Query 046395
Match_columns 535
No_of_seqs 513 out of 3115
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 8.6E-32 1.9E-36 270.7 24.3 252 176-440 16-280 (281)
2 COG2730 BglC Endoglucanase [Ca 99.9 1.2E-24 2.5E-29 230.3 18.5 283 155-441 48-366 (407)
3 cd00257 Fascin Fascin-like dom 99.7 6.6E-17 1.4E-21 142.1 14.9 108 18-133 2-109 (119)
4 TIGR03356 BGL beta-galactosida 99.7 3.4E-16 7.4E-21 166.5 15.1 181 127-327 9-212 (427)
5 COG2723 BglB Beta-glucosidase/ 99.7 3.9E-16 8.4E-21 162.7 14.2 156 126-299 11-171 (460)
6 PRK13511 6-phospho-beta-galact 99.6 8E-15 1.7E-19 157.7 12.6 149 126-299 12-163 (469)
7 PLN02849 beta-glucosidase 99.6 3.8E-15 8.3E-20 160.7 10.0 154 118-299 33-190 (503)
8 TIGR01233 lacG 6-phospho-beta- 99.6 1.1E-14 2.5E-19 156.2 13.4 149 126-299 11-162 (467)
9 PLN02814 beta-glucosidase 99.6 4.9E-15 1.1E-19 159.9 9.5 154 118-299 31-188 (504)
10 PLN02998 beta-glucosidase 99.6 4.9E-15 1.1E-19 159.7 9.4 156 118-299 34-193 (497)
11 PRK15014 6-phospho-beta-glucos 99.6 9.1E-15 2E-19 157.1 10.6 157 126-298 13-180 (477)
12 PF02449 Glyco_hydro_42: Beta- 99.6 1.6E-14 3.5E-19 151.8 11.4 145 175-323 5-168 (374)
13 PRK09589 celA 6-phospho-beta-g 99.5 1.6E-14 3.6E-19 155.2 10.4 157 127-299 12-179 (476)
14 PRK09852 cryptic 6-phospho-bet 99.5 1.8E-14 3.9E-19 154.5 10.5 155 127-299 12-183 (474)
15 PRK09593 arb 6-phospho-beta-gl 99.5 1.6E-14 3.4E-19 155.5 10.0 158 126-299 13-185 (478)
16 PF00232 Glyco_hydro_1: Glycos 99.5 9.7E-15 2.1E-19 157.1 2.7 183 126-328 12-218 (455)
17 PRK10150 beta-D-glucuronidase; 99.5 8E-12 1.7E-16 139.4 23.9 230 182-441 315-559 (604)
18 PF07745 Glyco_hydro_53: Glyco 99.5 1E-11 2.2E-16 126.7 22.1 223 182-436 26-295 (332)
19 PF06268 Fascin: Fascin domain 99.4 1.2E-12 2.6E-17 113.6 12.1 100 28-134 2-102 (111)
20 COG1874 LacA Beta-galactosidas 99.4 1.2E-11 2.6E-16 135.7 17.8 165 175-344 25-212 (673)
21 COG3934 Endo-beta-mannanase [C 99.4 2E-12 4.4E-17 132.8 9.8 246 173-440 19-281 (587)
22 KOG0626 Beta-glucosidase, lact 99.4 1.9E-12 4.2E-17 136.3 9.8 160 117-299 39-204 (524)
23 PF02836 Glyco_hydro_2_C: Glyc 99.3 4.6E-10 1E-14 114.5 20.3 120 183-331 39-158 (298)
24 cd00257 Fascin Fascin-like dom 99.1 5E-10 1.1E-14 98.3 9.6 77 17-100 43-119 (119)
25 PRK10340 ebgA cryptic beta-D-g 99.0 2.1E-08 4.7E-13 117.4 20.3 188 182-440 357-548 (1021)
26 COG3867 Arabinogalactan endo-1 99.0 9.8E-08 2.1E-12 93.3 20.6 199 183-404 66-287 (403)
27 PRK09525 lacZ beta-D-galactosi 99.0 2.8E-08 6.1E-13 116.3 19.8 115 183-331 374-489 (1027)
28 smart00633 Glyco_10 Glycosyl h 99.0 9.6E-08 2.1E-12 95.2 21.0 199 204-439 3-228 (254)
29 PF06268 Fascin: Fascin domain 98.9 8.4E-09 1.8E-13 89.4 9.1 77 17-100 35-111 (111)
30 PF03198 Glyco_hydro_72: Gluca 98.7 4.8E-07 1E-11 90.5 15.5 120 181-325 54-176 (314)
31 PF01229 Glyco_hydro_39: Glyco 98.7 1.3E-07 2.9E-12 102.9 12.0 258 165-439 29-324 (486)
32 PF12876 Cellulase-like: Sugar 98.6 4.2E-08 9.2E-13 81.3 5.5 78 278-357 1-88 (88)
33 PF01301 Glyco_hydro_35: Glyco 98.6 4E-07 8.7E-12 93.6 13.5 135 183-329 27-178 (319)
34 PF06229 FRG1: FRG1-like famil 98.6 1.2E-07 2.5E-12 89.5 8.4 82 16-103 37-118 (191)
35 PF06229 FRG1: FRG1-like famil 98.5 5.9E-07 1.3E-11 84.7 10.6 98 22-131 4-103 (191)
36 PF13204 DUF4038: Protein of u 98.5 6.3E-06 1.4E-10 83.7 17.1 137 183-332 33-187 (289)
37 PF14488 DUF4434: Domain of un 98.4 5.9E-06 1.3E-10 76.7 14.3 134 182-332 22-162 (166)
38 PLN03059 beta-galactosidase; P 98.2 2.1E-05 4.5E-10 88.6 14.6 141 183-331 62-222 (840)
39 PF00331 Glyco_hydro_10: Glyco 98.0 6.1E-05 1.3E-09 77.6 13.6 226 185-440 26-288 (320)
40 COG3250 LacZ Beta-galactosidas 98.0 4.1E-05 8.8E-10 87.1 12.0 110 182-330 323-432 (808)
41 COG3693 XynA Beta-1,4-xylanase 97.7 0.0036 7.9E-08 62.9 19.0 169 204-403 69-261 (345)
42 COG5309 Exo-beta-1,3-glucanase 97.6 0.0061 1.3E-07 59.6 18.1 212 183-441 66-286 (305)
43 PF04601 DUF569: Protein of un 97.5 0.0021 4.6E-08 57.5 11.9 105 15-125 5-118 (142)
44 PF14587 Glyco_hydr_30_2: O-Gl 97.4 0.019 4E-07 59.8 19.4 105 225-330 108-225 (384)
45 PRK13188 bifunctional UDP-3-O- 97.0 0.00047 1E-08 73.7 3.7 40 487-527 315-365 (464)
46 TIGR02103 pullul_strch alpha-1 97.0 0.18 4E-06 58.5 24.4 102 220-333 403-527 (898)
47 PF02055 Glyco_hydro_30: O-Gly 96.9 0.12 2.7E-06 56.3 20.9 231 191-440 111-382 (496)
48 PF11790 Glyco_hydro_cc: Glyco 96.9 0.032 7E-07 55.0 15.2 134 273-428 54-201 (239)
49 PRK00006 fabZ (3R)-hydroxymyri 96.9 0.00096 2.1E-08 60.6 4.0 37 491-528 5-53 (147)
50 PF13200 DUF4015: Putative gly 96.7 0.29 6.3E-06 50.1 20.5 247 183-438 16-313 (316)
51 KOG0496 Beta-galactosidase [Ca 96.6 0.019 4.1E-07 62.9 12.1 108 183-298 52-176 (649)
52 PF05089 NAGLU: Alpha-N-acetyl 96.6 0.0054 1.2E-07 62.5 7.0 146 183-329 22-216 (333)
53 KOG2233 Alpha-N-acetylglucosam 96.5 0.024 5.2E-07 59.6 11.1 147 183-330 81-281 (666)
54 KOG3962 Predicted actin-bundli 96.2 0.023 5E-07 54.0 8.3 103 15-123 46-149 (246)
55 PLN02161 beta-amylase 96.2 0.073 1.6E-06 56.9 12.8 125 183-326 120-257 (531)
56 TIGR01515 branching_enzym alph 96.2 0.19 4.2E-06 56.5 17.1 148 183-330 160-348 (613)
57 PLN02801 beta-amylase 96.1 0.05 1.1E-06 58.1 11.2 60 183-246 40-101 (517)
58 PLN02877 alpha-amylase/limit d 96.1 2.2 4.8E-05 50.0 25.3 110 220-333 465-598 (970)
59 PLN00197 beta-amylase; Provisi 96.0 0.05 1.1E-06 58.6 10.9 60 183-246 130-191 (573)
60 PRK12313 glycogen branching en 96.0 0.27 5.8E-06 55.7 17.5 145 183-330 174-361 (633)
61 COG5520 O-Glycosyl hydrolase [ 96.0 0.51 1.1E-05 48.3 17.2 222 191-441 77-313 (433)
62 PLN02803 beta-amylase 95.9 0.062 1.4E-06 57.7 10.8 60 183-246 110-171 (548)
63 PLN02705 beta-amylase 95.8 0.063 1.4E-06 58.3 10.7 60 183-246 271-332 (681)
64 KOG2230 Predicted beta-mannosi 95.8 0.083 1.8E-06 56.7 11.4 151 180-360 357-524 (867)
65 PLN02447 1,4-alpha-glucan-bran 95.8 0.33 7.1E-06 55.4 16.8 146 182-330 253-445 (758)
66 PLN02905 beta-amylase 95.6 0.078 1.7E-06 57.8 10.5 60 183-246 289-350 (702)
67 PRK05402 glycogen branching en 95.5 0.48 1E-05 54.5 17.2 146 182-330 268-457 (726)
68 COG0296 GlgB 1,4-alpha-glucan 95.5 1.2 2.6E-05 49.7 19.3 142 181-326 166-352 (628)
69 TIGR02402 trehalose_TreZ malto 95.5 0.35 7.6E-06 53.6 15.4 133 184-324 115-271 (542)
70 PLN02960 alpha-amylase 95.4 0.67 1.4E-05 53.4 17.4 147 181-330 418-610 (897)
71 PF01373 Glyco_hydro_14: Glyco 95.4 0.022 4.7E-07 59.6 5.2 60 183-246 19-80 (402)
72 smart00642 Aamy Alpha-amylase 95.3 0.066 1.4E-06 49.8 7.7 60 183-242 22-91 (166)
73 TIGR02104 pulA_typeI pullulana 95.1 0.54 1.2E-05 52.9 15.5 136 184-330 168-348 (605)
74 PRK12568 glycogen branching en 94.9 1.2 2.5E-05 50.9 17.6 144 182-330 272-461 (730)
75 PRK10785 maltodextrin glucosid 94.7 0.76 1.6E-05 51.6 15.5 54 183-241 182-246 (598)
76 PF14200 RicinB_lectin_2: Rici 94.7 0.21 4.6E-06 42.3 8.7 82 17-100 14-104 (105)
77 PF03662 Glyco_hydro_79n: Glyc 94.6 0.055 1.2E-06 55.4 5.5 28 219-246 107-134 (319)
78 PRK14705 glycogen branching en 94.1 1.3 2.9E-05 53.1 16.3 143 183-330 769-957 (1224)
79 COG1523 PulA Type II secretory 94.0 0.37 8E-06 54.5 10.9 64 182-245 202-292 (697)
80 COG3623 SgaU Putative L-xylulo 93.9 2 4.2E-05 41.7 13.8 118 216-359 91-214 (287)
81 PF00128 Alpha-amylase: Alpha 93.8 0.14 3E-06 51.5 6.6 56 183-241 7-72 (316)
82 TIGR02102 pullulan_Gpos pullul 93.7 1.9 4.1E-05 51.5 16.4 99 220-329 554-670 (1111)
83 PRK14706 glycogen branching en 93.5 3 6.5E-05 47.2 17.0 142 183-330 171-357 (639)
84 PF14871 GHL6: Hypothetical gl 93.4 0.86 1.9E-05 40.6 10.1 98 183-282 3-123 (132)
85 PF02638 DUF187: Glycosyl hydr 93.4 0.72 1.6E-05 47.4 11.0 147 183-331 22-229 (311)
86 TIGR02100 glgX_debranch glycog 93.2 0.65 1.4E-05 52.9 11.3 57 185-241 189-265 (688)
87 PRK03705 glycogen debranching 93.0 0.91 2E-05 51.4 12.1 57 185-241 184-262 (658)
88 COG3534 AbfA Alpha-L-arabinofu 92.0 8.3 0.00018 41.1 16.4 158 183-358 52-245 (501)
89 PF01120 Alpha_L_fucos: Alpha- 91.9 1.5 3.4E-05 45.7 11.3 135 180-328 91-242 (346)
90 PRK09441 cytoplasmic alpha-amy 90.1 0.6 1.3E-05 51.0 6.5 59 183-241 25-101 (479)
91 PRK07379 coproporphyrinogen II 89.6 2.5 5.4E-05 45.0 10.5 121 180-326 112-248 (400)
92 COG0635 HemN Coproporphyrinoge 89.2 3 6.5E-05 44.7 10.8 122 179-326 133-269 (416)
93 PLN00196 alpha-amylase; Provis 89.1 1.2 2.5E-05 47.9 7.5 59 183-241 47-112 (428)
94 TIGR02403 trehalose_treC alpha 88.6 1.3 2.8E-05 49.2 7.7 56 183-241 30-95 (543)
95 cd06565 GH20_GcnA-like Glycosy 88.4 17 0.00038 37.0 15.4 144 183-332 20-187 (301)
96 PRK05799 coproporphyrinogen II 88.3 3.9 8.5E-05 43.0 10.9 122 179-326 95-232 (374)
97 cd02742 GH20_hexosaminidase Be 88.3 24 0.00053 36.0 16.4 144 182-332 18-193 (303)
98 TIGR01212 radical SAM protein, 88.2 3.8 8.3E-05 41.9 10.4 127 178-327 118-257 (302)
99 PRK05904 coproporphyrinogen II 88.2 4.4 9.5E-05 42.4 11.0 123 178-326 98-231 (353)
100 PLN02361 alpha-amylase 88.1 1.4 2.9E-05 47.0 7.2 64 175-241 26-96 (401)
101 PRK06294 coproporphyrinogen II 87.9 4.7 0.0001 42.4 11.2 122 179-326 99-236 (370)
102 TIGR00539 hemN_rel putative ox 87.9 4.2 9.1E-05 42.6 10.7 123 179-325 96-228 (360)
103 PRK09505 malS alpha-amylase; R 87.6 1.6 3.4E-05 49.7 7.7 59 183-241 233-312 (683)
104 PRK08208 coproporphyrinogen II 87.4 3.5 7.7E-05 44.3 10.0 122 179-326 137-268 (430)
105 PRK05660 HemN family oxidoredu 87.3 5 0.00011 42.4 10.9 122 179-326 103-236 (378)
106 PRK10933 trehalose-6-phosphate 87.2 1.8 3.9E-05 48.1 7.8 55 183-241 36-101 (551)
107 PF07468 Agglutinin: Agglutini 87.1 7.8 0.00017 35.2 10.3 100 21-122 8-123 (153)
108 PRK14510 putative bifunctional 86.6 1.4 3E-05 53.5 6.9 59 183-241 190-267 (1221)
109 cd06564 GH20_DspB_LnbB-like Gl 86.6 17 0.00038 37.4 14.3 142 182-332 19-202 (326)
110 TIGR02456 treS_nterm trehalose 86.6 1.8 4E-05 48.0 7.5 56 183-241 31-96 (539)
111 PRK09057 coproporphyrinogen II 86.4 5.4 0.00012 42.1 10.6 122 179-326 100-236 (380)
112 PRK13347 coproporphyrinogen II 86.0 4.5 9.8E-05 43.8 10.0 123 179-325 148-283 (453)
113 PRK08599 coproporphyrinogen II 85.4 5.8 0.00013 41.8 10.3 122 179-326 96-233 (377)
114 KOG0470 1,4-alpha-glucan branc 85.2 4.3 9.2E-05 45.6 9.2 59 181-241 256-331 (757)
115 PF00167 FGF: Fibroblast growt 85.0 11 0.00025 32.7 10.3 74 19-99 2-76 (122)
116 PRK09058 coproporphyrinogen II 84.3 12 0.00025 40.6 12.1 122 179-326 159-297 (449)
117 PF14200 RicinB_lectin_2: Rici 84.2 6.3 0.00014 33.1 8.1 69 55-125 4-80 (105)
118 PRK05628 coproporphyrinogen II 83.8 12 0.00026 39.5 11.7 122 179-326 104-241 (375)
119 PLN03244 alpha-amylase; Provis 83.7 16 0.00035 42.0 12.9 111 219-330 439-585 (872)
120 PRK06582 coproporphyrinogen II 83.6 9.5 0.00021 40.5 10.9 122 179-326 107-243 (390)
121 PRK08446 coproporphyrinogen II 83.3 10 0.00022 39.6 10.9 124 179-326 94-224 (350)
122 PRK08207 coproporphyrinogen II 82.6 9.4 0.0002 41.8 10.6 123 178-326 264-400 (488)
123 COG3589 Uncharacterized conser 82.3 3 6.4E-05 42.7 6.0 52 183-242 19-70 (360)
124 COG3664 XynB Beta-xylosidase [ 81.9 14 0.00031 38.8 10.9 224 190-440 15-257 (428)
125 PLN02784 alpha-amylase 81.5 4.5 9.7E-05 46.7 7.7 58 183-241 524-588 (894)
126 PRK09249 coproporphyrinogen II 81.2 10 0.00022 41.1 10.2 123 179-325 147-282 (453)
127 COG0764 FabA 3-hydroxymyristoy 80.4 1.1 2.4E-05 40.7 2.0 20 508-528 32-51 (147)
128 PF04601 DUF569: Protein of un 80.3 9.1 0.0002 34.5 7.8 64 62-125 6-69 (142)
129 smart00812 Alpha_L_fucos Alpha 79.5 89 0.0019 33.1 16.4 138 180-333 81-235 (384)
130 TIGR02401 trehalose_TreY malto 78.6 6.3 0.00014 45.6 7.8 58 183-241 19-85 (825)
131 COG0366 AmyA Glycosidases [Car 78.2 4.1 8.8E-05 44.3 6.1 58 184-241 33-97 (505)
132 TIGR01749 fabA beta-hydroxyacy 78.2 1.6 3.6E-05 40.6 2.5 18 510-528 51-68 (169)
133 smart00791 Agglutinin Amaranth 77.1 50 0.0011 29.5 11.1 98 19-122 7-111 (139)
134 PRK14565 triosephosphate isome 76.4 42 0.00091 33.0 11.9 131 183-343 75-209 (237)
135 PRK14511 maltooligosyl trehalo 76.3 8 0.00017 45.0 7.8 59 183-241 23-89 (879)
136 PF12891 Glyco_hydro_44: Glyco 74.7 5.7 0.00012 39.0 5.3 66 266-334 104-182 (239)
137 PRK08898 coproporphyrinogen II 74.7 25 0.00054 37.4 10.7 122 179-326 118-250 (394)
138 PRK13209 L-xylulose 5-phosphat 73.8 13 0.00028 37.2 7.9 59 183-243 102-160 (283)
139 TIGR00538 hemN oxygen-independ 73.7 14 0.0003 40.1 8.6 122 179-324 147-281 (455)
140 cd06563 GH20_chitobiase-like T 73.4 1.1E+02 0.0024 31.9 15.0 146 181-331 19-226 (357)
141 TIGR01210 conserved hypothetic 73.4 41 0.00089 34.5 11.6 102 178-298 112-215 (313)
142 KOG2566 Beta-glucocerebrosidas 73.1 1.3E+02 0.0028 31.7 17.7 228 191-440 135-407 (518)
143 cd06568 GH20_SpHex_like A subg 72.5 46 0.00099 34.5 11.7 141 182-331 20-196 (329)
144 PF01261 AP_endonuc_2: Xylose 72.3 35 0.00075 31.8 10.2 128 183-329 30-163 (213)
145 cd00058 FGF Acidic and basic f 71.7 28 0.0006 30.6 8.5 72 15-92 37-112 (123)
146 KOG3962 Predicted actin-bundli 70.3 6.8 0.00015 37.7 4.5 73 14-93 91-163 (246)
147 TIGR01211 ELP3 histone acetylt 69.8 28 0.00062 38.4 9.9 63 177-242 200-263 (522)
148 PRK05174 3-hydroxydecanoyl-(ac 69.8 3.6 7.9E-05 38.4 2.6 18 510-528 54-71 (172)
149 PF07555 NAGidase: beta-N-acet 69.6 47 0.001 34.0 10.8 96 177-294 12-111 (306)
150 PF01261 AP_endonuc_2: Xylose 69.2 7.6 0.00017 36.4 4.8 62 183-244 74-135 (213)
151 PF03659 Glyco_hydro_71: Glyco 69.0 34 0.00074 36.3 10.0 49 183-242 20-68 (386)
152 cd06570 GH20_chitobiase-like_1 67.9 60 0.0013 33.3 11.3 59 182-243 20-90 (311)
153 PRK14507 putative bifunctional 67.7 15 0.00032 45.9 7.8 58 183-242 761-828 (1693)
154 PF07488 Glyco_hydro_67M: Glyc 67.4 28 0.0006 35.4 8.3 98 183-296 60-159 (328)
155 PRK09936 hypothetical protein; 67.2 42 0.00092 33.9 9.6 103 183-299 41-146 (296)
156 cd02875 GH18_chitobiase Chitob 66.9 57 0.0012 34.2 11.2 90 224-329 67-156 (358)
157 PF05913 DUF871: Bacterial pro 66.6 8.2 0.00018 40.4 4.7 53 183-243 17-69 (357)
158 TIGR00542 hxl6Piso_put hexulos 66.3 25 0.00053 35.2 8.1 59 183-243 97-155 (279)
159 cd00311 TIM Triosephosphate is 64.2 1.5E+02 0.0033 29.2 13.3 52 183-242 74-125 (242)
160 PF00167 FGF: Fibroblast growt 64.2 56 0.0012 28.3 8.9 60 67-129 4-65 (122)
161 TIGR02455 TreS_stutzeri trehal 64.2 22 0.00047 40.0 7.5 59 183-242 77-151 (688)
162 cd06562 GH20_HexA_HexB-like Be 63.5 1.7E+02 0.0038 30.4 14.0 148 182-331 20-210 (348)
163 PRK13210 putative L-xylulose 5 63.5 15 0.00033 36.6 5.9 59 183-243 97-155 (284)
164 COG1649 Uncharacterized protei 62.9 52 0.0011 35.2 9.8 149 183-331 67-272 (418)
165 COG3623 SgaU Putative L-xylulo 62.9 1.3E+02 0.0029 29.5 11.6 119 182-326 20-149 (287)
166 PTZ00333 triosephosphate isome 62.9 1.2E+02 0.0025 30.3 11.8 53 183-243 79-131 (255)
167 smart00442 FGF Acidic and basi 62.3 88 0.0019 27.5 9.8 72 17-94 43-118 (126)
168 KOG3770 Acid sphingomyelinase 61.2 62 0.0013 35.9 10.2 110 171-293 284-408 (577)
169 TIGR00433 bioB biotin syntheta 60.8 1.5E+02 0.0032 29.8 12.6 126 180-331 120-248 (296)
170 PF07468 Agglutinin: Agglutini 60.6 55 0.0012 29.8 8.2 86 15-101 53-152 (153)
171 COG3280 TreY Maltooligosyl tre 60.5 15 0.00033 41.6 5.5 79 158-252 10-103 (889)
172 TIGR00542 hxl6Piso_put hexulos 60.3 80 0.0017 31.4 10.5 146 187-359 59-212 (279)
173 TIGR03471 HpnJ hopanoid biosyn 58.3 44 0.00095 36.4 8.7 62 181-245 285-348 (472)
174 PRK14567 triosephosphate isome 57.3 2E+02 0.0043 28.7 12.3 52 183-242 75-126 (253)
175 COG0276 HemH Protoheme ferro-l 57.2 1.3E+02 0.0029 30.9 11.4 141 175-334 98-268 (320)
176 PRK09856 fructoselysine 3-epim 56.9 1.2E+02 0.0027 29.8 11.2 121 188-329 55-180 (275)
177 PF04055 Radical_SAM: Radical 56.4 17 0.00038 32.1 4.5 62 182-246 89-153 (166)
178 PRK07094 biotin synthase; Prov 56.0 57 0.0012 33.4 8.8 128 181-333 127-258 (323)
179 COG1099 Predicted metal-depend 55.8 34 0.00074 33.3 6.3 119 182-332 13-135 (254)
180 cd07937 DRE_TIM_PC_TC_5S Pyruv 55.3 63 0.0014 32.4 8.7 48 181-242 92-139 (275)
181 KOG0471 Alpha-amylase [Carbohy 55.2 21 0.00046 39.7 5.7 60 183-242 43-109 (545)
182 PF14701 hDGE_amylase: glucano 55.1 47 0.001 35.6 7.9 60 183-242 25-98 (423)
183 cd02871 GH18_chitinase_D-like 55.0 1.4E+02 0.0031 30.4 11.5 95 220-330 59-154 (312)
184 cd06547 GH85_ENGase Endo-beta- 54.3 40 0.00086 35.1 7.2 96 226-329 51-146 (339)
185 KOG1066 Glucosidase II catalyt 53.8 35 0.00076 38.5 6.8 118 179-299 367-513 (915)
186 cd01287 FabA FabA, beta-hydrox 53.2 8.2 0.00018 35.2 1.7 36 491-527 7-44 (150)
187 cd07948 DRE_TIM_HCS Saccharomy 52.2 18 0.0004 36.1 4.2 62 181-243 72-134 (262)
188 cd06593 GH31_xylosidase_YicI Y 51.5 1.9E+02 0.0041 29.3 11.7 59 183-242 27-87 (308)
189 PRK04302 triosephosphate isome 51.2 2.3E+02 0.0051 27.2 13.8 107 183-333 75-182 (223)
190 PRK13210 putative L-xylulose 5 50.6 1.8E+02 0.0039 28.7 11.3 95 186-295 58-155 (284)
191 TIGR01531 glyc_debranch glycog 50.6 46 0.001 40.8 7.7 55 183-241 135-205 (1464)
192 cd02874 GH18_CFLE_spore_hydrol 50.4 64 0.0014 32.8 8.0 90 224-322 48-137 (313)
193 PRK09997 hydroxypyruvate isome 50.4 33 0.00072 33.8 5.8 59 183-243 88-146 (258)
194 cd07939 DRE_TIM_NifV Streptomy 49.1 38 0.00083 33.6 6.0 59 182-241 71-130 (259)
195 COG2108 Uncharacterized conser 49.0 1.5E+02 0.0033 30.5 10.0 101 179-319 120-220 (353)
196 PRK04161 tagatose 1,6-diphosph 48.9 28 0.00061 35.8 4.9 61 181-245 108-168 (329)
197 cd06522 GH25_AtlA-like AtlA is 48.0 2.4E+02 0.0052 26.5 13.4 122 176-330 8-130 (192)
198 cd07944 DRE_TIM_HOA_like 4-hyd 47.9 69 0.0015 32.0 7.6 49 181-243 83-131 (266)
199 TIGR03234 OH-pyruv-isom hydrox 47.2 34 0.00073 33.6 5.2 57 183-243 87-145 (254)
200 cd06545 GH18_3CO4_chitinase Th 47.0 2.2E+02 0.0048 27.9 11.1 86 221-321 46-131 (253)
201 PRK12465 xylose isomerase; Pro 46.4 3.4E+02 0.0074 29.1 12.3 125 196-332 49-199 (445)
202 PF02156 Glyco_hydro_26: Glyco 46.3 3.2E+02 0.007 28.0 12.3 62 380-441 139-207 (311)
203 TIGR01232 lacD tagatose 1,6-di 45.9 27 0.00058 35.8 4.2 59 183-245 109-167 (325)
204 cd00019 AP2Ec AP endonuclease 45.8 29 0.00063 34.6 4.6 114 183-318 88-204 (279)
205 TIGR02171 Fb_sc_TIGR02171 Fibr 45.6 76 0.0017 37.1 8.2 72 217-299 804-876 (912)
206 PRK09997 hydroxypyruvate isome 45.5 3E+02 0.0065 26.9 13.9 124 183-326 42-173 (258)
207 PRK12399 tagatose 1,6-diphosph 45.3 34 0.00073 35.1 4.8 60 182-245 107-166 (324)
208 PRK09856 fructoselysine 3-epim 45.0 39 0.00084 33.5 5.3 59 183-243 93-151 (275)
209 TIGR02090 LEU1_arch isopropylm 44.6 47 0.001 34.9 6.0 60 182-242 73-133 (363)
210 PLN02746 hydroxymethylglutaryl 44.3 50 0.0011 34.5 6.1 60 182-242 123-183 (347)
211 PF10566 Glyco_hydro_97: Glyco 44.3 38 0.00083 34.1 5.0 50 183-244 109-158 (273)
212 COG5016 Pyruvate/oxaloacetate 43.5 48 0.001 35.1 5.6 54 175-242 93-146 (472)
213 PRK13209 L-xylulose 5-phosphat 43.4 2.7E+02 0.0057 27.6 11.2 122 186-329 63-186 (283)
214 cd03174 DRE_TIM_metallolyase D 43.1 30 0.00064 34.1 4.1 60 183-242 77-136 (265)
215 cd02872 GH18_chitolectin_chito 43.0 2.7E+02 0.0059 28.8 11.6 103 220-329 55-158 (362)
216 TIGR01370 cysRS possible cyste 43.0 3.9E+02 0.0086 27.5 13.4 69 264-332 142-214 (315)
217 PRK06256 biotin synthase; Vali 41.8 1.9E+02 0.0041 29.8 10.0 127 180-333 149-279 (336)
218 COG1441 MenC O-succinylbenzoat 41.7 24 0.00053 34.2 3.0 51 177-240 213-263 (321)
219 PRK11858 aksA trans-homoaconit 41.6 61 0.0013 34.2 6.4 58 183-241 78-136 (378)
220 TIGR02660 nifV_homocitr homoci 41.4 55 0.0012 34.4 6.0 59 182-241 74-133 (365)
221 PRK05692 hydroxymethylglutaryl 41.3 34 0.00074 34.7 4.2 60 182-242 81-141 (287)
222 cd00058 FGF Acidic and basic f 40.6 2.5E+02 0.0054 24.5 11.9 66 28-99 8-74 (123)
223 PRK14566 triosephosphate isome 40.5 3.9E+02 0.0085 26.7 11.9 53 183-243 85-137 (260)
224 PF10566 Glyco_hydro_97: Glyco 39.8 85 0.0019 31.6 6.7 62 183-244 35-96 (273)
225 COG2342 Predicted extracellula 39.6 4E+02 0.0087 27.0 11.1 67 260-330 117-191 (300)
226 KOG4518 Hydroxypyruvate isomer 39.5 3.5E+02 0.0076 25.9 10.6 125 184-326 20-174 (264)
227 cd06589 GH31 The enzymes of gl 39.4 3.1E+02 0.0068 27.1 10.9 59 183-243 27-88 (265)
228 PF05798 Phage_FRD3: Bacteriop 39.0 20 0.00043 27.6 1.6 26 492-517 8-33 (75)
229 TIGR02026 BchE magnesium-proto 38.5 83 0.0018 34.5 7.1 61 182-245 286-348 (497)
230 cd07945 DRE_TIM_CMS Leptospira 38.3 35 0.00076 34.4 3.8 61 182-243 76-137 (280)
231 KOG1643 Triosephosphate isomer 37.7 3.8E+02 0.0083 25.8 11.8 92 183-299 76-167 (247)
232 PF07287 DUF1446: Protein of u 37.6 1.1E+02 0.0023 32.2 7.3 53 215-289 52-104 (362)
233 COG1082 IolE Sugar phosphate i 37.5 2.5E+02 0.0054 27.4 9.9 125 184-329 49-176 (274)
234 PLN02923 xylose isomerase 37.3 5.6E+02 0.012 27.6 12.3 127 196-334 83-235 (478)
235 PRK09240 thiH thiamine biosynt 37.2 4.3E+02 0.0093 27.7 11.9 135 180-333 160-300 (371)
236 PF07977 FabA: FabA-like domai 37.0 22 0.00048 31.5 1.9 17 510-527 26-42 (138)
237 cd06419 GH25_muramidase_2 Unch 36.8 3.7E+02 0.008 25.4 10.7 115 184-330 20-134 (190)
238 cd00419 Ferrochelatase_C Ferro 36.6 1.7E+02 0.0038 25.9 7.6 83 233-333 17-101 (135)
239 PF04273 DUF442: Putative phos 36.3 63 0.0014 27.7 4.5 47 180-237 14-60 (110)
240 PLN02429 triosephosphate isome 36.1 5E+02 0.011 26.7 11.8 53 183-243 137-189 (315)
241 smart00518 AP2Ec AP endonuclea 35.7 4.3E+02 0.0094 25.9 12.0 62 217-294 80-141 (273)
242 cd07938 DRE_TIM_HMGL 3-hydroxy 35.7 49 0.0011 33.3 4.3 60 182-242 75-135 (274)
243 PF00652 Ricin_B_lectin: Ricin 35.7 1.7E+02 0.0036 24.4 7.3 94 18-124 3-104 (124)
244 smart00472 MIR Domain in ryano 35.4 32 0.0007 25.2 2.3 22 13-34 3-24 (57)
245 PRK00979 tetrahydromethanopter 34.8 2.9E+02 0.0064 28.3 9.7 87 182-298 135-231 (308)
246 TIGR03234 OH-pyruv-isom hydrox 34.8 4.3E+02 0.0094 25.6 13.3 129 183-329 41-176 (254)
247 COG3661 AguA Alpha-glucuronida 34.7 4.9E+02 0.011 28.1 11.3 99 183-295 186-287 (684)
248 TIGR03217 4OH_2_O_val_ald 4-hy 34.6 92 0.002 32.3 6.3 47 182-242 89-135 (333)
249 cd06413 GH25_muramidase_1 Unch 34.5 3.9E+02 0.0084 25.0 11.3 117 184-330 15-131 (191)
250 PRK08195 4-hyroxy-2-oxovalerat 34.4 89 0.0019 32.5 6.1 48 182-243 90-137 (337)
251 PRK12858 tagatose 1,6-diphosph 34.4 73 0.0016 33.2 5.4 57 184-244 110-166 (340)
252 smart00481 POLIIIAc DNA polyme 34.2 1.1E+02 0.0025 23.0 5.3 44 183-241 18-61 (67)
253 TIGR02351 thiH thiazole biosyn 33.3 3.9E+02 0.0085 28.0 10.8 132 180-333 159-299 (366)
254 PF00728 Glyco_hydro_20: Glyco 32.9 99 0.0021 31.9 6.3 145 182-333 20-219 (351)
255 PRK05474 xylose isomerase; Pro 32.7 6.6E+02 0.014 27.1 12.2 125 196-332 39-189 (437)
256 cd06569 GH20_Sm-chitobiase-lik 32.7 89 0.0019 33.8 6.0 23 219-241 95-117 (445)
257 KOG0564 5,10-methylenetetrahyd 32.5 57 0.0012 35.3 4.3 58 219-286 90-148 (590)
258 PRK14042 pyruvate carboxylase 31.7 2E+02 0.0043 32.5 8.6 52 175-240 91-142 (596)
259 PRK12331 oxaloacetate decarbox 31.5 1E+02 0.0022 33.5 6.1 51 177-241 93-143 (448)
260 TIGR01750 fabZ beta-hydroxyacy 31.5 33 0.00071 30.4 2.1 31 492-527 15-45 (140)
261 TIGR01305 GMP_reduct_1 guanosi 31.5 1.3E+02 0.0029 31.2 6.6 71 169-241 140-219 (343)
262 cd02877 GH18_hevamine_XipI_cla 31.4 4.2E+02 0.0092 26.7 10.3 25 220-244 58-82 (280)
263 PF07071 DUF1341: Protein of u 31.4 1.4E+02 0.0029 28.7 6.1 43 182-237 137-180 (218)
264 COG1137 YhbG ABC-type (unclass 31.2 5E+02 0.011 25.3 11.7 150 64-244 21-199 (243)
265 smart00729 Elp3 Elongator prot 30.9 2.2E+02 0.0047 26.1 7.8 57 180-239 97-155 (216)
266 PRK00278 trpC indole-3-glycero 30.8 1.4E+02 0.003 29.7 6.6 47 183-243 123-169 (260)
267 PLN02591 tryptophan synthase 30.8 3E+02 0.0065 27.3 8.9 43 183-241 96-138 (250)
268 PRK14334 (dimethylallyl)adenos 30.8 6.4E+02 0.014 27.1 12.3 55 179-238 230-289 (440)
269 PF00218 IGPS: Indole-3-glycer 30.7 1.5E+02 0.0033 29.5 6.8 49 181-243 119-167 (254)
270 TIGR02630 xylose_isom_A xylose 30.5 7.1E+02 0.015 26.8 12.2 125 196-332 38-188 (434)
271 PRK10673 acyl-CoA esterase; Pr 30.3 1.3E+02 0.0028 28.7 6.3 57 278-334 35-91 (255)
272 PF04343 DUF488: Protein of un 30.3 76 0.0016 27.5 4.1 27 223-249 2-28 (122)
273 cd07941 DRE_TIM_LeuA3 Desulfob 30.2 68 0.0015 32.2 4.3 57 183-240 81-138 (273)
274 PF03498 CDtoxinA: Cytolethal 29.5 1.4E+02 0.0031 27.2 5.8 63 15-80 49-112 (150)
275 TIGR02666 moaA molybdenum cofa 29.3 1.6E+02 0.0035 30.2 7.1 58 183-243 102-162 (334)
276 PRK07535 methyltetrahydrofolat 29.2 5.8E+02 0.013 25.4 10.9 93 183-298 106-201 (261)
277 PRK13397 3-deoxy-7-phosphohept 29.2 1.7E+02 0.0037 29.1 6.8 55 184-243 33-88 (250)
278 PLN02449 ferrochelatase 28.9 8.1E+02 0.017 26.9 12.6 142 175-334 187-363 (485)
279 TIGR03849 arch_ComA phosphosul 28.6 1.6E+02 0.0035 29.0 6.4 49 183-243 74-122 (237)
280 TIGR03128 RuMP_HxlA 3-hexulose 28.2 1.5E+02 0.0033 27.9 6.3 44 185-243 68-111 (206)
281 cd00842 MPP_ASMase acid sphing 28.2 1.3E+02 0.0027 30.3 6.0 77 171-247 138-226 (296)
282 COG1306 Uncharacterized conser 27.9 88 0.0019 31.8 4.5 58 183-241 80-144 (400)
283 COG3684 LacD Tagatose-1,6-bisp 27.2 75 0.0016 31.6 3.8 58 183-245 114-171 (306)
284 PF09270 BTD: Beta-trefoil DNA 27.2 1.2E+02 0.0025 28.0 4.8 50 15-69 4-66 (158)
285 cd07940 DRE_TIM_IPMS 2-isoprop 27.0 1.4E+02 0.0029 29.8 5.8 59 182-241 71-134 (268)
286 cd06542 GH18_EndoS-like Endo-b 26.6 6E+02 0.013 24.7 12.4 56 219-283 49-104 (255)
287 TIGR02631 xylA_Arthro xylose i 26.5 6.1E+02 0.013 26.8 10.9 92 218-323 112-206 (382)
288 cd07947 DRE_TIM_Re_CS Clostrid 26.5 79 0.0017 31.9 4.0 61 181-242 75-136 (279)
289 PLN02389 biotin synthase 25.7 6.3E+02 0.014 26.7 10.8 129 180-333 175-307 (379)
290 CHL00200 trpA tryptophan synth 25.6 4.1E+02 0.0088 26.6 8.9 124 183-356 109-234 (263)
291 smart00791 Agglutinin Amaranth 25.3 5E+02 0.011 23.3 9.2 75 16-94 50-131 (139)
292 PF02879 PGM_PMM_II: Phosphogl 25.3 96 0.0021 25.8 3.8 83 219-330 3-91 (104)
293 COG0134 TrpC Indole-3-glycerol 25.3 66 0.0014 32.0 3.1 49 181-243 117-165 (254)
294 COG2100 Predicted Fe-S oxidore 25.3 2.8E+02 0.0061 28.7 7.5 131 180-334 201-341 (414)
295 smart00442 FGF Acidic and basi 25.2 4.7E+02 0.01 22.9 12.6 75 18-99 3-78 (126)
296 COG2115 XylA Xylose isomerase 25.1 4.6E+02 0.01 27.1 8.9 104 219-334 80-194 (438)
297 cd06525 GH25_Lyc-like Lyc mura 24.8 5.6E+02 0.012 23.7 11.1 113 184-330 12-124 (184)
298 PRK04424 fatty acid biosynthes 24.7 38 0.00082 31.9 1.3 18 506-524 81-98 (185)
299 cd01289 FabA_like Domain of un 24.5 58 0.0013 29.0 2.4 34 491-530 12-45 (138)
300 cd06601 GH31_lyase_GLase GLase 24.4 1E+02 0.0022 32.0 4.5 107 184-299 28-136 (332)
301 PF02449 Glyco_hydro_42: Beta- 24.3 1.5E+02 0.0032 31.1 5.8 25 305-329 209-233 (374)
302 COG0149 TpiA Triosephosphate i 24.2 7.2E+02 0.016 24.7 12.5 53 183-243 78-130 (251)
303 PRK13957 indole-3-glycerol-pho 24.2 1.9E+02 0.0041 28.7 6.1 49 181-243 112-160 (247)
304 PRK09613 thiH thiamine biosynt 24.1 7.1E+02 0.015 27.2 11.0 131 181-332 178-318 (469)
305 PRK09282 pyruvate carboxylase 24.0 1.6E+02 0.0035 33.1 6.3 53 175-241 91-143 (592)
306 TIGR02109 PQQ_syn_pqqE coenzym 23.8 1E+02 0.0022 32.1 4.4 59 180-241 92-152 (358)
307 cd07943 DRE_TIM_HOA 4-hydroxy- 23.7 2E+02 0.0044 28.4 6.4 47 182-242 87-133 (263)
308 PRK13125 trpA tryptophan synth 23.6 2.2E+02 0.0048 27.9 6.5 128 183-358 91-219 (244)
309 PF00682 HMGL-like: HMGL-like 23.6 1.4E+02 0.003 28.9 5.1 59 183-242 66-129 (237)
310 PF02679 ComA: (2R)-phospho-3- 23.5 1.7E+02 0.0038 28.9 5.6 50 182-243 86-135 (244)
311 PF01341 Glyco_hydro_6: Glycos 23.4 4E+02 0.0086 27.2 8.4 102 219-331 45-163 (298)
312 PRK12330 oxaloacetate decarbox 23.4 1.7E+02 0.0037 32.2 6.1 53 175-241 92-144 (499)
313 cd05738 Ig2_RPTP_IIa_LAR_like 23.3 70 0.0015 24.7 2.4 27 16-42 36-66 (74)
314 PRK13398 3-deoxy-7-phosphohept 23.2 2.7E+02 0.006 27.8 7.2 57 183-244 44-101 (266)
315 PF00332 Glyco_hydro_17: Glyco 23.2 5.3E+02 0.011 26.4 9.4 106 183-324 16-121 (310)
316 cd00161 RICIN Ricin-type beta- 23.1 4.1E+02 0.0089 21.5 9.1 71 27-103 9-85 (124)
317 PRK08508 biotin synthase; Prov 23.0 7.7E+02 0.017 24.6 11.6 126 180-331 99-226 (279)
318 PRK09389 (R)-citramalate synth 23.0 1E+02 0.0022 33.9 4.3 59 183-242 76-135 (488)
319 PRK12581 oxaloacetate decarbox 22.9 2E+02 0.0043 31.4 6.4 53 175-241 100-152 (468)
320 TIGR00419 tim triosephosphate 22.8 6.8E+02 0.015 24.0 12.7 47 183-241 71-117 (205)
321 TIGR02867 spore_II_P stage II 22.5 2.1E+02 0.0045 27.3 5.8 54 184-244 38-92 (196)
322 COG2945 Predicted hydrolase of 22.1 1.8E+02 0.0038 27.9 5.1 55 175-233 42-98 (210)
323 PF02310 B12-binding: B12 bind 22.1 4.7E+02 0.01 21.8 9.3 40 285-333 51-90 (121)
324 TIGR01108 oadA oxaloacetate de 22.1 1.8E+02 0.0039 32.7 6.1 53 175-241 86-138 (582)
325 PRK14040 oxaloacetate decarbox 21.9 1.7E+02 0.0038 32.9 6.0 49 177-239 94-142 (593)
326 COG1692 Calcineurin-like phosp 21.8 1.8E+02 0.0039 28.8 5.2 26 218-243 127-152 (266)
327 PF01791 DeoC: DeoC/LacD famil 21.7 45 0.00098 32.5 1.2 53 183-240 79-131 (236)
328 TIGR03581 EF_0839 conserved hy 21.6 2E+02 0.0043 28.0 5.3 42 182-236 137-179 (236)
329 COG0084 TatD Mg-dependent DNas 21.4 7.3E+02 0.016 24.7 9.7 107 314-435 22-131 (256)
330 cd01299 Met_dep_hydrolase_A Me 21.4 3E+02 0.0065 28.0 7.3 56 183-239 123-178 (342)
331 cd03751 proteasome_alpha_type_ 21.3 78 0.0017 30.4 2.8 52 136-187 135-186 (212)
332 PRK05301 pyrroloquinoline quin 21.3 1E+02 0.0022 32.3 3.9 59 180-241 101-161 (378)
333 PLN02623 pyruvate kinase 21.2 99 0.0021 34.6 3.8 52 183-244 125-179 (581)
334 KOG1446 Histone H3 (Lys4) meth 21.1 5.7E+02 0.012 26.2 8.7 94 27-122 151-249 (311)
335 PF00232 Glyco_hydro_1: Glycos 21.0 69 0.0015 34.7 2.6 49 391-440 354-413 (455)
336 PRK10425 DNase TatD; Provision 20.9 8.2E+02 0.018 24.2 10.5 45 393-437 85-129 (258)
337 PF14881 Tubulin_3: Tubulin do 20.8 5E+02 0.011 24.3 8.0 53 219-293 59-113 (180)
338 TIGR03551 F420_cofH 7,8-dideme 20.7 5.8E+02 0.013 26.3 9.3 132 181-333 139-279 (343)
339 TIGR03279 cyano_FeS_chp putati 20.6 2.7E+02 0.0058 30.0 6.7 96 179-294 124-220 (433)
340 PF08821 CGGC: CGGC domain; I 20.3 4.2E+02 0.009 22.6 6.7 52 183-242 55-107 (107)
341 COG0641 AslB Arylsulfatase reg 20.2 1E+03 0.022 25.1 13.6 119 180-323 101-228 (378)
342 PRK15452 putative protease; Pr 20.1 7.3E+02 0.016 26.8 10.1 58 183-245 13-70 (443)
343 PF13378 MR_MLE_C: Enolase C-t 20.0 2.3E+02 0.0051 23.6 5.2 46 181-239 5-51 (111)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=100.00 E-value=8.6e-32 Score=270.70 Aligned_cols=252 Identities=27% Similarity=0.402 Sum_probs=178.8
Q ss_pred hhCc-cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 046395 176 HWKS-YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHS 254 (535)
Q Consensus 176 hw~~-~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~s 254 (535)
||.+ ++++++|+.||++|+|+|||||.|....++.++..+.+..++.||++|++|.++||+||||+|..|+...+
T Consensus 16 ~w~~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~---- 91 (281)
T PF00150_consen 16 HWYNPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANG---- 91 (281)
T ss_dssp TTSGGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSS----
T ss_pred ccCCCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccc----
Confidence 3543 37899999999999999999999866665666555778899999999999999999999999987542111
Q ss_pred CCCCCCCCCC-hHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC-------hHHHHHHHHHHHHHHHhcCCCcE
Q 046395 255 GSRDGFQEWS-DSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLK-------LDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 255 g~~~~~~~W~-~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~-------~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
+..... ....+.+.++|+.|++||+++|.|++|||+|||...... ...+.+++++++++||+++|+++
T Consensus 92 ----~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 92 ----GDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp ----TSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ----ccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 111111 356677889999999999999999999999999975322 27899999999999999999999
Q ss_pred EEEcC-CCCCChhh-hhccc-CCCCcEEEEEeecCcCCCcccCC-ChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCC
Q 046395 327 VILSN-RLGGEWSE-LLSFA-SNLSRVVIDVHFYNLFWDNFNKM-SVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSC 402 (535)
Q Consensus 327 ii~~~-~~g~~~~~-~~~~~-~~~~n~v~d~H~Y~~~~~~~~~~-~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~ 402 (535)
|++++ .|+.+... ....+ ....++++++|.|.++....... ........+.......+.... ..+.|++|||||.
