.+.
T Consensus 584 ~f~qF~WRPRPps~LS~e~~KkIkKnLKky~a~FeeqD~~e-~~~AsrElvekrRqlm~~f~~yR~ 648 (698)
T KOG2314|consen 584 RFKQFLWRPRPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLE-QSRASRELVEKRRQLMEQFTEYRE 648 (698)
T ss_pred HHHhhccCCCCCcccCHHHHHHHHHHHHHHHHHHhhhhhHh-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 24455666666666677777777788888888887777765 556666766666777666544333
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=3.4e-14 Score=115.66 Aligned_cols=198 Identities=15% Similarity=0.207 Sum_probs=140.7
Q ss_pred eccceeeeeecccceee----EEe-----ecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCC
Q 046394 22 KQEAIAREVDILSSRNQ----YDI-----MLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGE 87 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~----~~l-----~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~ 87 (378)
+.+..+++|.+..-... ..| ..+..++++..|+- +-++|.+++-|.+..|||+.. .....+-+|..
T Consensus 118 Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 118 TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence 44567777777632211 111 22445788999986 557899999999999999432 34556778876
Q ss_pred e-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEe---cCCCCeeEEEEcCCC-CEEEEEcCCCe-----------
Q 046394 88 V-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFW---TGLGRTDVIRVNPFN-GVVSLGHSGGT----------- 145 (378)
Q Consensus 88 ~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-~~l~~~~~d~~----------- 145 (378)
. ..++| .||++|.||.|+++|++.-.-...+- ....+...++|++.. +++|+-..|..
T Consensus 198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC 277 (364)
T ss_pred ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC
Confidence 5 99999 99999999999999998754332222 224567788888855 67777766665
Q ss_pred -----eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeec
Q 046394 146 -----MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSM 219 (378)
Q Consensus 146 -----~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~ 219 (378)
+.+|.+.|+.++|.| ....|+|+|.|..+.|||+.+.-. .....++..+..
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPilay~a 334 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILAYTA 334 (364)
T ss_pred cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc-----------------------cCCCCchhhhhc
Confidence 789999999999999 567899999999999999976210 012233444433
Q ss_pred cCCcceeeeEEcCC-CCeEEEecCCC
Q 046394 220 VKGYQIGKVSFRPY-EDVLGIGHSMG 244 (378)
Q Consensus 220 ~~~~~v~~~~~sp~-g~~l~~~~~~g 244 (378)
+..|+.+.|+|. +.+++++....
T Consensus 335 --~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 335 --GGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred --cceeeeeeecccCCCEEEEEecCe
Confidence 456999999964 46777776654
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=127.18 Aligned_cols=185 Identities=11% Similarity=0.108 Sum_probs=139.7
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF- 93 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~- 93 (378)
|.++.-++||.+.+.+ ..++.-..+..|.+++.|-.|+|||.-|++++.||.|++|..+|....++.....+ .|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence 3344445688888776 35566678899999999999999999999999999999999888765555555444 99999
Q ss_pred -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEE
Q 046394 94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSA 155 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~ 155 (378)
.+.+.+ +.+.|=.+.....+-....|.+-|.++.|++.+.++++|+.|-. -..|..+|++
T Consensus 155 p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITS 232 (737)
T KOG1524|consen 155 PNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITS 232 (737)
T ss_pred CCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceee
Confidence 455443 56777766666666678899999999999999999999999977 3468899999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCce
Q 046394 156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNR 213 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~ 213 (378)
++|+|+ ..++.+|. +++++=..+ .+.|-.++|||||.........+..
T Consensus 233 va~npd-~~~~v~S~-nt~R~~~p~--------~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSY-NTARFSSPR--------VGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred eeeccc-cceeeeee-eeeeecCCC--------ccceEEEEEcCCCceeeccccCceE
Confidence 999999 56666653 344421111 3678899999999864444444433
No 179
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=99.62 E-value=9.6e-16 Score=99.33 Aligned_cols=73 Identities=63% Similarity=1.105 Sum_probs=71.0
Q ss_pred CCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCC
Q 046394 221 KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNP 293 (378)
Q Consensus 221 ~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (378)
.+..|.++.|.|-..+|++|+..|+.+++++|+++.+++.+..+||++.++++|.|+++|++|+|+++|++||
T Consensus 8 ~~~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~LdP 80 (80)
T PF08149_consen 8 PGSPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITLDP 80 (80)
T ss_pred CCCeeeeeEEechHHeeEeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceecCc
Confidence 5778999999999999999999999999999999999999999999999999999999999999999999986
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.1e-15 Score=144.90 Aligned_cols=178 Identities=19% Similarity=0.167 Sum_probs=130.4
Q ss_pred CCceEEEEcCCCCE----EEEEeCCCcEEEEeCC----CC---eEEeeccCCCe-eEEEE------EEEEEeCCCeEEEE
Q 046394 46 LGPYTLDFTSSGRY----MAAAGCKGYPYFYNRD----GT---ELHCSKEHGEV-LKLQF------LLASINKLGQLRYQ 107 (378)
Q Consensus 46 ~~v~~~~~sp~g~~----l~~~~~dg~i~iwd~~----~~---~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iw 107 (378)
..-+.++|++.|.. ||.|..||.|.+||.. +. .+.++..|.+. ..+.| ++|+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45679999998765 8888999999999942 22 34566778876 88999 99999999999999
Q ss_pred EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeee
Q 046394 108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQ 186 (378)
Q Consensus 108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~ 186 (378)
|+..-+.-.++.. ......|.+++|+.. .+.|++++.+|.+.|||++..+.+-
T Consensus 145 Dlnn~~tP~~~~~--------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 145 DLNKPETPFTPGS--------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred ccCCcCCCCCCCC--------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 9976443332210 023567888888873 4568888889999999999887776
Q ss_pred ee--c---CCceEEEEecCCCc--------------cccCCC-CCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCe
Q 046394 187 TL--P---GHAKTLDFSRKDSG--------------DFSGSH-NYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGV 245 (378)
Q Consensus 187 ~~--~---~~i~~~~~sp~g~~--------------~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~ 245 (378)
.+ + ..+..+.|+|+... .+|+.+ ...++..+.+ |...|.++.|++.+ .+|++++.|+.
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG-HQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc-cccceeeeccCCCCchhhhcccCCCC
Confidence 66 2 34788999998874 444432 2234444455 88889999999987 78888888886
Q ss_pred EEEEE
Q 046394 246 SGILI 250 (378)
Q Consensus 246 ~~~~~ 250 (378)
+..|-
T Consensus 278 ii~wN 282 (1049)
T KOG0307|consen 278 IICWN 282 (1049)
T ss_pred eeEec
Confidence 65443
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2.2e-14 Score=126.59 Aligned_cols=207 Identities=17% Similarity=0.146 Sum_probs=142.8
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCeEEeeccCCCe-eEEEE-----EEEEEeCCC
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---------GTELHCSKEHGEV-LKLQF-----LLASINKLG 102 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~ 102 (378)
.+++..|...+..++|.|....|++++.||.|.+|++. -.++.+|++|.++ .|+++ .+++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 45777899999999999999999999999999999961 2567899999997 88888 999999999
Q ss_pred eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
+|+.|++....- .+..+...+. .+.+.||.+.|+.+++|+....|++|+.||++++|+....
T Consensus 367 ~I~~w~~p~n~d--p~ds~dp~vl----------------~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 367 TIRCWNLPPNQD--PDDSYDPSVL----------------SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred eeeeeccCCCCC--cccccCcchh----------------ccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 999998752111 1111100000 0115699999999999998889999999999999998776
Q ss_pred eeeeee-----cCCceEEEEecCC-----------CccccCCCCCceEEEeec------cCCcceeeeEEcCCCCeEEEe
Q 046394 183 EVLQTL-----PGHAKTLDFSRKD-----------SGDFSGSHNYNRYMGYSM------VKGYQIGKVSFRPYEDVLGIG 240 (378)
Q Consensus 183 ~~~~~~-----~~~i~~~~~sp~g-----------~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~ 240 (378)
.+ .++ ++...++.+-... .+.+.+......+..+.. .....++.+.++|.+.+..++
T Consensus 429 ~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~ 507 (577)
T KOG0642|consen 429 SP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA 507 (577)
T ss_pred Cc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec
Confidence 65 444 3444555543321 122222222222222211 011346677788888777777
Q ss_pred cCCCeEE------------------------------EEEcCCCCcccccccC
Q 046394 241 HSMGVSG------------------------------ILIPGSGEPNFDSWVA 263 (378)
Q Consensus 241 ~~~g~~~------------------------------~~~~~s~d~~i~~w~~ 263 (378)
..++.++ ++.+|+.|+.+++|..
T Consensus 508 hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 508 HEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 7777554 5677777888888865
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.7e-14 Score=123.05 Aligned_cols=171 Identities=20% Similarity=0.188 Sum_probs=127.1
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC-CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEec-
Q 046394 49 YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG-EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWT- 120 (378)
Q Consensus 49 ~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~-~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~- 120 (378)
.+++|+++|..|++|+.||++|||+ .+...+.....|. ++.++.| +|++.+.| ..+||+..+|.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 5899999999999999999999999 6666555555555 5699999 89999999 899999999977766653
Q ss_pred -CCCCeeEEEEcCCC---CEEEEE-cCCCe--------------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394 121 -GLGRTDVIRVNPFN---GVVSLG-HSGGT--------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK 175 (378)
Q Consensus 121 -~~~~v~~~~~s~~~---~~l~~~-~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~ 175 (378)
.+..+..+.|+.|+ .+++.+ ...+. .......|.+++.+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23456678888877 333222 22222 111234799999999999999999999999
Q ss_pred EEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 176 IWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 176 iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
|++..+.+.++ ..-.. |...|+.+.|+||.+++++.+.+....++
T Consensus 307 i~~~~~lq~~~----------------------------~vk~a-H~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 307 IYDAKSLQRLQ----------------------------YVKEA-HLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEeceeeeeE----------------------------eehhh-heeeeeeEEEcCCcCcccccccCCceeEE
Confidence 99987654332 22223 77789999999999888876666554443
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.6e-14 Score=119.39 Aligned_cols=227 Identities=13% Similarity=0.094 Sum_probs=163.8
Q ss_pred EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeEEeeccCC--CeeEEEE-----EEEEEeCCCeE
Q 046394 39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------TELHCSKEHG--EVLKLQF-----LLASINKLGQL 104 (378)
Q Consensus 39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~--~~~~l~~-----~l~s~~~d~~i 104 (378)
..+.+|.+.|.++.||.++++|++|+.|-.+++|++.. +++.....|. .+.+++| .+++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34678999999999999999999999999999999532 3343333332 3499999 89999999999
Q ss_pred EEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEec-CCCE
Q 046394 105 RYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHP-NGHL 164 (378)
Q Consensus 105 ~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp-~g~~ 164 (378)
...|+.+.+.+..+... .+.|..+..+|..+.|++.+.++. .........++-|+| ...+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99999999988777533 358999999999999999998887 111223456778999 5677
Q ss_pred EEEEECCCeEEEEEcCCce-eeeee------cC---CceEEEEecCCCc-------------------------------
Q 046394 165 MATSGKDCKIKIWDLRKYE-VLQTL------PG---HAKTLDFSRKDSG------------------------------- 203 (378)
Q Consensus 165 l~t~~~d~~i~iwd~~~~~-~~~~~------~~---~i~~~~~sp~g~~------------------------------- 203 (378)
|++.+..+-+.+||.+... ++..+ +. ...++.|+|.|..
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 8899999999999997632 22221 11 1245666666640
Q ss_pred ---------------------------cccCCC-----------------------CCceEEEeeccCCcceeeeEEcCC
Q 046394 204 ---------------------------DFSGSH-----------------------NYNRYMGYSMVKGYQIGKVSFRPY 233 (378)
Q Consensus 204 ---------------------------~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~sp~ 233 (378)
.+|... -...+.++++ |.+-++.|.|+|.
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG-HRSv~NQVRF~~H 368 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG-HRSVPNQVRFSQH 368 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec-ccccccceeecCC
Confidence 222110 0123456777 8888999999999
Q ss_pred CCeEEEecCCCeEEEEE----cCCCCcccccccCCCc
Q 046394 234 EDVLGIGHSMGVSGILI----PGSGEPNFDSWVANPF 266 (378)
Q Consensus 234 g~~l~~~~~~g~~~~~~----~~s~d~~i~~w~~~~~ 266 (378)
..+|++++-...+.+|. +++.|+.|.-+....|
T Consensus 369 ~~~l~SSGVE~~~KlWS~~r~P~~~D~~~E~~~H~~Y 405 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSDHRLPWSYDLPFERRPHGTY 405 (609)
T ss_pred cceEeccchhhheeccccccCCcccCCccccCCCccc
Confidence 98888888888888874 5666666655544333
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.4e-14 Score=128.09 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=118.7
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE-----EE
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF-----LL 95 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l 95 (378)
..|.+||..... ...+..|...+.+.+|||||+.|+.++.+ ..|++||..+.....+....+. ..++| .|
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 578899986544 56677787889999999999999887653 3699999654433333222222 45777 45
Q ss_pred EE-EeCCCeEEE--EEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe--------------eeecCCCEEEEE
Q 046394 96 AS-INKLGQLRY--QNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT--------------MLCHQGPVSALA 157 (378)
Q Consensus 96 ~s-~~~d~~i~i--wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--------------~~~h~~~v~~~~ 157 (378)
+. .+.+|.+.| ||+.++.. ..+..+...+..+.|+|||+.|+.++ .++. ...+.+ .+++
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~ 339 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQ 339 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCcc
Confidence 54 446776555 46655554 44555666788899999999776554 3443 111222 4578
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEEEEecCCCcccc
Q 046394 158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~ 206 (378)
|+|+|++|+.++.++ +.+||+.++...... .....+++|+|||...++
T Consensus 340 ~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 340 ISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIY 388 (429)
T ss_pred CCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEE
Confidence 999999998888765 556999887654322 233456789999886444
No 185
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.60 E-value=3.1e-14 Score=127.26 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=140.1
Q ss_pred eEEEEcCC---CCEEEEEeCCCcEEEEeCCCC-------eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC
Q 046394 49 YTLDFTSS---GRYMAAAGCKGYPYFYNRDGT-------ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG 112 (378)
Q Consensus 49 ~~~~~sp~---g~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~ 112 (378)
++..|++. .+.||.+..||.|.++|.... .+.....|..+ .++.| .|++++.|.++++||+.++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 45677653 357899999999999994322 23456678876 89999 9999999999999999998
Q ss_pred cEEEE--EecCCCCeeEEEEcCCC-CEEEEEcCCCe-----------------------------------------eee
Q 046394 113 EIVGN--FWTGLGRTDVIRVNPFN-GVVSLGHSGGT-----------------------------------------MLC 148 (378)
Q Consensus 113 ~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~d~~-----------------------------------------~~~ 148 (378)
.++.. +.+|.+.|.+++|.|.+ ..|++|+.||. -..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 88776 88999999999999987 57888999998 223
Q ss_pred cCCCEEE---EEEecCCCEEEEEEC-CCeEEEEEcCCceeeeee----------c----CCceEEEEecCCCccccCCCC
Q 046394 149 HQGPVSA---LAFHPNGHLMATSGK-DCKIKIWDLRKYEVLQTL----------P----GHAKTLDFSRKDSGDFSGSHN 210 (378)
Q Consensus 149 h~~~v~~---~~~sp~g~~l~t~~~-d~~i~iwd~~~~~~~~~~----------~----~~i~~~~~sp~g~~~~~~~~~ 210 (378)
+...|.+ +.+..|...||++|. |+.|+|||++........ + -.+.++.....|.+.+.+..+
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 3344555 556678889999987 999999999975443322 1 235666666666665444433
Q ss_pred CceE------------EEeecc--CCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394 211 YNRY------------MGYSMV--KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 211 ~~~~------------~~~~~~--~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~ 252 (378)
...| ..+.+. ....| .-..+||+.+|++|+.++...+|...
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeec
Confidence 3322 222110 00111 12357888777777777766665543
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=4.6e-12 Score=113.23 Aligned_cols=226 Identities=12% Similarity=0.071 Sum_probs=138.1
Q ss_pred eccceeeeeeccc-ce--eeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCe--EEeeccCCCeeEEEE
Q 046394 22 KQEAIAREVDILS-SR--NQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRD--GTE--LHCSKEHGEVLKLQF 93 (378)
Q Consensus 22 ~~~~~i~~~d~~~-~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~~l~~ 93 (378)
..++.|.+||+.+ +. .+..+.. .+.+..++++|++++|++++ .++.|.+|+.+ +.. +........+..+.|
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 4467888999864 32 3344443 36788999999999987765 47889999964 222 122222223467777
Q ss_pred -----EEEE-EeCCCeEEEEEcCC-Cc---EEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce-----eee---------
Q 046394 94 -----LLAS-INKLGQLRYQNVTM-GE---IVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT-----MLC--------- 148 (378)
Q Consensus 94 -----~l~s-~~~d~~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~-----~~~--------- 148 (378)
++++ ...++.|.+|++.+ +. .+..+. +...+.+++++|+++++++++.. +. +..
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 4444 44589999999964 32 233332 23456788999999988766654 33 111
Q ss_pred ------cCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCC--c--eeeeee---cC------CceEEEEecCCCccccCC
Q 046394 149 ------HQGPVSALAFHPNGHLMATSGK-DCKIKIWDLRK--Y--EVLQTL---PG------HAKTLDFSRKDSGDFSGS 208 (378)
Q Consensus 149 ------h~~~v~~~~~sp~g~~l~t~~~-d~~i~iwd~~~--~--~~~~~~---~~------~i~~~~~sp~g~~~~~~~ 208 (378)
.......++|+|+|++++++.. +++|.+||+.. + +.+..+ +. ....+.|+|+|++.+...
T Consensus 167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 167 AEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 0112357899999999877765 89999999973 3 233333 11 223588999998633322
Q ss_pred CCCceEEEeec-------------cCCcceeeeEEcCCCCeEEEecC-CCeEEEE
Q 046394 209 HNYNRYMGYSM-------------VKGYQIGKVSFRPYEDVLGIGHS-MGVSGIL 249 (378)
Q Consensus 209 ~~~~~~~~~~~-------------~~~~~v~~~~~sp~g~~l~~~~~-~g~~~~~ 249 (378)
.....+..+.. ..+.....+.|+|+|++|++++. ++.+.+|
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 21122211110 01223567899999988876654 4544444
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=4.5e-15 Score=122.77 Aligned_cols=197 Identities=15% Similarity=0.198 Sum_probs=138.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-eccCCCeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCC
Q 046394 50 TLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKEHGEVLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGL 122 (378)
Q Consensus 50 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 122 (378)
-++|||+|+++|+++.. .+.|-|...-.++. +..-..+..+.| .+.....++.|.+|++...+-...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46899999999999766 67777754433322 222223345555 66777889999999999988888888888
Q ss_pred CCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCe---EEEEEcCCceee
Q 046394 123 GRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCK---IKIWDLRKYEVL 185 (378)
Q Consensus 123 ~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~---i~iwd~~~~~~~ 185 (378)
..+..++|||||+.|+..+.-.. +...+..+..++|+|||++.+.++.-.. +.|..-....++
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll 171 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL 171 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence 99999999999976665554332 2222345688999999999988885432 222222233344
Q ss_pred eee---cCCceEEEEecCCCc-cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 186 QTL---PGHAKTLDFSRKDSG-DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 186 ~~~---~~~i~~~~~sp~g~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
..+ .-..+.+.|||||.. .+|+..-.-.+..+. -+-.+..+.|+|.+++|++|+.|+.++++
T Consensus 172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HhcCCCcccccCceECCCCcEEEEecchhhheeeeee--eccceeEEEeccccceEEeeccchhhhhh
Confidence 444 345688999999986 667754333333332 24568999999999999999999877654
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1.5e-12 Score=109.54 Aligned_cols=193 Identities=17% Similarity=0.164 Sum_probs=132.9
Q ss_pred eeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC--cEEEEeC-CCCeEEeeccCCCeeEEEE---EEEEEeC
Q 046394 27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG--YPYFYNR-DGTELHCSKEHGEVLKLQF---LLASINK 100 (378)
Q Consensus 27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg--~i~iwd~-~~~~~~~~~~~~~~~~l~~---~l~s~~~ 100 (378)
-+++......+.+........|.-+-||. .++|..+.+. .+++++. .+..+..+.-...+.++.+ .|+++-.
T Consensus 28 yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Le 105 (391)
T KOG2110|consen 28 YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLE 105 (391)
T ss_pred eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEc
Confidence 34444444444333333334566677774 4666665543 4888884 4555666666666666666 6666555
Q ss_pred CCeEEEEEcCCCcEEEEEecC---CCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecC
Q 046394 101 LGQLRYQNVTMGEIVGNFWTG---LGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPN 161 (378)
Q Consensus 101 d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~ 161 (378)
+. |+|||+.+-+.+.++... ...+.++.+++.+.+++.-+.... +..|.+++-+++|+|+
T Consensus 106 e~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 106 ES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred cc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC
Confidence 44 999999999988887654 334555666666668876433222 7899999999999999
Q ss_pred CCEEEEEECCCe-EEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394 162 GHLMATSGKDCK-IKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIG 240 (378)
Q Consensus 162 g~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 240 (378)
|.+|||+|..|+ ||||.+.+|+.+..|.... + ...|.+++|+|++++|++.
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---------------------~-------~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---------------------Y-------PVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCc---------------------e-------eeEEEEEEECCCCCeEEEe
Confidence 999999999995 7899999988877761110 1 1237788888888888888
Q ss_pred cCCCeEEEEE
Q 046394 241 HSMGVSGILI 250 (378)
Q Consensus 241 ~~~g~~~~~~ 250 (378)
++.+.+++|-
T Consensus 237 S~TeTVHiFK 246 (391)
T KOG2110|consen 237 SNTETVHIFK 246 (391)
T ss_pred cCCCeEEEEE
Confidence 8888887773
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.3e-13 Score=123.30 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=163.2
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC---CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG---RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLK 90 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g---~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~ 90 (378)
..+++.+.....|.||...|++++..+..|...+.++.+.|.. .++++++.+|.|++|| .++..+.++..+..+.+
T Consensus 27 D~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~ 106 (792)
T KOG1963|consen 27 DAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA 106 (792)
T ss_pred CCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence 5677888889999999999999999999999999999998855 4678999999999999 45544444433222211
Q ss_pred EEE---------------------------------------------------------------EEEEEeCCCeEEEE
Q 046394 91 LQF---------------------------------------------------------------LLASINKLGQLRYQ 107 (378)
Q Consensus 91 l~~---------------------------------------------------------------~l~s~~~d~~i~iw 107 (378)
+.+ .+...-.+..+.+|
T Consensus 107 ~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~ 186 (792)
T KOG1963|consen 107 LVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIY 186 (792)
T ss_pred EEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEE
Confidence 100 11111223445566
Q ss_pred EcCCCcEEE-E---EecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEE
Q 046394 108 NVTMGEIVG-N---FWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLM 165 (378)
Q Consensus 108 d~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l 165 (378)
+........ . -..|.-.+++.++||.++++|+|..+|. +..|...|++++|+++|.+|
T Consensus 187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 187 FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred EecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceE
Confidence 665533100 0 0124445789999999999999999988 67899999999999999999
Q ss_pred EEEECCCeEEEEEcCCcee--eeeecCCceEEEEecCCCccccCCCCCceEE----------Eeec---c-------CCc
Q 046394 166 ATSGKDCKIKIWDLRKYEV--LQTLPGHAKTLDFSRKDSGDFSGSHNYNRYM----------GYSM---V-------KGY 223 (378)
Q Consensus 166 ~t~~~d~~i~iwd~~~~~~--~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~----------~~~~---~-------~~~ 223 (378)
++||..+.+.+|.+.+++. +-.+.++|..+.+|||+....-...+.+... ...+ . ...
T Consensus 267 lSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred eecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 9999999999999998772 2222689999999999985222111111110 0000 0 122
Q ss_pred ceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 224 QIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
-.+.++++|.-..++..+..|.++++.
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEe
Confidence 346677888666777777777666654
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=1.5e-12 Score=109.54 Aligned_cols=227 Identities=14% Similarity=0.104 Sum_probs=145.5
Q ss_pred EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccC-CCe---eEEEE
Q 046394 19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEH-GEV---LKLQF 93 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~-~~~---~~l~~ 93 (378)
+...+...++++++.....+-.+... ..|.++.++. +.|+++-.+ .|+|||+ +...++++... ..+ .++.+
T Consensus 62 V~~~qpr~Lkv~~~Kk~~~ICe~~fp-t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 62 VSIKQPRKLKVVHFKKKTTICEIFFP-TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred EecCCCceEEEEEcccCceEEEEecC-CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeecc
Confidence 33344455666666666555555543 6788888864 356666554 5999994 55667776554 222 33333
Q ss_pred -----EEEE--EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eee-----c
Q 046394 94 -----LLAS--INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLC-----H 149 (378)
Q Consensus 94 -----~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~-----h 149 (378)
+++- ....|.|.+||+.+-+++..+..|.+.+.+++|+++|.+||+++..|+ +.. .
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~ 217 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY 217 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence 4443 334689999999999999999999999999999999999999999999 111 1
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---------cC--CceEEEEecCCCccccCCCCCceEEEee
Q 046394 150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---------PG--HAKTLDFSRKDSGDFSGSHNYNRYMGYS 218 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---------~~--~i~~~~~sp~g~~~~~~~~~~~~~~~~~ 218 (378)
...|.+++|+|++.+|++.|..++|.||-+.... .... .. ....+++-|..-..+|+....-......
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~ 296 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLP 296 (391)
T ss_pred eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEcc
Confidence 2457899999999999999999999999987533 1111 00 1111223343333444433322233332
Q ss_pred ccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
......+..+.=.+....+.+++.||....+-
T Consensus 297 ~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~ 328 (391)
T KOG2110|consen 297 ESGRKNICSLSSIQKIPRVLVASYDGHLYSYR 328 (391)
T ss_pred CCCccceEEeeccCCCCEEEEEEcCCeEEEEE
Confidence 20111233333335778888888888665553
No 191
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.5e-13 Score=120.74 Aligned_cols=185 Identities=15% Similarity=0.196 Sum_probs=100.8
Q ss_pred ceeeEEEeccceeeeeecccceeeE-Ee---ecCCCCceEEEE-----cCCCCEEEEEeCCCcEEEEeCCCCeEEee---
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQY-DI---MLPELGPYTLDF-----TSSGRYMAAAGCKGYPYFYNRDGTELHCS--- 82 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~-~l---~~~~~~v~~~~~-----sp~g~~l~~~~~dg~i~iwd~~~~~~~~~--- 82 (378)
....+.+.....+.+|+...+.... .+ ......+.|-+| .|.+--|+.|-..|.|.+.|.....+..+
T Consensus 134 ~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne 213 (636)
T KOG2394|consen 134 KGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNE 213 (636)
T ss_pred CCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhh
Confidence 3445666667778888876432211 11 111234455555 35666788898899999999433322221
Q ss_pred ---ccCCCeeEEEE------EEEEEeCCCeEEEEEcCC--------------C--------------cEEEEEecCCCCe
Q 046394 83 ---KEHGEVLKLQF------LLASINKLGQLRYQNVTM--------------G--------------EIVGNFWTGLGRT 125 (378)
Q Consensus 83 ---~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~--------------~--------------~~~~~~~~~~~~v 125 (378)
.....++++.| .|+.+-.+|.+.+||... + .++..+....+.|
T Consensus 214 ~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i 293 (636)
T KOG2394|consen 214 ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSI 293 (636)
T ss_pred cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccc
Confidence 11234588999 777788889999997621 0 0111111122345
Q ss_pred eEEEEcCCCCEEEEEcCCCe---eeec-----------CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---
Q 046394 126 DVIRVNPFNGVVSLGHSGGT---MLCH-----------QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--- 188 (378)
Q Consensus 126 ~~~~~s~~~~~l~~~~~d~~---~~~h-----------~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--- 188 (378)
+..+|+|||++||+.+.||. +.-+ -+...|++|||||+||++|+.|..|.||.+...+.+..-
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence 55555555555555555555 1111 134555555555555555555555555555555554444
Q ss_pred cCCceEEEEec
Q 046394 189 PGHAKTLDFSR 199 (378)
Q Consensus 189 ~~~i~~~~~sp 199 (378)
.+.|+.|+|.|
T Consensus 374 kSWVs~VaFDp 384 (636)
T KOG2394|consen 374 KSWVSVVAFDP 384 (636)
T ss_pred ccceeeEeecc
Confidence 24555555554
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3e-13 Score=127.56 Aligned_cols=230 Identities=13% Similarity=0.160 Sum_probs=157.3
Q ss_pred EeccceeeeeecccceeeEEeecCC---CCceEEEEcC--CCCEEEEEeCCCcEEEEe--CCC----CeEEe---eccC-
Q 046394 21 IKQEAIAREVDILSSRNQYDIMLPE---LGPYTLDFTS--SGRYMAAAGCKGYPYFYN--RDG----TELHC---SKEH- 85 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~~~~~l~~~~---~~v~~~~~sp--~g~~l~~~~~dg~i~iwd--~~~----~~~~~---~~~~- 85 (378)
......|.+||.+.++....+..+. ..|+.+.+-. |..++++|+.||.|+||+ .++ +.+.. +.++
T Consensus 1082 ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~ 1161 (1387)
T KOG1517|consen 1082 ADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQL 1161 (1387)
T ss_pred cCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccC
Confidence 3346788899999888876666543 4578888865 345899999999999999 232 11221 2222
Q ss_pred ---CCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCC-CCeeEEEEc-CCCCEEEEEcCCCe---------
Q 046394 86 ---GEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGL-GRTDVIRVN-PFNGVVSLGHSGGT--------- 145 (378)
Q Consensus 86 ---~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s-~~~~~l~~~~~d~~--------- 145 (378)
.+. .-++| .|+++|.-..|+|||....+.+..+.... ..++++.-+ +.|+.|++|..||.
T Consensus 1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence 122 33455 67777778899999999888888776543 446666544 34689999999998
Q ss_pred --------eeecCCC--EEEEEEecCCCE-EEEEECCCeEEEEEcCCceeeeee----c---C-CceEEEEecCCCc---
Q 046394 146 --------MLCHQGP--VSALAFHPNGHL-MATSGKDCKIKIWDLRKYEVLQTL----P---G-HAKTLDFSRKDSG--- 203 (378)
Q Consensus 146 --------~~~h~~~--v~~~~~sp~g~~-l~t~~~d~~i~iwd~~~~~~~~~~----~---~-~i~~~~~sp~g~~--- 203 (378)
...|+.. |..+.+.+.|-- |++|+.||.|++||++.......+ + + ..+++..+++..+
T Consensus 1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence 5567777 999999997755 999999999999999984222211 1 2 3788888776654
Q ss_pred ------cccCCCCCc--eE---EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 204 ------DFSGSHNYN--RY---MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 204 ------~~~~~~~~~--~~---~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
.+|+..... .+ ..+-+.....+.+++|+|.--.||+|+.|.++.++-
T Consensus 1322 Gs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1322 GSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 333321111 01 111111334678999999998999998888877764
No 193
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.8e-13 Score=117.19 Aligned_cols=206 Identities=19% Similarity=0.250 Sum_probs=157.5
Q ss_pred CCCCceEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEE-----------------------------eeccCC--C----
Q 046394 44 PELGPYTLDFTSSGRYM-AAAGCKGYPYFYNRDGTELH-----------------------------CSKEHG--E---- 87 (378)
Q Consensus 44 ~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~-----------------------------~~~~~~--~---- 87 (378)
+....+.|..+|||+|+ |+|.....|++||+..-.+. .+..|. +
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 44667899999999975 57777889999995321110 011111 0
Q ss_pred ------eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------
Q 046394 88 ------VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------- 145 (378)
Q Consensus 88 ------~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------- 145 (378)
..++++ -|+.++....|+-+++..|..+..|....+.++++..++-..+|++|+.+|.
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 022333 3444555567888999999999999888899999999999999999999998
Q ss_pred ---------eeecCCC-----EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCC-----
Q 046394 146 ---------MLCHQGP-----VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDS----- 202 (378)
Q Consensus 146 ---------~~~h~~~-----v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~----- 202 (378)
+..|.+. |+++.|+.+|-.+++|+.+|.|.|||+++.+++..- ..+|..+.|-+.+.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE
Confidence 2334444 999999999999999999999999999998887665 36889999977633
Q ss_pred ------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEE-EEEc
Q 046394 203 ------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG-ILIP 251 (378)
Q Consensus 203 ------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~-~~~~ 251 (378)
..+|+..++.++..... ...++++++-|++-++.++.+++-+. ++++
T Consensus 290 S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 290 SMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 27899999988877764 55699999999999999999888664 4444
No 194
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.2e-13 Score=124.00 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=122.0
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNRDGTELHCSKEHGEV-LKLQF------L 94 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~ 94 (378)
..|.+||.. +.....+..+...+.+.+|+|||+.|+.++. ...|++||..+.....+....+. .++.| +
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 357889875 4445567677778999999999999988764 34699999765554455444444 56777 4
Q ss_pred EEEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEE
Q 046394 95 LASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSAL 156 (378)
Q Consensus 95 l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~ 156 (378)
+++.+.++ .|++||+.+++.. .+..+......++|+|||+.|+.++.. +. +..+......+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA 341 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 44555554 6999999888754 344454556678999999988776643 22 11122334468
Q ss_pred EEecCCCEEEEEECCC---eEEEEEcCCceeeeee--cCCceEEEEecCCCcccc
Q 046394 157 AFHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 157 ~~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~ 206 (378)
+|+|+|++|+..+.++ .|.+||+.++... .+ ......+.|+|||...++
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEE
Confidence 9999999988765443 6999999877654 33 234556788888876544
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=2.9e-12 Score=105.91 Aligned_cols=202 Identities=14% Similarity=0.184 Sum_probs=132.4
Q ss_pred eEEEeccceeeeeecccceeeEEeecCCCCc--eEEEEcCCCCEEE-EEeCC------CcEEEEe-CCCCeEEeeccCCC
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIMLPELGP--YTLDFTSSGRYMA-AAGCK------GYPYFYN-RDGTELHCSKEHGE 87 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v--~~~~~sp~g~~l~-~~~~d------g~i~iwd-~~~~~~~~~~~~~~ 87 (378)
.+.+..+.-.++|+....++......+.+++ .-|-|- .++|| +||.+ ..|.||| ....++..+.-...
T Consensus 19 cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~ 96 (346)
T KOG2111|consen 19 CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSE 96 (346)
T ss_pred eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccc
Confidence 3444444555666665554444444443432 233332 34554 44443 3799999 77888888887778
Q ss_pred eeEEEE---EEEEEeCCCeEEEEEcC-CCcEEEEEecCCCCeeEEEEcC--CCCEEEEEcC-CCe---------------
Q 046394 88 VLKLQF---LLASINKLGQLRYQNVT-MGEIVGNFWTGLGRTDVIRVNP--FNGVVSLGHS-GGT--------------- 145 (378)
Q Consensus 88 ~~~l~~---~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~-d~~--------------- 145 (378)
+.++.+ .+++. ..+.|+||... +.+.++.+.....+---++..| ...+||.-+. -|.
T Consensus 97 I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~ 175 (346)
T KOG2111|consen 97 IKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPS 175 (346)
T ss_pred eeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCce
Confidence 888877 44444 45789999987 4555565554332222223333 3334443222 222
Q ss_pred -eeecCCCEEEEEEecCCCEEEEEECCCe-EEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCc
Q 046394 146 -MLCHQGPVSALAFHPNGHLMATSGKDCK-IKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGY 223 (378)
Q Consensus 146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~ 223 (378)
+.+|...|.|++++-+|..+||+|..|+ |||||..+|+++..+. +|....
T Consensus 176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R----------------------------RG~d~A 227 (346)
T KOG2111|consen 176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR----------------------------RGVDRA 227 (346)
T ss_pred EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee----------------------------cCCchh
Confidence 6789999999999999999999999996 8899999988877651 111234
Q ss_pred ceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 224 QIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
.|++++|||++.+||++++.|++++|.
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 588999999999999999999888875
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=2.1e-13 Score=111.19 Aligned_cols=177 Identities=11% Similarity=0.164 Sum_probs=122.6
Q ss_pred cCCCCceEEEEcCCCC-----EEEEEeCCCcEEEEeCC--CCeE---Eeecc-----CCCe-eEEEE------EEEEEeC
Q 046394 43 LPELGPYTLDFTSSGR-----YMAAAGCKGYPYFYNRD--GTEL---HCSKE-----HGEV-LKLQF------LLASINK 100 (378)
Q Consensus 43 ~~~~~v~~~~~sp~g~-----~l~~~~~dg~i~iwd~~--~~~~---~~~~~-----~~~~-~~l~~------~l~s~~~ 100 (378)
.|..+++.+-|.|+.. +||+++ ..+++|... ...+ ..+.. +..+ ++..| ++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4678899999999863 566654 379999953 2221 12222 2234 78888 9999999
Q ss_pred CCeEEEEEcCCCcE--EEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC-CEEEEEECCCeEEEE
Q 046394 101 LGQLRYQNVTMGEI--VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG-HLMATSGKDCKIKIW 177 (378)
Q Consensus 101 d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iw 177 (378)
|.+..|||++++.. +.+- +.+|...|..++|...+ +.||++|.||+||+|
T Consensus 172 DTTCTiWdie~~~~~~vkTQ---------------------------LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQ---------------------------LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred cCeEEEEEEeeccccceeeE---------------------------EEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence 99999999998732 1111 23788899999998854 469999999999999
Q ss_pred EcCCceeeeee------cCCceEEEEecCCCc------------cccCC-CCCceEEEeeccCCcceeeeEEcCCCC-eE
Q 046394 178 DLRKYEVLQTL------PGHAKTLDFSRKDSG------------DFSGS-HNYNRYMGYSMVKGYQIGKVSFRPYED-VL 237 (378)
Q Consensus 178 d~~~~~~~~~~------~~~i~~~~~sp~g~~------------~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l 237 (378)
|+|..+....+ +.+...++|++.... .+-+. ....++..+++ |...|+.++|.|... .|
T Consensus 225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-HQASVNGIAWAPHSSSHI 303 (364)
T ss_pred EecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc-CcccccceEecCCCCcee
Confidence 99986554333 246678888876553 11122 23456667777 999999999999864 55
Q ss_pred EEecCCCeEEEE
Q 046394 238 GIGHSMGVSGIL 249 (378)
Q Consensus 238 ~~~~~~g~~~~~ 249 (378)
+++++|....+|
T Consensus 304 ctaGDD~qaliW 315 (364)
T KOG0290|consen 304 CTAGDDCQALIW 315 (364)
T ss_pred eecCCcceEEEE
Confidence 555555544444
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=7.2e-12 Score=104.05 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=155.2
Q ss_pred EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE----
Q 046394 20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM-AAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF---- 93 (378)
Q Consensus 20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~---- 93 (378)
.+.-++.|.+|++...+-.-.+.....++.+++|||||+.| .+...+-.|.||.+..+....+..... +..++|
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDG 145 (447)
T ss_pred eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCC
Confidence 34557899999999888888888888999999999999655 456668899999965443322222111 122333
Q ss_pred -E------------------------------------EEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE
Q 046394 94 -L------------------------------------LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV 136 (378)
Q Consensus 94 -~------------------------------------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 136 (378)
+ +--+-++..+-+||.--.-.+..+. -.-.+..+.|+|.+++
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQF 224 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccce
Confidence 0 0011233456677643222222222 1245788999999999
Q ss_pred EEEEcCCCe-----------------------------------------------------------------------
Q 046394 137 VSLGHSGGT----------------------------------------------------------------------- 145 (378)
Q Consensus 137 l~~~~~d~~----------------------------------------------------------------------- 145 (378)
|++|+.|+.
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 999999976
Q ss_pred ---------eeecCCCEEEEEEecCCCEEEEEEC--CCeEEEEEcCCceeeeee--cCCceEEEEecCCCc---------
Q 046394 146 ---------MLCHQGPVSALAFHPNGHLMATSGK--DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG--------- 203 (378)
Q Consensus 146 ---------~~~h~~~v~~~~~sp~g~~l~t~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~--------- 203 (378)
+....-.+.-++||+|..+++|-.. -+.+-+||++..++...+ ..+|....|.|....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR 384 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce
Confidence 1111234667899999999988764 347999999987776666 688999999996553
Q ss_pred -cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 204 -DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
.+|.......+.. .. .+..|..+.|..+|..++..+.|.+..-++
T Consensus 385 LY~W~psg~~~V~v-P~-~GF~i~~l~W~~~g~~i~l~~kDafc~a~v 430 (447)
T KOG4497|consen 385 LYFWAPSGPRVVGV-PK-KGFNIQKLQWLQPGEFIVLCGKDAFCVAIV 430 (447)
T ss_pred EEEEcCCCceEEec-CC-CCceeeeEEecCCCcEEEEEcCCceEEEEe
Confidence 4555444333322 23 567899999999999999999998654443
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=1.3e-13 Score=117.16 Aligned_cols=89 Identities=17% Similarity=0.394 Sum_probs=79.5
Q ss_pred EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------------------eeecCCCEEEEEEecCCCE
Q 046394 115 VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------MLCHQGPVSALAFHPNGHL 164 (378)
Q Consensus 115 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------~~~h~~~v~~~~~sp~g~~ 164 (378)
+..+..|...|+++.|+|+|.++|+|+++|. +.+|...|..++|+|++++
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 4456778999999999999999999999987 4567788999999999999
Q ss_pred EEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc
Q 046394 165 MATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG 203 (378)
Q Consensus 165 l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~ 203 (378)
+++++.|+++++||+..|.++..+ | ..+..++|.|-+++
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 999999999999999999999988 3 67889999987765
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.2e-12 Score=120.73 Aligned_cols=181 Identities=10% Similarity=0.070 Sum_probs=119.5
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF------L 94 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~------~ 94 (378)
..+.++|. ++.....+..+...+.+.+|||||+.|+..+.. ..|++||+.+.....+....+. ....| +
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 35667776 455555666777889999999999999887653 3599999765544444433333 66777 4
Q ss_pred EEEEeCCCeEEEEE--cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEE
Q 046394 95 LASINKLGQLRYQN--VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSAL 156 (378)
Q Consensus 95 l~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~ 156 (378)
+++.+.++...||. +..+. ...+..+........|+|||+.|+..+.. +. +..+.......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~ 333 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSP 333 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCce
Confidence 44667777766655 44444 44554455556778999999988766543 22 11112223457
Q ss_pred EEecCCCEEEEEECCC---eEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394 157 AFHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 157 ~~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~ 207 (378)
+|+|+|++|+..+.++ .|.+||+.++...... ......+.|+|||...++.
T Consensus 334 ~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 334 RISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYA 388 (427)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEE
Confidence 8999999998777654 6999999887653322 3345678899998765543
No 200
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=1.5e-13 Score=111.85 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=115.2
Q ss_pred eeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-Ce-EEeeccC-----CCe-eEEEE------EEEEEeCC
Q 046394 37 NQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TE-LHCSKEH-----GEV-LKLQF------LLASINKL 101 (378)
Q Consensus 37 ~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~-~~~~~~~-----~~~-~~l~~------~l~s~~~d 101 (378)
.+..|. .+-+.|.|+.|.|++..||+-. |..|.+|++.. .. +..+... ... ++-.| ..+....|
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d 192 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD 192 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC
Confidence 334444 3446899999999999888775 78999999532 22 2333221 111 44445 23333467
Q ss_pred CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCC-EEEEEECCCeEEEEEcC
Q 046394 102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGH-LMATSGKDCKIKIWDLR 180 (378)
Q Consensus 102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~-~l~t~~~d~~i~iwd~~ 180 (378)
+++..||+++......+.. +|...|..+.|+|+-+ +|+||+.||.|+|||.|
T Consensus 193 ~tl~~~D~RT~~~~~sI~d---------------------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIED---------------------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred CcEEEEEccchhhhcchhh---------------------------hhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 8999999998777666642 7888899999999765 48899999999999998
Q ss_pred CceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCeEEEEEcCC
Q 046394 181 KYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGVSGILIPGS 253 (378)
Q Consensus 181 ~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~~~~~~~~s 253 (378)
+ +..++..+.+ |.-.|.+|.|+|.- +++.+|+.|..+.++..++
T Consensus 246 ~----------------------------tk~pv~el~~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 246 K----------------------------TKFPVQELPG-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred C----------------------------CCccccccCC-CceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 7 5566777777 88899999999975 4666777777666665443
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.2e-12 Score=117.75 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=119.6
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEeeccCCC-eeEEEE-----EEE
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNRDGTELHCSKEHGE-VLKLQF-----LLA 96 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~~l~~-----~l~ 96 (378)
.|.++|...... ..+..+...+.+.+|||||+.|+..+. +..|++|+..+.....+....+ ...+.| .|+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 688888765543 445556678899999999998886543 4579999965544444433333 255677 333
Q ss_pred -EEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC-e---------------eeecCCCEEEEE
Q 046394 97 -SINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG-T---------------MLCHQGPVSALA 157 (378)
Q Consensus 97 -s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~---------------~~~h~~~v~~~~ 157 (378)
+.+.++ .|.+||+.++.... +..+...+....|+|||+.|+.++..+ . +..+.....+..
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD 337 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEE
Confidence 334444 58999998887654 334445678899999999887766543 2 222333455788
Q ss_pred EecCCCEEEEEECC---CeEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394 158 FHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 158 ~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~ 207 (378)
|+|+|++|+..+.+ ..|.+||+.++... .+ ........|+|||...++.
T Consensus 338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYS 391 (429)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEE
Confidence 99999998876654 36889999887643 33 2334568899999875554
No 202
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=3.2e-11 Score=110.80 Aligned_cols=173 Identities=23% Similarity=0.397 Sum_probs=142.3
Q ss_pred cceeeeeeccc-ceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCeEEeeccCCCe-eEEEE------
Q 046394 24 EAIAREVDILS-SRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD-GTELHCSKEHGEV-LKLQF------ 93 (378)
Q Consensus 24 ~~~i~~~d~~~-~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~-~~~~~~~~~~~~~-~~l~~------ 93 (378)
++.+.+||... ......+..|...|.+++|+|++.++++++. ++.+++|+.. +..+..+.+|... .+++|
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 78999999988 7888899999999999999999998888886 9999999954 5777888887765 88888
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEE
Q 046394 94 LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALA 157 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~ 157 (378)
.+++++.|+.|.+||...+..+. .+..|.... ...|+|++..+++++.++. +.+|...|.++.
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEE
Confidence 34444899999999998888877 677777665 4489999988888888887 236788999999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCceeeeee----cC-CceEEEE
Q 046394 158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PG-HAKTLDF 197 (378)
Q Consensus 158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~-~i~~~~~ 197 (378)
|+|++..+++++.|+.+.+||+.+....... +. .+..+.|
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 9998888888999999999999876654332 33 4777777
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.2e-12 Score=109.91 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=138.3
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC--CeeEEEE------EEEEEeCCCeEEEEEcCCC----cE
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG--EVLKLQF------LLASINKLGQLRYQNVTMG----EI 114 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~l~~------~l~s~~~d~~i~iwd~~~~----~~ 114 (378)
.+..++|++.-..+|++..|-.|++||.+......++... .+++++| .|+.|+..| |.+|..... ..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence 5678899986667889999999999996666666665544 4599999 677776654 889976421 11
Q ss_pred ----------EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------ee-ecCCCEEEEEEecCCCEEEEEE
Q 046394 115 ----------VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------ML-CHQGPVSALAFHPNGHLMATSG 169 (378)
Q Consensus 115 ----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~-~h~~~v~~~~~sp~g~~l~t~~ 169 (378)
+...++ ..+|+++.|++||..+++++.+.. +. ...+.+.-+.|||||.+|..++
T Consensus 179 ~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred cccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 111222 368999999999999999988766 22 3346788899999999999999
Q ss_pred CCCeEEEEEcC-Cceeeeee--cCCceEEEEecCCCccccCCCCCceEE------------------------Eee----
Q 046394 170 KDCKIKIWDLR-KYEVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYM------------------------GYS---- 218 (378)
Q Consensus 170 ~d~~i~iwd~~-~~~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~------------------------~~~---- 218 (378)
.|+..++|+.. +.....-. .+.|...+|+|+|.+.++.......+. .+.
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 99999999543 44443333 678999999999996333211111000 000
Q ss_pred -c---cCCcceeeeEEcCCCCeEEEecCCC
Q 046394 219 -M---VKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 219 -~---~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
. .-...+.+++|.|.|.+||+....+
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0 0135678999999999999877665
No 204
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.51 E-value=5.6e-13 Score=108.59 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=125.6
Q ss_pred ceeeEEEeccceeeeeeccccee-eEEeec-----CCCCceEEEEcC--CCCEEEEEeCCCcEEEEeC-CCCeEEee-cc
Q 046394 15 VEKTWRIKQEAIAREVDILSSRN-QYDIML-----PELGPYTLDFTS--SGRYMAAAGCKGYPYFYNR-DGTELHCS-KE 84 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~-~~~l~~-----~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~-~~~~~~~~-~~ 84 (378)
.++.+.+. +..|.+|++..+.. +..+.. |....++-+||| +|+.+++. .|+++..||. +..+...+ .+
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 44555555 67788999988876 333322 344567889998 78888877 4789999994 44444333 45
Q ss_pred CCCe-eEEEE------EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe----------
Q 046394 85 HGEV-LKLQF------LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT---------- 145 (378)
Q Consensus 85 ~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~---------- 145 (378)
|... ..+.| +|++|+.||.|+|||.+.- .++..+.+|...|+++.|+|.- ++|++|+.|..
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 6554 88888 9999999999999999864 5789999999999999999965 57777777765
Q ss_pred ---------------------------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcC
Q 046394 146 ---------------------------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLR 180 (378)
Q Consensus 146 ---------------------------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~ 180 (378)
+..|...|.+++||. +.=.||+-|.||.+.|=.+.