T Consensus 168 i~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~pv~~gE~G~ 246 (281)
T PF00150_consen 168 IIVGGGGWGADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWAK-KNGKPVVVGEFGW 246 (281)
T ss_dssp EEEEEHHHHTBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHHH-HTTSEEEEEEEES
T ss_pred eecCCCccccccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHHH-HcCCeEEEeCcCC
Confidence 99876 34444333 22332 24789999999999754211110 111222233333333333343 3455799999998
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHhhCCcceEEEeeeeC
Q 046395 403 EWEAEGASKRDYQRFAEAQLDVYGRATFGWAYWAYKFA 440 (535)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ql~~~~~~~~Gw~~W~~k~~ 440 (535)
...... ...++..+.++.+++.++||++|+|+.+
T Consensus 247 ~~~~~~----~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 280 (281)
T PF00150_consen 247 SNNDGN----GSTDYADAWLDYLEQNGIGWIYWSWKPN 280 (281)
T ss_dssp STTTSC----HHHHHHHHHHHHHHHTTCEEEECEESSS
T ss_pred cCCCCC----cCHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 632111 2334444457888889999999999975
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=230.29 Aligned_cols=283 Identities=25% Similarity=0.445 Sum_probs=188.4
Q ss_pred cccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCC-CCCCcc--chHHHHHHHHHHHH
Q 046395 155 HGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKP-PKPFVG--GSLQALDNAFRWAQ 231 (535)
Q Consensus 155 ~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~-~~~~~~--~~l~~ld~~i~~a~ 231 (535)
.++...+..+|...+...++.||.++++++++..||++|||+||||++||.+ .+.. ..|+.. ..+..|+++|++|.
T Consensus 48 ~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~ 126 (407)
T COG2730 48 VGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAK 126 (407)
T ss_pred ecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHH
Confidence 3455667777877888899999999999999999999999999999999986 3322 233433 56779999999999
Q ss_pred HcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHH
Q 046395 232 KYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYY 311 (535)
Q Consensus 232 ~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~ 311 (535)
++||+|+||+|++|+++++.++++....+.. ..++.+++.+.|++|+.||++.+.|++++++|||+. -...+.|....
T Consensus 127 ~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~~~~ 204 (407)
T COG2730 127 KLGIYVLIDLHGYPGGNNGHEHSGYTSDYKE-ENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWNGGD 204 (407)
T ss_pred hcCeeEEEEecccCCCCCCcCcccccccccc-cchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCccccccch
Confidence 9999999999999999999999886555443 567889999999999999999999999999999995 11122333333
Q ss_pred HHHHHHHH-hcCCCc---EEEEcCC-CCC-----------Chh----hhhccc--CC---CCcEEEEEeecCcCC---Cc
Q 046395 312 KAGYDTVR-KYSSSA---YVILSNR-LGG-----------EWS----ELLSFA--SN---LSRVVIDVHFYNLFW---DN 363 (535)
Q Consensus 312 ~~~~~aIR-~~~p~~---~ii~~~~-~g~-----------~~~----~~~~~~--~~---~~n~v~d~H~Y~~~~---~~ 363 (535)
.++++.|| ++...+ +|.+++. ++. .+. .....+ .. ....+++.|.|.... +.
T Consensus 205 ~~A~~~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~ 284 (407)
T COG2730 205 DEAYDVVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNGGS 284 (407)
T ss_pred HHHHHHHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcCCC
Confidence 55666663 444443 4444432 111 000 000001 12 234456666664321 11
Q ss_pred ccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCCCcC-C----CCCCHHHHHHHHHHHHHHHhhCCcceEEEeee
Q 046395 364 FNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCEWE-A----EGASKRDYQRFAEAQLDVYGRATFGWAYWAYK 438 (535)
Q Consensus 364 ~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~~~-~----~~~~~~~~~~~~~~ql~~~~~~~~Gw~~W~~k 438 (535)
+............+..+...+....+..+.++++||||...+ . .....+..+.+++.+.+++.. ..+|.+|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ge~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~ 363 (407)
T COG2730 285 WTVGGEFDLAETDCAIWLNYVGHGARKNGYPTVIGEFGGNYNANNPNPQDERKDNVKVYLENQLDVFDT-TTYWINNPWS 363 (407)
T ss_pred CCccCCcccccccceeeecceeecccccceeeeeccccCccccCCCCccchhhHHHHHHhhhhhhhccc-eeEEEeeccc
Confidence 110000111111111122223333335677799999998774 2 123456667888999999986 7889999988
Q ss_pred eCC
Q 046395 439 FAE 441 (535)
Q Consensus 439 ~~~ 441 (535)
...
T Consensus 364 ~~~ 366 (407)
T COG2730 364 GGN 366 (407)
T ss_pred CCC
Confidence 854
No 3
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.73 E-value=6.6e-17 Score=142.10 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=96.6
Q ss_pred ceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEEeeCCcEEEeecCCCeEEEeccCCCCCCc
Q 046395 18 TQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFRLSNKQFIGLENQGNKLVAVSATEKFPEP 97 (535)
Q Consensus 18 ~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e~ 97 (535)
-||+|||. +||||||+.+| ..|.|||..+ ++||+|+|...+++++.||+.||+||+++. +|.|.|++. |+.+|+
T Consensus 2 p~v~Lrs~-~gkyl~~~~~g-~~v~a~~~~~--~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~-~g~l~~~~~-~~~~e~ 75 (119)
T cd00257 2 PQVVLRSV-NGRYLSAEAGG-DKVDANRDSL--KGDETFTLEFDNTGKYALRSHDGKYLSADS-DGGVQLEGH-PNADCR 75 (119)
T ss_pred cEEEEEEc-CCCEEEEeccC-CEEEEcCccC--CCceEEEEEECCCCeEEEEECCCcEEEEEC-CCCEEecCC-CCCCcE
Confidence 48999999 99999999988 5999999999 999999999998999999999999999987 778999999 999999
Q ss_pred eEEEecCCCCceeEEEecCCceEEEecccEEecCCC
Q 046395 98 FQITRKNGEPHRVRFRASNGYFLQAKSEMQVTADYK 133 (535)
Q Consensus 98 f~~~~~~~~~~~v~I~~~nG~flq~~~~~~v~a~~~ 133 (535)
|++...++ +.+.|++.||+||.+.....+.+...
T Consensus 76 F~~e~~~~--g~~al~~~~G~yl~~~~~g~l~~~~~ 109 (119)
T cd00257 76 FTLEFHGD--GKWALRAENGRYLGGDGSGTLKASSE 109 (119)
T ss_pred EEEEECCC--CeEEEEcCCCCEEeecCCCeEEEecC
Confidence 99998753 46899999999999986666676654
No 4
>TIGR03356 BGL beta-galactosidase.
Probab=99.68 E-value=3.4e-16 Score=166.53 Aligned_cols=181 Identities=22% Similarity=0.295 Sum_probs=131.7
Q ss_pred EEecCCCCCCCc--ccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEEeCCccc
Q 046395 127 QVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVRIPVGWW 204 (535)
Q Consensus 127 ~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VRipv~~w 204 (535)
.-+|++|.||+| +++.||+|+..... . + .+......+.|. +||+.| ++|+++||++|+|++|++|.|
T Consensus 9 ~atsa~Q~EG~~~~~gkg~s~wd~~~~~-~-~--~~~~~~~~~~a~----d~y~~y--~eDi~l~~~~G~~~~R~si~W- 77 (427)
T TIGR03356 9 VATASYQIEGAVNEDGRGPSIWDTFSHT-P-G--KVKDGDTGDVAC----DHYHRY--EEDVALMKELGVDAYRFSIAW- 77 (427)
T ss_pred eechHHhhCCCcCCCCCccchhheeccC-C-C--cccCCCCCCccc----cHHHhH--HHHHHHHHHcCCCeEEcccch-
Confidence 457889999999 44789999874321 0 0 111222334566 889888 899999999999999999986
Q ss_pred cccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHhC
Q 046395 205 IAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWS-DSDIQETVAIIDFLASRYA 283 (535)
Q Consensus 205 ~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~-~~~~~~~~~~~~~la~ry~ 283 (535)
.++.|...+.++++.+++++++|+.|.++||.+||+||+. +.+........|. ++..+.|+++++.+++||+
T Consensus 78 sri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf-------d~P~~l~~~gGw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 78 PRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHW-------DLPQALEDRGGWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred hhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccC-------CccHHHHhcCCCCChHHHHHHHHHHHHHHHHhC
Confidence 7788873235888999999999999999999999999974 2222111224565 7889999999999999999
Q ss_pred CCCcEEEEEeecCCCCC------------CCC--h------HHHHHHHHHHHHHHHhcCCCcEE
Q 046395 284 DHPSLVAIELMNEPKAP------------DLK--L------DSLKTYYKAGYDTVRKYSSSAYV 327 (535)
Q Consensus 284 ~~p~V~~~el~NEP~~~------------~~~--~------~~~~~~~~~~~~aIR~~~p~~~i 327 (535)
+ .|-.|+++|||... ... . ..+.....++++++|+..|+..|
T Consensus 151 d--~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~I 212 (427)
T TIGR03356 151 D--RVKHWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQV 212 (427)
T ss_pred C--cCCEEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 9 67779999999742 101 0 12223345667788887776443
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.9e-16 Score=162.74 Aligned_cols=156 Identities=21% Similarity=0.346 Sum_probs=126.4
Q ss_pred cEEecCCCCCCCcc--cCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEEeCCcc
Q 046395 126 MQVTADYKGPSTWE--ENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVRIPVGW 203 (535)
Q Consensus 126 ~~v~a~~~~~~~w~--~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VRipv~~ 203 (535)
...+|++|.||+|. .+.+|+|+........+ .+..+++++.|. +||+.| ++|+++||++|+|+.|++|.|
T Consensus 11 G~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~--~~~~~~~~~~a~----d~YhrY--keDi~L~~emG~~~~R~SI~W 82 (460)
T COG2723 11 GGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPG--RLVSGDPPEEAS----DFYHRY--KEDIALAKEMGLNAFRTSIEW 82 (460)
T ss_pred ecccccccccCCcCCCCCCCeeeeeeeccccCC--cccCCCCCcccc----chhhhh--HHHHHHHHHcCCCEEEeeeeE
Confidence 35678999999994 38889998765432111 234456777888 999999 999999999999999999997
Q ss_pred ccccCCCCCC-CCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC-CCCC-hHHHHHHHHHHHHHHH
Q 046395 204 WIAYDPKPPK-PFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF-QEWS-DSDIQETVAIIDFLAS 280 (535)
Q Consensus 204 w~~~~p~~~~-~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~-~~W~-~~~~~~~~~~~~~la~ 280 (535)
.++-|++.+ ..++..++.++++|+.|.++||.++|+|||. +.+-..... .+|. ++.++.|+++.+.+++
T Consensus 83 -sRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hf-------d~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~ 154 (460)
T COG2723 83 -SRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHF-------DLPLWLQKPYGGWENRETVDAFARYAATVFE 154 (460)
T ss_pred -EEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeccc-------CCcHHHhhccCCccCHHHHHHHHHHHHHHHH
Confidence 677776544 5789999999999999999999999999985 222222222 4676 7899999999999999
Q ss_pred HhCCCCcEEEEEeecCCCC
Q 046395 281 RYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 281 ry~~~p~V~~~el~NEP~~ 299 (535)
||+| .|-.|-++|||..
T Consensus 155 ~f~d--kVk~W~TFNE~n~ 171 (460)
T COG2723 155 RFGD--KVKYWFTFNEPNV 171 (460)
T ss_pred HhcC--cceEEEEecchhh
Confidence 9999 8999999999986
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.58 E-value=8e-15 Score=157.73 Aligned_cols=149 Identities=19% Similarity=0.321 Sum_probs=119.6
Q ss_pred cEEecCCCCCCCc--ccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEEeCCcc
Q 046395 126 MQVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVRIPVGW 203 (535)
Q Consensus 126 ~~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VRipv~~ 203 (535)
..-||++|.||+| +++.||+|+..... . +. ...+.|. +||+.| ++|+++||++|+|+.|++|.|
T Consensus 12 G~Atsa~QiEG~~~~~Gkg~siwD~~~~~-~-~~------~~~~~a~----d~Y~ry--~eDi~L~~~lG~~~yRfSIsW 77 (469)
T PRK13511 12 GGATAAYQAEGATKTDGKGPVAWDKYLEE-N-YW------FTPDPAS----DFYHRY--PEDLKLAEEFGVNGIRISIAW 77 (469)
T ss_pred EeechHhhhcCCcCCCCCccchhhccccc-C-CC------CCCCccc----chhhhh--HHHHHHHHHhCCCEEEeeccH
Confidence 3567899999999 45889999864311 1 00 1234566 899999 999999999999999999997
Q ss_pred ccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHh
Q 046395 204 WIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWS-DSDIQETVAIIDFLASRY 282 (535)
Q Consensus 204 w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~-~~~~~~~~~~~~~la~ry 282 (535)
.++.|+..+.++++.+++++++|+.|.++||.++|+|||. +.+........|. ++..+.|.++.+.++++|
T Consensus 78 -sRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~-------dlP~~L~~~GGW~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 78 -SRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHF-------DTPEALHSNGDWLNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred -hhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCC-------CCcHHHHHcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7888864345889999999999999999999999999984 3333222335676 889999999999999999
Q ss_pred CCCCcEEEEEeecCCCC
Q 046395 283 ADHPSLVAIELMNEPKA 299 (535)
Q Consensus 283 ~~~p~V~~~el~NEP~~ 299 (535)
+| |--|-++|||..
T Consensus 150 gd---Vk~W~T~NEP~~ 163 (469)
T PRK13511 150 PE---VKYWTTFNEIGP 163 (469)
T ss_pred CC---CCEEEEccchhh
Confidence 99 777999999974
No 7
>PLN02849 beta-glucosidase
Probab=99.58 E-value=3.8e-15 Score=160.67 Aligned_cols=154 Identities=23% Similarity=0.327 Sum_probs=123.8
Q ss_pred ceEEEecccEEecCCCCCCCc--ccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCC
Q 046395 118 YFLQAKSEMQVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLN 195 (535)
Q Consensus 118 ~flq~~~~~~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N 195 (535)
.|| -..-+|++|.||+| +++.||+|+..... . .....+.|. +||+.| ++|+++||++|+|
T Consensus 33 dFl----wG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~-~-------~~~~~~~a~----D~YhrY--~eDI~Lm~~lG~~ 94 (503)
T PLN02849 33 GFV----FGAGTSAYQWEGAFDEDGRKPSVWDTFLHS-R-------NMSNGDIAC----DGYHKY--KEDVKLMVETGLD 94 (503)
T ss_pred CCE----EEeechhhhhcCCcCCCCCcCcceeeeecc-C-------CCCCCCccc----cHHHhH--HHHHHHHHHcCCC
Confidence 566 33667899999999 45789999874321 1 112234465 899998 9999999999999
Q ss_pred EEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCC-CCCCC-hHHHHHHHH
Q 046395 196 AVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDG-FQEWS-DSDIQETVA 273 (535)
Q Consensus 196 ~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~-~~~W~-~~~~~~~~~ 273 (535)
+.|++|.| .++.|+..++++++.+++++++|+.|.++||.++|+|||. +.+..... +..|. ++..+.|.+
T Consensus 95 aYRfSIsW-sRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~-------dlP~~L~~~yGGW~nr~~v~~F~~ 166 (503)
T PLN02849 95 AFRFSISW-SRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHY-------DHPQYLEDDYGGWINRRIIKDFTA 166 (503)
T ss_pred eEEEeccH-HhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCC-------CCcHHHHHhcCCcCCchHHHHHHH
Confidence 99999997 7888875445899999999999999999999999999984 33332222 35676 789999999
Q ss_pred HHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 274 IIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 274 ~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
+.+.++++|+| .|-.|-++|||..
T Consensus 167 YA~~~f~~fgD--rVk~WiT~NEP~~ 190 (503)
T PLN02849 167 YADVCFREFGN--HVKFWTTINEANI 190 (503)
T ss_pred HHHHHHHHhcC--cCCEEEEecchhh
Confidence 99999999999 8888999999984
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.58 E-value=1.1e-14 Score=156.21 Aligned_cols=149 Identities=16% Similarity=0.267 Sum_probs=119.4
Q ss_pred cEEecCCCCCCCc--ccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEEeCCcc
Q 046395 126 MQVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVRIPVGW 203 (535)
Q Consensus 126 ~~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VRipv~~ 203 (535)
..-+|++|.||+| +++.||+|+..... . +. ...+.|. +||+.| ++|+++||++|+|+.|++|.|
T Consensus 11 G~AtsA~QvEG~~~~~Gkg~siwD~~~~~-~-~~------~~~~~a~----d~yhry--~eDi~L~~~lG~~~yRfSIsW 76 (467)
T TIGR01233 11 GGATAAYQAEGATHTDGKGPVAWDKYLED-N-YW------YTAEPAS----DFYHKY--PVDLELAEEYGVNGIRISIAW 76 (467)
T ss_pred eeechhhhcCCCcCCCCCcCchhhccccC-C-CC------CCCCccC----chhhhH--HHHHHHHHHcCCCEEEEecch
Confidence 3567899999999 45889999863311 1 00 1234555 899999 999999999999999999997
Q ss_pred ccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHh
Q 046395 204 WIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWS-DSDIQETVAIIDFLASRY 282 (535)
Q Consensus 204 w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~-~~~~~~~~~~~~~la~ry 282 (535)
.++.|...+.++++.+++++++|+.|.++||.++|+|||. +.+........|. ++.++.|.++.+.++++|
T Consensus 77 -sRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~-------dlP~~L~~~GGW~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 77 -SRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHF-------DTPEALHSNGDFLNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred -hhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCC-------CCcHHHHHcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7788864345899999999999999999999999999984 3333223345676 899999999999999999
Q ss_pred CCCCcEEEEEeecCCCC
Q 046395 283 ADHPSLVAIELMNEPKA 299 (535)
Q Consensus 283 ~~~p~V~~~el~NEP~~ 299 (535)
++ |--|-++|||..
T Consensus 149 gd---Vk~WiT~NEP~~ 162 (467)
T TIGR01233 149 PE---VNYWTTFNEIGP 162 (467)
T ss_pred CC---CCEEEEecchhh
Confidence 84 778999999974
No 9
>PLN02814 beta-glucosidase
Probab=99.57 E-value=4.9e-15 Score=159.91 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=123.3
Q ss_pred ceEEEecccEEecCCCCCCCc--ccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCC
Q 046395 118 YFLQAKSEMQVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLN 195 (535)
Q Consensus 118 ~flq~~~~~~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N 195 (535)
.|| -..-||++|.||+| +++.||+|+..... ......+.|. +||+.| ++|+++||++|+|
T Consensus 31 ~Fl----wG~AtaA~QiEGa~~~~gkg~siwD~~~~~--------~~~~~~~~a~----D~Yhry--~EDI~L~k~lG~~ 92 (504)
T PLN02814 31 DFL----FGAATSAYQWEGAVDEDGRTPSVWDTTSHC--------YNGGNGDIAS----DGYHKY--KEDVKLMAEMGLE 92 (504)
T ss_pred CCE----EeeechhhhhcCCcCCCCCccchhheeeec--------cCCCCCCccc----cHHHhh--HHHHHHHHHcCCC
Confidence 566 33567899999998 45789999874310 0112334566 899998 9999999999999
Q ss_pred EEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCC-CCCCC-hHHHHHHHH
Q 046395 196 AVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDG-FQEWS-DSDIQETVA 273 (535)
Q Consensus 196 ~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~-~~~W~-~~~~~~~~~ 273 (535)
+.|++|.| .++.|+..+.++++.+++++++|+.|.++||.++|+|||. +.+..... +..|. ++..+.|.+
T Consensus 93 ayRfSIsW-sRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~-------dlP~~L~~~yGGW~n~~~i~~F~~ 164 (504)
T PLN02814 93 SFRFSISW-SRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHY-------DLPQSLEDEYGGWINRKIIEDFTA 164 (504)
T ss_pred EEEEeccH-hhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCC-------CCCHHHHHhcCCcCChhHHHHHHH
Confidence 99999997 7788864345899999999999999999999999999984 33322222 35676 789999999
Q ss_pred HHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 274 IIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 274 ~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
+.+.++++|+| .|-.|-++|||..
T Consensus 165 YA~~~f~~fgd--rVk~WiT~NEP~~ 188 (504)
T PLN02814 165 FADVCFREFGE--DVKLWTTINEATI 188 (504)
T ss_pred HHHHHHHHhCC--cCCEEEeccccch
Confidence 99999999999 8888999999984
No 10
>PLN02998 beta-glucosidase
Probab=99.57 E-value=4.9e-15 Score=159.65 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=123.3
Q ss_pred ceEEEecccEEecCCCCCCCc--ccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCC
Q 046395 118 YFLQAKSEMQVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLN 195 (535)
Q Consensus 118 ~flq~~~~~~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N 195 (535)
.|| -..-+|++|.||+| +++.||+|+...... . ......+.|. +||+.| ++|+++||++|+|
T Consensus 34 ~Fl----wG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~----~--~~~~~~~~a~----D~Yhry--~EDi~lmk~lG~~ 97 (497)
T PLN02998 34 GFV----FGSGTSAYQVEGAADEDGRTPSIWDVFAHAG----H--SGVAAGNVAC----DQYHKY--KEDVKLMADMGLE 97 (497)
T ss_pred CCE----EeeechHHHhCCCcCCCCCccchhhcccccC----c--CCCCCCcccc----cHHHhh--HHHHHHHHHcCCC
Confidence 566 33667899999999 457899998743211 1 0001234466 899999 9999999999999
Q ss_pred EEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCC-CCCCC-hHHHHHHHH
Q 046395 196 AVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDG-FQEWS-DSDIQETVA 273 (535)
Q Consensus 196 ~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~-~~~W~-~~~~~~~~~ 273 (535)
+.|++|.| .++.|+..+.++++++++++++|+.|.++||.++|+|||. +.+..... +..|. ++..+.|.+
T Consensus 98 ~YRfSIsW-sRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~-------dlP~~L~~~yGGW~n~~~v~~F~~ 169 (497)
T PLN02998 98 AYRFSISW-SRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHF-------DLPQALEDEYGGWLSQEIVRDFTA 169 (497)
T ss_pred eEEeeccH-HhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCC-------CCCHHHHHhhCCcCCchHHHHHHH
Confidence 99999997 7888864345899999999999999999999999999984 33332222 35676 789999999
Q ss_pred HHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 274 IIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 274 ~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
+.+.++++|+| .|-.|-++|||..
T Consensus 170 YA~~~~~~fgd--rVk~WiT~NEP~~ 193 (497)
T PLN02998 170 YADTCFKEFGD--RVSHWTTINEVNV 193 (497)
T ss_pred HHHHHHHHhcC--cCCEEEEccCcch
Confidence 99999999999 8888999999985
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.56 E-value=9.1e-15 Score=157.11 Aligned_cols=157 Identities=18% Similarity=0.307 Sum_probs=118.9
Q ss_pred cEEecCCCCCCCc--ccCCcccceeccc--ccccccch---hhhc-cChhhhhHhHHhhhCccchHHHHHHHHHcCCCEE
Q 046395 126 MQVTADYKGPSTW--EENDPSVFNMTIV--STMHGEYQ---ITNG-YGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAV 197 (535)
Q Consensus 126 ~~v~a~~~~~~~w--~~~~ps~f~~~~~--~~~~~e~~---~~~~-~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~V 197 (535)
..-+|++|.||+| +++.||+|+.... ....+... .... ...+.|. +||+.| ++|+++||++|+|+.
T Consensus 13 G~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~----D~Yhry--~EDI~Lm~elG~~~y 86 (477)
T PRK15014 13 GGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAV----DFYGHY--KEDIKLFAEMGFKCF 86 (477)
T ss_pred eeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCccc----Cccccc--HHHHHHHHHcCCCEE
Confidence 3567899999999 4588999987431 10000000 0000 1234566 899999 999999999999999
Q ss_pred EeCCccccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC-CCCCCC-hHHHHHHHHH
Q 046395 198 RIPVGWWIAYDPKP-PKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD-GFQEWS-DSDIQETVAI 274 (535)
Q Consensus 198 Ripv~~w~~~~p~~-~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~-~~~~W~-~~~~~~~~~~ 274 (535)
|++|.| .++.|.. +..+++..+++++++|+.|.++||.++|+|||. +.+.... .+..|. ++..+.|+++
T Consensus 87 RfSIsW-sRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~-------dlP~~L~~~yGGW~n~~~~~~F~~Y 158 (477)
T PRK15014 87 RTSIAW-TRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF-------EMPLHLVQQYGSWTNRKVVDFFVRF 158 (477)
T ss_pred Eecccc-eeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-------CCCHHHHHhcCCCCChHHHHHHHHH
Confidence 999997 6777763 233688999999999999999999999999874 2222221 235675 7899999999
Q ss_pred HHHHHHHhCCCCcEEEEEeecCCC
Q 046395 275 IDFLASRYADHPSLVAIELMNEPK 298 (535)
Q Consensus 275 ~~~la~ry~~~p~V~~~el~NEP~ 298 (535)
++.++++|+| .|-.|-++|||.
T Consensus 159 a~~~f~~fgd--rVk~WiT~NEp~ 180 (477)
T PRK15014 159 AEVVFERYKH--KVKYWMTFNEIN 180 (477)
T ss_pred HHHHHHHhcC--cCCEEEEecCcc
Confidence 9999999999 688899999996
No 12
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.55 E-value=1.6e-14 Score=151.82 Aligned_cols=145 Identities=28% Similarity=0.431 Sum_probs=107.3
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC--CCCC------
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH--ALRV------ 246 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH--~~pg------ 246 (535)
+||+....++|++.|+++|+|+|||....|..++|.+|. | .+..||++|+.|.++||+|||.+- ..|.
T Consensus 5 e~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~-y---dF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 5 EQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQ-Y---DFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp GGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB-------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCe-e---ecHHHHHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 789888899999999999999999987778899999886 8 789999999999999999999884 3331
Q ss_pred ------CCCCCC-CCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-CC---ChHHHHHHHHHHH
Q 046395 247 ------SQNGSP-HSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-DL---KLDSLKTYYKAGY 315 (535)
Q Consensus 247 ------~~ng~~-~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-~~---~~~~~~~~~~~~~ 315 (535)
..+|.. ..|.+...+..++.+++.+.++++.|++||+++|+|++|+|.|||... .. +...++.|+++-|
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKY 160 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHh
Confidence 011111 122232333444889999999999999999999999999999999862 22 3467899999999
Q ss_pred HHHHhcCC
Q 046395 316 DTVRKYSS 323 (535)
Q Consensus 316 ~aIR~~~p 323 (535)
..|.+.+.
T Consensus 161 ~ti~~LN~ 168 (374)
T PF02449_consen 161 GTIEALNR 168 (374)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 88877764
No 13
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.54 E-value=1.6e-14 Score=155.22 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=119.9
Q ss_pred EEecCCCCCCCc--ccCCcccceeccc--ccccccch--hhhc--cChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEE
Q 046395 127 QVTADYKGPSTW--EENDPSVFNMTIV--STMHGEYQ--ITNG--YGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVR 198 (535)
Q Consensus 127 ~v~a~~~~~~~w--~~~~ps~f~~~~~--~~~~~e~~--~~~~--~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VR 198 (535)
.-+|++|.||+| +++.||+|+.... ....+... .... +..+.|. +||+.| ++|+++||++|+|+.|
T Consensus 12 ~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----D~Yhry--~eDi~Lm~~lG~~~yR 85 (476)
T PRK09589 12 GAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAI----DFYHRY--KEDIALFAEMGFKCFR 85 (476)
T ss_pred eechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccc----cHHHhh--HHHHHHHHHcCCCEEE
Confidence 567899999999 4588999987431 10000000 0011 1234566 899999 9999999999999999
Q ss_pred eCCccccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC-CCCCCC-hHHHHHHHHHH
Q 046395 199 IPVGWWIAYDPKP-PKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD-GFQEWS-DSDIQETVAII 275 (535)
Q Consensus 199 ipv~~w~~~~p~~-~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~-~~~~W~-~~~~~~~~~~~ 275 (535)
++|.| .++.|+. ++.++++.+++++++|+.|.++||.++|+|||. +.+.... .+..|. ++..+.|.++.
T Consensus 86 fSIsW-sRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~-------dlP~~L~~~yGGW~n~~~i~~F~~YA 157 (476)
T PRK09589 86 TSIAW-TRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHF-------EMPYHLVTEYGGWRNRKLIDFFVRFA 157 (476)
T ss_pred eccch-hhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC-------CCCHHHHHhcCCcCChHHHHHHHHHH
Confidence 99997 7888863 223688999999999999999999999999984 3332221 235676 78999999999
Q ss_pred HHHHHHhCCCCcEEEEEeecCCCC
Q 046395 276 DFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 276 ~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
+.++++|+| .|--|-++|||..
T Consensus 158 ~~~f~~fgd--rVk~WiT~NEp~~ 179 (476)
T PRK09589 158 EVVFTRYKD--KVKYWMTFNEINN 179 (476)
T ss_pred HHHHHHhcC--CCCEEEEecchhh
Confidence 999999999 8888999999973
No 14
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.54 E-value=1.8e-14 Score=154.55 Aligned_cols=155 Identities=14% Similarity=0.218 Sum_probs=118.1
Q ss_pred EEecCCCCCCCc--ccCCcccceecccccccccch----------h-hhc-cChhhhhHhHHhhhCccchHHHHHHHHHc
Q 046395 127 QVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQ----------I-TNG-YGPDKAAKLMRDHWKSYITEEDFKFMSQN 192 (535)
Q Consensus 127 ~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~----------~-~~~-~G~~~a~~~~~~hw~~~ite~D~~~ik~~ 192 (535)
.-+|++|.||+| +++.||+|+..... . +... . ... +..+.|. +||+.| ++|+++|+++
T Consensus 12 ~AtsA~QiEGa~~~~Gkg~siwD~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~A~----D~Yhry--~eDi~l~~~l 83 (474)
T PRK09852 12 GALAANQSEGAFREGGKGLTTVDMIPHG-E-HRMAVKLGLEKRFQLRDDEFYPSHEAI----DFYHRY--KEDIALMAEM 83 (474)
T ss_pred ccchHhhcCCCcCCCCCCCchhhccccC-C-CcccccccccccccccccCcCCCCccC----chhhhh--HHHHHHHHHc
Confidence 457899999999 45889999874321 0 1010 0 000 1234566 899999 9999999999
Q ss_pred CCCEEEeCCccccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC-CCCCCC-hHHHH
Q 046395 193 GLNAVRIPVGWWIAYDPKP-PKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD-GFQEWS-DSDIQ 269 (535)
Q Consensus 193 G~N~VRipv~~w~~~~p~~-~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~-~~~~W~-~~~~~ 269 (535)
|+|+.|++|.| .++.|+. +..+++..+++++++|+.|.++||.+||+||+. +.+.... .+..|. ++..+
T Consensus 84 G~~~yR~si~W-sRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~-------~~P~~l~~~~GGW~~~~~~~ 155 (474)
T PRK09852 84 GFKVFRTSIAW-SRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF-------DVPMHLVTEYGSWRNRKMVE 155 (474)
T ss_pred CCCeEEeecee-eeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-------CCCHHHHHhcCCCCCHHHHH
Confidence 99999999998 5666653 223688899999999999999999999999974 2222221 235676 78999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 270 ETVAIIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 270 ~~~~~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
.|.++++.++++|+| .|-.|-++|||..
T Consensus 156 ~F~~ya~~~~~~fgd--~Vk~WiTfNEPn~ 183 (474)
T PRK09852 156 FFSRYARTCFEAFDG--LVKYWLTFNEINI 183 (474)
T ss_pred HHHHHHHHHHHHhcC--cCCeEEeecchhh
Confidence 999999999999999 7888999999973
No 15
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.54 E-value=1.6e-14 Score=155.46 Aligned_cols=158 Identities=18% Similarity=0.307 Sum_probs=120.9
Q ss_pred cEEecCCCCCCCc--ccCCcccceeccccc--c---cccc---hhhhc--cChhhhhHhHHhhhCccchHHHHHHHHHcC
Q 046395 126 MQVTADYKGPSTW--EENDPSVFNMTIVST--M---HGEY---QITNG--YGPDKAAKLMRDHWKSYITEEDFKFMSQNG 193 (535)
Q Consensus 126 ~~v~a~~~~~~~w--~~~~ps~f~~~~~~~--~---~~e~---~~~~~--~G~~~a~~~~~~hw~~~ite~D~~~ik~~G 193 (535)
..-||++|.||+| +++.||+|+...... . .++- ...++ ...+.|. +||+.| ++|+++||++|
T Consensus 13 G~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----d~Yhry--~eDi~Lm~~lG 86 (478)
T PRK09593 13 GGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAI----DMYHHY--KEDIALFAEMG 86 (478)
T ss_pred eeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCccc----chHHhh--HHHHHHHHHcC
Confidence 3567899999999 458899998633210 0 0000 00000 1234566 899999 99999999999
Q ss_pred CCEEEeCCccccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC-CCCCCC-hHHHHH
Q 046395 194 LNAVRIPVGWWIAYDPKP-PKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD-GFQEWS-DSDIQE 270 (535)
Q Consensus 194 ~N~VRipv~~w~~~~p~~-~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~-~~~~W~-~~~~~~ 270 (535)
+|+.|++|.| .++.|.. +..++++.+++++++|+.|.++||.++|+|||. +.+.... .+..|. ++..+.
T Consensus 87 ~~aYRfSIsW-sRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~-------dlP~~L~~~~GGW~n~~~v~~ 158 (478)
T PRK09593 87 FKTYRMSIAW-TRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHF-------DCPMHLIEEYGGWRNRKMVGF 158 (478)
T ss_pred CCEEEEecch-hhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeccc-------CCCHHHHhhcCCCCChHHHHH
Confidence 9999999997 7888863 223788999999999999999999999999984 4433322 235776 788999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 271 TVAIIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 271 ~~~~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
|.++.+.++++|+| .|-.|-++|||..
T Consensus 159 F~~YA~~~~~~fgd--rVk~WiT~NEP~~ 185 (478)
T PRK09593 159 YERLCRTLFTRYKG--LVKYWLTFNEINM 185 (478)
T ss_pred HHHHHHHHHHHhcC--cCCEEEeecchhh
Confidence 99999999999999 8888999999974
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.48 E-value=9.7e-15 Score=157.12 Aligned_cols=183 Identities=18% Similarity=0.279 Sum_probs=127.5
Q ss_pred cEEecCCCCCCCcc--cCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEEeCCcc
Q 046395 126 MQVTADYKGPSTWE--ENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVRIPVGW 203 (535)
Q Consensus 126 ~~v~a~~~~~~~w~--~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VRipv~~ 203 (535)
..-||++|.||+|. .+.||+|+....... ....+...+.|. +||+.| ++|+++||++|+|+.|++|.|
T Consensus 12 G~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~----~~~~~~~~~~a~----d~y~~y--~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 12 GVATSAYQIEGAWNEDGKGPSIWDTFCHEPG----KVEDGSTGDVAC----DHYHRY--KEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp EEE--HHHHSSSTTSTTSTTBHHHHHHHSTT----SSTTSSSSSSTT----GHHHHH--HHHHHHHHHHT-SEEEEE--H
T ss_pred EEeceeccccceecCCCCCcccccccccccc----eeeccccCcccc----cchhhh--hHHHHHHHhhccceeeeecch
Confidence 35678899999983 477899985432210 011222234455 888888 999999999999999999997
Q ss_pred ccccCCCC-CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHH
Q 046395 204 WIAYDPKP-PKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWS-DSDIQETVAIIDFLASR 281 (535)
Q Consensus 204 w~~~~p~~-~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~-~~~~~~~~~~~~~la~r 281 (535)
.++.|.+ .+.+++..++.++++|+.|.++||++||+|||. +.+........|. ++..+.|.++.+.++++
T Consensus 82 -~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~-------~~P~~l~~~ggw~~~~~~~~F~~Ya~~~~~~ 153 (455)
T PF00232_consen 82 -SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF-------DLPLWLEDYGGWLNRETVDWFARYAEFVFER 153 (455)
T ss_dssp -HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS---------BHHHHHHTGGGSTHHHHHHHHHHHHHHHH
T ss_pred -hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeec-------ccccceeecccccCHHHHHHHHHHHHHHHHH
Confidence 7888885 345899999999999999999999999999984 2211111123454 68999999999999999
Q ss_pred hCCCCcEEEEEeecCCCCC------------C-CC-------hHHHHHHHHHHHHHHHhcCCCcEEE
Q 046395 282 YADHPSLVAIELMNEPKAP------------D-LK-------LDSLKTYYKAGYDTVRKYSSSAYVI 328 (535)
Q Consensus 282 y~~~p~V~~~el~NEP~~~------------~-~~-------~~~~~~~~~~~~~aIR~~~p~~~ii 328 (535)
|++ .|-.|-++|||... + .+ ...+.....++++++|+..++..|-
T Consensus 154 ~gd--~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IG 218 (455)
T PF00232_consen 154 FGD--RVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIG 218 (455)
T ss_dssp HTT--TBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEE
T ss_pred hCC--CcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEe
Confidence 999 78889999999741 1 11 1123334556778899988876653
No 17
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.46 E-value=8e-12 Score=139.43 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=137.9
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCC-CCCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQ-NGSPHSGSRDGF 260 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~-ng~~~sg~~~~~ 260 (535)
.+.||++||++|+|+||+.- + |.. ..+++.|.++||+|+-++......+ .+..........
T Consensus 315 ~~~d~~l~K~~G~N~vR~sh-~-------p~~----------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~ 376 (604)
T PRK10150 315 NVHDHNLMKWIGANSFRTSH-Y-------PYS----------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHHCCCCEEEecc-C-------CCC----------HHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 37899999999999999931 1 111 2368999999999998874311000 000000000111
Q ss_pred CCCC-----hHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Q 046395 261 QEWS-----DSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLGG 335 (535)
Q Consensus 261 ~~W~-----~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g~ 335 (535)
..|. ++..+.+.+.++.|.+|+++||+|++|.+.||+.. ..+....+++++++.+|+.||+++|..+.....
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~---~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~ 453 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPAS---REQGAREYFAPLAELTRKLDPTRPVTCVNVMFA 453 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCc---cchhHHHHHHHHHHHHHhhCCCCceEEEecccC
Confidence 1222 45677888999999999999999999999999864 234567899999999999999999887642100
Q ss_pred ChhhhhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCCCcC-------CCC
Q 046395 336 EWSELLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCEWE-------AEG 408 (535)
Q Consensus 336 ~~~~~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~~~-------~~~ 408 (535)
... .......-.|+++|.|..+.... .........+. ..+..+.+....|++++|||+... ...
T Consensus 454 ~~~---~~~~~~~~Dv~~~N~Y~~wy~~~--~~~~~~~~~~~----~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~ 524 (604)
T PRK10150 454 TPD---TDTVSDLVDVLCLNRYYGWYVDS--GDLETAEKVLE----KELLAWQEKLHKPIIITEYGADTLAGLHSMYDDM 524 (604)
T ss_pred Ccc---cccccCcccEEEEcccceecCCC--CCHHHHHHHHH----HHHHHHHHhcCCCEEEEccCCccccccccCCCCC
Confidence 100 00012335788888775432110 01111111111 122222222245699999995321 112
Q ss_pred CCHHHHHHHHHHHHHHHhh--CCcceEEEeeeeCC
Q 046395 409 ASKRDYQRFAEAQLDVYGR--ATFGWAYWAYKFAE 441 (535)
Q Consensus 409 ~~~~~~~~~~~~ql~~~~~--~~~Gw~~W~~k~~~ 441 (535)
.+.+....+++..++++.+ .-+|-+.|+|..-.
T Consensus 525 ~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D~~ 559 (604)
T PRK10150 525 WSEEYQCAFLDMYHRVFDRVPAVVGEQVWNFADFA 559 (604)
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEEeeeccC
Confidence 2333333567777777764 33689999987643
No 18
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.45 E-value=1e-11 Score=126.72 Aligned_cols=223 Identities=22% Similarity=0.340 Sum_probs=131.2
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC-----CCCCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA-----LRVSQNGSPHSGS 256 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~-----~pg~~ng~~~sg~ 256 (535)
.++-|+.||+.|+|.|||-+ +.+|..++ + ..++...++.+.|+++||+|+||+|- .||.|.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv----wv~P~~~g-~--~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~------- 91 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV----WVNPYDGG-Y--NDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN------- 91 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-TTTT-T--TSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B-------
T ss_pred CCCHHHHHHhcCCCeEEEEe----ccCCcccc-c--CCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-------
Confidence 36889999999999999966 34555422 1 26888888999999999999999993 244442
Q ss_pred CCCCCCCC----hH----HHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCC-------CCCChHHHHHHHHHHHHHHHhc
Q 046395 257 RDGFQEWS----DS----DIQETVAIIDFLASRYADHPSLVAIELMNEPKA-------PDLKLDSLKTYYKAGYDTVRKY 321 (535)
Q Consensus 257 ~~~~~~W~----~~----~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~-------~~~~~~~~~~~~~~~~~aIR~~ 321 (535)
-...|. ++ ..+++.++++.|.+ .+-.| -.++|-||-.. .....+.+..++..++++||+.
T Consensus 92 --~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~~p--d~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~ 166 (332)
T PF07745_consen 92 --KPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGVTP--DMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREV 166 (332)
T ss_dssp ----TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT--E--SEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTH
T ss_pred --CCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCc--cEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhc
Confidence 334554 22 23344444444432 33333 34799999653 2345688999999999999999
Q ss_pred CCCcEEEEcCCCCCChh---hhhccc--CCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEE
Q 046395 322 SSSAYVILSNRLGGEWS---ELLSFA--SNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSF 396 (535)
Q Consensus 322 ~p~~~ii~~~~~g~~~~---~~~~~~--~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~ 396 (535)
+|+..|+++-.-+.+.. .+.+.. .+.+-.|+.+++|+.|.. .++.+... +..+.++.+++++
T Consensus 167 ~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---------~l~~l~~~----l~~l~~ry~K~V~ 233 (332)
T PF07745_consen 167 DPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---------TLEDLKNN----LNDLASRYGKPVM 233 (332)
T ss_dssp SSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST----------HHHHHHH----HHHHHHHHT-EEE
T ss_pred CCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc---------hHHHHHHH----HHHHHHHhCCeeE
Confidence 99999998743323331 121111 346778999999976532 23333332 3334333356799
Q ss_pred EeccCCCcCC------------------CCCCHHHHHHHHHHHHHHHhh----CCcceEEEe
Q 046395 397 VGEWSCEWEA------------------EGASKRDYQRFAEAQLDVYGR----ATFGWAYWA 436 (535)
Q Consensus 397 vGEfg~~~~~------------------~~~~~~~~~~~~~~ql~~~~~----~~~Gw~~W~ 436 (535)
|.|.|..|.. ...+.+.-.+|++++++.... .+.|-+||.
T Consensus 234 V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWe 295 (332)
T PF07745_consen 234 VVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWE 295 (332)
T ss_dssp EEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-
T ss_pred EEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeec
Confidence 9999976541 012345567788888887765 568999984
No 19
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.44 E-value=1.2e-12 Score=113.64 Aligned_cols=100 Identities=31% Similarity=0.378 Sum_probs=87.9
Q ss_pred CcEEEEecCCCceEEeccCCCCCCCCceeEEEEecC-CeEEEEeeCCcEEEeecCCCeEEEeccCCCCCCceEEEecCCC
Q 046395 28 KKYLTAENGSETILMANHNSSSTSSWQTFRLWRINE-TFYNFRLSNKQFIGLENQGNKLVAVSATEKFPEPFQITRKNGE 106 (535)
Q Consensus 28 ~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e~f~~~~~~~~ 106 (535)
++|+++|..|+. |.|||... +.||+|+|+..++ ..+.||..+|+|++++. +|.|+|++++|+++++|+|+.+
T Consensus 2 ~~~~~~~k~~~~-l~an~~~~--~~~e~f~le~~~~~~~v~lrs~~GkYls~~~-~G~v~~~~~~~~~~~~F~i~~~--- 74 (111)
T PF06268_consen 2 NGYLVSEKFGAH-LNANRASL--SDWETFQLEFDDGSYKVALRSHNGKYLSVDS-DGSVVADSETPGPDEFFEIEWH--- 74 (111)
T ss_dssp TEEEEETTCTCB-EEEEESSS--SCGGSEEEEEETTEEEEEEECTTSEEEEEET-TSEEEEEESSSSGGGCBEEEEE---
T ss_pred CcEEEEEEcCCE-EECChhcC--cccEEEEEEEECCCCEEEEEcCCCCEEEEcC-CCeEEecCCCCCCCcEEEEEEC---
Confidence 689999998654 99999999 9999999997776 44679999999999998 8889999999999999999998
Q ss_pred CceeEEEecCCceEEEecccEEecCCCC
Q 046395 107 PHRVRFRASNGYFLQAKSEMQVTADYKG 134 (535)
Q Consensus 107 ~~~v~I~~~nG~flq~~~~~~v~a~~~~ 134 (535)
.+.+.++++||+||.+..+..+.|....
T Consensus 75 ~~~~~~~~~nGkYl~~~~~g~l~a~~~~ 102 (111)
T PF06268_consen 75 GGKVALRASNGKYLSAGPNGQLKANATS 102 (111)
T ss_dssp TTEEEEECTTSCEEEEETTTEEEEEESS
T ss_pred CCEEEEECCCCCEEeeCCCCeEEEcCCC
Confidence 3468899999999998888888876543
No 20
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.2e-11 Score=135.70 Aligned_cols=165 Identities=24% Similarity=0.360 Sum_probs=123.4
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHH-HHHHHHcCCEEEEec-C-CC-CC----
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNA-FRWAQKYGMKVIVDL-H-AL-RV---- 246 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~-i~~a~~~Gi~VIldl-H-~~-pg---- 246 (535)
.+|++...++|++.||++|+|+||+....|.+.+|.+|. | .|..+|.. ++.|.+.||+|||-- . .+ |.
T Consensus 25 ~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~-f---df~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~ 100 (673)
T COG1874 25 ERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGK-F---DFTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAK 100 (673)
T ss_pred HHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccc-c---CcccchHHHHHHHHhcCceEEEecCCCCCCchHHhc
Confidence 566667779999999999999999966667999999887 7 45577777 999999999999977 3 11 21
Q ss_pred --------CCCCC-CCCCCCCCCCCCChHHHHHHHHHHHHHHHH-hCCCCcEEEEEeecCCCC-C---CCChHHHHHHHH
Q 046395 247 --------SQNGS-PHSGSRDGFQEWSDSDIQETVAIIDFLASR-YADHPSLVAIELMNEPKA-P---DLKLDSLKTYYK 312 (535)
Q Consensus 247 --------~~ng~-~~sg~~~~~~~W~~~~~~~~~~~~~~la~r-y~~~p~V~~~el~NEP~~-~---~~~~~~~~~~~~ 312 (535)
..++. ...+.+...|.-++.+++....+.+.|++| |+++|+|++|.+-||-.+ + +.+...++.|.+
T Consensus 101 ~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk 180 (673)
T COG1874 101 KYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLK 180 (673)
T ss_pred CChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHHHHH
Confidence 00110 112233334444467888888999999999 999999999999999876 2 345678888999
Q ss_pred HHHHHHHhcCCCcEEEE-cCCCCCChhhhhccc
Q 046395 313 AGYDTVRKYSSSAYVIL-SNRLGGEWSELLSFA 344 (535)
Q Consensus 313 ~~~~aIR~~~p~~~ii~-~~~~g~~~~~~~~~~ 344 (535)
+-+..+...+......+ ++.+ .++.++..+.
T Consensus 181 ~~yg~l~~ln~~w~t~~ws~t~-~~~~~i~~p~ 212 (673)
T COG1874 181 KGYGSLDNLNEAWGTSFWSHTY-KDFDEIMSPN 212 (673)
T ss_pred hCcchHHhhhhhhhhhhccccc-ccHHhhcCCC
Confidence 99998888887766443 6666 6777776553
No 21
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2e-12 Score=132.76 Aligned_cols=246 Identities=13% Similarity=0.142 Sum_probs=162.4
Q ss_pred HHhhhCccchHHHHHHHHHcCCCEEEeCCccccccCCC-----CCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q 046395 173 MRDHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK-----PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVS 247 (535)
Q Consensus 173 ~~~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~-----~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~ 247 (535)
+-.||.....++|++.++.+|++.+|+-+ ++.+ .|....+..+.+++..++.|..++|+|+|.+-.
T Consensus 19 mw~~~~~~ei~~dle~a~~vg~k~lR~fi-----LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitliv---- 89 (587)
T COG3934 19 MWPAIGNREIKADLEPAGFVGVKDLRLFI-----LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIV---- 89 (587)
T ss_pred HHHHhhhhhhhcccccccCccceeEEEEE-----ecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEee----
Confidence 34566654557889999999999999942 2311 222222335999999999999999999998853
Q ss_pred CCCCCCCCCCCCCCCCC-----------hHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCC-CCCChHHHHHHHHHHH
Q 046395 248 QNGSPHSGSRDGFQEWS-----------DSDIQETVAIIDFLASRYADHPSLVAIELMNEPKA-PDLKLDSLKTYYKAGY 315 (535)
Q Consensus 248 ~ng~~~sg~~~~~~~W~-----------~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~-~~~~~~~~~~~~~~~~ 315 (535)
+++|.|.+.-...|. +..+..+.++++.+.+.|+-+|+|++|++-|||.. .+.+...+-.|...++
T Consensus 90 --g~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy 167 (587)
T COG3934 90 --GLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMY 167 (587)
T ss_pred --cccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHH
Confidence 222322222222232 45667789999999999999999999999999987 3566789999999999
Q ss_pred HHHHhcCCCcEEEEcCCCCCChhhhhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcE
Q 046395 316 DTVRKYSSSAYVILSNRLGGEWSELLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLS 395 (535)
Q Consensus 316 ~aIR~~~p~~~ii~~~~~g~~~~~~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v 395 (535)
..|+.+||+++|-+++.. +-+..+.++.....-..-+.|.|..|+.+- -..+...+. ...+......+-.|+
T Consensus 168 ~yiK~ldd~hlvsvGD~~-sp~~~~~pyN~r~~vDya~~hLY~hyd~sl---~~r~s~~yg----~~~l~i~~~~g~~pV 239 (587)
T COG3934 168 AYIKWLDDGHLVSVGDPA-SPWPQYAPYNARFYVDYAANHLYRHYDTSL---VSRVSTVYG----KPYLDIPTIMGWQPV 239 (587)
T ss_pred HHhhccCCCCeeecCCcC-CcccccCCcccceeeccccchhhhhccCCh---hheeeeeec----chhhccchhccccee
Confidence 999999999999887643 123333333222233345779886543221 011111111 111211222222569
Q ss_pred EEeccCCCcCCCCCCHHHHHHHHHHHHHHHhhCCcceEEEeeeeC
Q 046395 396 FVGEWSCEWEAEGASKRDYQRFAEAQLDVYGRATFGWAYWAYKFA 440 (535)
Q Consensus 396 ~vGEfg~~~~~~~~~~~~~~~~~~~ql~~~~~~~~Gw~~W~~k~~ 440 (535)
++.|||.+..........|+-|... ++...+-|..+||+...
T Consensus 240 ~leefGfsta~g~e~s~ayfiw~~l---al~~ggdGaLiwclsdf 281 (587)
T COG3934 240 NLEEFGFSTAFGQENSPAYFIWIRL---ALDTGGDGALIWCLSDF 281 (587)
T ss_pred eccccCCcccccccccchhhhhhhh---HHhhcCCceEEEEecCC
Confidence 9999998765544445556666653 55557789999999875
No 22
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.9e-12 Score=136.32 Aligned_cols=160 Identities=21% Similarity=0.318 Sum_probs=125.5
Q ss_pred CceEEEecccEEecCCCCCCCc--ccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCC
Q 046395 117 GYFLQAKSEMQVTADYKGPSTW--EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGL 194 (535)
Q Consensus 117 G~flq~~~~~~v~a~~~~~~~w--~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~ 194 (535)
.+|+-. ..+|+||.||++ +...||+|+.+....++ ..+.....+.|. ++|+.| ++|+++||++|+
T Consensus 39 ~~F~FG----tAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~---~~~~~~ngdva~----D~Yh~y--keDv~Lmk~lgv 105 (524)
T KOG0626|consen 39 KGFLFG----TATSAYQVEGAANEDGRGPSVWDTFTHKYPG---KICDGSNGDVAV----DFYHRY--KEDVKLMKELGV 105 (524)
T ss_pred CCceee----ccchHHHhhhhhccCCCCCchhhhhhccCCc---ccccCCCCCeec----hhhhhh--HHHHHHHHHcCC
Confidence 466644 456789999988 45899999875433221 122333346676 788887 999999999999
Q ss_pred CEEEeCCccccccCCCCC--CCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCC-CCCCCCC-hHHHHH
Q 046395 195 NAVRIPVGWWIAYDPKPP--KPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSR-DGFQEWS-DSDIQE 270 (535)
Q Consensus 195 N~VRipv~~w~~~~p~~~--~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~-~~~~~W~-~~~~~~ 270 (535)
++.|+.|+| .++-|... ...+++.++++..+|+.+.++||.++|+|.| |+++... +.+..|. ++.++.
T Consensus 106 ~afRFSIsW-SRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-------wDlPq~LeDeYgGwLn~~ived 177 (524)
T KOG0626|consen 106 DAFRFSISW-SRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-------WDLPQALEDEYGGWLNPEIVED 177 (524)
T ss_pred CeEEEEeeh-HhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-------CCCCHHHHHHhccccCHHHHHH
Confidence 999999997 66666543 3478899999999999999999999999987 3443322 3366777 889999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 271 TVAIIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 271 ~~~~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
|.++.+.+.++|+| .|-.|-++|||..
T Consensus 178 F~~yA~~CF~~fGD--rVK~WiT~NEP~v 204 (524)
T KOG0626|consen 178 FRDYADLCFQEFGD--RVKHWITFNEPNV 204 (524)
T ss_pred HHHHHHHHHHHhcc--cceeeEEecccce
Confidence 99999999999999 8999999999984
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.26 E-value=4.6e-10 Score=114.49 Aligned_cols=120 Identities=21% Similarity=0.312 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
+.|+.+||++|+|+||+.-. |.. .++++.|.++||.|+.++.....+ .+...+. .....
T Consensus 39 ~~d~~l~k~~G~N~iR~~h~--------p~~----------~~~~~~cD~~GilV~~e~~~~~~~--~~~~~~~-~~~~~ 97 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHHY--------PPS----------PRFYDLCDELGILVWQEIPLEGHG--SWQDFGN-CNYDA 97 (298)
T ss_dssp HHHHHHHHHTT-SEEEETTS----------S----------HHHHHHHHHHT-EEEEE-S-BSCT--SSSSTSC-TSCTT
T ss_pred HHHHHHHHhcCcceEEcccc--------cCc----------HHHHHHHhhcCCEEEEeccccccC--ccccCCc-cccCC
Confidence 79999999999999999221 111 237899999999999998642110 0111110 00001
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
-.++..+.+.+-++.+.+|+++||+|+.|.+.||+ ....+++++++.+|+.||+++|....
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeecc
Confidence 11567888899999999999999999999999999 56788899999999999999987765
No 24
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.09 E-value=5e-10 Score=98.29 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=69.7
Q ss_pred CceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEEeeCCcEEEeecCCCeEEEeccCCCCCC
Q 046395 17 GTQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFRLSNKQFIGLENQGNKLVAVSATEKFPE 96 (535)
Q Consensus 17 ~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e 96 (535)
+..|+||| .+|+||+++..| .|.|++. + +.||+|.+-..+++++.||..||+||+++. +|.|.|++++|+.+|
T Consensus 43 ~g~v~Lrs-~~G~yls~~~~g--~l~~~~~-~--~~~e~F~~e~~~~g~~al~~~~G~yl~~~~-~g~l~~~~~~~~~~e 115 (119)
T cd00257 43 TGKYALRS-HDGKYLSADSDG--GVQLEGH-P--NADCRFTLEFHGDGKWALRAENGRYLGGDG-SGTLKASSETVGPDE 115 (119)
T ss_pred CCeEEEEE-CCCcEEEEECCC--CEEecCC-C--CCCcEEEEEECCCCeEEEEcCCCCEEeecC-CCeEEEecCCCCccc
Confidence 57799998 799999998766 5899998 8 999999998888899999999999999987 779999999999999
Q ss_pred ceEE
Q 046395 97 PFQI 100 (535)
Q Consensus 97 ~f~~ 100 (535)
.|.+
T Consensus 116 ~f~~ 119 (119)
T cd00257 116 LFEL 119 (119)
T ss_pred eecC
Confidence 9953
No 25
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.98 E-value=2.1e-08 Score=117.44 Aligned_cols=188 Identities=18% Similarity=0.220 Sum_probs=116.5
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec----CCCCCCCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL----HALRVSQNGSPHSGSR 257 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl----H~~pg~~ng~~~sg~~ 257 (535)
.++|+++||++|+|+||+.- + |..+ .+.+.|.++||+|+-+. |..+ ..+..
T Consensus 357 ~~~dl~lmK~~g~NavR~sH-y-------P~~~----------~fydlcDe~GllV~dE~~~e~~g~~-------~~~~~ 411 (1021)
T PRK10340 357 VEKDIQLMKQHNINSVRTAH-Y-------PNDP----------RFYELCDIYGLFVMAETDVESHGFA-------NVGDI 411 (1021)
T ss_pred HHHHHHHHHHCCCCEEEecC-C-------CCCH----------HHHHHHHHCCCEEEECCcccccCcc-------ccccc
Confidence 37899999999999999841 1 2222 26899999999999875 3321 00000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCh
Q 046395 258 DGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLGGEW 337 (535)
Q Consensus 258 ~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g~~~ 337 (535)
....-.+...+.+.+-++.|.+|+++||+|+.|.+.||.... ....++++.+|+.||.++|..++..
T Consensus 412 -~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g--------~~~~~~~~~~k~~DptR~v~~~~~~---- 478 (1021)
T PRK10340 412 -SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG--------CNIRAMYHAAKALDDTRLVHYEEDR---- 478 (1021)
T ss_pred -ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc--------HHHHHHHHHHHHhCCCceEEeCCCc----
Confidence 000001455667777889999999999999999999998631 1236889999999999998765321
Q ss_pred hhhhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCCCcCCCCCCHHHHHHH
Q 046395 338 SELLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCEWEAEGASKRDYQRF 417 (535)
Q Consensus 338 ~~~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~~~~~~~~~~~~~~~ 417 (535)
....-.|++. +|... +.+.. . .......|+++.|++.+.+...+..++|++.
T Consensus 479 -------~~~~~Dv~~~-~Y~~~-------------~~~~~-----~--~~~~~~kP~i~~Ey~hamgn~~g~~~~yw~~ 530 (1021)
T PRK10340 479 -------DAEVVDVIST-MYTRV-------------ELMNE-----F--GEYPHPKPRILCEYAHAMGNGPGGLTEYQNV 530 (1021)
T ss_pred -------Cccccceecc-ccCCH-------------HHHHH-----H--HhCCCCCcEEEEchHhccCCCCCCHHHHHHH
Confidence 0111233442 23221 11111 0 0111235699999997765444444555543
Q ss_pred HHHHHHHHhhCCcceEEEeeeeC
Q 046395 418 AEAQLDVYGRATFGWAYWAYKFA 440 (535)
Q Consensus 418 ~~~ql~~~~~~~~Gw~~W~~k~~ 440 (535)
++. + ..-+|-+.|.|...
T Consensus 531 ~~~----~-p~l~GgfiW~~~D~ 548 (1021)
T PRK10340 531 FYK----H-DCIQGHYVWEWCDH 548 (1021)
T ss_pred HHh----C-CceeEEeeeecCcc
Confidence 322 1 13468899998774
No 26
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=9.8e-08 Score=93.29 Aligned_cols=199 Identities=19% Similarity=0.306 Sum_probs=119.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCC--CCCCCccc--hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPK--PPKPFVGG--SLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~--~~~~~~~~--~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
++-|+.||..|+|.|||-| +.+|. .+.+|-.+ .++..-++-+.|+..||+|++|+|-- .-|..++...
T Consensus 66 qD~~~iLK~~GvNyvRlRv----wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYS----DfwaDPakQ~ 137 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV----WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYS----DFWADPAKQK 137 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE----ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccch----hhccChhhcC
Confidence 6778889999999999966 23443 22334332 57777778888999999999999931 0012222222
Q ss_pred CCCCCC----hHHHHHHHHHHHHHHHHhCCCC-cEEEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 259 GFQEWS----DSDIQETVAIIDFLASRYADHP-SLVAIELMNEPKAP-------DLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 259 ~~~~W~----~~~~~~~~~~~~~la~ry~~~p-~V~~~el~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
....|. +.-....-++-+...+.+++.. ..-+.++-||-... ....+.+...+.+++.+||+.+|+..
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ik 217 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIK 217 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCce
Confidence 334454 2222233344444444454432 22346899997652 23567889999999999999999998
Q ss_pred EEEcCCCC--CC-----hhhhhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEec
Q 046395 327 VILSNRLG--GE-----WSELLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGE 399 (535)
Q Consensus 327 ii~~~~~g--~~-----~~~~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGE 399 (535)
|+++-.-| .+ ++++.. ...+-.|+...+|+.|.. .+..+... +..++....+.|+|-|
T Consensus 218 v~lHla~g~~n~~y~~~fd~ltk--~nvdfDVig~SyYpyWhg---------tl~nL~~n----l~dia~rY~K~VmV~E 282 (403)
T COG3867 218 VALHLAEGENNSLYRWIFDELTK--RNVDFDVIGSSYYPYWHG---------TLNNLTTN----LNDIASRYHKDVMVVE 282 (403)
T ss_pred EEEEecCCCCCchhhHHHHHHHH--cCCCceEEeeeccccccC---------cHHHHHhH----HHHHHHHhcCeEEEEE
Confidence 88863222 11 122222 244567788778865432 22222222 3334444455689999
Q ss_pred cCCCc
Q 046395 400 WSCEW 404 (535)
Q Consensus 400 fg~~~ 404 (535)
-+..+
T Consensus 283 tay~y 287 (403)
T COG3867 283 TAYTY 287 (403)
T ss_pred eccee
Confidence 87643
No 27
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.95 E-value=2.8e-08 Score=116.28 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC-CCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHAL-RVSQNGSPHSGSRDGFQ 261 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~-pg~~ng~~~sg~~~~~~ 261 (535)
++||++||++|+|+||+.- + |..+ ++.++|.++||+|+-+.... .|.. . .+..
T Consensus 374 ~~di~lmK~~g~NaVR~sH-y-------P~~p----------~fydlcDe~GilV~dE~~~e~hg~~-~-------~~~~ 427 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCSH-Y-------PNHP----------LWYELCDRYGLYVVDEANIETHGMV-P-------MNRL 427 (1027)
T ss_pred HHHHHHHHHCCCCEEEecC-C-------CCCH----------HHHHHHHHcCCEEEEecCccccCCc-c-------ccCC
Confidence 6899999999999999931 1 2121 26799999999999886310 0100 0 0000
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 262 EWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 262 ~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
.-.++..+.+.+-++.|.+|+++||+|+.|.+.||+... ....++++.+|+.||.++|...+
T Consensus 428 ~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g--------~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 428 SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHG--------ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC--------hhHHHHHHHHHhhCCCCcEEECC
Confidence 001456777888899999999999999999999998641 12467889999999999988764
No 28
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.95 E-value=9.6e-08 Score=95.18 Aligned_cols=199 Identities=17% Similarity=0.209 Sum_probs=124.8
Q ss_pred ccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC-----hHHHHHHHHHHHHH
Q 046395 204 WIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWS-----DSDIQETVAIIDFL 278 (535)
Q Consensus 204 w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~-----~~~~~~~~~~~~~l 278 (535)
|..++|.+|. | .++.+|+++++|+++||+|- -|..- .+. ..+.|. ++..+.+.++++.+
T Consensus 3 W~~~ep~~G~-~---n~~~~D~~~~~a~~~gi~v~--gH~l~------W~~----~~P~W~~~~~~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQ-F---NFSGADAIVNFAKENGIKVR--GHTLV------WHS----QTPDWVFNLSKETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCc-c---ChHHHHHHHHHHHHCCCEEE--EEEEe------ecc----cCCHhhhcCCHHHHHHHHHHHHHHH
Confidence 4667887775 6 78999999999999999983 23210 000 111222 35678889999999
Q ss_pred HHHhCCCCcEEEEEeecCCCCCCC------ChHHH--HHHHHHHHHHHHhcCCCcEEEEcCCCC--CC---hh-------
Q 046395 279 ASRYADHPSLVAIELMNEPKAPDL------KLDSL--KTYYKAGYDTVRKYSSSAYVILSNRLG--GE---WS------- 338 (535)
Q Consensus 279 a~ry~~~p~V~~~el~NEP~~~~~------~~~~~--~~~~~~~~~aIR~~~p~~~ii~~~~~g--~~---~~------- 338 (535)
++||++ .|..|++.|||..... ..... .+|+..+++++|+++|+..+++.+ |+ .. ..
T Consensus 67 ~~ry~g--~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd-y~~~~~~~k~~~~~~~v~ 143 (254)
T smart00633 67 VGRYKG--KIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND-YNTEEPNAKRQAIYELVK 143 (254)
T ss_pred HHHhCC--cceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec-cCCcCccHHHHHHHHHHH
Confidence 999998 5888999999986421 11111 278999999999999999888853 32 11 11
Q ss_pred hhhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCCCcCCCCCCHHHHHHHH
Q 046395 339 ELLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCEWEAEGASKRDYQRFA 418 (535)
Q Consensus 339 ~~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~~~~~~~~~~~~~~~~ 418 (535)
.+.....+-+.+-+..|.+... .+ .+.+. +.|..+.+. +.|++|+|+...... +.+...+++
T Consensus 144 ~l~~~g~~iDgiGlQ~H~~~~~------~~----~~~~~----~~l~~~~~~-g~pi~iTE~dv~~~~---~~~~qA~~~ 205 (254)
T smart00633 144 KLKAKGVPIDGIGLQSHLSLGS------PN----IAEIR----AALDRFASL-GLEIQITELDISGYP---NPQAQAADY 205 (254)
T ss_pred HHHHCCCccceeeeeeeecCCC------CC----HHHHH----HHHHHHHHc-CCceEEEEeecCCCC---cHHHHHHHH
Confidence 1111123356666777876321 11 22222 234445444 556999999876532 213334455
Q ss_pred HHHHHHHhh--CCcceEEEeeee
Q 046395 419 EAQLDVYGR--ATFGWAYWAYKF 439 (535)
Q Consensus 419 ~~ql~~~~~--~~~Gw~~W~~k~ 439 (535)
+..++++-+ ...|-++|.+..
T Consensus 206 ~~~l~~~~~~p~v~gi~~Wg~~d 228 (254)
T smart00633 206 EEVFKACLAHPAVTGVTVWGVTD 228 (254)
T ss_pred HHHHHHHHcCCCeeEEEEeCCcc
Confidence 556666654 336888998765
No 29
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.88 E-value=8.4e-09 Score=89.43 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=69.2
Q ss_pred CceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEEeeCCcEEEeecCCCeEEEeccCCCCCC
Q 046395 17 GTQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFRLSNKQFIGLENQGNKLVAVSATEKFPE 96 (535)
Q Consensus 17 ~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e 96 (535)
+..|+||| .+||||+++.-| .|+|++..+ +.|++|.|-.- ++...||..||+||++.. +|.|.|++++|+.+|
T Consensus 35 ~~~v~lrs-~~GkYls~~~~G--~v~~~~~~~--~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~-~g~l~a~~~~~~~~e 107 (111)
T PF06268_consen 35 SYKVALRS-HNGKYLSVDSDG--SVVADSETP--GPDEFFEIEWH-GGKVALRASNGKYLSAGP-NGQLKANATSPGKDE 107 (111)
T ss_dssp EEEEEEEC-TTSEEEEEETTS--EEEEEESSS--SGGGCBEEEEE-TTEEEEECTTSCEEEEET-TTEEEEEESSSSGGG
T ss_pred CCEEEEEc-CCCCEEEEcCCC--eEEecCCCC--CCCcEEEEEEC-CCEEEEECCCCCEEeeCC-CCeEEEcCCCCCcce
Confidence 46678995 799999998766 699999988 99999999987 778889999999999887 889999999999999
Q ss_pred ceEE
Q 046395 97 PFQI 100 (535)
Q Consensus 97 ~f~~ 100 (535)
-|++
T Consensus 108 lf~~ 111 (111)
T PF06268_consen 108 LFEY 111 (111)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9975
No 30
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.69 E-value=4.8e-07 Score=90.53 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=72.8
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF 260 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~ 260 (535)
+.+.|+..|+++|+|+||+ | .++|.. --|..++.+.+.||||||||-....+-+... ..
T Consensus 54 ~C~rDi~~l~~LgiNtIRV---Y--~vdp~~----------nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~~------P~ 112 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRV---Y--SVDPSK----------NHDECMSAFADAGIYVILDLNTPNGSINRSD------PA 112 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEE---S-----TTS------------HHHHHHHHHTT-EEEEES-BTTBS--TTS--------
T ss_pred HHHHhHHHHHHcCCCEEEE---E--EeCCCC----------CHHHHHHHHHhCCCEEEEecCCCCccccCCC------Cc
Confidence 4589999999999999999 2 334432 3577899999999999999987533322110 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC---CChHHHHHHHHHHHHHHHhcCCCc
Q 046395 261 QEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPD---LKLDSLKTYYKAGYDTVRKYSSSA 325 (535)
Q Consensus 261 ~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~ 325 (535)
..|.....+++ ..+.+.|+.+|+++||-+-||-.... ....-++...+++-+.|++.....
T Consensus 113 ~sw~~~l~~~~----~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~ 176 (314)
T PF03198_consen 113 PSWNTDLLDRY----FAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS 176 (314)
T ss_dssp ----HHHHHHH----HHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS--
T ss_pred CCCCHHHHHHH----HHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC
Confidence 24444444444 44445578899999999999987532 124556777777778888866543
No 31
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.67 E-value=1.3e-07 Score=102.87 Aligned_cols=258 Identities=17% Similarity=0.274 Sum_probs=124.2
Q ss_pred ChhhhhHhHHhhhCccchHHHHHHHH-HcCCCEEEeCCccccccCCC--------CCC-CCccchHHHHHHHHHHHHHcC
Q 046395 165 GPDKAAKLMRDHWKSYITEEDFKFMS-QNGLNAVRIPVGWWIAYDPK--------PPK-PFVGGSLQALDNAFRWAQKYG 234 (535)
Q Consensus 165 G~~~a~~~~~~hw~~~ite~D~~~ik-~~G~N~VRipv~~w~~~~p~--------~~~-~~~~~~l~~ld~~i~~a~~~G 234 (535)
|...+...++.+| .+.+..++ +.||..||+ ++.+.+.- .+. +| .|..+|++++.+.++|
T Consensus 29 ~~g~a~~~l~~~~-----q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Y---nf~~lD~i~D~l~~~g 97 (486)
T PF01229_consen 29 GSGRANLLLRADW-----QEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPY---NFTYLDQILDFLLENG 97 (486)
T ss_dssp EES-GGGGGBHHH-----HHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT
T ss_pred CCCchHHHhhHHH-----HHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcC---ChHHHHHHHHHHHHcC
Confidence 3345666677777 67778776 799999999 33332110 111 13 6999999999999999
Q ss_pred CEEEEecCCCCCCCCCCCCCCCCCCCCCC-----ChHHHHHHHHHH----HHHHHHhCCCC-cEEEEEeecCCCCCC---
Q 046395 235 MKVIVDLHALRVSQNGSPHSGSRDGFQEW-----SDSDIQETVAII----DFLASRYADHP-SLVAIELMNEPKAPD--- 301 (535)
Q Consensus 235 i~VIldlH~~pg~~ng~~~sg~~~~~~~W-----~~~~~~~~~~~~----~~la~ry~~~p-~V~~~el~NEP~~~~--- 301 (535)
|+++|.|--.|..-. ++. ...-.| .+...+.+.+++ +++.+||+... .--.||++|||....
T Consensus 98 ~~P~vel~f~p~~~~----~~~-~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~ 172 (486)
T PF01229_consen 98 LKPFVELGFMPMALA----SGY-QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWW 172 (486)
T ss_dssp -EEEEEE-SB-GGGB----SS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSG
T ss_pred CEEEEEEEechhhhc----CCC-CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccC
Confidence 999999975542110 000 000011 134445555444 55555665321 112489999998742
Q ss_pred -CChHHHHHHHHHHHHHHHhcCCCcEEEEcC--CCC-CC-hhhhhccc--CCCCcEEEEEeecCcCCCcccCCChh---h
Q 046395 302 -LKLDSLKTYYKAGYDTVRKYSSSAYVILSN--RLG-GE-WSELLSFA--SNLSRVVIDVHFYNLFWDNFNKMSVQ---Q 371 (535)
Q Consensus 302 -~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~--~~g-~~-~~~~~~~~--~~~~n~v~d~H~Y~~~~~~~~~~~~~---~ 371 (535)
.....+.++|+.++++||+++|...|- ++ .++ .. ...++.+. ...+-..+++|.|............. .
T Consensus 173 ~~~~~ey~~ly~~~~~~iK~~~p~~~vG-Gp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~ 251 (486)
T PF01229_consen 173 DGTPEEYFELYDATARAIKAVDPELKVG-GPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIE 251 (486)
T ss_dssp GG-HHHHHHHHHHHHHHHHHH-TTSEEE-EEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB-
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCccc-CccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhh
Confidence 234678999999999999999998743 32 232 11 12333221 22445789999997421111110110 1
Q ss_pred hHHHHHHhhhHHHHHHhhcCC--CcEEEeccCCCcCCCCCCHH-HH-HHHH-HHHHHHHhhCCcceEEEeeee
Q 046395 372 NIDYIYRQRSSDLRNVTTSDG--PLSFVGEWSCEWEAEGASKR-DY-QRFA-EAQLDVYGRATFGWAYWAYKF 439 (535)
Q Consensus 372 ~i~~i~~~~~~~l~~~~~~~~--p~v~vGEfg~~~~~~~~~~~-~~-~~~~-~~ql~~~~~~~~Gw~~W~~k~ 439 (535)
..+.+..........+..... .++.+.||+..........+ .+ -.|+ +..++.....--+..||++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD 324 (486)
T PF01229_consen 252 DSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSD 324 (486)
T ss_dssp -HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS
T ss_pred hHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhh
Confidence 112222222221122223322 35899999876432111111 12 2332 334555443223578999864
No 32
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.64 E-value=4.2e-08 Score=81.34 Aligned_cols=78 Identities=27% Similarity=0.465 Sum_probs=49.5
Q ss_pred HHHHhCCCCcEEEEEeecC-CCCC---------CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCChhhhhcccCCC
Q 046395 278 LASRYADHPSLVAIELMNE-PKAP---------DLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLGGEWSELLSFASNL 347 (535)
Q Consensus 278 la~ry~~~p~V~~~el~NE-P~~~---------~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g~~~~~~~~~~~~~ 347 (535)
+.++|+++|+|++|||+|| |... ....+.+..|+++++..||+++|.++|..+ .++.+...+... ...
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g-~~~~~~~~~~~~-~~~ 78 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG-FWGGDWEDLEQL-QAE 78 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE---B--S-TTHHHHS---T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee-cccCCHHHHHHh-chh
Confidence 4678999999999999999 7621 113478899999999999999999997654 343333334333 224
Q ss_pred CcEEEEEeec
Q 046395 348 SRVVIDVHFY 357 (535)
Q Consensus 348 ~n~v~d~H~Y 357 (535)
.-.++++|.|
T Consensus 79 ~~DvisfH~Y 88 (88)
T PF12876_consen 79 NLDVISFHPY 88 (88)
T ss_dssp T-SSEEB-EE
T ss_pred cCCEEeeecC
Confidence 5678999998
No 33
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.63 E-value=4e-07 Score=93.55 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
++.++.||++|+|+|-++|.| ...+|.++. |+-+....|+++|+.|+++||+|||-.-..- ...++. .|.+.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W-~~he~~~g~-~df~g~~dl~~f~~~a~~~gl~vilrpGpyi--~aE~~~----gG~P~ 98 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPW-NLHEPEEGQ-FDFTGNRDLDRFLDLAQENGLYVILRPGPYI--CAEWDN----GGLPA 98 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--H-HHHSSBTTB----SGGG-HHHHHHHHHHTT-EEEEEEES-----TTBGG----GG--G
T ss_pred HHHHHHHHhCCcceEEEeccc-cccCCCCCc-ccccchhhHHHHHHHHHHcCcEEEeccccee--cccccc----hhhhh
Confidence 899999999999999999987 677888876 8777778899999999999999998643110 000110 11222
Q ss_pred C------------ChHHHHHHHHHHHHHHHHhCC-----CCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCc
Q 046395 263 W------------SDSDIQETVAIIDFLASRYAD-----HPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSA 325 (535)
Q Consensus 263 W------------~~~~~~~~~~~~~~la~ry~~-----~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~ 325 (535)
| ++.+.+...++++.|++..+. .-.||+.+|-||.... ..-+.|++.+.++.++.....
T Consensus 99 Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~----~~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 99 WLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY----GTDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp GGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT----SS-HHHHHHHHHHHHHTT-SS
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC----cccHhHHHHHHHHHHHhhCcc
Confidence 2 156777777777777775433 3469999999998732 233677888888888887774
Q ss_pred EEEE
Q 046395 326 YVIL 329 (535)
Q Consensus 326 ~ii~ 329 (535)
.+..
T Consensus 175 ~~~~ 178 (319)
T PF01301_consen 175 VLLY 178 (319)
T ss_dssp SBEE
T ss_pred ceee
Confidence 4444
No 34
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.62 E-value=1.2e-07 Score=89.53 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=51.4
Q ss_pred CCceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEEeeCCcEEEeecCCCeEEEeccCCCCC
Q 046395 16 DGTQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFRLSNKQFIGLENQGNKLVAVSATEKFP 95 (535)
Q Consensus 16 ~~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~ 95 (535)
+-++|+||| .+|||||++.-| .|+|+++++ |++|+|.+..-+++.-.|...|++|+++.. .+.|+|++.+++..
T Consensus 37 ~~~~iafKs-~~GkYLs~Dk~G--~v~a~sdAi--Gp~E~f~~V~~~~~~a~~~~~~~~FLs~~~-~~~i~a~s~~a~~~ 110 (191)
T PF06229_consen 37 GDEKIAFKS-GHGKYLSCDKDG--IVSARSDAI--GPQEQFEPVFQDGKPALFSSSNNKFLSVDE-EGDIRADSKTAGEN 110 (191)
T ss_dssp SSS-EEEEE-TTS-BEEE-SSS--BEEE--SS----TTTBEEEE-STT--EEEE-TTS-BEEE-S-SS-EEE--S---TT
T ss_pred CCCceEeec-cCccEEEEcCCC--cEEEEeecC--CCceEEEEEECCCCeEEEecCCCeEEEEec-ccCeeeccccCCCC
Confidence 447899998 699999999766 899999999 999999999976655555558999999987 55599999999999
Q ss_pred CceEEEec
Q 046395 96 EPFQITRK 103 (535)
Q Consensus 96 e~f~~~~~ 103 (535)
|.+.|.-+
T Consensus 111 e~~~iR~~ 118 (191)
T PF06229_consen 111 EMIKIRSD 118 (191)
T ss_dssp T--EEEE-
T ss_pred ceEEEEEe
Confidence 99977665
No 35
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.53 E-value=5.9e-07 Score=84.74 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=58.6
Q ss_pred EEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEe-cCCeEEEEeeCCcEEEeecCCCeEEEeccCCCCCCceEE
Q 046395 22 LISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRI-NETFYNFRLSNKQFIGLENQGNKLVAVSATEKFPEPFQI 100 (535)
Q Consensus 22 ~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e~f~~ 100 (535)
|.++.+|.|.+||.=.- . -.|++.|.|-+.++ ++++|+||..+|+|++|+. .|.|+|++++.|+.|.|++
T Consensus 4 i~a~d~G~~t~~ePhd~------~--~~p~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk-~G~v~a~sdAiGp~E~f~~ 74 (191)
T PF06229_consen 4 IEALDNGLFTTGEPHDV------G--EGPDPRQVWVATRVPGDEKIAFKSGHGKYLSCDK-DGIVSARSDAIGPQEQFEP 74 (191)
T ss_dssp EEE-TTS-EEE----SS------S------TTT-EEEEE--SSS-EEEEETTS-BEEE-S-SSBEEE--SS--TTTBEEE
T ss_pred eeeeccCCccccCCCcC------C--CCCChhHeEEEEEecCCCceEeeccCccEEEEcC-CCcEEEEeecCCCceEEEE
Confidence 56677777777774221 1 23588999999999 8999999999999999998 8899999999999999999
Q ss_pred EecCCCCceeEEEe-cCCceEEEecccEEecC
Q 046395 101 TRKNGEPHRVRFRA-SNGYFLQAKSEMQVTAD 131 (535)
Q Consensus 101 ~~~~~~~~~v~I~~-~nG~flq~~~~~~v~a~ 131 (535)
|..++.. -+.. .|+.||.++...-+.++
T Consensus 75 V~~~~~~---a~~~~~~~~FLs~~~~~~i~a~ 103 (191)
T PF06229_consen 75 VFQDGKP---ALFSSSNNKFLSVDEEGDIRAD 103 (191)
T ss_dssp E-STT-----EEEE-TTS-BEEE-SSS-EEE-
T ss_pred EECCCCe---EEEecCCCeEEEEecccCeeec
Confidence 9976544 4445 99999998763334443
No 36
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.47 E-value=6.3e-06 Score=83.65 Aligned_cols=137 Identities=12% Similarity=0.136 Sum_probs=83.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc-c-CCC--C--------CC-----CCccchHHHHHHHHHHHHHcCCEEEEe-cCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA-Y-DPK--P--------PK-----PFVGGSLQALDNAFRWAQKYGMKVIVD-LHAL 244 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~-~-~p~--~--------~~-----~~~~~~l~~ld~~i~~a~~~Gi~VIld-lH~~ 244 (535)
+..++..|+.|||+||+-+.-... . .|. + +. .+++.+|+.+|++|+.|.++||.+.|- +|+.
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~ 112 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGC 112 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-HH
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 567889999999999997653211 1 110 0 00 145679999999999999999999654 4523
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 046395 245 RVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSS 324 (535)
Q Consensus 245 pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 324 (535)
+.....|. .+ .. .-..+...++++.|++||+..|+|+ |.|.||-. ....-.+.++++.+.||+.+|.
T Consensus 113 ~~~~~~Wg-~~----~~---~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~----~~~~~~~~w~~~~~~i~~~dp~ 179 (289)
T PF13204_consen 113 PYVPGTWG-FG----PN---IMPPENAERYGRYVVARYGAYPNVI-WILGGDYF----DTEKTRADWDAMARGIKENDPY 179 (289)
T ss_dssp HHH------------TT---SS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS------TTSSHHHHHHHHHHHHHH--S
T ss_pred cccccccc-cc----cc---CCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccC----CCCcCHHHHHHHHHHHHhhCCC
Confidence 22111111 00 00 1357889999999999999999999 99999982 1223466777889999999998
Q ss_pred cEEEEcCC
Q 046395 325 AYVILSNR 332 (535)
Q Consensus 325 ~~ii~~~~ 332 (535)
.++.+++.
T Consensus 180 ~L~T~H~~ 187 (289)
T PF13204_consen 180 QLITIHPC 187 (289)
T ss_dssp S-EEEEE-
T ss_pred CcEEEeCC
Confidence 88777753
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.43 E-value=5.9e-06 Score=76.73 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=95.1
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccC-----CCCC--CCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYD-----PKPP--KPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHS 254 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~-----p~~~--~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~s 254 (535)
++++|+.|++.|+++|=|- |.... |... ..+....-+.|+.+++.|.++||+|+|.|...+.- ...