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 667899999999998 55568999999998875543
No 205
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.51 E-value=2.9e-12 Score=108.68 Aligned_cols=199 Identities=14% Similarity=0.150 Sum_probs=141.4
Q ss_pred CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe-CCCCeE
Q 046394 2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYN-RDGTEL 79 (378)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd-~~~~~~ 79 (378)
|-|.+...|++++.|.++.+|+...-.+. ..-.+.+..|.+|...|-.++|+|.. +.|++++.|..|.+|| -+|..+
T Consensus 89 w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal 167 (472)
T KOG0303|consen 89 WCPFNDCVIASGSEDTKVMVWQIPENGLT-RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL 167 (472)
T ss_pred cCccCCceeecCCCCceEEEEECCCcccc-cCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence 45677777777777777766663111110 11125677899999999999999976 6889999999999999 567777
Q ss_pred EeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-CeeEEEEcCCCCEEEEEcCCCe-------
Q 046394 80 HCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLG-RTDVIRVNPFNGVVSLGHSGGT------- 145 (378)
Q Consensus 80 ~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~------- 145 (378)
.++. |.+. .++.| +++|.+.|..|+|||.++++.+..-..|.+ ....+.|-.+|.++.+|...-.
T Consensus 168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLw 246 (472)
T KOG0303|consen 168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALW 246 (472)
T ss_pred eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceecc
Confidence 7777 8776 99999 999999999999999999999988877764 4556778888884444433222
Q ss_pred ------------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceee----eee--cCCceEEEEecCCC
Q 046394 146 ------------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVL----QTL--PGHAKTLDFSRKDS 202 (378)
Q Consensus 146 ------------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~----~~~--~~~i~~~~~sp~g~ 202 (378)
-...+..|.---|.|+.+.+..+| .|+.||.|.+..-.+. .+| ..+-..+.|-|..-
T Consensus 247 dp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 247 DPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred CcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc
Confidence 112234555566788888766555 7999999999876542 233 34556666666543
No 206
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5e-12 Score=117.05 Aligned_cols=176 Identities=11% Similarity=0.079 Sum_probs=116.3
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNRDGTELHCSKEHGEV-LKLQF------LL 95 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l 95 (378)
.|.++|.. +.....+..|...+.+.+|||||+.|+..+. +..|++||+.+.....+..+.+. ....| ++
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 67788874 4555677788789999999999999887764 46899999765555555555554 66777 44
Q ss_pred EEEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe---------------eeecCCCEEEEE
Q 046394 96 ASINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT---------------MLCHQGPVSALA 157 (378)
Q Consensus 96 ~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~---------------~~~h~~~v~~~~ 157 (378)
++.+.++. |++||+.++... .+..+........|+|||+.|+.++. ++. +..+.+.+....
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~ 340 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPV 340 (435)
T ss_pred EEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeE
Confidence 55555554 778898877653 45555556677899999988776654 332 222334456678
Q ss_pred EecCCCEEEEEECC---CeEEEEEcCCceeeeee--cCCceEEEEecCCCcc
Q 046394 158 FHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD 204 (378)
Q Consensus 158 ~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~ 204 (378)
|+|+|++|+..+.+ ..|.+||+..+. ...+ ...+..+.|+|||+..
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i 391 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVI 391 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEE
Confidence 99999998876643 257788875433 2222 2234455566665543
No 207
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.5e-11 Score=114.25 Aligned_cols=235 Identities=15% Similarity=0.071 Sum_probs=165.2
Q ss_pred eeeEEEeccceeeeeecccceeeEE---e-ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEeeccCC
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYD---I-MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----TELHCSKEHG 86 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~---l-~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~ 86 (378)
.....+--...+.+|+..+..+... . ..|...++|.++||+++++|+|..||.|.+|.--+ ...+.+.-|.
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 3344445566778888877552211 1 23666789999999999999999999999998322 2345667676
Q ss_pred Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394 87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------- 145 (378)
Q Consensus 87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------- 145 (378)
.. ++++| +|++||..+.+-+|.+.+++ .+-++.-.++|..+.+|||+.+.++...|..
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 54 99999 99999999999999999988 4555666789999999999999988888887
Q ss_pred --ee--------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--------c------CCceEEEEecCC
Q 046394 146 --ML--------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--------P------GHAKTLDFSRKD 201 (378)
Q Consensus 146 --~~--------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--------~------~~i~~~~~sp~g 201 (378)
+. ...+-.+.++++|.-+.++-.+..|.|.+||+-+...+..+ . -.+++++.+..|
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 11 12344677899997778899999999999999887766555 1 134666666666
Q ss_pred Cc--------------------cccCCCC----CceEEEeeccCCcceeeeEEcCCC-C-eEEEecCCCeEEEEEc
Q 046394 202 SG--------------------DFSGSHN----YNRYMGYSMVKGYQIGKVSFRPYE-D-VLGIGHSMGVSGILIP 251 (378)
Q Consensus 202 ~~--------------------~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~g-~-~l~~~~~~g~~~~~~~ 251 (378)
.+ .+|.... ..+......+|+..+....|.+.- . .+++++.||.+.+|+.
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence 53 3342211 112222333466666555554433 3 6788888887776654
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.7e-11 Score=103.10 Aligned_cols=225 Identities=15% Similarity=0.164 Sum_probs=145.8
Q ss_pred EeccceeeeeecccceeeEEeec-CCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----Ce----------EEeec
Q 046394 21 IKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRDG-----TE----------LHCSK 83 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~~-----~~----------~~~~~ 83 (378)
...|..|++||-.. ...-.++. ....|.|++|-|.+ ..|++|+..| |.+|..+. .. +....
T Consensus 116 a~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~p 193 (445)
T KOG2139|consen 116 ATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDP 193 (445)
T ss_pred hccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCC
Confidence 45678888888766 44444443 34679999999976 5677777664 99998321 11 12234
Q ss_pred cCCCeeEEEE-----EEEEEeC-CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394 84 EHGEVLKLQF-----LLASINK-LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------ 145 (378)
Q Consensus 84 ~~~~~~~l~~-----~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------ 145 (378)
+|..+++|.| .+++++. |..|.|||..+++.+.......+.++-+.|||||.+|++++-|+.
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~ 273 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK 273 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee
Confidence 5655699999 7777765 678999999999887766566788999999999999999999988
Q ss_pred --eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC----ce-----------eeeee------------cCCceEE
Q 046394 146 --MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRK----YE-----------VLQTL------------PGHAKTL 195 (378)
Q Consensus 146 --~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~----~~-----------~~~~~------------~~~i~~~ 195 (378)
.....+.|...+|+|.|.+|+.+. ..- +||.+.. +. ++..+ .+.+.++
T Consensus 274 erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l 351 (445)
T KOG2139|consen 274 ERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL 351 (445)
T ss_pred cceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence 122346899999999999865443 333 3333311 00 11111 3578999
Q ss_pred EEecCCCc------------------cccCCCCCceEEEe-ec-cCCcceeeeEEcC---CCCeEEEecCCCeEEEE
Q 046394 196 DFSRKDSG------------------DFSGSHNYNRYMGY-SM-VKGYQIGKVSFRP---YEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 196 ~~sp~g~~------------------~~~~~~~~~~~~~~-~~-~~~~~v~~~~~sp---~g~~l~~~~~~g~~~~~ 249 (378)
+|.|.|.+ ..|+.....++... .+ ..+....-++|+| +|.+|.++-+.|.+..+
T Consensus 352 awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 352 AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred eECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEee
Confidence 99999986 22333222222211 11 0122244566665 46677777777765443
No 209
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.50 E-value=4.4e-11 Score=109.89 Aligned_cols=209 Identities=22% Similarity=0.331 Sum_probs=155.2
Q ss_pred EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEeeccCCC--eeEEEE-------EEEE-EeCCCeEEEE
Q 046394 40 DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCSKEHGE--VLKLQF-------LLAS-INKLGQLRYQ 107 (378)
Q Consensus 40 ~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~--~~~l~~-------~l~s-~~~d~~i~iw 107 (378)
.+..|...+.++.+.+.+..++.++.|+.+.+|+.... .+..+..+.. ...+.+ .++. +..|+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 45678889999999999999999999999999995554 5666665332 222221 3344 3448999999
Q ss_pred EcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe--------------eeecCCCEEEEEEecCCC-EEEEEEC
Q 046394 108 NVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT--------------MLCHQGPVSALAFHPNGH-LMATSGK 170 (378)
Q Consensus 108 d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--------------~~~h~~~v~~~~~sp~g~-~l~t~~~ 170 (378)
|... ......+..|...+..++|+|++..+++++. ++. +.+|...|.+++|+|++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9988 7888888899999999999999998888875 555 556889999999999998 5566699
Q ss_pred CCeEEEEEcCCceeee-ee--cCCceEEEEecCCCc----------cccCCCCCce-EEEeeccCCcceeeeEEcCCCCe
Q 046394 171 DCKIKIWDLRKYEVLQ-TL--PGHAKTLDFSRKDSG----------DFSGSHNYNR-YMGYSMVKGYQIGKVSFRPYEDV 236 (378)
Q Consensus 171 d~~i~iwd~~~~~~~~-~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~g~~ 236 (378)
|+.|++||...+..+. .+ +.......|+|++.. .+|+...... +..... |...|.++.|+|++..
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-HSSSVLSVAFSPDGKL 298 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec-CCccEEEEEECCCCCE
Confidence 9999999998877777 45 322222268887732 5555443332 333334 6788999999998887
Q ss_pred EEEecCCCeEEEE
Q 046394 237 LGIGHSMGVSGIL 249 (378)
Q Consensus 237 l~~~~~~g~~~~~ 249 (378)
+++++.++.+.+|
T Consensus 299 ~~~~~~d~~~~~~ 311 (466)
T COG2319 299 LASGSSDGTVRLW 311 (466)
T ss_pred EEEeeCCCcEEEE
Confidence 7777777665666
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.47 E-value=7.7e-15 Score=134.84 Aligned_cols=211 Identities=13% Similarity=0.128 Sum_probs=154.2
Q ss_pred eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394 36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN 108 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd 108 (378)
+.+..|.+|..+|+|+.|...|.++++|+.|.-|+||. -++.++..+++|.+- +.++. ++++++.|..|++|-
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34556789999999999999999999999999999999 567888999999986 77777 899999999999999
Q ss_pred cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEEEC
Q 046394 109 VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATSGK 170 (378)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~~~ 170 (378)
+.++.++..+.+|.+.|++++|+|-. +.+.||+ -.....-+.++.|..++.-++|++.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999998865 5555665 0011234566777777778888888
Q ss_pred CCeEEEEEcCCcee--eee-e---cCCceEEEEec--CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeE-EEec
Q 046394 171 DCKIKIWDLRKYEV--LQT-L---PGHAKTLDFSR--KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL-GIGH 241 (378)
Q Consensus 171 d~~i~iwd~~~~~~--~~~-~---~~~i~~~~~sp--~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~ 241 (378)
|+.-..|.+..... ... + .+...++..+. +-...+|+...+...+...+ |...+..+.++|-+..+ .+++
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-cccceeeeeecCCCcHhhhhcc
Confidence 88888776643111 111 1 11111111111 11125677777777777767 88899999999988654 4667
Q ss_pred CCCeEEEEEc
Q 046394 242 SMGVSGILIP 251 (378)
Q Consensus 242 ~~g~~~~~~~ 251 (378)
.||...+|..
T Consensus 416 ~dgst~iwdi 425 (1113)
T KOG0644|consen 416 YDGSTIIWDI 425 (1113)
T ss_pred CCCceEeeec
Confidence 7776666643
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=4.1e-10 Score=100.94 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=142.6
Q ss_pred EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE------
Q 046394 21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF------ 93 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~------ 93 (378)
-..++.+.++|..+.+.+..+.........+.|+|||+++++++.||.|.++| .+++.+..+.....+.++++
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKY 91 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTE
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCE
Confidence 34579999999999999999987633334688999999999999999999999 56778888887777777777
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecC-------CCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecC
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTG-------LGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQ 150 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~ 150 (378)
+++++..++.+.++|..+.+++..+... ...+..+..+|....+++.-.+ +. .....
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g 171 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG 171 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--
T ss_pred EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc
Confidence 4555567899999999999998887643 2456788888888866655444 33 11223
Q ss_pred CCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCceeeeee-------cCCc-------eEEEEecCCC------------c
Q 046394 151 GPVSALAFHPNGHLMATS-GKDCKIKIWDLRKYEVLQTL-------PGHA-------KTLDFSRKDS------------G 203 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~~~~~~~-------~~~i-------~~~~~sp~g~------------~ 203 (378)
.......|+|+++|++.+ ..++.|-++|..+++.+..+ +.+. ....|...+. .
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v 251 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPV 251 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TT
T ss_pred ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcc
Confidence 455678999999987664 46779999999998876655 1111 1223433222 2
Q ss_pred cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394 204 DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIG 240 (378)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 240 (378)
.+++......+..... .+.+ .-+.-+|++++|.+.
T Consensus 252 ~v~d~~~wkvv~~I~~-~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 252 SVHDDYAWKVVKTIPT-QGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp T-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE
T ss_pred ccchhhcCeEEEEEEC-CCCc-ceeecCCCCccEEee
Confidence 4466677778877776 5555 567779999987666
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=9.8e-12 Score=105.46 Aligned_cols=163 Identities=16% Similarity=0.229 Sum_probs=126.0
Q ss_pred eccceeeeeecccce----eeEEeecCCCCceEEEEcCCCC-EEEEEeCC--CcEEEEeCCCCeEEeeccCC--------
Q 046394 22 KQEAIAREVDILSSR----NQYDIMLPELGPYTLDFTSSGR-YMAAAGCK--GYPYFYNRDGTELHCSKEHG-------- 86 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~----~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~~-------- 86 (378)
-.++.+.+|....+. +...+..+ .++..|.-+|... .+|+||.. ..+.|||..+. ...+.+..
T Consensus 122 ~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 122 VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGL 199 (412)
T ss_pred ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccc
Confidence 446788888887443 33445554 5677787777655 45668887 78999996543 33332211
Q ss_pred --Ce--eEEEE-------EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394 87 --EV--LKLQF-------LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------- 145 (378)
Q Consensus 87 --~~--~~l~~-------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------- 145 (378)
.+ +++.| .||++..-+.+++||.+.+ .++..|.....+++++...|+++++++|...+.
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 11 55666 8999999999999999865 588999888999999999999999999988776
Q ss_pred ------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394 146 ------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ 186 (378)
Q Consensus 146 ------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~ 186 (378)
+.+..+.|.++..+|.+.++++||-|..|||+|+.+.++++
T Consensus 280 kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 280 KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 55667899999999999999999999999999998855443
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=1.8e-12 Score=105.64 Aligned_cols=108 Identities=16% Similarity=0.280 Sum_probs=81.5
Q ss_pred cCCCEEEEEEecCCCEEEEEE--CCCeEEEEEcCCceeeeee-cCCceEEEEecCCCc-------------cccCCCCCc
Q 046394 149 HQGPVSALAFHPNGHLMATSG--KDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSG-------------DFSGSHNYN 212 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~-------------~~~~~~~~~ 212 (378)
..++|.+++|+|+|+.||++. .++.|.+||++ ++.+..+ ...++.+.|||+|.+ .+|+.....
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 345799999999999876553 56799999996 7777778 678899999999986 456666555
Q ss_pred eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394 213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF 266 (378)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~ 266 (378)
.+.... ...++.+.|+|||++|+++.... .-..|+.+++|+...-
T Consensus 137 ~i~~~~---~~~~t~~~WsPdGr~~~ta~t~~------r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 137 KISTFE---HSDATDVEWSPDGRYLATATTSP------RLRVDNGFKIWSFQGR 181 (194)
T ss_pred Eeeccc---cCcEEEEEEcCCCCEEEEEEecc------ceeccccEEEEEecCe
Confidence 655543 23478999999999999887653 1235788999986543
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.3e-12 Score=111.79 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=121.6
Q ss_pred eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC--e-eEEE
Q 046394 17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE--V-LKLQ 92 (378)
Q Consensus 17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~--~-~~l~ 92 (378)
..-.+..|+.+++|+......+.....|...|.++.|||||..|++-+.| ..+||+ .+|..+........ . ..+.
T Consensus 158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cR 236 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCR 236 (398)
T ss_pred EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhce
Confidence 33444568999999988888888888999999999999999999999999 899999 56655544432111 1 3344
Q ss_pred E----------EEEEEeCCCeEEEEEcCCCcE-----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394 93 F----------LLASINKLGQLRYQNVTMGEI-----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------ 145 (378)
Q Consensus 93 ~----------~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------ 145 (378)
| +++....-+.|..||+....- ..+.......|++++.+++|++++.|+.+|.
T Consensus 237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence 4 333334455677766543211 1122223457999999999999999999998
Q ss_pred ---eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394 146 ---MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR 180 (378)
Q Consensus 146 ---~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~ 180 (378)
-..|...|+.+.|+|+.+++++.+.|..+.|.-+.
T Consensus 317 ~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 317 QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 34688999999999999999999999988887664
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.44 E-value=1.8e-11 Score=101.35 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=127.8
Q ss_pred eccceeeeeecccce---eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCC---eEEeeccCCC-eeEEEE
Q 046394 22 KQEAIAREVDILSSR---NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGT---ELHCSKEHGE-VLKLQF 93 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~---~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~---~~~~~~~~~~-~~~l~~ 93 (378)
.+...++||.....+ ..+++..|+..|++++|+|.++.|++|+.|..-+||.. ++. +.-.+..+.. .+++.|
T Consensus 29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~W 108 (361)
T KOG1523|consen 29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKW 108 (361)
T ss_pred cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEee
Confidence 445678888876654 67889999999999999999999999999999999994 543 2334444454 499999
Q ss_pred -----EEEEEeCCCeEEEEEcCCCcEEE----EEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------
Q 046394 94 -----LLASINKLGQLRYQNVTMGEIVG----NFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------- 145 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------- 145 (378)
.||+|+....|.||=++..+--. .-..+...|+++.|+|++-++++|+.|+.
T Consensus 109 sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~p 188 (361)
T KOG1523|consen 109 SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTP 188 (361)
T ss_pred cCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCC
Confidence 99999999999998876544321 12234578999999999999999999987
Q ss_pred -------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 146 -------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 146 -------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
+....+.|..+.|+|+|+.|+-.+.|.++.+=|...
T Consensus 189 Wgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 189 WGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred CccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 234567899999999999999999999999888754
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-11 Score=116.43 Aligned_cols=230 Identities=13% Similarity=0.090 Sum_probs=141.6
Q ss_pred eecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC---CCC-----eEEeec-cCCCeeEEEE-----E
Q 046394 30 VDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR---DGT-----ELHCSK-EHGEVLKLQF-----L 94 (378)
Q Consensus 30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~---~~~-----~~~~~~-~~~~~~~l~~-----~ 94 (378)
|+. .|..+..+..|...|..++.++.. .++++||.||+|++||. .+. ...++. ..+.+..+.. .
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 443 567788899999999988888765 89999999999999993 222 112222 2222233333 8
Q ss_pred EEEEeCCCeEEEEEcCCC--c-----EEEEEecC-CCCe-eEEEEcCCC-C-EEEEEcCCCe----------------ee
Q 046394 95 LASINKLGQLRYQNVTMG--E-----IVGNFWTG-LGRT-DVIRVNPFN-G-VVSLGHSGGT----------------ML 147 (378)
Q Consensus 95 l~s~~~d~~i~iwd~~~~--~-----~~~~~~~~-~~~v-~~~~~s~~~-~-~l~~~~~d~~----------------~~ 147 (378)
+|.++.||.|.+.++... . +......+ .+.+ ...+|.... . .++.+...+. ..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 1 11111111 2233 333444432 3 5555555554 23
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCC---------------ccccCC
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDS---------------GDFSGS 208 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~---------------~~~~~~ 208 (378)
...|.|++++.+|.++++++|+..|.+.+||+|-+.++... +.++..+..+|-.. ..+|+.
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 34578999999999999999999999999999998888777 35566665555332 344554
Q ss_pred CCCceEEEeeccCCcceeeeEE-cCCC----------CeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394 209 HNYNRYMGYSMVKGYQIGKVSF-RPYE----------DVLGIGHSMGVSGILIPGSGEPNFDSWVANP 265 (378)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~-sp~g----------~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~ 265 (378)
..+..-.++.. . ..+..+.+ .|.. .+.+..... .+..+|+.|..|+.||...
T Consensus 1273 ~~g~~~~vl~~-s-~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~---~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1273 ETGLRQTVLWA-S-DGAPILSYALPSNDARKPDSLAGISCGVCEKN---GFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ccCcceEEEEc-C-CCCcchhhhcccccCCCCCcccceeeecccCC---ceeeecCCccceeeccCCC
Confidence 44433333322 1 11111211 1221 111222222 4567888999999998643
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=9.1e-11 Score=99.70 Aligned_cols=186 Identities=9% Similarity=-0.017 Sum_probs=128.6
Q ss_pred CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCeEEeeccCCCeeEEEE------EEEEEeCC--CeEEEEEcC
Q 046394 44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-----GTELHCSKEHGEVLKLQF------LLASINKL--GQLRYQNVT 110 (378)
Q Consensus 44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~l~~------~l~s~~~d--~~i~iwd~~ 110 (378)
....|..++.. || .|++|-.+|.+.+|... ..++..+..+.+...+.- ++++||.. ..+.+||+.
T Consensus 104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 33455555554 23 68888899999999954 445555655555433333 77889988 889999999
Q ss_pred CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC--CCEEEEEECCCeEEEEEcCCc-eeeee
Q 046394 111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN--GHLMATSGKDCKIKIWDLRKY-EVLQT 187 (378)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~--g~~l~t~~~d~~i~iwd~~~~-~~~~~ 187 (378)
+.+.+.+-..-...-..+ .-.-+++++.|-|. ...||+++.-+.|++||.+.+ +++..
T Consensus 182 ~~~qiw~aKNvpnD~L~L-------------------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGL-------------------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred cceeeeeccCCCCccccc-------------------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 886555443222111111 12345678889886 788999999999999999875 45666
Q ss_pred e---cCCceEEEEecCCCc----------cccCCCCCceEEE-eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 188 L---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMG-YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 188 ~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
+ ..+++++...|+|.+ ..++.+.+..... +.+ -.+.|.++..+|.+++||+++-|.+++++..
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg-~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG-ITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC-ccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 6 578999999998885 3445555555544 555 6677999999999988888877776655543
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.6e-11 Score=112.00 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=111.3
Q ss_pred ceeeeeeccccee--eEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCeEEeeccCCCe-eEEEE-----
Q 046394 25 AIAREVDILSSRN--QYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFY--NRDGTELHCSKEHGEV-LKLQF----- 93 (378)
Q Consensus 25 ~~i~~~d~~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~-~~l~~----- 93 (378)
..|.+||+.+++. +..+.+ ...+++|+|||+.|++++ .+|.+.|| |..+..+..+..+... ....|
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred cEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCC
Confidence 4689999988754 222333 344789999999888765 57765555 6666666667666655 77888
Q ss_pred -EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEe
Q 046394 94 -LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFH 159 (378)
Q Consensus 94 -~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~s 159 (378)
+++++..++...||++... .....+ .+.. .++.|+|+|+.|+.++.++. +.. .....++.|+
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~~~~~~~~s 380 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TFLDESPSIS 380 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CCCCCCceEC
Confidence 4445556788888877532 222223 3333 45789999999988776655 111 1123567899
Q ss_pred cCCCEEEEEECCCeEEEEEcC--Cceeeeee---cCCceEEEEec
Q 046394 160 PNGHLMATSGKDCKIKIWDLR--KYEVLQTL---PGHAKTLDFSR 199 (378)
Q Consensus 160 p~g~~l~t~~~d~~i~iwd~~--~~~~~~~~---~~~i~~~~~sp 199 (378)
|+|++|+.++.++.+.+|++. +|..+..+ .+.+..++|||
T Consensus 381 PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 999999999999988888763 45555555 23455566665
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.39 E-value=4.4e-11 Score=97.43 Aligned_cols=58 Identities=19% Similarity=0.456 Sum_probs=49.0
Q ss_pred CCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394 150 QGPVSALAFHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~ 207 (378)
...+..+.|+|+|++|++++.+ |.|.+||+++.+.+.++ +..++.++|||||++.+..
T Consensus 100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence 4566789999999999998754 56999999999999888 7778999999999986654
No 220
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2.3e-10 Score=91.45 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=103.0
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
.|++|-..|..+-|++++.|+.++-|| .+|...+.+++|++. .++.- .+++|+.||++++||+++++.+..+.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 578999999888888888999999999 577888899999986 66655 89999999999999999999998886
Q ss_pred cCCCCeeEEEEcCCCCEEEEEcCCCeeeec-CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEE
Q 046394 120 TGLGRTDVIRVNPFNGVVSLGHSGGTMLCH-QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLD 196 (378)
Q Consensus 120 ~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h-~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~ 196 (378)
....+ +++ ..| ...|.+++.+. .++++|+ ...+.+|.+++.++...+ ++++..+.
T Consensus 196 ~yk~~-~~l------------------Rp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~ 253 (325)
T KOG0649|consen 196 PYKNP-NLL------------------RPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVD 253 (325)
T ss_pred cccCh-hhc------------------CcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCceEEEecccceeEee
Confidence 53221 111 122 23466776654 4777665 556999999999988888 78888888
Q ss_pred EecC
Q 046394 197 FSRK 200 (378)
Q Consensus 197 ~sp~ 200 (378)
|..|
T Consensus 254 F~~d 257 (325)
T KOG0649|consen 254 FVDD 257 (325)
T ss_pred eecc
Confidence 8665
No 221
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=2.1e-10 Score=106.08 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=120.7
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF------LL 95 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l 95 (378)
.|.++|... .....+..+...+.+.+|||||++|+.++.. ..|++||..+.....+..+.+. .++.| ++
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 577777753 3345566666678899999999999887653 4799999655444444444443 56777 44
Q ss_pred EEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC-e---------------eeecCCCEEEEE
Q 046394 96 ASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG-T---------------MLCHQGPVSALA 157 (378)
Q Consensus 96 ~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~---------------~~~h~~~v~~~~ 157 (378)
++.+.++ .|++||+.++... .+..+........|+|+|+.|+..+..+ . +..+...+..+.
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~ 328 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPS 328 (417)
T ss_pred EEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeE
Confidence 4444443 5889999877643 3334444556789999999877655432 2 222445566789
Q ss_pred EecCCCEEEEEECCC---eEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394 158 FHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 158 ~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~ 207 (378)
|+|+|++++.++.++ .|.+||+.++...... ........|+|||...++.
T Consensus 329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYA 382 (417)
T ss_pred ECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEE
Confidence 999999999888776 7999999875442222 3344567899998765543
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=1.5e-09 Score=90.08 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=116.9
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCCCeeEEEE--------
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHGEVLKLQF-------- 93 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~l~~-------- 93 (378)
.+.+-|||-....++.++... .+|.++.++++ .|++.- .+.|+||.... +.++.+.....+..++-
T Consensus 74 pNkviIWDD~k~~~i~el~f~-~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFN-SEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred CceEEEEecccCcEEEEEEec-cceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 356788997777788888775 88999999976 566654 56899999543 34455544333311221
Q ss_pred EEEE-EeCCCeEEEEEcCCCcE--EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----eee-------------cCCCE
Q 046394 94 LLAS-INKLGQLRYQNVTMGEI--VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----MLC-------------HQGPV 153 (378)
Q Consensus 94 ~l~s-~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----~~~-------------h~~~v 153 (378)
+||. |-.-|.|.|-|+..-.. ...+..|.+.|.|++.+.+|..+|+++..|+ +.. ....|
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 4443 34569999999976554 4677889999999999999999999999999 111 23568
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
.+|+|||++.+||++|..|+|.||.++..
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998763
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.34 E-value=1.6e-11 Score=108.17 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEcCCCe------------eee--cCCCEEEEEEec
Q 046394 121 GLGRTDVIRVNPFNGVVSLGHSGGT------------MLC--HQGPVSALAFHP 160 (378)
Q Consensus 121 ~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~--h~~~v~~~~~sp 160 (378)
.-+...|++|||||++|++|+.|.. -.+ |+.+|..|+|.|
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 3467889999999999999988876 111 556677777765
No 224
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.32 E-value=1.2e-09 Score=97.75 Aligned_cols=184 Identities=8% Similarity=0.044 Sum_probs=118.8
Q ss_pred eccceeeeeecc-ccee--eEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC--C---CeEEeeccCCCeeEEE
Q 046394 22 KQEAIAREVDIL-SSRN--QYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD--G---TELHCSKEHGEVLKLQ 92 (378)
Q Consensus 22 ~~~~~i~~~d~~-~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~--~---~~~~~~~~~~~~~~l~ 92 (378)
..++.|.+|++. ++.. ..... ....+..++|+|+|++|++++. ++.|.+|+.+ + ..+..+.+...+..++
T Consensus 54 ~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 132 (330)
T PRK11028 54 RPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSAN 132 (330)
T ss_pred CCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeE
Confidence 346778888886 3322 12222 2346789999999999888765 8899999853 2 2233333434456666
Q ss_pred E------EEEEEeCCCeEEEEEcCCCcEEE-----EEe-cCCCCeeEEEEcCCCCEEEEEcC-CCe-----eee------
Q 046394 93 F------LLASINKLGQLRYQNVTMGEIVG-----NFW-TGLGRTDVIRVNPFNGVVSLGHS-GGT-----MLC------ 148 (378)
Q Consensus 93 ~------~l~s~~~d~~i~iwd~~~~~~~~-----~~~-~~~~~v~~~~~s~~~~~l~~~~~-d~~-----~~~------ 148 (378)
+ ++++...++.|.+||+.+...+. ... .....+..++|+|++++++++.. ++. +..
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 6 55666778999999997633221 111 12345678999999999988876 333 110
Q ss_pred -------c------CCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCce----eeeee--cCCceEEEEecCCCcccc
Q 046394 149 -------H------QGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYE----VLQTL--PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 149 -------h------~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~----~~~~~--~~~i~~~~~sp~g~~~~~ 206 (378)
+ ......+.++|+|++++++. .+++|.+|++.... .+..+ ...+..+.|+|||++.+.
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence 0 01122588999999988875 47899999996532 22222 235678999999987544
No 225
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=9e-10 Score=102.03 Aligned_cols=179 Identities=9% Similarity=0.015 Sum_probs=111.8
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KG--YPYFYNRDGTELHCSKEHGEV-LKLQF------LL 95 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l 95 (378)
.+.++|..... ...+..+...+.+..|||||+.|+..+. ++ .|++||..+.....+....+. ....| ++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 55666764443 3455555678889999999998887654 33 588889655444444333333 55677 44
Q ss_pred EEEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEEE
Q 046394 96 ASINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSALA 157 (378)
Q Consensus 96 ~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~~ 157 (378)
++.+.++. |.+||+.+++.. .+..+.......+|+|||+.|+..+.. +. +..........+
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~ 356 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGS 356 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCee
Confidence 45555664 888898877654 344444566778999999987766543 32 111122234568
Q ss_pred EecCCCEEEEEECC-C--eEEEEEcCCceeeeee-cCCceEEEEecCCCcccc
Q 046394 158 FHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 158 ~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~ 206 (378)
|+|||++|+..+.+ + .|.++|+.++...... ........|+|||...++
T Consensus 357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 357 ITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIY 409 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEE
Confidence 99999998776653 3 4666788777642211 222345579999876544
No 226
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=99.81 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=103.1
Q ss_pred EEeccceeeeeecccceeeE----------EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeE-Ee--ec
Q 046394 20 RIKQEAIAREVDILSSRNQY----------DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---GTEL-HC--SK 83 (378)
Q Consensus 20 ~~~~~~~i~~~d~~~~~~~~----------~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~-~~--~~ 83 (378)
....++.+-+||+.++.++. ....|...|.++.|.+.-..=++|+.+..+..|+++ +... .. --
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 34567889999999985443 345688899999998766666788888889999843 2211 11 12
Q ss_pred cCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEE
Q 046394 84 EHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAF 158 (378)
Q Consensus 84 ~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~ 158 (378)
.|.++..+.. ++||+|.|+.|+||..++.+++..+. .|.+.|++++|
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk----------------------------yHsagvn~vAf 301 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK----------------------------YHSAGVNAVAF 301 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh----------------------------hhhcceeEEEe
Confidence 3445544555 99999999999999999999988876 57788999999
Q ss_pred ecCCCEEEEEECCCeEEEEEc
Q 046394 159 HPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 159 sp~g~~l~t~~~d~~i~iwd~ 179 (378)
+|+...+|++|.|+.|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999986
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=4.4e-10 Score=104.14 Aligned_cols=174 Identities=11% Similarity=0.081 Sum_probs=115.8
Q ss_pred cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEe---CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394 68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASIN---KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS 138 (378)
Q Consensus 68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 138 (378)
.|.+||.+|.....+..+... .+..| .|+..+ .+..|.+||+.+++.. .+....+.+...+|+|||+.|+
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEE
Confidence 789999888887777777654 88888 444443 3568999999888754 3444556778899999998765
Q ss_pred -EEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CC--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394 139 -LGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DC--KIKIWDLRKYEVLQTL--PGHAKTLDF 197 (378)
Q Consensus 139 -~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~~ 197 (378)
+.+.++. +..+.+.....+|+|||+.|+..+. +| .|.+||+..+...... ...+..+.|
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~ 341 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVW 341 (435)
T ss_pred EEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence 4444443 3344555677899999999887764 33 6888898766543322 355677899
Q ss_pred ecCCCccccCCCCC--ceEEEeec--------cCCcceeeeEEcCCCCeEEEecC
Q 046394 198 SRKDSGDFSGSHNY--NRYMGYSM--------VKGYQIGKVSFRPYEDVLGIGHS 242 (378)
Q Consensus 198 sp~g~~~~~~~~~~--~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~ 242 (378)
||||...++..... ..+..+.. .....+..+.|+|||+.|+....
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEc
Confidence 99998754422111 11111111 01224678899999998876554
No 228
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=7.7e-10 Score=102.59 Aligned_cols=179 Identities=8% Similarity=0.043 Sum_probs=115.8
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF------LL 95 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l 95 (378)
.+.++|...+. ...+..+...+.+..|||||+.|+..+.+ ..|.+||..+.....+....+. ....| ++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 46677776443 45566666788999999999998876543 3689999765544444443333 45677 33
Q ss_pred EEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEEE
Q 046394 96 ASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSALA 157 (378)
Q Consensus 96 ~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~~ 157 (378)
++.+.++ .|.+||+.++... .+..+........|+|||+.|+..+.. +. +...........
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR 337 (430)
T ss_pred EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence 3454444 6888899887654 344455556678999999877665543 32 111111223468
Q ss_pred EecCCCEEEEEECC-C--eEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394 158 FHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 158 ~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~ 207 (378)
|+|+|++|+..+.+ + .|.+||+.++.. ..+ ........|+|||...++.
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~ 391 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYA 391 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEE
Confidence 99999998877653 3 588899988754 333 2233456899998765554
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.6e-10 Score=98.76 Aligned_cols=244 Identities=13% Similarity=0.169 Sum_probs=148.4
Q ss_pred CeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-----C-----CCcEEEEeCCCC
Q 046394 8 GYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-----C-----KGYPYFYNRDGT 77 (378)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-----~-----dg~i~iwd~~~~ 77 (378)
...+-....+.+.+..++.+.|++..+...+...... .++.+.|||-|.+|.+-- . .-.+.+|+....
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~ 115 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG 115 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence 3444455677888899999999999888755554443 789999999999887531 1 235779984432
Q ss_pred eE-EeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE------------------------
Q 046394 78 EL-HCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV------------------------ 127 (378)
Q Consensus 78 ~~-~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~------------------------ 127 (378)
.. ..+...... .++.| .++.=-..+.+.+|++.+.+.+.. ..+...++.
T Consensus 116 ~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 116 VQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred eehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 22 222222111 44555 111111224566666544221110 111222333
Q ss_pred ----------------------------EEEcCCCC-EEEEEc--CCCe--------------ee--------ecCCCEE
Q 046394 128 ----------------------------IRVNPFNG-VVSLGH--SGGT--------------ML--------CHQGPVS 154 (378)
Q Consensus 128 ----------------------------~~~s~~~~-~l~~~~--~d~~--------------~~--------~h~~~v~ 154 (378)
+.|++-|+ +|+.++ -|.+ +. .-.++|.
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVh 274 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVH 274 (566)
T ss_pred EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCce
Confidence 34444443 222111 1221 11 1268999
Q ss_pred EEEEecCCCEEEEEE--CCCeEEEEEcCCceeeeee-cCCceEEEEecCCCc-------------cccCCCCCceEEEee
Q 046394 155 ALAFHPNGHLMATSG--KDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSG-------------DFSGSHNYNRYMGYS 218 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~-------------~~~~~~~~~~~~~~~ 218 (378)
++.|+|+|+-|+.+- .-..+.|||++ +.++..+ .++-+++-|+|.|.+ .+|+......+..+.
T Consensus 275 dv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred EEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 999999998876654 45689999986 6788888 688899999998875 677777777776665
Q ss_pred ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394 219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN 264 (378)
Q Consensus 219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~ 264 (378)
. ..-+-+.|+|||+++++++..-..+ -|+.++||+..
T Consensus 354 a---~~tt~~eW~PdGe~flTATTaPRlr------vdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 A---ANTTVFEWSPDGEYFLTATTAPRLR------VDNGIKIWHYT 390 (566)
T ss_pred c---CCceEEEEcCCCcEEEEEeccccEE------ecCCeEEEEec
Confidence 4 2345688999999998887664222 14556666543
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=6.1e-10 Score=102.76 Aligned_cols=177 Identities=11% Similarity=0.035 Sum_probs=110.5
Q ss_pred CcEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEE
Q 046394 67 GYPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVV 137 (378)
Q Consensus 67 g~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 137 (378)
..|.++|.+|.....+..+... .+.+| .|+..+. ...|.+||+.+++... +....+.+.+.+|+|||+.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 3688888888776666666554 77888 4554443 3469999999887643 33344566789999999877
Q ss_pred EE-EcCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CCeEEEEEc--CCceeeee-e-cCCceEEE
Q 046394 138 SL-GHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DCKIKIWDL--RKYEVLQT-L-PGHAKTLD 196 (378)
Q Consensus 138 ~~-~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~~i~iwd~--~~~~~~~~-~-~~~i~~~~ 196 (378)
+. .+.++. +..+.+......|+|||++|+..+. ++...||.+ .++..... + .......+
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~ 334 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPR 334 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceE
Confidence 64 455554 2234445667899999999886664 455566654 44443222 2 33455689
Q ss_pred EecCCCccccCCCCC--ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCC
Q 046394 197 FSRKDSGDFSGSHNY--NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 197 ~sp~g~~~~~~~~~~--~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
|||||.+.++..... ..+..+... .........|+|||+.|+.+..++
T Consensus 335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 335 ISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecC
Confidence 999998754432211 112222110 112346789999999888776544
No 231
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.27 E-value=3.4e-10 Score=104.76 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=131.5
Q ss_pred eeeEEEeccceeeeeeccccee--eEE----eecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEeCCCCe-------EE
Q 046394 16 EKTWRIKQEAIAREVDILSSRN--QYD----IMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYNRDGTE-------LH 80 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~--~~~----l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd~~~~~-------~~ 80 (378)
...+.+..+|.|-+||+..+.. ... ...|...++.+.|..+.. -+++++.||.|..|+.+.-. ..
T Consensus 256 ~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~ 335 (555)
T KOG1587|consen 256 NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE 335 (555)
T ss_pred ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc
Confidence 3344566789999999988766 333 345788899999976554 49999999999999843211 11
Q ss_pred e-------eccCCCeeEEEE------EEEEEeCCCeEEEEEcC---CC-----cEEEEEecCCCCeeEEEEcCCCCE-EE
Q 046394 81 C-------SKEHGEVLKLQF------LLASINKLGQLRYQNVT---MG-----EIVGNFWTGLGRTDVIRVNPFNGV-VS 138 (378)
Q Consensus 81 ~-------~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~s~~~~~-l~ 138 (378)
. ...+.+++++.| .|+.|+..|.|.--+-. .+ +....+..|.++|.++.++|-+.. |.
T Consensus 336 ~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl 415 (555)
T KOG1587|consen 336 SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL 415 (555)
T ss_pred cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceee
Confidence 1 112223488888 89999999998773322 21 224456678899999999999864 44
Q ss_pred EEcCCCe--------------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCce--eeeee--c-CCceEEEEe
Q 046394 139 LGHSGGT--------------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYE--VLQTL--P-GHAKTLDFS 198 (378)
Q Consensus 139 ~~~~d~~--------------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~--~~~~~--~-~~i~~~~~s 198 (378)
++++.+. +..+...|++++|||. ...|+++..||.|.|||+.... ++.+. . ...+.+.|+
T Consensus 416 s~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 416 SVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS 495 (555)
T ss_pred eeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecC
Confidence 4443333 4456667999999994 4678899999999999997533 33333 2 445667777
Q ss_pred cCCCccccC
Q 046394 199 RKDSGDFSG 207 (378)
Q Consensus 199 p~g~~~~~~ 207 (378)
++|+....+
T Consensus 496 ~~g~~lavG 504 (555)
T KOG1587|consen 496 PNGKLLAVG 504 (555)
T ss_pred CCCcEEEEe
Confidence 777654443
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.2e-11 Score=107.73 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=122.4
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-ccCCC-eeEEEE-------EEEEEeCCCeEEEE
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-KEHGE-VLKLQF-------LLASINKLGQLRYQ 107 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~~~~~-~~~l~~-------~l~s~~~d~~i~iw 107 (378)
...|..|.+.|..+.|...|..|++|+.|..|.+|| ..+.....+ .+|.. +....| -+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 455788999999999999999999999999999999 666665554 34543 233335 78999999999987
Q ss_pred EcCC-CcE--EEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe-----------------eeecCC---CEEEEEEecC-C
Q 046394 108 NVTM-GEI--VGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT-----------------MLCHQG---PVSALAFHPN-G 162 (378)
Q Consensus 108 d~~~-~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~-----------------~~~h~~---~v~~~~~sp~-g 162 (378)
.+.. +.+ ...+..|.++|..++.-|+.. .|.+++.|+. -..+.. ...+++.+|- .
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7653 322 334556889999999999884 6788888887 112222 4678888894 4
Q ss_pred CEEEEEECCCeEEEEEcCCce------eeeee---------cCCceEEEEecCCC
Q 046394 163 HLMATSGKDCKIKIWDLRKYE------VLQTL---------PGHAKTLDFSRKDS 202 (378)
Q Consensus 163 ~~l~t~~~d~~i~iwd~~~~~------~~~~~---------~~~i~~~~~sp~g~ 202 (378)
+.+++++.|..+++||.+... .+.++ +..|++++|+.+|.
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 579999999999999987532 12333 34689999997664
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.2e-09 Score=100.87 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=110.7
Q ss_pred cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEe---CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394 68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASIN---KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS 138 (378)
Q Consensus 68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 138 (378)
.|.+||.+|.....+..+... ....| .|+..+ .+..|.+||+.+++.... ....+.+..+.|+|||+.|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEE
Confidence 699999888766666555544 77888 444332 345799999988865332 22334456789999999777
Q ss_pred EE-cCCCe---------------eeecCCCEEEEEEecCCCEEEEEECC-C--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394 139 LG-HSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL--PGHAKTLDF 197 (378)
Q Consensus 139 ~~-~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~ 197 (378)
.. +.++. +..+...+....|+|||+.|+.++.+ + .|.++|+.++...... ......+.|
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV 338 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence 54 33442 22334567789999999998877754 3 4555577666543222 345567899
Q ss_pred ecCCCccccCCCCC--ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCCe
Q 046394 198 SRKDSGDFSGSHNY--NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMGV 245 (378)
Q Consensus 198 sp~g~~~~~~~~~~--~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g~ 245 (378)
||||.+.++..... ..+..+... .........|+|||++|+.++.++.
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 99998744321111 111111110 1112346789999999988887764
No 234
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.26 E-value=5.1e-09 Score=86.19 Aligned_cols=176 Identities=17% Similarity=0.153 Sum_probs=120.1
Q ss_pred CCceeeEEEeccceeeeeecccce--eeEEeecCCC---CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC-
Q 046394 13 EGVEKTWRIKQEAIAREVDILSSR--NQYDIMLPEL---GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG- 86 (378)
Q Consensus 13 ~~~~~~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~---~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 86 (378)
.+..+.+.+-+|..|.+-...+.- .+.....+.+ .-..++||||+..||.+...|+|+++|+.|..+..+....
T Consensus 6 ~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~ 85 (282)
T PF15492_consen 6 SSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS 85 (282)
T ss_pred cCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc
Confidence 345566677777777665543331 1122222222 2358999999999999999999999998887776654322
Q ss_pred ------C-eeEEEE-----------EEEEEeCCCeEEEEEcCC-----CcEEEEEec---CCCCeeEEEEcCCCCEEEEE
Q 046394 87 ------E-VLKLQF-----------LLASINKLGQLRYQNVTM-----GEIVGNFWT---GLGRTDVIRVNPFNGVVSLG 140 (378)
Q Consensus 87 ------~-~~~l~~-----------~l~s~~~d~~i~iwd~~~-----~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~ 140 (378)
. +..|.| .|+.-..+|.++-|-+.. .+...+|.. +...|.++.|+|.-++|++|
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVg 165 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVG 165 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEe
Confidence 1 244555 455556777777666532 223334332 46789999999999988887
Q ss_pred cCCCe--------------------------------------------------e----eecCCCEEEEEEecCCCEEE
Q 046394 141 HSGGT--------------------------------------------------M----LCHQGPVSALAFHPNGHLMA 166 (378)
Q Consensus 141 ~~d~~--------------------------------------------------~----~~h~~~v~~~~~sp~g~~l~ 166 (378)
+.... + ......|..|.+||||..||
T Consensus 166 G~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 166 GCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred ccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE
Confidence 64322 1 11246788999999999999
Q ss_pred EEECCCeEEEEEcCCceeeeee
Q 046394 167 TSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 167 t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
+...+|.|.+|++.+..+....
T Consensus 246 ~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 246 CIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred EEEcCCeEEEEecCcchhhccc
Confidence 9999999999999887765554
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=5.3e-10 Score=100.01 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=102.1
Q ss_pred CCCCEEEEEeCCCcEEEEeC-CCCeEEeecc--C-CCe-eEEEE-------------------------EEEEEeCCCeE
Q 046394 55 SSGRYMAAAGCKGYPYFYNR-DGTELHCSKE--H-GEV-LKLQF-------------------------LLASINKLGQL 104 (378)
Q Consensus 55 p~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~--~-~~~-~~l~~-------------------------~l~s~~~d~~i 104 (378)
|-+.|+|....||.++||+. .++....+.. + .+. ++..| .++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44578999999999999994 4433333322 1 122 44555 67777788899
Q ss_pred EEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394 105 RYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV 184 (378)
Q Consensus 105 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~ 184 (378)
.+|++..|+....+... .|.+.|.++.++.+-..|.+++.|+.+..|+...+..
T Consensus 83 ~~ys~~~g~it~~~st~--------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTD--------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred EEEEecCCeEEEEEecC--------------------------CCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 99999888887777632 5666666666666666667777777777777766666
Q ss_pred eeee---cCCceEEEEecCCCc--------cccCCCCCceEEEeeccCCcceeeeEEcCC
Q 046394 185 LQTL---PGHAKTLDFSRKDSG--------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPY 233 (378)
Q Consensus 185 ~~~~---~~~i~~~~~sp~g~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 233 (378)
++.+ ...+.+++.+|||.. .+|+..+.+.+..+.+ |.++|.++.|..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTG-HGSPVRTLSFTTL 195 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEeccceEEEEEccCceEEEEecC-CCcceEEEEEEEe
Confidence 6665 355666777777553 4566666666777766 7777777777665
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.24 E-value=2.7e-10 Score=109.66 Aligned_cols=192 Identities=16% Similarity=0.148 Sum_probs=142.0
Q ss_pred EeCCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCC--C-----cEEEEEecCCCCeeEEEEcCCCCEE
Q 046394 72 YNRDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTM--G-----EIVGNFWTGLGRTDVIRVNPFNGVV 137 (378)
Q Consensus 72 wd~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~--~-----~~~~~~~~~~~~v~~~~~s~~~~~l 137 (378)
|+..|..+..+..|... ..++. +|+|||.||+|++||++. + ....++......+.++..-+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 78888889999999875 66666 999999999999999864 1 2333444456889999999999999
Q ss_pred EEEcCCCee----eec------------------CCCEEEE-EEec-CCC-EEEEEECCCeEEEEEcCCceeeeee----
Q 046394 138 SLGHSGGTM----LCH------------------QGPVSAL-AFHP-NGH-LMATSGKDCKIKIWDLRKYEVLQTL---- 188 (378)
Q Consensus 138 ~~~~~d~~~----~~h------------------~~~v~~~-~~sp-~g~-~l~t~~~d~~i~iwd~~~~~~~~~~---- 188 (378)
|+++.||.+ ..| .+.+.+| +|.. .+. .++.+..-+.|..||+++...+.++
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 999999980 011 1223333 3333 233 6777888889999999987766555
Q ss_pred -cCCceEEEEecCCC----------ccccCCCCCceEEEeeccCCcceeeeEEcCCCC---eEEEe-c-CCCeEEEEEcC
Q 046394 189 -PGHAKTLDFSRKDS----------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED---VLGIG-H-SMGVSGILIPG 252 (378)
Q Consensus 189 -~~~i~~~~~sp~g~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~-~-~~g~~~~~~~~ 252 (378)
++.|++++.+|.+. ..+|+.+-+.++..|..++..+|..|..+|-.. ..+++ . ..+.+.+|-..
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 78899999999665 478888888888888876778898888887654 44443 3 46667777766
Q ss_pred CCCcccccccC
Q 046394 253 SGEPNFDSWVA 263 (378)
Q Consensus 253 s~d~~i~~w~~ 263 (378)
.+.+...+|..
T Consensus 1274 ~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1274 TGLRQTVLWAS 1284 (1431)
T ss_pred cCcceEEEEcC
Confidence 67777777765
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=3.4e-09 Score=87.10 Aligned_cols=167 Identities=15% Similarity=0.097 Sum_probs=116.7
Q ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEE
Q 046394 48 PYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGN 117 (378)
Q Consensus 48 v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~ 117 (378)
..++.|++.|..++++-.+|.+.+-+.+... ++.++.|.-. ....| ++.+||.|+.+..||++... +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---T 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---c
Confidence 3478899999999999999999966643322 2357778755 66677 89999999999999998332 2
Q ss_pred EecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC-ceeeeee--cCCce
Q 046394 118 FWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRK-YEVLQTL--PGHAK 193 (378)
Q Consensus 118 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~-~~~~~~~--~~~i~ 193 (378)
+..+.. ..|...|.+|.-+| .+.+++||+.|-.|++||.|+ ++++..- .+.|+
T Consensus 201 ~i~~n~-----------------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVW 257 (339)
T KOG0280|consen 201 FIWHNS-----------------------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVW 257 (339)
T ss_pred eeeecc-----------------------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceE
Confidence 211211 25788899998887 688999999999999999995 8887766 68999
Q ss_pred EEEEecCCCc-----------cccCC--CCCc---eEEEeeccCCcceeeeEEcCCCCeEEEec
Q 046394 194 TLDFSRKDSG-----------DFSGS--HNYN---RYMGYSMVKGYQIGKVSFRPYEDVLGIGH 241 (378)
Q Consensus 194 ~~~~sp~g~~-----------~~~~~--~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 241 (378)
.+.++|.-.. .+.+. ...+ ....+.. |.+-+..-.|.....+||+++
T Consensus 258 Ri~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~-hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 258 RIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI-HDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred EEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc-ccceeeccccccccceeeeee
Confidence 9999996441 11111 1111 2333444 555566666755555666654
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1e-08 Score=94.37 Aligned_cols=180 Identities=13% Similarity=0.037 Sum_probs=110.2
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCEE---EEEeCCC--cEEEEeCCCCeEEeeccCCCe-eEEEE-----E
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM---AAAGCKG--YPYFYNRDGTELHCSKEHGEV-LKLQF-----L 94 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l---~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~ 94 (378)
.|.+.|...+. ...+......+.+-+|||||+.+ ++...+| .|++.++.+.....+....+. ....| .
T Consensus 166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 56667765443 34555555667788999999752 2444443 577778766554444443333 55666 3
Q ss_pred EE-EEeC----CCeEEEEEcCCC---cEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe-----------------eee
Q 046394 95 LA-SINK----LGQLRYQNVTMG---EIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT-----------------MLC 148 (378)
Q Consensus 95 l~-s~~~----d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~-----------------~~~ 148 (378)
|+ +... +-.+.+|++..+ ................+|+|||+.|+..+ .++. +..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 33 3322 223444777653 33333322234456789999999777655 3443 112
Q ss_pred cCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc
Q 046394 149 HQGPVSALAFHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~ 206 (378)
+...+...+|||||++|+..+.+ ..|.+||+.+++..... ...+..+.|+|||...++
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f 387 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVY 387 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEE
Confidence 23456678999999998876643 37999999888764333 245678899999986554
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.6e-09 Score=97.25 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=109.2
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEE-EeCCC--cEEEEeCCCCeEEeeccCCCe-eEEEE-----EE
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAA-AGCKG--YPYFYNRDGTELHCSKEHGEV-LKLQF-----LL 95 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l 95 (378)
..+.+||+.+++.. .+....+...+++|||||+.|+. .+.+| .|++||..+..+..+..+... ..+.| .+
T Consensus 228 ~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 228 SAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred cEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence 46889999887653 33333445568899999997764 45555 599999766666667666555 67788 45
Q ss_pred EEEe-CCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEE
Q 046394 96 ASIN-KLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALA 157 (378)
Q Consensus 96 ~s~~-~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~ 157 (378)
+.++ .++. |+++|+.+++... +.........++|+|+|+.|+..+.++. ...+........
T Consensus 307 ~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~ 385 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPS 385 (433)
T ss_pred EEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCce
Confidence 4444 4444 7777777766433 2233344557899999998887654331 111222345678
Q ss_pred EecCCCEEEEEECC---CeEEEEEcCCceeeeee---cCCceEEEEec
Q 046394 158 FHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL---PGHAKTLDFSR 199 (378)
Q Consensus 158 ~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~---~~~i~~~~~sp 199 (378)
|+|||++++..+.+ +.|.++|+.. .....+ .+.+..++|+|
T Consensus 386 ~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 386 FAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 99999988776653 3577788743 333333 24455566655
No 240
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=3.7e-10 Score=96.49 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=105.1
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----EEeeccCCCeeEEEE--------EEEEEeCCCeEEEEEcCCCc
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-----LHCSKEHGEVLKLQF--------LLASINKLGQLRYQNVTMGE 113 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~l~~--------~l~s~~~d~~i~iwd~~~~~ 113 (378)
.+..+..+|.+++||++..+....+++..+.+ +..+.....++++.| ....++....+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34566778899999999888887777732222 222333333355555 33345566677788776655
Q ss_pred EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
+.. +-+|-..++.++|+||+++|+++..|.. ..||..-|..+++-++ ..|+++|.|++|++||
T Consensus 144 ~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred cch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 443 3478899999999999999999999988 6789999999999765 4589999999999999
Q ss_pred cCCceeeeee
Q 046394 179 LRKYEVLQTL 188 (378)
Q Consensus 179 ~~~~~~~~~~ 188 (378)
+.+|+++.++
T Consensus 222 ~~sgk~L~t~ 231 (390)
T KOG3914|consen 222 ITSGKLLDTC 231 (390)
T ss_pred cccCCccccc
Confidence 9999999887
No 241
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=8.6e-10 Score=104.84 Aligned_cols=159 Identities=23% Similarity=0.262 Sum_probs=116.3
Q ss_pred cceeeeeecccceeeEEeecCC-CCceEEEEc-CCCCEEEEEeCCCcEEEEeCC----CCeEEeeccCCCe---eEEEE-
Q 046394 24 EAIAREVDILSSRNQYDIMLPE-LGPYTLDFT-SSGRYMAAAGCKGYPYFYNRD----GTELHCSKEHGEV---LKLQF- 93 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~s-p~g~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~---~~l~~- 93 (378)
-..|++||+....++..+...+ ..|+++.-+ +.|+.|++|..||.|++||.. ...+...+.|... ..+.+
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 4678888998888888876543 456666554 346899999999999999932 2356667777753 55666
Q ss_pred -----EEEEEeCCCeEEEEEcCCCcE--EEEEecC--CC-CeeEEEEcCCCCEEEEEcCCCe------------------
Q 046394 94 -----LLASINKLGQLRYQNVTMGEI--VGNFWTG--LG-RTDVIRVNPFNGVVSLGHSGGT------------------ 145 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~~~--~~~~~~~--~~-~v~~~~~s~~~~~l~~~~~d~~------------------ 145 (378)
.+++|+.||.|++||++.... ..++..| .+ ..+++..+++...+|+|+..-.
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPG 1345 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcc
Confidence 699999999999999987421 1122222 13 5889999999999999986222
Q ss_pred -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
+....+.+.|++|+|.--.+|.|+.|.+|.||.....
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 2223466789999998888899999999999976543
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.16 E-value=8.5e-09 Score=92.52 Aligned_cols=222 Identities=11% Similarity=0.114 Sum_probs=127.5
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEe-CCCCeEEeeccCC------
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYN-RDGTELHCSKEHG------ 86 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd-~~~~~~~~~~~~~------ 86 (378)
....|....++.+.++|+.+.+.+..+... ....++++|+||+++++++. .+.+.++| .+.+.+..+....
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGP 126 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccccc
Confidence 334666677899999999999999999875 56889999999999998764 88999999 5666676654321
Q ss_pred C--eeEEEE------EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394 87 E--VLKLQF------LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------ 145 (378)
Q Consensus 87 ~--~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------ 145 (378)
. +.++.. ++++.-..+.|.+.|......+. .............|+|++++++++.....
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 1 123332 44455555888888877654332 23234466788999999998877643222
Q ss_pred -------eeecCCCEEEE-------EEe--cCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc-
Q 046394 146 -------MLCHQGPVSAL-------AFH--PNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS- 206 (378)
Q Consensus 146 -------~~~h~~~v~~~-------~~s--p~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~- 206 (378)
-..|..++..+ .|. ..+...++.-....+.+||..+.+.+.++ .+..--+..+|++.+...
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 11233333332 121 12233323333445678899999999988 444477788999886332
Q ss_pred -------------CCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394 207 -------------GSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL 237 (378)
Q Consensus 207 -------------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 237 (378)
+..+......+....+..+..+.|+++|+.+
T Consensus 287 ~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred ccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 2333333333321123348899999999854
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=3.8e-07 Score=81.86 Aligned_cols=224 Identities=13% Similarity=0.096 Sum_probs=132.9
Q ss_pred ceeeeeec--cccee--eEEeecCCCCceEEEEcCCCCEEEEEeC----CCcEEEEeCCC--CeE---Eeec-cCCCeeE
Q 046394 25 AIAREVDI--LSSRN--QYDIMLPELGPYTLDFTSSGRYMAAAGC----KGYPYFYNRDG--TEL---HCSK-EHGEVLK 90 (378)
Q Consensus 25 ~~i~~~d~--~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~~----dg~i~iwd~~~--~~~---~~~~-~~~~~~~ 90 (378)
+-|.+|.+ .+++. +..+. ....+..++++|++++|++... +|.|..|.... ..+ .... ....+..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 55666666 44432 22222 2356778999999999998876 56888888432 232 2222 2223356
Q ss_pred EEE-----EEE-EEeCCCeEEEEEcCC-CcEEEE---Ee----------cCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394 91 LQF-----LLA-SINKLGQLRYQNVTM-GEIVGN---FW----------TGLGRTDVIRVNPFNGVVSLGHSGGT----- 145 (378)
Q Consensus 91 l~~-----~l~-s~~~d~~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~----- 145 (378)
+++ +++ +.-.+|.|.++++.. |..... +. .....+.++.++|+++++++......
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 666 444 444689999999986 443222 21 11245789999999998887654332
Q ss_pred -e--------------eecCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcC--Ccee--eeee---c------CCceEEE
Q 046394 146 -M--------------LCHQGPVSALAFHPNGHLMATS-GKDCKIKIWDLR--KYEV--LQTL---P------GHAKTLD 196 (378)
Q Consensus 146 -~--------------~~h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~--~~~~--~~~~---~------~~i~~~~ 196 (378)
+ .........++|+|+|+++... -.++.|.+|++. ++.. +..+ + .....|.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 1 1122446789999999987555 467899999998 4433 3333 1 1467899
Q ss_pred EecCCCccccC-----------C--C--CCceEEEeeccCCcceeeeEEcCCCCeEEEecC-CCeEEEEE
Q 046394 197 FSRKDSGDFSG-----------S--H--NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHS-MGVSGILI 250 (378)
Q Consensus 197 ~sp~g~~~~~~-----------~--~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~g~~~~~~ 250 (378)
++|||++.... . . ....+..... .+.....+.++|+|++|+++.. ++.+.+|.
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 99999962221 1 1 1122222322 3455788999999998887764 44444443
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.12 E-value=3.2e-08 Score=87.30 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=64.4
Q ss_pred ecCCCEEEEEEecCCCEEEEEE--CCCeEEEEEcCCceeeeee-cCCceEEEEecCCCcc-------------ccCCCCC
Q 046394 148 CHQGPVSALAFHPNGHLMATSG--KDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGD-------------FSGSHNY 211 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~-------------~~~~~~~ 211 (378)
...++|..++|+|.++.+++++ .+..+.++|++.. +...+ ...=+.+.|||.+++. +|+....
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 3467888899999887776655 5678888888765 44444 5666778888877763 3332222
Q ss_pred ceEE-EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394 212 NRYM-GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA 263 (378)
Q Consensus 212 ~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~ 263 (378)
-... .+.+ ....-+.|+|||+++.+....-. ---|..+.+|++
T Consensus 351 f~~~~~~~~---~n~s~~~wspd~qF~~~~~ts~k------~~~Dn~i~l~~v 394 (561)
T COG5354 351 FKVAGAFNG---LNTSYCDWSPDGQFYDTDTTSEK------LRVDNSIKLWDV 394 (561)
T ss_pred eEEEEEeec---CCceEeeccCCceEEEecCCCcc------cccCcceEEEEe
Confidence 2211 3322 23445678999987765544321 123566666665
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=1.6e-09 Score=90.90 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=136.7
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC------eEEeeccCCC-------------eeEEEE-------EEEEEe
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT------ELHCSKEHGE-------------VLKLQF-------LLASIN 99 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~-------------~~~l~~-------~l~s~~ 99 (378)
.-+.++.|...|.+||||..+|.|.++..+.. ....++.|.. ++.+.| .++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 45789999999999999999999999983211 1233444432 244566 677778
Q ss_pred CCCeEEEEEcCCCcE-----------------------------------EEEE-ecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394 100 KLGQLRYQNVTMGEI-----------------------------------VGNF-WTGLGRTDVIRVNPFNGVVSLGHSG 143 (378)
Q Consensus 100 ~d~~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 143 (378)
.|.+|++|-+..... .+.+ ..|.-.|+++.++.|...++++.+-
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 999999998753211 0001 1345568899999999999998876
Q ss_pred Ce----------------eeec-----CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceee------ee--------
Q 046394 144 GT----------------MLCH-----QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVL------QT-------- 187 (378)
Q Consensus 144 ~~----------------~~~h-----~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~------~~-------- 187 (378)
.. +..+ ..-|++..|+| ..+.|+-.+..|+|++-|+|...+. ..
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 66 1122 23477888999 6788999999999999999953221 11
Q ss_pred -e----cCCceEEEEecCCCc---------cccCC-CCCceEEEeeccCC------------cce---eeeEEcCCCCeE
Q 046394 188 -L----PGHAKTLDFSRKDSG---------DFSGS-HNYNRYMGYSMVKG------------YQI---GKVSFRPYEDVL 237 (378)
Q Consensus 188 -~----~~~i~~~~~sp~g~~---------~~~~~-~~~~~~~~~~~~~~------------~~v---~~~~~sp~g~~l 237 (378)
+ -..|..+.||++|++ .+|+. ....++.++.. |. ..| ..++|+.++.++
T Consensus 266 sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v 344 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKFECSWSGNDSYV 344 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence 1 246788999999997 56665 33344444443 21 112 456788887677
Q ss_pred EEecCCCeEEEEE
Q 046394 238 GIGHSMGVSGILI 250 (378)
Q Consensus 238 ~~~~~~g~~~~~~ 250 (378)
++|+.....+++-
T Consensus 345 ~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 345 MTGSYNNVFRVFN 357 (433)
T ss_pred ecccccceEEEec
Confidence 7666666555543
No 246
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=2.4e-09 Score=95.11 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=121.8
Q ss_pred ceeeEEEeccceeeeeecccceeeEEee-cCCCCceEEEEcCC--CCEEEEEeCCCcEEEEeCCC-----------CeEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIM-LPELGPYTLDFTSS--GRYMAAAGCKGYPYFYNRDG-----------TELH 80 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp~--g~~l~~~~~dg~i~iwd~~~-----------~~~~ 80 (378)
++-.++.++|-.+-|||....+.++.+. +|...|+|+.|-|. .+.+++|..|..|+++|++. ...+
T Consensus 62 G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~ 141 (758)
T KOG1310|consen 62 GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR 141 (758)
T ss_pred CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhh
Confidence 3445566677888899999888888874 79999999999994 46889999999999999642 2234
Q ss_pred eeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcE-------E---EEEecCCCCeeEEEEcCCC-CEEEEEcC
Q 046394 81 CSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEI-------V---GNFWTGLGRTDVIRVNPFN-GVVSLGHS 142 (378)
Q Consensus 81 ~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~-------~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~ 142 (378)
.+..|... ..++. .+.+++.||+|+-+|++.... . ..+....-...|++++|.. .+|++|+.
T Consensus 142 ~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs 221 (758)
T KOG1310|consen 142 CWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS 221 (758)
T ss_pred hhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC
Confidence 45556542 33333 788999999999999976321 1 1111122346789999977 57788877
Q ss_pred CCe---------------------------------eeecC-----------CCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 143 GGT---------------------------------MLCHQ-----------GPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 143 d~~---------------------------------~~~h~-----------~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
+-- ..+|. -.++-++|+|+|.-|+..-..-.|+++|
T Consensus 222 dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 222 DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence 654 11121 1146678999998877666666899999
Q ss_pred cCCceeeeee
Q 046394 179 LRKYEVLQTL 188 (378)
Q Consensus 179 ~~~~~~~~~~ 188 (378)
+..++....+
T Consensus 302 vn~~~~~~~y 311 (758)
T KOG1310|consen 302 VNEDKSPTPY 311 (758)
T ss_pred ecCCCCceee
Confidence 9877665444
No 247
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4e-09 Score=89.91 Aligned_cols=139 Identities=8% Similarity=0.042 Sum_probs=87.5
Q ss_pred CCCCeeecCCceeeEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeec
Q 046394 5 SEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSK 83 (378)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 83 (378)
++..+|+++|.+.-.++|.-..+-+ -.+.+.+..... |...|+|++|....+.+++|+.+++|...|+......-..
T Consensus 66 ~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~ 143 (609)
T KOG4227|consen 66 HNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA 143 (609)
T ss_pred cCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence 4455666666665555555222111 122233333332 4478999999998899999999999999996554443333
Q ss_pred cCCC----eeEEEE-----EEEEEeCCCeEEEEEcCCCc-EEE--EEecCCCCeeEEEEcCCC-CEEEEEcCCCe
Q 046394 84 EHGE----VLKLQF-----LLASINKLGQLRYQNVTMGE-IVG--NFWTGLGRTDVIRVNPFN-GVVSLGHSGGT 145 (378)
Q Consensus 84 ~~~~----~~~l~~-----~l~s~~~d~~i~iwd~~~~~-~~~--~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~ 145 (378)
.|.. +..+.. .|++.+.++.|.+||.+..+ ... ...........+-|+|.. .+|++++..+.
T Consensus 144 ~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G 218 (609)
T KOG4227|consen 144 NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG 218 (609)
T ss_pred cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC
Confidence 3332 355544 88999999999999998755 222 222344567778888866 45666555443
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.08 E-value=2.6e-08 Score=92.16 Aligned_cols=176 Identities=14% Similarity=0.068 Sum_probs=110.2
Q ss_pred cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394 68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS 138 (378)
Q Consensus 68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 138 (378)
.|.++|.++.....+..+... ....| .++.++. ...|++||+.+++.... ....+.+.+++|+|||+.|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEE
Confidence 688888777666666665543 66677 4444433 25799999988865433 33445667799999998776
Q ss_pred E-EcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECC-C--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394 139 L-GHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL--PGHAKTLDF 197 (378)
Q Consensus 139 ~-~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~ 197 (378)
. .+.++. +..+.......+|+|+|++|+.++.. + .|.++|+.++...... ...+..+.|
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW 329 (417)
T ss_pred EEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence 4 343332 22333444577899999998876643 3 6888888776643322 355678899
Q ss_pred ecCCCccccCCCCC--ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCC
Q 046394 198 SRKDSGDFSGSHNY--NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 198 sp~g~~~~~~~~~~--~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
+|+|.+.++..... ..+..+... .........|+|||.+|+.++.++
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 99998755433221 111121110 111244568999999887766654
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=3.6e-09 Score=94.42 Aligned_cols=162 Identities=11% Similarity=0.112 Sum_probs=121.8
Q ss_pred eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEee------ccCC----
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCS------KEHG---- 86 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~------~~~~---- 86 (378)
.|.+.....|+-+++..|.-+..+....++++++..++...+|++|+.+|.|-.||.. ...+..+ ..|.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 3444455566777888888888888877899999999998899999999999999943 2222222 2222
Q ss_pred --CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEe
Q 046394 87 --EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFH 159 (378)
Q Consensus 87 --~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~s 159 (378)
.++++.| .+++|..+|.+.|||+++.+++..-. | +..-+|..+.|.
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h--------------------------~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-H--------------------------GYELPIKKLDWQ 280 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-c--------------------------CCccceeeeccc
Confidence 1488999 89999999999999999988876542 2 345678888887
Q ss_pred cC--CCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394 160 PN--GHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 160 p~--g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~ 207 (378)
+. ++.++|+ ....++|||-.+|+....+ ...++.+|+-|++-..+..
T Consensus 281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 74 3344444 4568999999999999888 4679999999987754443
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=8.5e-07 Score=78.14 Aligned_cols=224 Identities=13% Similarity=0.048 Sum_probs=136.2
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC----------CCcEEEEe-CCCCeEEeeccCCCe-----
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC----------KGYPYFYN-RDGTELHCSKEHGEV----- 88 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~----------dg~i~iwd-~~~~~~~~~~~~~~~----- 88 (378)
+.+.+.|..+++.+-.+... .....+ +||||+.|+++.. +..|.+|| .+...+..+.....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 68999999999988888765 344455 9999998887765 67899999 566777666643321
Q ss_pred ---eEEEE-----EEEEEe--CCCeEEEEEcCCCcEEEEEecCCCC-------eeEEEEcCCCCEEEEEcCC-CeeeecC
Q 046394 89 ---LKLQF-----LLASIN--KLGQLRYQNVTMGEIVGNFWTGLGR-------TDVIRVNPFNGVVSLGHSG-GTMLCHQ 150 (378)
Q Consensus 89 ---~~l~~-----~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~d-~~~~~h~ 150 (378)
..+++ +++... .+..|.+.|+.+++.+..+...... -..+....||..+.....+ |....++
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 23444 444333 3789999999999988887653211 1122334555544433322 2211111
Q ss_pred CCEEE---------EEEec-CCCEEEEEECCCeEEEEEcCC-----ceeeeee----------cCCceEEEEecCCCccc
Q 046394 151 GPVSA---------LAFHP-NGHLMATSGKDCKIKIWDLRK-----YEVLQTL----------PGHAKTLDFSRKDSGDF 205 (378)
Q Consensus 151 ~~v~~---------~~~sp-~g~~l~t~~~d~~i~iwd~~~-----~~~~~~~----------~~~i~~~~~sp~g~~~~ 205 (378)
..+.. -.|.+ +|.++..... |+|.+.|+.. ...+..+ ++.+.-++++|+|.+.+
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 11100 13455 7877766665 9999999643 3333332 22334589999887522
Q ss_pred c--------------------CCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEec-CCCeEEEEEcCC
Q 046394 206 S--------------------GSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGH-SMGVSGILIPGS 253 (378)
Q Consensus 206 ~--------------------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~~g~~~~~~~~s 253 (378)
. +..+.+.+..... +..+..+.++|||+ .|.+.+ .++.+.++...+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 2 2334444444432 56788999999998 666555 456566665443
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=1.2e-08 Score=97.01 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=92.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe---eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC
Q 046394 56 SGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV---LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGR 124 (378)
Q Consensus 56 ~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~---~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 124 (378)
+...++.++.+..+.+||... ..+..+.+.... .++-+ ++++|+.-+.|.+|+..-.+.-..+
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l------ 171 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL------ 171 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee------
Confidence 345677777888899999543 333344333332 22222 8888888899999987622211122
Q ss_pred eeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee-ee---cCCceEEEEecC
Q 046394 125 TDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ-TL---PGHAKTLDFSRK 200 (378)
Q Consensus 125 v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~-~~---~~~i~~~~~sp~ 200 (378)
.+|.+.|.++.|+.||++++++|.|.++++|++.+.+... +. ...+..++|.|.
T Consensus 172 ----------------------~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 172 ----------------------KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN 229 (967)
T ss_pred ----------------------cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence 3666666777776677777777777777777766655543 22 255666666665
Q ss_pred CCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394 201 DSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 201 g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
.. .+|+. ....+..+..+....|..+...++...+++++.||
T Consensus 230 -~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred -eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 22 33321 11222244443456788899888885555544444
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=108.79 Aligned_cols=175 Identities=13% Similarity=0.172 Sum_probs=126.1
Q ss_pred eEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE--
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-- 93 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-- 93 (378)
.+...+|+.+++|....++.+..+.. ....|+.+.|+.+|+.+..+..||.+.+|.....+....+.|... ++..|
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG 2302 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee
Confidence 34456777888888888877766643 237789999999999999999999999999888888889999876 88888
Q ss_pred -EEEEEe---CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEE
Q 046394 94 -LLASIN---KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSG 169 (378)
Q Consensus 94 -~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~ 169 (378)
.+++++ .++.+.+||..-.....-+ ..+|.+.++++++-|.-+.|++||
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v---------------------------~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLV---------------------------HTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCccccee---------------------------eeecCCCceEEEEcCcceEEEecC
Confidence 777765 4678999996321111111 026778888888888888888888
Q ss_pred CCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeec
Q 046394 170 KDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSM 219 (378)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~ 219 (378)
.+|.|++||++..++++++ +..-.-+.=+..|...+|.......+..+..
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEccccchhhcCch
Confidence 8888888888887777777 2112222334456667777666655555544
No 253
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=1.1e-09 Score=95.22 Aligned_cols=153 Identities=9% Similarity=0.033 Sum_probs=112.1
Q ss_pred EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE----
Q 046394 20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---- 93 (378)
Q Consensus 20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---- 93 (378)
..+..+.++..|+++|+.+..+....+.+..|+-+|-...+-+|...|+|.+|. ....++..+-+|.++ .++++
T Consensus 226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G 305 (545)
T KOG1272|consen 226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG 305 (545)
T ss_pred ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC
Confidence 345567888889999999999988888999999999888999999999999999 456677788889887 99999
Q ss_pred -EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeec--CCCEEE
Q 046394 94 -LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCH--QGPVSA 155 (378)
Q Consensus 94 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h--~~~v~~ 155 (378)
+++|+|.|..++|||++....+.++.. ..+...+++|..|-+.++-+..-. +..| .++|..
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~ 384 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVED 384 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCccccc
Confidence 999999999999999998776666554 445556666655543332221111 1111 235666
Q ss_pred EEEecCCCEEEEEECCCe
Q 046394 156 LAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d~~ 173 (378)
+.|.|-...|..|...|.
T Consensus 385 l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 385 LRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ceeccHHHeeeccccCCc
Confidence 666665555655555553
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.2e-07 Score=84.64 Aligned_cols=182 Identities=13% Similarity=0.191 Sum_probs=121.2
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCCeEEeeccCC---Ce--eEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG--RYMAA-----AGCKGYPYFYNRDGTELHCSKEHG---EV--LKL 91 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~---~~--~~l 91 (378)
.+.+++|++..- ....-..|..+|..+.+||.+ ..+|+ +|.-+.|+||...-...+...+.. .. ..+
T Consensus 145 ~nev~f~~~~~f-~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 145 SNEVQFYDLGSF-KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred cceEEEEecCCc-cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 356777777662 233445567789999999974 34543 344568999985422222211111 11 445
Q ss_pred EE--------EEEEEeCC---------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394 92 QF--------LLASINKL---------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------- 145 (378)
Q Consensus 92 ~~--------~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------- 145 (378)
.| +|++..-| .+++++++....++..+ ...++|.++.|+|+++.|++...---
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr 302 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR 302 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC
Confidence 55 33333333 46888888733333333 35799999999999987776543211
Q ss_pred ----eeecCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394 146 ----MLCHQGPVSALAFHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG 207 (378)
Q Consensus 146 ----~~~h~~~v~~~~~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~ 207 (378)
+.-..++=+++-|+|.|++|+.+|-+ |.|-|||+.+.+++..+ -...+-..|+|||.+.+..
T Consensus 303 ~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 303 GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence 33445677889999999999998865 58999999999999888 5677888999999985543
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.3e-06 Score=74.44 Aligned_cols=221 Identities=12% Similarity=0.090 Sum_probs=138.1
Q ss_pred cceeeeeecccceee---EEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCC--CeEEeecc---CCCe-eEE
Q 046394 24 EAIAREVDILSSRNQ---YDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDG--TELHCSKE---HGEV-LKL 91 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~---~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~--~~~~~~~~---~~~~-~~l 91 (378)
..-|++|++.+..-. ..+-.+.+.++=|+|+|++++|.++..+ |.|..|.++. ..+..+.. .... ..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456788888744321 2233456788999999999999888654 6677766432 23332221 1122 555
Q ss_pred EE-----EEEEEe-CCCeEEEEEcCC-CcEEE--EEecCCCC----------eeEEEEcCCCCEEEEEcC--CCe-----
Q 046394 92 QF-----LLASIN-KLGQLRYQNVTM-GEIVG--NFWTGLGR----------TDVIRVNPFNGVVSLGHS--GGT----- 145 (378)
Q Consensus 92 ~~-----~l~s~~-~d~~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~s~~~~~l~~~~~--d~~----- 145 (378)
++ +++++. ..|.|.++-+.. |.+.. ....|.+. +.+..++|++++|++... |..
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 55 444444 468899998865 43321 22224343 888999999999887653 332
Q ss_pred -----------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCc--e--eeeee---------cCCceEEEEecC
Q 046394 146 -----------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKY--E--VLQTL---------PGHAKTLDFSRK 200 (378)
Q Consensus 146 -----------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~--~--~~~~~---------~~~i~~~~~sp~ 200 (378)
...-......|.|+|++++....+ -+++|-+|..... + .+.++ ......|..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 112234567899999999976554 6899999998762 2 23333 245788999999
Q ss_pred CCccccCCC-------------CC--ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394 201 DSGDFSGSH-------------NY--NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV 245 (378)
Q Consensus 201 g~~~~~~~~-------------~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~ 245 (378)
|++....-+ .+ ..+..... ++.....+.|+|+|++|++++.++.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT-EGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc-CCcCCccceeCCCCCEEEEEccCCC
Confidence 997222111 11 11222222 4555788899999999888887653
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=7.8e-09 Score=98.34 Aligned_cols=163 Identities=17% Similarity=0.114 Sum_probs=127.1
Q ss_pred eeEEEeccceeeeeecccceeeEEeecCCCCc----eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EeeccCCCe-eE
Q 046394 17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGP----YTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL-HCSKEHGEV-LK 90 (378)
Q Consensus 17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v----~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~ 90 (378)
+.+.+...+.+-+||...+...+.+....... .-+-++++.-++++|+.-+.|.+|+...... ..+.+|.+. .+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~ 180 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFS 180 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEE
Confidence 44555667888888887776665555432222 2334566667899999999999999433333 358899987 88
Q ss_pred EEE-----EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecC-
Q 046394 91 LQF-----LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQ- 150 (378)
Q Consensus 91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~- 150 (378)
+.| +++++|.|.++++|++.+++... ..-+|...+..++|.|. .+++++.|-+ +.+|.
T Consensus 181 i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g 258 (967)
T KOG0974|consen 181 IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSG 258 (967)
T ss_pred EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhh
Confidence 988 99999999999999999987655 44478999999999999 9999999887 34443
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
..|..++..++...++|++.|+.+++||+..
T Consensus 259 ~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 259 KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 4578899988888999999999999999854
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.4e-07 Score=87.61 Aligned_cols=175 Identities=10% Similarity=-0.007 Sum_probs=107.6
Q ss_pred cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeC-C--CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394 68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINK-L--GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS 138 (378)
Q Consensus 68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 138 (378)
.|.++|.+|.....+..+... ....| .|+..+. + ..|.+||+.+++... +....+.+....|+|||+.|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 488888887766666555554 77788 4544432 2 469999998887543 333344556789999998776
Q ss_pred E-EcCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CC--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394 139 L-GHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DC--KIKIWDLRKYEVLQTL--PGHAKTLDF 197 (378)
Q Consensus 139 ~-~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~~ 197 (378)
. .+.++. +..+........|+|||+.|+..+. ++ .|.++|+.+++..... ........|
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL 338 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence 4 444443 2334445567899999998876664 33 6788888777653322 233456789
Q ss_pred ecCCCccccCCCCCc--eEEEeec--------cCCcceeeeEEcCCCCeEEEecCC
Q 046394 198 SRKDSGDFSGSHNYN--RYMGYSM--------VKGYQIGKVSFRPYEDVLGIGHSM 243 (378)
Q Consensus 198 sp~g~~~~~~~~~~~--~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~~ 243 (378)
+|||.+.++...... .+..+.. ..........|+|||+.++..+.+
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence 999987444321111 1111111 011123356899999988776544
No 258
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.98 E-value=7.5e-08 Score=78.42 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=102.9
Q ss_pred EEEEcCC-----CCEEEEEeCCCcEEEEeCCCCeEEee--ccCCC-e------eEEEEEEEEEeCCCeEEEEEcCCCcEE
Q 046394 50 TLDFTSS-----GRYMAAAGCKGYPYFYNRDGTELHCS--KEHGE-V------LKLQFLLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 50 ~~~~sp~-----g~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~------~~l~~~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
.|.|.|. ..+||.||..|...+|.......+.. ..|.. + -...+-+..++.|.++++.++.-+..-
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4556552 24799999999999999654443332 22221 1 112225666778888888888654432
Q ss_pred EEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
.......-.++++.+++|++++++.++... .....+.=.+..|+.....+|++..||++.|||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D 231 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD 231 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence 222222234789999999999998877665 111122235678888888999999999999999
Q ss_pred cCCc-eeeeee-------cCCceEEEEecCCCc
Q 046394 179 LRKY-EVLQTL-------PGHAKTLDFSRKDSG 203 (378)
Q Consensus 179 ~~~~-~~~~~~-------~~~i~~~~~sp~g~~ 203 (378)
++.. .+..+. .+.+..+.|+|-|..
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL 264 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence 9974 343333 367899999997764
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.4e-07 Score=87.60 Aligned_cols=172 Identities=14% Similarity=0.084 Sum_probs=102.8
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAA-AGCKGY--PYFYNRDGTELHCSKEHGEV-LKLQF------L 94 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~-~~l~~------~ 94 (378)
..|.+||+.+++.. .+....+.....+|||||+.|+. .+.+|. |++||..+..+..+..+... ....| +
T Consensus 242 ~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 242 AEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred cEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence 35888898877643 22222234457899999998775 455664 77888776666666665544 66777 3
Q ss_pred EEEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------eeecC---------CCEEEEE
Q 046394 95 LASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------MLCHQ---------GPVSALA 157 (378)
Q Consensus 95 l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------~~~h~---------~~v~~~~ 157 (378)
++++..++ .|.++|+.+++... +..........+|+|||++|+..+..+. +.... .......
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps 399 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPS 399 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCce
Confidence 34443343 57777887776543 2222223345799999998877655332 11001 1122457
Q ss_pred EecCCCEEEEEECC-C--eEEEEEcCCceeeeee---cCCceEEEEec
Q 046394 158 FHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL---PGHAKTLDFSR 199 (378)
Q Consensus 158 ~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~---~~~i~~~~~sp 199 (378)
|+|+|+.|+..+.+ + .+.++|+ +|.....+ .+.+...+|||
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 99999988765543 3 3667776 45544444 23455566665
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=2.3e-07 Score=85.51 Aligned_cols=176 Identities=10% Similarity=0.068 Sum_probs=103.5
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CC--cEEE--EeCC----CCeEEeeccCCCe-eEEEE-
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KG--YPYF--YNRD----GTELHCSKEHGEV-LKLQF- 93 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg--~i~i--wd~~----~~~~~~~~~~~~~-~~l~~- 93 (378)
..|.+.++.+++.. .+....+.....+|||||+.||..+. +| .+++ |+.. +..........+. ....|
T Consensus 211 ~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 211 PKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred ceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 45777788777543 33333455667899999998887653 23 3444 6643 2222233233233 56677
Q ss_pred ----EEE-EEeCCCeEEEE--EcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeec
Q 046394 94 ----LLA-SINKLGQLRYQ--NVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCH 149 (378)
Q Consensus 94 ----~l~-s~~~d~~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h 149 (378)
.|+ ++..+|...+| ++.. +.....+......+....|+|||+.|+..+.. +. +...
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 444 44456654455 4432 23344444445567789999999988766543 22 2222
Q ss_pred CCCEEEEEEecCCCEEEEEEC---CCeEEEEEcCCceeeeee--cCCceEEEEecCC
Q 046394 150 QGPVSALAFHPNGHLMATSGK---DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKD 201 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~---d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g 201 (378)
...+....|+|||+.|+..+. ...|.+||+..++..... .+.+...+|+|-.
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 345677899999998875443 346888898776543333 3445666676643
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=1e-06 Score=88.02 Aligned_cols=231 Identities=12% Similarity=0.068 Sum_probs=143.5
Q ss_pred eeEEEeccceeeee----ecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------------
Q 046394 17 KTWRIKQEAIAREV----DILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-------------- 78 (378)
Q Consensus 17 ~~~~~~~~~~i~~~----d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-------------- 78 (378)
.++.+..+|.|-++ +..+... -....-+.+|.+++||||+..|+..+.+|++.+.+.+-.+
T Consensus 89 ~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 89 SLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGES 167 (928)
T ss_pred cEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCC
Confidence 34445555555555 3333322 1122235789999999999999999999998887632111
Q ss_pred ----------EEeecc------------------------CC-CeeEEEE-----EEEEEeC---C---CeEEEEEcCCC
Q 046394 79 ----------LHCSKE------------------------HG-EVLKLQF-----LLASINK---L---GQLRYQNVTMG 112 (378)
Q Consensus 79 ----------~~~~~~------------------------~~-~~~~l~~-----~l~s~~~---d---~~i~iwd~~~~ 112 (378)
-..|+| .. +...++| +||+.+. . ..++||+-+ |
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G 246 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G 246 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c
Confidence 011111 11 1256778 6666553 2 579999954 7
Q ss_pred cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394 113 EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSALAFHPNGHLMATSGKDC 172 (378)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~ 172 (378)
....+...-.+--.+++|.|.|++||+...... +......|..+.|++++..||....|.
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC
Confidence 655554444455568999999999998876222 112346789999999999999977665
Q ss_pred eEEEEEcCCcee--eeee----cCCceEEEEecCCCc---------------cccCCC--------CCceEEEeec----
Q 046394 173 KIKIWDLRKYEV--LQTL----PGHAKTLDFSRKDSG---------------DFSGSH--------NYNRYMGYSM---- 219 (378)
Q Consensus 173 ~i~iwd~~~~~~--~~~~----~~~i~~~~~sp~g~~---------------~~~~~~--------~~~~~~~~~~---- 219 (378)
|.+|-..++.= -+.+ ...+..+.|+|.... ..|... +...+....|
T Consensus 327 -vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 327 -VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLL 405 (928)
T ss_pred -ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEE
Confidence 99999887542 2222 234555888885432 001000 0011111111
Q ss_pred ------------------cCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 220 ------------------VKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 220 ------------------~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
.-..+|.+++|++++..+|+-..+|.+.++.
T Consensus 406 lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1346799999999998899999999777766
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.93 E-value=3.6e-06 Score=74.26 Aligned_cols=183 Identities=11% Similarity=0.014 Sum_probs=112.6
Q ss_pred ccceeeeeecccceeeEEeecCCC-------CceEEEEcCCCCEEEEEe-C-CCcEEEEeC-CCCeEEeeccCCCeeEEE
Q 046394 23 QEAIAREVDILSSRNQYDIMLPEL-------GPYTLDFTSSGRYMAAAG-C-KGYPYFYNR-DGTELHCSKEHGEVLKLQ 92 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~~~l~~~~~-------~v~~~~~sp~g~~l~~~~-~-dg~i~iwd~-~~~~~~~~~~~~~~~~l~ 92 (378)
.++.|.+||+.+++.+..+..... ....+++||||++|++.. . +..|.+.|. .+..+..+.-.....-..
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~ 154 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP 154 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 689999999999999988886422 234899999999999876 3 689999994 555555555432211111
Q ss_pred E---EEEEEeCCCeEEEEEcCC-CcE-EEE---EecCCCCe-eEEEEcC-CCCEEEEEcCCCe-----------------
Q 046394 93 F---LLASINKLGQLRYQNVTM-GEI-VGN---FWTGLGRT-DVIRVNP-FNGVVSLGHSGGT----------------- 145 (378)
Q Consensus 93 ~---~l~s~~~d~~i~iwd~~~-~~~-~~~---~~~~~~~v-~~~~~s~-~~~~l~~~~~d~~----------------- 145 (378)
. -+.+-+.||......+.+ |+. ... |.....++ ..-.|++ +|.+++++.. |.
T Consensus 155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 1 111223344443333222 221 111 11100000 0013455 7777777666 44
Q ss_pred -e--------eecCCCEEEEEEecCCCEEEEEE----------CCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcc
Q 046394 146 -M--------LCHQGPVSALAFHPNGHLMATSG----------KDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD 204 (378)
Q Consensus 146 -~--------~~h~~~v~~~~~sp~g~~l~t~~----------~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~ 204 (378)
+ ....+.+.-++++|+|+.+.... ..+.|.++|+.+++.+..+ ...+..++++|||+..
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPL 313 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeE
Confidence 0 01223334599999998877643 1257999999999999988 6789999999999943
Q ss_pred cc
Q 046394 205 FS 206 (378)
Q Consensus 205 ~~ 206 (378)
++
T Consensus 314 ly 315 (352)
T TIGR02658 314 LY 315 (352)
T ss_pred EE
Confidence 33
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.90 E-value=8.4e-06 Score=73.22 Aligned_cols=200 Identities=12% Similarity=0.151 Sum_probs=123.4
Q ss_pred CCeeecCC-ceeeEEEec----cceeeeeecccc----eeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC-
Q 046394 7 GGYLEAEG-VEKTWRIKQ----EAIAREVDILSS----RNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD- 75 (378)
Q Consensus 7 ~~~l~~~~-~~~~~~~~~----~~~i~~~d~~~~----~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~- 75 (378)
+.+|+.+. ....|.... .+.|..|.+... ..+.........+..++++|++++|+++.. +|.|.+++++
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 44555543 444555543 457777777653 233334434456778999999999999876 8899999943
Q ss_pred -CCeEEe---ec-----------cCCCeeEEEE------EEEEEeCCCeEEEEEcCCCc--E--EEEEe-cCCCCeeEEE
Q 046394 76 -GTELHC---SK-----------EHGEVLKLQF------LLASINKLGQLRYQNVTMGE--I--VGNFW-TGLGRTDVIR 129 (378)
Q Consensus 76 -~~~~~~---~~-----------~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~--~--~~~~~-~~~~~v~~~~ 129 (378)
|..... +. ....+.++.| ++++.-....|.+|++.... . ...+. ........++
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 332221 21 1122366777 44444455689999997654 3 22232 2345688999
Q ss_pred EcCCCCEEEEEcCCCe----------------------ee-ec--CCCEEEEEEecCCCEEEEEE-CCCeEEEEEcC--C
Q 046394 130 VNPFNGVVSLGHSGGT----------------------ML-CH--QGPVSALAFHPNGHLMATSG-KDCKIKIWDLR--K 181 (378)
Q Consensus 130 ~s~~~~~l~~~~~d~~----------------------~~-~h--~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~--~ 181 (378)
|+|+++++++...... +. +. ......|+++|||++|.++. ..++|.+|++. +
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 9999998877765443 10 01 12567899999999976655 56799999993 2
Q ss_pred cee--eeee---cCCceEEEEecCCCcccc
Q 046394 182 YEV--LQTL---PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 182 ~~~--~~~~---~~~i~~~~~sp~g~~~~~ 206 (378)
+.+ +..+ ......++++|+|.+.+.
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEE
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 333 3333 345899999999976443
No 264
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.3e-08 Score=85.64 Aligned_cols=140 Identities=14% Similarity=0.213 Sum_probs=101.5
Q ss_pred EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC------CCCeEEeeccCCCeeEEEE-
Q 046394 21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR------DGTELHCSKEHGEVLKLQF- 93 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~------~~~~~~~~~~~~~~~~l~~- 93 (378)
+.-+..+-+.|+.|+-.. .+. ..+.|.++.|...+++++.|+.+|.|.++|+ ++.+.+.+.....++++..
T Consensus 230 ~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 333445556666666442 222 3467999999988999999999999999994 2456666665555565544
Q ss_pred -----EEEEEeCCCeEEEEEcCCCcE---EEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEE
Q 046394 94 -----LLASINKLGQLRYQNVTMGEI---VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLM 165 (378)
Q Consensus 94 -----~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l 165 (378)
.|++.+.+|+|.+||++.-++ +.++.+|-+ ..+ -.-+.+.+....+
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN---~~a-----------------------~l~~~v~~eeg~I 361 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN---LSA-----------------------YLPAHVKEEEGSI 361 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccc---ccc-----------------------ccccccccccceE
Confidence 788888999999999987666 777765532 111 1223356666788
Q ss_pred EEEECCCeEEEEEcCCceeeeee
Q 046394 166 ATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 166 ~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
++++.|...+||.+++|.++.++
T Consensus 362 ~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred EEccCeeEEEEEecccCceeecc
Confidence 88999999999999999999888
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.5e-06 Score=79.66 Aligned_cols=114 Identities=9% Similarity=-0.086 Sum_probs=66.7
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCE-EEEEeC---CCcEEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRY-MAAAGC---KGYPYFYNRDGTELHCSKEHGEV-LKLQF------L 94 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~ 94 (378)
.|.+-|..... ...+... +......|||||+. ++..+. ...|+++|+.+.....+....+. ....| +
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 45555554333 3334333 36678999999984 664444 34688999765555555444443 55667 3
Q ss_pred EEEEeC--CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394 95 LASINK--LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 95 l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 142 (378)
+++.+. +..|.++|+.++... .+..+........|+|||+.|+..+.
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEEC
Confidence 334333 456888898777643 34333333345578888876655543
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.86 E-value=2.9e-07 Score=82.79 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=123.9
Q ss_pred eeeEEEeccceeeeeecccceeeEEeec--C-CCCceEEEE------cC--------------CCCEEEEEeCCCcEEEE
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIML--P-ELGPYTLDF------TS--------------SGRYMAAAGCKGYPYFY 72 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~--~-~~~v~~~~~------sp--------------~g~~l~~~~~dg~i~iw 72 (378)
+.+.....++.+++||..+++....+.. | .+...+..| +| +...|+-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 3344556688999999998887665532 1 223333333 22 23467888889999999
Q ss_pred eCCCCeE-Eeec--cCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394 73 NRDGTEL-HCSK--EHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG 143 (378)
Q Consensus 73 d~~~~~~-~~~~--~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 143 (378)
+..+..+ ..+. .|.+. +++.+ .|.+++.|+.+..|+....+.++.+......+.+++++|||..+++++..
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ 165 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQ 165 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccce
Confidence 9544444 4443 46555 77776 89999999999999999999999999989999999999999999988765
Q ss_pred Ce------------eeecCCCEEEEEEecC-----CCEEEEE-ECCCeEEEEEcCC
Q 046394 144 GT------------MLCHQGPVSALAFHPN-----GHLMATS-GKDCKIKIWDLRK 181 (378)
Q Consensus 144 ~~------------~~~h~~~v~~~~~sp~-----g~~l~t~-~~d~~i~iwd~~~ 181 (378)
-. +.+|.++|.++.|--+ |.+++++ ..+..+.+|-+..
T Consensus 166 ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 166 IKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 44 8899999999999876 6776654 3455677886654
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.1e-08 Score=59.77 Aligned_cols=39 Identities=8% Similarity=0.197 Sum_probs=36.6
Q ss_pred ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Q 046394 35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN 73 (378)
Q Consensus 35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd 73 (378)
++.+..+.+|...|++|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356889999999999999999999999999999999997
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=1.3e-05 Score=81.80 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=60.6
Q ss_pred eccceeeeeecccceeeEEeec-C-------------CCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEeeccC-
Q 046394 22 KQEAIAREVDILSSRNQYDIML-P-------------ELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTELHCSKEH- 85 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~-~-------------~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~- 85 (378)
...+.|.++|... ..+..+.. . -..+..++++++++.|+++.. ++.|+++|..+..+.++.+.
T Consensus 587 s~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G 665 (1057)
T PLN02919 587 SNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNG 665 (1057)
T ss_pred CCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccC
Confidence 3467788888754 33333322 1 123689999999887776654 56799999766666655321
Q ss_pred -----------------CCeeEEEE------EEEEEeCCCeEEEEEcCCCcE
Q 046394 86 -----------------GEVLKLQF------LLASINKLGQLRYQNVTMGEI 114 (378)
Q Consensus 86 -----------------~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~ 114 (378)
..+..++| ++++.+.++.|++||..++..
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 12355666 667777788999999877654
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=1.3e-05 Score=70.79 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=127.0
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecC--CC-----C--ce---EE-EEcC-CCCEEEEEeCCCcEEEEeCCCCeEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLP--EL-----G--PY---TL-DFTS-SGRYMAAAGCKGYPYFYNRDGTELH 80 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~--~~-----~--v~---~~-~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~ 80 (378)
..+.+.++..+-|.++|..+-.. ..+... .. . +. -+ .|++ +|.+++..|. |...|.+..+....
T Consensus 277 DGkrIvFq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVFQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEEecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence 45677788889999999876543 222211 00 0 11 11 2443 6888888875 67888886665555
Q ss_pred eeccCCCeeEEEE-----EEEEEeCCC-eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394 81 CSKEHGEVLKLQF-----LLASINKLG-QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------- 145 (378)
Q Consensus 81 ~~~~~~~~~~l~~-----~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------- 145 (378)
.+....++.-..+ -++.|..|| .+-|+|..+++. ..+...-+.|.++..+|+|+.++++.....
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 5544444433333 677788888 899999987764 445566789999999999999998887666
Q ss_pred -----eeecCCCEEEEEEecCCCEEEEEECCC----eEEEEEcCCceeeeee--cCCceEEEEecCCC
Q 046394 146 -----MLCHQGPVSALAFHPNGHLMATSGKDC----KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS 202 (378)
Q Consensus 146 -----~~~h~~~v~~~~~sp~g~~l~t~~~d~----~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~ 202 (378)
-....+-|+.++|||+++++|-+--+| .|+++|+..++....- .+.--+.+|.|||+
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence 223446789999999999999776555 7999999887765443 34445566777766
No 270
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=3e-06 Score=77.73 Aligned_cols=176 Identities=13% Similarity=-0.054 Sum_probs=104.4
Q ss_pred CcEEEEeCCCCeEEeeccCCCeeEEEE------EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEE
Q 046394 67 GYPYFYNRDGTELHCSKEHGEVLKLQF------LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVV 137 (378)
Q Consensus 67 g~i~iwd~~~~~~~~~~~~~~~~~l~~------~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 137 (378)
..|.+-|.+|...+.+..........| .++..+. +..|.++|+.+++..... ...+......|+|||+.+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEE
Confidence 367777777776555444332266667 2333222 467999999888765443 345666778899999866
Q ss_pred EEE-cCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CC--eEEEEEcCCceeeeee-cCCceEEEE
Q 046394 138 SLG-HSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DC--KIKIWDLRKYEVLQTL-PGHAKTLDF 197 (378)
Q Consensus 138 ~~~-~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~--~i~iwd~~~~~~~~~~-~~~i~~~~~ 197 (378)
+.. +.++. +..+.+......|+|||+.|+-.+. .+ .|.+.|+.+++..... .+. ....|
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~ 326 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSV 326 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceE
Confidence 544 33333 3333333445689999998776663 23 6888898877664333 222 23589
Q ss_pred ecCCCccccCCCCC--------ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCC
Q 046394 198 SRKDSGDFSGSHNY--------NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 198 sp~g~~~~~~~~~~--------~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
||||...++..... ..+...... .........|+|||+.++.....+
T Consensus 327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccC
Confidence 99999754432211 122222210 011233588999999887665543
No 271
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=1.6e-07 Score=87.07 Aligned_cols=126 Identities=15% Similarity=0.120 Sum_probs=100.1
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC------------CEEEEEeCCCcEEEEe-CCCCeEEe
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG------------RYMAAAGCKGYPYFYN-RDGTELHC 81 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g------------~~l~~~~~dg~i~iwd-~~~~~~~~ 81 (378)
....+.+..-..|-+.|.-+.+.+..+..|...|+.+.|.|-. -.||++...|.|.+|| ..+..+..