T Consensus 22 W~~~~~~m~~~GidtlIlq---~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~----w~~ 94 (166)
T PF14488_consen 22 WREEFRAMKAIGIDTLILQ---WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDY----WDQ 94 (166)
T ss_pred HHHHHHHHHHcCCcEEEEE---EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchh----hhc
Confidence 3899999999999999652 11111 1110 11333456899999999999999999999854321 110
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNR 332 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~ 332 (535)
+... ...+....+++++.++|+.||++.||=|-.|+... + ..-...++.+.+.++++.++.+|++++-
T Consensus 95 ----~~~~---~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~--~-~~~~~~~~~l~~~lk~~s~~~Pv~ISpf 162 (166)
T PF14488_consen 95 ----GDLD---WEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY--N-WNAPERFALLGKYLKQISPGKPVMISPF 162 (166)
T ss_pred ----cCHH---HHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc--c-cchHHHHHHHHHHHHHhCCCCCeEEecC
Confidence 1111 24445567889999999999999999999999853 2 2336667777888889988888888763
No 38
>PLN03059 beta-galactosidase; Provisional
Probab=98.20 E-value=2.1e-05 Score=88.58 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
++-++.||++|+|+|-.-|.| .+.+|.+|. |+-.....|.++|+.|++.||+|||-.- |--...|+. .|.+.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~W-n~HEp~~G~-~dF~G~~DL~~Fl~la~e~GLyvilRpG--PYIcAEw~~----GGlP~ 133 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFW-NGHEPSPGN-YYFEDRYDLVKFIKVVQAAGLYVHLRIG--PYICAEWNF----GGFPV 133 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecc-cccCCCCCe-eeccchHHHHHHHHHHHHcCCEEEecCC--cceeeeecC----CCCch
Confidence 899999999999999999986 777888876 8877889999999999999999999432 111111111 12223
Q ss_pred C------------ChHHHHHHHHHHHHHHHHhCC-------CCcEEEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhcC
Q 046395 263 W------------SDSDIQETVAIIDFLASRYAD-------HPSLVAIELMNEPKAPDL-KLDSLKTYYKAGYDTVRKYS 322 (535)
Q Consensus 263 W------------~~~~~~~~~~~~~~la~ry~~-------~p~V~~~el~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~ 322 (535)
| ++.+.+...+++++|+.+.+. -..||+.+|-||-..... ....-+.|++.+.+..++.+
T Consensus 134 WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 134 WLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred hhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcC
Confidence 3 156777888888888877642 236889999999764210 00122678888888888888
Q ss_pred CCcEEEEcC
Q 046395 323 SSAYVILSN 331 (535)
Q Consensus 323 p~~~ii~~~ 331 (535)
-..+++.++
T Consensus 214 i~VPl~t~d 222 (840)
T PLN03059 214 TGVPWVMCK 222 (840)
T ss_pred CCcceEECC
Confidence 888777765
No 39
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.05 E-value=6.1e-05 Score=77.62 Aligned_cols=226 Identities=15% Similarity=0.244 Sum_probs=132.8
Q ss_pred HHHHHHHcCCCEEEeCCc-cccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEE---EecCC-CCCCCCCCCCCCCCCC
Q 046395 185 DFKFMSQNGLNAVRIPVG-WWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVI---VDLHA-LRVSQNGSPHSGSRDG 259 (535)
Q Consensus 185 D~~~ik~~G~N~VRipv~-~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VI---ldlH~-~pg~~ng~~~sg~~~~ 259 (535)
....+-..-||.+-..-. -|...+|.+|. | .++..|+++++|+++||.|- |-+|. .|. |...
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~-~---~~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~----w~~~----- 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPEPGR-F---NFESADAILDWARENGIKVRGHTLVWHSQTPD----WVFN----- 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESBTTB-E---E-HHHHHHHHHHHHTT-EEEEEEEEESSSS-H----HHHT-----
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCCCCc-c---CccchhHHHHHHHhcCcceeeeeEEEcccccc----eeee-----
Confidence 455555566777776421 24566776664 5 78999999999999999986 55564 121 1000
Q ss_pred CCCCCh----HHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC-----ChHHH-----HHHHHHHHHHHHhcCCCc
Q 046395 260 FQEWSD----SDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDL-----KLDSL-----KTYYKAGYDTVRKYSSSA 325 (535)
Q Consensus 260 ~~~W~~----~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~-----~~~~~-----~~~~~~~~~aIR~~~p~~ 325 (535)
...+.+ ...+...++++.+++||++...|.+|+++|||..... ....| ..|+..+++..|+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a 172 (320)
T PF00331_consen 93 LANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNA 172 (320)
T ss_dssp STTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCc
Confidence 011221 2567788999999999998778999999999997432 01112 258899999999999999
Q ss_pred EEEEcCCCC--CCh---------hhhhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCc
Q 046395 326 YVILSNRLG--GEW---------SELLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPL 394 (535)
Q Consensus 326 ~ii~~~~~g--~~~---------~~~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~ 394 (535)
.+++-+ |+ ... ..+..-..+-+.+-+..|+-.... .+.+. ..|..+... |.+
T Consensus 173 ~L~~ND-y~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-----------~~~i~----~~l~~~~~~-Gl~ 235 (320)
T PF00331_consen 173 KLFYND-YNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-----------PEQIW----NALDRFASL-GLP 235 (320)
T ss_dssp EEEEEE-SSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-----------HHHHH----HHHHHHHTT-TSE
T ss_pred EEEecc-ccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCC-----------HHHHH----HHHHHHHHc-CCc
Confidence 888843 32 110 111111234577889999875421 22222 234445433 567
Q ss_pred EEEeccCCCcCCCCC---CHHHHHHHHHHHHHHHhhCC----cceEEEeeeeC
Q 046395 395 SFVGEWSCEWEAEGA---SKRDYQRFAEAQLDVYGRAT----FGWAYWAYKFA 440 (535)
Q Consensus 395 v~vGEfg~~~~~~~~---~~~~~~~~~~~ql~~~~~~~----~Gw~~W~~k~~ 440 (535)
+.|+|+-........ ......++++..++.+-+.. -|-++|.+...
T Consensus 236 i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~ 288 (320)
T PF00331_consen 236 IHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDG 288 (320)
T ss_dssp EEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTT
T ss_pred eEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCC
Confidence 999999654322111 01122234444455554433 47888887664
No 40
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=4.1e-05 Score=87.09 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=78.7
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQ 261 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~ 261 (535)
.++|++.||++|+|+||.. ++ |+ . ....++|.++||+||-+....- | +.. ..
T Consensus 323 ~~~dl~lmk~~n~N~vRts-Hy-----P~--~----------~~~ydLcDelGllV~~Ea~~~~-------~-~~~-~~- 374 (808)
T COG3250 323 MERDLKLMKEANMNSVRTS-HY-----PN--S----------EEFYDLCDELGLLVIDEAMIET-------H-GMP-DD- 374 (808)
T ss_pred HHHHHHHHHHcCCCEEEec-CC-----CC--C----------HHHHHHHHHhCcEEEEecchhh-------c-CCC-CC-
Confidence 4789999999999999995 22 21 1 2367999999999999885320 0 000 11
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 262 EWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 262 ~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
++..+....-+++|.+|-++||+|+.|.+.||+..+. . ...++..+++.++...+...
T Consensus 375 ---~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~g~-~-------~~~~~~~~k~~d~~r~~~~~ 432 (808)
T COG3250 375 ---PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGHGS-N-------HWALYRWFKASDPTRPVQYE 432 (808)
T ss_pred ---cchhHHHHHHHHHHHHhccCCCcEEEEeccccccCcc-c-------cHHHHHHHhhcCCccceecc
Confidence 3567788888999999999999999999999987521 1 22345566667776665554
No 41
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.0036 Score=62.90 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=103.8
Q ss_pred ccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCC---CCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHH
Q 046395 204 WIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALR---VSQNGSPHSGSRDGFQEWS-DSDIQETVAIIDFLA 279 (535)
Q Consensus 204 w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~p---g~~ng~~~sg~~~~~~~W~-~~~~~~~~~~~~~la 279 (535)
|..++|.+|. | .|+.-|.+++-|++|||.+ |..+ .+|...+.++. .++ +...+...+.+..++
T Consensus 69 we~i~p~~G~-f---~Fe~AD~ia~FAr~h~m~l----hGHtLvW~~q~P~W~~~~-----e~~~~~~~~~~e~hI~tV~ 135 (345)
T COG3693 69 WEAIEPERGR-F---NFEAADAIANFARKHNMPL----HGHTLVWHSQVPDWLFGD-----ELSKEALAKMVEEHIKTVV 135 (345)
T ss_pred cccccCCCCc-c---CccchHHHHHHHHHcCCee----ccceeeecccCCchhhcc-----ccChHHHHHHHHHHHHHHH
Confidence 3455665553 5 6788999999999999986 4321 11222111110 122 456778889999999
Q ss_pred HHhCCCCcEEEEEeecCCCCCCCC--hHHH------HHHHHHHHHHHHhcCCCcEEEEcCCCC--CCh----------hh
Q 046395 280 SRYADHPSLVAIELMNEPKAPDLK--LDSL------KTYYKAGYDTVRKYSSSAYVILSNRLG--GEW----------SE 339 (535)
Q Consensus 280 ~ry~~~p~V~~~el~NEP~~~~~~--~~~~------~~~~~~~~~aIR~~~p~~~ii~~~~~g--~~~----------~~ 339 (535)
.||++ .|+.|++.|||...... ...| -+|++.++...|+.+|+..+++-+ |+ .+. ..
T Consensus 136 ~rYkg--~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ND-Y~ie~~~~kr~~~~nlI~~ 212 (345)
T COG3693 136 GRYKG--SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIND-YSIEGNPAKRNYVLNLIEE 212 (345)
T ss_pred HhccC--ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeec-ccccCChHHHHHHHHHHHH
Confidence 99999 59999999999863111 1122 247888999999999999877743 32 111 22
Q ss_pred hhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCCC
Q 046395 340 LLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCE 403 (535)
Q Consensus 340 ~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~ 403 (535)
+..-..+-+.+-+..|+=..+ . +. +..+ ..+....+. |-+++|+|.-..
T Consensus 213 LkekG~pIDgiG~QsH~~~~~----~--~~----~~~~----~a~~~~~k~-Gl~i~VTELD~~ 261 (345)
T COG3693 213 LKEKGAPIDGIGIQSHFSGDG----P--SI----EKMR----AALLKFSKL-GLPIYVTELDMS 261 (345)
T ss_pred HHHCCCCccceeeeeeecCCC----C--CH----HHHH----HHHHHHhhc-CCCceEEEeeee
Confidence 222224457788899933221 1 11 1111 124444455 666999999554
No 42
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.0061 Score=59.61 Aligned_cols=212 Identities=13% Similarity=0.158 Sum_probs=132.0
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
+.||+.|+..+. .||+ |- ..-..|..+..++.+.|++|+|-+.-.+..+
T Consensus 66 ~sDLe~l~~~t~-~IR~---------------Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~-------------- 114 (305)
T COG5309 66 ASDLELLASYTH-SIRT---------------YG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIH-------------- 114 (305)
T ss_pred HhHHHHhccCCc-eEEE---------------ee-ccchhhhhhHHHHHhcCceEEEEEeeccchh--------------
Confidence 689999999998 9998 21 1345678889999999999999776432111
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC--CChhh
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-DLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLG--GEWSE 339 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g--~~~~~ 339 (535)
...+. ..+..+ .-|..-+.|..+-+-||-... ..+..++.+++.++-.++.+.+-+..|...+.|- -+-.+
T Consensus 115 ---~~~~~--til~ay-~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~ 188 (305)
T COG5309 115 ---DAVEK--TILSAY-LPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPE 188 (305)
T ss_pred ---hhHHH--HHHHHH-hccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChH
Confidence 11121 222222 235667889999999998754 5678899999999999999888777766655552 11122
Q ss_pred hhcccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCCCcC-----CCCCCHHHH
Q 046395 340 LLSFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCEWE-----AEGASKRDY 414 (535)
Q Consensus 340 ~~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~~~-----~~~~~~~~~ 414 (535)
+.. ..+-++.-.|.|- ...+..+....+.....+.++... ....+++|+|-|=..+ ..-.+.++-
T Consensus 189 l~~---~SDfia~N~~aYw------d~~~~a~~~~~f~~~q~e~vqsa~-g~~k~~~v~EtGWPS~G~~~G~a~pS~anq 258 (305)
T COG5309 189 LCQ---ASDFIAANAHAYW------DGQTVANAAGTFLLEQLERVQSAC-GTKKTVWVTETGWPSDGRTYGSAVPSVANQ 258 (305)
T ss_pred Hhh---hhhhhhcccchhc------cccchhhhhhHHHHHHHHHHHHhc-CCCccEEEeeccCCCCCCccCCcCCChhHH
Confidence 222 2355677788882 233343333333222222233332 2225699999984322 222456667
Q ss_pred HHHHHHHHHHHhhCCcceEEEe-eeeCC
Q 046395 415 QRFAEAQLDVYGRATFGWAYWA-YKFAE 441 (535)
Q Consensus 415 ~~~~~~ql~~~~~~~~Gw~~W~-~k~~~ 441 (535)
..++++.+..+...++.-++-. |+..|
T Consensus 259 ~~~~~~i~~~~~~~G~d~fvfeAFdd~W 286 (305)
T COG5309 259 KIAVQEILNALRSCGYDVFVFEAFDDDW 286 (305)
T ss_pred HHHHHHHHhhhhccCccEEEeeeccccc
Confidence 7888888888877777665443 44444
No 43
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=97.46 E-value=0.0021 Score=57.53 Aligned_cols=105 Identities=19% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCCceeEEEEeecCcEEEEec-CCCceEEeccCCCCCCCCceeEEEEecCCeEEEEeeCCcEEEeecC------CCeEEE
Q 046395 15 LDGTQVQLISTKLKKYLTAEN-GSETILMANHNSSSTSSWQTFRLWRINETFYNFRLSNKQFIGLENQ------GNKLVA 87 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~a~~-~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~a 87 (535)
-||.-|.|+| ..||||+|+- |-+-.+--+|.+. -.-|.- +++.-+...+.||..-|.|+++.+. .|.-+.
T Consensus 5 ~d~~~VRLRS-~~~kYL~ADeDg~~Vs~~~~~~s~-na~W~V-e~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v~ 81 (142)
T PF04601_consen 5 PDGKHVRLRS-HHGKYLHADEDGEGVSQDRRGASL-NAAWTV-ERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRVV 81 (142)
T ss_pred CCCCEEEEEe-cCCCEEEEcCCCCeEEECCCCCCC-cceEEE-EEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEEE
Confidence 4799999999 9999999985 4444444444433 123322 2222224678899889999999764 122333
Q ss_pred ecc--CCCCCCceEEEecCCCCceeEEEecCCceEEEecc
Q 046395 88 VSA--TEKFPEPFQITRKNGEPHRVRFRASNGYFLQAKSE 125 (535)
Q Consensus 88 ~~~--~~~~~e~f~~~~~~~~~~~v~I~~~nG~flq~~~~ 125 (535)
+.. .+...-.|+-+|. ...|.++..+|.||.++++
T Consensus 82 Q~~~~~~d~~~~Wepvr~---g~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 82 QTDPDRLDSSVEWEPVRD---GFYVKLRHRSGRYLRANGG 118 (142)
T ss_pred ecCCccCCCCceEEEecC---CCEEEEEecCCceEEcCCC
Confidence 322 2222334555564 2479999999999999876
No 44
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.37 E-value=0.019 Score=59.80 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCEEEEecCCC-CCC--CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC-cEEEEEeecCCCCC
Q 046395 225 NAFRWAQKYGMKVIVDLHAL-RVS--QNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHP-SLVAIELMNEPKAP 300 (535)
Q Consensus 225 ~~i~~a~~~Gi~VIldlH~~-pg~--~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p-~V~~~el~NEP~~~ 300 (535)
.+++.|+++|+..++-+-.- |.- .||....+ ..+...-.+...+.|..|+..++++|+.+. .|-.++.+|||...
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~-~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGG-DDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S--SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCC-CccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCC
Confidence 37799999999988866543 331 22222111 111111125788999999999999995543 57778999999863
Q ss_pred ---------CCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 301 ---------DLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 301 ---------~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
..+......+++.+..++++.+.+..|+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~ 225 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISAC 225 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEec
Confidence 124567888999999999999988877775
No 45
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.03 E-value=0.00047 Score=73.70 Aligned_cols=40 Identities=28% Similarity=0.585 Sum_probs=36.1
Q ss_pred cCCCCcccHHHHHhhCCCCCC-----------CCceEEEecCCccCCccccC
Q 046395 487 PAYPTVMHVNQIRGILPSRVR-----------SKREDGIKNLKEFGDDYYRP 527 (535)
Q Consensus 487 ~~~~~~~~~~~i~~~lphr~p-----------~~~~~~~k~v~~~~~~~f~~ 527 (535)
+..+++|+.++|+++||||+| +.++++.|+|+ .||+||+|
T Consensus 315 ~~~~~~m~~~~I~~lLPHR~PmLLVDrIl~~e~~~i~a~k~Vs-~De~ff~G 365 (464)
T PRK13188 315 PNKEPILDINRIMKILPHRYPFLLVDKIIELGDTKIVGIKNVT-MNEPFFQG 365 (464)
T ss_pred CCCCCccCHHHHHHhCCCCCCeEEEEEEeEEeCCEEEEEEEcC-CCcHHhhc
Confidence 445667899999999999999 77899999999 99999997
No 46
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=97.00 E-value=0.18 Score=58.51 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEec---CCCCCCCC---CCC-------C----CCCCCCCCCC------ChHHHHHHHHHHH
Q 046395 220 LQALDNAFRWAQKYGMKVIVDL---HALRVSQN---GSP-------H----SGSRDGFQEW------SDSDIQETVAIID 276 (535)
Q Consensus 220 l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~n---g~~-------~----sg~~~~~~~W------~~~~~~~~~~~~~ 276 (535)
+..++++|+.|.++||+||+|+ |...++.. .++ + .|.......+ .+..++..++.++
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~ 482 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLV 482 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999 54432211 000 0 0100000001 1556677778888
Q ss_pred HHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 277 FLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 277 ~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
..++.|+=+ .. -++++..-. ..+++++.+++|+++|+.+ +++-.|
T Consensus 483 ~W~~ey~VD-GF-RfDlm~~~~---------~~f~~~~~~~l~~i~pdi~-l~GEgW 527 (898)
T TIGR02103 483 VWAKDYKVD-GF-RFDLMGHHP---------KAQMLAAREAIKALTPEIY-FYGEGW 527 (898)
T ss_pred HHHHHcCCC-EE-EEechhhCC---------HHHHHHHHHHHHHhCCCEE-EEecCC
Confidence 888878542 23 377776543 4577788888999999866 455455
No 47
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.90 E-value=0.12 Score=56.31 Aligned_cols=231 Identities=17% Similarity=0.187 Sum_probs=115.3
Q ss_pred HcCCCEEEeCCccccccC------CCCC----CCCc--cchHHHHHHHHHHHHHc--CCEEEEecCCCCCCCC--CC-CC
Q 046395 191 QNGLNAVRIPVGWWIAYD------PKPP----KPFV--GGSLQALDNAFRWAQKY--GMKVIVDLHALRVSQN--GS-PH 253 (535)
Q Consensus 191 ~~G~N~VRipv~~w~~~~------p~~~----~~~~--~~~l~~ld~~i~~a~~~--Gi~VIldlH~~pg~~n--g~-~~ 253 (535)
-+|++.+|+||+-=.+.. ..++ ..|. .+..+.+-.+|+.|.+. +|+++-.--.+|+-.. +. ..
T Consensus 111 G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g 190 (496)
T PF02055_consen 111 GIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNG 190 (496)
T ss_dssp TT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCS
T ss_pred CceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcC
Confidence 489999999997522211 1111 0111 11111112344544433 5899888888876331 11 11
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC-cEEEEEeecCCCCC----------CCChHHHHHHHHH-HHHHHHhc
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHP-SLVAIELMNEPKAP----------DLKLDSLKTYYKA-GYDTVRKY 321 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p-~V~~~el~NEP~~~----------~~~~~~~~~~~~~-~~~aIR~~ 321 (535)
.|...+.. .+++.+.+.+++.+..+.|+.+. .|-++-+-|||... ..+++..+.|.+. +..++++.
T Consensus 191 ~g~l~g~~--~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~ 268 (496)
T PF02055_consen 191 GGSLKGSL--GDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKA 268 (496)
T ss_dssp S-BBSCGT--TSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTS
T ss_pred CCccCCCC--CchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 12111211 13677788888888888888765 67888999999841 1245778889876 77899998
Q ss_pred CC--CcEEEE-cCCC-C-CCh-hhhhccc-CCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCc
Q 046395 322 SS--SAYVIL-SNRL-G-GEW-SELLSFA-SNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPL 394 (535)
Q Consensus 322 ~p--~~~ii~-~~~~-g-~~~-~~~~~~~-~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~ 394 (535)
++ +..|++ .+.+ . .++ ..++..+ ...--..+.+|.|.... ....++.+... .-...
T Consensus 269 ~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~-------~~~~l~~~h~~----------~P~k~ 331 (496)
T PF02055_consen 269 GLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDP-------SPQALDQVHNK----------FPDKF 331 (496)
T ss_dssp TT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS--------HCHHHHHHHHH----------STTSE
T ss_pred CCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCc-------hhhHHHHHHHH----------CCCcE
Confidence 76 555544 3322 1 111 2233221 22235679999996411 11122222211 11234
Q ss_pred EEEeccCCC-cCC----CCCCHHHHHHHHHHHHHHHhhCCcceEEEeeeeC
Q 046395 395 SFVGEWSCE-WEA----EGASKRDYQRFAEAQLDVYGRATFGWAYWAYKFA 440 (535)
Q Consensus 395 v~vGEfg~~-~~~----~~~~~~~~~~~~~~ql~~~~~~~~Gw~~W~~k~~ 440 (535)
++.+|-+.. +.. .....+.-.+|....+..+.....||+.|.+--+
T Consensus 332 l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD 382 (496)
T PF02055_consen 332 LLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALD 382 (496)
T ss_dssp EEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBE
T ss_pred EEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecC
Confidence 788887542 211 1111222345566666666655579999997543
No 48
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.89 E-value=0.032 Score=55.05 Aligned_cols=134 Identities=18% Similarity=0.260 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCCCcEEEEEeecCCCCCC---CChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC--C-------CC-hhh
Q 046395 273 AIIDFLASRYADHPSLVAIELMNEPKAPD---LKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL--G-------GE-WSE 339 (535)
Q Consensus 273 ~~~~~la~ry~~~p~V~~~el~NEP~~~~---~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~--g-------~~-~~~ 339 (535)
..++.+.+. ++.+-.+..+|||.... .+++.....+++.++.+|. +... ++++.. . .+ +..
T Consensus 54 ~~~~~v~~~---~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~-l~sPa~~~~~~~~~~g~~Wl~~ 127 (239)
T PF11790_consen 54 DWLANVQNA---HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVK-LGSPAVAFTNGGTPGGLDWLSQ 127 (239)
T ss_pred HHHHHHHhh---ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcE-EECCeecccCCCCCCccHHHHH
Confidence 344444444 33455567899999753 4566777777777777774 3333 233211 1 11 234
Q ss_pred hhcccC-CCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccCCCcCCCCCCHHHHHHHH
Q 046395 340 LLSFAS-NLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCEWEAEGASKRDYQRFA 418 (535)
Q Consensus 340 ~~~~~~-~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~~~~~~~~~~~~~~~~ 418 (535)
++.... +..-.++++|.|.. +.+...+. +..+.+..+.||+|+|||+.......+.+.-..|+
T Consensus 128 F~~~~~~~~~~D~iavH~Y~~--------~~~~~~~~--------i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl 191 (239)
T PF11790_consen 128 FLSACARGCRVDFIAVHWYGG--------DADDFKDY--------IDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFL 191 (239)
T ss_pred HHHhcccCCCccEEEEecCCc--------CHHHHHHH--------HHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHH
Confidence 443323 45778999999922 12222222 22232233467999999976544445667778899
Q ss_pred HHHHHHHhhC
Q 046395 419 EAQLDVYGRA 428 (535)
Q Consensus 419 ~~ql~~~~~~ 428 (535)
+..+..+++.
T Consensus 192 ~~~~~~ld~~ 201 (239)
T PF11790_consen 192 RQALPWLDSQ 201 (239)
T ss_pred HHHHHHHhcC
Confidence 8888888754
No 49
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=96.89 E-value=0.00096 Score=60.60 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=33.3
Q ss_pred CcccHHHHHhhCCCCCC------------CCceEEEecCCccCCccccCC
Q 046395 491 TVMHVNQIRGILPSRVR------------SKREDGIKNLKEFGDDYYRPS 528 (535)
Q Consensus 491 ~~~~~~~i~~~lphr~p------------~~~~~~~k~v~~~~~~~f~~~ 528 (535)
..|+..+|.++||||+| +.++++.|+|+ .|++||+|-
T Consensus 5 ~~~~~~~i~~~lPhr~p~l~vD~i~~~~~~~~~~~~~~v~-~d~~~~~gh 53 (147)
T PRK00006 5 MMLDIEEILKLLPHRYPFLLVDRVLELEPGKSIVAIKNVT-INEPFFQGH 53 (147)
T ss_pred cccCHHHHHHhCCCCCCeeeEEEEEEEcCCCEEEEEEEec-CCCccccCC
Confidence 36789999999999999 57899999999 999999963
No 50
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.68 E-value=0.29 Score=50.12 Aligned_cols=247 Identities=16% Similarity=0.309 Sum_probs=122.9
Q ss_pred HHHHHHHHHcCCCEEEeCCccc---cccCCC-CCCC-C--ccchHHHHHHHHHHHHHcCCEEEEecCCCCC---------
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWW---IAYDPK-PPKP-F--VGGSLQALDNAFRWAQKYGMKVIVDLHALRV--------- 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w---~~~~p~-~~~~-~--~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg--------- 246 (535)
++-+++|++-|+|+|=|-|-=. ...... +... . .......++.+++.|+++|||+|-=+..+..
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe 95 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPE 95 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChh
Confidence 6889999999999999866310 000000 0000 0 1123467899999999999999965543210
Q ss_pred ----CCCCCCCCCCCCCCCCCC----hHHHHHHHHHHHHHHHH--------hCCCCc--EEEEEeecCCCCCCCChHHHH
Q 046395 247 ----SQNGSPHSGSRDGFQEWS----DSDIQETVAIIDFLASR--------YADHPS--LVAIELMNEPKAPDLKLDSLK 308 (535)
Q Consensus 247 ----~~ng~~~sg~~~~~~~W~----~~~~~~~~~~~~~la~r--------y~~~p~--V~~~el~NEP~~~~~~~~~~~ 308 (535)
..+|..+.. .....|- ++.++..+++.+++|+. |-..|. ...--.+.++.......+.+.
T Consensus 96 ~av~~~~G~~w~d--~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~ 173 (316)
T PF13200_consen 96 WAVKTKDGSVWRD--NEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAIT 173 (316)
T ss_pred hEEECCCCCcccC--CCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHH
Confidence 001110000 0112343 66777777888887763 111222 000001222222112457899
Q ss_pred HHHHHHHHHHHhcCCCcEEEE-c--------CCCCCChhhhhcccCCCCcEEEEEeecCcCC-Cc-ccCCChhhh-HHHH
Q 046395 309 TYYKAGYDTVRKYSSSAYVIL-S--------NRLGGEWSELLSFASNLSRVVIDVHFYNLFW-DN-FNKMSVQQN-IDYI 376 (535)
Q Consensus 309 ~~~~~~~~aIR~~~p~~~ii~-~--------~~~g~~~~~~~~~~~~~~n~v~d~H~Y~~~~-~~-~~~~~~~~~-i~~i 376 (535)
.|++.+.+.+++.+...-+-+ + ...|+++..+... -.+++.=.|+... .+ |.-..++.+ .+.+
T Consensus 174 ~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~-----vD~IsPMiYPSh~~~g~~g~~~P~~~PY~~v 248 (316)
T PF13200_consen 174 DFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEY-----VDYISPMIYPSHYGPGFFGIDKPDLEPYEIV 248 (316)
T ss_pred HHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhhh-----CCEEEecccccccCcccCCCCCcccChHHHH
Confidence 999999999998865432211 1 1234666655433 3445555554321 11 111111111 2222
Q ss_pred HHhhhHHHHHHhhcCCCcE---EEeccCCCcCCCCCCHHHH-HHHHHHHHHHHhhCC-cceEEEeee
Q 046395 377 YRQRSSDLRNVTTSDGPLS---FVGEWSCEWEAEGASKRDY-QRFAEAQLDVYGRAT-FGWAYWAYK 438 (535)
Q Consensus 377 ~~~~~~~l~~~~~~~~p~v---~vGEfg~~~~~~~~~~~~~-~~~~~~ql~~~~~~~-~Gw~~W~~k 438 (535)
..........+.....+++ ++--|...|... ....| ...+++|++.....+ -||++|.-.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~--~~~~Yg~~ev~aQI~A~~d~g~~~~llWna~ 313 (316)
T PF13200_consen 249 YRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGK--NYKEYGPEEVRAQIQALKDAGIEGWLLWNAS 313 (316)
T ss_pred HHHHHHHHHHhhcCCCCCeEeccccccccccccc--CccccCHHHHHHHHHHHHHcCCCeEEEECCC
Confidence 2222221122221111222 566666655322 12233 456888888887755 499999743
No 51
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.019 Score=62.93 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
++-++.+|+.|+|+|-..|.| ...+|.+++ |+-...-.|.+.|..|++.|++|+|-+- |--+..|++. |.+.
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfW-n~Hep~~g~-y~FsG~~DlvkFikl~~~~GLyv~LRiG--PyIcaEw~~G----G~P~ 123 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFW-NLHEPSPGK-YDFSGRYDLVKFIKLIHKAGLYVILRIG--PYICAEWNFG----GLPW 123 (649)
T ss_pred HHHHHHHHhcCCceeeeeeec-ccccCCCCc-ccccchhHHHHHHHHHHHCCeEEEecCC--CeEEecccCC----Ccch
Confidence 899999999999999999987 677888887 6655556666779999999999999654 2222223222 2222
Q ss_pred CC------------hHHHHHHHHHHHHHHHH----h-CCCCcEEEEEeecCCC
Q 046395 263 WS------------DSDIQETVAIIDFLASR----Y-ADHPSLVAIELMNEPK 298 (535)
Q Consensus 263 W~------------~~~~~~~~~~~~~la~r----y-~~~p~V~~~el~NEP~ 298 (535)
|. +.+..+..++++.|..+ | ++-.-||.-++-||-.
T Consensus 124 wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 124 WLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 21 44566666677666663 2 3333577799999976
No 52
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=96.57 E-value=0.0054 Score=62.50 Aligned_cols=146 Identities=17% Similarity=0.230 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCCEEEeCCcccccc-------------------CCC------------CCCC----CccchHHHHHHHH
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAY-------------------DPK------------PPKP----FVGGSLQALDNAF 227 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~-------------------~p~------------~~~~----~~~~~l~~ld~~i 227 (535)
|++|+.|+=.|+|..=.+++-+... .|. =++| +.+...+.=++++
T Consensus 22 EreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq~kIl 101 (333)
T PF05089_consen 22 EREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQKKIL 101 (333)
T ss_dssp HHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998877532110 010 0112 3344566678899
Q ss_pred HHHHHcCCEEEEecCC--CCCCC---CCCC---CCCCCCCC--CCC----ChHHHHHHHHHHHHHHHHhCCCCcEEEEEe
Q 046395 228 RWAQKYGMKVIVDLHA--LRVSQ---NGSP---HSGSRDGF--QEW----SDSDIQETVAIIDFLASRYADHPSLVAIEL 293 (535)
Q Consensus 228 ~~a~~~Gi~VIldlH~--~pg~~---ng~~---~sg~~~~~--~~W----~~~~~~~~~~~~~~la~ry~~~p~V~~~el 293 (535)
+..++.||.+||=-.. .|..- .+.. ..+.-.+. +.| .+-..+-...++++..+.|+ ..++.+-++
T Consensus 102 ~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~yG-~~~~Y~~D~ 180 (333)
T PF05089_consen 102 DRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLYG-TDHIYAADP 180 (333)
T ss_dssp HHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH----SEEE--T
T ss_pred HHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhcC-CCceeCCCc
Confidence 9999999999984431 12100 0000 00000011 011 14566777889999999998 678999999
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 046395 294 MNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 294 ~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~ 329 (535)
+||-..+......+....+.+++++++.||+.+-++
T Consensus 181 FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvm 216 (333)
T PF05089_consen 181 FNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVM 216 (333)
T ss_dssp TTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEE
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999887666667799999999999999999987555
No 53
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.024 Score=59.64 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc-----------------------------cCC--CCCCCCcc----chHHHHHHHH
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA-----------------------------YDP--KPPKPFVG----GSLQALDNAF 227 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~-----------------------------~~p--~~~~~~~~----~~l~~ld~~i 227 (535)
|..+++|+=.|||.+=.|.+-++. +.. .-++|... ..+-.-+++|
T Consensus 81 eR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~LqkrIi 160 (666)
T KOG2233|consen 81 EREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQKRII 160 (666)
T ss_pred HhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999888543210 000 00122222 2344447899
Q ss_pred HHHHHcCCEEEEecCC--CC--------CCC----CCCCCCCCCCCCCC-----CChHHHHHHHHHHHHHHHHhCCCCcE
Q 046395 228 RWAQKYGMKVIVDLHA--LR--------VSQ----NGSPHSGSRDGFQE-----WSDSDIQETVAIIDFLASRYADHPSL 288 (535)
Q Consensus 228 ~~a~~~Gi~VIldlH~--~p--------g~~----ng~~~sg~~~~~~~-----W~~~~~~~~~~~~~~la~ry~~~p~V 288 (535)
+...+.||.+||--.+ .| .+. ..|.+.-++ -.|. .++-.++-...+++.+.+.|++..+|
T Consensus 161 drm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~-~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tni 239 (666)
T KOG2233|consen 161 DRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSR-YSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNI 239 (666)
T ss_pred HHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcc-eeeeEEccCCcchHHHHHHHHHHHHHHHhCCcccc
Confidence 9999999999986542 22 111 112221111 1111 12456777789999999999998899
Q ss_pred EEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 289 VAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 289 ~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
..-+.+||..++...++-++.-..++|++.+++|++.+-++.
T Consensus 240 y~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQ 281 (666)
T KOG2233|consen 240 YSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQ 281 (666)
T ss_pred cccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeee
Confidence 999999999987777888999999999999999999876553
No 54
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=96.19 E-value=0.023 Score=53.95 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=80.4
Q ss_pred CCCceeEEEEeecCcEEEEecCCCceEEecc-CCCCCCCCceeEEEEecCCeEEEEeeCCcEEEeecCCCeEEEeccCCC
Q 046395 15 LDGTQVQLISTKLKKYLTAENGSETILMANH-NSSSTSSWQTFRLWRINETFYNFRLSNKQFIGLENQGNKLVAVSATEK 93 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~a~~~g~~~~~anr-~~~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~ 93 (535)
|-| .|.+. +.-|.||.|+--|...|-+-. ....|.+=|.|.+..++++++.|++.=|+|++++. ++-|++.+.+.|
T Consensus 46 ~~g-~v~ie-~~~~~yl~a~dng~ft~g~ph~~~~gp~p~e~f~avki~dsrIaLKsGyGKYlsins-dglvvg~qeAvG 122 (246)
T KOG3962|consen 46 IEG-TVAIE-IDDGTYLGAMDNGLFTLGAPHDEVDGPEPEEQFMAVKISDSRIALKSGYGKYLSINS-DGLVVGRQEAVG 122 (246)
T ss_pred eeE-EEEEE-ecCceEEEEEecCceeeccCCccccCCCchhhEEEEEccCceEEecccccceeeecC-CccEEEehhhcC
Confidence 345 77777 777999987755555555543 33456788999999999999999999999999998 888999999999
Q ss_pred CCCceEEEecCCCCceeEEEecCCceEEEe
Q 046395 94 FPEPFQITRKNGEPHRVRFRASNGYFLQAK 123 (535)
Q Consensus 94 ~~e~f~~~~~~~~~~~v~I~~~nG~flq~~ 123 (535)
.-|.|.-|-- .+++-+-+.||.|...+
T Consensus 123 ~~EQw~~vFq---~~r~a~~as~s~~~~~~ 149 (246)
T KOG3962|consen 123 SREQWEPVFQ---EGRMALLASNSCFIRCN 149 (246)
T ss_pred cHhhchhhhh---ccceEEeeccceeEEec
Confidence 9999875553 24566777777776553
No 55
>PLN02161 beta-amylase
Probab=96.16 E-value=0.073 Score=56.88 Aligned_cols=125 Identities=17% Similarity=0.327 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEecCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMK--VIVDLHALRVSQNGSPHSGSRDGF 260 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~--VIldlH~~pg~~ng~~~sg~~~~~ 260 (535)
+..++.||++|+.-|=++| ||...+...+..| .|..+.++++.+++.||+ ||+.+|.+.|...+. .+ ..-
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~--~~--IpL 191 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEF---KWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGK--GG--ISL 191 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCc--cC--ccC
Confidence 7899999999999999999 8888887655568 899999999999999998 566778764422111 00 112
Q ss_pred CCCChHHHHHHHHHHHHHHHH-----hCC-----CCcEEEEEeecCCCCCCCC-hHHHHHHHHHHHHHHHhcCCCcE
Q 046395 261 QEWSDSDIQETVAIIDFLASR-----YAD-----HPSLVAIELMNEPKAPDLK-LDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 261 ~~W~~~~~~~~~~~~~~la~r-----y~~-----~p~V~~~el~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
+.| +..+.+. |+| ++.-+.+.+-|+|...+.+ .+.+.+|++...+.....-...+
T Consensus 192 P~W-----------V~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~~~I 257 (531)
T PLN02161 192 PLW-----------IREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIGNVI 257 (531)
T ss_pred CHH-----------HHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhcCce
Confidence 222 1111111 332 2356678899999876544 47888888888887777654444
No 56
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.15 E-value=0.19 Score=56.51 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCEEEe-CCccccc-----cCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC--C
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGWWIA-----YDPKPPKPF--VGGSLQALDNAFRWAQKYGMKVIVDL---HALRVSQ--N 249 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~w~~-----~~p~~~~~~--~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~--n 249 (535)
++-++.|+++|+|+|=| ||..... .++...-.. .-+..+.|+++|+.|.++||+||||+ |..+... .
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence 44459999999999998 8743110 111100000 01457899999999999999999998 4432211 0
Q ss_pred ---C---CCCCCCC-CCCCCCC--------hHHHHHHHHHHHHHHHHhCCCC-------cEEEEEeecCCCC--C----C
Q 046395 250 ---G---SPHSGSR-DGFQEWS--------DSDIQETVAIIDFLASRYADHP-------SLVAIELMNEPKA--P----D 301 (535)
Q Consensus 250 ---g---~~~sg~~-~~~~~W~--------~~~~~~~~~~~~~la~ry~~~p-------~V~~~el~NEP~~--~----~ 301 (535)
+ +.+.... .....|. ++.++..++.++..++.|+=+- .++.+.-..++.. + .
T Consensus 240 ~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~ 319 (613)
T TIGR01515 240 EFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGG 319 (613)
T ss_pred ccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCC
Confidence 0 0000000 0112232 6777888888888888775321 1221111122210 0 0
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 302 LKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 302 ~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
.....-..|.+++.+.||+..|+.++|-+
T Consensus 320 ~~~~~~~~fl~~~~~~v~~~~p~~~liaE 348 (613)
T TIGR01515 320 RENLEAVDFLRKLNQTVYEAFPGVVTIAE 348 (613)
T ss_pred cCChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 11123467999999999999998877664
No 57
>PLN02801 beta-amylase
Probab=96.09 E-value=0.05 Score=58.09 Aligned_cols=60 Identities=28% Similarity=0.630 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKV--IVDLHALRV 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~V--IldlH~~pg 246 (535)
+..++.||++|+.-|=++| ||...+...+..| .|..++++++.+++.||++ |+.+|.+.|
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 6899999999999999999 8888887655558 7999999999999999985 677787543
No 58
>PLN02877 alpha-amylase/limit dextrinase
Probab=96.08 E-value=2.2 Score=49.97 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEec---CCCCCCC----CCCCC-----------CCCCCCC--C-CCC---hHHHHHHHHHH
Q 046395 220 LQALDNAFRWAQKYGMKVIVDL---HALRVSQ----NGSPH-----------SGSRDGF--Q-EWS---DSDIQETVAII 275 (535)
Q Consensus 220 l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~----ng~~~-----------sg~~~~~--~-~W~---~~~~~~~~~~~ 275 (535)
...++++|+.|.++||+||+|+ |....+. +..+. .|..... + ... +..++..++.+
T Consensus 465 I~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 5679999999999999999998 5432111 11100 1100000 0 001 34556677888
Q ss_pred HHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 276 DFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 276 ~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
+.-++.|+=+ . .-|+++..-.. .+....+..++++....+.++...+++++-+|
T Consensus 545 ~yW~~ey~VD-G-FRFDlmg~i~~--~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW 598 (970)
T PLN02877 545 LNWAVNYKVD-G-FRFDLMGHLMK--RTMVRAKDALQSLTLERDGVDGSSIYLYGEGW 598 (970)
T ss_pred HHHHHHhCCC-E-EEEEccccccH--HHHHHHHHHHHHHhhhhcccCCCceEEEEeCC
Confidence 8888888542 2 23788877542 12223333333333333344544556677666
No 59
>PLN00197 beta-amylase; Provisional
Probab=96.03 E-value=0.05 Score=58.59 Aligned_cols=60 Identities=15% Similarity=0.469 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEecCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMK--VIVDLHALRV 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~--VIldlH~~pg 246 (535)
+..++.||++|+.-|=++| ||...+...+..| .|..+.++++.+++.||+ ||+.+|.+.|
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 6899999999999999999 8888887655568 799999999999999998 5667787543
No 60
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.01 E-value=0.27 Score=55.66 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCCEEEe-CCcccc-----ccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC--C
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGWWI-----AYDPKPPKPF--VGGSLQALDNAFRWAQKYGMKVIVDL---HALRVSQ--N 249 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~w~-----~~~p~~~~~~--~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~--n 249 (535)
++-++.|+++|+|+|=| ||.-.. ..++...-.. .-+..+.|+++|+.|.++||+||||+ |..+... .
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~ 253 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLA 253 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccccc
Confidence 44469999999999986 552100 0111100000 11468899999999999999999998 4322111 0
Q ss_pred CCCC------CCC-CCCCCCCC--------hHHHHHHHHHHHHHHHHhCCCCcEEEEEee-cC------------C--CC
Q 046395 250 GSPH------SGS-RDGFQEWS--------DSDIQETVAIIDFLASRYADHPSLVAIELM-NE------------P--KA 299 (535)
Q Consensus 250 g~~~------sg~-~~~~~~W~--------~~~~~~~~~~~~~la~ry~~~p~V~~~el~-NE------------P--~~ 299 (535)
.++. ... ......|. ++.++..++.++...+.|+=+- + -++.. +. | ..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG-~-R~D~~~~~~~~d~~~~~~~~~~~~~ 331 (633)
T PRK12313 254 YFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDG-L-RVDAVSNMLYLDYDEEGEWTPNKYG 331 (633)
T ss_pred ccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcE-E-EEcChhhhhhcccccccCcCCcccC
Confidence 0110 000 00112332 6777777788887777764321 0 01100 11 0 11
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 300 PDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 300 ~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
...+. .-..+.+.+.+.||+..|+.++|-+
T Consensus 332 ~~~~~-~~~~fl~~~~~~v~~~~p~~~liaE 361 (633)
T PRK12313 332 GRENL-EAIYFLQKLNEVVYLEHPDVLMIAE 361 (633)
T ss_pred CCCCc-HHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 11111 3467899999999999998766554
No 61
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.98 E-value=0.51 Score=48.28 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=104.8
Q ss_pred HcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCC-CCCCCCCCCCCCCChHHHH
Q 046395 191 QNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNG-SPHSGSRDGFQEWSDSDIQ 269 (535)
Q Consensus 191 ~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng-~~~sg~~~~~~~W~~~~~~ 269 (535)
.+|+..+|+||.--.+.-. +. ++. ..+.|.. -+-+..+|++|+-.-...|.+... ...-|...+..- .+-..
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~-~d~-w~kels~-Ak~~in~g~ivfASPWspPa~Mktt~~~ngg~~g~Lk--~e~Ya 149 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GS-ADN-WYKELST-AKSAINPGMIVFASPWSPPASMKTTNNRNGGNAGRLK--YEKYA 149 (433)
T ss_pred ccCceEEEEEecccccccC--CC-cch-hhhhccc-chhhcCCCcEEEecCCCCchhhhhccCcCCccccccc--hhHhH
Confidence 4899999999963111100 11 110 1122221 123778999998877776654321 111111111111 12333
Q ss_pred HHHHHHHHHHHHhCCCC-cEEEEEeecCCCCCC---C---ChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCChhhh--
Q 046395 270 ETVAIIDFLASRYADHP-SLVAIELMNEPKAPD---L---KLDSLKTYYKAGYDTVRKYSSSAYVILSNRLGGEWSEL-- 340 (535)
Q Consensus 270 ~~~~~~~~la~ry~~~p-~V~~~el~NEP~~~~---~---~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g~~~~~~-- 340 (535)
.+.+++......++++. ++.+..+-|||...+ . .+++..+|+.+ ..+.+..+.-|++-.... +...+
T Consensus 150 ~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~q---yl~si~~~~rV~~pes~~-~~~~~~d 225 (433)
T COG5520 150 DYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQ---YLASINAEMRVIIPESFK-DLPNMSD 225 (433)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHH---hhhhhccccEEecchhcc-ccccccc
Confidence 44444444445555554 688899999998742 1 23344444443 334444344455433221 11111
Q ss_pred --h-cccCCCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcCCCcEEEeccC-CCcCCCCCCHHHHHH
Q 046395 341 --L-SFASNLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSDGPLSFVGEWS-CEWEAEGASKRDYQR 416 (535)
Q Consensus 341 --~-~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg-~~~~~~~~~~~~~~~ 416 (535)
+ ++..-..-.++..|.|..--. ++..- + . -.+..++.+|+.|-. .+++...+.++....