T Consensus 25 ~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~ 104 (1062)
T KOG1912|consen 25 PSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW 104 (1062)
T ss_pred ccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh
Confidence 3456677778889999999999999999999999999998732 1477788899999999 45555666
Q ss_pred eccCCCe-eEEEE---------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEE
Q 046394 82 SKEHGEV-LKLQF---------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLG 140 (378)
Q Consensus 82 ~~~~~~~-~~l~~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~ 140 (378)
+..|..+ ..++| +++.-....+|.+|+..+|+.+...........|+.+.|-. +.+...
T Consensus 105 l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 105 LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 7777766 88888 66666777899999999999999888777778888888844 444433
No 272
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.77 E-value=5.8e-06 Score=70.49 Aligned_cols=180 Identities=16% Similarity=0.161 Sum_probs=123.2
Q ss_pred eccceeeeeecccceeeEEeecCCCCce--EEEEcCCCCEEEEEeC-----CCcEEEEeCC--CCeEEeeccCC-CeeEE
Q 046394 22 KQEAIAREVDILSSRNQYDIMLPELGPY--TLDFTSSGRYMAAAGC-----KGYPYFYNRD--GTELHCSKEHG-EVLKL 91 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~--~~~~sp~g~~l~~~~~-----dg~i~iwd~~--~~~~~~~~~~~-~~~~l 91 (378)
-......+||..+++....+....+.-+ .-+|||||++|++.-. .|.|-|||.. ...+..+..|. ++..+
T Consensus 25 RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel 104 (305)
T PF07433_consen 25 RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHEL 104 (305)
T ss_pred CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhE
Confidence 4467788899999998877766444333 5789999999998633 6799999965 34455565554 33555
Q ss_pred EE-----EEEEE------------------eCCCeEEEEEcCCCcEEEEEec----CCCCeeEEEEcCCCCEEEEEcCCC
Q 046394 92 QF-----LLASI------------------NKLGQLRYQNVTMGEIVGNFWT----GLGRTDVIRVNPFNGVVSLGHSGG 144 (378)
Q Consensus 92 ~~-----~l~s~------------------~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~ 144 (378)
.+ .|+.+ ..+..+.+.|..+|+.+..... |..++..++++++|..++..-..+
T Consensus 105 ~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 105 LLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred EEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence 55 22222 2235677788888988776433 667899999999998877766555
Q ss_pred e--------------------------eeecCCCEEEEEEecCCCEEEE-EECCCeEEEEEcCCceeeeee-cCCceEEE
Q 046394 145 T--------------------------MLCHQGPVSALAFHPNGHLMAT-SGKDCKIKIWDLRKYEVLQTL-PGHAKTLD 196 (378)
Q Consensus 145 ~--------------------------~~~h~~~v~~~~~sp~g~~l~t-~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~ 196 (378)
. ...-.+.+-+|+++++|.++++ +-..+.+.+||..++.++... -..++.++
T Consensus 185 ~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva 264 (305)
T PF07433_consen 185 DPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVA 264 (305)
T ss_pred CCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeee
Confidence 4 1233467899999999987754 447779999999998876655 23334444
Q ss_pred EecCC
Q 046394 197 FSRKD 201 (378)
Q Consensus 197 ~sp~g 201 (378)
-.+++
T Consensus 265 ~~~~~ 269 (305)
T PF07433_consen 265 PTDDG 269 (305)
T ss_pred ecCCc
Confidence 33333
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=1e-07 Score=87.66 Aligned_cols=196 Identities=8% Similarity=0.080 Sum_probs=132.9
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----------------CeEEeeccCCCe-eEEEE-----EEEEEeCCCe
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----------------TELHCSKEHGEV-LKLQF-----LLASINKLGQ 103 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~ 103 (378)
....|+.|+.+..+||+||.||-++|..+.. ..-+++.+|.+. ..+.| .+-|+..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 4467999999999999999999999987321 012457889876 77888 7888888999
Q ss_pred EEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe----------eeec---CCCEEEEEEecCCCEEEEE
Q 046394 104 LRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT----------MLCH---QGPVSALAFHPNGHLMATS 168 (378)
Q Consensus 104 i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~----------~~~h---~~~v~~~~~sp~g~~l~t~ 168 (378)
|.+|-+-.|+....+. ...+.|.+++|+.||+.++....||. +.+- ......+.|++|...++.+
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhh
Confidence 9999987776433322 23467889999999998887777776 1110 1123468899999988888
Q ss_pred ECCCeEEEEEcCCc-------eeeeee-------cCCceEEEEec------------------CCCc-cccCCCCCceEE
Q 046394 169 GKDCKIKIWDLRKY-------EVLQTL-------PGHAKTLDFSR------------------KDSG-DFSGSHNYNRYM 215 (378)
Q Consensus 169 ~~d~~i~iwd~~~~-------~~~~~~-------~~~i~~~~~sp------------------~g~~-~~~~~~~~~~~~ 215 (378)
-..|.+.+||.... .+.... +..+..+.|.. +|.. .+.+..+..|+.
T Consensus 175 ~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv 254 (1189)
T KOG2041|consen 175 KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV 254 (1189)
T ss_pred hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE
Confidence 88999999997421 111111 22344444432 1111 222333444443
Q ss_pred EeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394 216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
.- .+..|....|+++|.+||+++.+.
T Consensus 255 ~d---tgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 255 VD---TGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred Ee---cccEeecceecCCCcEEEEccCcc
Confidence 33 346788999999999999987664
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=6.9e-08 Score=86.20 Aligned_cols=146 Identities=15% Similarity=0.097 Sum_probs=107.8
Q ss_pred eEEEeccceeeeeecc-------cceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-c--cCC
Q 046394 18 TWRIKQEAIAREVDIL-------SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-K--EHG 86 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~-------~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~--~~~ 86 (378)
+++.+.|.++++|.+. |..+.+++..|..+|..+.|-.+-++++++ ||.|.+|| .-|..+..+ . .|.
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~ 827 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG 827 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccC
Confidence 3444555566666553 445789999999999999999888888765 88999999 566655422 2 222
Q ss_pred Ce-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEE
Q 046394 87 EV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAF 158 (378)
Q Consensus 87 ~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~ 158 (378)
.. .-.+. +++.|+...+|+++|.+.+..+..++....+ +.++.+.+++.
T Consensus 828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-----------------------~Pna~~R~iaV 884 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-----------------------GPNALTRAIAV 884 (1034)
T ss_pred CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC-----------------------CCchheeEEEe
Confidence 22 22222 5666688899999999998877776643221 44567889999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 159 HPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 159 sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
.|.|++++.+-..|+|.+.|.++|..+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 999999999999999999999999988765
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=5.6e-08 Score=89.54 Aligned_cols=216 Identities=12% Similarity=0.090 Sum_probs=145.8
Q ss_pred CceEEEEcCCC--CEEEEEeCCCcEEEEeC----CCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC-
Q 046394 47 GPYTLDFTSSG--RYMAAAGCKGYPYFYNR----DGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG- 112 (378)
Q Consensus 47 ~v~~~~~sp~g--~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~- 112 (378)
.|-...|+|.. .+-++......-.+|++ +...-..+.+|... +.+.| .+++++.|..+..||+++.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 35577888754 34445545556778993 22334567788876 99999 9999999999999999875
Q ss_pred cEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEE
Q 046394 113 EIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKI 176 (378)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~i 176 (378)
.++..+.........++|+... ..+|+...... +.+|...|..++|+. -...+.+++.|++|+.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 4566666555667788888644 44444433332 667777888888876 3345889999999999
Q ss_pred EEcCCcee--eeee--cCCceEEEEecCCCc---------------------cccCC-CCCceEEEeeccCCcceeeeEE
Q 046394 177 WDLRKYEV--LQTL--PGHAKTLDFSRKDSG---------------------DFSGS-HNYNRYMGYSMVKGYQIGKVSF 230 (378)
Q Consensus 177 wd~~~~~~--~~~~--~~~i~~~~~sp~g~~---------------------~~~~~-~~~~~~~~~~~~~~~~v~~~~~ 230 (378)
||...... -++. ..++....+-|-|.- ..|+. ....+++.+.| |...|....|
T Consensus 229 w~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~D~V~eFlW 307 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HDDVVLEFLW 307 (1081)
T ss_pred ecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cchHHHHHhh
Confidence 99875433 2333 356666666664431 22332 24567888888 9998988888
Q ss_pred cCCCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394 231 RPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP 265 (378)
Q Consensus 231 sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~ 265 (378)
-..+.. .|+.|..-.-+++-|.|..+++|.+..
T Consensus 308 R~r~e~--~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKEC--DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccc--cCCCCccceeEEEeecCCceEeeeccH
Confidence 655432 233333335678889999999997644
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.72 E-value=1.9e-05 Score=72.03 Aligned_cols=231 Identities=16% Similarity=0.110 Sum_probs=133.1
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQ 92 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~ 92 (378)
.+..|....++.+..+|..+++.++..........+... ++..+++++.+|.++.+|. +|..+........+ ....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 456677777889999999999999887765432223333 4667888889999999995 78887766544433 2222
Q ss_pred E---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCe-----eEEEEcCCCCEEEEEcCCCee---eecCCCE-E------
Q 046394 93 F---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRT-----DVIRVNPFNGVVSLGHSGGTM---LCHQGPV-S------ 154 (378)
Q Consensus 93 ~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d~~~---~~h~~~v-~------ 154 (378)
. .++.++.++.|..||..+|+.+..+......+ .+.... +..++.+..++.+ ....+.+ .
T Consensus 143 v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 143 VANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred EECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 2 66667789999999999999887765432211 111111 2345555555541 1111110 0
Q ss_pred -----------EEEEec--CCCEEEEEECCCeEEEEEcCCceeeeee-cCCce-------E-EEEecCCCccccCCCCCc
Q 046394 155 -----------ALAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAK-------T-LDFSRKDSGDFSGSHNYN 212 (378)
Q Consensus 155 -----------~~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~-------~-~~~sp~g~~~~~~~~~~~ 212 (378)
.+.-+| .+..+++++.+|.+..||..+|+.+... ..... . ...+.+|....++..++.
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence 011112 3457788888999999999999877655 11111 1 122345555555554544
Q ss_pred eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394 213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP 251 (378)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~ 251 (378)
.+-............... .+..|++++.+|.+..+..
T Consensus 301 ~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 433221101111111111 3567777777776665543
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.72 E-value=8.9e-08 Score=80.62 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=66.3
Q ss_pred cccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEeeccCCCe-eEEEE-----EEEEEeCCCe
Q 046394 32 ILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCSKEHGEV-LKLQF-----LLASINKLGQ 103 (378)
Q Consensus 32 ~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-~~l~~-----~l~s~~~d~~ 103 (378)
......+..+.+|.+.+++++|.|....|++|..|..|.+||+-+. ....+.+|..- ..+.+ .+.+++.||.
T Consensus 184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 3455677889999999999999999999999999999999996543 44567777764 65555 8999999999
Q ss_pred EEEEEcCC
Q 046394 104 LRYQNVTM 111 (378)
Q Consensus 104 i~iwd~~~ 111 (378)
|.+||+..
T Consensus 264 i~~w~mn~ 271 (404)
T KOG1409|consen 264 IVVWNMNV 271 (404)
T ss_pred EEEEeccc
Confidence 99999864
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=4.4e-07 Score=84.66 Aligned_cols=150 Identities=16% Similarity=0.232 Sum_probs=114.5
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-LLASINKLGQLRYQNVTMGEIVGNFWTGLGR 124 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 124 (378)
..++|++++ +++|+.|..+|.|++++..+.. .+...|... ...= +++||+.||+|.|-.+-+.+...++. ...+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rp 114 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRP 114 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc-ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCc
Confidence 467788877 6799999999999999988877 444445332 1111 89999999999999998888776664 3478
Q ss_pred eeEEEEcCC-----CCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394 125 TDVIRVNPF-----NGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV 184 (378)
Q Consensus 125 v~~~~~s~~-----~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~ 184 (378)
+.+++++|+ .+.+++|+.-|. +....|+|.++.|. |+++|-++.+| |+|||+.+.+.
T Consensus 115 iksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 115 IKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred ceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence 999999998 457888887765 44557899999996 77999998887 89999999888
Q ss_pred eeee---c------CCceEEEEecCCCc
Q 046394 185 LQTL---P------GHAKTLDFSRKDSG 203 (378)
Q Consensus 185 ~~~~---~------~~i~~~~~sp~g~~ 203 (378)
+..+ + .....+.|.++...
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~~~~L 219 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQDEDRL 219 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecCCCeE
Confidence 7776 1 12355677766553
No 279
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=5.8e-08 Score=56.61 Aligned_cols=32 Identities=28% Similarity=0.783 Sum_probs=30.5
Q ss_pred eecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
.+|.+.|.+|+|+|++++|++++.|++|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 48899999999999999999999999999997
No 280
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.5e-08 Score=95.00 Aligned_cols=175 Identities=13% Similarity=0.211 Sum_probs=123.8
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC--cEEEEeC--CCCeEEeeccCCCeeE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG--YPYFYNR--DGTELHCSKEHGEVLK 90 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg--~i~iwd~--~~~~~~~~~~~~~~~~ 90 (378)
.+..+.....|.|+++++.+|.......+|..+|+-+.-|.+|..+++.+... -..+|+. .+.+.+++... .+
T Consensus 1113 ~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed---~~ 1189 (1516)
T KOG1832|consen 1113 TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED---KA 1189 (1516)
T ss_pred CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccccc---ce
Confidence 44455567799999999999999999999999999999999998777665432 5788994 45666666544 44
Q ss_pred EEE-------EEEEEeCCCeEEEEEcCCCcEEEEEec----CCCCeeEEEEcCCCCEEEEEcCCCe------------ee
Q 046394 91 LQF-------LLASINKLGQLRYQNVTMGEIVGNFWT----GLGRTDVIRVNPFNGVVSLGHSGGT------------ML 147 (378)
Q Consensus 91 l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~------------~~ 147 (378)
+.| .+-+++ ....+||+.++.++.++-. ..-.-++..|||+..+++- ||. +.
T Consensus 1190 vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dGvLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1190 VKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DGVLWDVRIPEAIHRFD 1264 (1516)
T ss_pred eehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---CceeeeeccHHHHhhhh
Confidence 455 333333 4578999999887766322 1223478899999987763 333 11
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeec-CCceEEEEecCCCc
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLP-GHAKTLDFSRKDSG 203 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~i~~~~~sp~g~~ 203 (378)
..+.. ..=.|+|+|+.++.-+ -|||+++.+++++.+ -.-+.+.|+..|..
T Consensus 1265 ~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1265 QFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQCAVTFNSTGDV 1315 (1516)
T ss_pred hheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCccccceEEEeccCccc
Confidence 11111 1235899999888776 589999999998883 45678899988874
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.69 E-value=5.5e-07 Score=75.94 Aligned_cols=183 Identities=11% Similarity=0.078 Sum_probs=124.3
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CC-CCeEEeecc--CCCeeEEEE-----EEEEEeCCCeEEEEE
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RD-GTELHCSKE--HGEVLKLQF-----LLASINKLGQLRYQN 108 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~-~~~~~~~~~--~~~~~~l~~-----~l~s~~~d~~i~iwd 108 (378)
...+.+|...++....-|-..-+++.+.|.+++||- .+ ++.-..+.. ...++++.+ .|+.+-..|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 455778888888887878777899999999999997 32 333223222 223377777 778888888888776
Q ss_pred cCC----CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------------------------------
Q 046394 109 VTM----GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------------------------- 145 (378)
Q Consensus 109 ~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------------------------- 145 (378)
+.. -..++....|...+..+-|+-...++++.+.|..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq 176 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ 176 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence 542 2334455567778888888877777777766655
Q ss_pred ----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCC
Q 046394 146 ----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSH 209 (378)
Q Consensus 146 ----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~ 209 (378)
+.+|.+.+++++|.|....|.+|..|..|.+||+.-.+
T Consensus 177 vt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-------------------------- 230 (404)
T KOG1409|consen 177 ITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-------------------------- 230 (404)
T ss_pred eEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--------------------------
Confidence 56677777777777777777777777777777775321
Q ss_pred CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394 210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL 249 (378)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~ 249 (378)
.......+ |...|..+..-+.-+.|.+++.||.+.+|
T Consensus 231 --g~~~el~g-h~~kV~~l~~~~~t~~l~S~~edg~i~~w 267 (404)
T KOG1409|consen 231 --GTAYELQG-HNDKVQALSYAQHTRQLISCGEDGGIVVW 267 (404)
T ss_pred --ceeeeecc-chhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence 12233444 66678888877777666666666655444
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=1.3e-06 Score=71.42 Aligned_cols=143 Identities=14% Similarity=0.169 Sum_probs=95.4
Q ss_pred eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEe-ecc-CCCe-eEEEE---
Q 046394 22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD--GTELHC-SKE-HGEV-LKLQF--- 93 (378)
Q Consensus 22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~--~~~~~~-~~~-~~~~-~~l~~--- 93 (378)
+.|.++++.++..+...+.+....-.+.++++|+|++++++.+....|..|.++ +..+.. ..+ ..+- .+..|
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 345556666655554444444333347899999999999999999999999853 333322 222 2222 66777
Q ss_pred --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCE--EEEEE
Q 046394 94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHL--MATSG 169 (378)
Q Consensus 94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~--l~t~~ 169 (378)
.+|++..||++.|||++.-........... ..|++.+..+.|+|-|.. |...-
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr-----------------------p~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTR-----------------------PHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccC-----------------------CCCCCceEEEEecCCCcceEEEEec
Confidence 999999999999999987543332222111 258899999999985543 44444
Q ss_pred CCCeEEEEEcCCceeeee
Q 046394 170 KDCKIKIWDLRKYEVLQT 187 (378)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~ 187 (378)
.=+.+.+-|++++.-...
T Consensus 272 hfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 272 HFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred CcceEEEEEcccCceeeE
Confidence 456799999999765443
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=2.8e-05 Score=66.52 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=112.3
Q ss_pred CCcEEEEeCCC--CeE---EeeccCCCeeEEEE-----EEEEEeC---CCeEEEEEcCC--CcE--EEEEecCCCCeeEE
Q 046394 66 KGYPYFYNRDG--TEL---HCSKEHGEVLKLQF-----LLASINK---LGQLRYQNVTM--GEI--VGNFWTGLGRTDVI 128 (378)
Q Consensus 66 dg~i~iwd~~~--~~~---~~~~~~~~~~~l~~-----~l~s~~~---d~~i~iwd~~~--~~~--~~~~~~~~~~v~~~ 128 (378)
+..|++|+++. ..+ ........++-|+| .|.++.. +|.|-.|.+.. |.. +........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45699999542 122 22222333477777 4555433 56777776654 443 22222233445889
Q ss_pred EEcCCCCEEEEEcCCCe------------------eeecCCC----------EEEEEEecCCCEEEEEEC-CCeEEEEEc
Q 046394 129 RVNPFNGVVSLGHSGGT------------------MLCHQGP----------VSALAFHPNGHLMATSGK-DCKIKIWDL 179 (378)
Q Consensus 129 ~~s~~~~~l~~~~~d~~------------------~~~h~~~----------v~~~~~sp~g~~l~t~~~-d~~i~iwd~ 179 (378)
+++++|++++++..... +..|.+. +.+..+.|++++|+++.. -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999877655 3445555 888999999999988763 346999999
Q ss_pred CCceeeeee------cCCceEEEEecCCCc-----------cccCCCC----CceEEEeec-----cCCcceeeeEEcCC
Q 046394 180 RKYEVLQTL------PGHAKTLDFSRKDSG-----------DFSGSHN----YNRYMGYSM-----VKGYQIGKVSFRPY 233 (378)
Q Consensus 180 ~~~~~~~~~------~~~i~~~~~sp~g~~-----------~~~~~~~----~~~~~~~~~-----~~~~~v~~~~~sp~ 233 (378)
..|.+...- .....-|.|+|+|++ .+|.... ...++.+.. ........+..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 977663322 467899999999996 2332222 111221111 12345678899999
Q ss_pred CCeEEEecC
Q 046394 234 EDVLGIGHS 242 (378)
Q Consensus 234 g~~l~~~~~ 242 (378)
|++|.++..
T Consensus 255 GrFLYasNR 263 (346)
T COG2706 255 GRFLYASNR 263 (346)
T ss_pred CCEEEEecC
Confidence 999988764
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.62 E-value=7.8e-06 Score=81.78 Aligned_cols=160 Identities=12% Similarity=0.108 Sum_probs=106.1
Q ss_pred eeEEEE-----EEEEEeCCCeEEEE----EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394 88 VLKLQF-----LLASINKLGQLRYQ----NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------- 145 (378)
Q Consensus 88 ~~~l~~-----~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------- 145 (378)
+.++.| .++.+..+|.|.+. |..+.. +.....-...|.+++||||+..|+..+.++.
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E 156 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE 156 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence 366766 56667778888888 544332 2222233578999999999999999988877
Q ss_pred ------------------------eee------------------------cCCCEEEEEEecCCCEEEEEEC---C---
Q 046394 146 ------------------------MLC------------------------HQGPVSALAFHPNGHLMATSGK---D--- 171 (378)
Q Consensus 146 ------------------------~~~------------------------h~~~v~~~~~sp~g~~l~t~~~---d--- 171 (378)
+.| +...-..|+|-.||.|||+.+. +
T Consensus 157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR 236 (928)
T ss_pred eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence 111 1223457889999999998775 2
Q ss_pred CeEEEEEcCCceeeeee---cCCceEEEEecCCCccccC------------CCCCceEEEeec---cCCcceeeeEEcCC
Q 046394 172 CKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSG------------SHNYNRYMGYSM---VKGYQIGKVSFRPY 233 (378)
Q Consensus 172 ~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~------------~~~~~~~~~~~~---~~~~~v~~~~~sp~ 233 (378)
..|+||+-. |.+..+- .+--.+++|.|.|...... -+.+.....+.. +....|..+.|++|
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 479999864 6655444 3455788999999852111 112222222222 13567999999999
Q ss_pred CCeEEEecCCCeEEEEE
Q 046394 234 EDVLGIGHSMGVSGILI 250 (378)
Q Consensus 234 g~~l~~~~~~g~~~~~~ 250 (378)
+.+||+...+. +.+|.
T Consensus 316 s~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 316 SEILAVWLEDR-VQLWT 331 (928)
T ss_pred CCEEEEEecCC-ceEEE
Confidence 99999977666 45443
No 285
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=9.5e-07 Score=83.55 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=107.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEeeccCCC--eeEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEc
Q 046394 57 GRYMAAAGCKGYPYFYNRDGTELHCSKEHGE--VLKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVN 131 (378)
Q Consensus 57 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 131 (378)
+..++.|+-...+..+|..+........-.. +.-|.. ++.+|...|+|.+-|..+.+.+.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------------ 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD------------ 214 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee------------
Confidence 3456666666677777765555444333222 455555 78888888999999998888888887
Q ss_pred CCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEEC---------CCeEEEEEcCCceeeeee--c----------C
Q 046394 132 PFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGK---------DCKIKIWDLRKYEVLQTL--P----------G 190 (378)
Q Consensus 132 ~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~---------d~~i~iwd~~~~~~~~~~--~----------~ 190 (378)
+|.+.|.++.. .|+.|+|||. |..|+|||+|+.+.+.-+ + .
T Consensus 215 ----------------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps 276 (1118)
T KOG1275|consen 215 ----------------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS 276 (1118)
T ss_pred ----------------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc
Confidence 45555555444 4777777775 557999999987765544 1 1
Q ss_pred Cc-eEEEEecCCCccccCCC---CC-ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 191 HA-KTLDFSRKDSGDFSGSH---NY-NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 191 ~i-~~~~~sp~g~~~~~~~~---~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
-. .-+..|..|...+.+.. .. ........ .+..+..+++|++|+.||.|..+|.+.+|.
T Consensus 277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceEEEEecccceeeccccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11 22344566776555421 11 11222222 455699999999999999999999999887
No 286
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=2.7e-06 Score=71.89 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=121.0
Q ss_pred cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEE--eeccCC-----Ce-eEEEE------EEEEEeCCCeEEE
Q 046394 43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DGTELH--CSKEHG-----EV-LKLQF------LLASINKLGQLRY 106 (378)
Q Consensus 43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~~--~~~~~~-----~~-~~l~~------~l~s~~~d~~i~i 106 (378)
+|+..|.+|.++.|+..++++ .|=.|.+|++ ..+... -++.+. .+ ++..| .|+-++..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 577789999999999888887 4668999993 333322 223222 24 66677 7777888899999
Q ss_pred EEcCCCcE----EEEEe------------cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeec-------
Q 046394 107 QNVTMGEI----VGNFW------------TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCH------- 149 (378)
Q Consensus 107 wd~~~~~~----~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h------- 149 (378)
.|++.... ...+. .--..|..+.|+++|+++++-..... +.-|
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHH
Confidence 99985321 11111 11246889999999999998765443 1111
Q ss_pred -----CCCE---EEEEEecCCCEEEEEECCCeEEEEEcCCcee-eeeec--------CCceEEE-EecCCCccccCCCCC
Q 046394 150 -----QGPV---SALAFHPNGHLMATSGKDCKIKIWDLRKYEV-LQTLP--------GHAKTLD-FSRKDSGDFSGSHNY 211 (378)
Q Consensus 150 -----~~~v---~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~-~~~~~--------~~i~~~~-~sp~g~~~~~~~~~~ 211 (378)
+..| ..++|+.++.+++|||..+.+++|++..|.. ..+++ ..+..+. .++.|...-
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~------ 394 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKR------ 394 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccc------
Confidence 1222 4578999999999999999999999765543 22331 1111111 111121100
Q ss_pred ceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394 212 NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
.-+..-.......|...+|+|....+|++..+.
T Consensus 395 ~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn 427 (433)
T KOG1354|consen 395 DEISVDALDFRKKILHTAWHPKENSIAVAATNN 427 (433)
T ss_pred cccccchhhhhhHHHhhccCCccceeeeeecCc
Confidence 000000011234577889999999999888875
No 287
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=4.3e-07 Score=79.92 Aligned_cols=177 Identities=15% Similarity=0.129 Sum_probs=122.9
Q ss_pred EeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCC--CEEEEEcCCCe-----
Q 046394 80 HCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFN--GVVSLGHSGGT----- 145 (378)
Q Consensus 80 ~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~d~~----- 145 (378)
..|..|.+. +.+.| .+++++.|..|.+||+..++....|. +|...|-...|-|.. ..+++.+.||.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 456778887 88999 99999999999999999988877765 466666666777754 57777777776
Q ss_pred ------------eeecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeee-----c-C---CceEEEEecCCCc
Q 046394 146 ------------MLCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTL-----P-G---HAKTLDFSRKDSG 203 (378)
Q Consensus 146 ------------~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~-----~-~---~i~~~~~sp~g~~ 203 (378)
+..|.++|.-++.-|+. .-|.+++.|+.+.-+|++...+...+ . . ...+++..|...+
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 56799999999999954 45999999999999999987664444 1 1 3467777776553
Q ss_pred -----------cccCCCC------CceEEEeec-----cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCc
Q 046394 204 -----------DFSGSHN------YNRYMGYSM-----VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEP 256 (378)
Q Consensus 204 -----------~~~~~~~------~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~ 256 (378)
.+++.+. ..++..+.. .....|+++.|+.++.-|.++..|-.+.++-+.-+++
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 2222111 011111111 1234599999998876666666665556665444454
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.60 E-value=2.8e-05 Score=79.38 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=93.8
Q ss_pred CceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccC----------------CCeeEEEE------EEEEEeCCCe
Q 046394 47 GPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEH----------------GEVLKLQF------LLASINKLGQ 103 (378)
Q Consensus 47 ~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------~~~~~l~~------~l~s~~~d~~ 103 (378)
.+..++|+| ++..+++.+.++.|++||..+..+..+.+. ..+..++| ++++.+.++.
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 456899999 455566666788999999655444433221 11245666 5566667899
Q ss_pred EEEEEcCCCcEEEEEec---------------------CCCCeeEEEEcCCCCEEEEEcCCCe-------------eee-
Q 046394 104 LRYQNVTMGEIVGNFWT---------------------GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLC- 148 (378)
Q Consensus 104 i~iwd~~~~~~~~~~~~---------------------~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~- 148 (378)
|++||+.++.......+ .......++++++|.++++-+.++. +.+
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 99999987653211100 0123468899999987777666655 111
Q ss_pred -------------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394 149 -------------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV 184 (378)
Q Consensus 149 -------------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~ 184 (378)
.-.....|+++++|+.+++-+.++.|++||+.+++.
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 112467899999999999989999999999998765
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.60 E-value=1.1e-05 Score=71.20 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=120.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC----Ce------eEEEE----------EEEEEeCCCeEEEEEcCCCc
Q 046394 54 TSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG----EV------LKLQF----------LLASINKLGQLRYQNVTMGE 113 (378)
Q Consensus 54 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~------~~l~~----------~l~s~~~d~~i~iwd~~~~~ 113 (378)
+.||+.|+.. ..|.|++||.+...+..+...- .. .-+.| +++..|. |...|.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 4577766654 5678999997766655543220 00 11111 5555554 667777765554
Q ss_pred EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394 114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~ 179 (378)
.++. ++.+.|.-..+.-++.-++.|..||. +...-+.|.++..+|+|++++.+.....|.+.|+
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 4432 45667888888888888888988885 3445578999999999999999998889999999
Q ss_pred CCceeeee--e-cCCceEEEEecCCCccccCCCCC---ceEEEeeccCC----------cceeeeEEcCCCCeEEEe
Q 046394 180 RKYEVLQT--L-PGHAKTLDFSRKDSGDFSGSHNY---NRYMGYSMVKG----------YQIGKVSFRPYEDVLGIG 240 (378)
Q Consensus 180 ~~~~~~~~--~-~~~i~~~~~sp~g~~~~~~~~~~---~~~~~~~~~~~----------~~v~~~~~sp~g~~l~~~ 240 (378)
.++..... - .+-|+...|||++++..+.-..+ +.+..+.+ .+ ..=.+-+|.|||++|..-
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm-~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM-DGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec-CCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 99876322 2 47899999999999744433222 11222222 12 223456788999887543
No 290
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.59 E-value=6.5e-07 Score=90.30 Aligned_cols=142 Identities=22% Similarity=0.303 Sum_probs=88.5
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEe
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFH 159 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~s 159 (378)
+.+||+.||.+++|....++.+..+.. .+..|+.+.|+..|+.+.++..||. ...|+....++.|-
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeee
Confidence 889999999999999998888877764 2244455555555555444444444 22344444444443
Q ss_pred cCCCEEEEEE---CCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCe
Q 046394 160 PNGHLMATSG---KDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV 236 (378)
Q Consensus 160 p~g~~l~t~~---~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 236 (378)
. ..+++++ .++.+.+||..- ....-..+.. |...++++++-|..+.
T Consensus 2302 ~--s~~~tag~s~d~~n~~lwDtl~----------------------------~~~~s~v~~~-H~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLL----------------------------PPMNSLVHTC-HDGGATVLAYAPKHQL 2350 (2439)
T ss_pred e--hhhhccccCCCCCcccchhccc----------------------------Ccccceeeee-cCCCceEEEEcCcceE
Confidence 2 2333332 233444554321 1111122344 7777888888888888
Q ss_pred EEEecCCCeEE--------------------EEEcCCCCcccccccCCCc
Q 046394 237 LGIGHSMGVSG--------------------ILIPGSGEPNFDSWVANPF 266 (378)
Q Consensus 237 l~~~~~~g~~~--------------------~~~~~s~d~~i~~w~~~~~ 266 (378)
|.+|+.+|.+. ++++|+..++++||.++.+
T Consensus 2351 lisggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEecCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEcccc
Confidence 88888888666 4678899999999987654
No 291
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.58 E-value=8.7e-07 Score=73.24 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=104.4
Q ss_pred eEEEeccceeeeeecccc--eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC--CCCeEEe-eccCC-CeeE
Q 046394 18 TWRIKQEAIAREVDILSS--RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR--DGTELHC-SKEHG-EVLK 90 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~--~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~--~~~~~~~-~~~~~-~~~~ 90 (378)
.+.--.++.+.+.+.... +++..++.|....+...|+... +.+++||.||.+..||. .+..+.. .+-|. ++.+
T Consensus 136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S 215 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS 215 (339)
T ss_pred EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence 333334455555554444 3445788999999999998643 68999999999999994 3444332 33343 4455
Q ss_pred EEE------EEEEEeCCCeEEEEEcC-CCcEEEEEecCCCCeeEEEEcCCCC--EEEEEcCCCe----------------
Q 046394 91 LQF------LLASINKLGQLRYQNVT-MGEIVGNFWTGLGRTDVIRVNPFNG--VVSLGHSGGT---------------- 145 (378)
Q Consensus 91 l~~------~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~---------------- 145 (378)
+.- +++||+.|-.|++||.+ -++++..-.. .+.|+.+.++|.-. +++++-.+|.
T Consensus 216 I~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~ 294 (339)
T KOG0280|consen 216 IYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVL 294 (339)
T ss_pred EecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheee
Confidence 544 99999999999999998 4677655432 37899999998543 2333222332
Q ss_pred --eeecCCCEEEEEEecCCCEEEEEE-CCCeEE-EEEcCCc
Q 046394 146 --MLCHQGPVSALAFHPNGHLMATSG-KDCKIK-IWDLRKY 182 (378)
Q Consensus 146 --~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~-iwd~~~~ 182 (378)
...|.+-+..-.|.....+|+||+ .|..++ +|-.-++
T Consensus 295 ~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 295 PSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 334544455555544445688876 466644 6654443
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.57 E-value=7.4e-05 Score=63.74 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=110.9
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEec---
Q 046394 50 TLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWT--- 120 (378)
Q Consensus 50 ~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~--- 120 (378)
+++|.+ ++.++++-...+.|+.|+..+.....+.... +..+.+ .++.+...+ +.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence 678888 6666666666889999997777665554443 555555 555555544 55569988865444332
Q ss_pred --CCCCeeEEEEcCCCCEEEEEcCCC--------e------------eeecCCCEEEEEEecCCCEEE-EEECCCeEEEE
Q 046394 121 --GLGRTDVIRVNPFNGVVSLGHSGG--------T------------MLCHQGPVSALAFHPNGHLMA-TSGKDCKIKIW 177 (378)
Q Consensus 121 --~~~~v~~~~~s~~~~~l~~~~~d~--------~------------~~~h~~~v~~~~~sp~g~~l~-t~~~d~~i~iw 177 (378)
....++.+++.|+|++.++..... . +...-...+.|+|+|+++.|+ +-+..+.|..|
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEE
Confidence 345678899999999777654332 1 112233457899999998765 66678889999
Q ss_pred EcCC-ce-e-----eeee-cC--CceEEEEecCCCccccCC---------CCCceEEEeeccCCcceeeeEEc-CCCCeE
Q 046394 178 DLRK-YE-V-----LQTL-PG--HAKTLDFSRKDSGDFSGS---------HNYNRYMGYSMVKGYQIGKVSFR-PYEDVL 237 (378)
Q Consensus 178 d~~~-~~-~-----~~~~-~~--~i~~~~~sp~g~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l 237 (378)
|+.. +. . +..+ .. .+..+++..+|.+.+... ..+..+..+.. ....+++++|. |+...|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~-p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL-PVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE--SSSSEEEEEEESTTSSEE
T ss_pred eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC-CCCCEEEEEEECCCCCEE
Confidence 9863 22 1 2222 22 367888988887532211 12444444444 33467777773 454433
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.54 E-value=1.4e-05 Score=71.09 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-C-Ce-----------eeecCCCEEEEEEecCCCEEEEE
Q 046394 102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-G-GT-----------MLCHQGPVSALAFHPNGHLMATS 168 (378)
Q Consensus 102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~-----------~~~h~~~v~~~~~sp~g~~l~t~ 168 (378)
..++|+++....+.... .-.++|...+|+|.++.+++.+. . .. +......=..+.|+|.+++++.+
T Consensus 255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~a 333 (561)
T COG5354 255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFA 333 (561)
T ss_pred ceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEe
Confidence 34566666533322222 44689999999999988777652 1 11 23333444667899999999998
Q ss_pred ECC---CeEEEEEcCCcee-eeee-cCCceEEEEecCCCccccCCCCCc-----eEEEee--ccCCcceeeeEEcCCCCe
Q 046394 169 GKD---CKIKIWDLRKYEV-LQTL-PGHAKTLDFSRKDSGDFSGSHNYN-----RYMGYS--MVKGYQIGKVSFRPYEDV 236 (378)
Q Consensus 169 ~~d---~~i~iwd~~~~~~-~~~~-~~~i~~~~~sp~g~~~~~~~~~~~-----~~~~~~--~~~~~~v~~~~~sp~g~~ 236 (378)
+-| |.|-+||....-. +..+ ....+-+.|+|||.+...+..... .+..+. +......+.+.|.|.|++
T Consensus 334 gF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~ 413 (561)
T COG5354 334 GFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQY 413 (561)
T ss_pred cCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhhhhhhccccCCccc
Confidence 876 4799999876444 4355 556667789999998444322211 122222 112234678899999988
Q ss_pred EEEecCCC
Q 046394 237 LGIGHSMG 244 (378)
Q Consensus 237 l~~~~~~g 244 (378)
..+.+..+
T Consensus 414 ~ttsSs~~ 421 (561)
T COG5354 414 VTTSSSCP 421 (561)
T ss_pred ceeeccCC
Confidence 77666654
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.50 E-value=0.00017 Score=60.06 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=104.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeC-CC--CeEEeeccCC--Ce--eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394 51 LDFTSSGRYMAAAGCKGYPYFYNR-DG--TELHCSKEHG--EV--LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF 118 (378)
Q Consensus 51 ~~~sp~g~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~--~~--~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~ 118 (378)
++.+++|+.||+- .|..|.|-.. +. ..+.....+. .+ ..++| +||.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5678899988876 5667777662 21 2222222222 22 78888 899999999999999854 333333
Q ss_pred ecC-------CCCeeEEEEcCCC------CEEEEEcCCCe---------------------e-eecCCCEEEEEEecCCC
Q 046394 119 WTG-------LGRTDVIRVNPFN------GVVSLGHSGGT---------------------M-LCHQGPVSALAFHPNGH 163 (378)
Q Consensus 119 ~~~-------~~~v~~~~~s~~~------~~l~~~~~d~~---------------------~-~~h~~~v~~~~~sp~g~ 163 (378)
... ...|..+.|-+.. ..|++-...|. + ..+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 321 1334445454321 12332222222 2 12467899999999988
Q ss_pred EEEEEECCC-----------eEEEEEcCCceeeeee-cCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEc
Q 046394 164 LMATSGKDC-----------KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFR 231 (378)
Q Consensus 164 ~l~t~~~d~-----------~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 231 (378)
+|+.||... -+.-|-+-++.+-... ...-..+.-++. +..++.......+. ..+.....|..|..|
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~-~~~~~~~~~~~~fs-~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSK-RRGLLRIPSFKFFS-RQGQEQDGIFKMSLS 238 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccc-ccceeeccceeeee-ccccCCCceEEEEEC
Confidence 887776432 1334443333322211 000000000000 00111111111111 112245679999999
Q ss_pred CCCCeEEEecCCCeEEEEE
Q 046394 232 PYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 232 p~g~~l~~~~~~g~~~~~~ 250 (378)
|||..||+.+.+|.+.+|.
T Consensus 239 Pdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred CCCCEEEEEEcCCeEEEEe
Confidence 9999999999998766664
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=3.1e-06 Score=68.92 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=88.0
Q ss_pred EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEee-ccCCCeeEEEE----EEEEEeCCC------eEE
Q 046394 39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCS-KEHGEVLKLQF----LLASINKLG------QLR 105 (378)
Q Consensus 39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~-~~~~~~~~l~~----~l~s~~~d~------~i~ 105 (378)
+.+..|++.-.+-+.+--++-+++++.||.+.+++.+.. ..+.+ ..|.+..+.++ .++.++.-| ..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 334444444334444445677999999999999984331 00111 11222112222 333333333 344
Q ss_pred EEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEE
Q 046394 106 YQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATS 168 (378)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~ 168 (378)
+|+++..+....-......|.+++-+|.. .++++|+.+|. +..|+.++.-+-|+| ++..|+++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 55554322211111123448999999976 56777888887 778999999999999 78889999
Q ss_pred ECCCeEEEEEcCC
Q 046394 169 GKDCKIKIWDLRK 181 (378)
Q Consensus 169 ~~d~~i~iwd~~~ 181 (378)
+.||.+.-||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999865
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.7e-07 Score=78.06 Aligned_cols=253 Identities=9% Similarity=-0.040 Sum_probs=152.1
Q ss_pred eeeEEEeccceeeeeecccc---eeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-EEeeccCCCeeE
Q 046394 16 EKTWRIKQEAIAREVDILSS---RNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE-LHCSKEHGEVLK 90 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~---~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~~ 90 (378)
+-.+..+-|+.++.|--..- +-+..+..|-..+.+++.+-+|.++.+++. |..++++|+.... +..++-..-+-.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 33444455566666654321 223345667777889999999999999777 9999999943222 211111111112
Q ss_pred EEE----------EEEEEeCCCeEEEEEcCCCc--EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394 91 LQF----------LLASINKLGQLRYQNVTMGE--IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------- 145 (378)
Q Consensus 91 l~~----------~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------- 145 (378)
+.| +-++.-.++.+.++|-.... ....-..|..+|.++.++|.+..+.+....|.
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 222 33344467889999976543 23333457899999999999988887775554
Q ss_pred ----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCC
Q 046394 146 ----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSH 209 (378)
Q Consensus 146 ----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~ 209 (378)
+........++.|+|+|..+.+.+.|..|+++++.+|++++.+....+...+-|...+.+....
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 2233456789999999999999999999999999999998887222222222222222221111
Q ss_pred CCc---eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE-------EcCCCCcccccccCCCccc
Q 046394 210 NYN---RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL-------IPGSGEPNFDSWVANPFET 268 (378)
Q Consensus 210 ~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~-------~~~s~d~~i~~w~~~~~~~ 268 (378)
-+. .-..+.-+....-+.+.|...|.+|+.|+-=|+-.+- -.-+.|..+|+-.+..|+.
T Consensus 261 lgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~ 329 (558)
T KOG0882|consen 261 LGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQG 329 (558)
T ss_pred hhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhhhhhhHHHHhh
Confidence 111 1111111123345678899999999988877743221 1123344666655544443
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.47 E-value=3e-06 Score=80.31 Aligned_cols=152 Identities=13% Similarity=0.234 Sum_probs=111.7
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE---EEEEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---LLASI 98 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---~l~s~ 98 (378)
.+.+-.+|+.+.+.........++|.-|+. +++++.+|...|+|.+-| .+-+.++++.+|.+. .++.. +|++|
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitC 233 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITC 233 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEe
Confidence 445556788888877777766667777765 478999999999999999 456778999999987 77777 88888
Q ss_pred eC---------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe------------------eeecC
Q 046394 99 NK---------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT------------------MLCHQ 150 (378)
Q Consensus 99 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------------------~~~h~ 150 (378)
|. |.-|+|||++.-+.+.-+..+.++ .-+.|.|.- ..+++++..|. +....
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~ 312 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG 312 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence 75 456789999876544433322222 456677754 45565555554 12223
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
..+..+++|++|+.++.+..+|.|.+|-
T Consensus 313 s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 313 SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CcceeEEecCCCceEEEecccCcEeeec
Confidence 4488999999999999999999999997
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.44 E-value=0.00013 Score=66.57 Aligned_cols=227 Identities=10% Similarity=-0.039 Sum_probs=128.4
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceE-EEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe----
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYT-LDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV---- 88 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~-~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~---- 88 (378)
.+..|....++.+..+|..+++.++..... ..+.+ ... .+..++.++.+|.|+.|| .+|..+..+......
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 345565667889999999999998877654 22221 112 245677788899999999 477777665443321
Q ss_pred --eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCC----C---eeEEEEcC--CCCEEEEEcCCCeeee---cCC
Q 046394 89 --LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLG----R---TDVIRVNP--FNGVVSLGHSGGTMLC---HQG 151 (378)
Q Consensus 89 --~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~---v~~~~~s~--~~~~l~~~~~d~~~~~---h~~ 151 (378)
.+... .++.+..++.+..+|+.+|+.+........ . ...+.-+| .+..+++++.++.+.. ..+
T Consensus 182 ~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 182 GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 11122 667778889999999999987765432110 0 00011111 2445555555555111 111
Q ss_pred C-EEE------EEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cC-CceE--------EEEecCCCccccCCCCCc
Q 046394 152 P-VSA------LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PG-HAKT--------LDFSRKDSGDFSGSHNYN 212 (378)
Q Consensus 152 ~-v~~------~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~-~i~~--------~~~sp~g~~~~~~~~~~~ 212 (378)
. +.. ......+..++.++.||.|..+|..+++.+... .. ...+ +..+.+|...+++..+++
T Consensus 262 ~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 262 RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred cEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 1 000 011124667888889999999999999876544 11 1111 222445666666666676
Q ss_pred eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394 213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVS 246 (378)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~ 246 (378)
.+..+.. +...+..--...+ ..|.+++.+|.+
T Consensus 342 ~~~~~~~-~~~~~~~sp~~~~-~~l~v~~~dG~l 373 (377)
T TIGR03300 342 FVARLKT-DGSGIASPPVVVG-DGLLVQTRDGDL 373 (377)
T ss_pred EEEEEEc-CCCccccCCEEEC-CEEEEEeCCceE
Confidence 6666554 3322222211223 346666667643
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=7.5e-07 Score=74.23 Aligned_cols=133 Identities=13% Similarity=0.259 Sum_probs=78.9
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEeeccCCC-------------eeEEEE-------EEEEEe
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG------TELHCSKEHGE-------------VLKLQF-------LLASIN 99 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~-------------~~~l~~-------~l~s~~ 99 (378)
.-|+++.|...|.||++|...|.|.+|.... .....+++|.. +..+.| .++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 5688999999999999999999999998322 11233455532 245566 667778
Q ss_pred CCCeEEEEEcCCCcE--EE------EEec-CCCCeeEE------EEcCCCCEEEEEcCCCe-eeecCCCEEEEEEecCCC
Q 046394 100 KLGQLRYQNVTMGEI--VG------NFWT-GLGRTDVI------RVNPFNGVVSLGHSGGT-MLCHQGPVSALAFHPNGH 163 (378)
Q Consensus 100 ~d~~i~iwd~~~~~~--~~------~~~~-~~~~v~~~------~~s~~~~~l~~~~~d~~-~~~h~~~v~~~~~sp~g~ 163 (378)
.|.+|++|.+..... +. .+.. ..+++++. ..+... .++++..-+. -..|...|.++.|+.|..
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd-~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD-EIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc-eEEEeccceeccccceeEeeeeeecCchh
Confidence 999999998865421 11 0100 01111111 111111 1222222222 246777888888888877
Q ss_pred EEEEEECCCeEEEEEcC
Q 046394 164 LMATSGKDCKIKIWDLR 180 (378)
Q Consensus 164 ~l~t~~~d~~i~iwd~~ 180 (378)
.++++. |=.|.+|++.
T Consensus 186 t~lSaD-dLrINLWnl~ 201 (460)
T COG5170 186 TLLSAD-DLRINLWNLE 201 (460)
T ss_pred eeeecc-ceeeeecccc
Confidence 776654 5567777764
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.42 E-value=0.00033 Score=59.31 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=95.7
Q ss_pred cceeeeeecccceeeEEeecCC--CCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE---EEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPE--LGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF---LLA 96 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~--~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~---~l~ 96 (378)
++.|..||..+++.++...... ....+. ..+++..+++++.++.|+.||. +|..+..+...... ..... .++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 5788999999999999987622 222221 3335667888889999999994 88888877764443 32222 666
Q ss_pred EEeCCCeEEEEEcCCCcEEEEE-ecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394 97 SINKLGQLRYQNVTMGEIVGNF-WTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIK 175 (378)
Q Consensus 97 s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~ 175 (378)
.++.++.|..+|..+|+.+..+ ...... .. ....+.....+..++.+..++.|.
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~------------------------~~-~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPP------------------------AG-VRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCT------------------------CS-TB--SEEEEETTEEEEEETCSEEE
T ss_pred cccceeeeEecccCCcceeeeeccccccc------------------------cc-cccccCceEecCEEEEEeccCcEE
Confidence 6668889999999999998874 322110 00 111222222377888888899999
Q ss_pred EEEcCCceeeeee
Q 046394 176 IWDLRKYEVLQTL 188 (378)
Q Consensus 176 iwd~~~~~~~~~~ 188 (378)
.+|+.+|+.+..+
T Consensus 136 ~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 136 ALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 9999999998777
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.38 E-value=0.00041 Score=58.76 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=110.2
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-ccCC---C--
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-KEHG---E-- 87 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~~~~---~-- 87 (378)
....|....++.+..||..+++.++..... ..+.... ..++..+++++.++.|+.+| .+|..+... .... .
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 445555568999999999999999888873 3332221 22355677777888999999 788888874 3321 1
Q ss_pred e-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCe----------eEEEEcCCCCEEEEEcCCCe---eeecC
Q 046394 88 V-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRT----------DVIRVNPFNGVVSLGHSGGT---MLCHQ 150 (378)
Q Consensus 88 ~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v----------~~~~~s~~~~~l~~~~~d~~---~~~h~ 150 (378)
. ....+ .++.+..++.|..+|+.+|+.+.......... ..-....++ .+++++.++. +....
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~t 192 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLAT 192 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTT
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCC
Confidence 1 33444 67777789999999999999988887643221 122222234 6666665552 21111
Q ss_pred CC------EEEE-E-EecCCCEEEEEECCCeEEEEEcCCceeeee
Q 046394 151 GP------VSAL-A-FHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187 (378)
Q Consensus 151 ~~------v~~~-~-~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~ 187 (378)
+. +..+ . ..+++..|+.++.++.|.+||+.+|+.+.+
T Consensus 193 g~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 193 GEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 11 1111 1 345677888888999999999999987643
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.6e-05 Score=72.14 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=105.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe--eEEEE-----EEEEEeCCC-----eEEEEEcCCC------c
Q 046394 52 DFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV--LKLQF-----LLASINKLG-----QLRYQNVTMG------E 113 (378)
Q Consensus 52 ~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~l~~-----~l~s~~~d~-----~i~iwd~~~~------~ 113 (378)
+|++.+..++.|+.+|.|.+++..-..++.++++... ..+.. +|++.+.|+ .|+|||++.. +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 4567788999999999999999766666777666543 22211 566655543 5899998642 3
Q ss_pred EE---EEEe----cCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEE
Q 046394 114 IV---GNFW----TGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATS 168 (378)
Q Consensus 114 ~~---~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~ 168 (378)
++ +.+. ..+.++.+++.+.+-..+++|-.+|. .....++|+.+++..++..++-+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 34 2222 13567889999999999999999998 23345789999999988875545
Q ss_pred ECCCeEEEEEcCCcee-eeee---cCCceEEEEecCCC
Q 046394 169 GKDCKIKIWDLRKYEV-LQTL---PGHAKTLDFSRKDS 202 (378)
Q Consensus 169 ~~d~~i~iwd~~~~~~-~~~~---~~~i~~~~~sp~g~ 202 (378)
.....|.+|.+....+ ...+ +.+.+|.+|++...
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence 5556799999874333 3334 45678888877554
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.36 E-value=1.6e-06 Score=74.69 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=72.6
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEee-ccCCCe-eEEEE----EEEE
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCS-KEHGEV-LKLQF----LLAS 97 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~-~~l~~----~l~s 97 (378)
..+.+|.... .+...+-+|-.-++.++|+||+++|+++..|..|+|-... ...+..+ -||... ..++. .|++
T Consensus 132 ~~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS 210 (390)
T KOG3914|consen 132 YSFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLS 210 (390)
T ss_pred eeeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeee
Confidence 3444455544 3345567888889999999999999999999999998743 3344443 468774 77777 7899
Q ss_pred EeCCCeEEEEEcCCCcEEEEEe
Q 046394 98 INKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 98 ~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
+|.|++|++||+.+|+.+.++.
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 9999999999999999887665
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.4e-06 Score=78.13 Aligned_cols=173 Identities=13% Similarity=0.151 Sum_probs=109.6
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CC------CeEEeeccCCCe-eEEEE---EEEEEeCCCeEE
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DG------TELHCSKEHGEV-LKLQF---LLASINKLGQLR 105 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~------~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~ 105 (378)
...+.+|+..|..++--.+.+.+++++.|.+|++|.+ .| .+..++..|..+ .++.| +-..++.||-|.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 4567889998988877677788999999999999993 22 356778899887 88988 334456789999
Q ss_pred EEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec--CCCE-EEEEECCCeEEEEEcCCc
Q 046394 106 YQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP--NGHL-MATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp--~g~~-l~t~~~d~~i~iwd~~~~ 182 (378)
+||.--+.++..+.... . .+.+..+..-| +... ++.|+...+|+++|.+.+
T Consensus 808 lWDPFigr~Laq~~dap-------------------------k-~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAP-------------------------K-EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred eecccccchhHhhhcCc-------------------------c-cCCCceeEecccCcchheeeeccchhhheeeecccc
Confidence 99987777665443211 1 11222222223 2333 344577889999999986
Q ss_pred eeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccccc
Q 046394 183 EVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWV 262 (378)
Q Consensus 183 ~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~ 262 (378)
.-...+ .+..-.+ ....+.+++..|.|.+||++-++|.+.++.+-.+ ..|..|.
T Consensus 862 e~~~E~------------------------kVcna~~-Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G-~vINswr 915 (1034)
T KOG4190|consen 862 EWTCEL------------------------KVCNAPG-PNALTRAIAVADKGNKLAAALSNGCIAILDARNG-KVINSWR 915 (1034)
T ss_pred cceeeE------------------------EeccCCC-CchheeEEEeccCcchhhHHhcCCcEEEEecCCC-ceeccCC
Confidence 644332 0000111 2234666777777777777777776655543222 2245554
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=1.3e-05 Score=74.18 Aligned_cols=202 Identities=7% Similarity=0.006 Sum_probs=112.5
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEe-ec-cCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHC-SK-EHGEV-LKLQF-----LLASINKLGQLRYQN 108 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~-~~-~~~~~-~~l~~-----~l~s~~~d~~i~iwd 108 (378)
-.++.+|...|..+.|+-+.+.|-++..+|-|.||- ..|.=... +. ....+ .+++| .++..-.||.|.+=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 356889999999999999888899999999999998 33321111 11 11122 66666 444444555554443
Q ss_pred cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------eeecCCCEEEEEEe----
Q 046394 109 VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------------------MLCHQGPVSALAFH---- 159 (378)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------------~~~h~~~v~~~~~s---- 159 (378)
+. |..+.--.........+.|++|...++.+-.+|. +......|..+.|.
T Consensus 144 vd-GNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 144 VD-GNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred ec-cceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 32 2211111111123346778887765555444443 11112224444443
Q ss_pred ----cCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc------------------CCCCCceEE
Q 046394 160 ----PNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS------------------GSHNYNRYM 215 (378)
Q Consensus 160 ----p~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~------------------~~~~~~~~~ 215 (378)
|+.-.|+.|-..|.+.|---.+...-..+ +..+..+.|+++|..... -+.-+..+.
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~g 302 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVG 302 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheE
Confidence 36667777777777666432221111112 456677788888875111 112233444
Q ss_pred EeeccCCcceeeeEEcCCCCeEEEec
Q 046394 216 GYSMVKGYQIGKVSFRPYEDVLGIGH 241 (378)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~g~~l~~~~ 241 (378)
.++. .+..|++++|-..|-.+|.+.
T Consensus 303 tlkv-pg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 303 TLKV-PGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred EEec-CCceeeeeEEcCCceEEEEEe
Confidence 5555 677789999987776655543
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.32 E-value=3.1e-06 Score=78.49 Aligned_cols=190 Identities=13% Similarity=0.168 Sum_probs=121.9
Q ss_pred eecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe--eEEEE-------EEEEE
Q 046394 30 VDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV--LKLQF-------LLASI 98 (378)
Q Consensus 30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~--~~l~~-------~l~s~ 98 (378)
||-.|-.+...+... +++.++..+|.|+-+|.++..| +++.| ..+.+..-+...+.. ....| +.++.
T Consensus 10 yns~tf~kslsl~v~-~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 10 YNSPTFGKSLSLKVD-GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred CCCCccCceeEEEec-CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe
Confidence 444455555666664 7888999999999999998887 55666 344554444433322 44444 33333
Q ss_pred eCCCeEEEEEcCCC--cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC-CCEEEEEECCCeEE
Q 046394 99 NKLGQLRYQNVTMG--EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN-GHLMATSGKDCKIK 175 (378)
Q Consensus 99 ~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~ 175 (378)
.....-.+|++... +.+ .|. +.+|...|+.+.|+|+ ...+++++.|-.+.
T Consensus 88 ts~qkaiiwnlA~ss~~aI-ef~--------------------------lhghsraitd~n~~~q~pdVlatcsvdt~vh 140 (1081)
T KOG0309|consen 88 TSNQKAIIWNLAKSSSNAI-EFV--------------------------LHGHSRAITDINFNPQHPDVLATCSVDTYVH 140 (1081)
T ss_pred cCcchhhhhhhhcCCccce-EEE--------------------------EecCccceeccccCCCCCcceeeccccccce
Confidence 33344557776432 111 121 3489999999999994 45789999999999
Q ss_pred EEEcCCc-eeeeee---cCCceEEEEecCCC----------ccccCCC-CCceEEEeeccCCcceeeeEEcCCC-CeEEE
Q 046394 176 IWDLRKY-EVLQTL---PGHAKTLDFSRKDS----------GDFSGSH-NYNRYMGYSMVKGYQIGKVSFRPYE-DVLGI 239 (378)
Q Consensus 176 iwd~~~~-~~~~~~---~~~i~~~~~sp~g~----------~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~ 239 (378)
.||+++- .++..+ +...+.+.|+-... ..+|+.+ ...++...++ |...|+.+.|..-- ..+.+
T Consensus 141 ~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~-~vs~vn~~~fnr~~~s~~~s 219 (1081)
T KOG0309|consen 141 AWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG-HVSSVNSIDFNRFKYSEIMS 219 (1081)
T ss_pred eeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc-cceeeehHHHhhhhhhhhcc
Confidence 9999984 345555 67777888865322 2666654 4456777777 77888888886543 24455
Q ss_pred ecCCCeEEEE
Q 046394 240 GHSMGVSGIL 249 (378)
Q Consensus 240 ~~~~g~~~~~ 249 (378)
++.||++.+|
T Consensus 220 ~~~d~tvkfw 229 (1081)
T KOG0309|consen 220 SSNDGTVKFW 229 (1081)
T ss_pred cCCCCceeee
Confidence 5556655555
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=2.8e-05 Score=73.43 Aligned_cols=219 Identities=17% Similarity=0.122 Sum_probs=140.3
Q ss_pred CCceEEEEcCCCCEEEEEeC----CCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEE
Q 046394 46 LGPYTLDFTSSGRYMAAAGC----KGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVG 116 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~ 116 (378)
...+-+.|+|...++|+++. .|.|.||--+|.+.....-.-.+++++| .|+.|-.-|.+.+|...+.+.-.
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 33446789999999888765 6789999877876554443334477899 78888888999999987766655
Q ss_pred EEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------------------------------eeec
Q 046394 117 NFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------------------------------MLCH 149 (378)
Q Consensus 117 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------------------------------~~~h 149 (378)
....|+.++..+.|||+|..+.++..-|. ..+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD 175 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD 175 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence 56678999999999999999999988776 0010
Q ss_pred CCCE------------EEE--EEecCCCEEEEEECCCeEEEEEcCCcee--eeee--------c---CCc--------eE
Q 046394 150 QGPV------------SAL--AFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL--------P---GHA--------KT 194 (378)
Q Consensus 150 ~~~v------------~~~--~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~--------~---~~i--------~~ 194 (378)
...+ .++ .=.|+|..|..++.+|+|+--|-. |.+ +..+ + ..+ .+
T Consensus 176 e~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~ 254 (1416)
T KOG3617|consen 176 ESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDC 254 (1416)
T ss_pred hhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceee
Confidence 0000 001 113678888889999988877743 222 2222 1 111 11
Q ss_pred EEEe-cCCCc------cccCC---CCC--------ce---EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC-
Q 046394 195 LDFS-RKDSG------DFSGS---HNY--------NR---YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG- 252 (378)
Q Consensus 195 ~~~s-p~g~~------~~~~~---~~~--------~~---~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~- 252 (378)
+.|. |.|.. .+... +.+ .. -..+....+..+++++++..+..|..|.+.|.+.+|.-.
T Consensus 255 l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~ 334 (1416)
T KOG3617|consen 255 LIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVN 334 (1416)
T ss_pred EEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecC
Confidence 2222 22321 11100 000 00 001111135679999999999999999999998888633
Q ss_pred C---CCcccccccCCC
Q 046394 253 S---GEPNFDSWVANP 265 (378)
Q Consensus 253 s---~d~~i~~w~~~~ 265 (378)
+ ++.++..|..+.
T Consensus 335 ~~f~g~p~~d~w~l~~ 350 (1416)
T KOG3617|consen 335 KGFQGDPTIDVWTLNG 350 (1416)
T ss_pred ccccCCCCcceEEecC
Confidence 2 477888997654
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=9.4e-06 Score=72.94 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=89.8
Q ss_pred EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecCCCEEEEEEC-
Q 046394 104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPNGHLMATSGK- 170 (378)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~- 170 (378)
.-.|+.....+...-....-.-+-+.|||.|.+|++-...|. -..|. .|.-+.|||..+||+|=|.
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~ 270 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPE 270 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCC
Confidence 456765433222221222234567899999999999888887 22343 5788999999999998653
Q ss_pred ----------CCeEEEEEcCCceeeeeec------CCceEEEEecCCCcc---------ccCCCCCceEEEeeccCCcce
Q 046394 171 ----------DCKIKIWDLRKYEVLQTLP------GHAKTLDFSRKDSGD---------FSGSHNYNRYMGYSMVKGYQI 225 (378)
Q Consensus 171 ----------d~~i~iwd~~~~~~~~~~~------~~i~~~~~sp~g~~~---------~~~~~~~~~~~~~~~~~~~~v 225 (378)
...++|||+++|...+.++ ....-..||.|+++. ++......++-.-.. .-..|
T Consensus 271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl-ki~gI 349 (698)
T KOG2314|consen 271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL-KISGI 349 (698)
T ss_pred ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccccc-CCccc
Confidence 1479999999999988881 123556899999873 233322222221111 33458
Q ss_pred eeeEEcCCCCeEEEec
Q 046394 226 GKVSFRPYEDVLGIGH 241 (378)
Q Consensus 226 ~~~~~sp~g~~l~~~~ 241 (378)
....|||.+.+||.-.
T Consensus 350 r~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWT 365 (698)
T ss_pred cCcccCCCcceEEEEc
Confidence 8999999999988644
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.26 E-value=0.00059 Score=67.40 Aligned_cols=164 Identities=12% Similarity=0.145 Sum_probs=105.2
Q ss_pred eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC----------------------
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---------------------- 75 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---------------------- 75 (378)
.+.+...|.+.+.|.++..... ...-..+|.+++||||+..++..+..+++.+...+
T Consensus 83 i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~V 161 (1265)
T KOG1920|consen 83 ICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNV 161 (1265)
T ss_pred EEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccccccee
Confidence 4445556777777777665432 22235789999999999999988888888776521
Q ss_pred --CCeEEeeccC----------------------CCeeEEEE-----EEEEE----eCC-CeEEEEEcCCCcEEEEEecC
Q 046394 76 --GTELHCSKEH----------------------GEVLKLQF-----LLASI----NKL-GQLRYQNVTMGEIVGNFWTG 121 (378)
Q Consensus 76 --~~~~~~~~~~----------------------~~~~~l~~-----~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~ 121 (378)
|..-..+++. ..-+.+.| ++|+. ..+ ..|++||-+ |..-..-...
T Consensus 162 GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~ 240 (1265)
T KOG1920|consen 162 GWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV 240 (1265)
T ss_pred cccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcc
Confidence 1111122211 11245788 55552 234 789999976 5543333334
Q ss_pred CCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEEEEEecCCCEEEE---EECCCeEEEEE
Q 046394 122 LGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSALAFHPNGHLMAT---SGKDCKIKIWD 178 (378)
Q Consensus 122 ~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t---~~~d~~i~iwd 178 (378)
.+.-.+++|-|.|..+++-..... +......|..++|+.++..|++ +.....|++|-
T Consensus 241 ~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 241 EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 455578999999999888654443 1111234889999999999887 44455699999
Q ss_pred cCCce
Q 046394 179 LRKYE 183 (378)
Q Consensus 179 ~~~~~ 183 (378)
+.+..
T Consensus 321 ~~Nyh 325 (1265)
T KOG1920|consen 321 TGNYH 325 (1265)
T ss_pred ecCeE
Confidence 88754
No 310
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.24 E-value=0.0003 Score=59.21 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=85.7
Q ss_pred EeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEeec--cCCCeeEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394 40 DIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTELHCSK--EHGEVLKLQF-----LLASINKLGQLRYQNVTM 111 (378)
Q Consensus 40 ~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~ 111 (378)
.+.+-...+.+|+|+|+.. ++++....+.|..++.+|..+..+. +..+.-.+++ ++++.-.++.+.++++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 4444445699999999765 5566666888888899898887754 3344577888 455544689999998843
Q ss_pred Cc------EEEEEe-----cCCCCeeEEEEcCCCCEEEEEcCCCe-----e--------------------eecCCCEEE
Q 046394 112 GE------IVGNFW-----TGLGRTDVIRVNPFNGVVSLGHSGGT-----M--------------------LCHQGPVSA 155 (378)
Q Consensus 112 ~~------~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~-----~--------------------~~h~~~v~~ 155 (378)
.. .+..+. .++..+-.++|+|.++.|+++-.... + ......+.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 21 122222 13345889999998876666543322 0 012234678
Q ss_pred EEEec-CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 156 LAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 156 ~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
++++| .|++++.+..+..|.++| .+|+++..+
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 88999 456667777788888888 566665543
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.21 E-value=0.0027 Score=54.13 Aligned_cols=167 Identities=18% Similarity=0.214 Sum_probs=107.6
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeEEeeccC-----CC--eeEEEE--
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFT-SSGRYMAAAGCKGYPYFYNRDGTELHCSKEH-----GE--VLKLQF-- 93 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~--~~~l~~-- 93 (378)
.+.|..|+..++.... +... .+.++++. +++ .|+++... .+.++|.....+..+... .. ++.+++
T Consensus 21 ~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~ 95 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP 95 (246)
T ss_dssp TTEEEEEETTTTEEEE-EESS--SEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred CCEEEEEECCCCeEEE-EecC--CCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence 5677778877765532 3333 27788888 665 45555554 466669554443332211 22 378888
Q ss_pred ---EEEEEeCC--------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe----------------
Q 046394 94 ---LLASINKL--------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT---------------- 145 (378)
Q Consensus 94 ---~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~---------------- 145 (378)
++++.... |.|..++.. ++..... ......+.|+|+|+++.|+++. ..+.
T Consensus 96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~ 173 (246)
T PF08450_consen 96 DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR 173 (246)
T ss_dssp TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE
T ss_pred CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeee
Confidence 55554433 567777776 5543333 3346788999999999776544 3333
Q ss_pred --eee-cC--CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEe
Q 046394 146 --MLC-HQ--GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFS 198 (378)
Q Consensus 146 --~~~-h~--~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~s 198 (378)
+.. .. +..-.+++.++|++.++....+.|.++|.. |+.+..+ + ..+++++|.
T Consensus 174 ~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 174 RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 111 11 236679999999988888889999999987 8888877 4 688999995
No 312
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.0014 Score=60.08 Aligned_cols=172 Identities=18% Similarity=0.215 Sum_probs=104.9
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCC-Cc---------e-EEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPEL-GP---------Y-TLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS 82 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~-~v---------~-~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~ 82 (378)
.++.|....++.+..+|..+++.++....... .. . .+.. ++..++.++.+|.++.+| .+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 45667777788999999999999888765421 00 0 1111 345677888899999999 578888776
Q ss_pred ccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE-EEEcC--CCCEEEEEcCCCeeee---cCC-
Q 046394 83 KEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV-IRVNP--FNGVVSLGHSGGTMLC---HQG- 151 (378)
Q Consensus 83 ~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~--~~~~l~~~~~d~~~~~---h~~- 151 (378)
...... ..... .++.+..++.|..+|..+|+.+..+......+.. ..-+| .+..++.++.++.+.. ..+
T Consensus 147 ~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 147 KVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred cCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence 655443 22222 6666778899999999999998877543111000 00011 1223444444443100 000
Q ss_pred -----------------CEEEEEEec--CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 152 -----------------PVSALAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 152 -----------------~v~~~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
....+..+| .+..++.++.++.+..+|+.+|+.+...
T Consensus 227 ~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 227 LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 001111233 3456777778999999999999877655
No 313
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.00026 Score=66.52 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=151.6
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC--------CCCeEEeeccC
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR--------DGTELHCSKEH 85 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~--------~~~~~~~~~~~ 85 (378)
.+-...+.....+-+|+..+|++.+..........|+.+.| |.+.+..-+..|.+.+-+. .|.....-..|
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~ 204 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH 204 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence 35566778888999999999999999888767777899999 5677777777888888773 12232222222
Q ss_pred CC----------------e-eEEEE--------------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC
Q 046394 86 GE----------------V-LKLQF--------------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN 134 (378)
Q Consensus 86 ~~----------------~-~~l~~--------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 134 (378)
.+ . .+..| .++.......+.++|++-..++.......+.+.-+.+-|++
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 11 0 11222 22223345678999998888888877777777778888877
Q ss_pred C--EEEEEcCCCe-------------------------------------------------------------------
Q 046394 135 G--VVSLGHSGGT------------------------------------------------------------------- 145 (378)
Q Consensus 135 ~--~l~~~~~d~~------------------------------------------------------------------- 145 (378)
+ .|++...||.
T Consensus 285 ~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~ 364 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS 364 (1062)
T ss_pred CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence 4 7888888887
Q ss_pred --------------------------------------eeecCCCEEEEEEec-----------CCC-------EEEEEE
Q 046394 146 --------------------------------------MLCHQGPVSALAFHP-----------NGH-------LMATSG 169 (378)
Q Consensus 146 --------------------------------------~~~h~~~v~~~~~sp-----------~g~-------~l~t~~ 169 (378)
..+|....++....| .|+ ++|.|.
T Consensus 365 ~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT 444 (1062)
T KOG1912|consen 365 NGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT 444 (1062)
T ss_pred cCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence 233555554444332 222 467889
Q ss_pred CCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc-------------------cccCCCCC--ceEEEeeccCCcce
Q 046394 170 KDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG-------------------DFSGSHNY--NRYMGYSMVKGYQI 225 (378)
Q Consensus 170 ~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~-------------------~~~~~~~~--~~~~~~~~~~~~~v 225 (378)
..|+|.++|+.++.....+ .+.|.++.|--...+ .+.+.+++ ..+...+.+...+|
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI 524 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPI 524 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcc
Confidence 9999999999998876666 355666666443332 22222222 23333444467889
Q ss_pred eeeEEcCCCCeEEEecCCC
Q 046394 226 GKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 226 ~~~~~sp~g~~l~~~~~~g 244 (378)
..+..|..|+||+....+.
T Consensus 525 ~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 525 RAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred eeeeecccCceEEEEeccc
Confidence 9999999999987665554
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=2.9e-06 Score=80.28 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=99.9
Q ss_pred EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394 79 LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------- 145 (378)
Q Consensus 79 ~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------- 145 (378)
..+++.|... ++++| .|+.|+..|.|+++++.+|........|...++.+.-+.+|..+++.+....
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4556777766 99999 9999999999999999999999999999999999999999987777665444
Q ss_pred -----eeecC-CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCc-----cccC
Q 046394 146 -----MLCHQ-GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG-----DFSG 207 (378)
Q Consensus 146 -----~~~h~-~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~-----~~~~ 207 (378)
-..|. ..-.++.|+..-..-+.|+......|||+.++.++.++ ...-++..|||+... .+|+
T Consensus 1174 ~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWD 1253 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWD 1253 (1516)
T ss_pred cccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeee
Confidence 11122 12346778775444445555566889999998888775 123478899998876 3444
Q ss_pred CCCCceEEE
Q 046394 208 SHNYNRYMG 216 (378)
Q Consensus 208 ~~~~~~~~~ 216 (378)
.+..+.+..
T Consensus 1254 vR~~~aIh~ 1262 (1516)
T KOG1832|consen 1254 VRIPEAIHR 1262 (1516)
T ss_pred eccHHHHhh
Confidence 444444433
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.06 E-value=0.006 Score=52.43 Aligned_cols=170 Identities=15% Similarity=0.060 Sum_probs=108.1
Q ss_pred ceEEEEcC-CCCEEEEEeCCCc-EEEEe-CCCCeEEeeccCCCe---eEEEE-----EEEEE-----eCCCeEEEEEcC-
Q 046394 48 PYTLDFTS-SGRYMAAAGCKGY-PYFYN-RDGTELHCSKEHGEV---LKLQF-----LLASI-----NKLGQLRYQNVT- 110 (378)
Q Consensus 48 v~~~~~sp-~g~~l~~~~~dg~-i~iwd-~~~~~~~~~~~~~~~---~~l~~-----~l~s~-----~~d~~i~iwd~~- 110 (378)
...++.+| .+..++.+-.-|. ..+|| .++.....+....+- -.-.| +|++. ...|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 4556777777665 67788 566666665544332 22344 44443 335889999998
Q ss_pred CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------------------------e--eecCCCEE
Q 046394 111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------------------------M--LCHQGPVS 154 (378)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------------------------~--~~h~~~v~ 154 (378)
+.+.+..+..+.-....+.+.|||..|+++...-. + .-|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66788889888777888999999987777643222 2 33566788
Q ss_pred EEEEecCCCEEEEEECCC-------eEEEEEcCCceeeeee----------cCCceEEEEecCCCccccCCCCCceEEEe
Q 046394 155 ALAFHPNGHLMATSGKDC-------KIKIWDLRKYEVLQTL----------PGHAKTLDFSRKDSGDFSGSHNYNRYMGY 217 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~~d~-------~i~iwd~~~~~~~~~~----------~~~i~~~~~sp~g~~~~~~~~~~~~~~~~ 217 (378)
.++++++|..++..-..| .|-+++.. ..+..+ ...+-+|+++++|......+.....+..|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 888888887666554444 24444332 222222 45678888888887655544555555555
Q ss_pred ec
Q 046394 218 SM 219 (378)
Q Consensus 218 ~~ 219 (378)
..
T Consensus 245 d~ 246 (305)
T PF07433_consen 245 DA 246 (305)
T ss_pred EC
Confidence 33
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=0.0047 Score=51.01 Aligned_cols=122 Identities=15% Similarity=0.076 Sum_probs=87.9
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe---eE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV---LK 90 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~---~~ 90 (378)
..-.+..+..+.+...|..+|...+.--.. ..+-+-+.- -|++++.|+..|.+++.+ .+|.....+.....+ ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 344455567899999999999887765442 233322222 377899999999999999 567677777665544 44
Q ss_pred EEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEE
Q 046394 91 LQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVS 138 (378)
Q Consensus 91 l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 138 (378)
++| ++..++.|++.+..|..+..++...+-..+...+.+..| ++.+++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 555 899999999999999999999888776666666667777 444433
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00012 Score=63.60 Aligned_cols=86 Identities=5% Similarity=-0.053 Sum_probs=67.9
Q ss_pred eeeeecccceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE------EEEEE
Q 046394 27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF------LLASI 98 (378)
Q Consensus 27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~------~l~s~ 98 (378)
++..+..+.....-+..|...|..++|||..+ ++..++.+..|.|.|+ +...+..+..+..+.+++| +++.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 44455555555555677777899999999877 7888889999999995 4455667778877799999 88899
Q ss_pred eCCCeEEEEEcCCC
Q 046394 99 NKLGQLRYQNVTMG 112 (378)
Q Consensus 99 ~~d~~i~iwd~~~~ 112 (378)
..+|.|.|||++..
T Consensus 255 l~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQP 268 (463)
T ss_pred ccCceEEEEEccCC
Confidence 99999999999864
No 318
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.04 E-value=0.00028 Score=68.51 Aligned_cols=118 Identities=9% Similarity=-0.041 Sum_probs=82.5
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCC-------CCEEEEEeCCCcEEEEe--CCCCeEEeeccCC-----Cee
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSS-------GRYMAAAGCKGYPYFYN--RDGTELHCSKEHG-----EVL 89 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~-------g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~-----~~~ 89 (378)
...|+-.|+..|+.+.....|.... -..+.|+ ....++|-.+..+..|| +.+..+..-..+. ..+
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 5778889999999999999886541 3344453 23457777888999999 4454332212221 125
Q ss_pred EEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394 90 KLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 90 ~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 142 (378)
|++- +||.|+.+|.|++||--..+....+++-..+|.+|..+.||.+|++.+.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 5555 9999999999999994333334455666789999999999998776543
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.00073 Score=66.78 Aligned_cols=162 Identities=14% Similarity=0.208 Sum_probs=100.9
Q ss_pred eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------
Q 046394 88 VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------- 145 (378)
Q Consensus 88 ~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------- 145 (378)
+.++.| .++.+..+|.|.+-|..+... .....-.+.|.+++||||+..++..+..++
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~ 149 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD 149 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc
Confidence 467777 566666778888888776543 222334578999999999999988888766
Q ss_pred --------------------eeec---------------------CCCEEEEEEecCCCEEEEEE----CC-CeEEEEEc
Q 046394 146 --------------------MLCH---------------------QGPVSALAFHPNGHLMATSG----KD-CKIKIWDL 179 (378)
Q Consensus 146 --------------------~~~h---------------------~~~v~~~~~sp~g~~l~t~~----~d-~~i~iwd~ 179 (378)
+.+. .+.=++|.|--||.++|+.. .+ ..|+|||.
T Consensus 150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr 229 (1265)
T KOG1920|consen 150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR 229 (1265)
T ss_pred cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence 1110 11124589999999998833 23 78999997
Q ss_pred CCceeeeee---cCCceEEEEecCCCcccc--C-CCCCc-eEE------------EeeccCCcceeeeEEcCCCCeEEE-
Q 046394 180 RKYEVLQTL---PGHAKTLDFSRKDSGDFS--G-SHNYN-RYM------------GYSMVKGYQIGKVSFRPYEDVLGI- 239 (378)
Q Consensus 180 ~~~~~~~~~---~~~i~~~~~sp~g~~~~~--~-~~~~~-~~~------------~~~~~~~~~v~~~~~sp~g~~l~~- 239 (378)
. |.+-.+- .+--.+++|-|.|..... . ..... .++ .+.. ....|..++|+.++..||+
T Consensus 230 E-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~-de~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 230 E-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL-DEKEVEELAWNSNSDILAVV 307 (1265)
T ss_pred c-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcc-cccchheeeecCCCCceeee
Confidence 6 4432222 244577888887764111 0 00111 111 1111 2234899999999999998
Q ss_pred --ecCCCeEEEEEcC
Q 046394 240 --GHSMGVSGILIPG 252 (378)
Q Consensus 240 --~~~~g~~~~~~~~ 252 (378)
......+.+|.++
T Consensus 308 ~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 308 TSNLENSLVQLWTTG 322 (1265)
T ss_pred ecccccceEEEEEec
Confidence 4445545655544
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.03 E-value=0.0019 Score=59.27 Aligned_cols=171 Identities=11% Similarity=0.034 Sum_probs=102.2
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCCce-EEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC-----
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPY-TLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE----- 87 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~-~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~----- 87 (378)
.++.|....++.+..+|..+++.++...... .+. +.... +..++++..+|.|..+| .+|+.+..+.....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 3566666778899999999999988877653 222 11222 34677788899999999 57888777653211
Q ss_pred --eeEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-------CeeEEEEcC--CCCEEEEEcCCCe---eeecCC
Q 046394 88 --VLKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLG-------RTDVIRVNP--FNGVVSLGHSGGT---MLCHQG 151 (378)
Q Consensus 88 --~~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~--~~~~l~~~~~d~~---~~~h~~ 151 (378)
..-+.. .++.++.++.+..+|..+|+.+........ ....+..+| .+..+++++.++. +....+
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 111112 566677889999999999987665532110 011111122 2344555555554 111111
Q ss_pred CE-EEE------EEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 152 PV-SAL------AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 152 ~v-~~~------~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
.+ ... .....+..++.++.+|.|..+|..+|+.+...
T Consensus 277 ~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 277 QIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 11 000 01124567777888999999999998876543
No 321
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.02 E-value=0.0019 Score=59.20 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=34.4
Q ss_pred cEEEEeCCCCeEEeeccCCC-eeEEEE----EEEEEeCCCeEEEEEcC
Q 046394 68 YPYFYNRDGTELHCSKEHGE-VLKLQF----LLASINKLGQLRYQNVT 110 (378)
Q Consensus 68 ~i~iwd~~~~~~~~~~~~~~-~~~l~~----~l~s~~~d~~i~iwd~~ 110 (378)
.|.||+..|..+..+.-..+ +.++.| .|+....||.++++|+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 49999999998877654434 488889 77777799999999984
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=0.00028 Score=64.53 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=54.9
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceee
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGK 227 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (378)
.....|.+++++|+...|+.|+.||+|.+||...+..... . ..-.++.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------------------------------k--a~~~P~~ 304 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------------------------------K--AEFIPTL 304 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------------------------------e--ecccceE
Confidence 4677899999999999999999999999999876431110 0 1234567
Q ss_pred eEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394 228 VSFRPYEDVLGIGHSMGVSGILIPGSG 254 (378)
Q Consensus 228 ~~~sp~g~~l~~~~~~g~~~~~~~~s~ 254 (378)
++|+|+|.++++|+..|.+.+|..+-+
T Consensus 305 iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 305 IAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 778888877777777777776654433
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00081 Score=62.70 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=72.8
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc--CCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEE--
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE--HGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIV-- 115 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~-- 115 (378)
..|.=-+++..+.+|+.|++-|.+++|+..+.....+.. ..+. ..... ++|.|+..|.|.++.+..+.+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344444566778999999999999999976666555544 2333 22222 7888888999999988764431
Q ss_pred ---EEE-ecCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394 116 ---GNF-WTGLGRTDVIRVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 116 ---~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~ 145 (378)
..+ ..|...|++++|++++..+++|...|.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCce
Confidence 111 125788999999999999999999887
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=0.0016 Score=61.19 Aligned_cols=148 Identities=12% Similarity=0.073 Sum_probs=96.9
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----------
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF---------- 93 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~---------- 93 (378)
.+.+.++|..+.+..+++... +....++++|+|.++++.+.+.. .+..+..+........+.|
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE------~G~tl~em~a~e~d~~vvfni~~iea~vk 286 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSE------EGVTLAEMMAAERDWVVVFNIARIEEAVK 286 (635)
T ss_pred eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcc------cCcceeeeccccCceEEEEchHHHHHhhh
Confidence 467788899998888888775 46678899999999988864321 1112222211111122222
Q ss_pred ---EEEEEeCCCeEEEEEcCC----C-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------ee---------
Q 046394 94 ---LLASINKLGQLRYQNVTM----G-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------ML--------- 147 (378)
Q Consensus 94 ---~l~s~~~d~~i~iwd~~~----~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------~~--------- 147 (378)
+... .++.|.+.|..+ + ..+..+. -......+.++|||+++++++.... +.
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 1111 357899999988 3 4455554 4567889999999999888776443 00
Q ss_pred -----e---cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 148 -----C---HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 148 -----~---h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
+ -.-.....+|.++|+.+.|.-.|..|..||+..
T Consensus 364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0 011224568899998888888999999999865
No 325
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.95 E-value=7.9e-05 Score=60.93 Aligned_cols=87 Identities=9% Similarity=-0.000 Sum_probs=61.0
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCC--CCeEEeeccCCCe-eEEEE------E
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRD--GTELHCSKEHGEV-LKLQF------L 94 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~-~~l~~------~ 94 (378)
+..++|++........-.....+|.+++-+|.. +.+++|+.||.+-+||.. ..+...+..|... +.+.| .
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 345555554433322222223459999999966 466778889999999943 2344557788876 88888 8
Q ss_pred EEEEeCCCeEEEEEcCC
Q 046394 95 LASINKLGQLRYQNVTM 111 (378)
Q Consensus 95 l~s~~~d~~i~iwd~~~ 111 (378)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999864
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00028 Score=64.55 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=88.4
Q ss_pred eeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE---eCC-CcEEEEeCCCCe---EEeeccCCCeeEEEE------
Q 046394 27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA---GCK-GYPYFYNRDGTE---LHCSKEHGEVLKLQF------ 93 (378)
Q Consensus 27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~---~~d-g~i~iwd~~~~~---~~~~~~~~~~~~l~~------ 93 (378)
+.+-|.. +.....+......+..-+|+|++..++.. ... ..++++++.... +..+.++.. ...|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~--~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG--APAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC--CccCCCCCCE
Confidence 3344433 55555565555677788999999865543 223 458899954322 233333333 3333
Q ss_pred EEEEEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEE
Q 046394 94 LLASINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSA 155 (378)
Q Consensus 94 ~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~ 155 (378)
++++...||. |.++|+..++. ..+....+.-..-.|+|||+.++..++.+. +....+.-..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcC
Confidence 5556666665 66667766663 335544455557789999987776655443 1111111125
Q ss_pred EEEecCCCEEEEEECC-Ce--EEEEEcCCce
Q 046394 156 LAFHPNGHLMATSGKD-CK--IKIWDLRKYE 183 (378)
Q Consensus 156 ~~~sp~g~~l~t~~~d-~~--i~iwd~~~~~ 183 (378)
-.|+|||.+|+..+.. |. |.+.|+.++.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 5688889888877643 33 5566665543
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00012 Score=64.33 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=120.7
Q ss_pred CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCCe-eEEEE-----EEEEEeC-CCeEEEEEcCCC
Q 046394 44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGEV-LKLQF-----LLASINK-LGQLRYQNVTMG 112 (378)
Q Consensus 44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~-~~l~~-----~l~s~~~-d~~i~iwd~~~~ 112 (378)
|...|+.+..+ -..++.+++.||.++.|.... +.+..+..|.++ .+++. ++.|.+. |..++++|+.+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55556555433 356999999999999999544 223446667664 33333 7788777 999999998875
Q ss_pred cEEEEEec------------CCCCeeEEEEcC--CCCEEEE-EcCCCe-----eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394 113 EIVGNFWT------------GLGRTDVIRVNP--FNGVVSL-GHSGGT-----MLCHQGPVSALAFHPNGHLMATSGKDC 172 (378)
Q Consensus 113 ~~~~~~~~------------~~~~v~~~~~s~--~~~~l~~-~~~d~~-----~~~h~~~v~~~~~sp~g~~l~t~~~d~ 172 (378)
..+.-+.. ....+..++.+. ++..+++ +..+.. -.-|..+|..+.++|-+..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 54322211 112233333332 1221111 112221 345889999999999999999999999
Q ss_pred eEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394 173 KIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 173 ~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~ 252 (378)
.|.-|.... . +.-+=+.+.|.+....+++ .+.- ......++.|+|+|..+++-+.|..+.++..-
T Consensus 167 mVEyWs~e~--~---~qfPr~~l~~~~K~eTdLy---------~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 167 MVEYWSAEG--P---FQFPRTNLNFELKHETDLY---------GFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeEeecCCC--c---ccCccccccccccccchhh---------cccc-cccCccceEEccccCcccccCcccEEEEEEec
Confidence 999997652 0 1011112233322222222 1211 23457789999999999999999988888776
Q ss_pred CCCc
Q 046394 253 SGEP 256 (378)
Q Consensus 253 s~d~ 256 (378)
+++-
T Consensus 232 tGkl 235 (558)
T KOG0882|consen 232 TGKL 235 (558)
T ss_pred cchh
Confidence 6654
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.94 E-value=0.0012 Score=60.62 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=59.8
Q ss_pred eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcEEE
Q 046394 41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF----LLASINKLGQLRYQNVTMGEIVG 116 (378)
Q Consensus 41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~ 116 (378)
+......+..+.++|+|++++++ .+|...|+...+..-... .......| .+|+-..+++|.|+.--......
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc---CceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence 33344568899999999999985 577888887333222221 11144555 55665556677775211111111
Q ss_pred EEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEE
Q 046394 117 NFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTL 195 (378)
Q Consensus 117 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~ 195 (378)
.+.. ...+..|-. |.+|+..+.+ .|.+||+.+++.++.+ ..++..+
T Consensus 104 ~i~~-----------------------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V 150 (443)
T PF04053_consen 104 SIKL-----------------------------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYV 150 (443)
T ss_dssp ---------------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEE
T ss_pred EEcC-----------------------------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEE
Confidence 2211 111222211 5555555433 6777777777777777 3346777
Q ss_pred EEecCCCc
Q 046394 196 DFSRKDSG 203 (378)
Q Consensus 196 ~~sp~g~~ 203 (378)
.||++|.+
T Consensus 151 ~Ws~~g~~ 158 (443)
T PF04053_consen 151 IWSDDGEL 158 (443)
T ss_dssp EE-TTSSE
T ss_pred EEECCCCE
Confidence 77777664
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.86 E-value=0.011 Score=55.87 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=105.2
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCC------ce--EEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELG------PY--TLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG 86 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~------v~--~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~ 86 (378)
++.|....++.+..+|..+++.+......... +. .++.. ++..++.++.+|.|+-+| .+|+.+..+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 45666667899999999999998887654321 11 11111 225788888899999999 5788887765443
Q ss_pred C------e-eEEEE---EEEEEe---------CCCeEEEEEcCCCcEEEEEecCCCC--------------------e-e
Q 046394 87 E------V-LKLQF---LLASIN---------KLGQLRYQNVTMGEIVGNFWTGLGR--------------------T-D 126 (378)
Q Consensus 87 ~------~-~~l~~---~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~--------------------v-~ 126 (378)
. + .+..+ .++.++ .++.|..+|..+|+.+..+...... + .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 2 2 22222 444443 4688999999999988877542110 1 1
Q ss_pred EEEEcCCCCEEEEEcCCC------------------e--------------e--eecCC----CEEEEEEe----cCCC-
Q 046394 127 VIRVNPFNGVVSLGHSGG------------------T--------------M--LCHQG----PVSALAFH----PNGH- 163 (378)
Q Consensus 127 ~~~~s~~~~~l~~~~~d~------------------~--------------~--~~h~~----~v~~~~~s----p~g~- 163 (378)
..++.+.+..+++++.++ . + ..|.. ......+. -+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 345555666777776554 1 0 00100 00000111 1232
Q ss_pred --EEEEEECCCeEEEEEcCCceeeeee
Q 046394 164 --LMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 164 --~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
.++.++.+|.+...|..+|+.+...
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEe
Confidence 5777888999999999999988765
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.85 E-value=0.00066 Score=62.22 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=55.8
Q ss_pred CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCc
Q 046394 44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGE 113 (378)
Q Consensus 44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~ 113 (378)
....|.|++++|+...|+.|+.||.|.+||.........+..--++.++| ++++|+..|.+.+||+.-.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 34689999999999999999999999999965444333333333488999 89999999999999986543
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.83 E-value=6.7e-05 Score=42.53 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=33.5
Q ss_pred eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Q 046394 36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN 73 (378)
Q Consensus 36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd 73 (378)
+....+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566778888999999999999999999999999996
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=9.7e-05 Score=62.85 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=77.1
Q ss_pred eEEEeccceeeeeecccc----eeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC-CC---CeEEeeccCCCe
Q 046394 18 TWRIKQEAIAREVDILSS----RNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR-DG---TELHCSKEHGEV 88 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~----~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~-~~---~~~~~~~~~~~~ 88 (378)
.+...-.+.|-++|+... ......-.|+..|+++..-. ++.+|++.+.+|.|.+||. .. .-+..+.+|...
T Consensus 267 v~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~ 346 (425)
T KOG2695|consen 267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL 346 (425)
T ss_pred eEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc
Confidence 344455677788888766 22333445778898887655 6788999999999999993 23 337888888764
Q ss_pred -eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecC
Q 046394 89 -LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTG 121 (378)
Q Consensus 89 -~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 121 (378)
.-+-+ .++++|.|...+||.+..|+.+.+++..
T Consensus 347 ~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 347 SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 33333 7888999999999999999999888654
No 333
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0003 Score=63.42 Aligned_cols=140 Identities=10% Similarity=0.087 Sum_probs=90.1
Q ss_pred CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC-------EEEEEeCCCcEEEEe-
Q 046394 2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-------YMAAAGCKGYPYFYN- 73 (378)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-------~l~~~~~dg~i~iwd- 73 (378)
|+-.+..+|..++..+ ..++-.|++.|+.+-..+.|.. |.-+.+.|+.. .-+.|-.+..|.-||
T Consensus 340 L~~~dsnlil~~~~~~-------~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 340 LHRADSNLILMDGGEQ-------DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred hhccccceEeeCCCCc-------CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 4555566666655443 5677789999999999998855 88888888764 235677788999999
Q ss_pred -CCCC-eEEeeccCCCe-----eEEEE----EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEc
Q 046394 74 -RDGT-ELHCSKEHGEV-----LKLQF----LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGH 141 (378)
Q Consensus 74 -~~~~-~~~~~~~~~~~-----~~l~~----~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~ 141 (378)
+.+. .+....+|.-. .|.+- ++|.||.+|.|++||- .+.. -..++
T Consensus 412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP---------------------- 468 (644)
T KOG2395|consen 412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP---------------------- 468 (644)
T ss_pred cccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc----------------------
Confidence 3444 33344444322 33333 9999999999999996 4332 33343
Q ss_pred CCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394 142 SGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 142 ~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~ 179 (378)
+...+|..|..+.+|++|+..+ +..+.+.|+
T Consensus 469 ------gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 469 ------GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ------ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 3445666666666666654443 444544444
No 334
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.75 E-value=0.0007 Score=56.96 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=79.7
Q ss_pred cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC--CCe--EEeeccCC-----Ce-eEEEE------EEEEEeCCCeEEE
Q 046394 43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD--GTE--LHCSKEHG-----EV-LKLQF------LLASINKLGQLRY 106 (378)
Q Consensus 43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~--~~~--~~~~~~~~-----~~-~~l~~------~l~s~~~d~~i~i 106 (378)
.|...+.++.|..|...++++ .|=.|.+|+++ ... +..++.|. .+ ++..| .+.-++..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 466668899999988888776 46689999942 222 23334443 23 66666 5666677899999
Q ss_pred EEcCCCcE-E---EEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 107 QNVTMGEI-V---GNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 107 wd~~~~~~-~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
-|+++... . ..+.....++ ..-+ +.+-...|..+.|+|+|+++++-+. -+|+|||++..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v--------~~~f--------f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGV--------DVDF--------FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcc--------cchh--------HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 99975321 1 1111111111 0000 2234567888999999999988764 47999999873
Q ss_pred -eeeeee
Q 046394 183 -EVLQTL 188 (378)
Q Consensus 183 -~~~~~~ 188 (378)
.++.++
T Consensus 312 k~pikTi 318 (460)
T COG5170 312 KNPIKTI 318 (460)
T ss_pred cCCceee
Confidence 345554
No 335
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.71 E-value=0.0019 Score=46.27 Aligned_cols=61 Identities=13% Similarity=-0.014 Sum_probs=48.4
Q ss_pred ceEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEc
Q 046394 48 PYTLDFTS---SG-RYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF----LLASINKLGQLRYQNV 109 (378)
Q Consensus 48 v~~~~~sp---~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~ 109 (378)
|++|+++. || +.|++|+.|..|+||+-+ ..+..+..+..++++.. .|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 56666654 33 589999999999999854 56777777777766666 8999999999999985
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0015 Score=62.27 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=46.2
Q ss_pred EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046394 21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR 74 (378)
Q Consensus 21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~ 74 (378)
.|.-+.+.+|...+.+.......|..+|..+.|||+|..++++..-|.|.+|..
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 455678889988777766556678999999999999999999999999999984
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.0022 Score=58.81 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=88.8
Q ss_pred CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE-EEcCCCe---------------eeecCCCEEEEEEecCCCEE
Q 046394 102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS-LGHSGGT---------------MLCHQGPVSALAFHPNGHLM 165 (378)
Q Consensus 102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l 165 (378)
..+.++|+.+++...... ..+.-...+|+|||+.|+ +...+|. +....+.-+.-.|+|||+++
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEE
Confidence 569999999887544443 335556689999997655 4455555 11122222355799999998
Q ss_pred EEEEC-CC--eEEEEEcCCceeee-ee-cCCceEEEEecCCCccccCCCCCce--EEEeec---------cCCcceeeeE
Q 046394 166 ATSGK-DC--KIKIWDLRKYEVLQ-TL-PGHAKTLDFSRKDSGDFSGSHNYNR--YMGYSM---------VKGYQIGKVS 229 (378)
Q Consensus 166 ~t~~~-d~--~i~iwd~~~~~~~~-~~-~~~i~~~~~sp~g~~~~~~~~~~~~--~~~~~~---------~~~~~v~~~~ 229 (378)
+-.+. .| .|.++|+....... +. ...-....|||||.+.+........ +..+.. ........-+
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps 376 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPS 376 (425)
T ss_pred EEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCC
Confidence 87664 34 56677776655522 22 2333488999999986655422111 111111 0122334567
Q ss_pred EcCCCCeEEEecCCCeEEEEEcCCCCc
Q 046394 230 FRPYEDVLGIGHSMGVSGILIPGSGEP 256 (378)
Q Consensus 230 ~sp~g~~l~~~~~~g~~~~~~~~s~d~ 256 (378)
|.|+|..+...+..+.-..+...+.++
T Consensus 377 ~~~ng~~i~~~s~~~~~~~l~~~s~~g 403 (425)
T COG0823 377 WAPNGRMIMFSSGQGGGSVLSLVSLDG 403 (425)
T ss_pred cCCCCceEEEeccCCCCceEEEeeccc
Confidence 888888777665555333333333443
No 338
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.64 E-value=0.036 Score=48.44 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=65.6
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCC-------CceEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEeeccC
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPEL-------GPYTLDFTSSGRYMAAAGC--KGYPYFYNRDGTELHCSKEH 85 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~-------~v~~~~~sp~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~ 85 (378)
.++..+..-...|.+||..|......+..... ....+++|.||+++++... ...|.|.|+....+..--..
T Consensus 57 ~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~ 136 (342)
T PF06433_consen 57 YSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT 136 (342)
T ss_dssp EEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG
T ss_pred EeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC
Confidence 33444455568899999999988887665432 1236788899998877644 45788899665554332222
Q ss_pred CCeeEEEE-----EEEEEeCCCeEEEEEcC-CCcEEE
Q 046394 86 GEVLKLQF-----LLASINKLGQLRYQNVT-MGEIVG 116 (378)
Q Consensus 86 ~~~~~l~~-----~l~s~~~d~~i~iwd~~-~~~~~~ 116 (378)
.++ .+.| .|.+.+.||.+.-..+. .|+...
T Consensus 137 PGC-~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 137 PGC-WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp TSE-EEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred CCE-EEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 333 1222 67788889999988887 566543
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.63 E-value=0.028 Score=50.00 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=85.1
Q ss_pred eeeeeecccceeeEEeecCC-CCceEEEE---cCC----CCEEEEEeC----------CCcEEEEeCCC-----CeEEee
Q 046394 26 IAREVDILSSRNQYDIMLPE-LGPYTLDF---TSS----GRYMAAAGC----------KGYPYFYNRDG-----TELHCS 82 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~-~~v~~~~~---sp~----g~~l~~~~~----------dg~i~iwd~~~-----~~~~~~ 82 (378)
.++++|..+.+.+..+.... ..+.+++. ..+ ..+|++|.. .|.|.+++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46777777777666555433 33444433 332 467887754 28899999544 233332
Q ss_pred ---ccCCCeeEEEE---EEEEEeCCCeEEEEEcCCCc-EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------
Q 046394 83 ---KEHGEVLKLQF---LLASINKLGQLRYQNVTMGE-IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------- 145 (378)
Q Consensus 83 ---~~~~~~~~l~~---~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------- 145 (378)
.....+++++- .++.+ .++.|.+|++...+ ...... ....+..+.....++++++|.....