T Consensus 226 p~lnDp~a~a~~~ilg~H~Ygg~v~-----------~~p~~-l----a-k~~~~gKdlwmte~y~~esd~~s~dr~~~~~ 288 (433)
T COG5520 226 PILNDPKALANMDILGTHLYGGQVS-----------DQPYP-L----A-KQKPAGKDLWMTECYPPESDPNSADREALHV 288 (433)
T ss_pred ccccCHhHhcccceeEeeecccccc-----------cchhh-H----h-hCCCcCCceEEeecccCCCCCCcchHHHHHH
Confidence 1 221222445789999965211 11100 0 0 112235668998864 445544433322222
Q ss_pred HHHHHHHHHhh-CCcceEEEeeeeCC
Q 046395 417 FAEAQLDVYGR-ATFGWAYWAYKFAE 441 (535)
Q Consensus 417 ~~~~ql~~~~~-~~~Gw~~W~~k~~~ 441 (535)
.+.....+-+ ..-|..+|-+.-+.
T Consensus 289 -~~hi~~gm~~gg~~ayv~W~i~~~~ 313 (433)
T COG5520 289 -ALHIHIGMTEGGFQAYVWWNIRLDY 313 (433)
T ss_pred -HHHHHhhccccCccEEEEEEEeecc
Confidence 2222333323 33578889887764
No 62
>PLN02803 beta-amylase
Probab=95.87 E-value=0.062 Score=57.68 Aligned_cols=60 Identities=18% Similarity=0.439 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEecCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMK--VIVDLHALRV 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~--VIldlH~~pg 246 (535)
+..++.||++|+.-|=++| ||...+...+..| .|..+.++++.+++.||+ +|+.+|.+.|
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 6899999999999999999 8888887655558 799999999999999998 4667787644
No 63
>PLN02705 beta-amylase
Probab=95.83 E-value=0.063 Score=58.31 Aligned_cols=60 Identities=15% Similarity=0.427 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEecCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMK--VIVDLHALRV 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~--VIldlH~~pg 246 (535)
+..++.||++|+.-|=++| ||...+...+..| .|..+.++++.+++.||+ ||+.+|.+.|
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 6899999999999999999 8888887655558 799999999999999998 5677787644
No 64
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.083 Score=56.71 Aligned_cols=151 Identities=22% Similarity=0.233 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDG 259 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~ 259 (535)
..++--++-.++.|+|++|+ | .|+-|. -|..-+.|.+.||.|.=|+--+- + -
T Consensus 357 ~~~~~LL~Sv~e~~MN~lRV----W------GGGvYE------sd~FY~lad~lGilVWQD~MFAC---------A---l 408 (867)
T KOG2230|consen 357 AKTEFLLDSVAEVGMNMLRV----W------GGGVYE------SDYFYQLADSLGILVWQDMMFAC---------A---L 408 (867)
T ss_pred HHHHHHHHHHHHhCcceEEE----e------cCcccc------chhHHHHhhhccceehhhhHHHh---------h---c
Confidence 34455666678999999999 4 344343 34567889999999999886320 0 0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-------------CCChHHHHHHHHH-HHHHHHhcCCCc
Q 046395 260 FQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-------------DLKLDSLKTYYKA-GYDTVRKYSSSA 325 (535)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-------------~~~~~~~~~~~~~-~~~aIR~~~p~~ 325 (535)
+ .-.++..+-..+-++.=+.|.+.||+|+.|.--||-... ......+.-+|++ +.+...+.++.+
T Consensus 409 Y-Pt~~eFl~sv~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~sr 487 (867)
T KOG2230|consen 409 Y-PTNDEFLSSVREEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSR 487 (867)
T ss_pred c-cCcHHHHHHHHHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCC
Confidence 0 001355666666677778899999999999999997531 1122344555666 444555566777
Q ss_pred EEEEcC-CCC--CChhhhhcccCCCCcEEEEEeecCcC
Q 046395 326 YVILSN-RLG--GEWSELLSFASNLSRVVIDVHFYNLF 360 (535)
Q Consensus 326 ~ii~~~-~~g--~~~~~~~~~~~~~~n~v~d~H~Y~~~ 360 (535)
+.+++. .-| ...+...+- .+.+|..=|+|+|.-+
T Consensus 488 Pfi~SSPsNG~ete~e~~VS~-NP~dn~~GDVHfYdy~ 524 (867)
T KOG2230|consen 488 PFIVSSPSNGKETEPENYVSS-NPQDNQNGDVHFYDYT 524 (867)
T ss_pred CceecCCCCCcccCccccccC-CCccccCCceEeeehh
Confidence 766654 233 222222221 3455666789999654
No 65
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=95.80 E-value=0.33 Score=55.38 Aligned_cols=146 Identities=19% Similarity=0.233 Sum_probs=83.5
Q ss_pred hHHHHHHHHHcCCCEEEe-CCcc------ccccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRI-PVGW------WIAYDPKP---PKPFVGGSLQALDNAFRWAQKYGMKVIVDL---HALRVSQ 248 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRi-pv~~------w~~~~p~~---~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~ 248 (535)
+++-+..||++|+|+|=| ||.- |. .++.. ..+ .-+..+.|+++|+.|.++||+||||+ |......
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wG-Y~~~~~fa~~~-~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFG-YHVTNFFAVSS-RSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTL 330 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCC-cCcccCccccc-ccCCHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence 366799999999999987 4321 10 01100 000 11356889999999999999999998 3322111
Q ss_pred ---CCC-------CCCCCCCCCCCCC--------hHHHHHHHHHHHHHHHHhCCC-------CcEEEE------E---ee
Q 046395 249 ---NGS-------PHSGSRDGFQEWS--------DSDIQETVAIIDFLASRYADH-------PSLVAI------E---LM 294 (535)
Q Consensus 249 ---ng~-------~~sg~~~~~~~W~--------~~~~~~~~~~~~~la~ry~~~-------p~V~~~------e---l~ 294 (535)
+.+ .+.+.......|. ++.++..++.++...+.|+=+ .+++.. + =+
T Consensus 331 ~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~ 410 (758)
T PLN02447 331 DGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNY 410 (758)
T ss_pred ccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCc
Confidence 111 1111111112342 466666777777777766421 122210 1 12
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 295 NEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 295 NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
||-.+...+. .-..|++.+...|++..|+.++|.+
T Consensus 411 ~~~~g~~~d~-~a~~fL~~~N~~i~~~~p~~~~IAE 445 (758)
T PLN02447 411 NEYFGMATDV-DAVVYLMLANDLLHGLYPEAVTIAE 445 (758)
T ss_pred ccccCCccCh-HHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4433322233 3467999999999999999887664
No 66
>PLN02905 beta-amylase
Probab=95.64 E-value=0.078 Score=57.81 Aligned_cols=60 Identities=13% Similarity=0.475 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE--EEEecCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMK--VIVDLHALRV 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~--VIldlH~~pg 246 (535)
+..++.||++|+.-|=++| ||...+...+..| .|..+.++++.+++.||+ ||+.+|.+.|
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 7899999999999999999 8888887655568 899999999999999998 5677787644
No 67
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.51 E-value=0.48 Score=54.46 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=81.7
Q ss_pred hHHHHHHHHHcCCCEEEe-CCcccc-----ccCCCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC--
Q 046395 182 TEEDFKFMSQNGLNAVRI-PVGWWI-----AYDPKPPKPFV--GGSLQALDNAFRWAQKYGMKVIVDL---HALRVSQ-- 248 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRi-pv~~w~-----~~~p~~~~~~~--~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~-- 248 (535)
.++-+..|+++|+|+|=| ||.-.. ..++...-..+ -+..+.|.++|+.|.++||+||||+ |..+...
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 347 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGL 347 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccch
Confidence 344468999999999987 552110 01111000001 1467899999999999999999998 4322110
Q ss_pred CCCC------CCCC-CCCCCCCC--------hHHHHHHHHHHHHHHHHhCCCCcEEEEEe-ecC---------------C
Q 046395 249 NGSP------HSGS-RDGFQEWS--------DSDIQETVAIIDFLASRYADHPSLVAIEL-MNE---------------P 297 (535)
Q Consensus 249 ng~~------~sg~-~~~~~~W~--------~~~~~~~~~~~~~la~ry~~~p~V~~~el-~NE---------------P 297 (535)
..++ +... ......|. ++.++...+.++...++|+=+- +-++. -+. +
T Consensus 348 ~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG--~R~D~v~~~~~~~~~~~~g~~~~~~ 425 (726)
T PRK05402 348 ARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDG--LRVDAVASMLYLDYSRKEGEWIPNI 425 (726)
T ss_pred hccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcE--EEECCHHHhhhcccccccccccccc
Confidence 0000 1000 01122331 6677777777777777764321 11221 111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 298 KAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
.. +.....-..+.+.+...||+..|+.+++-+
T Consensus 426 ~~-~~~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 426 YG-GRENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred cc-CcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 11 111123467899999999999999876654
No 68
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=95.49 E-value=1.2 Score=49.73 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=80.0
Q ss_pred chHHHHHHHHHcCCCEEEe-CCcccc-----ccCCCCCCCCc----cchHHHHHHHHHHHHHcCCEEEEecC--CCCCCC
Q 046395 181 ITEEDFKFMSQNGLNAVRI-PVGWWI-----AYDPKPPKPFV----GGSLQALDNAFRWAQKYGMKVIVDLH--ALRVSQ 248 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRi-pv~~w~-----~~~p~~~~~~~----~~~l~~ld~~i~~a~~~Gi~VIldlH--~~pg~~ 248 (535)
..++-+..||++|+++|=| ||.-.. ..++. ..|. -+.-+.|.++|+.|.++||.||||+= ++|...
T Consensus 166 ~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~ 243 (628)
T COG0296 166 LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG 243 (628)
T ss_pred HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc
Confidence 3477888999999999997 553100 01111 0111 14678899999999999999999993 233222
Q ss_pred CCC---CCCCCCC-------CCCCCC--------hHHHHHHHHHHHHHHHHh---------------CCCCcEEEEEeec
Q 046395 249 NGS---PHSGSRD-------GFQEWS--------DSDIQETVAIIDFLASRY---------------ADHPSLVAIELMN 295 (535)
Q Consensus 249 ng~---~~sg~~~-------~~~~W~--------~~~~~~~~~~~~~la~ry---------------~~~p~V~~~el~N 295 (535)
++. +.+-... -...|. ++.+..++.-...-.+.| .+...=.+-.+.|
T Consensus 244 ~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n 323 (628)
T COG0296 244 NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPN 323 (628)
T ss_pred chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhccccc
Confidence 211 1110001 133554 233333333333333333 2222222335667
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 296 EPKAPDLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 296 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
|..+. ......++.+.+.+.|+...|..+
T Consensus 324 ~~ggr--~n~~a~efl~~~n~~i~~~~pg~~ 352 (628)
T COG0296 324 EYGGR--ENLEAAEFLRNLNSLIHEEEPGAM 352 (628)
T ss_pred ccCCc--ccHHHHHHhhhhhhhhcccCCCce
Confidence 77642 344678889999999998888664
No 69
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.48 E-value=0.35 Score=53.58 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCEEEe-CCcc------ccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCCCC-
Q 046395 184 EDFKFMSQNGLNAVRI-PVGW------WIAYDPKPPKPF--VGGSLQALDNAFRWAQKYGMKVIVDL---HALRVSQNG- 250 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRi-pv~~------w~~~~p~~~~~~--~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~ng- 250 (535)
+.++.|+++|+|+|=| ||.- |. .++...... .-+..+.|+++|+.|.++||+||||+ |..+.+..-
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~G-Y~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~ 193 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWG-YDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLP 193 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCC-CCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccccc
Confidence 4589999999999987 5521 10 111100000 11467899999999999999999998 433321100
Q ss_pred CCCC-CCCCCCCCCC-------h---HHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 046395 251 SPHS-GSRDGFQEWS-------D---SDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVR 319 (535)
Q Consensus 251 ~~~s-g~~~~~~~W~-------~---~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR 319 (535)
...+ -.......|. + ..++.+++.++..++.|+=+. . -+++...-.. . .-..+++++.+.+|
T Consensus 194 ~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDG-f-R~D~~~~~~~--~---~~~~~l~~~~~~~~ 266 (542)
T TIGR02402 194 RYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDG-L-RLDAVHAIAD--T---SAKHILEELAREVH 266 (542)
T ss_pred ccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcE-E-EEeCHHHhcc--c---cHHHHHHHHHHHHH
Confidence 0000 0001112232 3 666777777777777774321 1 1333322211 0 12468888889999
Q ss_pred hcCCC
Q 046395 320 KYSSS 324 (535)
Q Consensus 320 ~~~p~ 324 (535)
++.|+
T Consensus 267 ~~~p~ 271 (542)
T TIGR02402 267 ELAAE 271 (542)
T ss_pred HHCCC
Confidence 99887
No 70
>PLN02960 alpha-amylase
Probab=95.41 E-value=0.67 Score=53.37 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=83.9
Q ss_pred chHHHHHHHHHcCCCEEEe-CCcc------ccccCCCCCCCC----ccchHHHHHHHHHHHHHcCCEEEEec---CCCCC
Q 046395 181 ITEEDFKFMSQNGLNAVRI-PVGW------WIAYDPKPPKPF----VGGSLQALDNAFRWAQKYGMKVIVDL---HALRV 246 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRi-pv~~------w~~~~p~~~~~~----~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg 246 (535)
++++-+..|+++|+|+|=| ||.- |. .++. ..| .-+..+.|+.+|+.|.++||+||||+ |..+.
T Consensus 418 ~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swG-Y~~~--~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 418 FTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVG-YKVT--NFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcc--cCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 3456799999999999987 4421 10 0110 001 01357899999999999999999998 44332
Q ss_pred CCCC----------CCCCCCCCCCCCCC--------hHHHHHHHHHHHHHHHHhCCC-------CcEEEEE--eecCCC-
Q 046395 247 SQNG----------SPHSGSRDGFQEWS--------DSDIQETVAIIDFLASRYADH-------PSLVAIE--LMNEPK- 298 (535)
Q Consensus 247 ~~ng----------~~~sg~~~~~~~W~--------~~~~~~~~~~~~~la~ry~~~-------p~V~~~e--l~NEP~- 298 (535)
..++ +.+.+.......|. ++.++..+..+....+.|+=+ .+++..+ ...++.
T Consensus 495 ~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~ 574 (897)
T PLN02960 495 EMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGD 574 (897)
T ss_pred cccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCc
Confidence 1111 11111111122343 566777777777777776532 1222111 001111
Q ss_pred ----CCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 299 ----APDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 299 ----~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
.....-..-..|++.+...|++..|+.++|.+
T Consensus 575 ~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAE 610 (897)
T PLN02960 575 LDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAE 610 (897)
T ss_pred ccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 00011124567888999999999998887764
No 71
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=95.39 E-value=0.022 Score=59.58 Aligned_cols=60 Identities=18% Similarity=0.516 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE--EEecCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKV--IVDLHALRV 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~V--IldlH~~pg 246 (535)
+..++.||++|+..|=++| ||...+...+..| .|..++++++.+++.||++ |+.+|.+.|
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~y---dWs~Y~~l~~~vr~~GLk~~~vmsfH~cGg 80 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQY---DWSGYRELFEMVRDAGLKLQVVMSFHQCGG 80 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSS
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEeeecCCC
Confidence 7999999999999999999 7888888755558 8999999999999999986 567787644
No 72
>smart00642 Aamy Alpha-amylase domain.
Probab=95.29 E-value=0.066 Score=49.76 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc--------cCCCCCCCCc--cchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA--------YDPKPPKPFV--GGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~--------~~p~~~~~~~--~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.+.++.|+++|+|+|-|+=.+... .++......+ -+..+.++++|+.|+++||+||+|+-
T Consensus 22 ~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 22 IEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 455779999999999984332111 1111100011 14679999999999999999999994
No 73
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.06 E-value=0.54 Score=52.87 Aligned_cols=136 Identities=14% Similarity=0.221 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCEEEe-CCcccc-------------ccCCCC----CCCCcc------chHHHHHHHHHHHHHcCCEEEE
Q 046395 184 EDFKFMSQNGLNAVRI-PVGWWI-------------AYDPKP----PKPFVG------GSLQALDNAFRWAQKYGMKVIV 239 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRi-pv~~w~-------------~~~p~~----~~~~~~------~~l~~ld~~i~~a~~~Gi~VIl 239 (535)
+-++.|+++|+|+|=| ||.-.. ..++.. ...|.. +..+.|+++|+.|.++||+|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999987 553110 011100 000100 1257899999999999999999
Q ss_pred ec---CCCCCCCCCCC-----------CCCCCCCCCCC-------ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 046395 240 DL---HALRVSQNGSP-----------HSGSRDGFQEW-------SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPK 298 (535)
Q Consensus 240 dl---H~~pg~~ng~~-----------~sg~~~~~~~W-------~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~ 298 (535)
|+ |...+....+. ..|.......| .+..++..++.++..+++|+=+ .. -+++...-
T Consensus 248 DvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iD-Gf-R~D~~~~~- 324 (605)
T TIGR02104 248 DVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNID-GF-RFDLMGIH- 324 (605)
T ss_pred EEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCC-EE-EEechhcC-
Confidence 98 54321111111 00100000011 1566777777777777777432 22 24555332
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 299 APDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
+ ..+++++.+++++..|+.+++-+
T Consensus 325 ----~----~~~~~~~~~~~~~~~p~~~ligE 348 (605)
T TIGR02104 325 ----D----IETMNEIRKALNKIDPNILLYGE 348 (605)
T ss_pred ----C----HHHHHHHHHHHHhhCCCeEEEEc
Confidence 1 33667778888888887775543
No 74
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.95 E-value=1.2 Score=50.87 Aligned_cols=144 Identities=15% Similarity=0.215 Sum_probs=82.6
Q ss_pred hHHHHHHHHHcCCCEEEe-CCc------cccccCCCCCCCC----ccchHHHHHHHHHHHHHcCCEEEEec---CCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRI-PVG------WWIAYDPKPPKPF----VGGSLQALDNAFRWAQKYGMKVIVDL---HALRVS 247 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRi-pv~------~w~~~~p~~~~~~----~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~ 247 (535)
.++-+..||++|+|+|=| ||. .|. .++. ..| .-+..+.+.++|+.|.++||+||||+ |..+..
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~--~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~ 348 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPL--GLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA 348 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCC--cCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccc
Confidence 356689999999999986 552 111 1111 001 11467899999999999999999998 322210
Q ss_pred C--CCCC------CCCCCC-CCCCCC--------hHHHHHHHHHHHHHHHHhCCCC-------cEEEEE--------eec
Q 046395 248 Q--NGSP------HSGSRD-GFQEWS--------DSDIQETVAIIDFLASRYADHP-------SLVAIE--------LMN 295 (535)
Q Consensus 248 ~--ng~~------~sg~~~-~~~~W~--------~~~~~~~~~~~~~la~ry~~~p-------~V~~~e--------l~N 295 (535)
. ..++ +...+. ....|. ++.++..++.+....+.|.=+- +++..+ +-|
T Consensus 349 ~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn 428 (730)
T PRK12568 349 HGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPN 428 (730)
T ss_pred cccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccccccccccc
Confidence 0 0111 110011 122342 5667777777777777664321 111111 123
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 296 EPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 296 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
+-.. ..+ ..-..|++++..+|++..|+.++|-+
T Consensus 429 ~~gg-~en-~ea~~Fl~~ln~~v~~~~P~~~~IAE 461 (730)
T PRK12568 429 AHGG-REN-LEAVAFLRQLNREIASQFPGVLTIAE 461 (730)
T ss_pred ccCC-ccC-hHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3211 111 23467999999999999998876654
No 75
>PRK10785 maltodextrin glucosidase; Provisional
Probab=94.74 E-value=0.76 Score=51.62 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEe-CCccccccCCCCCCCCc--------c--chHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGWWIAYDPKPPKPFV--------G--GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~w~~~~p~~~~~~~--------~--~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-++.|+++|+|+|=| ||.- . +. ...|+ + +..+.|+++|+.|+++||+||||+
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~-s---~s-~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFT-A---PS-VHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCccc-C---CC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46689999999999987 4421 1 11 11121 1 467899999999999999999999
No 76
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=94.73 E-value=0.21 Score=42.28 Aligned_cols=82 Identities=11% Similarity=0.194 Sum_probs=59.8
Q ss_pred CceeEEEEeecCcEEEEecCC---CceEEeccCCCCCCCCceeEEEEecCCeEEEEee-CCcEEEeecC---CCe-EEEe
Q 046395 17 GTQVQLISTKLKKYLTAENGS---ETILMANHNSSSTSSWQTFRLWRINETFYNFRLS-NKQFIGLENQ---GNK-LVAV 88 (535)
Q Consensus 17 ~~~~~~~~~~~~~~~~a~~~g---~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~-~~~~v~~~~~---~~~-~~a~ 88 (535)
+...+|+++..|+||.+..++ |+.|+.-.... ..-+.|+|.+.++++|.|+.. .++.+.+.+. +|+ |+--
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~--~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~~ 91 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNG--NDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQW 91 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSS--SGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEEE
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCC--CcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEEE
Confidence 457999999999999998775 67777766666 788999999999999999965 6788877642 222 4433
Q ss_pred cc-CCCCCCceEE
Q 046395 89 SA-TEKFPEPFQI 100 (535)
Q Consensus 89 ~~-~~~~~e~f~~ 100 (535)
.. .-+..+.|.|
T Consensus 92 ~~~~~~~~Q~W~l 104 (105)
T PF14200_consen 92 EYDNGSDNQQWKL 104 (105)
T ss_dssp E-STSSGGGEEEE
T ss_pred eCCCCCccCEEEe
Confidence 32 4455666654
No 77
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=94.59 E-value=0.055 Score=55.36 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCC
Q 046395 219 SLQALDNAFRWAQKYGMKVIVDLHALRV 246 (535)
Q Consensus 219 ~l~~ld~~i~~a~~~Gi~VIldlH~~pg 246 (535)
..+..|++.+-|.+-|+++|..|-+..|
T Consensus 107 t~~rwd~l~~F~~~tG~~liFgLNAL~g 134 (319)
T PF03662_consen 107 TMSRWDELNNFAQKTGLKLIFGLNALLG 134 (319)
T ss_dssp -----HHHHHHHHHHT-EEEEEE-TTTS
T ss_pred chhHHHHHHHHHHHhCCEEEEEecccCC
Confidence 3578899999999999999999987643
No 78
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.10 E-value=1.3 Score=53.14 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCCEEEe-CCc------cccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRI-PVG------WWIAYDPKP----PKPFVGGSLQALDNAFRWAQKYGMKVIVDL---HALRVSQ 248 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~------~w~~~~p~~----~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~ 248 (535)
++-++.||++|+|+|=| ||. .|- .++.. ...| +..+.|+++|+.|.++||+||||+ |..+...
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ry--Gt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRF--GHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCccc--CCHHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 45579999999999976 552 121 11110 0011 468899999999999999999998 3321110
Q ss_pred -----CC---CCCCCCC-CCCCCCC--------hHHHHHHHHHHHHHHHHhCCCC----c---EEEEE--------eecC
Q 046395 249 -----NG---SPHSGSR-DGFQEWS--------DSDIQETVAIIDFLASRYADHP----S---LVAIE--------LMNE 296 (535)
Q Consensus 249 -----ng---~~~sg~~-~~~~~W~--------~~~~~~~~~~~~~la~ry~~~p----~---V~~~e--------l~NE 296 (535)
.+ +.+.... .....|. ++.++..++.+....++|+=+- . ++..+ +-|+
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~ 925 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNR 925 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccc
Confidence 01 1111100 1123342 5667777777777777775432 1 11111 1122
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 297 PKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 297 P~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
-.+ ..+ ..-..|++++.+.|++..|..++|-+
T Consensus 926 ~gg-~en-~~ai~fl~~ln~~v~~~~p~~~~IAE 957 (1224)
T PRK14705 926 FGG-REN-LEAISFLQEVNATVYKTHPGAVMIAE 957 (1224)
T ss_pred cCC-ccC-hHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 221 112 23467999999999999998876653
No 79
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=94.02 E-value=0.37 Score=54.46 Aligned_cols=64 Identities=20% Similarity=0.387 Sum_probs=45.1
Q ss_pred hHHHHHHHHHcCCCEEEe-CCccccccC--------------CC----CCCCCcc-----chHHHHHHHHHHHHHcCCEE
Q 046395 182 TEEDFKFMSQNGLNAVRI-PVGWWIAYD--------------PK----PPKPFVG-----GSLQALDNAFRWAQKYGMKV 237 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRi-pv~~w~~~~--------------p~----~~~~~~~-----~~l~~ld~~i~~a~~~Gi~V 237 (535)
.+..|+.||++|+++|.| ||..+.... |. |...|.. ..+..++.+|+.+.++||.|
T Consensus 202 ~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~V 281 (697)
T COG1523 202 EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEV 281 (697)
T ss_pred cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEE
Confidence 345599999999999996 776433211 10 0011222 25889999999999999999
Q ss_pred EEec---CCCC
Q 046395 238 IVDL---HALR 245 (535)
Q Consensus 238 Ildl---H~~p 245 (535)
|||+ |.+-
T Consensus 282 ILDVVfNHTae 292 (697)
T COG1523 282 ILDVVFNHTAE 292 (697)
T ss_pred EEEEeccCccc
Confidence 9999 7653
No 80
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=93.89 E-value=2 Score=41.71 Aligned_cols=118 Identities=16% Similarity=0.246 Sum_probs=67.3
Q ss_pred ccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec
Q 046395 216 VGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN 295 (535)
Q Consensus 216 ~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N 295 (535)
.+.+++.+.++|..|.+.||++|= |-++ +.. +..=+++.+++|++-+++.++.=....-.+++|+|-
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQ-LAGY-------DVY-----YE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMD 157 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQ-LAGY-------DVY-----YEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMD 157 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEe-eccc-------eee-----eccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecc
Confidence 456899999999999999999974 2211 110 000014678888766655443222233578899999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC-----CCCCCh-hhhhcccCCCCcEEEEEeecCc
Q 046395 296 EPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSN-----RLGGEW-SELLSFASNLSRVVIDVHFYNL 359 (535)
Q Consensus 296 EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~-----~~g~~~-~~~~~~~~~~~n~v~d~H~Y~~ 359 (535)
-|.. .-+.+.....+.+++-...+..+ .|+.+. +++ ..+ ..-+..+|.-..
T Consensus 158 tpfm---------~sIsk~~~~~~~I~sP~f~vYPDiGNlsaw~ndv~~El---~lG-~~~I~aiHlKDT 214 (287)
T COG3623 158 TPFM---------NSISKWLKYDKYINSPWFTVYPDIGNLSAWNNDVQSEL---QLG-IDKIVAIHLKDT 214 (287)
T ss_pred cHHH---------HHHHHHHHHHHHhCCCcEEecCCcccHhhhhhhHHHHH---HcC-cCceEEEEeccc
Confidence 8873 12223344556667666655543 232221 222 122 334668887655
No 81
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=93.78 E-value=0.14 Score=51.52 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc----------cchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV----------GGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~----------~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+.++.||++|+|+|-|+=-+. .+.....|. -+..+.|.++|+.|+++||+||+|+
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~---~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE---SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE---SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc---cccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 3558899999999999843221 110011121 1578999999999999999999999
No 82
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=93.71 E-value=1.9 Score=51.49 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEec---CCCCCCC-----CCCCC----CCCC-----CCCCC-CChHHHHHHHHHHHHHHHH
Q 046395 220 LQALDNAFRWAQKYGMKVIVDL---HALRVSQ-----NGSPH----SGSR-----DGFQE-WSDSDIQETVAIIDFLASR 281 (535)
Q Consensus 220 l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~-----ng~~~----sg~~-----~~~~~-W~~~~~~~~~~~~~~la~r 281 (535)
.+.|+++|+.|+++||+||||+ |....+. .++.+ .|.. .+... ..+..++..++.++..++.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999998 5432111 00100 0100 00000 1156677778888888888
Q ss_pred hCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 046395 282 YADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 282 y~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~ 329 (535)
|+=+ . +-|+++..- + ..+++.+..++++++|+.+++-
T Consensus 634 y~VD-G-FRfDl~g~~-----d----~~~~~~~~~~l~~~dP~~~liG 670 (1111)
T TIGR02102 634 FKVD-G-FRFDMMGDH-----D----AASIEIAYKEAKAINPNIIMIG 670 (1111)
T ss_pred cCCc-E-EEEeccccC-----C----HHHHHHHHHHHHHhCcCEEEEE
Confidence 8542 2 236776431 2 2355666777888899765443
No 83
>PRK14706 glycogen branching enzyme; Provisional
Probab=93.48 E-value=3 Score=47.16 Aligned_cols=142 Identities=13% Similarity=0.185 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCEEEe-CCcc------ccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEec---CCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGW------WIAYDPKP----PKPFVGGSLQALDNAFRWAQKYGMKVIVDL---HALRVSQ 248 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~------w~~~~p~~----~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~ 248 (535)
++-+..||++|+|+|=| ||.- |. .++.. ...| +..+.|+++|+.|.++||+||||+ |..+. .
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wG-Y~~~~~~~~~~~~--g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~-~ 246 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWG-YQVTGYYAPTSRL--GTPEDFKYLVNHLHGLGIGVILDWVPGHFPTD-E 246 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCC-cCccccccccccc--CCHHHHHHHHHHHHHCCCEEEEEecccccCcc-h
Confidence 45458899999999986 4421 10 01100 0011 457899999999999999999998 43221 1
Q ss_pred CCC---C------CCCCCCC-CCCCC--------hHHHHHHHHHHHHHHHHhCCCC-------cEEEEE------eecCC
Q 046395 249 NGS---P------HSGSRDG-FQEWS--------DSDIQETVAIIDFLASRYADHP-------SLVAIE------LMNEP 297 (535)
Q Consensus 249 ng~---~------~sg~~~~-~~~W~--------~~~~~~~~~~~~~la~ry~~~p-------~V~~~e------l~NEP 297 (535)
++. + ......+ ...|. ++.++..++.++...+.|+=+. +++-++ +-|+.
T Consensus 247 ~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~ 326 (639)
T PRK14706 247 SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH 326 (639)
T ss_pred hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccccccc
Confidence 111 1 0000001 12232 5677777777777777664321 121111 11222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 298 KAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
.+ .....-..|++.+...||+..|+.++|-+
T Consensus 327 gg--~~n~~a~~fl~~ln~~v~~~~p~~~~iAE 357 (639)
T PRK14706 327 GG--RENLEAIAFLKRLNEVTHHMAPGCMMIAE 357 (639)
T ss_pred CC--cccHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 21 11234567899999999999998776653
No 84
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.38 E-value=0.86 Score=40.65 Aligned_cols=98 Identities=19% Similarity=0.298 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCEEEeCCc---cccccCCC--CCCCCccchHHHHHHHHHHHHHcCCEEEEecCC-C--------CC--
Q 046395 183 EEDFKFMSQNGLNAVRIPVG---WWIAYDPK--PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA-L--------RV-- 246 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~---~w~~~~p~--~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~-~--------pg-- 246 (535)
++-++.|++.|+|+|-+... -|...... +..|+.. .+.|.++|+.|++.||+|++-+-. . |.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~ 80 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWF 80 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCcee
Confidence 46678899999999999543 12222211 1123332 688999999999999999975521 1 21
Q ss_pred --CCCCCCCCCCCCCCCCCC-----hHHHHHHHHHHHHHHHHh
Q 046395 247 --SQNGSPHSGSRDGFQEWS-----DSDIQETVAIIDFLASRY 282 (535)
Q Consensus 247 --~~ng~~~sg~~~~~~~W~-----~~~~~~~~~~~~~la~ry 282 (535)
..+|....+.......|. ..+++...+.++++.++|
T Consensus 81 ~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 81 VRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 111111111111122232 567788899999999999
No 85
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.36 E-value=0.72 Score=47.39 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCEEEeCCccc------cccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEec--C--CCCCC-
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWW------IAYDPKP----PKPFVGGSLQALDNAFRWAQKYGMKVIVDL--H--ALRVS- 247 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w------~~~~p~~----~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl--H--~~pg~- 247 (535)
++-++.|+++|||+|=+-|-.. +-+.|.. +.+.....++.|..+|+.|+++||.|.-=+ . ..+.+
T Consensus 22 ~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~ 101 (311)
T PF02638_consen 22 DEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSH 101 (311)
T ss_pred HHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCchhh
Confidence 6888899999999997755321 1111111 111111258899999999999999986322 0 00000
Q ss_pred ---CCC-C---CCCCCC------CCCCCCC----hHHHHHHHHHHHHHHHHhCCCCcEEEEE--ee-------cC-----
Q 046395 248 ---QNG-S---PHSGSR------DGFQEWS----DSDIQETVAIIDFLASRYADHPSLVAIE--LM-------NE----- 296 (535)
Q Consensus 248 ---~ng-~---~~sg~~------~~~~~W~----~~~~~~~~~~~~~la~ry~~~p~V~~~e--l~-------NE----- 296 (535)
..+ + .+.+.. .+...|. |+.++..++.++.|+++|. -..|. ++ .+ ++
T Consensus 102 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIh-lDdy~yp~~~~g~~~~~~~~ 179 (311)
T PF02638_consen 102 ILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIH-LDDYFYPPPSFGYDFPDVAA 179 (311)
T ss_pred hhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEE-ecccccccccCCCCCccHHH
Confidence 000 0 111110 0111232 8899999999999999984 22332 22 11 11
Q ss_pred --------CCCCCC-------ChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 297 --------PKAPDL-------KLDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 297 --------P~~~~~-------~~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
|..... ..+.+..+.++++++|+++.|...+-++.
T Consensus 180 y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp 229 (311)
T PF02638_consen 180 YEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISP 229 (311)
T ss_pred HHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 110011 13456778999999999999998876653
No 86
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.24 E-value=0.65 Score=52.93 Aligned_cols=57 Identities=23% Similarity=0.498 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEe-CCcccc--------------ccCCCC----CCCCcc-chHHHHHHHHHHHHHcCCEEEEec
Q 046395 185 DFKFMSQNGLNAVRI-PVGWWI--------------AYDPKP----PKPFVG-GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 185 D~~~ik~~G~N~VRi-pv~~w~--------------~~~p~~----~~~~~~-~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
-++.||++|+|+|=| ||.-.. ..+|.. ...|-. +..+.|+++|+.|.++||+||||+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 589999999999987 553110 011110 001211 347889999999999999999998
No 87
>PRK03705 glycogen debranching enzyme; Provisional
Probab=93.04 E-value=0.91 Score=51.41 Aligned_cols=57 Identities=25% Similarity=0.526 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCEEEe-CCcccc--------------ccCCC----CCCCCcc---chHHHHHHHHHHHHHcCCEEEEec
Q 046395 185 DFKFMSQNGLNAVRI-PVGWWI--------------AYDPK----PPKPFVG---GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 185 D~~~ik~~G~N~VRi-pv~~w~--------------~~~p~----~~~~~~~---~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
-++.||++|+|+|=| ||.-.. ..+|. +...|-. ..++.|+++|+.|.++||+||||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 489999999999987 553110 00110 0011211 136789999999999999999998
No 88
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=91.98 E-value=8.3 Score=41.06 Aligned_cols=158 Identities=15% Similarity=0.245 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCEEEeCCc-------cccccCCCCCCC--------CccchHHHHHHHHHHHHHcCCEEEEecCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVG-------WWIAYDPKPPKP--------FVGGSLQALDNAFRWAQKYGMKVIVDLHALRVS 247 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~-------~w~~~~p~~~~~--------~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~ 247 (535)
++-++.+|++.+-.+|.|=+ |...+.|.+..| ..+..-=-..++++||++.|..+.|.+.--
T Consensus 52 kDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~G--- 128 (501)
T COG3534 52 KDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLG--- 128 (501)
T ss_pred HHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecC---
Confidence 67788899999999999864 333333332211 112233346789999999999998877631
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHH--------HHHHHHHHhCC-CC-cEEEEEeecCCCCC----CCChHHHHHHHHH
Q 046395 248 QNGSPHSGSRDGFQEWSDSDIQETVA--------IIDFLASRYAD-HP-SLVAIELMNEPKAP----DLKLDSLKTYYKA 313 (535)
Q Consensus 248 ~ng~~~sg~~~~~~~W~~~~~~~~~~--------~~~~la~ry~~-~p-~V~~~el~NEP~~~----~~~~~~~~~~~~~ 313 (535)
++ + .+....+++ +|..+-..++- .| +|-.|.|-||-.+| ....+.+..++.+
T Consensus 129 --------sr-g-----vd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e 194 (501)
T COG3534 129 --------SR-G-----VDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHKTAPEYGRLANE 194 (501)
T ss_pred --------Cc-c-----HHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccccCHHHHHHHHH
Confidence 10 0 012222332 33344333332 33 79999999999765 2345667677777
Q ss_pred HHHHHHhcCCCcEEEEcC-CCC-----CChhhh-hcccCCCCcEEEEEeecC
Q 046395 314 GYDTVRKYSSSAYVILSN-RLG-----GEWSEL-LSFASNLSRVVIDVHFYN 358 (535)
Q Consensus 314 ~~~aIR~~~p~~~ii~~~-~~g-----~~~~~~-~~~~~~~~n~v~d~H~Y~ 358 (535)
..+..+=.+|..-.+++. .-+ .+|+.. +.- ....-..+++|+|.
T Consensus 195 ~~k~~k~~d~t~e~~v~g~a~~~n~~~~~W~~~vl~~-~~e~vD~ISlH~Y~ 245 (501)
T COG3534 195 YRKYMKYFDPTIENVVCGSANGANPTDPNWEAVVLEE-AYERVDYISLHYYK 245 (501)
T ss_pred HHHHHhhcCccccceEEeecCCCCCCchHHHHHHHHH-HhhhcCeEEEEEec
Confidence 777777777764444322 111 234332 221 22335689999993
No 89
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=91.87 E-value=1.5 Score=45.65 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHcCCCEEEeCCcccccc--CCCCCCCCcc----chHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAY--DPKPPKPFVG----GSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPH 253 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~--~p~~~~~~~~----~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~ 253 (535)
+-.++-++.+|++|+.-|=+---.-..+ =|..-.+|+. ..-+.+.+++++|+++||++-+-+|... |.+
T Consensus 91 fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d-----w~~ 165 (346)
T PF01120_consen 91 FDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD-----WHH 165 (346)
T ss_dssp --HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS-----CCC
T ss_pred CCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH-----hcC
Confidence 4457888889999999987622100000 0111112321 2568899999999999999999887531 111
Q ss_pred CCCCCCC----CC---CC---hHH-HHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 046395 254 SGSRDGF----QE---WS---DSD-IQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYS 322 (535)
Q Consensus 254 sg~~~~~----~~---W~---~~~-~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~ 322 (535)
....... .. -. .++ .+.+..-+++|.++| ++.++-++...... ...+. +.+.++.||+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~-----~~~~~--~~~~~~~i~~~q 236 (346)
T PF01120_consen 166 PDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDP-----DEDWD--SAELYNWIRKLQ 236 (346)
T ss_dssp TTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCC-----CTHHH--HHHHHHHHHHHS
T ss_pred cccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCcc-----ccccC--HHHHHHHHHHhC
Confidence 1100000 00 00 122 336667888999999 67888788776642 11222 288899999999
Q ss_pred CCcEEE
Q 046395 323 SSAYVI 328 (535)
Q Consensus 323 p~~~ii 328 (535)
|+.+|.
T Consensus 237 p~~ii~ 242 (346)
T PF01120_consen 237 PDVIIN 242 (346)
T ss_dssp TTSEEE
T ss_pred CeEEEe
Confidence 977643
No 90
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=90.10 E-value=0.6 Score=50.98 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEeCCcccc-------ccCCCCCC---------CCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWI-------AYDPKPPK---------PFVG--GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~-------~~~p~~~~---------~~~~--~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-++.|+++|+++|=|+=.+.. ..++.... ..++ +..+.|+++|+.|+++||+||+|+
T Consensus 25 ~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 25 AERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35589999999999988432211 11111100 0111 467889999999999999999999
No 91
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=89.56 E-value=2.5 Score=45.03 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=79.0
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPHS 254 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~s 254 (535)
.++++.++.|++.|+|.|-|.| ..+.+.. -+.. -..+.+.++++.+++.|+. |-+|+- +.||
T Consensus 112 ~lt~e~l~~l~~~GvnrislGv--QS~~d~~L~~l~R~---~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg-------- 178 (400)
T PRK07379 112 TFDLEQLQGYRSLGVNRVSLGV--QAFQDELLALCGRS---HRVKDIFAAVDLIHQAGIENFSLDLISGLPH-------- 178 (400)
T ss_pred cCCHHHHHHHHHCCCCEEEEEc--ccCCHHHHHHhCCC---CCHHHHHHHHHHHHHcCCCeEEEEeecCCCC--------
Confidence 4689999999999999666555 3221110 0111 1567778899999999998 778875 5454
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCC
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
+..+.+.+-++.+.+ . +-+.|-.+.+.-||..+ ..+.+.....+..+.+.+++.+=
T Consensus 179 -----------qt~e~~~~tl~~~~~-l-~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy 245 (400)
T PRK07379 179 -----------QTLEDWQASLEAAIA-L-NPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY 245 (400)
T ss_pred -----------CCHHHHHHHHHHHHc-C-CCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 234555555555554 2 23467778888888752 12345666778888888888776
Q ss_pred CcE
Q 046395 324 SAY 326 (535)
Q Consensus 324 ~~~ 326 (535)
.++
T Consensus 246 ~~y 248 (400)
T PRK07379 246 EHY 248 (400)
T ss_pred cee
Confidence 655
No 92
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=89.21 E-value=3 Score=44.66 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=84.2
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~ 253 (535)
+.++.+-|+.+++.|+| ||+++-+.+-+.. -+. ....+....+++.+++.|+. |-+||- +.|+
T Consensus 133 ~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR---~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~------- 200 (416)
T COG0635 133 GTVEAEKFKALKEAGVN--RISLGVQSFNDEVLKALGR---IHDEEEAKEAVELARKAGFTSINIDLIYGLPG------- 200 (416)
T ss_pred CCCCHHHHHHHHHcCCC--EEEeccccCCHHHHHHhcC---CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-------
Confidence 45678999999999999 8888875442211 010 11456677789999999986 668884 5553
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCC
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP----------DLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
++.+.+.+-++.+.+-- -+.|-.|.|.-||... -.+.+.-...++.+.+.+.+.+=
T Consensus 201 ------------QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy 266 (416)
T COG0635 201 ------------QTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY 266 (416)
T ss_pred ------------CCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC
Confidence 45667777777766632 3478889999999863 12334566788888888888776
Q ss_pred CcE
Q 046395 324 SAY 326 (535)
Q Consensus 324 ~~~ 326 (535)
.++
T Consensus 267 ~~y 269 (416)
T COG0635 267 RQY 269 (416)
T ss_pred cEE
Confidence 444
No 93
>PLN00196 alpha-amylase; Provisional
Probab=89.08 E-value=1.2 Score=47.94 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc----cCCCCCCCCc---cchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA----YDPKPPKPFV---GGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~----~~p~~~~~~~---~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+.+..|+++|+++|=||=.+... ..+..-...+ -+..+.|+++|+.|+++||+||+|+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 577999999999999997433211 0111000011 1467889999999999999999998
No 94
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=88.58 E-value=1.3 Score=49.23 Aligned_cols=56 Identities=14% Similarity=0.332 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc----------cchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV----------GGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~----------~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-++.|+++|+++|=|.=-+.. +.....|. -+..+.|+++|+.|+++||+||+|+
T Consensus 30 ~~~l~yl~~lG~~~i~l~Pi~~~---~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 30 IEKLDYLKKLGVDYIWLNPFYVS---PQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHhHHHHHHcCCCEEEECCcccC---CCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46688999999999987322211 11111121 1468999999999999999999998
No 95
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.45 E-value=17 Score=37.03 Aligned_cols=144 Identities=8% Similarity=0.034 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCCEEEeCCcc--ccccCCCC---CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCC----CC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGW--WIAYDPKP---PKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGS----PH 253 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~--w~~~~p~~---~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~----~~ 253 (535)
++-++.|+..|+|.+=+-+.- ..-..|.- .+.| .-+.+.++++.|+++||.||..+-. ||....+ ..