T Consensus 83 ~~~~~~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 83 HSTEVKGPVTAICSFNGRLVVA-VGNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEESS-EEEEEEETTEEEEE-ETTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEeecCcceEhhhhCCEEEEe-ecCEEEEEEccCcccchhhhe-ecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence 22223466665 54333 34789999998877 433322 2222233333333557777765443
Q ss_pred -------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394 146 -------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR 180 (378)
Q Consensus 146 -------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~ 180 (378)
-......++++.|-++++.++.+..+|.|.++...
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 11123346777777666678888888888877664
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.58 E-value=0.019 Score=52.92 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=80.5
Q ss_pred eecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394 10 LEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV 88 (378)
Q Consensus 10 l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~ 88 (378)
|.-...++++.+..++.-.++.......... +.....+|++.++ +|+-..++.|.|+. .+......+.....+
T Consensus 38 ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~ 111 (443)
T PF04053_consen 38 LSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSV 111 (443)
T ss_dssp EEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred EEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCCccc
Confidence 3333456667777777766666433333221 3345788998554 66666688899975 443332333322222
Q ss_pred eEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEE
Q 046394 89 LKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMA 166 (378)
Q Consensus 89 ~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~ 166 (378)
..+-. +|...+ ++.|.+||+.+++.+..+.. .+|..+.|+++|.+++
T Consensus 112 ~~If~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v------------------------------~~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 112 EKIFGGNLLGVKS-SDFICFYDWETGKLIRRIDV------------------------------SAVKYVIWSDDGELVA 160 (443)
T ss_dssp EEEE-SSSEEEEE-TTEEEEE-TTT--EEEEESS-------------------------------E-EEEEE-TTSSEEE
T ss_pred ceEEcCcEEEEEC-CCCEEEEEhhHcceeeEEec------------------------------CCCcEEEEECCCCEEE
Confidence 33333 344443 34899999999999998752 1367778888888877
Q ss_pred EEECCCeEEEEEcCCc--------------eeeeeecCCceEEEEecCCCccccCCCC
Q 046394 167 TSGKDCKIKIWDLRKY--------------EVLQTLPGHAKTLDFSRKDSGDFSGSHN 210 (378)
Q Consensus 167 t~~~d~~i~iwd~~~~--------------~~~~~~~~~i~~~~~sp~g~~~~~~~~~ 210 (378)
..+.+ ++.|++.... ..+..+...|.+.+|..| ..++....
T Consensus 161 l~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~ 215 (443)
T PF04053_consen 161 LVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN 215 (443)
T ss_dssp EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT
T ss_pred EEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC
Confidence 77755 4555554322 334444567888888766 44444333
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.52 E-value=0.00022 Score=40.26 Aligned_cols=31 Identities=45% Similarity=0.995 Sum_probs=28.4
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
.|...|.++.|+|++.++++++.|+.+++||
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5778899999999999999999999999996
No 342
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0081 Score=57.18 Aligned_cols=120 Identities=9% Similarity=0.060 Sum_probs=84.6
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCC-----CCEEEEEeCCCcEEEEeC---CCCeEEeeccCCC
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSS-----GRYMAAAGCKGYPYFYNR---DGTELHCSKEHGE 87 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~-----g~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~ 87 (378)
+-..+-+.||.+.+-.+.+.+...++..+ .++.+++++|+ .+.+++||.-| +.++.. .......+....+
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred ceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 34444556777777778888887777776 78999999998 45789999888 888772 2222223444455
Q ss_pred e-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC------eeEEEEcCCCCEEE
Q 046394 88 V-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGR------TDVIRVNPFNGVVS 138 (378)
Q Consensus 88 ~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~ 138 (378)
+ .++.| ++|-++.+| |++||+.+++.+..++..... ...+.|.++.++++
T Consensus 162 ~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 162 PIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred ceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 5 99999 788877776 899999999888777654333 34567776655443
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.27 E-value=0.0096 Score=58.19 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=41.2
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCcccc
Q 046394 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~ 206 (378)
......|++-+.+| +||+|+.+|.||+||- .|....+. +.+|..|..+.||++.+.
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 34456788888788 7999999999999994 34333333 578888888888886333
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00096 Score=61.50 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=64.3
Q ss_pred CCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEE-EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 123 GRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVS-ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 123 ~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~-~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
..+.-+.|+|.-.+||.+..+|. +.-|...++ +++|.|||+.||.|-.||+|++.|+.++..+..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 45667889999889998888885 333556666 9999999999999999999999999999888774
Q ss_pred ----cCCceEEEEec
Q 046394 189 ----PGHAKTLDFSR 199 (378)
Q Consensus 189 ----~~~i~~~~~sp 199 (378)
...+.++.|+|
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 57888899975
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.24 E-value=0.059 Score=48.65 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=44.6
Q ss_pred CceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 046394 14 GVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL 79 (378)
Q Consensus 14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 79 (378)
...+.++.+..+...++|+.+++....... ...+....|||+|+.+|... ++.|++++..+...
T Consensus 12 ~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 12 NYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp EEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 344555556678889999999765433333 56788999999999998885 57899998543333
No 346
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0012 Score=39.51 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL 79 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~ 79 (378)
..|.+++|||...+||.|+.+|.|.+|..+++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 5688999999999999999999999999877654
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.18 E-value=0.016 Score=52.73 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=48.9
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---eeccC-----C--CeeEEEE-------------E
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH---CSKEH-----G--EVLKLQF-------------L 94 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~~~~-----~--~~~~l~~-------------~ 94 (378)
..-+....+.|++++.|.-| ++|.|..+|.+.|.|+.|..+. .+..| . .++++.| .
T Consensus 79 ~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 34455567899999998666 8999999999999998776542 22221 1 1367888 7
Q ss_pred EEEEeCCCeEEEEEcC
Q 046394 95 LASINKLGQLRYQNVT 110 (378)
Q Consensus 95 l~s~~~d~~i~iwd~~ 110 (378)
+++|...|.+.+|.+.
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 7778888999888764
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.11 E-value=0.045 Score=51.83 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=95.3
Q ss_pred ccceeeeeeccc-----ceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-------------EEeec
Q 046394 23 QEAIAREVDILS-----SRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE-------------LHCSK 83 (378)
Q Consensus 23 ~~~~i~~~d~~~-----~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~-------------~~~~~ 83 (378)
.++.|.++|..+ ...+..+... ..+..+.+||||+++++++. +++|.|.|..... +....
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 457788999888 3455555553 67889999999999887766 8899999954321 23333
Q ss_pred cCCCeeEEEE-----EEEEEeCCCeEEEEEcCC----------CcEEEEEecCCCCee-----EEEEcCCCCEEEEEcCC
Q 046394 84 EHGEVLKLQF-----LLASINKLGQLRYQNVTM----------GEIVGNFWTGLGRTD-----VIRVNPFNGVVSLGHSG 143 (378)
Q Consensus 84 ~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~d 143 (378)
-..++...+| .+.|..-|..|-.||+.. ...+..+..|..+-. .=.-.|+|++|++...-
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence 3334566677 666777789999999876 234444444433222 12346888888876543
Q ss_pred Ce--eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 144 GT--MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 144 ~~--~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
.. +.. -+ -+.|+...|+-.|.|....|+|..+
T Consensus 453 skdrfl~-vg-----pl~pen~qlidIsgdkM~lv~d~p~ 486 (635)
T PRK02888 453 SKDRFLP-VG-----PLHPENDQLIDISGDKMKLVHDGPT 486 (635)
T ss_pred ccccccC-CC-----CCCCCcceeEEccCCeeEEEecCCC
Confidence 22 000 01 1245555666666677677777654
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.02 Score=52.13 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=77.6
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC--------EEEEEcCCCe---------------eeec-
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG--------VVSLGHSGGT---------------MLCH- 149 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~d~~---------------~~~h- 149 (378)
++.++.....|+-.|++.|+.+..+..+.. |+-+.+.|++. .|+--+.++. ..+|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 666777777899999999999999887765 78888888764 2222233332 1111
Q ss_pred ---CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCC
Q 046394 150 ---QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSH 209 (378)
Q Consensus 150 ---~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~ 209 (378)
.....|++-..+| ++|.||.+|.|++||- .+....+. ..+|..|..+.||++.+....
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 2233455555566 7999999999999997 54444443 678999999999997544433
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.25 Score=45.12 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=117.0
Q ss_pred ceeeEEEec-cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeC-CCCeEEeeccCCCee
Q 046394 15 VEKTWRIKQ-EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNR-DGTELHCSKEHGEVL 89 (378)
Q Consensus 15 ~~~~~~~~~-~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~-~~~~~~~~~~~~~~~ 89 (378)
..+.|.... .+.+.+.|..+.......... ..+..++++|++..+.++.. ++.+.+.|. ++...........+.
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~ 163 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT 163 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc
Confidence 344444443 588999998887777766654 37889999999988777655 678888884 455555543332336
Q ss_pred EEEE------EEEEEeCCCeEEEEEcCCCcEEE-E---EecCCCCeeEEEEcCCCCEEEEEcCCC---e----------e
Q 046394 90 KLQF------LLASINKLGQLRYQNVTMGEIVG-N---FWTGLGRTDVIRVNPFNGVVSLGHSGG---T----------M 146 (378)
Q Consensus 90 ~l~~------~l~s~~~d~~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d~---~----------~ 146 (378)
.+++ .+++-..++.|.+.|........ . ..........+.++|+|..+.+..... . .
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 6666 44555678999999976555442 1 011223456788889888666655443 2 1
Q ss_pred eecCC-----CEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceeeeee------cCCceEEEEecCC
Q 046394 147 LCHQG-----PVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKD 201 (378)
Q Consensus 147 ~~h~~-----~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp~g 201 (378)
..... ....+.++|+|.++.+.. ..+.+.+.|..+......+ +..+..+++.+..
T Consensus 244 ~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 244 TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 11111 234568888888877664 3478888888877766655 1234555555543
No 351
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.14 Score=49.65 Aligned_cols=152 Identities=8% Similarity=-0.065 Sum_probs=90.3
Q ss_pred eeeeeecccc------eee--EEeec---C--CCCceEEEEcCCCCEEEEEeCCCcEEEEe--C-CCCeEEe---eccCC
Q 046394 26 IAREVDILSS------RNQ--YDIML---P--ELGPYTLDFTSSGRYMAAAGCKGYPYFYN--R-DGTELHC---SKEHG 86 (378)
Q Consensus 26 ~i~~~d~~~~------~~~--~~l~~---~--~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~-~~~~~~~---~~~~~ 86 (378)
.+++||++.. +++ +.+.. . ..++.+++.|.+-..+|+|-.+|.|..+. + ...-.+. ..+..
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~ 172 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE 172 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence 6888888644 222 12222 2 34577999999988999999999999986 1 1111122 22223
Q ss_pred CeeEEEE-----EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-eeecCCCEEEEEEe
Q 046394 87 EVLKLQF-----LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-MLCHQGPVSALAFH 159 (378)
Q Consensus 87 ~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-~~~h~~~v~~~~~s 159 (378)
.++.+.+ .++-+..-..|.+|.+....+ ...+..+..+++|..+++....|++++.... +....+.=.|.+|.
T Consensus 173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 3488888 212222346789999874332 4446667778888888887776666666555 33334444556665
Q ss_pred cCCCEEEEEECCCeEEEE
Q 046394 160 PNGHLMATSGKDCKIKIW 177 (378)
Q Consensus 160 p~g~~l~t~~~d~~i~iw 177 (378)
-.++.++....-|.+.+.
T Consensus 253 ~g~kk~~~~~~~g~~L~v 270 (933)
T KOG2114|consen 253 VGEKKEMLVFSFGLLLCV 270 (933)
T ss_pred CCCeEEEEEEecCEEEEE
Confidence 445555554443433333
No 352
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.90 E-value=0.44 Score=47.39 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=106.9
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCCCC--------ceEEEEc----------------CCCCEEEEEeCCCcEE
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELG--------PYTLDFT----------------SSGRYMAAAGCKGYPY 70 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~--------v~~~~~s----------------p~g~~l~~~~~dg~i~ 70 (378)
.+..|.....+.+..+|..|++.+..+...... ...+++. ..+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 455666667899999999999999887654221 1123332 1234788888999999
Q ss_pred EEe-CCCCeEEeeccCCC----------------e-e-EEEE--EEEEEeC----------CCeEEEEEcCCCcEEEEEe
Q 046394 71 FYN-RDGTELHCSKEHGE----------------V-L-KLQF--LLASINK----------LGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 71 iwd-~~~~~~~~~~~~~~----------------~-~-~l~~--~l~s~~~----------d~~i~iwd~~~~~~~~~~~ 119 (378)
-.| .+|+.+..+..... . . -+.+ .++.++. +|.|+-+|+.+|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999 67877765532211 1 1 1112 4555532 6889999999999988775
Q ss_pred cCC-----------------CCe-eEEEEcCCCCEEEEEcCCCe--------------------------------ee--
Q 046394 120 TGL-----------------GRT-DVIRVNPFNGVVSLGHSGGT--------------------------------ML-- 147 (378)
Q Consensus 120 ~~~-----------------~~v-~~~~~s~~~~~l~~~~~d~~--------------------------------~~-- 147 (378)
... ..+ ..+++++...+++.+..+.. +.
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 310 111 34566676666665443221 10
Q ss_pred ecC-------CCEEEEEEec-CCC---EEEEEECCCeEEEEEcCCceeeeee
Q 046394 148 CHQ-------GPVSALAFHP-NGH---LMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 148 ~h~-------~~v~~~~~sp-~g~---~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
.|. ....-+.+.- +|+ .++.++.+|.+.++|.++|+++...
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 110 0011122322 553 6888999999999999999998765
No 353
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.86 E-value=0.0043 Score=37.16 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=29.8
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394 150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV 184 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~ 184 (378)
...|.+++|+|...+||.++.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457899999999999999999999999998 5543
No 354
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.16 Score=44.48 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394 102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG 143 (378)
Q Consensus 102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 143 (378)
|.|+.+|. .+..+..+..+-...+.|+||||++.++.+...
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 33444443 466666665555667889999999877766543
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.83 E-value=0.3 Score=42.87 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=97.6
Q ss_pred eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe--CCCCeEEe----eccCCC-e-e
Q 046394 18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN--RDGTELHC----SKEHGE-V-L 89 (378)
Q Consensus 18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~~~~~~~~----~~~~~~-~-~ 89 (378)
.+.++....|.|.|+...+.+..+... ++..+-=+++ +-+.+-|.||.+.-.. ..|+.... +..... . .
T Consensus 111 V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~ 187 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFE 187 (342)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S
T ss_pred EEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccc
Confidence 344455688888888888888777664 3333322222 3467777899888776 45655422 111112 1 2
Q ss_pred EEEE-----EEEEEeCCCeEEEEEcCCCcEE--EEEec----------CCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394 90 KLQF-----LLASINKLGQLRYQNVTMGEIV--GNFWT----------GLGRTDVIRVNPFNGVVSLGHSGGT------- 145 (378)
Q Consensus 90 ~l~~-----~l~s~~~d~~i~iwd~~~~~~~--~~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~------- 145 (378)
.-.+ .++-.+.+|.|+-.|+...... ..+.. -++.-.-+++++..+.|++.-..|.
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 2232 4555678888888888655432 22211 1234556888887766665433322
Q ss_pred ----------------eeecCCCEEEEEEecCCC-EEEEE-ECCCeEEEEEcCCceeeeee
Q 046394 146 ----------------MLCHQGPVSALAFHPNGH-LMATS-GKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 146 ----------------~~~h~~~v~~~~~sp~g~-~l~t~-~~d~~i~iwd~~~~~~~~~~ 188 (378)
...-..++.+|+++.+.+ +|++. ..++.|.+||..+|+.++++
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 011123567899998766 55444 45789999999999999888
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.79 E-value=0.11 Score=37.38 Aligned_cols=87 Identities=17% Similarity=0.030 Sum_probs=63.3
Q ss_pred CceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE
Q 046394 14 GVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF 93 (378)
Q Consensus 14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~ 93 (378)
|....+..+.|..|++|+-. +.+..+..+ ..|.+++-... ..++.+..+|+|-+|+.. ..++.++....++++.+
T Consensus 14 g~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~RlWRiKSK~~~~~~~~ 88 (111)
T PF14783_consen 14 GENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS-QRLWRIKSKNQVTSMAF 88 (111)
T ss_pred CcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc-ceeeeeccCCCeEEEEE
Confidence 45677888889999998743 566677665 77888887765 578899999999999853 34555555555666655
Q ss_pred ---------EEEEEeCCCeEE
Q 046394 94 ---------LLASINKLGQLR 105 (378)
Q Consensus 94 ---------~l~s~~~d~~i~ 105 (378)
.|++|-.+|.|-
T Consensus 89 ~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EcCCCCCceEEEEEecCCeEE
Confidence 677877777764
No 357
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.057 Score=47.50 Aligned_cols=66 Identities=14% Similarity=0.282 Sum_probs=49.7
Q ss_pred eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC
Q 046394 89 LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG 162 (378)
Q Consensus 89 ~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g 162 (378)
.+++| ++..++.+..|.|.|+++...+..+. .| ..+.+++|.-+.
T Consensus 197 rdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~----------------------------a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 197 RDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI----------------------------AY-NQIWSCCWDLDE 247 (463)
T ss_pred hhhccCccccceeeeeccCceEEEEecccceeeehee----------------------------cc-CCceeeeeccCC
Confidence 66666 67788888888888888877776664 23 567788887744
Q ss_pred -CEEEEEECCCeEEEEEcCCce
Q 046394 163 -HLMATSGKDCKIKIWDLRKYE 183 (378)
Q Consensus 163 -~~l~t~~~d~~i~iwd~~~~~ 183 (378)
+++..|-..|.|.|||++..+
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cceeEEeccCceEEEEEccCCC
Confidence 567777789999999998643
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.73 E-value=0.41 Score=45.68 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=103.9
Q ss_pred eeeEEEeccceeeeeecccceeeEEeecCC-CCce---E-------EEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec
Q 046394 16 EKTWRIKQEAIAREVDILSSRNQYDIMLPE-LGPY---T-------LDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK 83 (378)
Q Consensus 16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~-~~v~---~-------~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~ 83 (378)
+..|....++.|..+|..+++.+....... ..+. + +++. +..+++++.++.|.-.| .+|+.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 345555667889999999999988876421 1111 1 1222 34677888899999999 5788876654
Q ss_pred cC--C---Ce-eE-EEE--EEEEEe------CCCeEEEEEcCCCcEEEEEecCCC-------------------------
Q 046394 84 EH--G---EV-LK-LQF--LLASIN------KLGQLRYQNVTMGEIVGNFWTGLG------------------------- 123 (378)
Q Consensus 84 ~~--~---~~-~~-l~~--~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~------------------------- 123 (378)
.. . .. .. +.+ .++.+. .+|.|..+|..+|+.+..+..-..
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 21 1 11 11 222 344332 368999999999998876543211
Q ss_pred ------Cee-EEEEcCCCCEEEEEcCC-----Ce---------------------------eeecC-------CCEEEEE
Q 046394 124 ------RTD-VIRVNPFNGVVSLGHSG-----GT---------------------------MLCHQ-------GPVSALA 157 (378)
Q Consensus 124 ------~v~-~~~~s~~~~~l~~~~~d-----~~---------------------------~~~h~-------~~v~~~~ 157 (378)
.+. .+++.|...+++.+..+ +. ...|. ....-+.
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 111 34777777777777644 11 11111 1112223
Q ss_pred EecCCC---EEEEEECCCeEEEEEcCCceeee
Q 046394 158 FHPNGH---LMATSGKDCKIKIWDLRKYEVLQ 186 (378)
Q Consensus 158 ~sp~g~---~l~t~~~d~~i~iwd~~~~~~~~ 186 (378)
+..+|+ .++.++.+|.+.+.|..+|+++.
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 334666 67789999999999999999874
No 359
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.1 Score=49.82 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=39.4
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCC
Q 046394 150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKD 201 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g 201 (378)
...+..+.+||+.++|+-=..+|.|.+-+....+.+..+ +.+...++|.-+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 356778889999999999899998888888777777666 4455567776544
No 360
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.66 E-value=0.46 Score=42.57 Aligned_cols=182 Identities=12% Similarity=0.025 Sum_probs=88.0
Q ss_pred ceeeeeecccceeeEEeecCCCCce-----EEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEeeccCCCe--eEEEE-
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPY-----TLDFTSSGRYMAAAGC-KG--YPYFYNRDGTELHCSKEHGEV--LKLQF- 93 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~-----~~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~--~~l~~- 93 (378)
+.-...|..||..+..|..+..... .=+|.+||+.|+.++. +| .+++.|+....+..|....+. .....
T Consensus 10 ~~~~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s 89 (386)
T PF14583_consen 10 EFKTWIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLS 89 (386)
T ss_dssp -EEEEE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-
T ss_pred ceeEEeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEe
Confidence 3445568889988888876543332 3367889977666555 55 566677777777777665432 22222
Q ss_pred ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEE--cCCCCEEEEEcC---CCe-------------------
Q 046394 94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRV--NPFNGVVSLGHS---GGT------------------- 145 (378)
Q Consensus 94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~---d~~------------------- 145 (378)
.++-...+..|.-.|+.+.+....+......+....| +.++..++..-. +..
T Consensus 90 ~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 90 PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 3333334567888899888765555555555554555 345665543221 111
Q ss_pred -------------eeecCCCEEEEEEec-CCCEEEEEEC---CC-eEEEEEcCC-ceeeeee--c---CCceEEEEecCC
Q 046394 146 -------------MLCHQGPVSALAFHP-NGHLMATSGK---DC-KIKIWDLRK-YEVLQTL--P---GHAKTLDFSRKD 201 (378)
Q Consensus 146 -------------~~~h~~~v~~~~~sp-~g~~l~t~~~---d~-~i~iwd~~~-~~~~~~~--~---~~i~~~~~sp~g 201 (378)
+..-...+..+.|+| +...|+-|-. +. .-|||-+++ +.....+ + ..+.-=-|+|||
T Consensus 170 i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG 249 (386)
T ss_dssp EEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS
T ss_pred EEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC
Confidence 333456678899999 4555555543 22 237787664 4444444 1 234455788998
Q ss_pred Ccccc
Q 046394 202 SGDFS 206 (378)
Q Consensus 202 ~~~~~ 206 (378)
....+
T Consensus 250 ~~i~y 254 (386)
T PF14583_consen 250 STIWY 254 (386)
T ss_dssp S-EEE
T ss_pred CEEEE
Confidence 86433
No 361
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.65 E-value=0.46 Score=42.53 Aligned_cols=179 Identities=11% Similarity=-0.017 Sum_probs=83.5
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-eccCCCe-eEEEE-------E
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKEHGEV-LKLQF-------L 94 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~-~~l~~-------~ 94 (378)
...+...|+.+++...--.+.........++|+++.++-......|+..|+....... +....+. ....| .
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~ 138 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK 138 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE
Confidence 4667888998887654444333344467788988887665555678888865544433 3333332 12222 1
Q ss_pred EEE----------------------EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE-EEEEcCCCe------
Q 046394 95 LAS----------------------INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV-VSLGHSGGT------ 145 (378)
Q Consensus 95 l~s----------------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~------ 145 (378)
++. +.-...|.-.|+.+|+....+. ....+..+.|+|.... |+.+.....
T Consensus 139 ~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~R 217 (386)
T PF14583_consen 139 LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQR 217 (386)
T ss_dssp EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-S
T ss_pred EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceE
Confidence 111 1112456677888887655554 4466778889986644 333332211
Q ss_pred -------------eeecC--CCEEEEEEecCCCEEEEEE-----CCCeEEEEEcCCceeeeeec-CCceEEEEecCCCc
Q 046394 146 -------------MLCHQ--GPVSALAFHPNGHLMATSG-----KDCKIKIWDLRKYEVLQTLP-GHAKTLDFSRKDSG 203 (378)
Q Consensus 146 -------------~~~h~--~~v~~~~~sp~g~~l~t~~-----~d~~i~iwd~~~~~~~~~~~-~~i~~~~~sp~g~~ 203 (378)
+..|. ..+..=-|.|||..|.--+ .+..|.-+|+.++....... ....-+.-++||..
T Consensus 218 iW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L 296 (386)
T PF14583_consen 218 IWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKL 296 (386)
T ss_dssp EEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSE
T ss_pred EEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCE
Confidence 11111 2234446889998765433 24467778888876533222 23334445666664
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.64 E-value=0.12 Score=46.60 Aligned_cols=144 Identities=13% Similarity=0.168 Sum_probs=80.3
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCeEEeeccCC-CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394 54 TSSGRYMAAA---------GCKGYPYFYNRDGTELHCSKEHG-EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNF 118 (378)
Q Consensus 54 sp~g~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~-~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~ 118 (378)
|||+++++.. +..+.+.|||+....+..+.... ......| .++.. .++.|.++++.++...+.-
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEec
Confidence 6888887763 22457899997777666665543 3366667 44443 3578999988777544322
Q ss_pred ecC-----------------CCCeeEEEEcCCCCEEEEEcCCCe---------eeecCC---CEEEEEEecCCCEEEEEE
Q 046394 119 WTG-----------------LGRTDVIRVNPFNGVVSLGHSGGT---------MLCHQG---PVSALAFHPNGHLMATSG 169 (378)
Q Consensus 119 ~~~-----------------~~~v~~~~~s~~~~~l~~~~~d~~---------~~~h~~---~v~~~~~sp~g~~l~t~~ 169 (378)
... -+.-..+.|||||+.|+....|.. ...... .+..+.+---|.-....
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v- 158 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV- 158 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE-
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce-
Confidence 111 123467889999999988776654 001110 23333331122211111
Q ss_pred CCCeEEEEEcCCceeee-ee-------cCCceEEEEecCCC
Q 046394 170 KDCKIKIWDLRKYEVLQ-TL-------PGHAKTLDFSRKDS 202 (378)
Q Consensus 170 ~d~~i~iwd~~~~~~~~-~~-------~~~i~~~~~sp~g~ 202 (378)
.+.|+|+.+++... .. ...+..+.|++++.
T Consensus 159 ---~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 159 ---SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp ---EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred ---EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 46778888776532 11 24578899999988
No 363
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.59 E-value=0.0096 Score=55.88 Aligned_cols=88 Identities=24% Similarity=0.237 Sum_probs=70.6
Q ss_pred EEEEEeCCCeEEEEEcCCCcEE-EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCC
Q 046394 94 LLASINKLGQLRYQNVTMGEIV-GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGP 152 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~ 152 (378)
+++.|+.-|.+++|+-..+... ....+..+.+..+..|++..++|.|+..|. ...|...
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~r 126 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCR 126 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCce
Confidence 8889999999999997666543 223334566677788999999999888887 3347889
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 153 VSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
|++++|++++..+.+|...|.|.+--+.+
T Consensus 127 VTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEEEecccccEEeecCCCceEEEEEech
Confidence 99999999999999999999988776655
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.56 E-value=0.47 Score=44.94 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=64.1
Q ss_pred cceeeeeecccceeeEEeecCCCC--------------------c-eEEEEcCCCCEEEEEeCCC---------------
Q 046394 24 EAIAREVDILSSRNQYDIMLPELG--------------------P-YTLDFTSSGRYMAAAGCKG--------------- 67 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~--------------------v-~~~~~sp~g~~l~~~~~dg--------------- 67 (378)
++.+..+|..+++.++........ + .+.++.+.+..+++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 567889999999998887653110 1 1345555566788887665
Q ss_pred ---cEEEEe-CCCCeEEeeccC-C------Cee-----EEE-E------EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 68 ---YPYFYN-RDGTELHCSKEH-G------EVL-----KLQ-F------LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 68 ---~i~iwd-~~~~~~~~~~~~-~------~~~-----~l~-~------~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
.|.-+| .+|+.+..+... . ... .+. . .++.++.+|.+...|..+|+.+....
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 688888 577777765421 1 101 111 1 46777889999999999999887764
No 365
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.54 E-value=0.2 Score=45.75 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=32.8
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
-.+.+++.+|++++.|+...=|.|.++|+.++..++.+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 44788999999998888877889999999998887776
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.018 Score=53.51 Aligned_cols=86 Identities=20% Similarity=0.121 Sum_probs=72.1
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-e-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-V-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF 118 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~ 118 (378)
..+.-+.|+|.-..||++..+|.|.++..+-+.+.++..|.. + .+++| ++|.|-.||+|++.|+.++..+..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 467899999999999999999999999988889999986665 4 59999 9999999999999999999887774
Q ss_pred ec-CCCCeeEEEEc
Q 046394 119 WT-GLGRTDVIRVN 131 (378)
Q Consensus 119 ~~-~~~~v~~~~~s 131 (378)
.. ....|.++.|+
T Consensus 101 ~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 101 LFSVETDISKGIWD 114 (665)
T ss_pred ccccccchheeecc
Confidence 22 33566777776
No 367
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.51 E-value=0.28 Score=40.30 Aligned_cols=126 Identities=11% Similarity=0.106 Sum_probs=75.6
Q ss_pred CceEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEE-
Q 046394 47 GPYTLDFTSSGRYMAAAGC----------KGYPYFYNRDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQN- 108 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd- 108 (378)
..+.-..+|+|++.+ |.. .|.++.|-..++. ..+...-++ +.++| +.++-+.+-+|.-||
T Consensus 110 R~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceee-eeeccccccccccccEEEEeccCCCc-eeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 344556789999843 322 2344555443332 223333344 77888 666777788887787
Q ss_pred -cCCCcE-----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394 109 -VTMGEI-----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY 182 (378)
Q Consensus 109 -~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~ 182 (378)
..+|.. +..+... .|. .+ ...-.+++..+|++.+++-..++|...|..+|
T Consensus 188 d~~tG~~snr~~i~dlrk~---------~~~--------------e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKS---------QPF--------------ES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG 243 (310)
T ss_pred CCCcccccCcceeEEeccC---------CCc--------------CC-CCCCcceEccCCcEEEEEecCcEEEEECCCCC
Confidence 555543 2222110 000 11 11123455668999999988999999999999
Q ss_pred eeeeee---cCCceEEEEe
Q 046394 183 EVLQTL---PGHAKTLDFS 198 (378)
Q Consensus 183 ~~~~~~---~~~i~~~~~s 198 (378)
+.+.++ ...++|++|-
T Consensus 244 K~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 244 KILLEIKLPTPQITSCCFG 262 (310)
T ss_pred cEEEEEEcCCCceEEEEec
Confidence 998877 3567777774
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.46 E-value=0.56 Score=45.31 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCe
Q 046394 46 LGPYTLDFTSSGRYMAAAG------CKG--YPYFYNRDGTE 78 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~------~dg--~i~iwd~~~~~ 78 (378)
..+.+.++||+|..+|..- .|+ .|.+++..+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~ 390 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA 390 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc
Confidence 4577999999999877654 233 45555654433
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.29 Score=41.41 Aligned_cols=163 Identities=16% Similarity=0.163 Sum_probs=97.2
Q ss_pred cceeeeeecccceeeEEeecCCCCce--EEEEcCCCCEEEEEeC-----CCcEEEEeCCC--CeEEeeccCC-CeeEEEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPY--TLDFTSSGRYMAAAGC-----KGYPYFYNRDG--TELHCSKEHG-EVLKLQF 93 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~--~~~~sp~g~~l~~~~~-----dg~i~iwd~~~--~~~~~~~~~~-~~~~l~~ 93 (378)
.-...++|..+.+....+....+.-+ .=.|||||.+|+..-. -|.|-|||... ..+-.+..|. ++..+.+
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~l 169 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTL 169 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEE
Confidence 44566777777776665543322111 3368999999887643 36899999543 2334455555 3466666
Q ss_pred -----EEEEEeC------------------CCeEEEEEcCCCcEEEEEe----cCCCCeeEEEEcCCCCEEEEEcCCCe-
Q 046394 94 -----LLASINK------------------LGQLRYQNVTMGEIVGNFW----TGLGRTDVIRVNPFNGVVSLGHSGGT- 145 (378)
Q Consensus 94 -----~l~s~~~------------------d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~- 145 (378)
.++.+.. .-++.+.|..+|+.+.+.. .+.-.+..++..+||...+.+-..|.
T Consensus 170 m~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~ 249 (366)
T COG3490 170 MADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR 249 (366)
T ss_pred ecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence 3333221 1234455655666554332 23456888999999988877665554
Q ss_pred -----ee--------------------ecCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCCceeee
Q 046394 146 -----ML--------------------CHQGPVSALAFHPNGHLMA-TSGKDCKIKIWDLRKYEVLQ 186 (378)
Q Consensus 146 -----~~--------------------~h~~~v~~~~~sp~g~~l~-t~~~d~~i~iwd~~~~~~~~ 186 (378)
+. .....|-+|+.+.+..+++ |+-..+...+||..+|..+.
T Consensus 250 ~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 250 NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 11 1224466788876444544 44455678899998887644
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.42 E-value=0.72 Score=42.13 Aligned_cols=201 Identities=11% Similarity=0.054 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeC-----CC---------------------Ce------------------EEee
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNR-----DG---------------------TE------------------LHCS 82 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~-----~~---------------------~~------------------~~~~ 82 (378)
.|..+.|+++..-|++|...|.|.||.. .+ .. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4778899998888999999999888861 11 00 0111
Q ss_pred ccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe--c------CCCCeeEEEEc-----CCC---CEEEEEc
Q 046394 83 KEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFW--T------GLGRTDVIRVN-----PFN---GVVSLGH 141 (378)
Q Consensus 83 ~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~s-----~~~---~~l~~~~ 141 (378)
....+. ++++. +++.|..+|.+.|.|++....+..-. . ....++++.|+ .|+ -.+++|+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 112222 55555 89999999999999998777766522 1 12356677776 233 3788888
Q ss_pred CCCe---------------------eeecCCCEEEEE-EecC-----------------C---CEEEEEECCCeEEEEEc
Q 046394 142 SGGT---------------------MLCHQGPVSALA-FHPN-----------------G---HLMATSGKDCKIKIWDL 179 (378)
Q Consensus 142 ~d~~---------------------~~~h~~~v~~~~-~sp~-----------------g---~~l~t~~~d~~i~iwd~ 179 (378)
..|. ...+.++|..+. |+.+ | +-++....+..++|+..
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 8887 223556665554 3221 1 12344444677999998
Q ss_pred CCceeeeee-cC--C---------------ceEEEEecCCCccccCCCCCceEEEeecc---CCcceeeeEEcCCCCeEE
Q 046394 180 RKYEVLQTL-PG--H---------------AKTLDFSRKDSGDFSGSHNYNRYMGYSMV---KGYQIGKVSFRPYEDVLG 238 (378)
Q Consensus 180 ~~~~~~~~~-~~--~---------------i~~~~~sp~g~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~ 238 (378)
.+.+..+.. .. . ..=+++..+|...++.....+.+.....+ ....+....++++|+.++
T Consensus 243 ~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~ 322 (395)
T PF08596_consen 243 PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFY 322 (395)
T ss_dssp T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEE
T ss_pred CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEE
Confidence 877665544 11 1 11234455677777777777766665541 123456778889998777
Q ss_pred EecCCCeEE
Q 046394 239 IGHSMGVSG 247 (378)
Q Consensus 239 ~~~~~g~~~ 247 (378)
-.+......
T Consensus 323 ~~gpsE~~l 331 (395)
T PF08596_consen 323 WTGPSEIQL 331 (395)
T ss_dssp E-SSSEEEE
T ss_pred EeCcccEEE
Confidence 666655433
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.46 Score=39.71 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=64.5
Q ss_pred CCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe--eEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEc
Q 046394 57 GRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV--LKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVN 131 (378)
Q Consensus 57 g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~--~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 131 (378)
..+++.|+..+.+.-.| .+|.....--....+ ..+.. +++.|...|.+++.+..+|.....+.....--......
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 35778888888888888 566665443222222 33434 88899999999999999998777776443333345678
Q ss_pred CCCCEEEEEcCCCe
Q 046394 132 PFNGVVSLGHSGGT 145 (378)
Q Consensus 132 ~~~~~l~~~~~d~~ 145 (378)
+++..+..|+.|+.
T Consensus 103 ~~~glIycgshd~~ 116 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGN 116 (354)
T ss_pred CCCceEEEecCCCc
Confidence 99999999999998
No 372
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.38 E-value=0.32 Score=41.55 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=51.0
Q ss_pred CceEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEE-EcCCCcEE-E
Q 046394 47 GPYTLDFTSSGRYMAAAG---CKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQ-NVTMGEIV-G 116 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iw-d~~~~~~~-~ 116 (378)
.+.+.++|++|..+|... ....++++...+.....+.+. ......| +.+....+....++ +..++... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~-~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG-SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC-ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999999777655 333566665544443333322 2244555 33333344445555 33333321 1
Q ss_pred EEecC-C-CCeeEEEEcCCCCEEEEEc
Q 046394 117 NFWTG-L-GRTDVIRVNPFNGVVSLGH 141 (378)
Q Consensus 117 ~~~~~-~-~~v~~~~~s~~~~~l~~~~ 141 (378)
.+... . ..|..+.+||||..++...
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEE
Confidence 22211 1 2788888888887666544
No 373
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.38 E-value=0.0023 Score=59.21 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=99.6
Q ss_pred CCceEEEEcCCCC--EEEEEeCCCcEEEEeCCCC--e-EEeeccCCCe-eEEEE------EEEEEe----CCCeEEEEEc
Q 046394 46 LGPYTLDFTSSGR--YMAAAGCKGYPYFYNRDGT--E-LHCSKEHGEV-LKLQF------LLASIN----KLGQLRYQNV 109 (378)
Q Consensus 46 ~~v~~~~~sp~g~--~l~~~~~dg~i~iwd~~~~--~-~~~~~~~~~~-~~l~~------~l~s~~----~d~~i~iwd~ 109 (378)
..+.|++++-+.+ .+++|..+|.|-+-..... . .....++... ++++| .||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4567887765443 6788888999998873221 1 2233445555 88999 455542 3678999999
Q ss_pred CCC--cEEE--EEec-CCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEec-CCCEEEEEEC
Q 046394 110 TMG--EIVG--NFWT-GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHP-NGHLMATSGK 170 (378)
Q Consensus 110 ~~~--~~~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp-~g~~l~t~~~ 170 (378)
.++ .+.. .|.. .....++++|..+.+++.+|..... ..-....+..+.++| .++|+++-.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 876 2211 2222 3345668899988888888877654 111123456678888 788888877
Q ss_pred CCeEEEEE-cCCce-eeeee-------cCCceEEEEecCC
Q 046394 171 DCKIKIWD-LRKYE-VLQTL-------PGHAKTLDFSRKD 201 (378)
Q Consensus 171 d~~i~iwd-~~~~~-~~~~~-------~~~i~~~~~sp~g 201 (378)
||.|.+|| .++-+ ++..+ ...+..++|+|..
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 99999999 44432 33333 1347888998854
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.26 E-value=0.16 Score=43.43 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=71.5
Q ss_pred CeeEEEEcCCCCEEEEEc--CCCe------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE-cCCceeee-e
Q 046394 124 RTDVIRVNPFNGVVSLGH--SGGT------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD-LRKYEVLQ-T 187 (378)
Q Consensus 124 ~v~~~~~s~~~~~l~~~~--~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd-~~~~~~~~-~ 187 (378)
.+...+++++++.++... .++. ...-...++...|+++|...+....+...+++- ..++.... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 577888999888766655 3333 111223667788999987666666666666663 33433322 2
Q ss_pred e----c-CCceEEEEecCCCccccCC----------------CCC------ceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394 188 L----P-GHAKTLDFSRKDSGDFSGS----------------HNY------NRYMGYSMVKGYQIGKVSFRPYEDVLGIG 240 (378)
Q Consensus 188 ~----~-~~i~~~~~sp~g~~~~~~~----------------~~~------~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 240 (378)
+ . ..|.++.+||||.....-. ... .++..... ....+.++.|.+++.+++.+
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~-~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP-LLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc-ccCcceeeeecCCCEEEEEe
Confidence 2 1 2799999999998621110 111 11111111 24578899999999887776
Q ss_pred cCCC
Q 046394 241 HSMG 244 (378)
Q Consensus 241 ~~~g 244 (378)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 6554
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.77 Score=40.33 Aligned_cols=129 Identities=14% Similarity=0.072 Sum_probs=77.3
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEec---
Q 046394 50 TLDFTSSGRYMAAA-GCKGYPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWT--- 120 (378)
Q Consensus 50 ~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~--- 120 (378)
+..|.++...|+.+ -..+.|.-|+........+...... ..+.+ .|+++.. -+.+++..++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 44677877755444 4477888888765555555555554 33333 5555543 356677666655333321
Q ss_pred --CCCCeeEEEEcCCCCEEEEEcC---CCe---------------------eeecCCCEEEEEEecCCCEEEEEEC-CCe
Q 046394 121 --GLGRTDVIRVNPFNGVVSLGHS---GGT---------------------MLCHQGPVSALAFHPNGHLMATSGK-DCK 173 (378)
Q Consensus 121 --~~~~v~~~~~s~~~~~l~~~~~---d~~---------------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~~ 173 (378)
.....+.+...|+|.+.++... .+. +..+-..-+.|+||||++.|..+.. .+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 1245678889999887776555 111 1112223457999999987766654 477
Q ss_pred EEEEEcC
Q 046394 174 IKIWDLR 180 (378)
Q Consensus 174 i~iwd~~ 180 (378)
|.-|++.
T Consensus 187 i~r~~~d 193 (307)
T COG3386 187 IHRYDLD 193 (307)
T ss_pred EEEEecC
Confidence 8888775
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.055 Score=53.57 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=64.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeE---EeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEE
Q 046394 57 GRYMAAAGCKGYPYFYNRDGTEL---HCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVI 128 (378)
Q Consensus 57 g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 128 (378)
+..++.|++.|.|...|.+|..- .......++++++| .++.|-.+|.|.+||+.++..++.+..+..+...+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 55789999999999999776532 11222233499999 77788889999999999999988887766555443
Q ss_pred ---EEcCCCCEEEEEcCCCe
Q 046394 129 ---RVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 129 ---~~s~~~~~l~~~~~d~~ 145 (378)
.+..++..++++...|.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc
Confidence 45556667777766664
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=0.76 Score=39.05 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=70.0
Q ss_pred EEEEeCCCe-EEEEEcCCCcEEEEEecCCCC--eeEEEEcCCCCEEEEEcCCCe--------------------eeecCC
Q 046394 95 LASINKLGQ-LRYQNVTMGEIVGNFWTGLGR--TDVIRVNPFNGVVSLGHSGGT--------------------MLCHQG 151 (378)
Q Consensus 95 l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~ 151 (378)
++.+-.-|+ ..++|....+...++....+. .-.=.|||||.+|+..-.|-. +..|.-
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi 162 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI 162 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCc
Confidence 333444444 457888877766555443322 223579999999887655433 455555
Q ss_pred CEEEEEEecCCCEEEEEEC------C------------CeEEEEEcCCceeeeee-------cCCceEEEEecCCCc
Q 046394 152 PVSALAFHPNGHLMATSGK------D------------CKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG 203 (378)
Q Consensus 152 ~v~~~~~sp~g~~l~t~~~------d------------~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~ 203 (378)
....+.|.+||+.++.+.. | -++.+.|..+|.++... +-++..+...+||..
T Consensus 163 GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv 239 (366)
T COG3490 163 GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV 239 (366)
T ss_pred CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence 6678999999999887643 1 14666676777776544 246777888888763
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=0.024 Score=46.10 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=36.2
Q ss_pred CCEEEEEeCCCcEEEEeCC--CCeEEeeccCCCeeEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394 57 GRYMAAAGCKGYPYFYNRD--GTELHCSKEHGEVLKLQF-------LLASINKLGQLRYQNVTMGEIVGNF 118 (378)
Q Consensus 57 g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~ 118 (378)
+.-+++|+.+|.|++|+.. |.....+........+-+ +..+++.||.|+.|++.-.+.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 4568889999999999854 221111111111111111 5677788899999888665554443
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.06 E-value=0.14 Score=49.27 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=50.4
Q ss_pred CCeeEEEEcCCCCEEEEEc------CCCe---ee----e------cCCCEEEEEEecCCCEEEEEECC------------
Q 046394 123 GRTDVIRVNPFNGVVSLGH------SGGT---ML----C------HQGPVSALAFHPNGHLMATSGKD------------ 171 (378)
Q Consensus 123 ~~v~~~~~s~~~~~l~~~~------~d~~---~~----~------h~~~v~~~~~sp~g~~l~t~~~d------------ 171 (378)
..+...+++|+|..++... .+.. .. + .....+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 4577889999998776654 1222 10 0 11236778999998888777533
Q ss_pred CeEEEEEcCCceeeeeecCCceEEEEecCCCc
Q 046394 172 CKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSG 203 (378)
Q Consensus 172 ~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~ 203 (378)
+.+.+.++..+.....+...|..+.|||||..
T Consensus 430 gql~~~~vd~ge~~~~~~g~Issl~wSpDG~R 461 (591)
T PRK13616 430 GQLARTPVDASAVASRVPGPISELQLSRDGVR 461 (591)
T ss_pred ceEEEEeccCchhhhccCCCcCeEEECCCCCE
Confidence 23333344443332233467999999999996
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.86 Score=38.95 Aligned_cols=100 Identities=9% Similarity=0.038 Sum_probs=65.3
Q ss_pred cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec--cCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcE
Q 046394 43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK--EHGEVLKLQF-----LLASINKLGQLRYQNVTMGEI 114 (378)
Q Consensus 43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~--~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~ 114 (378)
+-...+.++.|+|+.+.|++....+.-.|+= .+|..+.++. +..++-.+.| +.++--.+..+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 3345689999999999888877777666654 8888887754 4444566667 444444577777776654422
Q ss_pred EE-----EEe-----cCCCCeeEEEEcCCCCEEEEEcC
Q 046394 115 VG-----NFW-----TGLGRTDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 115 ~~-----~~~-----~~~~~v~~~~~s~~~~~l~~~~~ 142 (378)
+. .++ ..+.....++|+|....|+++-.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 11 111 12456778999998877666543
No 381
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=1.2 Score=40.65 Aligned_cols=157 Identities=12% Similarity=0.101 Sum_probs=100.9
Q ss_pred CCceEEEEcCCCCEEEE-EeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE------EEEEEe--CCCeEEEEEcCCCcEE
Q 046394 46 LGPYTLDFTSSGRYMAA-AGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF------LLASIN--KLGQLRYQNVTMGEIV 115 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~-~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~------~l~s~~--~d~~i~iwd~~~~~~~ 115 (378)
....++++++.+..+++ ...++.|.+.|. .....+...-...+..+++ ..++-. .++++.+.|..+...+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 34568889998885444 444688999993 3344444333334455666 333333 4789999999988888
Q ss_pred EEEecCCCCeeEEEEcCCCCEEEEEcC-CCe----------ee-ec-------CCCEEEEEEecCCCEEEEEE-CC--Ce
Q 046394 116 GNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT----------ML-CH-------QGPVSALAFHPNGHLMATSG-KD--CK 173 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~----------~~-~h-------~~~v~~~~~sp~g~~l~t~~-~d--~~ 173 (378)
........+ ..++++|+|..+++... ++. +. .+ ......+.++|+|.++.... .+ +.
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 775544444 88999999997776663 333 11 11 11235678899998655443 33 58
Q ss_pred EEEEEcCCceeeee-e--cC-CceEEEEecCCCc
Q 046394 174 IKIWDLRKYEVLQT-L--PG-HAKTLDFSRKDSG 203 (378)
Q Consensus 174 i~iwd~~~~~~~~~-~--~~-~i~~~~~sp~g~~ 203 (378)
+...|..++..... + .. ....+.++|+|.+
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 99999988777665 2 22 4567788888775
No 382
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.93 E-value=0.15 Score=50.02 Aligned_cols=33 Identities=12% Similarity=0.344 Sum_probs=28.1
Q ss_pred cCCCEEEEEEecC---CCEEEEEECCCeEEEEEcCC
Q 046394 149 HQGPVSALAFHPN---GHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 149 h~~~v~~~~~sp~---g~~l~t~~~d~~i~iwd~~~ 181 (378)
+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 3457889999995 57899999999999999975
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.11 Score=51.59 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEc
Q 046394 45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNV 109 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~ 109 (378)
.++|.+++|+.+|+.++.|-.+|.|.+||. .+..++.+..|..+ +++-+ .++++...|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 478999999999999999999999999995 45777777777665 44433 4666655554 4443
No 384
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.71 E-value=0.16 Score=46.39 Aligned_cols=125 Identities=8% Similarity=0.044 Sum_probs=76.0
Q ss_pred ceeeeeecccceeeEEeecCCCCceEEEEcCCCC-------EEEEEeCCCcEEEEe--CCCCeEEeeccC-----CCeeE
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-------YMAAAGCKGYPYFYN--RDGTELHCSKEH-----GEVLK 90 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-------~l~~~~~dg~i~iwd--~~~~~~~~~~~~-----~~~~~ 90 (378)
..++-.|+.-|+.+-....|... -+.|.|+.. .-++|-++..|.-.| ..|..+...... ...++
T Consensus 490 ~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss 567 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSS 567 (776)
T ss_pred ccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccc
Confidence 34555677778888777777444 566776532 234565666777777 456555443222 11222
Q ss_pred EEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEE
Q 046394 91 LQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMA 166 (378)
Q Consensus 91 l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~ 166 (378)
..- ++|.+|.-|-|++||--.-.....++ +....|..+..+.+|.+++
T Consensus 568 ~~tTesGyIa~as~kGDirLyDRig~rAKtalP----------------------------~lG~aIk~idvta~Gk~il 619 (776)
T COG5167 568 GMTTESGYIAAASRKGDIRLYDRIGKRAKTALP----------------------------GLGDAIKHIDVTANGKHIL 619 (776)
T ss_pred cccccCceEEEecCCCceeeehhhcchhhhcCc----------------------------ccccceeeeEeecCCcEEE
Confidence 222 99999999999999953222222222 4455677788888888766
Q ss_pred EEECCCeEEEEEcC
Q 046394 167 TSGKDCKIKIWDLR 180 (378)
Q Consensus 167 t~~~d~~i~iwd~~ 180 (378)
+.+ ...|.+-|++
T Consensus 620 aTC-k~yllL~d~~ 632 (776)
T COG5167 620 ATC-KNYLLLTDVP 632 (776)
T ss_pred Eee-cceEEEEecc
Confidence 554 4457777765
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.65 E-value=1.4 Score=38.62 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=66.3
Q ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEc-CCCcEEEE
Q 046394 45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHGEVLKLQF----LLASINKLGQLRYQNV-TMGEIVGN 117 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~-~~~~~~~~ 117 (378)
.+.+..+..++||+++++++.-....-||.-. -..+.......+..|.| .+......|.|+.=+. ........
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc
Confidence 35678888999999988886544445677432 33344444445588888 3333447788887762 12222111
Q ss_pred --Eec--CCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394 118 --FWT--GLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIW 177 (378)
Q Consensus 118 --~~~--~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw 177 (378)
... ..-.+..++|.+++...++|+.... ...-...++.|.|.++.+ -...+.+|.|.-|
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 111 1223688899999888877766544 111234577888876544 4444567766544
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.53 E-value=1.1 Score=43.36 Aligned_cols=88 Identities=10% Similarity=0.038 Sum_probs=47.5
Q ss_pred ceeeeeecccceeeEEeecCC-CCceEEEEcCCCCEEEEEeCC-C-----cEEEEeCCCCeEEeecc---CCCeeEEEE-
Q 046394 25 AIAREVDILSSRNQYDIMLPE-LGPYTLDFTSSGRYMAAAGCK-G-----YPYFYNRDGTELHCSKE---HGEVLKLQF- 93 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~d-g-----~i~iwd~~~~~~~~~~~---~~~~~~l~~- 93 (378)
..+..+|..++.......... ....++++. ++...++||.| | ++..||.....-..+.. .....+++.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 567788888775443322221 223345544 35677888888 3 67778854443222211 111122222
Q ss_pred ---EEEEEeCCCe-----EEEEEcCCCc
Q 046394 94 ---LLASINKLGQ-----LRYQNVTMGE 113 (378)
Q Consensus 94 ---~l~s~~~d~~-----i~iwd~~~~~ 113 (378)
+.|.||.||. +-.||..+.+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCc
Confidence 7888888864 5566665443
No 387
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.41 E-value=0.071 Score=30.96 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=25.9
Q ss_pred CCEEEEEEecCC---CEEEEEECCCeEEEEEcCC
Q 046394 151 GPVSALAFHPNG---HLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 151 ~~v~~~~~sp~g---~~l~t~~~d~~i~iwd~~~ 181 (378)
+.|.++.|||++ .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999843 4888888889999999995
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.31 E-value=0.84 Score=42.79 Aligned_cols=128 Identities=12% Similarity=0.136 Sum_probs=71.9
Q ss_pred CceEEEEcCCCCE-EEEEe--CCCcEEEEeCCCCeEEeeccCCCeeEEEE---------EEEEEeCCCeEEEEEcCC---
Q 046394 47 GPYTLDFTSSGRY-MAAAG--CKGYPYFYNRDGTELHCSKEHGEVLKLQF---------LLASINKLGQLRYQNVTM--- 111 (378)
Q Consensus 47 ~v~~~~~sp~g~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~l~~---------~l~s~~~d~~i~iwd~~~--- 111 (378)
++.+++|. ||+. +++.- .+|.+.+=| -..+.....+..+.| .+++......|.+|.+..
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCC-----ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 67788986 4554 44432 133333322 112222233455666 344455667899998752
Q ss_pred --CcEEEEEecC---C--CCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEE
Q 046394 112 --GEIVGNFWTG---L--GRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSG 169 (378)
Q Consensus 112 --~~~~~~~~~~---~--~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~ 169 (378)
.+.+..-..+ . --...+.|+|....|++-+.... -....+.|.|.+|.+||+.|+.+-
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence 2222221111 1 12345789998888776555444 123457799999999999877654
Q ss_pred CCC-eEEEEEcC
Q 046394 170 KDC-KIKIWDLR 180 (378)
Q Consensus 170 ~d~-~i~iwd~~ 180 (378)
... .-+|||-.
T Consensus 175 GSsLHSyiWd~~ 186 (671)
T PF15390_consen 175 GSSLHSYIWDSA 186 (671)
T ss_pred CCeEEEEEecCc
Confidence 332 45688753
No 389
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.26 E-value=2.8 Score=40.09 Aligned_cols=92 Identities=10% Similarity=0.058 Sum_probs=58.0
Q ss_pred cceeeeeecccceeeEEeecCC-------------------------------CCce-EEEEcCCCCEEEEEeCC-----
Q 046394 24 EAIAREVDILSSRNQYDIMLPE-------------------------------LGPY-TLDFTSSGRYMAAAGCK----- 66 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~-------------------------------~~v~-~~~~sp~g~~l~~~~~d----- 66 (378)
++.|..+|..+++.+..+..-. ..+. .+++.|...+|+.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 5789999999999887754311 1122 45777766677666533
Q ss_pred C-----------cEEEEe-CCCCeEEeeccCC-Ce---------eEEE--E------EEEEEeCCCeEEEEEcCCCcEE
Q 046394 67 G-----------YPYFYN-RDGTELHCSKEHG-EV---------LKLQ--F------LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 67 g-----------~i~iwd-~~~~~~~~~~~~~-~~---------~~l~--~------~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
+ .|.-.| .+|+....++... +. .-+. . .++.+..+|.+++.|-.+|+.+
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 444455 3566665554322 11 1111 1 6778899999999999999886
No 390
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.14 E-value=1.8 Score=36.76 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=84.2
Q ss_pred eeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394 88 VLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT--------------- 145 (378)
Q Consensus 88 ~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~--------------- 145 (378)
++.+.| ++++....+.|..++. +|+.+..+... .+....|++..++.++++.-.++.
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 588888 7888888899988897 58888887654 366888999888877766544444
Q ss_pred ----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC---ceeeeee-----------cCCceEEEEecCC
Q 046394 146 ----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK---YEVLQTL-----------PGHAKTLDFSRKD 201 (378)
Q Consensus 146 ----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~---~~~~~~~-----------~~~i~~~~~sp~g 201 (378)
...++..+-.++|+|.++.|+.+-...-..||.+.. ...+... -..+.+++++|..
T Consensus 103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence 112445688999999877777777666666776653 2222111 2356888888865
Q ss_pred Cc-----------cccCCCCCceEEEeeccC--------CcceeeeEEcCCCCeEEEec
Q 046394 202 SG-----------DFSGSHNYNRYMGYSMVK--------GYQIGKVSFRPYEDVLGIGH 241 (378)
Q Consensus 202 ~~-----------~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~g~~l~~~~ 241 (378)
.. ...+ ..+.++..+.... -...-.|+|.++|.+.+++-
T Consensus 183 ~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 183 GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 42 1112 2333433333211 12456788888886555543
No 391
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.95 E-value=2.2 Score=36.85 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=87.6
Q ss_pred ccceeeeeecccceeeEEe-------------e-cCCCCceEEE--EcCCC-CEEEEEeCCCcEEEEeCCC------CeE
Q 046394 23 QEAIAREVDILSSRNQYDI-------------M-LPELGPYTLD--FTSSG-RYMAAAGCKGYPYFYNRDG------TEL 79 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~~~l-------------~-~~~~~v~~~~--~sp~g-~~l~~~~~dg~i~iwd~~~------~~~ 79 (378)
.++.+.++++......... . ....++...+ -.+.+ ..|+++ ....|.+|.... ...
T Consensus 54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccccee
Confidence 3588888888766554411 0 1123344444 11233 345544 445888887321 345
Q ss_pred EeeccCCCeeEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-----------CeeEEEEcCCCCEEEEEcCCCe
Q 046394 80 HCSKEHGEVLKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLG-----------RTDVIRVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 80 ~~~~~~~~~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~d~~ 145 (378)
..+.-...+.++.| .++.|.. ....+.|+.++.....+..... ....+.--+++.+|++-..-|.
T Consensus 133 ke~~lp~~~~~i~~~~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~ 211 (275)
T PF00780_consen 133 KEISLPDPPSSIAFLGNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGV 211 (275)
T ss_pred EEEEcCCCcEEEEEeCCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEE
Confidence 56666666688888 5666554 4578899987766544422111 1222323334556655443333
Q ss_pred eeecC------------CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 146 MLCHQ------------GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 146 ~~~h~------------~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
+.... ..+.++++. ..||+..+. +.|-||++.++++++++
T Consensus 212 fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred EEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEE
Confidence 22211 123344443 336666554 55999999999988887
No 392
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.89 E-value=2.6 Score=37.44 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=50.4
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce-eeeee--cC--CceEEEEecCCCcc------------ccCCCC
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE-VLQTL--PG--HAKTLDFSRKDSGD------------FSGSHN 210 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~-~~~~~--~~--~i~~~~~sp~g~~~------------~~~~~~ 210 (378)
...++|++++-- +| +|+.+. ++.|.+|++...+ ....- +. .+.++... +.+. -|+...
T Consensus 86 ~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 86 EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT
T ss_pred eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC
Confidence 446778887665 34 344433 4778888887766 43322 23 33444333 3221 111111
Q ss_pred CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394 211 YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250 (378)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~ 250 (378)
......-+......++++.|-++++.+++++.+|.+.++-
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 1111111111345588888887777888888888766554
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.88 E-value=2.1 Score=36.35 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=62.8
Q ss_pred eeeEEE-eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC--C----
Q 046394 16 EKTWRI-KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG--E---- 87 (378)
Q Consensus 16 ~~~~~~-~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~---- 87 (378)
++.|.+ |..+..-+||..+.+.+.++... +.-+.++ .||..|+.+..+..++.+|. +-.....+.-.. .
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 344444 77899999999999888887664 4556776 55767777666778999995 334444433221 1
Q ss_pred eeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 88 VLKLQF----LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 88 ~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
.+-+.| +.|-.-....|...|..+|+.+..+.
T Consensus 177 LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 177 LNELEYINGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred cEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 255666 55555566778888888888877664
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.83 E-value=0.53 Score=43.00 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=58.1
Q ss_pred eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-------------------------eEE
Q 046394 38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-------------------------LKL 91 (378)
Q Consensus 38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-------------------------~~l 91 (378)
.+.|......+.+|+.+|++++.|+...-|.|.++|. .+..++.+++-.+. ...
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 4445555556889999999999999888899999994 44444444433221 111
Q ss_pred EEEEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394 92 QFLLASINKLGQLRYQNVTMGEIVGNFWT 120 (378)
Q Consensus 92 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 120 (378)
-|+++-+-.-|.|.||++++|..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 22555667789999999999988887764
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.81 E-value=2.6 Score=36.96 Aligned_cols=201 Identities=15% Similarity=0.152 Sum_probs=90.0
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe---eccCCC--e--eEEEE----EEEEEeCCCeEEEEEcCCCcE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC---SKEHGE--V--LKLQF----LLASINKLGQLRYQNVTMGEI 114 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~--~--~~l~~----~l~s~~~d~~i~iwd~~~~~~ 114 (378)
..+..|.|..+.+-+++| ..|.|.. ..+|..-.. ...... . .++.| .+++ +..+. .+...+.|+.
T Consensus 17 ~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~iv-G~~g~-ll~T~DgG~t 92 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIV-GEPGL-LLHTTDGGKT 92 (302)
T ss_dssp S-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETTEEEEE-EETTE-EEEESSTTSS
T ss_pred CceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCCceEEE-cCCce-EEEecCCCCC
Confidence 467899998555556665 4554432 233332211 111111 1 55666 3333 34443 2333334443
Q ss_pred EEEEe---cCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 115 VGNFW---TGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 115 ~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
-..+. ..++....+....++..++++..... ...-.+.+..+..+++|+++++++....+.-||
T Consensus 93 W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~ 172 (302)
T PF14870_consen 93 WERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWD 172 (302)
T ss_dssp -EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-
T ss_pred cEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEec
Confidence 33322 11233334443334433333322222 333456788888899999998888777777888
Q ss_pred cCC--ceeeeee-cCCceEEEEecCCCccccCCCCCce--------EEEeec------cCCcceeeeEEcCCCCeEEEec
Q 046394 179 LRK--YEVLQTL-PGHAKTLDFSRKDSGDFSGSHNYNR--------YMGYSM------VKGYQIGKVSFRPYEDVLGIGH 241 (378)
Q Consensus 179 ~~~--~~~~~~~-~~~i~~~~~sp~g~~~~~~~~~~~~--------~~~~~~------~~~~~v~~~~~sp~g~~l~~~~ 241 (378)
--. ..+.... ...+.++.|+|++..-+.. +.... ...+.. .....+.+++|.+++...|+|+
T Consensus 173 ~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 173 PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred CCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 642 3333333 6789999999998752221 11111 111111 0223478899999988888777
Q ss_pred CCCeEEEEEcCCC
Q 046394 242 SMGVSGILIPGSG 254 (378)
Q Consensus 242 ~~g~~~~~~~~s~ 254 (378)
.. .+++|..+
T Consensus 252 ~G---~l~~S~Dg 261 (302)
T PF14870_consen 252 SG---TLLVSTDG 261 (302)
T ss_dssp TT----EEEESST
T ss_pred Cc---cEEEeCCC
Confidence 76 44555443
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.75 E-value=0.96 Score=41.65 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=68.0
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC--------EEEEEcCCCee------ee-------cCCC
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG--------VVSLGHSGGTM------LC-------HQGP 152 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~d~~~------~~-------h~~~ 152 (378)
++..++....++-.|+..|+.+..+..+..- -+.|.|+.. .|+-.+..+.+ .+ ....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 5667777788888999999999988876544 577777532 34444444431 01 1111
Q ss_pred EEEEEEec----CCCEEEEEECCCeEEEEEcCC---ceeeeeecCCceEEEEecCCCcccc
Q 046394 153 VSALAFHP----NGHLMATSGKDCKIKIWDLRK---YEVLQTLPGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 153 v~~~~~sp----~g~~l~t~~~d~~i~iwd~~~---~~~~~~~~~~i~~~~~sp~g~~~~~ 206 (378)
++--.||. ..-|+|.+|..|-|++||--. ...+-.++..|..+..+.+|.+.+.
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 11112222 234899999999999999532 2223333566777777778775333
No 397
>PHA02713 hypothetical protein; Provisional
Probab=94.54 E-value=0.99 Score=43.53 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=15.2
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCe
Q 046394 56 SGRYMAAAGCKG-----YPYFYNRDGTE 78 (378)
Q Consensus 56 ~g~~l~~~~~dg-----~i~iwd~~~~~ 78 (378)
+|...+.||.++ .+..||.....
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 566777787654 47888865443
No 398
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=1.2 Score=45.65 Aligned_cols=62 Identities=8% Similarity=0.193 Sum_probs=52.1
Q ss_pred cCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------------------ee-ecCCCEEEEEEecCCC
Q 046394 120 TGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------------------ML-CHQGPVSALAFHPNGH 163 (378)
Q Consensus 120 ~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------------------~~-~h~~~v~~~~~sp~g~ 163 (378)
.....|+|+....+|+.|++|-+++. +. .+..+|..+++...-+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 34567899998889999888877765 33 5677999999998888
Q ss_pred EEEEEECCCeEEEEEcCC
Q 046394 164 LMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 164 ~l~t~~~d~~i~iwd~~~ 181 (378)
.+.+-+..|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 999999999999999976
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.38 E-value=1.4 Score=40.03 Aligned_cols=81 Identities=9% Similarity=0.057 Sum_probs=45.8
Q ss_pred CCeEEEEEcCCCcEEEEEecCCC--CeeEEEEc--CCCCEEEEEcCCCe-------------------------------
Q 046394 101 LGQLRYQNVTMGEIVGNFWTGLG--RTDVIRVN--PFNGVVSLGHSGGT------------------------------- 145 (378)
Q Consensus 101 d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s--~~~~~l~~~~~d~~------------------------------- 145 (378)
..++.+||+.+.+.++++..... .+..+.|. |+..+-++++.-..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 46899999999999999886543 34556665 44555444443322
Q ss_pred ------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC
Q 046394 146 ------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRK 181 (378)
Q Consensus 146 ------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~ 181 (378)
+..-..-|+.|.+|.|.++|..+. .+|.|+.||+..
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 011135579999999999986655 789999999976
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.37 E-value=1.2 Score=43.06 Aligned_cols=120 Identities=9% Similarity=-0.086 Sum_probs=59.3
Q ss_pred ceeeeeecccceeeEEeecCCCCce-EEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEeeccCCC---e-eEEEE-
Q 046394 25 AIAREVDILSSRNQYDIMLPELGPY-TLDFTSSGRYMAAAGCKG-----YPYFYNRDGTELHCSKEHGE---V-LKLQF- 93 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l~~~~~~v~-~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~---~-~~l~~- 93 (378)
..+..||..+.+....-........ +++ .-+|...|+||.|| +|-.||.....-........ . ....+
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG 427 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC
Confidence 4566777777663321111111111 111 12577888998887 57778865544333221211 1 22233
Q ss_pred --EEEEEeCC------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394 94 --LLASINKL------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 94 --~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 145 (378)
+.+.||.+ .++..||..+......-+-.......-.-.-++.++++|+.++.
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGT 487 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCC
Confidence 66677654 35677887776543322211122222233445667777777663
No 401
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.25 E-value=0.19 Score=41.08 Aligned_cols=80 Identities=10% Similarity=-0.066 Sum_probs=47.5
Q ss_pred CCeeecCCceeeEEEeccceeeeeecccceeeEEeecC-CCCceE-EEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeec
Q 046394 7 GGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLP-ELGPYT-LDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSK 83 (378)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~-~~~v~~-~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~ 83 (378)
.||-......+.+.+..++.|.+|+..-.-....+... ...|.+ +.--.++.+..+++.+|.|+.|+. .+..+....
T Consensus 62 e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 62 EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred cceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 45666666777888888999999887622222111111 122222 222234457889999999999994 344444444
Q ss_pred cCC
Q 046394 84 EHG 86 (378)
Q Consensus 84 ~~~ 86 (378)
.|.
T Consensus 142 ~h~ 144 (238)
T KOG2444|consen 142 QHN 144 (238)
T ss_pred ccc
Confidence 454
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.41 Score=48.17 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=75.9
Q ss_pred CCceEEEEcCCCCEEEEEeC--CCcEEEEeCCCCe------EEeeccCC-----Ce--eEEEE------EEEEEeCCCeE
Q 046394 46 LGPYTLDFTSSGRYMAAAGC--KGYPYFYNRDGTE------LHCSKEHG-----EV--LKLQF------LLASINKLGQL 104 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~--dg~i~iwd~~~~~------~~~~~~~~-----~~--~~l~~------~l~s~~~d~~i 104 (378)
..+..+...+|+...++... +-.|..||+..-+ -.-|..|. .+ .++.| ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34566777788776554433 3368888842211 11111111 11 55666 66777888989
Q ss_pred EEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------e----eecCCCEEEEEEecCCCEEE
Q 046394 105 RYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------M----LCHQGPVSALAFHPNGHLMA 166 (378)
Q Consensus 105 ~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~----~~h~~~v~~~~~sp~g~~l~ 166 (378)
.+..+..... +..+ ......++++|+|.|..+++|..+|. + ....+.|.+|+|-..-.+++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 8887654322 2332 23467899999999999999999998 0 01146789999987665655
Q ss_pred E
Q 046394 167 T 167 (378)
Q Consensus 167 t 167 (378)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 4
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.15 E-value=2.3 Score=41.08 Aligned_cols=115 Identities=10% Similarity=0.139 Sum_probs=65.1
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EeeccCCCeeEEEE-------EEEEEeCCCeEEEEEcCCCcEE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL---HCSKEHGEVLKLQF-------LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
..+.-+.-|.-++..++-+....+.|||..+..+ ..+..+..+.++.| .+++.|..+.|.+|.-......
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 4555566666565555544555799999655443 23433445588998 6777778888888854211100
Q ss_pred EEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecC-CCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394 116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQ-GPVSALAFHPNGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~-~~v~~~~~sp~g~~l~t~~~d~~i~iwd~ 179 (378)
... ..-..+..+..+ .|. .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 110 ~~~-p~w~~i~~i~i~----------------~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKG-PSWAPIRKIDIS----------------SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCC-cccceeEEEEee----------------cCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 000 001122223221 232 578889999999655544 355777764
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.97 E-value=1.5 Score=41.30 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=67.6
Q ss_pred CCeeEEEEcCCCCEEEEEcC--CCe-------eeecCCCEEEEEEecCC----CEEEEEECCCeEEEEEcCC-----cee
Q 046394 123 GRTDVIRVNPFNGVVSLGHS--GGT-------MLCHQGPVSALAFHPNG----HLMATSGKDCKIKIWDLRK-----YEV 184 (378)
Q Consensus 123 ~~v~~~~~s~~~~~l~~~~~--d~~-------~~~h~~~v~~~~~sp~g----~~l~t~~~d~~i~iwd~~~-----~~~ 184 (378)
.++..++|..-.+.+.+.-. +|. ..+.-..|..+.|.|-+ --|++......|.||.+-. .+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~ 99 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKL 99 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccc
Confidence 35556666654454444321 111 33445568889998842 2466666677899998752 222
Q ss_pred eeee--------cCCceEEEEecCCCcc----------ccCCC-CCceE-EEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394 185 LQTL--------PGHAKTLDFSRKDSGD----------FSGSH-NYNRY-MGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 185 ~~~~--------~~~i~~~~~sp~g~~~----------~~~~~-~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g 244 (378)
+..- +--...+.|+|..... +.+.. +...+ .... ..+.|.|.+|.+||..|+++-...
T Consensus 100 l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSs 177 (671)
T PF15390_consen 100 LMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSS 177 (671)
T ss_pred eeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCe
Confidence 2211 1123667888877641 11111 11111 1222 356799999999999887776654
Q ss_pred e
Q 046394 245 V 245 (378)
Q Consensus 245 ~ 245 (378)
.
T Consensus 178 L 178 (671)
T PF15390_consen 178 L 178 (671)
T ss_pred E
Confidence 3
No 405
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.96 E-value=0.5 Score=43.70 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=37.5
Q ss_pred EEEEEecCCCEEEEE-ECCC----eEEEEEcCCceeeeee-c-CCceEEEEecCCCcccc
Q 046394 154 SALAFHPNGHLMATS-GKDC----KIKIWDLRKYEVLQTL-P-GHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~-~~d~----~i~iwd~~~~~~~~~~-~-~~i~~~~~sp~g~~~~~ 206 (378)
..+.+||+|+++|.+ +..| .|+++|+.+++.+... . .....+.|.+|+...++
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEE
Confidence 357889999987754 4444 6999999999887644 2 33344999999875433
No 406
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.84 E-value=0.019 Score=53.41 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=77.5
Q ss_pred eccceeeeeecccc--e--eeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe--e--ccCCCeeEEE
Q 046394 22 KQEAIAREVDILSS--R--NQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC--S--KEHGEVLKLQ 92 (378)
Q Consensus 22 ~~~~~i~~~d~~~~--~--~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~--~~~~~~~~l~ 92 (378)
-.+..+.+||+.++ . ....+.. ...+..+++|-.+.+++++|.....+.++|........ + +.|.+.+---
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDP 205 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecC
Confidence 34566888998877 1 1122222 33566789999888899999988899999954322221 1 1233332222
Q ss_pred E---EEEEEeCCCeEEEEE-cCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC-CEEE
Q 046394 93 F---LLASINKLGQLRYQN-VTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG-HLMA 166 (378)
Q Consensus 93 ~---~l~s~~~d~~i~iwd-~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g-~~l~ 166 (378)
| ++++ ..||.|-+|| ...- .++..+..... .....+..++|+|.. -.++
T Consensus 206 ~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N------------------------~~~~~l~~~aycPtrtglla 260 (783)
T KOG1008|consen 206 FSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNEN------------------------KKPKQLFALAYCPTRTGLLA 260 (783)
T ss_pred CCCCceec-cccCceeeccchhhhccHHHHHhhCCC------------------------CcccceeeEEeccCCcchhh
Confidence 2 4544 4599999999 3322 22222221111 112246778888832 2455
Q ss_pred EEEC-CCeEEEEEcC
Q 046394 167 TSGK-DCKIKIWDLR 180 (378)
Q Consensus 167 t~~~-d~~i~iwd~~ 180 (378)
+++. .++|+++|+.
T Consensus 261 ~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 261 VLSRDSITIRLYDIC 275 (783)
T ss_pred hhccCcceEEEeccc
Confidence 5554 4588899875
No 407
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.27 E-value=6.8 Score=36.22 Aligned_cols=175 Identities=14% Similarity=0.054 Sum_probs=95.8
Q ss_pred eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc---CCCe-eE----EEE---E
Q 046394 26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE---HGEV-LK----LQF---L 94 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~-~~----l~~---~ 94 (378)
.|++|+. .|..+..+.-..+.+.++.|+.+.. |++-..||.+++||..|.....+.. ..++ .+ ..+ -
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 5888875 5666777766568999999998654 5566689999999977766111110 1111 11 111 1
Q ss_pred EEEEeCCCeEEEEEcCCCc-EEEE---EecCC------CCeeE-EEEcCCCCEEEEEcCCCe---eeec-------CCCE
Q 046394 95 LASINKLGQLRYQNVTMGE-IVGN---FWTGL------GRTDV-IRVNPFNGVVSLGHSGGT---MLCH-------QGPV 153 (378)
Q Consensus 95 l~s~~~d~~i~iwd~~~~~-~~~~---~~~~~------~~v~~-~~~s~~~~~l~~~~~d~~---~~~h-------~~~v 153 (378)
++.-..++.+.+.+--... .... +.... ..... ..++.+....+....++. +..+ .+++
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i 219 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPI 219 (410)
T ss_pred EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCCCe
Confidence 2222234444433221111 1111 11100 01111 235555554444444333 2122 3679
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCce--eeeee--cCCceEEEEecCCC
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYE--VLQTL--PGHAKTLDFSRKDS 202 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~--~~~~~--~~~i~~~~~sp~g~ 202 (378)
..|++||+|+++|.-..+|.+.|....-.+ +-... ...+..+.|.-+..
T Consensus 220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 220 IKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 999999999999999999998888654322 22333 45556666666544
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.20 E-value=0.074 Score=51.79 Aligned_cols=119 Identities=14% Similarity=0.103 Sum_probs=66.3
Q ss_pred ecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEe---CCCCeEEeeccC-----C-CeeEEEE--------EEEEEeCCCe
Q 046394 42 MLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYN---RDGTELHCSKEH-----G-EVLKLQF--------LLASINKLGQ 103 (378)
Q Consensus 42 ~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd---~~~~~~~~~~~~-----~-~~~~l~~--------~l~s~~~d~~ 103 (378)
++..++|-.+.|-.. ...++ -.-|.+.||+ +.|+....+--| . .+.-+.| ++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 344556666666321 11111 2235788998 455543222111 1 1233444 5555666788
Q ss_pred EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394 104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR 180 (378)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~ 180 (378)
|++.++.+... ..|..|...+..++|-..|-.++ -.+||||..|++++.||.++.|.+.
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l-----------------~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKL-----------------ASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhh-----------------eeeCCCCcEEEEeecCCccceeeee
Confidence 88877654322 23344666666665544432111 1279999999999999998888763
No 409
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.17 E-value=5.9 Score=38.85 Aligned_cols=85 Identities=7% Similarity=0.057 Sum_probs=59.5
Q ss_pred EEEEEeCCCeEEEEEcCC-------C-------------cEEEEEecCCCCeeEEEEc--CCCCEEEEEcCCCe------
Q 046394 94 LLASINKLGQLRYQNVTM-------G-------------EIVGNFWTGLGRTDVIRVN--PFNGVVSLGHSGGT------ 145 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~------ 145 (378)
.|+.|.+||.|.+|.+.+ . ++...+. -...++.++++ ...++||+++....
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 888999999999997632 1 0111221 23578899998 77778888777665
Q ss_pred -----------eeecCCCEEEEEEecC-----CC-EEEEEECCCeEEEEEc
Q 046394 146 -----------MLCHQGPVSALAFHPN-----GH-LMATSGKDCKIKIWDL 179 (378)
Q Consensus 146 -----------~~~h~~~v~~~~~sp~-----g~-~l~t~~~d~~i~iwd~ 179 (378)
-..|...|.+|+|-++ |. ++++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1124456888999773 32 7888999999988887
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.12 E-value=0.59 Score=38.87 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEe-------e-------cCCCCceEEEEcCCCCEEEEEeCCC
Q 046394 2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDI-------M-------LPELGPYTLDFTSSGRYMAAAGCKG 67 (378)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l-------~-------~~~~~v~~~~~sp~g~~l~~~~~dg 67 (378)
.+++..-+|...+ ...+.++.+|.+++||+.+++.++.- . .....|..+.++.+|.-|++-+ +|
T Consensus 10 ~Lgs~~~~l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 10 VLGSPVSFLECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred ecCCceEEEEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 4566666666544 44888999999999999998775442 1 1234455666666665544433 45
Q ss_pred cEEEEeCC
Q 046394 68 YPYFYNRD 75 (378)
Q Consensus 68 ~i~iwd~~ 75 (378)
..+.|+.+
T Consensus 88 ~~y~y~~~ 95 (219)
T PF07569_consen 88 DSYSYSPD 95 (219)
T ss_pred CEEEeccc
Confidence 56666643
No 411
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.07 E-value=6.3 Score=35.25 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE 78 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~ 78 (378)
.+++|+|.|||+.++ +...|.|++++.++..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~ 33 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSL 33 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcC
Confidence 468999999997655 4569999999955543
No 412
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.05 E-value=0.0069 Score=54.57 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=83.5
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF------LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
.++....|-|.+.-++.++.+..+..||..++..-.+.-......++| .++.+-..+.+.+||+.+... .++.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE 113 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE 113 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence 455677888988779999999999999976665544433333344444 555666778999999975322 1121
Q ss_pred -cCCCCeeEEEEcCCCCEEEEEcCCCe-------------eee-cCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394 120 -TGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLC-HQGPVSALAFHPNGHLMATSGKDCKIK 175 (378)
Q Consensus 120 -~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~-h~~~v~~~~~sp~g~~l~t~~~d~~i~ 175 (378)
+....-.-+.|++....++.+...+. ..| |...++++++.+.+ +.+.++.|..+.
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~ 183 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS 183 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHH
Confidence 11222223677777777776655444 334 88899999999987 566666665443
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.91 E-value=0.35 Score=28.14 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=24.6
Q ss_pred CCceEEEEcCCC---CEEEEEeCCCcEEEEeCC
Q 046394 46 LGPYTLDFTSSG---RYMAAAGCKGYPYFYNRD 75 (378)
Q Consensus 46 ~~v~~~~~sp~g---~~l~~~~~dg~i~iwd~~ 75 (378)
++|.++.|||+. .+|+.+-..|.|.|+|..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 468899999854 488888888999999954
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=3.4 Score=38.40 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC---CEEEEEECCCeEEEEEcCCceeeeee
Q 046394 121 GLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG---HLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 121 ~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g---~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
....|+|=.++-+.+++.+. ..-.+..++|+|+. ..|+.-+.|++|||||+...+.+...
T Consensus 144 gk~~v~CRt~~i~~~~ftss--------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 144 GKSTVNCRTTPVAERFFTSS--------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred CCceEEEEeecccceeeccC--------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 33445565555544443321 12245678899964 67888889999999999876655433
No 415
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.72 E-value=6 Score=34.12 Aligned_cols=58 Identities=22% Similarity=0.227 Sum_probs=35.6
Q ss_pred CCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcE
Q 046394 55 SSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEI 114 (378)
Q Consensus 55 p~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~ 114 (378)
..++.|+.|..+| +++++. .......+.....+..+.. .+++- .|+.+.++++..-..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEP 68 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcc
Confidence 3578899998888 999996 3333333333323544444 22222 349999999876443
No 416
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.66 E-value=0.79 Score=26.30 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=26.7
Q ss_pred cCCCEEEEE-ECCCeEEEEEcCCceeeeee--cCCceEEEE
Q 046394 160 PNGHLMATS-GKDCKIKIWDLRKYEVLQTL--PGHAKTLDF 197 (378)
Q Consensus 160 p~g~~l~t~-~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~ 197 (378)
|++++|.++ ..+++|.++|..+++.+..+ ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 567765554 46889999999988888777 344555554
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=4.4 Score=37.02 Aligned_cols=89 Identities=8% Similarity=0.128 Sum_probs=54.2
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCccccCCCCCceEE------
Q 046394 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSGDFSGSHNYNRYM------ 215 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~~~~~~~~~~~~~------ 215 (378)
..++|.++.||+|.+.+|.--.|.+|.+++....+....+ ...|....|+.+....+........+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekr 144 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKR 144 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhh
Confidence 4579999999999999999999999999987432222111 234666677665433222211112121
Q ss_pred ---EeeccCCcceeeeEEcCCCCeEE
Q 046394 216 ---GYSMVKGYQIGKVSFRPYEDVLG 238 (378)
Q Consensus 216 ---~~~~~~~~~v~~~~~sp~g~~l~ 238 (378)
.... +...|+-..|+|+...+.
T Consensus 145 slRlVks-~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 145 SLRLVKS-HNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhh-cccCccEEEEccccceEe
Confidence 1122 445577788888876543
No 418
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.23 E-value=7.1 Score=33.85 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCeeecCC----ceeeEEEeccceeeeeeccccee-----eEEeec-CCCCce-EEEEcCC--CCEEEEEe-CCCcEEEE
Q 046394 7 GGYLEAEG----VEKTWRIKQEAIAREVDILSSRN-----QYDIML-PELGPY-TLDFTSS--GRYMAAAG-CKGYPYFY 72 (378)
Q Consensus 7 ~~~l~~~~----~~~~~~~~~~~~i~~~d~~~~~~-----~~~l~~-~~~~v~-~~~~sp~--g~~l~~~~-~dg~i~iw 72 (378)
.+|.++.+ ....+..+.+++|.-|...-... ...+.. ....|+ .+++... +.+|+.+. .++.|-|+
T Consensus 88 ~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 88 DTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred CceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 44545442 33467778899999998533222 122322 235666 5666543 56666553 48899999
Q ss_pred eCCCCeEEe---eccC-----CCeeEEEE----EEEE-------------EeCCCeEEEEEcCCCcEEEEEecCCCCeeE
Q 046394 73 NRDGTELHC---SKEH-----GEVLKLQF----LLAS-------------INKLGQLRYQNVTMGEIVGNFWTGLGRTDV 127 (378)
Q Consensus 73 d~~~~~~~~---~~~~-----~~~~~l~~----~l~s-------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 127 (378)
|.+-.++.. +... -.+..+.- ++++ +..-|.|-++|+ .|+.++.+...
T Consensus 168 d~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~------ 240 (336)
T TIGR03118 168 KGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS------ 240 (336)
T ss_pred cCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC------
Confidence 955444322 1111 11111111 1111 112245666665 45555555321
Q ss_pred EEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec------CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 128 IRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP------NGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 128 ~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp------~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
+.-...+.|+..| .|.+|+---.||+|..||..++..+-.+
T Consensus 241 --------------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 241 --------------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred --------------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 1122234444443 4666766667999999999988876655
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.05 E-value=7 Score=33.32 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=69.2
Q ss_pred eEEEEcCCCCEEEEEeCCC--cEEEEeC-CCCeEEeeccCCCe--eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394 49 YTLDFTSSGRYMAAAGCKG--YPYFYNR-DGTELHCSKEHGEV--LKLQF----LLASINKLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 49 ~~~~~sp~g~~l~~~~~dg--~i~iwd~-~~~~~~~~~~~~~~--~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~ 119 (378)
.++.|..+|.++-+.|.-| .|+.+|. +|..+....-.... -.+.. ++.-.-.++...+||..+.+.+.++.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 3888877888877877766 6888994 55555444433332 34444 44455678999999999999888876
Q ss_pred cCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 120 TGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 120 ~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
.. + .+ ..++ .+|..|+.+.....|.++|..+.+...++
T Consensus 128 y~-~--------------------------EG--WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 128 YP-G--------------------------EG--WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp -S-S--------------------------S----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred cC-C--------------------------cc--eEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence 32 1 11 3444 45666666666778888888877766655
No 420
>PRK13684 Ycf48-like protein; Provisional
Probab=91.81 E-value=9.2 Score=34.23 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=67.2
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEE-EeCCCCeEEeeccCC--CeeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYF-YNRDGTELHCSKEHG--EVLKLQF----LLASINKLGQLRYQNVTMGEIVGNF 118 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~--~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~ 118 (378)
..++++.+.|++.+++++ ..|.+.. ++..+..-..+.... ..+++.+ .++..+..|.+.+=....|......
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc
Confidence 457789999998777665 4565543 233333222232222 2266666 3333445676643223344432222
Q ss_pred ecC----CCCeeEEEEcCCCCEEEEEcCCCe------------ee---ecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 119 WTG----LGRTDVIRVNPFNGVVSLGHSGGT------------ML---CHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 119 ~~~----~~~v~~~~~s~~~~~l~~~~~d~~------------~~---~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
... ...+..+.+.|++..++++..... .. .-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred cCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 211 134677888888776665543322 11 1112356666665555444 55577776664
No 421
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.62 E-value=11 Score=34.79 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=47.4
Q ss_pred ceeeeeecccceeeEEe-ecCCCCceEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCe---EEeeccCCCe-
Q 046394 25 AIAREVDILSSRNQYDI-MLPELGPYTLDFTSSGRYMAAAGCKG-----------YPYFYNRDGTE---LHCSKEHGEV- 88 (378)
Q Consensus 25 ~~i~~~d~~~~~~~~~l-~~~~~~v~~~~~sp~g~~l~~~~~dg-----------~i~iwd~~~~~---~~~~~~~~~~- 88 (378)
..++++|+.+++.+... .. ....++.|.++++.|+....+. .|+.|.+.... ...+......
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~ 227 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF 227 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred EEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence 45999999999765432 22 1222499999988766554433 26777743221 2333333322
Q ss_pred --eEEEE------EEEEEeC--C-CeEEEEEcCCC
Q 046394 89 --LKLQF------LLASINK--L-GQLRYQNVTMG 112 (378)
Q Consensus 89 --~~l~~------~l~s~~~--d-~~i~iwd~~~~ 112 (378)
..+.. +++.... + ..+.+.|+..+
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 23333 3433333 3 45888888764
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.24 E-value=2.7 Score=42.69 Aligned_cols=106 Identities=8% Similarity=-0.004 Sum_probs=64.5
Q ss_pred EEEEEeCCCeEEEEEcCCCcE--------EE---EEecCCCCeeEEEEcCCCC-EEEEEcCCCe--------------ee
Q 046394 94 LLASINKLGQLRYQNVTMGEI--------VG---NFWTGLGRTDVIRVNPFNG-VVSLGHSGGT--------------ML 147 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~--------~~---~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~--------------~~ 147 (378)
.++..+.+-.|..||+..... +. +.........++.|+|.-. ..++...|+. -.
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~ 195 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF 195 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence 334444455788999875321 11 1111234567888888653 3444444544 11
Q ss_pred ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecC
Q 046394 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRK 200 (378)
Q Consensus 148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~ 200 (378)
.....+++++|+|.|+.++.|-..|++.-|-. +++....+ ...|.+|+|-..
T Consensus 196 p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecc
Confidence 23456789999999999999999999888754 33333333 256777777543
No 423
>PHA03098 kelch-like protein; Provisional
Probab=91.02 E-value=8.8 Score=36.93 Aligned_cols=59 Identities=3% Similarity=-0.075 Sum_probs=30.5
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEeeccC---CCe-eEEEE---EEEEEeCC------CeEEEEEcCCCcE
Q 046394 56 SGRYMAAAGCK-----GYPYFYNRDGTELHCSKEH---GEV-LKLQF---LLASINKL------GQLRYQNVTMGEI 114 (378)
Q Consensus 56 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~---~~~-~~l~~---~l~s~~~d------~~i~iwd~~~~~~ 114 (378)
++..++.||.+ ..+..||.....-...... ... ....+ +++.||.+ ..+..||+.+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 56677777765 2577788544332222211 111 22223 55556532 4578889876543
No 424
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=6.8 Score=35.87 Aligned_cols=137 Identities=11% Similarity=0.095 Sum_probs=80.0
Q ss_pred CCCCCeeecCCceeeEEEeccceeeeeecccc--eeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 046394 4 PSEGGYLEAEGVEKTWRIKQEAIAREVDILSS--RNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH 80 (378)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~ 80 (378)
|+-+|.+-.+.....+.+...+..- |-+... ....++. ...++|.+|.||+|.+.||+--.+.+|.+++..+....
T Consensus 23 pesngvFfDDaNkqlfavrSggatg-vvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 23 PESNGVFFDDANKQLFAVRSGGATG-VVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred CcccceeeccCcceEEEEecCCeeE-EEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 5556666655555566655544322 222111 2222232 23468999999999999999999999999996433221
Q ss_pred ee---c--cCCC-eeEEEE----EEEEEeCCCeEEEEEcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394 81 CS---K--EHGE-VLKLQF----LLASINKLGQLRYQNVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 81 ~~---~--~~~~-~~~l~~----~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 142 (378)
.. . ..+. +....| -+|..++.| +-+|.+.. ...++....+...|+...|.++.+.+..++.
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 11 1 1111 345555 344443333 55565443 2345555667788999999999886554443
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.77 E-value=8.6 Score=31.97 Aligned_cols=175 Identities=10% Similarity=0.045 Sum_probs=91.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEcC--CCcEEEEEec-----C
Q 046394 58 RYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNVT--MGEIVGNFWT-----G 121 (378)
Q Consensus 58 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~~--~~~~~~~~~~-----~ 121 (378)
.++.+--..|.|.-||.....+........+ .++.+ +.+.++.--.|--||-. ......++.. .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 3455555567777788554444332222221 22333 34444444445556632 2223333211 1
Q ss_pred CCCeeEEEEcCCCCEEEEEcCCCe-------------eeecC--------CCEEEEEEecCCCEE-EEEECCCeEEEEE-
Q 046394 122 LGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQ--------GPVSALAFHPNGHLM-ATSGKDCKIKIWD- 178 (378)
Q Consensus 122 ~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~--------~~v~~~~~sp~g~~l-~t~~~d~~i~iwd- 178 (378)
....+.-..+|+|++++-.-.+-. +.+|. +.-+.++|+.+.+.+ ++-+.+-.|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 345667778999998554333332 22332 222467888766654 4556677887787
Q ss_pred -cCCceee-----eee-------cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCC
Q 046394 179 -LRKYEVL-----QTL-------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPY 233 (378)
Q Consensus 179 -~~~~~~~-----~~~-------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 233 (378)
..+|... ..+ +.....++...+|.. ...+..++..+..+.. ....|++++|---
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecCC
Confidence 5555442 222 112233344444443 3345567777777777 6777999998643
No 426
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.66 E-value=7.8 Score=35.98 Aligned_cols=31 Identities=29% Similarity=0.530 Sum_probs=25.5
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~ 181 (378)
..|.+++..+..+.+++.+.+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999974
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.65 E-value=13 Score=33.81 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.3
Q ss_pred CCceEEEEcCCCCEEEEE
Q 046394 46 LGPYTLDFTSSGRYMAAA 63 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~ 63 (378)
..+..|+|.++|+++++-
T Consensus 14 ~~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCCceeeECCCCCEEEEe
Confidence 467799999999876664
No 428
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.07 E-value=23 Score=35.84 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=77.5
Q ss_pred cEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEE-ecCCCCeeEEEEcCCC---C---
Q 046394 68 YPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNF-WTGLGRTDVIRVNPFN---G--- 135 (378)
Q Consensus 68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~---~--- 135 (378)
.|++++..+ .+..+....+. ...++ .++.++.++.+...++..+...... ..-...|.|+.++|-| +
T Consensus 471 ~iRl~ss~~-~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 471 SIRLVSSAG-LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred cEEEEcchh-hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcce
Confidence 466666442 23334434443 33333 6777777788888888766522211 1234679999999752 2
Q ss_pred EEEEEcCCCe-----------eeecC--------CCEEEEEEecCCCEEEEEECCCeEEEE--EcCCceee--e--ee-c
Q 046394 136 VVSLGHSGGT-----------MLCHQ--------GPVSALAFHPNGHLMATSGKDCKIKIW--DLRKYEVL--Q--TL-P 189 (378)
Q Consensus 136 ~l~~~~~d~~-----------~~~h~--------~~v~~~~~sp~g~~l~t~~~d~~i~iw--d~~~~~~~--~--~~-~ 189 (378)
++++|..+.. +..|. ..|.-.+|-.|..+|.++..||.+.-| |..+|..- + .+ .
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt 629 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT 629 (1096)
T ss_pred EEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCC
Confidence 6777766555 22222 234445566678899999999987755 55555442 1 22 3
Q ss_pred CCceEEEEecCCCc
Q 046394 190 GHAKTLDFSRKDSG 203 (378)
Q Consensus 190 ~~i~~~~~sp~g~~ 203 (378)
.|+.--.|+..+..
T Consensus 630 ~P~~Lr~f~sk~~t 643 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRT 643 (1096)
T ss_pred CCcEEEEEeeCCce
Confidence 45555566655554
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.95 E-value=7.4 Score=36.30 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=17.8
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEE
Q 046394 152 PVSALAFHPNGHLMATSGKDCKIKIW 177 (378)
Q Consensus 152 ~v~~~~~sp~g~~l~t~~~d~~i~iw 177 (378)
.|..+..+|.|..++.+|.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 45667777888777777777754443
No 430
>PHA02790 Kelch-like protein; Provisional
Probab=89.61 E-value=17 Score=34.39 Aligned_cols=60 Identities=3% Similarity=-0.112 Sum_probs=31.1
Q ss_pred CCCCEEEEEeCC--CcEEEEeCCCCeEEeeccCCC---e-eEEEE---EEEEEeCC---CeEEEEEcCCCcE
Q 046394 55 SSGRYMAAAGCK--GYPYFYNRDGTELHCSKEHGE---V-LKLQF---LLASINKL---GQLRYQNVTMGEI 114 (378)
Q Consensus 55 p~g~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~---~-~~l~~---~l~s~~~d---~~i~iwd~~~~~~ 114 (378)
-+|...++||.+ ..+..||.....-..+..-.. . ....+ +.+.||.+ ..+..||..+.+-
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 456666777753 357788854333222221111 1 22233 56666654 3467888776543
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.48 E-value=8.5 Score=31.60 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC
Q 046394 150 QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 150 ~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~ 181 (378)
+.++.+++..| .|++++.+ ++.+.||.+..
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~ 164 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY 164 (215)
T ss_pred CCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence 45677888888 67655433 56788887754
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.94 E-value=19 Score=35.06 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=38.0
Q ss_pred eCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEe--cCCCEEEEEECCCeEEE
Q 046394 99 NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFH--PNGHLMATSGKDCKIKI 176 (378)
Q Consensus 99 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~s--p~g~~l~t~~~d~~i~i 176 (378)
+....+.|||...+.....-. ....+.|.++.|. |+|+.+++.|..+.|.+
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~---------------------------f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEES---------------------------FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeee---------------------------ecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 344579999998776332221 1235667777775 58999999999999999
Q ss_pred EEc
Q 046394 177 WDL 179 (378)
Q Consensus 177 wd~ 179 (378)
|--
T Consensus 101 ~~Q 103 (631)
T PF12234_consen 101 YTQ 103 (631)
T ss_pred EEc
Confidence 854
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.74 E-value=19 Score=33.12 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=48.6
Q ss_pred cceeeeeecccceeeEEeecCCCC--ceEEEEcC--CCCEEEEEeC-CCcEEEEeC--CC----CeEEeeccC-------
Q 046394 24 EAIAREVDILSSRNQYDIMLPELG--PYTLDFTS--SGRYMAAAGC-KGYPYFYNR--DG----TELHCSKEH------- 85 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~--v~~~~~sp--~g~~l~~~~~-dg~i~iwd~--~~----~~~~~~~~~------- 85 (378)
...+++||+.+.+.+.++.....+ +..+.|.. +..+-++|+. .++|..|-. ++ +.+..+...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 478999999999999999876543 56777754 4555444433 445555542 22 112222111
Q ss_pred ----------CCe-eEEEE------EEEEEeCCCeEEEEEcCCC
Q 046394 86 ----------GEV-LKLQF------LLASINKLGQLRYQNVTMG 112 (378)
Q Consensus 86 ----------~~~-~~l~~------~l~s~~~d~~i~iwd~~~~ 112 (378)
... +.+.. +.+++-.+|.|+.||+...
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 122 45444 6677778999999999863
No 434
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.64 E-value=1.9 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=18.8
Q ss_pred CCCceEEEEcCCCCEEEEEeC-C--CcEEEE
Q 046394 45 ELGPYTLDFTSSGRYMAAAGC-K--GYPYFY 72 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~-d--g~i~iw 72 (378)
...-....|||||++|+.++. + |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345668899999998776654 4 555555
No 435
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.37 E-value=20 Score=36.03 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=43.1
Q ss_pred CCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe---------eEEE------------------E---EEEEEeCCCeEE
Q 046394 57 GRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV---------LKLQ------------------F---LLASINKLGQLR 105 (378)
Q Consensus 57 g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~---------~~l~------------------~---~l~s~~~d~~i~ 105 (378)
+..|++++.++.|+-.| .+|+.+..+...... ..+. . .++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45777788888888888 677777665432211 0011 1 466677889999
Q ss_pred EEEcCCCcEEEEEe
Q 046394 106 YQNVTMGEIVGNFW 119 (378)
Q Consensus 106 iwd~~~~~~~~~~~ 119 (378)
-.|..+|+.+..|.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999999887774
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.85 E-value=3.5 Score=34.28 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=24.9
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394 158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQ 186 (378)
Q Consensus 158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~ 186 (378)
+..++++|++.+.+|.+++||+.+++++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 45578899999999999999999987644
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=14 Score=30.14 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=49.2
Q ss_pred cceeeeeecccceeeEEeecCCCCce--EEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCeeEEEE---EEEE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPY--TLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEVLKLQF---LLAS 97 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~--~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~l~~---~l~s 97 (378)
...|++||+.+++.+++-......++ .+.-.-|.-+.++ -.+|.-.++|.+ -+++..+.-......++. .+..
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT-w~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~Lim 145 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT-WKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIM 145 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE-eccceeEEEChHHhhhhcccccCCcceeeecCCcceEe
Confidence 36789999999999888766533333 2222222223333 357888888843 333444433333355555 4444
Q ss_pred EeCCCeEEEEEcCCCc
Q 046394 98 INKLGQLRYQNVTMGE 113 (378)
Q Consensus 98 ~~~d~~i~iwd~~~~~ 113 (378)
++...++..-|..+..