T Consensus 20 k~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~y---T~~ei~ei~~yA~~~gI~vIPeid~-pGH~~~~l~~~~~ 95 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAY---TKEEIREIDDYAAELGIEVIPLIQT-LGHLEFILKHPEF 95 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCc---CHHHHHHHHHHHHHcCCEEEecCCC-HHHHHHHHhCccc
Confidence 688899999999999874321 00001110 1224 5788999999999999999987743 2211000 00
Q ss_pred CCCCC-----C-CCCCChHHHHHHHHHHHHHHHHhCCCCcE-EEE-EeecCCCCC-------CCChHHHHHHHHHHHHHH
Q 046395 254 SGSRD-----G-FQEWSDSDIQETVAIIDFLASRYADHPSL-VAI-ELMNEPKAP-------DLKLDSLKTYYKAGYDTV 318 (535)
Q Consensus 254 sg~~~-----~-~~~W~~~~~~~~~~~~~~la~ry~~~p~V-~~~-el~NEP~~~-------~~~~~~~~~~~~~~~~aI 318 (535)
...++ + .+.-.++..+-..++++++++.|.. +.+ +|- |+.+-..+. ....+.+..|..++.+.+
T Consensus 96 ~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s-~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v 174 (301)
T cd06565 96 RHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPS-KYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKII 174 (301)
T ss_pred ccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCC-CeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00000 0 0111157777788888888888863 222 221 122211110 112356789999999999
Q ss_pred HhcCCCcEEEEcCC
Q 046395 319 RKYSSSAYVILSNR 332 (535)
Q Consensus 319 R~~~p~~~ii~~~~ 332 (535)
++.++ .++++++.
T Consensus 175 ~~~g~-~~~~W~D~ 187 (301)
T cd06565 175 KKRGP-KPMMWDDM 187 (301)
T ss_pred HHcCC-EEEEEhHH
Confidence 99987 55566553
No 96
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=88.34 E-value=3.9 Score=42.99 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=77.5
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~ 253 (535)
..++++.++.|+++|+|.|-|+| ..+.+.. -+.. ...+.+.++++.+++.|+. |-+|+- +.||
T Consensus 95 ~~~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~---~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg------- 162 (374)
T PRK05799 95 GTFTEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRI---HTFEEFLENYKLARKLGFNNINVDLMFGLPN------- 162 (374)
T ss_pred CcCCHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCC---CCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-------
Confidence 45789999999999999655555 3322110 0111 1567788899999999997 667765 4443
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcC
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DLKLDSLKTYYKAGYDTVRKYS 322 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~ 322 (535)
++.+.+.+.++.+.+. + -+.|-.|.+.-+|..+ ..+.+.....+..+.+.+.+.+
T Consensus 163 ------------qt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G 228 (374)
T PRK05799 163 ------------QTLEDWKETLEKVVEL-N-PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKG 228 (374)
T ss_pred ------------CCHHHHHHHHHHHHhc-C-CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcC
Confidence 3456666667766653 2 2356567777788642 1123455667777778887776
Q ss_pred CCcE
Q 046395 323 SSAY 326 (535)
Q Consensus 323 p~~~ 326 (535)
=.++
T Consensus 229 y~~y 232 (374)
T PRK05799 229 YHQY 232 (374)
T ss_pred CcEE
Confidence 5554
No 97
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=88.32 E-value=24 Score=35.97 Aligned_cols=144 Identities=12% Similarity=0.158 Sum_probs=83.2
Q ss_pred hHHHHHHHHHcCCCEEEeCCc----cccccC--CC------------CCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVG----WWIAYD--PK------------PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~----~w~~~~--p~------------~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
.++-++.|+..++|.+-+-+. |-.-.. |. +++.| ..+.+.++++.|+++||.||..+-.
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~y---T~~di~elv~yA~~rgI~viPEiD~ 94 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFY---TYAQLKDIIEYAAARGIEVIPEIDM 94 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeE---CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 367888999999999988664 211001 11 11223 5688999999999999999977632
Q ss_pred C----------CCCC-CCCCCCCCC--CCC-CCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHH
Q 046395 244 L----------RVSQ-NGSPHSGSR--DGF-QEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKT 309 (535)
Q Consensus 244 ~----------pg~~-ng~~~sg~~--~~~-~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~ 309 (535)
. |.-. ......... .+. +.=.++..+-..++++++++.|...---+|= -|........+.+..
T Consensus 95 PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGg---DE~~~~~~~~~l~~~ 171 (303)
T cd02742 95 PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGG---DEAHFKQDRKHLMSQ 171 (303)
T ss_pred hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecc---eecCCCCCHHHHHHH
Confidence 1 1100 000000000 000 1111567778888999999888542111221 122111123456788
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCC
Q 046395 310 YYKAGYDTVRKYSSSAYVILSNR 332 (535)
Q Consensus 310 ~~~~~~~aIR~~~p~~~ii~~~~ 332 (535)
|.+++.+.+++.+ ..++++++.
T Consensus 172 f~~~~~~~v~~~g-~~~~~W~d~ 193 (303)
T cd02742 172 FIQRVLDIVKKKG-KKVIVWQDG 193 (303)
T ss_pred HHHHHHHHHHHcC-CeEEEeccc
Confidence 8899999999987 455566543
No 98
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=88.23 E-value=3.8 Score=41.87 Aligned_cols=127 Identities=19% Similarity=0.236 Sum_probs=75.7
Q ss_pred CccchHHHHHHHHH---cCCCEEEeCCccccccCCCCCCCCcc-chHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCC
Q 046395 178 KSYITEEDFKFMSQ---NGLNAVRIPVGWWIAYDPKPPKPFVG-GSLQALDNAFRWAQKYGMKVIVDLH-ALRVSQNGSP 252 (535)
Q Consensus 178 ~~~ite~D~~~ik~---~G~N~VRipv~~w~~~~p~~~~~~~~-~~l~~ld~~i~~a~~~Gi~VIldlH-~~pg~~ng~~ 252 (535)
...++++.++.|++ .|++ +||-++.+...+..- ..... ...+.+.++++.++++||.|.+++- +.||
T Consensus 118 pd~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~L-~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg------ 189 (302)
T TIGR01212 118 PDCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKTL-KKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG------ 189 (302)
T ss_pred CCcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHHH-HHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC------
Confidence 34566777777664 5885 344444332211100 00011 1467778899999999999887654 4343
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC--------CCChHHHHHHHHHHHHHHHhcCCC
Q 046395 253 HSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP--------DLKLDSLKTYYKAGYDTVRKYSSS 324 (535)
Q Consensus 253 ~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~--------~~~~~~~~~~~~~~~~aIR~~~p~ 324 (535)
+..+.+.+.++.+.+.--+ .|..+.+.-+|..+ ......+..|+..+...++.+.++
T Consensus 190 -------------et~e~~~~t~~~l~~l~~d--~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~ 254 (302)
T TIGR01212 190 -------------EDREEMMETAKIVSLLDVD--GIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPE 254 (302)
T ss_pred -------------CCHHHHHHHHHHHHhcCCC--EEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcC
Confidence 3446666666666552223 56667788888752 112234577888888999988887
Q ss_pred cEE
Q 046395 325 AYV 327 (535)
Q Consensus 325 ~~i 327 (535)
..|
T Consensus 255 ~~i 257 (302)
T TIGR01212 255 VVI 257 (302)
T ss_pred eEE
Confidence 654
No 99
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=88.20 E-value=4.4 Score=42.43 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=79.0
Q ss_pred CccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCC
Q 046395 178 KSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSP 252 (535)
Q Consensus 178 ~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~ 252 (535)
+..++++.++.|++.|+|.|=|+|- .+.+.. -+.. ...+.+.++++.|+++|+. |-+|+- +.||
T Consensus 98 P~~lt~e~l~~lk~~G~nrisiGvQ--S~~d~vL~~l~R~---~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg------ 166 (353)
T PRK05904 98 PELITQSQINLLKKNKVNRISLGVQ--SMNNNILKQLNRT---HTIQDSKEAINLLHKNGIYNISCDFLYCLPI------ 166 (353)
T ss_pred cCcCCHHHHHHHHHcCCCEEEEecc--cCCHHHHHHcCCC---CCHHHHHHHHHHHHHcCCCcEEEEEeecCCC------
Confidence 3467899999999999997766553 221110 0111 2567788899999999997 778874 5453
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC------CCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 253 HSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP------DLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 253 ~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
+..+.+.+.++.+.+ .+- +.|..+.+.=||..+ ..+.+.-.+.++.+.+.+++.+-.++
T Consensus 167 -------------qt~e~~~~tl~~~~~-l~p-~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 231 (353)
T PRK05904 167 -------------LKLKDLDEVFNFILK-HKI-NHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRY 231 (353)
T ss_pred -------------CCHHHHHHHHHHHHh-cCC-CEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEE
Confidence 344556666665554 221 255556666677632 12344556677888888888877665
No 100
>PLN02361 alpha-amylase
Probab=88.10 E-value=1.4 Score=46.97 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=44.4
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCC---C--c--cchHHHHHHHHHHHHHcCCEEEEec
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKP---F--V--GGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~---~--~--~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+|..- ++.++.|+++|+++|=||=..... .+....+ | + -+..+.|+.+|+.|+++||+||+|+
T Consensus 26 ~~w~~i--~~kl~~l~~lG~t~iwl~P~~~~~-~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNL--EGKVPDLAKSGFTSAWLPPPSQSL-APEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHH--HHHHHHHHHcCCCEEEeCCCCcCC-CCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 356433 677899999999999986543211 1100001 1 1 1467899999999999999999999
No 101
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=87.94 E-value=4.7 Score=42.44 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=79.8
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~ 253 (535)
..++++.++.|+++|+|.|-|.|- .+-+.. -+.. -..+.+.++++.|++.|+. |-+||- +.||
T Consensus 99 ~~~~~~~l~~l~~~G~nrislGvQ--S~~~~~L~~l~R~---~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg------- 166 (370)
T PRK06294 99 ENLSESYIRALALTGINRISIGVQ--TFDDPLLKLLGRT---HSSSKAIDAVQECSEHGFSNLSIDLIYGLPT------- 166 (370)
T ss_pred CCCCHHHHHHHHHCCCCEEEEccc--cCCHHHHHHcCCC---CCHHHHHHHHHHHHHcCCCeEEEEeecCCCC-------
Confidence 456799999999999997766553 221110 0111 1456777899999999996 778875 4443
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcC
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DLKLDSLKTYYKAGYDTVRKYS 322 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~ 322 (535)
+..+.+.+.++.+.+ ++ -+.|-.|.+.=||..+ ....+.....++.+.+.+.+.+
T Consensus 167 ------------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~G 232 (370)
T PRK06294 167 ------------QSLSDFIVDLHQAIT-LP-ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQG 232 (370)
T ss_pred ------------CCHHHHHHHHHHHHc-cC-CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 345566666666665 22 2367778888888742 1133556678888888888877
Q ss_pred CCcE
Q 046395 323 SSAY 326 (535)
Q Consensus 323 p~~~ 326 (535)
=.++
T Consensus 233 y~~y 236 (370)
T PRK06294 233 FTRY 236 (370)
T ss_pred CCee
Confidence 6555
No 102
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=87.92 E-value=4.2 Score=42.62 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=75.1
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPHSG 255 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~sg 255 (535)
..++++.++.|+++|+|.|-|.|- .+ ++.--.... ....+.+.++++.+++.|+. |-+|+- +.|+
T Consensus 96 ~~lt~e~l~~l~~~Gv~risiGvq--S~-~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg--------- 163 (360)
T TIGR00539 96 ELITAEWCKGLKGAGINRLSLGVQ--SF-RDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL--------- 163 (360)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecc--cC-ChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC---------
Confidence 457899999999999997766653 22 111000010 12577888899999999996 668875 3343
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCc
Q 046395 256 SRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-------DLKLDSLKTYYKAGYDTVRKYSSSA 325 (535)
Q Consensus 256 ~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~ 325 (535)
++.+.+.+.++.+.+ .+ -+.|..+.+.=||..+ ....+.....+..+.+.+++.+=.+
T Consensus 164 ----------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 228 (360)
T TIGR00539 164 ----------QTLNSLKEELKLAKE-LP-INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQ 228 (360)
T ss_pred ----------CCHHHHHHHHHHHHc-cC-CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCce
Confidence 345566666666655 22 1255556666677642 1123455666777777777755433
No 103
>PRK09505 malS alpha-amylase; Reviewed
Probab=87.58 E-value=1.6 Score=49.66 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc-------------------cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA-------------------YDPKPPKPFVG--GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~-------------------~~p~~~~~~~~--~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-++.|+++|+|+|=|+=.+... ..+......++ +..+.|+++|+.|+++||+||+|+
T Consensus 233 ~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 233 TEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred HHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 355899999999999873211110 00000000111 468899999999999999999998
No 104
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=87.39 E-value=3.5 Score=44.32 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEE-EecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMKVI-VDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~VI-ldlH-~~pg~~ng~~~ 253 (535)
..++++.++.|+++|+|.|-|+|-- +.+.. -+.. ...+.+.++++.++++|+.+| +|+- +.|+
T Consensus 137 ~~lt~e~l~~l~~~G~~rvslGvQS--~~~~~L~~l~R~---~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~------- 204 (430)
T PRK08208 137 ATTTAEKLALLAARGVNRLSIGVQS--FHDSELHALHRP---QKRADVHQALEWIRAAGFPILNIDLIYGIPG------- 204 (430)
T ss_pred CcCCHHHHHHHHHcCCCEEEEeccc--CCHHHHHHhCCC---CCHHHHHHHHHHHHHcCCCeEEEEeecCCCC-------
Confidence 4578999999999999977776632 21110 0111 156788899999999999864 7764 4443
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----CCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----DLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
+..+.+.+.++.+.+ .+ -+.|-.+.+.=||..+ ....+.....++.+.+.+.+.+=.++
T Consensus 205 ------------qt~e~~~~~l~~~~~-l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~y 268 (430)
T PRK08208 205 ------------QTHASWMESLDQALV-YR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQT 268 (430)
T ss_pred ------------CCHHHHHHHHHHHHh-CC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 344555555555554 22 2356667777777642 11235566777777777777664443
No 105
>PRK05660 HemN family oxidoreductase; Provisional
Probab=87.26 E-value=5 Score=42.38 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=77.4
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEE-EEecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMKV-IVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~V-IldlH-~~pg~~ng~~~ 253 (535)
..++++.++.|+++|+|.|-|.|- .+.+.. -+. ....+...++++.|++.|+.. -+|+- +.||
T Consensus 103 ~~l~~e~l~~Lk~~Gv~risiGvq--S~~~~~L~~l~r---~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg------- 170 (378)
T PRK05660 103 GTVEADRFVGYQRAGVNRISIGVQ--SFSEEKLKRLGR---IHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD------- 170 (378)
T ss_pred CcCCHHHHHHHHHcCCCEEEeccC--cCCHHHHHHhCC---CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC-------
Confidence 457789999999999996666552 221100 011 125677888999999999975 48775 4343
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-------DLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
++.+.+.+.++.+.+--- +.|-.|.+.=||..+ -...+.....++.+.+.+.+.+=.++
T Consensus 171 ------------qt~~~~~~~l~~~~~l~p--~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 236 (378)
T PRK05660 171 ------------QSLEEALDDLRQAIALNP--PHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQY 236 (378)
T ss_pred ------------CCHHHHHHHHHHHHhcCC--CeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEe
Confidence 355666666666665222 366667777777632 01234556677788888888765554
No 106
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=87.18 E-value=1.8 Score=48.14 Aligned_cols=55 Identities=20% Similarity=0.469 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEe-CCccccccCCCCCCCCc----------cchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGWWIAYDPKPPKPFV----------GGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~w~~~~p~~~~~~~----------~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+.++.|+++|+++|=| |+. .. |.....|+ -+..+.|+++|+.|+++||+||+|+
T Consensus 36 ~~~ldyl~~lGv~~i~l~P~~-~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 36 TQRLDYLQKLGVDAIWLTPFY-VS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHhhHHHHhCCCCEEEECCCC-CC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36689999999999987 432 11 11000121 1467899999999999999999999
No 107
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=87.08 E-value=7.8 Score=35.18 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=67.0
Q ss_pred EEEEeecCcEEEEec--CCCce-EEeccCCCCCCCCceeEEEE--ecCCeEEEEee-CCcEEEeecCCC--eEEEeccCC
Q 046395 21 QLISTKLKKYLTAEN--GSETI-LMANHNSSSTSSWQTFRLWR--INETFYNFRLS-NKQFIGLENQGN--KLVAVSATE 92 (535)
Q Consensus 21 ~~~~~~~~~~~~a~~--~g~~~-~~anr~~~~~~~we~f~~~~--~~~~~~~~~~~-~~~~v~~~~~~~--~~~a~~~~~ 92 (535)
-++|=-|||||++-. +..-. |--+-+.+ ..++-.|++.. ..++.+.+|.. +++|..... ++ -+.|.++.|
T Consensus 8 V~fkg~N~kYLry~~e~~~~~~~LqF~~edi-~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s-~n~~WI~ada~~p 85 (153)
T PF07468_consen 8 VAFKGDNGKYLRYRTEDIQQYGYLQFSGEDI-GDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSS-PNDYWIWADADDP 85 (153)
T ss_dssp EEEETTTS-EEEEEESSCTTCCEEEEEESST-T-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESC-CC--BEEEEESSH
T ss_pred EEEEcCCCcEEEEEecccccceeEEecCCcC-CCCceeEEEEEcccCCCeEEEEeccCCceeEeCC-CCCcEEEecCCCc
Confidence 456688999999876 33222 44444444 26999999999 88999999964 999998754 44 588887776
Q ss_pred C-----CCCc-eEEEecC-CCCceeEEEecC-CceEEE
Q 046395 93 K-----FPEP-FQITRKN-GEPHRVRFRASN-GYFLQA 122 (535)
Q Consensus 93 ~-----~~e~-f~~~~~~-~~~~~v~I~~~n-G~flq~ 122 (535)
. +..| |+-|+-+ ++...|+++... |.|.+-
T Consensus 86 ~ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r 123 (153)
T PF07468_consen 86 DEDQSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKR 123 (153)
T ss_dssp HH-TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEE
T ss_pred ccccCCCCceEEEEEEecCCCccEEEEEecCCceEEEE
Confidence 4 3677 9977643 445578888755 777754
No 108
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=86.64 E-value=1.4 Score=53.52 Aligned_cols=59 Identities=24% Similarity=0.446 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEe-CCccccc--------------cCCC----CCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGWWIA--------------YDPK----PPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~w~~--------------~~p~----~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
++.++.||++|+|+|=| ||.-..- .++. +...|-.+..+.++++|+.|+++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 46688999999999987 5532110 0110 0001211267899999999999999999998
No 109
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.63 E-value=17 Score=37.45 Aligned_cols=142 Identities=12% Similarity=0.155 Sum_probs=83.5
Q ss_pred hHHHHHHHHHcCCCEEEeCCcc-ccc-cC--CC-----------------------CCCCCccchHHHHHHHHHHHHHcC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGW-WIA-YD--PK-----------------------PPKPFVGGSLQALDNAFRWAQKYG 234 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~-w~~-~~--p~-----------------------~~~~~~~~~l~~ld~~i~~a~~~G 234 (535)
.++-++.|+..++|.+-+-+.= |.+ .+ |. .++.| ..+.++++++.|+++|
T Consensus 19 ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y---T~~di~eiv~yA~~rg 95 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYY---TKEEFKELIAYAKDRG 95 (326)
T ss_pred HHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcc---cHHHHHHHHHHHHHcC
Confidence 4788888999999999874421 111 00 10 11123 5788999999999999
Q ss_pred CEEEEecCCCCCCCCCC-----------CCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHhCC-CCcE-EE-EEeecCCCC
Q 046395 235 MKVIVDLHALRVSQNGS-----------PHSGSRDGFQEWS-DSDIQETVAIIDFLASRYAD-HPSL-VA-IELMNEPKA 299 (535)
Q Consensus 235 i~VIldlH~~pg~~ng~-----------~~sg~~~~~~~W~-~~~~~~~~~~~~~la~ry~~-~p~V-~~-~el~NEP~~ 299 (535)
|.||..+-. ||....+ .......+..... ++..+-..++++++++.|.. .+.| +| =|+.+.
T Consensus 96 I~vIPEID~-PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGgDE~~~~--- 171 (326)
T cd06564 96 VNIIPEIDS-PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGADEYAGD--- 171 (326)
T ss_pred CeEeccCCC-cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEecccccccc---
Confidence 999976632 2111000 0000000111111 66777788888999988873 2322 11 122222
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 046395 300 PDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNR 332 (535)
Q Consensus 300 ~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~ 332 (535)
....+.+..|..++.+.|++.+. .++++.+.
T Consensus 172 -~~~~~~~~~f~~~~~~~v~~~gk-~~~~W~d~ 202 (326)
T cd06564 172 -AGYAEAFRAYVNDLAKYVKDKGK-TPRVWGDG 202 (326)
T ss_pred -CccHHHHHHHHHHHHHHHHHcCC-eEEEeCCc
Confidence 23456788999999999999854 45566543
No 110
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=86.62 E-value=1.8 Score=47.96 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCC--------cc--chHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPF--------VG--GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~--------~~--~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-++.|+++|+|+|=|.=-+.. +.....| ++ +..+.++++|+.|+++||+||+|+
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999987321111 1000112 11 467899999999999999999998
No 111
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=86.40 E-value=5.4 Score=42.14 Aligned_cols=122 Identities=18% Similarity=0.085 Sum_probs=77.9
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH-ALRVSQNGSPHS 254 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH-~~pg~~ng~~~s 254 (535)
..++++.++.|+++|+|.|-|.| ..+.+.. -+... ..+.+.++++++++.++.|-+|+- +.||
T Consensus 100 ~~i~~e~L~~l~~~GvnrislGv--QS~~d~vL~~l~R~~---~~~~~~~ai~~~~~~~~~v~~dli~GlPg-------- 166 (380)
T PRK09057 100 TSVEAGRFRGYRAAGVNRVSLGV--QALNDADLRFLGRLH---SVAEALAAIDLAREIFPRVSFDLIYARPG-------- 166 (380)
T ss_pred CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCCC---CHHHHHHHHHHHHHhCccEEEEeecCCCC--------
Confidence 45778999999999999666655 2222110 01111 456677788999988999999985 4443
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCC
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
+..+.+.+-++.+.+ + +-+.|..+.+.=||..+ ..+.+.....++.+.+.+++.+-
T Consensus 167 -----------qt~~~~~~~l~~~~~-l-~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~ 233 (380)
T PRK09057 167 -----------QTLAAWRAELKEALS-L-AADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGL 233 (380)
T ss_pred -----------CCHHHHHHHHHHHHh-c-CCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC
Confidence 234445555555554 3 33467778888888742 12334556778888888887765
Q ss_pred CcE
Q 046395 324 SAY 326 (535)
Q Consensus 324 ~~~ 326 (535)
.++
T Consensus 234 ~~y 236 (380)
T PRK09057 234 PAY 236 (380)
T ss_pred chh
Confidence 433
No 112
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=85.95 E-value=4.5 Score=43.82 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=75.2
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPHSG 255 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~sg 255 (535)
..++++.++.|+++|+|.|-|.|- .+ ++.--.... ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 148 ~~lt~e~l~~L~~~G~~rvsiGvQ--S~-~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg--------- 215 (453)
T PRK13347 148 RTVTAEMLQALAALGFNRASFGVQ--DF-DPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH--------- 215 (453)
T ss_pred ccCCHHHHHHHHHcCCCEEEECCC--CC-CHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC---------
Confidence 457899999999999997666552 22 111000000 12577888999999999996 777764 4443
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCCCc
Q 046395 256 SRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP----------DLKLDSLKTYYKAGYDTVRKYSSSA 325 (535)
Q Consensus 256 ~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 325 (535)
++.+.+.+.++.+.+.=-+ .|..+.+...|... -.+.+.....++.+.+.+.+.+=.+
T Consensus 216 ----------qt~e~~~~tl~~~~~l~p~--~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 216 ----------QTVESFRETLDKVIALSPD--RIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred ----------CCHHHHHHHHHHHHhcCCC--EEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE
Confidence 3556666666666652222 45445555555421 1123455667777778887766443
No 113
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=85.42 E-value=5.8 Score=41.77 Aligned_cols=122 Identities=21% Similarity=0.222 Sum_probs=76.6
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCC---CCCCCCccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDP---KPPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p---~~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~ 253 (535)
..++++.++.|+++|+|.|-|+|-- +-+. .-+.. ...+.+.++++.+++.|+. |-+|+- +.||
T Consensus 96 ~~l~~e~l~~l~~~G~~rvsiGvqS--~~~~~l~~l~r~---~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg------- 163 (377)
T PRK08599 96 GDLTKEKLQVLKDSGVNRISLGVQT--FNDELLKKIGRT---HNEEDVYEAIANAKKAGFDNISIDLIYALPG------- 163 (377)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeccc--CCHHHHHHcCCC---CCHHHHHHHHHHHHHcCCCcEEEeeecCCCC-------
Confidence 4578999999999999977776632 2110 00111 2567888999999999997 567764 4443
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcC
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DLKLDSLKTYYKAGYDTVRKYS 322 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~ 322 (535)
++.+.+.+.++.+.+ .+ -+.|..+.+.-+|..+ ..+.+...+.++.+.+.+++.+
T Consensus 164 ------------qt~~~~~~~l~~~~~-l~-~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G 229 (377)
T PRK08599 164 ------------QTIEDFKESLAKALA-LD-IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHG 229 (377)
T ss_pred ------------CCHHHHHHHHHHHHc-cC-CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 344555555555544 32 2356667777788642 0123455667777888888776
Q ss_pred CCcE
Q 046395 323 SSAY 326 (535)
Q Consensus 323 p~~~ 326 (535)
=.++
T Consensus 230 y~~~ 233 (377)
T PRK08599 230 FHQY 233 (377)
T ss_pred CcEe
Confidence 5443
No 114
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=85.20 E-value=4.3 Score=45.64 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=41.7
Q ss_pred chHHHHHHHHHcCCCEEEe-CCccc-c-----------ccCCCCCCCCc----cchHHHHHHHHHHHHHcCCEEEEec
Q 046395 181 ITEEDFKFMSQNGLNAVRI-PVGWW-I-----------AYDPKPPKPFV----GGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRi-pv~~w-~-----------~~~p~~~~~~~----~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
++++++..||.+|+|+|-| |+.-. . ++-|. ..|- ......++.+|+.|.+.||.|+||+
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps--srYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS--SRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc--ccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 4688899999999999997 44211 0 01111 0111 1237789999999999999999998
No 115
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=85.02 E-value=11 Score=32.73 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=57.9
Q ss_pred eeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEEe-eCCcEEEeecCCCeEEEeccCCCCCCc
Q 046395 19 QVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFRL-SNKQFIGLENQGNKLVAVSATEKFPEP 97 (535)
Q Consensus 19 ~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~a~~~~~~~~e~ 97 (535)
.+||=+-. |+||+....| .|.+.++.- +....|.+..++.+.+.+|. ..+.|+|++. .|.|.+.. .+...-.
T Consensus 2 ~~~Ly~~~-~~~L~i~~~g--~V~gt~~~~--~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~-~G~ly~~~-~~~~~C~ 74 (122)
T PF00167_consen 2 HVQLYCRT-GYFLQINPNG--TVDGTGDDN--SPYSVFEIHSVGFGVVRIRGVKSCRYLCMNK-CGRLYGSK-NFNKDCV 74 (122)
T ss_dssp EEEEEETT-SEEEEEETTS--BEEEESSTT--STTGEEEEEEEETTEEEEEETTTTEEEEEBT-TSBEEEES-SBTGGGE
T ss_pred CEEEEECC-CeEEEECCCC--eEeCCCCcC--cceeEEEEEeccceEEEEEEecceEEEEECC-CCeEcccc-ccCCCce
Confidence 46777555 9999987654 777778877 88899999999999999994 4899999997 78888854 4544555
Q ss_pred eE
Q 046395 98 FQ 99 (535)
Q Consensus 98 f~ 99 (535)
|.
T Consensus 75 F~ 76 (122)
T PF00167_consen 75 FR 76 (122)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 116
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=84.33 E-value=12 Score=40.64 Aligned_cols=122 Identities=12% Similarity=0.024 Sum_probs=79.9
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcC-CEEEEecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYG-MKVIVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~G-i~VIldlH-~~pg~~ng~~~ 253 (535)
..++++.++.|++.|+|.|-|.|- .+.+.. -+. ....+.+.++++.++++| +.|.+||- +.||
T Consensus 159 ~~~t~e~l~~l~~aGvnRiSiGVQ--Sf~d~vLk~lgR---~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPg------- 226 (449)
T PRK09058 159 NGFDDEKADAALDAGANRFSIGVQ--SFNTQVRRRAGR---KDDREEVLARLEELVARDRAAVVCDLIFGLPG------- 226 (449)
T ss_pred CcCCHHHHHHHHHcCCCEEEecCC--cCCHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCC-------
Confidence 346799999999999997777663 221100 011 114567778899999999 78999985 5453
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CC-ChHHHHHHHHHHHHHHHhc
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DL-KLDSLKTYYKAGYDTVRKY 321 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~-~~~~~~~~~~~~~~aIR~~ 321 (535)
+..+.+.+-++.+.+ ++ -..|..|.|.-||..+ .. +.+.....|+.+.+.+++.
T Consensus 227 ------------qT~e~~~~~l~~~~~-l~-~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~ 292 (449)
T PRK09058 227 ------------QTPEIWQQDLAIVRD-LG-LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKA 292 (449)
T ss_pred ------------CCHHHHHHHHHHHHh-cC-CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334555555555554 22 2367778888898752 11 3466678888888888887
Q ss_pred CCCcE
Q 046395 322 SSSAY 326 (535)
Q Consensus 322 ~p~~~ 326 (535)
+=.++
T Consensus 293 Gy~~y 297 (449)
T PRK09058 293 GWRQL 297 (449)
T ss_pred CCeEE
Confidence 76554
No 117
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=84.17 E-value=6.3 Score=33.15 Aligned_cols=69 Identities=12% Similarity=0.270 Sum_probs=50.3
Q ss_pred eeEEEEec--CCeEEEEe-eCCcEEEeecC---CCe-EEEeccCCCCCCceEEEecCCCCceeEEEecC-CceEEEecc
Q 046395 55 TFRLWRIN--ETFYNFRL-SNKQFIGLENQ---GNK-LVAVSATEKFPEPFQITRKNGEPHRVRFRASN-GYFLQAKSE 125 (535)
Q Consensus 55 ~f~~~~~~--~~~~~~~~-~~~~~v~~~~~---~~~-~~a~~~~~~~~e~f~~~~~~~~~~~v~I~~~n-G~flq~~~~ 125 (535)
.+++-.++ ++.|.|+. ..|+++.+.+. +++ |+.....-...+.|.|++..+++ .+|...+ |+.|.+.+.
T Consensus 4 ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~--y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 4 QWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGY--YRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSE--EEEEETSTTEEEEEGGG
T ss_pred EEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCe--EEEEECCCCcEEEECCC
Confidence 45666666 89999995 59999999863 233 65555555889999999987653 6677766 888887654
No 118
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=83.79 E-value=12 Score=39.45 Aligned_cols=122 Identities=17% Similarity=0.074 Sum_probs=78.6
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~ 253 (535)
..++++.++.|+++|+|.|-++|-- +.+.. -+.. ...+.+.++++.+++.|+. |.+|+- +.||
T Consensus 104 ~~i~~e~l~~l~~~G~~rvslGvQS--~~~~~L~~l~R~---~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg------- 171 (375)
T PRK05628 104 ESTSPEFFAALRAAGFTRVSLGMQS--AAPHVLAVLDRT---HTPGRAVAAAREARAAGFEHVNLDLIYGTPG------- 171 (375)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeccc--CCHHHHHHcCCC---CCHHHHHHHHHHHHHcCCCcEEEEEeccCCC-------
Confidence 4578999999999999977776632 21110 0111 1567788899999999998 888875 4443
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcC
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DLKLDSLKTYYKAGYDTVRKYS 322 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~ 322 (535)
+..+.+.+.++.+.+ ++- ..|..|.+.=||..+ ..+.+.....+..+.+.+++.+
T Consensus 172 ------------qt~~~~~~tl~~~~~-l~~-~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G 237 (375)
T PRK05628 172 ------------ESDDDWRASLDAALE-AGV-DHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAG 237 (375)
T ss_pred ------------CCHHHHHHHHHHHHh-cCC-CEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcC
Confidence 345666666666554 321 245556777677642 1223456677777778888776
Q ss_pred CCcE
Q 046395 323 SSAY 326 (535)
Q Consensus 323 p~~~ 326 (535)
=.++
T Consensus 238 ~~~y 241 (375)
T PRK05628 238 FDWY 241 (375)
T ss_pred CCee
Confidence 5544
No 119
>PLN03244 alpha-amylase; Provisional
Probab=83.66 E-value=16 Score=41.98 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEEec---CCCCCCCCC----------CCCCCCCCCCCCCC--------hHHHHHHHHHHHH
Q 046395 219 SLQALDNAFRWAQKYGMKVIVDL---HALRVSQNG----------SPHSGSRDGFQEWS--------DSDIQETVAIIDF 277 (535)
Q Consensus 219 ~l~~ld~~i~~a~~~Gi~VIldl---H~~pg~~ng----------~~~sg~~~~~~~W~--------~~~~~~~~~~~~~ 277 (535)
..+.|+++|+.|.++||.||||+ |..+....| +.+.+.......|. ++.++..+..++.
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 57889999999999999999998 333321101 11111111123343 5667777777777
Q ss_pred HHHHhCCCC-------cEEEEE--e--ecCCC----CCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 278 LASRYADHP-------SLVAIE--L--MNEPK----APDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 278 la~ry~~~p-------~V~~~e--l--~NEP~----~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
..+.|+=+. +++..+ + ++.+. ....+ ..-..|++.+-..|++..|+.++|-.
T Consensus 519 WleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d-~dAv~fL~laN~~ih~~~P~~itIAE 585 (872)
T PLN03244 519 WITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVD-KDALMYLILANEILHALHPKIITIAE 585 (872)
T ss_pred HHHHhCcCcceeecchhheeeccccccccCCccccccccCC-chHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 777664321 222111 1 01111 00112 24567888999999999998776664
No 120
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=83.59 E-value=9.5 Score=40.51 Aligned_cols=122 Identities=16% Similarity=0.084 Sum_probs=79.4
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH-ALRVSQNGSPHS 254 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH-~~pg~~ng~~~s 254 (535)
..++++.++.|+++|+|.|-|.| ..+-+.. -+. ....+...++++.|++.+..|-+||- +.||
T Consensus 107 ~~~~~e~l~~l~~~GvnRiSiGv--QS~~d~~L~~lgR---~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg-------- 173 (390)
T PRK06582 107 TSFETEKFKAFKLAGINRVSIGV--QSLKEDDLKKLGR---THDCMQAIKTIEAANTIFPRVSFDLIYARSG-------- 173 (390)
T ss_pred CcCCHHHHHHHHHCCCCEEEEEC--CcCCHHHHHHcCC---CCCHHHHHHHHHHHHHhCCcEEEEeecCCCC--------
Confidence 45789999999999999655544 3322110 011 11456666778888888888999986 4443
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----------CCChHHHHHHHHHHHHHHHhcCC
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-----------DLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-----------~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
+..+.+.+-++.+++ + +-+.|-.|.|.=||..+ ..+.+.....++.+.+.+++.+=
T Consensus 174 -----------qt~e~~~~~l~~~~~-l-~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 240 (390)
T PRK06582 174 -----------QTLKDWQEELKQAMQ-L-ATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKY 240 (390)
T ss_pred -----------CCHHHHHHHHHHHHh-c-CCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC
Confidence 344556666666655 2 23478788888888642 12345667788888888888776
Q ss_pred CcE
Q 046395 324 SAY 326 (535)
Q Consensus 324 ~~~ 326 (535)
.++
T Consensus 241 ~~y 243 (390)
T PRK06582 241 FRY 243 (390)
T ss_pred cee
Confidence 555
No 121
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=83.35 E-value=10 Score=39.61 Aligned_cols=124 Identities=18% Similarity=0.117 Sum_probs=74.9
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPHSG 255 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~sg 255 (535)
..++++.++.|+++|+|.|-|.|- .+.+..- .... ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 94 ~~~~~e~l~~l~~~GvnRiSiGvQ--S~~~~~L-~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg--------- 161 (350)
T PRK08446 94 NSATKAWLKGMKNLGVNRISFGVQ--SFNEDKL-KFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL--------- 161 (350)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecc--cCCHHHH-HHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC---------
Confidence 457799999999999996666553 2221100 0000 12567888899999999996 558885 4443
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC----hHHHHHHHHHHHHHHHhcCCCcE
Q 046395 256 SRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLK----LDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 256 ~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~----~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
++.+.+.+.++.+.+ .+ -+.|..+.+.=||..+-.. ...-...+..+.+.+++.+=.++
T Consensus 162 ----------qt~~~~~~~l~~~~~-l~-~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~y 224 (350)
T PRK08446 162 ----------DNKKLLKEELKLAKE-LP-INHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQY 224 (350)
T ss_pred ----------CCHHHHHHHHHHHHh-cC-CCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEE
Confidence 345566666666554 22 2356667777788643100 00112466667777777765544
No 122
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=82.62 E-value=9.4 Score=41.79 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=75.2
Q ss_pred CccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCC-EEEEecC-CCCCCCCCCC
Q 046395 178 KSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGM-KVIVDLH-ALRVSQNGSP 252 (535)
Q Consensus 178 ~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi-~VIldlH-~~pg~~ng~~ 252 (535)
+..++++.++.|+++|+|.|-| +...+.+.. -+. ....+.+.++++.|+++|+ .|-+|+- +.||
T Consensus 264 Pd~it~e~L~~Lk~~Gv~RISI--GvQS~~d~vLk~igR---~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg------ 332 (488)
T PRK08207 264 PDTITEEKLEVLKKYGVDRISI--NPQTMNDETLKAIGR---HHTVEDIIEKFHLAREMGFDNINMDLIIGLPG------ 332 (488)
T ss_pred CCCCCHHHHHHHHhcCCCeEEE--cCCcCCHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC------
Confidence 3467899999999999995444 433221100 011 1257888899999999999 6778875 4443
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC---------CCChHHHHHHHHHHHHHHHhcCC
Q 046395 253 HSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP---------DLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 253 ~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~---------~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
+..+.+.+.++.+.+---+ .|-.+.|.=+|..+ ..+.+.....++.+.+..++.+-
T Consensus 333 -------------Et~ed~~~tl~~l~~L~pd--~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy 397 (488)
T PRK08207 333 -------------EGLEEVKHTLEEIEKLNPE--SLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGY 397 (488)
T ss_pred -------------CCHHHHHHHHHHHHhcCcC--EEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence 3456666666665542222 44445554444421 12345566777888888887765
Q ss_pred CcE
Q 046395 324 SAY 326 (535)
Q Consensus 324 ~~~ 326 (535)
.++
T Consensus 398 ~~Y 400 (488)
T PRK08207 398 VPY 400 (488)
T ss_pred Hhh
Confidence 554
No 123
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=82.31 E-value=3 Score=42.66 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.+-++.|.+.||.-|=..+. .| .+..+..+..++++++.|.++||+||+|.-
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl~-----~~---~~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSLL-----IP---EEDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred HHHHHHHHHcCccceeeecc-----cC---CchHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 46677778899998766443 22 224556899999999999999999999996
No 124
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=81.93 E-value=14 Score=38.84 Aligned_cols=224 Identities=13% Similarity=0.155 Sum_probs=109.7
Q ss_pred HHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEE-EecCCCCCCCCCCCCCCCCCCCCCCC----
Q 046395 190 SQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVI-VDLHALRVSQNGSPHSGSRDGFQEWS---- 264 (535)
Q Consensus 190 k~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VI-ldlH~~pg~~ng~~~sg~~~~~~~W~---- 264 (535)
++.|+|-||--.-| .......- | .+.++|++++....+|+-.| ++||.-. -++ ..+ .|.
T Consensus 15 ~Ei~v~yi~~~~v~-h~~~q~~~--~---~~t~~d~i~d~~~~~~~~~ie~~l~~~~-l~~-~~~--------~wq~n~~ 78 (428)
T COG3664 15 DEIQVNYIRRHGVW-HVNAQKLF--Y---PFTYIDEIIDTLLDLGLDLIELFLIWNN-LNT-KEH--------QWQLNVD 78 (428)
T ss_pred hhhceeeehhccee-eeeecccc--C---ChHHHHHHHHHHHHhccHHHHHhhcccc-hhh-hhh--------hcccccC
Confidence 46777777653322 21111111 2 56889999999999995433 3334210 000 000 222
Q ss_pred --hHHHHHHHHHHHHHHHHhCCC-CcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC-CChhhh
Q 046395 265 --DSDIQETVAIIDFLASRYADH-PSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLG-GEWSEL 340 (535)
Q Consensus 265 --~~~~~~~~~~~~~la~ry~~~-p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g-~~~~~~ 340 (535)
....+....++..++.+|+-. -....+++.|||... .....+.+.|..++ |+..|. |-+++.|. .....+
T Consensus 79 ~~~~~~dl~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~-ad~~eyfk~y~~~a---~~~~p~--i~vg~~w~~e~l~~~ 152 (428)
T COG3664 79 DPKSVFDLIAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL-ADKQEYFKLYDATA---RQRAPS--IQVGGSWNTERLHEF 152 (428)
T ss_pred CcHhHHHHHHHHHHHHHHHhChhheeecceeecCCCCcc-cchHHHHHHHHhhh---hccCcc--eeeccccCcHHHhhh
Confidence 247788899999999999843 256779999999974 33334444443333 344442 33444342 111222
Q ss_pred hcccCCCCcEEEEEeecCcCCCcccCCChhh--------hHHHHHHhhhHHHHHHhhcCCCcEEEeccCCCcCCCCCCHH
Q 046395 341 LSFASNLSRVVIDVHFYNLFWDNFNKMSVQQ--------NIDYIYRQRSSDLRNVTTSDGPLSFVGEWSCEWEAEGASKR 412 (535)
Q Consensus 341 ~~~~~~~~n~v~d~H~Y~~~~~~~~~~~~~~--------~i~~i~~~~~~~l~~~~~~~~p~v~vGEfg~~~~~~~~~~~ 412 (535)
.. ..+.-..++.|.|.....+++.++.+. .++..+.- ...+... . -+.|.++.||....+.......
T Consensus 153 ~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~r~~-~d~i~~~-~-~~~pl~~~~wntlt~~~~~~n~ 227 (428)
T COG3664 153 LK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDLRGL-KDLIQHH-S-LGLPLLLTNWNTLTGPREPTNG 227 (428)
T ss_pred hh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhhHHHHH-HHHHHhc-c-CCCcceeecccccCCCccccCc
Confidence 22 334455667788865433344333221 12222221 1112111 1 1346899999765443222222
Q ss_pred HHH--HHHHHHHHHHhhCCcceEEEeeeeC
Q 046395 413 DYQ--RFAEAQLDVYGRATFGWAYWAYKFA 440 (535)
Q Consensus 413 ~~~--~~~~~ql~~~~~~~~Gw~~W~~k~~ 440 (535)
.|. .++-.++.-.+..-.+..||++..-
T Consensus 228 sy~raa~i~~~Lr~~g~~v~a~~yW~~sdl 257 (428)
T COG3664 228 SYVRAAYIMRLLREAGSPVDAFGYWTNSDL 257 (428)
T ss_pred eeehHHHHHHHHHhcCChhhhhhhhhcccc
Confidence 222 2333222222222235557776543
No 125
>PLN02784 alpha-amylase
Probab=81.49 E-value=4.5 Score=46.71 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCC---C--c--cchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKP---F--V--GGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~---~--~--~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+.++.|+++|+++|=||=..... .+....+ | + -+..+.|..+|+.|+++||+||+|+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 677999999999999986533211 1100011 1 1 1467899999999999999999998
No 126
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=81.23 E-value=10 Score=41.12 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=75.6
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCC-EEEEecC-CCCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGM-KVIVDLH-ALRVSQNGSPHSG 255 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi-~VIldlH-~~pg~~ng~~~sg 255 (535)
..++++.++.|+++|+|.|-|+|-- + ++..-..+. ....+.+.++++.+++.|+ .|-+|+- +.||
T Consensus 147 ~~lt~e~l~~l~~aG~~risiGvqS--~-~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg--------- 214 (453)
T PRK09249 147 RELDLEMLDALRELGFNRLSLGVQD--F-DPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK--------- 214 (453)
T ss_pred CcCCHHHHHHHHHcCCCEEEECCCC--C-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC---------
Confidence 3578999999999999988887632 2 110000000 1256778889999999999 6878875 4443
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCCCc
Q 046395 256 SRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP----------DLKLDSLKTYYKAGYDTVRKYSSSA 325 (535)
Q Consensus 256 ~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~~ 325 (535)
++.+.+.+.++.+.+.-- ..|-.+.+...|... -.+.+.....+..+.+.+.+.+=.+
T Consensus 215 ----------qt~e~~~~~l~~~~~l~~--~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 215 ----------QTPESFARTLEKVLELRP--DRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred ----------CCHHHHHHHHHHHHhcCC--CEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 345566666666655222 245445555555421 1234566677777777777765444
No 127
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=80.38 E-value=1.1 Score=40.73 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCceEEEecCCccCCccccCC
Q 046395 508 SKREDGIKNLKEFGDDYYRPS 528 (535)
Q Consensus 508 ~~~~~~~k~v~~~~~~~f~~~ 528 (535)
++.++|+|||| .|||||+|-
T Consensus 32 g~~i~a~k~Vt-~nepfF~gH 51 (147)
T COG0764 32 GKRIVAIKNVT-INEPFFTGH 51 (147)
T ss_pred CcEEEEEEccC-CCCCeeCCc
Confidence 56788999999 999999973
No 128
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=80.30 E-value=9.1 Score=34.52 Aligned_cols=64 Identities=19% Similarity=0.410 Sum_probs=47.2
Q ss_pred cCCeEEEEeeCCcEEEeecCCCeEEEeccCCCCCCceEEEecCCCCceeEEEecCCceEEEecc
Q 046395 62 NETFYNFRLSNKQFIGLENQGNKLVAVSATEKFPEPFQITRKNGEPHRVRFRASNGYFLQAKSE 125 (535)
Q Consensus 62 ~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~I~~~nG~flq~~~~ 125 (535)
+...+.||+..++|+.|+..+.+|.=.+.-....-.|.+.+-.++...|++++.-|.||-+...
T Consensus 6 d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~ 69 (142)
T PF04601_consen 6 DGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDE 69 (142)
T ss_pred CCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCC
Confidence 6778899999999999987334455555556667777654444445679999988999988644
No 129
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=79.52 E-value=89 Score=33.12 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=77.7
Q ss_pred cchHHHHHHHHHcCCCEEEeCC------ccccccCCCCCCCCcc----chHHHHHHHHHHHHHcCCEEEEecCC----CC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPV------GWWIAYDPKPPKPFVG----GSLQALDNAFRWAQKYGMKVIVDLHA----LR 245 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv------~~w~~~~p~~~~~~~~----~~l~~ld~~i~~a~~~Gi~VIldlH~----~p 245 (535)
|-.++-++.+|++|++-|=+-- .-|. ..- ..|+. -.-+.+.++.++|+++||++-+-+.. .|
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~---S~~-t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p 156 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWD---SKY-SNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNP 156 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCCccccC---CCC-CCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCC
Confidence 4457888889999999987622 1121 110 01221 14588999999999999999984331 11
Q ss_pred CCCCCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 046395 246 VSQNGSPHSGSRDGFQEWS--DSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 246 g~~ng~~~sg~~~~~~~W~--~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
...... ........+. .++.+.+..-+++|..+|+. .++-++...+-. ...+ -.+++++.||+..|
T Consensus 157 ~y~~~~---~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygp--d~lWfD~~~~~~-----~~~~--~~~~l~~~~~~~qP 224 (384)
T smart00812 157 LYAGPT---SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKP--DLLWFDGGWEAP-----DDYW--RSKEFLAWLYNLSP 224 (384)
T ss_pred cccccc---ccccccccchhHHHHHHHHHHHHHHHHhcCCC--ceEEEeCCCCCc-----cchh--cHHHHHHHHHHhCC
Confidence 110000 0000011111 23333347788889999976 666677643311 1111 25678889999999
Q ss_pred Cc-EEEEcCCC
Q 046395 324 SA-YVILSNRL 333 (535)
Q Consensus 324 ~~-~ii~~~~~ 333 (535)
+. -|++.+++
T Consensus 225 ~~~~vvvn~R~ 235 (384)
T smart00812 225 VKDTVVVNDRW 235 (384)
T ss_pred CCceEEEEccc
Confidence 86 23444555
No 130
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=78.60 E-value=6.3 Score=45.56 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEe-CCccccc------cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGWWIA------YDPKPPKPFVG--GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~w~~------~~p~~~~~~~~--~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-+..|+++|+++|=+ |+. ... .++......++ +..+.++++++.|+++||+||+|+
T Consensus 19 ~~~L~YL~~LGv~~V~lsPi~-~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 19 AALLPYLKSLGVSHLYLSPIL-TAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHhhHHHHHcCCCEEEeCcCc-cCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 58899999999999976 332 110 00000000111 468999999999999999999998
No 131
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=78.18 E-value=4.1 Score=44.25 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEe-CCccc----cccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 184 EDFKFMSQNGLNAVRI-PVGWW----IAYDPKPPKPF--VGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRi-pv~~w----~~~~p~~~~~~--~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
+-++.|+++|+++|=| |+..- ........... .-+..+.++++++.|+++||+||+|+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7789999999999965 33221 00000000001 12578999999999999999999999
No 132
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=78.15 E-value=1.6 Score=40.60 Aligned_cols=18 Identities=0% Similarity=-0.082 Sum_probs=16.1
Q ss_pred ceEEEecCCccCCccccCC
Q 046395 510 REDGIKNLKEFGDDYYRPS 528 (535)
Q Consensus 510 ~~~~~k~v~~~~~~~f~~~ 528 (535)
+++|.|+|+ .||+||+|-
T Consensus 51 ~i~a~k~Vs-~~e~ff~gH 68 (169)
T TIGR01749 51 YVEAELDIR-PDLWFFGCH 68 (169)
T ss_pred EEEEEEEcC-CCCcceeCC
Confidence 799999999 999998663
No 133
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=77.05 E-value=50 Score=29.47 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=62.2
Q ss_pred eeEEEEeecCcEEEEecCCCceEEe-ccCCCCCCCCceeEEEEecCCeEEEEe-eCCcEEEeecCCCeEEEeccCC-CCC
Q 046395 19 QVQLISTKLKKYLTAENGSETILMA-NHNSSSTSSWQTFRLWRINETFYNFRL-SNKQFIGLENQGNKLVAVSATE-KFP 95 (535)
Q Consensus 19 ~~~~~~~~~~~~~~a~~~g~~~~~a-nr~~~~~~~we~f~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~a~~~~~-~~~ 95 (535)
-|.|||= |||||.+...++-+.+= .-+.+ -.+--.|++-...++.+.+|. ++|+|.... .+=+.|.++.| ...
T Consensus 7 ~V~FKg~-n~kYLry~~~~~~~~lqf~~ddI-~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s--~~WI~a~s~d~~e~~ 82 (139)
T smart00791 7 YVLFKGN-NQKYLRYQSIQQYGLLQFSADKI-LDPLVQFEVFPTYNGLVHIKSNYTNKFWRLS--HYWITADANDPDENK 82 (139)
T ss_pred EEEEEcC-CCceEEEEeecccceeEeccccc-CCcceeEEEEEcCCCcEEEEecCCCceEccC--CCEEEecCCCCccCC
Confidence 5899998 99999988765554431 11111 134445666668889999995 599999775 44588888877 222
Q ss_pred ---CceEEEecCCCCceeEEEec-CCceEEE
Q 046395 96 ---EPFQITRKNGEPHRVRFRAS-NGYFLQA 122 (535)
Q Consensus 96 ---e~f~~~~~~~~~~~v~I~~~-nG~flq~ 122 (535)
.-|.-++-+ -+.++++.- +|.|+.-
T Consensus 83 sscTLF~Pv~~d--~~~i~lr~vq~~~~~~r 111 (139)
T smart00791 83 SACTLFRPLYVE--MKKIRLLNVQLGHYTKR 111 (139)
T ss_pred CcccEEeEEecc--CceEEEEEecCCceEEe
Confidence 236655543 235666653 3666643
No 134
>PRK14565 triosephosphate isomerase; Provisional
Probab=76.37 E-value=42 Score=33.05 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
|=-...||++|++.+=|.=+ +. ..-|.+ .-+.+.+=+..|.++||.+|+++--.--
T Consensus 75 evS~~mLkd~G~~~viiGHS-----ER--R~~f~E-td~~V~~Kv~~al~~gl~pIvCiGE~~e---------------- 130 (237)
T PRK14565 75 EISAKMLKECGCSYVILGHS-----ER--RSTFHE-TDSDIRLKAESAIESGLIPIICVGETLE---------------- 130 (237)
T ss_pred ccCHHHHHHcCCCEEEECcc-----cc--cCcCCc-CHHHHHHHHHHHHHCCCEEEEEcCCCHH----------------
Confidence 44567889999999877322 11 111222 2233444458999999999998763100
Q ss_pred CChHHHHHHHH-HHHHHHHHhCC-CCcEEEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC-CChh
Q 046395 263 WSDSDIQETVA-IIDFLASRYAD-HPSLVAIELMNEPKAP-DLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLG-GEWS 338 (535)
Q Consensus 263 W~~~~~~~~~~-~~~~la~ry~~-~p~V~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g-~~~~ 338 (535)
......+.+ ..+++..-+.+ .+-|++| ||.+. +.....-.+.+++++..||+...+..|+.++.-. .+..
T Consensus 131 --~r~~~~~~~~~~~Ql~~~l~~~~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~ 204 (237)
T PRK14565 131 --DRENGMTKDVLLEQCSNCLPKHGEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIR 204 (237)
T ss_pred --HHHccChHHHHHHHHHHHhcCCCCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHH
Confidence 000111111 12233332322 2455665 67652 1111123456888899999987777788776543 4455
Q ss_pred hhhcc
Q 046395 339 ELLSF 343 (535)
Q Consensus 339 ~~~~~ 343 (535)
++...
T Consensus 205 ~l~~~ 209 (237)
T PRK14565 205 DLKSI 209 (237)
T ss_pred HHhcC
Confidence 55553
No 135
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=76.33 E-value=8 Score=45.02 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc------cCCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA------YDPKPPKPFVG--GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~------~~p~~~~~~~~--~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-+..|+++|+++|=++=-+... .++......++ +..+.++++++.|+++||+||+|+
T Consensus 23 ~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 23 AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 588899999999999873211110 01000000111 467899999999999999999999
No 136
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=74.74 E-value=5.7 Score=38.97 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCC----------CCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 046395 266 SDIQETVAIIDFLASRYADH---PSLVAIELMNEPKA----------PDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNR 332 (535)
Q Consensus 266 ~~~~~~~~~~~~la~ry~~~---p~V~~~el~NEP~~----------~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~ 332 (535)
.+.+.+ +..|..+|+.- ..|-+|.|-|||.. .+.+.+.+..-+-+..++||+.+|...|+-...
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~GP~~ 180 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFGPVE 180 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEeechh
Confidence 345544 55566666553 46999999999964 134567788888888999999999998664334
Q ss_pred CC
Q 046395 333 LG 334 (535)
Q Consensus 333 ~g 334 (535)
||
T Consensus 181 wg 182 (239)
T PF12891_consen 181 WG 182 (239)
T ss_dssp -S
T ss_pred hc
Confidence 53
No 137
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=74.69 E-value=25 Score=37.35 Aligned_cols=122 Identities=18% Similarity=0.122 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH-ALRVSQNGSPHS 254 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH-~~pg~~ng~~~s 254 (535)
..++.+.++.|+++|+|-|=|.|- .+.+.. -+.. ...+.+.++++++++.+..|-+|+- +.||
T Consensus 118 ~~~~~e~L~~l~~~GvnrisiGvQ--S~~~~~L~~l~R~---~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg-------- 184 (394)
T PRK08898 118 GTFEAEKFAQFRASGVNRLSIGIQ--SFNDAHLKALGRI---HDGAEARAAIEIAAKHFDNFNLDLMYALPG-------- 184 (394)
T ss_pred CCCCHHHHHHHHHcCCCeEEEecc--cCCHHHHHHhCCC---CCHHHHHHHHHHHHHhCCceEEEEEcCCCC--------
Confidence 456789999999999996666552 221110 0111 1345677788888888888888885 4443
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-------DLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-------~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
+..+.+.+-++.+.+ ++ -+.|-.+.+.=||..+ -...+.....++.+.+.+++.+-.++
T Consensus 185 -----------qt~~~~~~~l~~~~~-l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y 250 (394)
T PRK08898 185 -----------QTLDEALADVETALA-FG-PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHY 250 (394)
T ss_pred -----------CCHHHHHHHHHHHHh-cC-CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchh
Confidence 234445554555544 22 1366667777777542 11234556677777778877775554
No 138
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.78 E-value=13 Score=37.22 Aligned_cols=59 Identities=7% Similarity=0.140 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++..+++|+..|+++-..+ ...+.. ........+.|+.+.+.|+++|+.+.+..|.
T Consensus 102 ~~~i~~a~~lG~~~i~~~~~~~-~~~~~~-~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAGYDV-YYEQAN-NETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHHcCCCEEEECCccc-cccccH-HHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 6888999999999999852110 000100 0011224678899999999999999998873
No 139
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=73.70 E-value=14 Score=40.08 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=71.4
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPHSG 255 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~sg 255 (535)
..++++.++.|+++|+|.|-|.|- .+.+..- .... ....+.+.++++.+++.|+. |-+|+- +.||
T Consensus 147 ~~l~~e~l~~lk~~G~~risiGvq--S~~~~~l-~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg--------- 214 (455)
T TIGR00538 147 RYITKDVIDALRDEGFNRLSFGVQ--DFNKEVQ-QAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPK--------- 214 (455)
T ss_pred CcCCHHHHHHHHHcCCCEEEEcCC--CCCHHHH-HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCC---------
Confidence 346799999999999997777653 2211000 0000 12467788899999999996 667765 4443
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC----------CCChHHHHHHHHHHHHHHHhcCCC
Q 046395 256 SRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP----------DLKLDSLKTYYKAGYDTVRKYSSS 324 (535)
Q Consensus 256 ~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR~~~p~ 324 (535)
++.+.+.+.++.+.+.--+ .|..|.+.=+|... ..+.+...+.++.+.+.+++.+=.
T Consensus 215 ----------qt~e~~~~tl~~~~~l~~~--~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 215 ----------QTKESFAKTLEKVAELNPD--RLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred ----------CCHHHHHHHHHHHHhcCCC--EEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 3455666666666552222 34434442233210 123456667777777777776543
No 140
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.42 E-value=1.1e+02 Score=31.95 Aligned_cols=146 Identities=10% Similarity=0.034 Sum_probs=79.1
Q ss_pred chHHHHHHHHHcCCCEEEeCCcc---ccccC---CC---C---------------------CCCCccchHHHHHHHHHHH
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGW---WIAYD---PK---P---------------------PKPFVGGSLQALDNAFRWA 230 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~---w~~~~---p~---~---------------------~~~~~~~~l~~ld~~i~~a 230 (535)
..++-++.|+..++|.+-+-+.= |.+.- |. . ++.| ..+.+.++++.|
T Consensus 19 ~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~Y---T~~di~eiv~yA 95 (357)
T cd06563 19 EVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFY---TQEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceE---CHHHHHHHHHHH
Confidence 34678889999999999875520 11100 10 0 1112 478999999999
Q ss_pred HHcCCEEEEecCCCCCCCCC-------CCCCC----------CCCCCCCC-ChHHHHHHHHHHHHHHHHhCCCCcEEEEE
Q 046395 231 QKYGMKVIVDLHALRVSQNG-------SPHSG----------SRDGFQEW-SDSDIQETVAIIDFLASRYADHPSLVAIE 292 (535)
Q Consensus 231 ~~~Gi~VIldlH~~pg~~ng-------~~~sg----------~~~~~~~W-~~~~~~~~~~~~~~la~ry~~~p~V~~~e 292 (535)
+++||.||..+-. ||.... ..... ...+...- .++..+-..++++++++-|...---+|=+
T Consensus 96 ~~rgI~VIPEID~-PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~~~~iHiGgD 174 (357)
T cd06563 96 AERGITVIPEIDM-PGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELFPSPYIHIGGD 174 (357)
T ss_pred HHcCCEEEEecCC-chhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEecc
Confidence 9999999977632 111000 00000 00000011 15677777888888888886422112222
Q ss_pred eecCCCCCC-------------CCh-HHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 293 LMNEPKAPD-------------LKL-DSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 293 l~NEP~~~~-------------~~~-~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
=.+.-.... .+. +.+..|.+++.+.+++.+ ..++++.+
T Consensus 175 E~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G-~~~i~W~d 226 (357)
T cd06563 175 EVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKG-KKMIGWDE 226 (357)
T ss_pred ccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-CEEEEeec
Confidence 111111100 022 344567889999999876 44455544
No 141
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=73.36 E-value=41 Score=34.51 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=60.1
Q ss_pred CccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccc-hHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCCCCC
Q 046395 178 KSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGG-SLQALDNAFRWAQKYGMKVIVDLH-ALRVSQNGSPHSG 255 (535)
Q Consensus 178 ~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~-~l~~ld~~i~~a~~~Gi~VIldlH-~~pg~~ng~~~sg 255 (535)
...++++.++.|+++|++ +||.++.+...+..-....+.+ ..+.+.++++.++++||.|..++- +.|+..
T Consensus 112 pd~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~~s------- 183 (313)
T TIGR01210 112 PEFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFKPPFLS------- 183 (313)
T ss_pred CCcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCC-------
Confidence 456789999999999988 3455554433221000001111 567788999999999999888764 333200
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 046395 256 SRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPK 298 (535)
Q Consensus 256 ~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~ 298 (535)
. .+..+.+.+.++.+.. ++ ..|-.+-+.=+|.
T Consensus 184 -----e---~ea~ed~~~ti~~~~~-l~--~~vs~~~l~v~~g 215 (313)
T TIGR01210 184 -----E---KEAIADMISSIRKCIP-VT--DTVSINPTNVQKG 215 (313)
T ss_pred -----h---hhhHHHHHHHHHHHHh-cC--CcEEEECCEEeCC
Confidence 0 1456666667776665 44 3554444444554
No 142
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=73.08 E-value=1.3e+02 Score=31.74 Aligned_cols=228 Identities=18% Similarity=0.243 Sum_probs=109.2
Q ss_pred HcCCCEEEeCCccccccC------CCCCC----CC--ccchHHHHHHHHHHHHHc---CCEEEEecCCCCCCCCCCCC-C
Q 046395 191 QNGLNAVRIPVGWWIAYD------PKPPK----PF--VGGSLQALDNAFRWAQKY---GMKVIVDLHALRVSQNGSPH-S 254 (535)
Q Consensus 191 ~~G~N~VRipv~~w~~~~------p~~~~----~~--~~~~l~~ld~~i~~a~~~---Gi~VIldlH~~pg~~ng~~~-s 254 (535)
-+|.|..|+||..=.+.. ..+.. .| .++.++.=--.|+.|.++ +|+..-.-..+|| |.- .
T Consensus 135 Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsPWsaPg----WlKtt 210 (518)
T KOG2566|consen 135 GLGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASPWSAPG----WLKTT 210 (518)
T ss_pred CccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecCCCCCc----eeeec
Confidence 368899999996422111 11100 01 122333323345555544 4666555555554 321 1
Q ss_pred CCCCCCCCCC----hHHHHHHHHHHHHHHHHhCCCC-cEEEEEeecCCCCC----------CCChHHHHHHHHHHHHHHH
Q 046395 255 GSRDGFQEWS----DSDIQETVAIIDFLASRYADHP-SLVAIELMNEPKAP----------DLKLDSLKTYYKAGYDTVR 319 (535)
Q Consensus 255 g~~~~~~~W~----~~~~~~~~~~~~~la~ry~~~p-~V~~~el~NEP~~~----------~~~~~~~~~~~~~~~~aIR 319 (535)
|...|...-. +.+-+.+++++-+..+.|..+. ...+...-|||... ..+.+.-++|++.-+.-..
T Consensus 211 g~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaL 290 (518)
T KOG2566|consen 211 GRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPAL 290 (518)
T ss_pred ccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhh
Confidence 2222211110 3566666777777777787764 33445568999863 2345667788776654333
Q ss_pred hcC---CCcEEE-EcCCCC--CCh-hhhhcccC-CCCcEEEEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcC
Q 046395 320 KYS---SSAYVI-LSNRLG--GEW-SELLSFAS-NLSRVVIDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSD 391 (535)
Q Consensus 320 ~~~---p~~~ii-~~~~~g--~~~-~~~~~~~~-~~~n~v~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~ 391 (535)
+.. .+..++ +.+.-| ..| ..++..+. ..----+.+|.|..|... +.+++. - ..+
T Consensus 291 a~s~~~knvkllilDD~Rg~LP~WadtvlnDpeAakYv~GIaVHwY~df~~p------a~~L~e-----------T-h~~ 352 (518)
T KOG2566|consen 291 ASSKTTKNVKLLILDDQRGLLPHWADTVLNDPEAAKYVHGIAVHWYQDFLEP------AKHLDE-----------T-HRK 352 (518)
T ss_pred hcCCcCCceEEEEecCCccCCCccchhhccChhhhhhccceEEEeeccccCh------hhhhhh-----------H-Hhh
Confidence 333 233333 343221 111 12222111 111224789999875421 112211 1 112
Q ss_pred CCcE--EEeccCCC---cC-CCCCCHHHHHHHHHHHHHHHhhCCcceEEEeeeeC
Q 046395 392 GPLS--FVGEWSCE---WE-AEGASKRDYQRFAEAQLDVYGRATFGWAYWAYKFA 440 (535)
Q Consensus 392 ~p~v--~vGEfg~~---~~-~~~~~~~~~~~~~~~ql~~~~~~~~Gw~~W~~k~~ 440 (535)
.|-. |-.|=+.. ++ +.-++.+.-.+|....++-+...--||.=|.+--+
T Consensus 353 hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~vtGWtdwNl~Ld 407 (518)
T KOG2566|consen 353 HPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNHVTGWTDWNLILD 407 (518)
T ss_pred CCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhhccceeeeeeEec
Confidence 3433 33454322 11 22233344456777667666655579999987664
No 143
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=72.53 E-value=46 Score=34.47 Aligned_cols=141 Identities=14% Similarity=0.187 Sum_probs=81.6
Q ss_pred hHHHHHHHHHcCCCEEEeCCcc---cccc-C--CC-------------CCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGW---WIAY-D--PK-------------PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~---w~~~-~--p~-------------~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.++.++.|+..++|.+-+-+.= |.+. . |. +++.| ..+.+.++++.|+++||.||..+-
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y---T~~di~elv~yA~~rgI~vIPEiD 96 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY---TQEDYKDIVAYAAERHITVVPEID 96 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC---CHHHHHHHHHHHHHcCCEEEEecC
Confidence 4778888999999999875520 1111 0 10 01123 578899999999999999998763
Q ss_pred C----------CCCC-CCCCCC---CCCCC--CCCCC-ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChH
Q 046395 243 A----------LRVS-QNGSPH---SGSRD--GFQEW-SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLD 305 (535)
Q Consensus 243 ~----------~pg~-~ng~~~---sg~~~--~~~~W-~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~ 305 (535)
. +|.- ..+... .+... +.... .++..+-...+++++++-|.+ + .+.+ =.-|.. ....+
T Consensus 97 ~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~-~-~iHi-GgDE~~--~~~~~ 171 (329)
T cd06568 97 MPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPG-P-YIHI-GGDEAH--STPHD 171 (329)
T ss_pred CcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCC-C-eEEE-ecccCC--CCchH
Confidence 2 1110 000000 00000 00011 156777777888888887754 2 2211 123433 22456
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 306 SLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 306 ~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
.+..|.+++.+.+++.+. .++++..
T Consensus 172 ~~~~f~~~~~~~v~~~Gk-~~~~W~d 196 (329)
T cd06568 172 DYAYFVNRVRAIVAKYGK-TPVGWQE 196 (329)
T ss_pred HHHHHHHHHHHHHHHCCC-eEEEECc
Confidence 788899999999998764 4556654
No 144
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.29 E-value=35 Score=31.78 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCEEEeCCc--cccccC--CCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVG--WWIAYD--PKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~--~w~~~~--p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
++-.+.+++.|+..+-+... +..... ..+..+ .+..++.+.++++.|++.|.+.|+-.-. . +.
T Consensus 30 ~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g---~---~~------ 96 (213)
T PF01261_consen 30 EELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSG---R---YP------ 96 (213)
T ss_dssp HHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECT---T---ES------
T ss_pred HHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCc---c---cc------
Confidence 45555667899996655332 211110 011111 3446899999999999999998663321 0 00
Q ss_pred CCCCCC-hHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcE-EEE
Q 046395 259 GFQEWS-DSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAY-VIL 329 (535)
Q Consensus 259 ~~~~W~-~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~-ii~ 329 (535)
...... .+..+.+.+.++.+++.-+.+.-.+++|....+... .... .+++...++++++..+ +.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~i~~ 163 (213)
T PF01261_consen 97 SGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSE--TPFS----VEEIYRLLEEVDSPNVGICF 163 (213)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSS--EESS----HHHHHHHHHHHTTTTEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcccc--chhh----HHHHHHHHhhcCCCcceEEE
Confidence 000111 367778888888888776655556666655444421 1111 5677778888885543 444
No 145
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=71.75 E-value=28 Score=30.56 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=48.0
Q ss_pred CCCceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeE-EEEee---CCcEEEeecCCCeEEEecc
Q 046395 15 LDGTQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFY-NFRLS---NKQFIGLENQGNKLVAVSA 90 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~-~~~~~---~~~~v~~~~~~~~~~a~~~ 90 (535)
++...|.||+++.++|||-..-| .|.+.+ . ..-|....-.+.++-| .++.. .+.||+++.+|-.-.+.++
T Consensus 37 ~~~g~v~i~~v~s~~YLCmn~~G--~ly~s~--~--~~~dC~F~E~~~~n~Y~~y~S~~~~~~~ylal~~~G~~rr~~~~ 110 (123)
T cd00058 37 VAVGVVSIKGVASCRYLCMNKCG--KLYGSK--G--FTEECLFREELLENNYNTYASAKYRRRWYLALNKKGRPRRGQLT 110 (123)
T ss_pred CCCCEEEEEEcccceEEEECCCC--CEEECC--C--CCCCCEEEEEEccCCcEEEEEcccCCCcEEEECCCCCCcccccc
Confidence 35678999999999999999766 566665 2 3566666666666544 44443 4799999873333444444
Q ss_pred CC
Q 046395 91 TE 92 (535)
Q Consensus 91 ~~ 92 (535)
.+
T Consensus 111 ~~ 112 (123)
T cd00058 111 KK 112 (123)
T ss_pred CC
Confidence 44
No 146
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=70.26 E-value=6.8 Score=37.67 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCCCceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEEeeCCcEEEeecCCCeEEEeccCCC
Q 046395 14 LLDGTQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFRLSNKQFIGLENQGNKLVAVSATEK 93 (535)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~ 93 (535)
++| .+|+||| -.||||+-+.-| -||+-..++ ++=|+|.... -++.+.|-.+|++|..++-.++.-+|.++.-.
T Consensus 91 i~d-srIaLKs-GyGKYlsinsdg--lvvg~qeAv--G~~EQw~~vF-q~~r~a~~as~s~~~~~~e~~d~~va~kt~t~ 163 (246)
T KOG3962|consen 91 ISD-SRIALKS-GYGKYLSINSDG--LVVGRQEAV--GSREQWEPVF-QEGRMALLASNSCFIRCNEAGDAEVASKTATE 163 (246)
T ss_pred ccC-ceEEecc-cccceeeecCCc--cEEEehhhc--CcHhhchhhh-hccceEEeeccceeEEechhhchhhhcccCCC
Confidence 466 8999996 589999999876 788888888 9999988877 46778888889999999654666666665443
No 147
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=69.83 E-value=28 Score=38.40 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=42.4
Q ss_pred hCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 177 WKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 177 w~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.+..++++.++.|+++|+|.|=|.| ..+.+..- .... .-..+.+.++++.++++|++|.++|-
T Consensus 200 RPD~i~~e~L~~L~~~G~~rVslGV--QS~~d~VL-~~inRght~~~v~~Ai~~lr~~G~~v~~~LM 263 (522)
T TIGR01211 200 RPDYCREEHIDRMLKLGATRVELGV--QTIYNDIL-ERTKRGHTVRDVVEATRLLRDAGLKVVYHIM 263 (522)
T ss_pred cCCcCCHHHHHHHHHcCCCEEEEEC--ccCCHHHH-HHhCCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 4557899999999999998665544 22211100 0000 11567888899999999999887774
No 148
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=69.83 E-value=3.6 Score=38.40 Aligned_cols=18 Identities=0% Similarity=-0.236 Sum_probs=16.2
Q ss_pred ceEEEecCCccCCccccCC
Q 046395 510 REDGIKNLKEFGDDYYRPS 528 (535)
Q Consensus 510 ~~~~~k~v~~~~~~~f~~~ 528 (535)
+++|.|+|+ .||+||+|-
T Consensus 54 ~i~a~k~v~-~~e~ff~gH 71 (172)
T PRK05174 54 YIVAELDIN-PDLWFFGCH 71 (172)
T ss_pred EEEEEEECC-CCCccccCC
Confidence 699999999 999999863
No 149
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=69.60 E-value=47 Score=34.02 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=54.5
Q ss_pred hCccchHHHHHHHHHcCCCEEEeCCccccccCCCC----CCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCC
Q 046395 177 WKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKP----PKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSP 252 (535)
Q Consensus 177 w~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~----~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~ 252 (535)
|+..-..+-|++|++.|+|+.=.. .--+|.- .++|.++.++.|.++++.|++.|+..+..+|- |...
T Consensus 12 Ws~e~R~~l~~f~~~~kmN~YiYA----PKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP--g~~~--- 82 (306)
T PF07555_consen 12 WSHEDRLDLIRFLGRYKMNTYIYA----PKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP--GLDI--- 82 (306)
T ss_dssp --HHHHHHHHHHHHHTT--EEEE------TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG--TTT----
T ss_pred CCHHHHHHHHHHHHHcCCceEEEC----CCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc--cccc---
Confidence 433334678889999999986431 0011110 13566778999999999999999999999994 2110
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEee
Q 046395 253 HSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELM 294 (535)
Q Consensus 253 ~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~ 294 (535)
+ + .+.+....+.+++.+-|.- .|-.|-|+
T Consensus 83 --------~-~--s~~~d~~~L~~K~~ql~~l--Gvr~Fail 111 (306)
T PF07555_consen 83 --------C-Y--SSEEDFEALKAKFDQLYDL--GVRSFAIL 111 (306)
T ss_dssp ----------T--SHHHHHHHHHHHHHHHHCT--T--EEEEE
T ss_pred --------c-c--CcHHHHHHHHHHHHHHHhc--CCCEEEEe
Confidence 0 1 2456666777777776655 34444444
No 150
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=69.16 E-value=7.6 Score=36.36 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHAL 244 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~ 244 (535)
++.++.++.+|+..++++.+.+..........-.....+.|+++++.|+++|+.+.|..|..
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 78899999999999999876311111100000112367788999999999999999988864
No 151
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=69.04 E-value=34 Score=36.30 Aligned_cols=49 Identities=18% Similarity=0.460 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
++||+..++.||..+=|-++. ..++ ..+.|..+++.|++.|.+++|.+-
T Consensus 20 ~~di~~A~~~GIDgFaLNig~--------~d~~---~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 20 EADIRLAQAAGIDGFALNIGS--------SDSW---QPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHcCCCEEEEeccc--------CCcc---cHHHHHHHHHHHHhcCCEEEEEec
Confidence 899999999999999987652 1123 568999999999999999998664
No 152
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=67.94 E-value=60 Score=33.34 Aligned_cols=59 Identities=17% Similarity=0.351 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCCEEEeCC----cccccc--CCC------CCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPV----GWWIAY--DPK------PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv----~~w~~~--~p~------~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
.++-++.|+..++|.+-+-+ +|..-. -|. .++.| .-+.+.++++.|+++||.||..+-.
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y---T~~di~elv~yA~~rgI~vIPEId~ 90 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY---TQEQIREVVAYARDRGIRVVPEIDV 90 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc---CHHHHHHHHHHHHHcCCEEEEeecC
Confidence 36788899999999888755 231111 111 11224 5788999999999999999987753
No 153
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=67.65 E-value=15 Score=45.92 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCC--------cc--chHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPF--------VG--GSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~--------~~--~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.+-+..|+++|+++|=+.=-+... +.....| ++ +..+.++++++.|+++||+||+|+-
T Consensus 761 ~~~l~Yl~~LGv~~i~lsPi~~a~--~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 761 EAILPYLAALGISHVYASPILKAR--PGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHhHHHHHcCCCEEEECCCcCCC--CCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 577889999999999773212110 0000001 11 4688999999999999999999993
No 154
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=67.44 E-value=28 Score=35.39 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC-CCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA-LRVSQNGSPHSGSRDGFQ 261 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~-~pg~~ng~~~sg~~~~~~ 261 (535)
.+.-+.+++.|+|.|=|- -....+ .-....+++.+.++-+..+.|||+|.|.+.- .|-.-.+. ...
T Consensus 60 ~~YARllASiGINgvvlN-----NVNa~~-~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL------~Ta- 126 (328)
T PF07488_consen 60 RDYARLLASIGINGVVLN-----NVNANP-KLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGGL------PTA- 126 (328)
T ss_dssp HHHHHHHHHTT--EEE-S------SS--C-GGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-------S---
T ss_pred HHHHHHHhhcCCceEEec-----ccccCh-hhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCCc------CcC-
Confidence 466778899999999872 111111 1133458999999999999999999998863 33211111 011
Q ss_pred CCChHHHHHHHHHHHHHHHH-hCCCCcEEEEEeecC
Q 046395 262 EWSDSDIQETVAIIDFLASR-YADHPSLVAIELMNE 296 (535)
Q Consensus 262 ~W~~~~~~~~~~~~~~la~r-y~~~p~V~~~el~NE 296 (535)
+..-....++|+..+++ |+--|..-||-+-=.
T Consensus 127 ---DPld~~V~~WW~~k~~eIY~~IPDfgGflVKAd 159 (328)
T PF07488_consen 127 ---DPLDPEVRQWWKDKADEIYSAIPDFGGFLVKAD 159 (328)
T ss_dssp ----TTSHHHHHHHHHHHHHHHHH-TT--EEEE--S
T ss_pred ---CCCCHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 11224555666554443 555566666666543
No 155
>PRK09936 hypothetical protein; Provisional
Probab=67.24 E-value=42 Score=33.92 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCEEEeCCcccccc-CCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC-
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAY-DPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF- 260 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~-~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~- 260 (535)
++-++.++..|++++=+- |... +. .|- +.--.|-+.++.|.+.||+|+|-|+..|.-. .+- ..++.
T Consensus 41 q~~~~~~~~~G~~tLivQ---Wt~yG~~----~fg-~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~---q~~-~~d~~~ 108 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQ---WTRYGDA----DFG-GQRGWLAKRLAAAQQAGLKLVVGLYADPEFF---MHQ-KQDGAA 108 (296)
T ss_pred HHHHHHHHHcCCcEEEEE---eeeccCC----Ccc-cchHHHHHHHHHHHHcCCEEEEcccCChHHH---HHH-hcCchh
Confidence 788999999999999773 3332 21 121 1346788899999999999999999765311 010 00110
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 261 -QEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 261 -~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
..|-.....+....++.+.++..- .|.||-+==|+..
T Consensus 109 ~~~yl~~~l~~~~~qa~~~~~~~~~--~v~GWYiP~ElDd 146 (296)
T PRK09936 109 LESYLNRQLGASLQQARLWSAAWGV--PVDGWYLPAELDD 146 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--CCCeEEeeeccch
Confidence 000011222233333333333333 3588999999885
No 156
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=66.87 E-value=57 Score=34.17 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC
Q 046395 224 DNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLK 303 (535)
Q Consensus 224 d~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~ 303 (535)
++++..|+++|++|++.- ..+. . ..=.++.++.|++-+-.++++|+=+.--+-||-..... ..+
T Consensus 67 ~~~~~~A~~~~v~v~~~~-~~~~-----~--------~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~--~~d 130 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-DVPL-----E--------QISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKG--SPE 130 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-ccCH-----H--------HcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCC--cch
Confidence 368899999999999852 1110 0 00125788888887777888875433334455322211 234
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEE
Q 046395 304 LDSLKTYYKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 304 ~~~~~~~~~~~~~aIR~~~p~~~ii~ 329 (535)
.+.+..+++++.+++++.++...+.+
T Consensus 131 ~~~~t~llkelr~~l~~~~~~~~Lsv 156 (358)
T cd02875 131 YYALTELVKETTKAFKKENPGYQISF 156 (358)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 57888899999999988766555444
No 157
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=66.59 E-value=8.2 Score=40.41 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++.+++.|+..|=..+. .|+. -.+..++.+.+++++|+++||+|++|+..
T Consensus 17 ~~yi~~a~~~Gf~~iFTSL~-----ipe~---~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 17 KAYIEKAAKYGFKRIFTSLH-----IPED---DPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHCCCCEEECCCC-----cCCC---CHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 56778888999988766442 2321 12347999999999999999999999974
No 158
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=66.33 E-value=25 Score=35.17 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++..+++|.+.||++-... ...... ........+.|.++++.|+++|+++.|..|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~-~~~~~~-~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAGYDV-YYEEHD-EETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHhCCCEEEecCccc-ccCcCC-HHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 6888888999999999853210 001000 0011235678888999999999999998763
No 159
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=64.21 E-value=1.5e+02 Score=29.19 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
|=-.+.|+++|++.|=|.=+ +. .. +-.+.-+.+.+-+..|.++||.+|+++-
T Consensus 74 evS~~mL~d~G~~~viiGHS-----ER--R~-~f~Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 74 EISAEMLKDAGAKYVIIGHS-----ER--RQ-YFGETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred cCCHHHHHHcCCCEEEeCcc-----cc--cC-cCCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 34567889999999977322 11 11 2233567888889999999999999876
No 160
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=64.19 E-value=56 Score=28.34 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=48.2
Q ss_pred EEEeeCCcEEEeecCCCeEEEeccCCCCCCceEEEecCCCCceeEEEecC-CceEEEec-ccEEe
Q 046395 67 NFRLSNKQFIGLENQGNKLVAVSATEKFPEPFQITRKNGEPHRVRFRASN-GYFLQAKS-EMQVT 129 (535)
Q Consensus 67 ~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~I~~~n-G~flq~~~-~~~v~ 129 (535)
+|=+.+++|+.+.. +|+|.++.+.......|++..-+. +.|.|+... +.||-... +.++.
T Consensus 4 ~Ly~~~~~~L~i~~-~g~V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~ 65 (122)
T PF00167_consen 4 QLYCRTGYFLQINP-NGTVDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYG 65 (122)
T ss_dssp EEEETTSEEEEEET-TSBEEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEE
T ss_pred EEEECCCeEEEECC-CCeEeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEcc
Confidence 34444699999988 889999999989999999988754 589999977 89998875 45554
No 161
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=64.18 E-value=22 Score=40.01 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEeCCcccc-----c-cCCC-CCCCCc-------c--chHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWI-----A-YDPK-PPKPFV-------G--GSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~-----~-~~p~-~~~~~~-------~--~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+.-.+.|+++|++.|=+.=.+.. . ..|. .++ |+ + +.++.++++++.|+++||+||+|+-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~g-yDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGN-FDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCC-CCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56678899999999988433322 0 0121 111 22 1 5789999999999999999999994
No 162
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=63.53 E-value=1.7e+02 Score=30.41 Aligned_cols=148 Identities=11% Similarity=0.125 Sum_probs=78.5
Q ss_pred hHHHHHHHHHcCCCEEEeCCc---cccccCCC-CC----CCCccc---hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVG---WWIAYDPK-PP----KPFVGG---SLQALDNAFRWAQKYGMKVIVDLHALRVSQNG 250 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~---~w~~~~p~-~~----~~~~~~---~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng 250 (535)
.++-++.|+..++|.+-+-+. -|.+.-+. |. +.|..+ ..+.+.++|+.|+++||.||..+-. ||....
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~-PGH~~a 98 (348)
T cd06562 20 IKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDT-PGHTGS 98 (348)
T ss_pred HHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccC-chhhHH
Confidence 477888899999999987542 11111111 10 001111 5788999999999999999977631 221100
Q ss_pred ------------CC---C-CCCC-CCCCCC-ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC-----------
Q 046395 251 ------------SP---H-SGSR-DGFQEW-SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPD----------- 301 (535)
Q Consensus 251 ------------~~---~-sg~~-~~~~~W-~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~----------- 301 (535)
.. . +... .+...- .++..+-..++++++++.|...---+|=+=.+......
T Consensus 99 ~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~~~~~w~~~p~~~~~m~~~ 178 (348)
T cd06562 99 WGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEVNFNCWNSNPEIQKFMKKN 178 (348)
T ss_pred HHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCCCCCcccCCHHHHHHHHHc
Confidence 00 0 0000 000011 15677777788888888886321112222122111100
Q ss_pred --CC-hHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 302 --LK-LDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 302 --~~-~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
.+ .+.+..|.+++.+.+++.+. .++++..
T Consensus 179 g~~~~~~l~~~f~~~~~~~l~~~Gk-~~i~W~d 210 (348)
T cd06562 179 NGTDYSDLESYFIQRALDIVRSLGK-TPIVWEE 210 (348)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCC-eEEEeee
Confidence 11 12334577888899998874 4455554
No 163
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.45 E-value=15 Score=36.61 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++..+.+|++.||++- .-....+.... ..+...+.|+.+++.|+++||++.+..|.
T Consensus 97 ~~~i~~a~~lG~~~v~~~~-~~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAG-YDVYYEEKSEE-TRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHHhCCCEEEECC-cccccccccHH-HHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 6788888999999999852 21111111111 12335678899999999999999998874
No 164
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.91 E-value=52 Score=35.18 Aligned_cols=149 Identities=14% Similarity=0.040 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCCEEEeCCcc------ccccCCCCCC-CC---ccchHHHHHHHHHHHHHcCCEEEEecCC----CC---
Q 046395 183 EEDFKFMSQNGLNAVRIPVGW------WIAYDPKPPK-PF---VGGSLQALDNAFRWAQKYGMKVIVDLHA----LR--- 245 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~------w~~~~p~~~~-~~---~~~~l~~ld~~i~~a~~~Gi~VIldlH~----~p--- 245 (535)
.+.++.++.+|+|+|=.-|.- -....|.... +. ....++-|..+|+.|+++||.|+-=+-- .+
T Consensus 67 ~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~ 146 (418)
T COG1649 67 KDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP 146 (418)
T ss_pred HHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCCCCh
Confidence 688899999999999765521 1111111110 11 2347889999999999999999742110 00
Q ss_pred ------C----CCCCCCCCCCCCC-CCCCC----hHHHHHHHHHHHHHHHHhCCCC----cEEE----------------
Q 046395 246 ------V----SQNGSPHSGSRDG-FQEWS----DSDIQETVAIIDFLASRYADHP----SLVA---------------- 290 (535)
Q Consensus 246 ------g----~~ng~~~sg~~~~-~~~W~----~~~~~~~~~~~~~la~ry~~~p----~V~~---------------- 290 (535)
. ...++...-+... ...|. |+.++...+.+.+++++|.=+. .+.+
T Consensus 147 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~ 226 (418)
T COG1649 147 LTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYR 226 (418)
T ss_pred hHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHH
Confidence 0 0011100000000 22332 7888888999999999986432 1111
Q ss_pred EEeecCCCCCCC-----ChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 291 IELMNEPKAPDL-----KLDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 291 ~el~NEP~~~~~-----~~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
+|..+.|..... ..+.+..+++++..+|+++.|+..+-++.
T Consensus 227 ~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 227 YETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred hhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 122222221101 11234567888899999999999887776
No 165
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=62.88 E-value=1.3e+02 Score=29.50 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=74.0
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCC---CCCccchHHHHHHHHHHHHHcCCEEE---EecC-CCCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPP---KPFVGGSLQALDNAFRWAQKYGMKVI---VDLH-ALRVSQNGSPHS 254 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~---~~~~~~~l~~ld~~i~~a~~~Gi~VI---ldlH-~~pg~~ng~~~s 254 (535)
+++-+...|++||..|-++|.= .+.. -.| .-+..-.+++.+.++|+.+= |.-| .+| .