T Consensus 146 sdGsatL~frdP~tfa 161 (262)
T COG3823 146 SDGSATLQFRDPKTFA 161 (262)
T ss_pred eCCceEEEecCHHHhh
Confidence 4444556666655443
No 438
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.32 E-value=23 Score=32.23 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=69.8
Q ss_pred ceeeEEEeccceeeeeecccceeeEEeecCC--CCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC--Ce-
Q 046394 15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPE--LGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG--EV- 88 (378)
Q Consensus 15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~--~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~- 88 (378)
.++++....++.+..+|..++..++....-. ..+.+-.+..+|+ |++++.+|.++.+|. +|..+....... ..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 5556666677888889999988766544331 2222223333675 778888999999996 898888877666 11
Q ss_pred eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394 89 LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWT 120 (378)
Q Consensus 89 ~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~ 120 (378)
....+ .+..++.++.+...|..+|........
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 12222 444444789999999999988776543
No 439
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=87.18 E-value=20 Score=31.50 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe------eEEEE-----EEEEEeCCCeEEEEEcCCCcEE
Q 046394 48 PYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV------LKLQF-----LLASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 48 v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~------~~l~~-----~l~s~~~d~~i~iwd~~~~~~~ 115 (378)
+++|...++|.+|+++-.-..|.+.| .+|..+..+.+.... ...+| ++-.+..++.|.++|-.....
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~- 224 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF- 224 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-
Confidence 66888888999999998888999999 788888888776221 11333 444556788999998632111
Q ss_pred EEEecCCCCeeEEEEcCCCCEEE--EEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394 116 GNFWTGLGRTDVIRVNPFNGVVS--LGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178 (378)
Q Consensus 116 ~~~~~~~~~v~~~~~s~~~~~l~--~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd 178 (378)
.......-.-+.+.+....+. ....+.........--++..-|+|+.|++=+..+.+.=++
T Consensus 225 --~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~ 287 (299)
T PF14269_consen 225 --NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFT 287 (299)
T ss_pred --CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEEC
Confidence 111112222333334332211 1111000001111112355678888888877777665554
No 440
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.96 E-value=10 Score=32.66 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=13.6
Q ss_pred CCeeEEEEcCCCCEEEEEcCCCe
Q 046394 123 GRTDVIRVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 123 ~~v~~~~~s~~~~~l~~~~~d~~ 145 (378)
..+++++|+|+.+.|++..+...
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~ 108 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPA 108 (316)
T ss_pred ccccceeeCCCcceEEEecCCCc
Confidence 44666777776666555544443
No 441
>PHA02713 hypothetical protein; Provisional
Probab=86.86 E-value=25 Score=34.11 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=30.9
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEeeccCCC---e-eEEEE---EEEEEeCCC-----eEEEEEcCCCc
Q 046394 56 SGRYMAAAGCK------GYPYFYNRDGTELHCSKEHGE---V-LKLQF---LLASINKLG-----QLRYQNVTMGE 113 (378)
Q Consensus 56 ~g~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~---~-~~l~~---~l~s~~~d~-----~i~iwd~~~~~ 113 (378)
++..+++||.+ ..+..||.....-..+..-.. . ....+ +.+.||.++ ++..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 56666777753 247788854443222221111 1 22223 666677653 47889987654
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.83 E-value=25 Score=32.30 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCEEEEEeCCCcEEE-EeCCCC--eEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcE-----E
Q 046394 48 PYTLDFTSSGRYMAAAGCKGYPYF-YNRDGT--ELHCSKEHGEVLKLQF----LLASINKLGQLRYQNVTMGEI-----V 115 (378)
Q Consensus 48 v~~~~~sp~g~~l~~~~~dg~i~i-wd~~~~--~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~-----~ 115 (378)
...+..+++|.+++++. .|.+.. ||.-+. ...........+.+.| -++.++.+|.+. +....++. .
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccce
Confidence 34456677877776664 344443 442221 2222222333366766 344444666653 33344432 2
Q ss_pred EEEec--CCCCeeEEEEcCCCCEEEEEcCCCe-----------e----eecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394 116 GNFWT--GLGRTDVIRVNPFNGVVSLGHSGGT-----------M----LCHQGPVSALAFHPNGHLMATSGKDCKIKIW 177 (378)
Q Consensus 116 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~-----------~----~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw 177 (378)
..... ....+..+.|.+++..+++|..... . ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 22221 1234788889988887777655333 1 1113457788887766555544 56665544
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.02 E-value=0.73 Score=45.32 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=43.7
Q ss_pred CceEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC
Q 046394 47 GPYTLDFTS---SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG 112 (378)
Q Consensus 47 ~v~~~~~sp---~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~ 112 (378)
.+.-+.|+| +..++..+-.+|.|++.+.+......+++|... +.++| .++..+-||++..|-+..|
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 345566655 556777777788888877555444566777754 77766 5556666777777766554
No 444
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.00 E-value=50 Score=34.90 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=13.4
Q ss_pred EEEEEeCCCeEEEEEcCCCc
Q 046394 94 LLASINKLGQLRYQNVTMGE 113 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~ 113 (378)
++|..--||++.+=|..+.+
T Consensus 411 y~AvsPvdgtlyvSdp~s~q 430 (1899)
T KOG4659|consen 411 YIAVSPVDGTLYVSDPLSKQ 430 (1899)
T ss_pred EEEecCcCceEEecCCCcce
Confidence 67777778887776655444
No 445
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.79 E-value=20 Score=35.82 Aligned_cols=86 Identities=15% Similarity=0.263 Sum_probs=46.5
Q ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEEcCC-ceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeeccCCccee
Q 046394 151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIG 226 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~ 226 (378)
..|..|.++|+|.+++..|..| |.|-.+.. .-.-..+ ...+.|-++.=+. .++ ...+...|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-----------~~~--~~~~~~~i~ 150 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-----------RFF--TSNSSLEIK 150 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech-----------hhc--cCCCCceEE
Confidence 4688899999999999998766 44444432 1101111 1112222211111 111 111445688
Q ss_pred eeEEcCCC---CeEEEecCCCeEEEEE
Q 046394 227 KVSFRPYE---DVLGIGHSMGVSGILI 250 (378)
Q Consensus 227 ~~~~sp~g---~~l~~~~~~g~~~~~~ 250 (378)
.+.|+|.+ ..|++=.+|+.+++|.
T Consensus 151 qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 151 QVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred EEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 89999874 5666666666555554
No 446
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.56 E-value=3.4 Score=37.70 Aligned_cols=142 Identities=16% Similarity=0.124 Sum_probs=79.4
Q ss_pred eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe--e-ccCCC-----ee-EE-----EEEEEEEeCCCeEEE
Q 046394 41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC--S-KEHGE-----VL-KL-----QFLLASINKLGQLRY 106 (378)
Q Consensus 41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~-~~~~~-----~~-~l-----~~~l~s~~~d~~i~i 106 (378)
+......|..+-..|||+.+.+-+. ..+.|++...+.+.. + ....+ ++ .+ .|-+..++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 5555567888999999998776654 578888854443322 1 11111 11 11 115667788888876
Q ss_pred E-EcCC-CcE----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCee-------------eecCCCEEEEEEecCCCEEEE
Q 046394 107 Q-NVTM-GEI----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTM-------------LCHQGPVSALAFHPNGHLMAT 167 (378)
Q Consensus 107 w-d~~~-~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~-------------~~h~~~v~~~~~sp~g~~l~t 167 (378)
| |++. +++ ++.+......+..+.-....+-+++-+.+|.+ ..--..+..+++||.+.++++
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence 6 5543 221 22333222333333322233445555555551 111234567889999988877
Q ss_pred EECCCeEEEEEcCCcee
Q 046394 168 SGKDCKIKIWDLRKYEV 184 (378)
Q Consensus 168 ~~~d~~i~iwd~~~~~~ 184 (378)
-. .|.|+++.+.+..+
T Consensus 375 e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 375 ED-QGKIRLAQLENRNP 390 (733)
T ss_pred ec-CCceEEEEecCCCC
Confidence 54 45688888876443
No 447
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.54 E-value=2.1 Score=41.34 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=29.0
Q ss_pred CCEEEEEEec----CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 151 GPVSALAFHP----NGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 151 ~~v~~~~~sp----~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
+.+.++++++ +..++++.+.|++||+||+.++.++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455666666 6789999999999999999999997665
No 448
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.31 E-value=29 Score=31.54 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEeec
Q 046394 55 SSGRYMAAAGCKGYPYFYNRDGTELHCSK 83 (378)
Q Consensus 55 p~g~~l~~~~~dg~i~iwd~~~~~~~~~~ 83 (378)
|...+|+....++-+.+||++|+.+..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~ 94 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP 94 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeec
Confidence 34467887788889999999999998875
No 449
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.74 E-value=13 Score=38.71 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDG 76 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 76 (378)
....++|+|.-.++|.|...|.|.+|...+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccc
Confidence 456889999999999999999999998543
No 450
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.97 E-value=23 Score=30.74 Aligned_cols=61 Identities=8% Similarity=-0.143 Sum_probs=41.8
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEeecc
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG------CKGYPYFYNRDGTELHCSKE 84 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 84 (378)
-.-+++||..+.+-..--.+=.+.|+.|.|..+...++.|. ....+..||........+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 34578899877776544444456799999986666666663 34568889977766656655
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.75 E-value=20 Score=28.56 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=24.3
Q ss_pred cceeeeEEcCCC------CeEEEecCCCeEEEEEcCCC
Q 046394 223 YQIGKVSFRPYE------DVLGIGHSMGVSGILIPGSG 254 (378)
Q Consensus 223 ~~v~~~~~sp~g------~~l~~~~~~g~~~~~~~~s~ 254 (378)
..|.+++|||-| -+||+-+.+|.+.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 368899999965 36788888888777776543
No 452
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.63 E-value=5.3 Score=22.41 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=11.1
Q ss_pred CCEEEEEEecCCCEEEEEE
Q 046394 151 GPVSALAFHPNGHLMATSG 169 (378)
Q Consensus 151 ~~v~~~~~sp~g~~l~t~~ 169 (378)
+.-....|||||++|+-++
T Consensus 9 ~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEE
T ss_pred ccccCEEEecCCCEEEEEe
Confidence 3445667777777765444
No 453
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.31 E-value=11 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=21.3
Q ss_pred CEEEEEEecCC------CEEEEEECCCeEEEEEcCC
Q 046394 152 PVSALAFHPNG------HLMATSGKDCKIKIWDLRK 181 (378)
Q Consensus 152 ~v~~~~~sp~g------~~l~t~~~d~~i~iwd~~~ 181 (378)
.|.+++|||.| -+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 55666666632 2578888999999997653
No 454
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.27 E-value=42 Score=34.41 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred eeeeeecccceeeEEeecCCC----CceEEEEcCCCC--EEEEEeC-----------CCcEEEEe--CCCCeEEeeccCC
Q 046394 26 IAREVDILSSRNQYDIMLPEL----GPYTLDFTSSGR--YMAAAGC-----------KGYPYFYN--RDGTELHCSKEHG 86 (378)
Q Consensus 26 ~i~~~d~~~~~~~~~l~~~~~----~v~~~~~sp~g~--~l~~~~~-----------dg~i~iwd--~~~~~~~~~~~~~ 86 (378)
.+++.|..++..+.-+....+ .+..+.|+.... ++++|+. +|.++.|+ ..|..+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 477788877776655554332 455667765433 3444432 34567777 3455433332221
Q ss_pred --C-eeEEE-E-EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEe
Q 046394 87 --E-VLKLQ-F-LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFH 159 (378)
Q Consensus 87 --~-~~~l~-~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~s 159 (378)
+ +.+++ | -.+-++....+++||+...+.++..... +..|+.+++ .+..+++|. -...|.-+.|.
T Consensus 934 ~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD-------~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGD-------IQESVHFVRYR 1004 (1205)
T ss_pred CCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEee-------ccceEEEEEEe
Confidence 1 23332 3 2233344578999999876655543322 233333333 234444442 23456666666
Q ss_pred cCCCEEEEEECCC
Q 046394 160 PNGHLMATSGKDC 172 (378)
Q Consensus 160 p~g~~l~t~~~d~ 172 (378)
|+++.|..-..|.
T Consensus 1005 ~~~n~l~~fadD~ 1017 (1205)
T KOG1898|consen 1005 REDNQLIVFADDP 1017 (1205)
T ss_pred cCCCeEEEEeCCC
Confidence 7666665555443
No 455
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.70 E-value=70 Score=31.97 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=33.6
Q ss_pred EEEeccceeeeeeccc-ceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Q 046394 19 WRIKQEAIAREVDILS-SRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYN 73 (378)
Q Consensus 19 ~~~~~~~~i~~~d~~~-~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd 73 (378)
+.+.+..+|.+..-.+ .+....+-+ -..+|...+||.|...++....+..|.+++
T Consensus 84 f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 84 FLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred EEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 3444555555533222 222233322 346889999999998666666677888887
No 456
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=79.36 E-value=83 Score=33.02 Aligned_cols=136 Identities=9% Similarity=0.033 Sum_probs=70.6
Q ss_pred EEcCCCCEEEEEeCCCcEE----------EEeCCCCeEEeeccCCC--eeEEEE---EEEEEeCCCeEEEEEcCCCcEEE
Q 046394 52 DFTSSGRYMAAAGCKGYPY----------FYNRDGTELHCSKEHGE--VLKLQF---LLASINKLGQLRYQNVTMGEIVG 116 (378)
Q Consensus 52 ~~sp~g~~l~~~~~dg~i~----------iwd~~~~~~~~~~~~~~--~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~ 116 (378)
.|..+++.|++|.--+.-+ ++|-+-..++.+.-..+ +..... +++.-+..|.|.+++++......
T Consensus 581 ~f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd~~~~vv~~sv~dpyv~v~~~~g~i~~~~l~~~s~rl 660 (1366)
T KOG1896|consen 581 GFTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFDSGAIVVQTSVADPYVAVRSSEGRITLYDLEEKSHRL 660 (1366)
T ss_pred eeEeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccccCCcEEEEeccCceEEEEEcCCceEEEEeccccchh
Confidence 4666777777776655333 34322233333322221 122222 67777778889999987653322
Q ss_pred EEec-CCCCeeEEEEcCCCC-EEEEEc-CCCe---eeecCC------CEEEEEE------ecCC--CEEEEEECCCeEEE
Q 046394 117 NFWT-GLGRTDVIRVNPFNG-VVSLGH-SGGT---MLCHQG------PVSALAF------HPNG--HLMATSGKDCKIKI 176 (378)
Q Consensus 117 ~~~~-~~~~v~~~~~s~~~~-~l~~~~-~d~~---~~~h~~------~v~~~~~------sp~g--~~l~t~~~d~~i~i 176 (378)
.+.. +...+.++...++-+ .+++-+ ..+. ..++.. ... ... .|+- .+++.+..+|++.+
T Consensus 661 ~~~~~~s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~~~~~~~~~~-~kv~~~egg~~~~~~~~~~~~~e~g~lei 739 (1366)
T KOG1896|consen 661 ALHDPMSFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSSEAEGLQSLP-CKVDDEEGGSPEQEPYWCVFVTESGTLEI 739 (1366)
T ss_pred hccCcccceeEEEechhhhccceEEEeeecccCcccccccccccccccCC-ccccCCCCCCcccCceEEEEEcCCCceEE
Confidence 2222 244566666666543 333322 1111 112221 111 111 1111 56777888999999
Q ss_pred EEcCCceeeeee
Q 046394 177 WDLRKYEVLQTL 188 (378)
Q Consensus 177 wd~~~~~~~~~~ 188 (378)
|++....++..+
T Consensus 740 y~~pd~~lVf~v 751 (1366)
T KOG1896|consen 740 YALPDFDLVFEV 751 (1366)
T ss_pred EccCCcceEEEe
Confidence 999888777665
No 457
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.18 E-value=56 Score=32.30 Aligned_cols=90 Identities=13% Similarity=0.023 Sum_probs=53.1
Q ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCeeEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394 45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEVLKLQF---LLASINKLGQLRYQNVTMGEIVGNFWT 120 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~ 120 (378)
...++++.-+|.|..++.++.||+|++|+.. ...............+.| -++++..|..+.-|.- +|-..+.|..
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~-dgvvqqqfdy 92 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKE-DGVVQQQFDY 92 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeec-cCcchhhccc
Confidence 3456788888999999999999999999942 222111111111244455 5777777877777763 4443344432
Q ss_pred C---CCCeeEEEEcCCCC
Q 046394 121 G---LGRTDVIRVNPFNG 135 (378)
Q Consensus 121 ~---~~~v~~~~~s~~~~ 135 (378)
. ....+++.+.|..+
T Consensus 93 ndqsekefss~~cdptaq 110 (1636)
T KOG3616|consen 93 NDQSEKEFSSILCDPTAQ 110 (1636)
T ss_pred cchhhhhccceecCchhh
Confidence 2 12344555555443
No 458
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.16 E-value=38 Score=28.67 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=24.1
Q ss_pred EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394 155 ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188 (378)
Q Consensus 155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~ 188 (378)
-+...|+|++|+.+..+. .|||..+.+.++.+
T Consensus 174 ~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 174 FVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred eEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 356689999998888765 56788887766666
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.92 E-value=31 Score=31.79 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=70.6
Q ss_pred EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--eeecCCC-----------------EE-EEEEecCCCEEEEEECCCe
Q 046394 114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--MLCHQGP-----------------VS-ALAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--~~~h~~~-----------------v~-~~~~sp~g~~l~t~~~d~~ 173 (378)
.+..+......+..+-..|||+.+++-+.... ..-|+.+ |+ .+..-..|..++.++.||.
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 34444445577888899999998777655333 1111110 11 1111223556788888998
Q ss_pred EEEE-EcCC-cee----eeee---cCCce----------EEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCC
Q 046394 174 IKIW-DLRK-YEV----LQTL---PGHAK----------TLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE 234 (378)
Q Consensus 174 i~iw-d~~~-~~~----~~~~---~~~i~----------~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 234 (378)
|.-| |++. +.+ ++.+ +.++. -..++++|....+......++..... ...+.-+++||.+
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~ 369 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCccc
Confidence 8776 5553 222 1222 12221 23556666654444333333222221 2346678999999
Q ss_pred CeEEEecCCCeE
Q 046394 235 DVLGIGHSMGVS 246 (378)
Q Consensus 235 ~~l~~~~~~g~~ 246 (378)
.+|++-...+..
T Consensus 370 ~~Ll~e~~gki~ 381 (733)
T COG4590 370 AYLLSEDQGKIR 381 (733)
T ss_pred chheeecCCceE
Confidence 998887766643
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.59 E-value=45 Score=29.17 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=44.5
Q ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCe---EEeecc------CCCeeEEEE-----------------EE
Q 046394 47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRD-----GTE---LHCSKE------HGEVLKLQF-----------------LL 95 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-----~~~---~~~~~~------~~~~~~l~~-----------------~l 95 (378)
..+.|+++|.+.+-++....+...+||.. +.. +..+.. ...++.+.| .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999998877777778899999954 222 233332 112366666 47
Q ss_pred EEEeCCCeEEEEEcC
Q 046394 96 ASINKLGQLRYQNVT 110 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~ 110 (378)
+.++.||+|.-|...
T Consensus 104 if~tEdGTisaW~p~ 118 (336)
T TIGR03118 104 LFVTEDGTLSGWAPA 118 (336)
T ss_pred EEEeCCceEEeecCc
Confidence 888899999999853
No 461
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=78.54 E-value=7.4 Score=20.11 Aligned_cols=25 Identities=8% Similarity=0.422 Sum_probs=16.9
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEE
Q 046394 153 VSALAFHPNGHLMATSGKDCKIKIW 177 (378)
Q Consensus 153 v~~~~~sp~g~~l~t~~~d~~i~iw 177 (378)
...++++++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776666666654
No 462
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=77.89 E-value=14 Score=22.97 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=9.9
Q ss_pred eeEEEEcCCCCEEEEEcC
Q 046394 125 TDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 125 v~~~~~s~~~~~l~~~~~ 142 (378)
+.+++..|||+++++|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 345555566666655543
No 463
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.65 E-value=7.1 Score=20.74 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=9.1
Q ss_pred EEEeCCCeEEEEEcCCCcEE
Q 046394 96 ASINKLGQLRYQNVTMGEIV 115 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~~~~~ 115 (378)
+.++.++.+..+|..+|+.+
T Consensus 10 ~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 10 YVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred EEEcCCCEEEEEEcccCcEE
Confidence 33444444555554444443
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.61 E-value=21 Score=37.27 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=30.0
Q ss_pred CCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC-CCcccccc
Q 046394 221 KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS-GEPNFDSW 261 (378)
Q Consensus 221 ~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s-~d~~i~~w 261 (378)
+..+|..+.....-.+|.+=+..|.+..|..+. +-+..+..
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~ 282 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFV 282 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeee
Confidence 567899999988877888888888888776555 44444443
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.43 E-value=0.61 Score=42.63 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=70.3
Q ss_pred cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeEEeeccCCC-e-eEEEE-----EE
Q 046394 24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMA-AAGCKGYPYFYNRDGTELHCSKEHGE-V-LKLQF-----LL 95 (378)
Q Consensus 24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-~-~~l~~-----~l 95 (378)
+.++..||- .++....+.. ++....|+|.-+|..++ .+-..+.+.+||.+.+....+..... . .-+.| .+
T Consensus 55 ~tiv~~YD~-agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el 132 (615)
T KOG2247|consen 55 NTIVIYYDK-AGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPEL 132 (615)
T ss_pred hhHHHhhhh-hcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccc
Confidence 334444542 2333333332 35566888888887544 45568899999965544333322211 1 22334 56
Q ss_pred EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEE
Q 046394 96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLG 140 (378)
Q Consensus 96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 140 (378)
+.+...|.+.|++..+...+-....|...+.++++.+.+..+..+
T Consensus 133 ~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 133 VIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred cccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 666778899999987766555554477888899998887665543
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.41 E-value=26 Score=33.84 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=24.8
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecC
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTG 121 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 121 (378)
++++.+.|+++++||+.+++++.+....
T Consensus 232 ~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 232 FLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 8889999999999999999998877543
No 467
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.31 E-value=7.6 Score=20.05 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=19.6
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEe
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYN 73 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd 73 (378)
..|.+++.++ .+++++.+.+.+++|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 3567777764 4888888888999874
No 468
>PRK13684 Ycf48-like protein; Provisional
Probab=76.86 E-value=55 Score=29.29 Aligned_cols=91 Identities=14% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCCEEEEEEecCCCEEEEEECCCeEE-EEEcCCceeeeee----cCCceEEEEecCCCccccCC---------CCCceEE
Q 046394 150 QGPVSALAFHPNGHLMATSGKDCKIK-IWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGS---------HNYNRYM 215 (378)
Q Consensus 150 ~~~v~~~~~sp~g~~l~t~~~d~~i~-iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~---------~~~~~~~ 215 (378)
.+.+.++.+.|++.+++++. .|.+. .+|- .++....+ ...++++.+.|++...+... ..+....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 45688999999886665554 55443 2221 12222222 35678888888876532221 1111111
Q ss_pred Eeecc---CCcceeeeEEcCCCCeEEEecC
Q 046394 216 GYSMV---KGYQIGKVSFRPYEDVLGIGHS 242 (378)
Q Consensus 216 ~~~~~---~~~~v~~~~~sp~g~~l~~~~~ 242 (378)
....+ ....+.++.|.|++..+++|..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCC
Confidence 10000 1234778899998877666654
No 469
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=76.71 E-value=1.1e+02 Score=32.63 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=14.4
Q ss_pred cCCCCceEEEEcCCCCEEEE
Q 046394 43 LPELGPYTLDFTSSGRYMAA 62 (378)
Q Consensus 43 ~~~~~v~~~~~sp~g~~l~~ 62 (378)
.|-..+.++|.+|||..++.
T Consensus 659 A~lnsp~alaVsPdg~v~IA 678 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIA 678 (1899)
T ss_pred cccCCcceEEECCCCcEEEe
Confidence 34456888999999876554
No 470
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=75.54 E-value=12 Score=20.99 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.6
Q ss_pred EEEEeCCCeEEEEEcCCCcEEEEEecC
Q 046394 95 LASINKLGQLRYQNVTMGEIVGNFWTG 121 (378)
Q Consensus 95 l~s~~~d~~i~iwd~~~~~~~~~~~~~ 121 (378)
++.++.+|.|.-.|..+|+.+..+...
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 456688999999999999999888753
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.14 E-value=13 Score=30.62 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=43.9
Q ss_pred CCCeeecCCceeeEEEeccceeeeeecc--cceeeEEeecCCCCceEEEEcCCCCEEEEEeC
Q 046394 6 EGGYLEAEGVEKTWRIKQEAIAREVDIL--SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC 65 (378)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~ 65 (378)
++..+...+.|..+.......|.+|++. ..+....+..- +.|..+.++..|+||+|--.
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 5556666566777776778899999988 33445555543 78999999999999998644
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=74.75 E-value=1.1e+02 Score=31.69 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=51.4
Q ss_pred eEEEEEcCCCcEEEEEecCCC----CeeEEEEcCCCC--EEEEEcCCCe------------------------eeecCCC
Q 046394 103 QLRYQNVTMGEIVGNFWTGLG----RTDVIRVNPFNG--VVSLGHSGGT------------------------MLCHQGP 152 (378)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~--~l~~~~~d~~------------------------~~~h~~~ 152 (378)
.|++.|..++..+..+....+ .+..+.|+.... +++++..... -.-|...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 488888888877666654332 355566665443 4444433222 0112222
Q ss_pred EE--EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEE
Q 046394 153 VS--ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDF 197 (378)
Q Consensus 153 v~--~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~ 197 (378)
+. -.++.|-..++++ +....+++||+...++++.. +..|+.+.+
T Consensus 934 ~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt 984 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT 984 (1205)
T ss_pred CCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee
Confidence 21 2355664444444 45678999999887776554 334555544
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.40 E-value=13 Score=20.93 Aligned_cols=20 Identities=0% Similarity=0.049 Sum_probs=9.4
Q ss_pred CCCeEEEEEcCCCcEEEEEe
Q 046394 100 KLGQLRYQNVTMGEIVGNFW 119 (378)
Q Consensus 100 ~d~~i~iwd~~~~~~~~~~~ 119 (378)
.+++|.++|..+++.+..+.
T Consensus 12 ~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 12 GSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCEEEEEECCCCeEEEEEE
Confidence 34445555554444444443
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=73.97 E-value=36 Score=25.71 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=38.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC---------CeEEeeccCCCeeEEEE----------EEEEEeCCCeEEEEEcC
Q 046394 50 TLDFTSSGRYMAAAGCKGYPYFYNRDG---------TELHCSKEHGEVLKLQF----------LLASINKLGQLRYQNVT 110 (378)
Q Consensus 50 ~~~~sp~g~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~l~~----------~l~s~~~d~~i~iwd~~ 110 (378)
.-.|......|+.++.-|.|.|++... ..+..|.-...+++++- .|+.|+ ...|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345666667888888899999998432 23444544445544433 344443 3567788876
Q ss_pred CCc
Q 046394 111 MGE 113 (378)
Q Consensus 111 ~~~ 113 (378)
...
T Consensus 82 ~N~ 84 (136)
T PF14781_consen 82 NNS 84 (136)
T ss_pred cCc
Confidence 544
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=71.90 E-value=54 Score=32.41 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=35.9
Q ss_pred CceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046394 14 GVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG 76 (378)
Q Consensus 14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~ 76 (378)
+...++...+|+.+.+++............ ..+...+.|...| |++..+|..+.-|..+|
T Consensus 25 ~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 25 GGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred CCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEeccchhheeeccC
Confidence 455677788899999988866554222111 1234455665444 55555666777776554
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=71.04 E-value=66 Score=32.13 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=49.8
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEee----ccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcEEE
Q 046394 50 TLDFTSSGRYMAAAGCKG-----YPYFYNRDGTELHCS----KEHGEVLKLQF----LLASINKLGQLRYQNVTMGEIVG 116 (378)
Q Consensus 50 ~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~~~~~~----~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~ 116 (378)
-+.|-|.|..+++-+.|| .|..+..+|-....+ ........++| .+......+.|.+|-..+-....
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYL 330 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYL 330 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEE
Confidence 489999999999877555 466666555332222 11112255666 12222345679999876655444
Q ss_pred EEecCCCCeeEEEEcCCC
Q 046394 117 NFWTGLGRTDVIRVNPFN 134 (378)
Q Consensus 117 ~~~~~~~~v~~~~~s~~~ 134 (378)
.....-..+.-+.|+|..
T Consensus 331 K~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 331 KVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEeecCCCcceeeecccc
Confidence 433344556677888854
No 477
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.15 E-value=17 Score=20.45 Aligned_cols=17 Identities=12% Similarity=-0.078 Sum_probs=9.5
Q ss_pred EEEEEeCCCeEEEEEcC
Q 046394 94 LLASINKLGQLRYQNVT 110 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~ 110 (378)
.++.++.||.|..+|..
T Consensus 23 ~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 23 RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EEEEE-TTSEEEEEETT
T ss_pred EEEEEcCCCEEEEEeCC
Confidence 55555566666666653
No 478
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=69.66 E-value=76 Score=27.67 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=18.3
Q ss_pred eEEEE---EEEEEeCCCeEEEEEcCCCcE
Q 046394 89 LKLQF---LLASINKLGQLRYQNVTMGEI 114 (378)
Q Consensus 89 ~~l~~---~l~s~~~d~~i~iwd~~~~~~ 114 (378)
..+.| +...+..+.-++|.|+.+...
T Consensus 90 ~Dv~vse~yvyvad~ssGL~IvDIS~P~s 118 (370)
T COG5276 90 ADVRVSEEYVYVADWSSGLRIVDISTPDS 118 (370)
T ss_pred heeEecccEEEEEcCCCceEEEeccCCCC
Confidence 55556 566666777799999987653
No 479
>PHA03098 kelch-like protein; Provisional
Probab=68.47 E-value=58 Score=31.33 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=13.6
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCc
Q 046394 161 NGHLMATSGKD-----CKIKIWDLRKY 182 (378)
Q Consensus 161 ~g~~l~t~~~d-----~~i~iwd~~~~ 182 (378)
++..++.||.+ +.|.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 55566666644 36777877653
No 480
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=68.24 E-value=22 Score=24.46 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 046394 46 LGPYTLDFTSSGRYMAAAGC-KGYPYFYNR 74 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~ 74 (378)
...+.|.++|++++|++++. .+.|++|..
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 56779999999998887766 678888873
No 481
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=68.11 E-value=70 Score=31.80 Aligned_cols=106 Identities=8% Similarity=0.110 Sum_probs=65.0
Q ss_pred CCCCCCeeecCC---ceeeEEEeccceeeeeecccc--------------------eeeEEeecCCCCceEEEEc--CCC
Q 046394 3 MPSEGGYLEAEG---VEKTWRIKQEAIAREVDILSS--------------------RNQYDIMLPELGPYTLDFT--SSG 57 (378)
Q Consensus 3 ~~~~~~~l~~~~---~~~~~~~~~~~~i~~~d~~~~--------------------~~~~~l~~~~~~v~~~~~s--p~g 57 (378)
.|+.-++|..+. .+-.+...++|.|.+|-+.+- ++-+.+..+ ..+++++++ ...
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~-~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG-ASAWGLDIHDYKKS 177 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC-CceeEEEEEecCcc
Confidence 345455666555 333444456788888865221 123444443 578899998 778
Q ss_pred CEEEEEeCCCcEEEEeCCC--CeEE---eeccCCCeeEEEE-----------EEEEEeCCCeEEEEEc
Q 046394 58 RYMAAAGCKGYPYFYNRDG--TELH---CSKEHGEVLKLQF-----------LLASINKLGQLRYQNV 109 (378)
Q Consensus 58 ~~l~~~~~dg~i~iwd~~~--~~~~---~~~~~~~~~~l~~-----------~l~s~~~d~~i~iwd~ 109 (378)
++||+++....|.||-... .... .......+-+++| .+++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8999999888898887221 1111 1111123356666 5667788899988887
No 482
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=67.85 E-value=44 Score=32.52 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=40.2
Q ss_pred CEEEEEEecCCCEEEEEE-----CCCeEEEEEcCCceeeeee-cCCceEEEEecCCCcccc
Q 046394 152 PVSALAFHPNGHLMATSG-----KDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFS 206 (378)
Q Consensus 152 ~v~~~~~sp~g~~l~t~~-----~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~ 206 (378)
.+-.++.|||++++|-+- ..-++++-|+.++..+-.. .....+++|.+|+...++
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfY 190 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFY 190 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEE
Confidence 345677888888876432 2337999999998876555 666788999999987554
No 483
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=67.81 E-value=1.5e+02 Score=30.47 Aligned_cols=135 Identities=11% Similarity=-0.041 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC---CeeEEEE-----------EEEEEeCCCeEEEEE-cC
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG---EVLKLQF-----------LLASINKLGQLRYQN-VT 110 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~l~~-----------~l~s~~~d~~i~iwd-~~ 110 (378)
+.++....+.+...++.++.++.+...+.....+.....+. .+.|+.+ +++.|..+..+.+.- +.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 45555555556667777777766666664322233222222 2355655 667777666554433 23
Q ss_pred CCcEEEEEe----cCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEE
Q 046394 111 MGEIVGNFW----TGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATS 168 (378)
Q Consensus 111 ~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~ 168 (378)
+...+.... .-+..+...++-.|+.+|.++..||. ..-...|+.--.|+..+..-+.+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa 647 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA 647 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence 333322221 12234555566677889999999998 01112345555666655544444
Q ss_pred ECCCeEEEEEcC
Q 046394 169 GKDCKIKIWDLR 180 (378)
Q Consensus 169 ~~d~~i~iwd~~ 180 (378)
..|.-..+|..+
T Consensus 648 ~sdrP~viY~~n 659 (1096)
T KOG1897|consen 648 LSDRPTVIYSSN 659 (1096)
T ss_pred eCCCCEEEEecC
Confidence 456655556443
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=67.07 E-value=21 Score=24.78 Aligned_cols=42 Identities=7% Similarity=-0.032 Sum_probs=29.5
Q ss_pred ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC
Q 046394 23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC 65 (378)
Q Consensus 23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~ 65 (378)
..|.+-.||..+++...-+.+- ..++.+++++|+.+++++-.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEec
Confidence 3477778899888765555542 47889999999998887743
No 485
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=66.86 E-value=8.4 Score=36.95 Aligned_cols=69 Identities=4% Similarity=0.094 Sum_probs=50.8
Q ss_pred EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeec-----CCCEEEEEE
Q 046394 104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCH-----QGPVSALAF 158 (378)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h-----~~~v~~~~~ 158 (378)
+.+=|..+...+..|..|..++..++|.+.+..+++++-.|. +..| ...|-.++|
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicf 376 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICF 376 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhh
Confidence 566677777778888899999999999999999999988776 1111 112234667
Q ss_pred ecCCCEEEEEECCC
Q 046394 159 HPNGHLMATSGKDC 172 (378)
Q Consensus 159 sp~g~~l~t~~~d~ 172 (378)
+...++++.++.+|
T Consensus 377 s~~s~~r~~gsc~G 390 (788)
T KOG2109|consen 377 SEVSTIRTAGSCEG 390 (788)
T ss_pred hhhcceEeecccCC
Confidence 77777777777776
No 486
>PRK13614 lipoprotein LpqB; Provisional
Probab=65.30 E-value=72 Score=30.98 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCe----eeecCC-CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccc
Q 046394 133 FNGVVSLGHSGGT----MLCHQG-PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDF 205 (378)
Q Consensus 133 ~~~~l~~~~~d~~----~~~h~~-~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~ 205 (378)
+|.+....+.... ..+..+ .+.+++.++++..++..+.|+ -.+|-...+.....+ ....+..+|.++| .+
T Consensus 320 ~G~l~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~-~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g--~v 396 (573)
T PRK13614 320 DGELVRYENGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSR-TTLYTVSPGQPARALTSGSTLTRPSFSPQD--WV 396 (573)
T ss_pred CCeEEEecCCCcccCCCccCcCcccccceeecCCCceEEEecCCC-cEEEEecCCCcceeeecCCCccCCcccCCC--CE
Q ss_pred cCCCCCc--eEEEeeccCCc-------------------ceeeeEEcCCC-CeEEEecCCCeEEEEEcC
Q 046394 206 SGSHNYN--RYMGYSMVKGY-------------------QIGKVSFRPYE-DVLGIGHSMGVSGILIPG 252 (378)
Q Consensus 206 ~~~~~~~--~~~~~~~~~~~-------------------~v~~~~~sp~g-~~l~~~~~~g~~~~~~~~ 252 (378)
|...... .+..... .+. .|..+..|+|| +.++....+|.-.+++.+
T Consensus 397 Wtv~~g~~~~vv~~~~-~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~ 464 (573)
T PRK13614 397 WTAGPGGNGRIVAYRP-TGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAG 464 (573)
T ss_pred EEeeCCCCceEEEEec-CCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEE
No 487
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=65.29 E-value=1.3e+02 Score=28.63 Aligned_cols=164 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCEEEEE---eCCCcEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE
Q 046394 56 SGRYMAAA---GCKGYPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV 127 (378)
Q Consensus 56 ~g~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 127 (378)
+|-++++. ...+.+.++|..|...+.+...... ..+.. .|+.++. ..+..+|+ .|+.+..+.....
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~---- 187 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGG---- 187 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TT----
T ss_pred CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCc----
Q ss_pred EEEcCCCCEEEEEcCCCeeee---cCCCEEEEEEecCCCEEEEEEC-------------CCeEEEEEcCCceeeeee--c
Q 046394 128 IRVNPFNGVVSLGHSGGTMLC---HQGPVSALAFHPNGHLMATSGK-------------DCKIKIWDLRKYEVLQTL--P 189 (378)
Q Consensus 128 ~~~s~~~~~l~~~~~d~~~~~---h~~~v~~~~~sp~g~~l~t~~~-------------d~~i~iwd~~~~~~~~~~--~ 189 (378)
. | ..+..-|+|++|+.+.. ...|..+| .+|+.+..+ .
T Consensus 188 --------------------~~~~H----HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~ 242 (477)
T PF05935_consen 188 --------------------YYDFH----HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFF 242 (477)
T ss_dssp --------------------EE-B-----S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGG
T ss_pred --------------------ccccc----cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehH
Q ss_pred CCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcC-CCCeEEEecCCCeEEEEEcCCCC
Q 046394 190 GHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRP-YEDVLGIGHSMGVSGILIPGSGE 255 (378)
Q Consensus 190 ~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~g~~~~~~~~s~d 255 (378)
....-..+................-.-|-. ++++.+.+ ++.+|+++-....+-.+--.++.
T Consensus 243 d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H-----~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 243 DHLDPYRDTVLKPYPYGDISGSGGGRDWLH-----INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp GTS-TT--TTGGT--SSSSS-SSTTSBS-------EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred HhCCcccccccccccccccccCCCCCCccc-----cCccEEeCCCCeEEEEcCcceEEEEEECCCCc
No 488
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=64.36 E-value=1.1e+02 Score=27.38 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCceEEEEcCCCCEEEEEeCCCc------EEEEeCCC-----CeE-----EeeccCCC---------eeEEEE-----EE
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGY------PYFYNRDG-----TEL-----HCSKEHGE---------VLKLQF-----LL 95 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~------i~iwd~~~-----~~~-----~~~~~~~~---------~~~l~~-----~l 95 (378)
++..+|.+.|++..+++.+.+|. ++.+++.. ..+ ..+....+ .-++++ ++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788999965556666667776 65555322 111 11211111 123444 44
Q ss_pred EEEeCC------CeEEEEEcCCCcEEEEEec---------------CCCCeeEEEEcCCCCEEEEEcC
Q 046394 96 ASINKL------GQLRYQNVTMGEIVGNFWT---------------GLGRTDVIRVNPFNGVVSLGHS 142 (378)
Q Consensus 96 ~s~~~d------~~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~~s~~~~~l~~~~~ 142 (378)
++.=.+ ..|..++.. |+....+.. .+..+.+|+++|+|+.|+++..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 544445 667777765 655444311 2234667888888875555443
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.01 E-value=31 Score=23.93 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=19.3
Q ss_pred EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE
Q 046394 98 INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV 136 (378)
Q Consensus 98 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 136 (378)
+..+|.+.-||..+++....+.+ -...+.|++++|+..
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~ 70 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESF 70 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCE
Confidence 34568899999988775433332 223344444444443
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=63.94 E-value=1e+02 Score=27.46 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=38.5
Q ss_pred EEEEEecCCCEEEEEECC------CeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceee
Q 046394 154 SALAFHPNGHLMATSGKD------CKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGK 227 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (378)
.+|++.++|.++++.-.+ ..|..+|.. |..+..+.-+ ..+...+.+ ..... .....-+
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP-~~~~~~~~~------------~~~~~--~N~G~E~ 151 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVP-AAFLPDANG------------TSGRR--NNRGFEG 151 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccc-cccccccCc------------ccccc--CCCCeEE
Confidence 466776677777766666 666666654 5544433000 000000000 01111 2345788
Q ss_pred eEEcCCCCeEEEecCCC
Q 046394 228 VSFRPYEDVLGIGHSMG 244 (378)
Q Consensus 228 ~~~sp~g~~l~~~~~~g 244 (378)
|+++|+|+.|.++....
T Consensus 152 la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 152 LAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEECCCCCEEEEEECcc
Confidence 99999998666555443
No 491
>PRK13615 lipoprotein LpqB; Provisional
Probab=63.76 E-value=40 Score=32.50 Aligned_cols=83 Identities=6% Similarity=-0.061 Sum_probs=50.6
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEEEEecCCCccccCCCCCceEE-------------Eeec
Q 046394 154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSGSHNYNRYM-------------GYSM 219 (378)
Q Consensus 154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~~~~~~~~~-------------~~~~ 219 (378)
.+++.++++..++....++.+.++.... .....+ ....+..+|.++| .+|......... ....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~~~~~~~~~Lt~PS~d~~g--~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDR-DAVLLDTRPGLVAPSLDAQG--YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCC-cceeeccCCccccCcCcCCC--CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 7789999999998888788888876551 222222 3446777777776 344322211110 1111
Q ss_pred cCCcceeeeEEcCCCCeEEE
Q 046394 220 VKGYQIGKVSFRPYEDVLGI 239 (378)
Q Consensus 220 ~~~~~v~~~~~sp~g~~l~~ 239 (378)
..+..|..+..|+||--++.
T Consensus 414 ~~~~~I~~lrvSrDG~R~Av 433 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLV 433 (557)
T ss_pred cCCCeeEEEEeCCCccEEEE
Confidence 12357999999999975554
No 492
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=62.73 E-value=72 Score=28.51 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=19.0
Q ss_pred cCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394 149 HQGPVSALAFHPNGHLMATSGKDCKIK 175 (378)
Q Consensus 149 h~~~v~~~~~sp~g~~l~t~~~d~~i~ 175 (378)
....+..|++.|||.++++...+|.|.
T Consensus 304 ~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp SSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 344788889999988888777777653
No 493
>PRK10115 protease 2; Provisional
Probab=62.27 E-value=1.8e+02 Score=29.24 Aligned_cols=94 Identities=11% Similarity=-0.098 Sum_probs=49.9
Q ss_pred CceEEEEcCCCCEEEEEeCC-C----cEEEEeC-CCCeEEeeccCCCe-eEEEE------EEEEEeCC-----CeEEEEE
Q 046394 47 GPYTLDFTSSGRYMAAAGCK-G----YPYFYNR-DGTELHCSKEHGEV-LKLQF------LLASINKL-----GQLRYQN 108 (378)
Q Consensus 47 ~v~~~~~sp~g~~l~~~~~d-g----~i~iwd~-~~~~~~~~~~~~~~-~~l~~------~l~s~~~d-----~~i~iwd 108 (378)
.+..+.+||||++|+.+... | .|++.|+ +|..+.. ...++ ..++| ++++...+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 35678999999988876442 2 5778885 3432211 11122 44667 44443322 4677888
Q ss_pred cCCC--cEEEEEecCCCCee-EEEEcCCCCEEEEEcC
Q 046394 109 VTMG--EIVGNFWTGLGRTD-VIRVNPFNGVVSLGHS 142 (378)
Q Consensus 109 ~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~ 142 (378)
+.++ +....+........ .+..+.++.+++..+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~ 242 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA 242 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE
Confidence 8877 33344443333333 2233336665554443
No 494
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=61.86 E-value=11 Score=36.22 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=31.1
Q ss_pred eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee
Q 046394 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT 187 (378)
Q Consensus 146 ~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~ 187 (378)
+..|..++..++|.+.|..+++++..| ..|.+++....+.+
T Consensus 311 fkAhkspiSaLcfdqsgsllViasi~g-~nVnvfRimet~~t 351 (788)
T KOG2109|consen 311 FKAHKSPISALCFDQSGSLLVIASITG-RNVNVFRIMETVCT 351 (788)
T ss_pred eeeecCcccccccccCceEEEEEeecc-ceeeeEEecccccc
Confidence 889999999999999999999998776 34444444443333
No 495
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=61.45 E-value=1.2e+02 Score=26.90 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=48.5
Q ss_pred EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394 94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCK 173 (378)
Q Consensus 94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~ 173 (378)
+.++-+..|.|..+|..+|+..... .-++....++|. |.++++|...- .++.....+-+.. + +..- ..-
T Consensus 215 LwvldsgtGev~~vD~~~G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~---R~~~~f~glpl~~--~-l~~~--~CG 283 (335)
T TIGR03032 215 LWLLNSGRGELGYVDPQAGKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKL---RESRVFGGLPIEE--R-LDAL--GCG 283 (335)
T ss_pred EEEEECCCCEEEEEcCCCCcEEEEE-ECCCCCccccee--CCEEEEEeccc---cCCCCcCCCchhh--h-hhhh--ccc
Confidence 6677777889999998777643332 223567778887 77776654322 1122112222211 1 1000 144
Q ss_pred EEEEEcCCceeeeee
Q 046394 174 IKIWDLRKYEVLQTL 188 (378)
Q Consensus 174 i~iwd~~~~~~~~~~ 188 (378)
|.+.|+++|..+..+
T Consensus 284 v~vidl~tG~vv~~l 298 (335)
T TIGR03032 284 VAVIDLNSGDVVHWL 298 (335)
T ss_pred EEEEECCCCCEEEEE
Confidence 888999999887766
No 496
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=58.61 E-value=1.6e+02 Score=27.44 Aligned_cols=129 Identities=16% Similarity=0.046 Sum_probs=76.5
Q ss_pred CceeeEEEeccceeeeeecccce-----eeEEeecCCCCceEEEEc---C--CCCEEEEEeCCCcEEEEeC---CCC---
Q 046394 14 GVEKTWRIKQEAIAREVDILSSR-----NQYDIMLPELGPYTLDFT---S--SGRYMAAAGCKGYPYFYNR---DGT--- 77 (378)
Q Consensus 14 ~~~~~~~~~~~~~i~~~d~~~~~-----~~~~l~~~~~~v~~~~~s---p--~g~~l~~~~~dg~i~iwd~---~~~--- 77 (378)
+.++.+..+..|.+++|+..... .+..... ..+|..+..- + +...||+- .-..+.||.+ .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCccc
Confidence 45678888889999999985543 2222222 2566666543 2 22355553 4557788873 222
Q ss_pred ----eEEeeccCCC---eeEEEE----------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEE
Q 046394 78 ----ELHCSKEHGE---VLKLQF----------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLG 140 (378)
Q Consensus 78 ----~~~~~~~~~~---~~~l~~----------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 140 (378)
.+..+..|.= ...+++ ++..-+.||.+.+++-+.......++. ---...++|.+....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 2333333331 122333 788889999999999765443333332 3334567888887777777
Q ss_pred cCCCe
Q 046394 141 HSGGT 145 (378)
Q Consensus 141 ~~d~~ 145 (378)
+....
T Consensus 193 sss~~ 197 (418)
T PF14727_consen 193 SSSWT 197 (418)
T ss_pred cCcee
Confidence 76654
No 497
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.48 E-value=2e+02 Score=28.69 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=65.3
Q ss_pred cCCceeeEEEeccceeeeeecccceeeEE-e--ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC
Q 046394 12 AEGVEKTWRIKQEAIAREVDILSSRNQYD-I--MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE 87 (378)
Q Consensus 12 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-l--~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~ 87 (378)
=+..+..+.+..++++++|++........ . ......|..+.|..+|-.+++ .+|.+.+-+ .....+..+..-..
T Consensus 91 Ws~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~ 168 (829)
T KOG2280|consen 91 WSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPY 168 (829)
T ss_pred ccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCC
Confidence 34477889999999999999854432221 1 222334665556556644444 456666665 33323333333221
Q ss_pred e--eEEEE----------EEEEEe-CCCeEEEEEcCCCc-EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394 88 V--LKLQF----------LLASIN-KLGQLRYQNVTMGE-IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT 145 (378)
Q Consensus 88 ~--~~l~~----------~l~s~~-~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 145 (378)
. ...+| .++-.. ..+ ..++....+. ....+....+.+..+..||+.++|+--...|.
T Consensus 169 ~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~ 239 (829)
T KOG2280|consen 169 NELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK 239 (829)
T ss_pred ccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence 1 22233 111000 000 0111111111 12223333467788899999998886655555
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=58.32 E-value=1.7e+02 Score=27.63 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046394 45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD 75 (378)
Q Consensus 45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~ 75 (378)
-..++.|+|.|||+.|++--..|.|++++..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~ 59 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPE 59 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCC
Confidence 3578899999999876665446999999843
No 499
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=58.24 E-value=2.2e+02 Score=29.03 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=25.2
Q ss_pred CCEEEEEEec-CCCEEEEEECCCeEEEEEc
Q 046394 151 GPVSALAFHP-NGHLMATSGKDCKIKIWDL 179 (378)
Q Consensus 151 ~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~ 179 (378)
.+..+++|+| +...||.....|...|||+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEe
Confidence 3567899999 5568999999999999999
No 500
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=57.17 E-value=1.5e+02 Score=26.87 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=16.4
Q ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEE-eC
Q 046394 46 LGPYTLDFTSSGRYMAAAGCKGYPYFY-NR 74 (378)
Q Consensus 46 ~~v~~~~~sp~g~~l~~~~~dg~i~iw-d~ 74 (378)
..+..|++.++| |++++.. .|..| |.
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~-~i~~~~d~ 98 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPP-DILFLRDK 98 (367)
T ss_pred CCccceeEecCC--EEEeCCC-eEEEEeCC
Confidence 456899999998 4444444 45544 54
Done!