T Consensus 20 W~erl~~AK~~GFDFvEmSvDE-----sDeRLaRLDW---s~~er~~l~~ai~etgv~ipSmClSaHRRfP--------f 83 (287)
T COG3623 20 WLERLALAKELGFDFVEMSVDE-----SDERLARLDW---SKEERLALVNAIQETGVRIPSMCLSAHRRFP--------F 83 (287)
T ss_pred HHHHHHHHHHcCCCeEEEeccc-----hHHHHHhcCC---CHHHHHHHHHHHHHhCCCccchhhhhhccCC--------C
Confidence 4899999999999999997741 1000 002 22333457889999999752 2223 122 1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHH---HHHHhCCCC-cEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDF---LASRYADHP-SLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~---la~ry~~~p-~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
|+.+ +..+++..+++++ ||+..+=.. .+.||+++=||. +...-+.|.+.+-.+++-.....+
T Consensus 84 GS~D------~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~----d~eT~~rFi~g~~~a~~lA~~aqV 149 (287)
T COG3623 84 GSKD------EATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEA----DEETRQRFIEGLKWAVELAARAQV 149 (287)
T ss_pred CCCC------HHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccC----CHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111 4677888877765 444444332 578999999998 455667777777766665554433
No 166
>PTZ00333 triosephosphate isomerase; Provisional
Probab=62.87 E-value=1.2e+02 Score=30.35 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
|--...|+++|++.|=|.=+ +. .. +-.+.-+.+.+-+..|.++||.+||++--
T Consensus 79 evS~~mL~d~G~~~viiGHS-----ER--R~-~f~Etd~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 79 EISAEMLKDLGINWTILGHS-----ER--RQ-YFGETNEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred cCCHHHHHHcCCCEEEECcc-----cc--cC-cCCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 44457889999999977322 11 11 21223477888899999999999998763
No 167
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=62.34 E-value=88 Score=27.51 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=46.2
Q ss_pred CceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeE-EEEee--CC-cEEEeecCCCeEEEeccCC
Q 046395 17 GTQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFY-NFRLS--NK-QFIGLENQGNKLVAVSATE 92 (535)
Q Consensus 17 ~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~-~~~~~--~~-~~v~~~~~~~~~~a~~~~~ 92 (535)
...|.||++..++|||-..-| .|.+... . + -|....-.+.++.| .|+.. .+ .||+++.+|-.-.+.++.|
T Consensus 43 ~g~V~ik~~~s~~YLCmn~~G--~ly~s~~-~--~-~dC~F~E~~~~n~y~~y~S~~~~~~~ylal~~~G~~r~~~~t~~ 116 (126)
T smart00442 43 VGVVAIKGVASCRYLCMNKCG--KLYGSKN-F--T-EDCVFREEMEENGYNTYASAKYRKRWYVALNKKGRPRRGQKTKP 116 (126)
T ss_pred CCEEEEEEcccceEEEECCCC--CEEEccc-C--C-CCcEEEEEeccCCeEEEEEcccCCceEEEECCCCCEeEcccCCC
Confidence 357999999999999998876 5555443 3 3 56655555665444 33432 33 7999987333355556656
Q ss_pred CC
Q 046395 93 KF 94 (535)
Q Consensus 93 ~~ 94 (535)
+.
T Consensus 117 ~~ 118 (126)
T smart00442 117 LQ 118 (126)
T ss_pred CC
Confidence 44
No 168
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=61.17 E-value=62 Score=35.88 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=75.6
Q ss_pred HhHHhhhCccchHHHHHHHHHcCCCEEE---------eCC------ccccccCCCCCCCCccchHHHHHHHHHHHHHcCC
Q 046395 171 KLMRDHWKSYITEEDFKFMSQNGLNAVR---------IPV------GWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGM 235 (535)
Q Consensus 171 ~~~~~hw~~~ite~D~~~ik~~G~N~VR---------ipv------~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi 235 (535)
..+...|.+|+..+..+.+..-|+=.+- |-. ++|.......+ .+.++++...++.|++.|.
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp----~~~lqWf~~~L~~ae~~Ge 359 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDP----IDQLQWFVDQLQEAESAGE 359 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCc----hHHhhHHHHHHHHHHhcCC
Confidence 4566789999999998888766643332 222 23333322211 1359999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEe
Q 046395 236 KVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIEL 293 (535)
Q Consensus 236 ~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el 293 (535)
+|-|=.|-.||... -...|...+.....++-+.++.+|-+|+++--+.+
T Consensus 360 kVhil~HIPpG~~~---------c~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~v 408 (577)
T KOG3770|consen 360 KVHILGHIPPGDGV---------CLEGWSINFYRIVNRFRSTIAGQFYGHTHIDEFRV 408 (577)
T ss_pred EEEEEEeeCCCCcc---------hhhhhhHHHHHHHHHHHHhhhhhccccCcceeEEE
Confidence 99999998776411 12345556777777888899999988887654443
No 169
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=60.81 E-value=1.5e+02 Score=29.79 Aligned_cols=126 Identities=16% Similarity=0.093 Sum_probs=68.1
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
.++++.++.|+++|++.|-+.+- ..++--.... ...++..-++++.++++||.|...+ ..|. +
T Consensus 120 ~~~~e~l~~Lk~aG~~~v~i~~E----~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~--i~Gl-~--------- 183 (296)
T TIGR00433 120 LLDPEQAKRLKDAGLDYYNHNLD----TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGG--IFGL-G--------- 183 (296)
T ss_pred CCCHHHHHHHHHcCCCEEEEccc----CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeE--EEeC-C---------
Confidence 56799999999999999988653 1111000011 2366777789999999999976533 2221 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC--CCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 259 GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP--DLKLDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
+..+...+.++.+.+ ++- ..|...-+.=.|..+ .........+ -+.+...|..-|...|.++.
T Consensus 184 -------et~~d~~~~~~~l~~-l~~-~~i~l~~l~p~~gT~l~~~~~~s~~~~-~~~ia~~r~~lp~~~i~~~~ 248 (296)
T TIGR00433 184 -------ETVEDRIGLALALAN-LPP-ESVPINFLVKIKGTPLADNKELSADDA-LKTIALARIIMPKAEIRLAG 248 (296)
T ss_pred -------CCHHHHHHHHHHHHh-CCC-CEEEeeeeEEcCCCccCCCCCCCHHHH-HHHHHHHHHHCCcceEEEeC
Confidence 233445555555543 221 123212222223221 1111123333 36667777777877666554
No 170
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=60.64 E-value=55 Score=29.82 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=53.6
Q ss_pred CCCceeEEEEeecCcEEEEecCCCceEEec--cCCCCCCCC-ce-eEEEEecC---CeEEEEe-eCCcEEEeecC----C
Q 046395 15 LDGTQVQLISTKLKKYLTAENGSETILMAN--HNSSSTSSW-QT-FRLWRINE---TFYNFRL-SNKQFIGLENQ----G 82 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~a~~~g~~~~~an--r~~~~~~~w-e~-f~~~~~~~---~~~~~~~-~~~~~v~~~~~----~ 82 (535)
.|| .|.+||.-+|||--.-.+++--++|. .++..+|.| .| |+..++++ .++.||. .|+.|..--.- .
T Consensus 53 ~dG-~V~Ir~~y~nKfWrr~s~n~~WI~ada~~p~ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~ 131 (153)
T PF07468_consen 53 HDG-LVHIRCCYNNKFWRRSSPNDYWIWADADDPDEDQSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFV 131 (153)
T ss_dssp TTT--EEEEETTTTEEEEESCCC--BEEEEESSHHH-TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEEE--STTBS
T ss_pred CCC-eEEEEeccCCceeEeCCCCCcEEEecCCCcccccCCCCceEEEEEEecCCCccEEEEEecCCceEEEEEccCCcce
Confidence 455 89999999999999766665566655 334333444 45 99988874 6678994 58888755422 2
Q ss_pred CeEEEeccCCCCCC--ceEEE
Q 046395 83 NKLVAVSATEKFPE--PFQIT 101 (535)
Q Consensus 83 ~~~~a~~~~~~~~e--~f~~~ 101 (535)
+-|.|-.++|..-- -|+|+
T Consensus 132 sCL~A~~~~i~~~~~~~~~~i 152 (153)
T PF07468_consen 132 SCLNAASSSIDREAKDVFTII 152 (153)
T ss_dssp SEEEEEESS--CCGTT-EEEE
T ss_pred eeEeeccCcccccccceEEEc
Confidence 33888888886533 56554
No 171
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=60.47 E-value=15 Score=41.57 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=52.9
Q ss_pred chhhhccChhhhhHhHHhhhCccchHHHHHHHHHcCCCEEEe-CCcc--------ccccCCCCCCCCcc--chHHHHHHH
Q 046395 158 YQITNGYGPDKAAKLMRDHWKSYITEEDFKFMSQNGLNAVRI-PVGW--------WIAYDPKPPKPFVG--GSLQALDNA 226 (535)
Q Consensus 158 ~~~~~~~G~~~a~~~~~~hw~~~ite~D~~~ik~~G~N~VRi-pv~~--------w~~~~p~~~~~~~~--~~l~~ld~~ 226 (535)
.|+.++|+.+.|. +-+..++++|+.++=+ ||.- +...+|. ..++ +..+.|.++
T Consensus 10 LQ~~~gFtF~~A~-------------~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t---~InPeLGG~egl~rL 73 (889)
T COG3280 10 LQFRGGFTFADAR-------------ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPT---EINPELGGEEGLERL 73 (889)
T ss_pred EeecCCCCHHHHH-------------HhhHHHHhcCchheeccchhhcCCCCCCCccCCCcc---ccChhhcChHHHHHH
Confidence 3456677776664 7788999999999876 3311 0111111 1222 478999999
Q ss_pred HHHHHHcCCEEEEec---CC-CCCCCCCCC
Q 046395 227 FRWAQKYGMKVIVDL---HA-LRVSQNGSP 252 (535)
Q Consensus 227 i~~a~~~Gi~VIldl---H~-~pg~~ng~~ 252 (535)
+..++++||.+|+|+ |- ..|..|.|+
T Consensus 74 vaalk~~GlGlI~DIVPNHMav~g~~N~ww 103 (889)
T COG3280 74 VAALKSRGLGLIVDIVPNHMAVGGHENPWW 103 (889)
T ss_pred HHHHHhcCCceEEEecccchhcccccChHH
Confidence 999999999999999 42 234566554
No 172
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=60.26 E-value=80 Score=31.42 Aligned_cols=146 Identities=10% Similarity=0.074 Sum_probs=80.6
Q ss_pred HHHHHcCCCEEEeCCcccc---ccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 046395 187 KFMSQNGLNAVRIPVGWWI---AYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEW 263 (535)
Q Consensus 187 ~~ik~~G~N~VRipv~~w~---~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W 263 (535)
+.+++.|+...-+..+-+. +..+++. ..+..++.+.++++.|++.|..+|+ ++... . ..+ ..
T Consensus 59 ~~l~~~gl~i~~~~~~~~~~~~l~~~~~~--~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~---~---~~~---~~--- 123 (279)
T TIGR00542 59 NAIIETGVRIPSMCLSAHRRFPLGSKDKA--VRQQGLEIMEKAIQLARDLGIRTIQ-LAGYD---V---YYE---EH--- 123 (279)
T ss_pred HHHHHcCCCceeeecCCCccCcCCCcCHH--HHHHHHHHHHHHHHHHHHhCCCEEE-ecCcc---c---ccC---cC---
Confidence 3567889887766443211 1111111 2234688999999999999999875 44210 0 000 00
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcE-EEEcC--C--CCCChh
Q 046395 264 SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAY-VILSN--R--LGGEWS 338 (535)
Q Consensus 264 ~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~-ii~~~--~--~g~~~~ 338 (535)
..+..+.+++.++.+++.-+.+.-.+++|.++.|.. .+. .++.+.+++++..++ +.+.. . ++.+..
T Consensus 124 ~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~--~t~-------~~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~ 194 (279)
T TIGR00542 124 DEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFM--SSI-------SKWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQ 194 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchh--cCH-------HHHHHHHHHcCCCceEEEeCcChhhhccCCHH
Confidence 135677888888888887777777788997655432 122 234455666664443 44421 1 223332
Q ss_pred hhhcccCCCCcEEEEEeecCc
Q 046395 339 ELLSFASNLSRVVIDVHFYNL 359 (535)
Q Consensus 339 ~~~~~~~~~~n~v~d~H~Y~~ 359 (535)
..... ...-+.-+|.-..
T Consensus 195 ~~i~~---~~~~i~~vHikD~ 212 (279)
T TIGR00542 195 MELQL---GIDKIVAIHLKDT 212 (279)
T ss_pred HHHHH---hhhhEEEEEeCCC
Confidence 22221 1234667787654
No 173
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=58.27 E-value=44 Score=36.36 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=41.8
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecC-CCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLH-ALR 245 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH-~~p 245 (535)
++++.++.|+++|++.|-+++-. ..+..- ..+. ....+.+.++++.|+++||.+.+++- +.|
T Consensus 285 ~~~e~l~~l~~aG~~~v~iGiES--~s~~~L-~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlP 348 (472)
T TIGR03471 285 VDYETLKVMKENGLRLLLVGYES--GDQQIL-KNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLP 348 (472)
T ss_pred CCHHHHHHHHHcCCCEEEEcCCC--CCHHHH-HHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCC
Confidence 67899999999999988776632 111000 0011 11467788899999999999988764 444
No 174
>PRK14567 triosephosphate isomerase; Provisional
Probab=57.34 E-value=2e+02 Score=28.69 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
|=-...||++|++.|=|.=+ +. .. +-.+.-+.+.+-+..|.++||.+|+++-
T Consensus 75 EvS~~mLkd~G~~yviiGHS-----ER--R~-~f~Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 75 EISARMLEDIGCDYLLIGHS-----ER--RS-LFAESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred cCCHHHHHHcCCCEEEECcc-----cc--cC-ccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34456789999999977322 11 11 2223345667778899999999999876
No 175
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=57.23 E-value=1.3e+02 Score=30.93 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=86.6
Q ss_pred hhhCccchHHHHHHHHHcCC-CEEEeCCcccc-c-------------cC---CCCC----CCC--ccchHHHHHHHHHH-
Q 046395 175 DHWKSYITEEDFKFMSQNGL-NAVRIPVGWWI-A-------------YD---PKPP----KPF--VGGSLQALDNAFRW- 229 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~-N~VRipv~~w~-~-------------~~---p~~~----~~~--~~~~l~~ld~~i~~- 229 (535)
++|+.++ ++-++.|++.|+ +.|=+|+.-+- . .. ..+. .+| .+.+++.+-+.|..
T Consensus 98 ry~~P~i-~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~ 176 (320)
T COG0276 98 RYGPPFI-EEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREK 176 (320)
T ss_pred cCCCCcH-HHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHH
Confidence 5676665 799999999999 56666764321 0 00 0000 011 23456666555544
Q ss_pred HHHc---CCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC--CCCcEEEEEeecCCCCCCCCh
Q 046395 230 AQKY---GMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYA--DHPSLVAIELMNEPKAPDLKL 304 (535)
Q Consensus 230 a~~~---Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~--~~p~V~~~el~NEP~~~~~~~ 304 (535)
++++ +..+|+..|+.|-+.... | +.|.++..+..+-|+++.+ .....++|+--.=|.
T Consensus 177 ~~~~~~~~~~llfSaHglP~~~~~~-------G-----DpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~------ 238 (320)
T COG0276 177 LAKHPRDDDVLLFSAHGLPKRYIDE-------G-----DPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPE------ 238 (320)
T ss_pred HHhcCCCCeEEEEecCCCchhhhhc-------C-----CchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCC------
Confidence 4454 588999999887533211 1 2477788888888888877 566788898733332
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 046395 305 DSLKTYYKAGYDTVRKYSSSAYVILSNRLG 334 (535)
Q Consensus 305 ~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g 334 (535)
.-+..+.++.++.+.+.+.++++++.-++-
T Consensus 239 ~WL~P~t~~~l~~L~~~g~k~iiv~pigFv 268 (320)
T COG0276 239 PWLQPYTDDLLEELGEKGVKKIIVVPIGFV 268 (320)
T ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECCchh
Confidence 224455666666666667777888766553
No 176
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=56.91 E-value=1.2e+02 Score=29.84 Aligned_cols=121 Identities=6% Similarity=-0.044 Sum_probs=68.9
Q ss_pred HHHHcCCCEEEeCCc---c-ccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 046395 188 FMSQNGLNAVRIPVG---W-WIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEW 263 (535)
Q Consensus 188 ~ik~~G~N~VRipv~---~-w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W 263 (535)
.+++.|+..+-+... + +....+. .......++.++++|+.|++.|...|+-....++ . ..-
T Consensus 55 ~~~~~gl~v~s~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~----~---------~~~ 119 (275)
T PRK09856 55 LAQTYQMPIIGYTPETNGYPYNMMLGD--EHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAG----Y---------LTP 119 (275)
T ss_pred HHHHcCCeEEEecCcccCcCccccCCC--HHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCC----C---------CCC
Confidence 455899987655321 1 0111111 1122347889999999999999999864322111 0 000
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC-CCcEEEE
Q 046395 264 SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYS-SSAYVIL 329 (535)
Q Consensus 264 ~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~-p~~~ii~ 329 (535)
..+..+.+.+.++.|++.-+.+.-.+++|.++.+.. ....-..++...+++++ |+..+.+
T Consensus 120 ~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~------~~~~t~~~~~~l~~~~~~~~v~~~~ 180 (275)
T PRK09856 120 PNVIWGRLAENLSELCEYAENIGMDLILEPLTPYES------NVVCNANDVLHALALVPSPRLFSMV 180 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcc------cccCCHHHHHHHHHHcCCCcceeEE
Confidence 135667778888888776666556677876542211 11122566777788887 4444444
No 177
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=56.40 E-value=17 Score=32.08 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=43.2
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCC-CCCCC-ccchHHHHHHHHHHHHHcCCE-EEEecCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPK-PPKPF-VGGSLQALDNAFRWAQKYGMK-VIVDLHALRV 246 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~-~~~~~-~~~~l~~ld~~i~~a~~~Gi~-VIldlH~~pg 246 (535)
.++.++.|++.|++.|++.+..- .+. -...+ ....++.+-+.++.+.++|+. ++.-+...||
T Consensus 89 ~~~~l~~l~~~~~~~i~~~l~s~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 89 DEELLDELKKLGVDRIRISLESL---DEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp CHHHHHHHHHTTCSEEEEEEBSS---SHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred hHHHHHHHHhcCccEEecccccC---CHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 38999999999999999987531 111 00001 123788889999999999998 5655555543
No 178
>PRK07094 biotin synthase; Provisional
Probab=56.01 E-value=57 Score=33.36 Aligned_cols=128 Identities=16% Similarity=0.087 Sum_probs=68.6
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCCCCCCCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLH-ALRVSQNGSPHSGSRD 258 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH-~~pg~~ng~~~sg~~~ 258 (535)
.+++.++.|+++|++.|-+.+-- . ++.--..+. ...++..-+.++.++++||.|..++- +.||
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs--~-~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg------------ 191 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHET--A-DKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPG------------ 191 (323)
T ss_pred CCHHHHHHHHHcCCCEEEecccc--C-CHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCC------------
Confidence 56899999999999988765521 1 110000000 12567788899999999998655443 2222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC--CChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 259 GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPD--LKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~--~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
+..+...+.++.+.+ ++- ..+....+.-.|..+- ..... ..-+.++++..|-.-|+..|-..+.|
T Consensus 192 -------et~ed~~~~l~~l~~-l~~-~~v~~~~~~P~pgTpl~~~~~~~-~~~~~~~~a~~R~~lp~~~i~~~~~~ 258 (323)
T PRK07094 192 -------QTLEDLADDILFLKE-LDL-DMIGIGPFIPHPDTPLKDEKGGS-LELTLKVLALLRLLLPDANIPATTAL 258 (323)
T ss_pred -------CCHHHHHHHHHHHHh-CCC-CeeeeeccccCCCCCcccCCCCC-HHHHHHHHHHHHHhCcCCCCcccCCc
Confidence 234555555555554 322 1233233444454321 11111 12236777788888887554333333
No 179
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=55.80 E-value=34 Score=33.27 Aligned_cols=119 Identities=21% Similarity=0.223 Sum_probs=69.4
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHH----HHHcCCEEEEecCCCCCCCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRW----AQKYGMKVIVDLHALRVSQNGSPHSGSR 257 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~----a~~~Gi~VIldlH~~pg~~ng~~~sg~~ 257 (535)
+.+|+..|+-.|+..|=.+-+ +|.|.. ..+..++.+++++.+ |.+.||++-+.+--.|.+-
T Consensus 13 ~~eDlekMa~sGI~~Vit~Ah-----dP~~~~-~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~i--------- 77 (254)
T COG1099 13 GFEDLEKMALSGIREVITLAH-----DPYPMK-TAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAI--------- 77 (254)
T ss_pred cHHHHHHHHHhChhhhhhccc-----CCCCcc-cHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCC---------
Confidence 469999999999998866443 343332 344567788887765 8899988766654333211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 046395 258 DGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNR 332 (535)
Q Consensus 258 ~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~ 332 (535)
.......+..|-+-+. +..|+|+. |......+.+ =+++...-....|..+ .+++++..
T Consensus 78 ----------P~e~~~~l~~L~~~l~-~e~VvAiG---EiGLe~~t~~-E~evf~~QL~LA~e~d--vPviVHTP 135 (254)
T COG1099 78 ----------PPELEEVLEELEELLS-NEDVVAIG---EIGLEEATDE-EKEVFREQLELARELD--VPVIVHTP 135 (254)
T ss_pred ----------CchHHHHHHHHHhhcc-cCCeeEee---ecccccCCHH-HHHHHHHHHHHHHHcC--CcEEEeCC
Confidence 1124555666666666 45565543 3332222222 3455555555666654 45666643
No 180
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=55.26 E-value=63 Score=32.44 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=39.8
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+.++|++...+.|+..||+-++. ..++.+...++.|+++|++|.+.+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDAL--------------NDVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecC--------------ChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 56899999999999999994422 1368899999999999999987664
No 181
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=55.17 E-value=21 Score=39.69 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEeCCcccccc-----CCCCCCCCcc--chHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAY-----DPKPPKPFVG--GSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~-----~p~~~~~~~~--~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.+-++.|+++|++++=++=..-... .+......++ +.++.+.++|+++.+.||++|+|+-
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 4778899999999998843221110 0001011111 4688999999999999999999994
No 182
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=55.06 E-value=47 Score=35.57 Aligned_cols=60 Identities=23% Similarity=0.447 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEe-CCcc-------ccc-----cCCCCCCCCccchHHHHHHHHHHH-HHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGW-------WIA-----YDPKPPKPFVGGSLQALDNAFRWA-QKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~-------w~~-----~~p~~~~~~~~~~l~~ld~~i~~a-~~~Gi~VIldlH 242 (535)
++-|+.+++.|.|.|-+ |+.- .+. ++|.-..+-.+..++.+.++|..+ +++||.+|.|+.
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 79999999999999987 3311 011 111100000113578899999887 579999999995
No 183
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=55.05 E-value=1.4e+02 Score=30.40 Aligned_cols=95 Identities=11% Similarity=0.108 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 220 LQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 220 l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
...+.+-|+.|++.|++|+|.+.+..++. ..-.++.++.+++.+..+.+.|. +-|+++-=|...
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~~------------~~~~~~~~~~fa~sl~~~~~~~g----~DGiDiD~E~~~ 122 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGHV------------DLNHTAQEDNFVDSIVAIIKEYG----FDGLDIDLESGS 122 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCcc------------ccCCHHHHHHHHHHHHHHHHHhC----CCeEEEecccCC
Confidence 35677788899999999999986432110 01114567777777777777673 557777777643
Q ss_pred CCCChHHHHHHHHHHHHHHHhcC-CCcEEEEc
Q 046395 300 PDLKLDSLKTYYKAGYDTVRKYS-SSAYVILS 330 (535)
Q Consensus 300 ~~~~~~~~~~~~~~~~~aIR~~~-p~~~ii~~ 330 (535)
.......-+.-+.++++.+|+.- ++.++.+.
T Consensus 123 ~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~A 154 (312)
T cd02871 123 NPLNATPVITNLISALKQLKDHYGPNFILTMA 154 (312)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 21111122333344445555443 33344443
No 184
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=54.34 E-value=40 Score=35.10 Aligned_cols=96 Identities=13% Similarity=-0.002 Sum_probs=59.2
Q ss_pred HHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChH
Q 046395 226 AFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLD 305 (535)
Q Consensus 226 ~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~ 305 (535)
.++.|+++|++|+-.++..+.+...+.+.- .... ++....+++-+..|++.|+=+.-.+ .+-|.+. .....+
T Consensus 51 ~idaAHknGV~Vlgti~~e~~~~~~~~~~l-L~~~----~~~~~~~a~kLv~lak~yGfDGw~i--N~E~~~~-~~~~~~ 122 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWTGQVEWLEDF-LKKD----EDGSFPVADKLVEVAKYYGFDGWLI--NIETELG-DAEKAK 122 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCCCchHHHHHH-hccC----cccchHHHHHHHHHHHHhCCCceEe--eeeccCC-cHHHHH
Confidence 579999999999988864321110000000 0000 1344566777778888776544333 3333331 123568
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEE
Q 046395 306 SLKTYYKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 306 ~~~~~~~~~~~aIR~~~p~~~ii~ 329 (535)
.+..|++.+.+..++..|...|++
T Consensus 123 ~l~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 123 RLIAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEE
Confidence 899999999999999999888776
No 185
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=53.85 E-value=35 Score=38.52 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=68.8
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCcc-ccccCCCCCCC---CccchHHHHHHHHHHHH--HcCCEEEEecCCCC--C----
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGW-WIAYDPKPPKP---FVGGSLQALDNAFRWAQ--KYGMKVIVDLHALR--V---- 246 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~-w~~~~p~~~~~---~~~~~l~~ld~~i~~a~--~~Gi~VIldlH~~p--g---- 246 (535)
+|-.|+|+... +.||.-.-||... |.-++-..+.. |+...+..=..+++.++ .+.|-+|||-|--. +
T Consensus 367 NY~DE~DV~~V-d~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~IvDPHIKkD~~Y~v~ 445 (915)
T KOG1066|consen 367 NYNDEEDVLTV-DQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIVDPHIKKDDGYFVH 445 (915)
T ss_pred cccchhhhhhh-hcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEeCcccccCCCeEEh
Confidence 46566666554 6789999999874 55555555543 34334444455555544 45677899999431 1
Q ss_pred ----------------CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEeecCCCC
Q 046395 247 ----------------SQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYAD-HPSLVAIELMNEPKA 299 (535)
Q Consensus 247 ----------------~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~-~p~V~~~el~NEP~~ 299 (535)
...|+-++|...-..+|+|+.++.+..... ..+|.. .+++..|.=||||..
T Consensus 446 ke~~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fa--fd~y~g~t~nl~iWNDMNEPSV 513 (915)
T KOG1066|consen 446 KEAKDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFA--FDRYEGSTPNLFIWNDMNEPSV 513 (915)
T ss_pred HHhhhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcc--cccccCCCCceEEeccCCCccc
Confidence 112333344332233344555555544444 345654 467999999999986
No 186
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=53.25 E-value=8.2 Score=35.18 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=27.0
Q ss_pred CcccHHHHHhhCCCCCC--CCceEEEecCCccCCccccC
Q 046395 491 TVMHVNQIRGILPSRVR--SKREDGIKNLKEFGDDYYRP 527 (535)
Q Consensus 491 ~~~~~~~i~~~lphr~p--~~~~~~~k~v~~~~~~~f~~ 527 (535)
+.+-+++|.++-|...+ -.+++|.|+|+ .||+||+|
T Consensus 7 p~lliDrV~~~~~~~G~~~~g~i~a~k~v~-~~e~ff~g 44 (150)
T cd01287 7 QLLMLDRVTEIDPGGGTFGLGYLRAEKDID-PDDWFFPC 44 (150)
T ss_pred cEEEEEEEEEEecCCCcccccEEEEEEEcC-CCCceEcC
Confidence 34455667777775555 35799999999 99999985
No 187
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=52.21 E-value=18 Score=36.10 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=43.8
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
...+|++...+.|+..||+.++-... ....-+. -.+..++.+.++++.|+++|++|.+.+-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~-~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 72 CHMDDARIAVETGVDGVDLVFGTSPFLREASHGK-SITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 35789999999999999997643110 0111111 12346888999999999999999887753
No 188
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=51.52 E-value=1.9e+02 Score=29.34 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHHHHHcC--CCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNG--LNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G--~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
++.++.+++.| +.++=|-++|.....- ..-.+++..+...+.+++.+++.|+++++-+|
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~w~~~~~~-~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 27 NEFADGMRERNLPCDVIHLDCFWMKEFQW-CDFEFDPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccCCcc-eeeEECcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 46667778888 5556666666421110 01124555667789999999999999999887
No 189
>PRK04302 triosephosphate isomerase; Provisional
Probab=51.18 E-value=2.3e+02 Score=27.24 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
+.-++.+++.|++.|=+|-.- ... .+..+.+.++.|.++||.+|++.|..
T Consensus 75 ~~~~~~l~~~G~~~vii~~se-------r~~-----~~~e~~~~v~~a~~~Gl~~I~~v~~~------------------ 124 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSE-------RRL-----TLADIEAVVERAKKLGLESVVCVNNP------------------ 124 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccc-------ccc-----CHHHHHHHHHHHHHCCCeEEEEcCCH------------------
Confidence 445888999999999775321 001 23458889999999999999988841
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC-hHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLK-LDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~-~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
++. +.+. ...+.+++|+-..= .+.+.. ........++.++.||+...+..|+.+++.
T Consensus 125 ------~~~----~~~~---~~~~~~I~~~p~~~-igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI 182 (223)
T PRK04302 125 ------ETS----AAAA---ALGPDYVAVEPPEL-IGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGI 182 (223)
T ss_pred ------HHH----HHHh---cCCCCEEEEeCccc-cccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 111 1111 12345666653211 111111 001223467778888987667777877655
No 190
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.65 E-value=1.8e+02 Score=28.72 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=56.7
Q ss_pred HHHHHHcCCCEEEeCCcc-c--cccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 186 FKFMSQNGLNAVRIPVGW-W--IAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 186 ~~~ik~~G~N~VRipv~~-w--~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
-+.+++.|+...-+.++. + .+..+++ ...+..++.+.++|+.|++.|..+|. ++.... ... .
T Consensus 58 ~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~--~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~~----~~~--------~ 122 (284)
T PRK13210 58 VKAIYETGVRIPSMCLSGHRRFPFGSRDP--ATRERALEIMKKAIRLAQDLGIRTIQ-LAGYDV----YYE--------E 122 (284)
T ss_pred HHHHHHcCCCceEEecccccCcCCCCCCH--HHHHHHHHHHHHHHHHHHHhCCCEEE-ECCccc----ccc--------c
Confidence 335678898876553221 0 1111111 11234788999999999999999986 332110 000 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMN 295 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N 295 (535)
-.++..+.+++.++.+++.-+.+.-.+++|.+.
T Consensus 123 ~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 123 KSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 013566788888888888777766667777653
No 191
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=50.58 E-value=46 Score=40.81 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEe-CCccccccCCCCCCCC--------c------cchHHHHHHHHHHHHHc-CCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRI-PVGWWIAYDPKPPKPF--------V------GGSLQALDNAFRWAQKY-GMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRi-pv~~w~~~~p~~~~~~--------~------~~~l~~ld~~i~~a~~~-Gi~VIldl 241 (535)
++.|+.|+++|+|+|=+ |+.- ... .+.+| + ++..+.+.++|+.|.+. ||++|+|+
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~--~G~--SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQE--LGG--SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCcc--CCC--CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 89999999999999987 4421 000 11122 1 13567899999999995 99999999
No 192
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=50.44 E-value=64 Score=32.84 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC
Q 046395 224 DNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLK 303 (535)
Q Consensus 224 d~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~ 303 (535)
.++++.|+++|++|++-+....++ ++... ......=.++.++.+++-+..++++|+=+.-.+-| |+.. ..+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~--~~~~~--~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDw----E~~~-~~d 118 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNG--NFDSE--LAHAVLSNPEARQRLINNILALAKKYGYDGVNIDF----ENVP-PED 118 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCC--CCCHH--HHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEec----ccCC-HHH
Confidence 578999999999999988753210 01000 00000001466777887777778777543323333 4332 234
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 046395 304 LDSLKTYYKAGYDTVRKYS 322 (535)
Q Consensus 304 ~~~~~~~~~~~~~aIR~~~ 322 (535)
...+..+++++..++++.+
T Consensus 119 ~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 119 REAYTQFLRELSDRLHPAG 137 (313)
T ss_pred HHHHHHHHHHHHHHhhhcC
Confidence 5678888888888887654
No 193
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=50.37 E-value=33 Score=33.79 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++..+++|...|+++.++.. .............+.|.++.+.|+++|+.+.+..|+
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP--AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 67888899999999999776421 000001111234577788889999999999998764
No 194
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.07 E-value=38 Score=33.61 Aligned_cols=59 Identities=24% Similarity=0.129 Sum_probs=40.9
Q ss_pred hHHHHHHHHHcCCCEEEeCCcccccc-CCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAY-DPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~-~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+++++...+.|+..||+.++..... ...-+. -.+..++.+.++++.|+++|++|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~-~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGK-DRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999976432110 000000 123467888999999999999987644
No 195
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=48.96 E-value=1.5e+02 Score=30.54 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=66.3
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
...+++-++.|.++|+.-||+-.. .+.+.....+-+.|..|.++||-|=+.+.+.||
T Consensus 120 ~~~~~e~l~~L~eAGLDEIRfHp~-----------~~~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg------------ 176 (353)
T COG2108 120 ILATEEALKALAEAGLDEIRFHPP-----------RPGSKSSEKYIENLKIAKKYGMDVGVEIPAIPG------------ 176 (353)
T ss_pred ccCCHHHHHHHHhCCCCeEEecCC-----------CccccccHHHHHHHHHHHHhCccceeecCCCcc------------
Confidence 367899999999999999999332 123345667777888999999999999998875
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 046395 259 GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVR 319 (535)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR 319 (535)
..+++..+.+.+ ..++- -|-=+||-.. +...+..++.+.+...+
T Consensus 177 --------~e~~i~e~~~~~-~~~~~-----~FlNiNELE~---sE~N~~~l~~~gy~~~~ 220 (353)
T COG2108 177 --------EEEAILEFAKAL-DENGL-----DFLNINELEF---SENNYENLLERGYKISD 220 (353)
T ss_pred --------hHHHHHHHHHHH-Hhccc-----ceeeeeeeee---ccchHHHHHhcCceecc
Confidence 223333333333 33431 2455688764 34456666666555433
No 196
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.86 E-value=28 Score=35.77 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=48.4
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALR 245 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~p 245 (535)
+..-..+.||++|.+.|.+-+-| +|+.....+....+++.++.+.|++.||--+|.+-.+|
T Consensus 108 l~~ws~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd 168 (329)
T PRK04161 108 LVEWSVKRLKEAGADAVKFLLYY----DVDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYD 168 (329)
T ss_pred cchhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 33567889999999999997754 44433335556789999999999999999999998765
No 197
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=47.96 E-value=2.4e+02 Score=26.46 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=67.4
Q ss_pred hhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCC
Q 046395 176 HWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSG 255 (535)
Q Consensus 176 hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg 255 (535)
+|...|+..|++.+|+.|+..+=|=+. +|..|.. ..+..=++.|++.||.|=+-....+.+
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikat--------eG~~~~D---~~~~~n~~~A~~aGl~vG~Yhf~~~~~-------- 68 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLT--------EGTTYRN---PYAASQIANAKAAGLKVSAYHYAHYTS-------- 68 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEc--------CCCCccC---hHHHHHHHHHHHCCCeeEEEEEEecCC--------
Confidence 455556678999999999985433111 2221211 345677899999999764422221100
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCC-CcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 256 SRDGFQEWSDSDIQETVAIIDFLASRYADH-PSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 256 ~~~~~~~W~~~~~~~~~~~~~~la~ry~~~-p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
..+.++++..+++.+.. ++-. +.++.+++-.-+. ...+..+..+.++.|++..-..+++.+
T Consensus 69 --------~~~a~~eA~~f~~~~~~-~~~~~~~~~~lD~E~~~~-----~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 69 --------AADAQAEARYFANTAKS-LGLSKNTVMVADMEDSSS-----SGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred --------hHHHHHHHHHHHHHHHH-cCCCCCCceEEEeecCCC-----cchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 02455666666666633 3222 2333344432221 245667777778888887654444443
No 198
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=47.89 E-value=69 Score=32.03 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=40.4
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
...+|++...+.|+..||+.+.. ..++.+.++++.|+++|+.|.+.+-.
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 34688999999999999996522 25788999999999999999987764
No 199
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=47.18 E-value=34 Score=33.55 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCC--CCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPP--KPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~--~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++.++++|...||+..+.. +... +...+...+.|.++.+.|+++||.+.+..|.
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKR----PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5778889999999999976542 1110 1111234567889999999999999998774
No 200
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=46.96 E-value=2.2e+02 Score=27.90 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC
Q 046395 221 QALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP 300 (535)
Q Consensus 221 ~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~ 300 (535)
..+..+++.|+++|++|++-+.+...+. + ....=.++.++.+++-+..+.++|+=+.-.+-||- |..
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~--~-------~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~---~~~- 112 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPE--F-------TAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEG---PDV- 112 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCc--c-------hhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeec---cCc-
Confidence 5677889999999999999886421100 0 00001156777777766667777753332333432 221
Q ss_pred CCChHHHHHHHHHHHHHHHhc
Q 046395 301 DLKLDSLKTYYKAGYDTVRKY 321 (535)
Q Consensus 301 ~~~~~~~~~~~~~~~~aIR~~ 321 (535)
..+.+..+++++.+++++.
T Consensus 113 --~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 113 --TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred --cHhHHHHHHHHHHHHHhhc
Confidence 1456777888888877764
No 201
>PRK12465 xylose isomerase; Provisional
Probab=46.36 E-value=3.4e+02 Score=29.05 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=67.3
Q ss_pred EEEeCCccccccCCCCC---------CCCcc------chHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC
Q 046395 196 AVRIPVGWWIAYDPKPP---------KPFVG------GSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF 260 (535)
Q Consensus 196 ~VRipv~~w~~~~p~~~---------~~~~~------~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~ 260 (535)
++|+.|.||+.+..... .||+. ....++|.+++...+.|+.- +++|-.--. ..+.
T Consensus 49 hlrFav~yWHtf~~~G~DpFG~~T~~rpw~~~~~~~~~Ak~k~daaFEf~~kLG~~~-~~FHD~D~~---------Peg~ 118 (445)
T PRK12465 49 HLRFAVAYWHSFCGNGADPFGPGTRAYPWDVGNTALARAEAKSDAAFEFFTKLGVPY-YCFHDIDLA---------PDAD 118 (445)
T ss_pred hhceeeeeeecCCCCCCCCCCCccCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCe-eeccccccC---------CCCC
Confidence 37899999876432211 23432 24688999999999999865 467742100 0010
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec---CCCCC----CCChHHHHHH----HHHHHHHHHhcCCCcEEEE
Q 046395 261 QEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN---EPKAP----DLKLDSLKTY----YKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 261 ~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N---EP~~~----~~~~~~~~~~----~~~~~~aIR~~~p~~~ii~ 329 (535)
.. .+......++++.+.+.-+...-.+-|.+-| .|.-- ..+-..++.+ .++++++.|+++.+.+|++
T Consensus 119 s~--~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~GA~TnPD~~Vra~A~~qvk~alD~~~eLGgenyV~W 196 (445)
T PRK12465 119 DI--GEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMNGASTNPDFNVVARAAVQVKAAIDATVELGGENYVFW 196 (445)
T ss_pred CH--HHHHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 00 1222223333333333333333334355444 33321 1222334443 4566778899999999999
Q ss_pred cCC
Q 046395 330 SNR 332 (535)
Q Consensus 330 ~~~ 332 (535)
+++
T Consensus 197 GGR 199 (445)
T PRK12465 197 GGR 199 (445)
T ss_pred CCc
Confidence 874
No 202
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=46.31 E-value=3.2e+02 Score=28.02 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=39.1
Q ss_pred hhHHHHHHhhcCCCcEE--EeccCCCc---CCCC-CCHHHHHHHHHHHHHHHhh-CCcceEEEeeeeCC
Q 046395 380 RSSDLRNVTTSDGPLSF--VGEWSCEW---EAEG-ASKRDYQRFAEAQLDVYGR-ATFGWAYWAYKFAE 441 (535)
Q Consensus 380 ~~~~l~~~~~~~~p~v~--vGEfg~~~---~~~~-~~~~~~~~~~~~ql~~~~~-~~~Gw~~W~~k~~~ 441 (535)
++..++.+...+.|.+| .-|..+.| +..+ .+.+.|.+..+...+.+.. +++.-+.|+|.+..
T Consensus 139 iA~~l~~l~~~~vPVl~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~~Nliwvw~~~~ 207 (311)
T PF02156_consen 139 IADFLKQLKDAGVPVLFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGLHNLIWVWSPNG 207 (311)
T ss_dssp HHHHHHHHHCTTS-EEEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST-TSEEEEE-EBT
T ss_pred HHHHHHHhhcCCCeEEEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCCceEEEEecCCC
Confidence 34445666655556332 57776654 3221 2378888888888898864 67888999999875
No 203
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=45.90 E-value=27 Score=35.82 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALR 245 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~p 245 (535)
.-..+.||++|.+.|.+-+-| .|+.....+....+++.++.+.|+++||--+|.+-.++
T Consensus 109 ~~s~~rike~GadavK~Llyy----~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd 167 (325)
T TIGR01232 109 EWSAKRLKEQGANAVKFLLYY----DVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYD 167 (325)
T ss_pred cccHHHHHHhCCCeEEEEEEe----CCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 456889999999999997754 44433224555789999999999999999999988764
No 204
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=45.84 E-value=29 Score=34.59 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
++-++.++++|++.|++..+.... .+.........+.+.++++.|+++||++.|..|..+.. . .
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~-----~------~-- 151 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGN-----E------I-- 151 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC-----C------C--
Confidence 688888999999999996654211 00011112356788889999999999999988853310 0 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcE-EEEEeecCCCCCC--CChHHHHHHHHHHHHHH
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSL-VAIELMNEPKAPD--LKLDSLKTYYKAGYDTV 318 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V-~~~el~NEP~~~~--~~~~~~~~~~~~~~~aI 318 (535)
....+.+.++++.+- .+|++ +-+++.|=-.... .+.+.+..++.+....|
T Consensus 152 --~~t~~~~~~li~~v~----~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i 204 (279)
T cd00019 152 --GSSFEELKEIIDLIK----EKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVI 204 (279)
T ss_pred --CCCHHHHHHHHHhcC----CCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHh
Confidence 023345555555542 24544 4578777322110 11234555555544443
No 205
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=45.56 E-value=76 Score=37.11 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEecC-CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec
Q 046395 217 GGSLQALDNAFRWAQKYGMKVIVDLH-ALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN 295 (535)
Q Consensus 217 ~~~l~~ld~~i~~a~~~Gi~VIldlH-~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N 295 (535)
...+..|..+|+.+++.||+||--+. .-|+..+--. .| +.|.. .......++.++.|.+.|.+ |.|++
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~-fg-~~g~~---rs~a~~~~~~~~~~~~~y~~------f~~~d 872 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGS-FG-RYGPR---RSIAKKIIDSFKKMEKTYPH------FILFD 872 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCCCCCccccCc-cc-ccCcc---hhhHHHHHHHHHHHHhhCCc------eEEEe
Confidence 45689999999999999999997665 4455332100 01 11110 12333444555555555544 45888
Q ss_pred CCCC
Q 046395 296 EPKA 299 (535)
Q Consensus 296 EP~~ 299 (535)
|-..
T Consensus 873 enk~ 876 (912)
T TIGR02171 873 ENKD 876 (912)
T ss_pred cCcC
Confidence 8654
No 206
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=45.55 E-value=3e+02 Score=26.89 Aligned_cols=124 Identities=20% Similarity=0.208 Sum_probs=71.3
Q ss_pred HHHHH-HHHHcCCCEEE--eCCccccccC----CCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCC
Q 046395 183 EEDFK-FMSQNGLNAVR--IPVGWWIAYD----PKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSG 255 (535)
Q Consensus 183 e~D~~-~ik~~G~N~VR--ipv~~w~~~~----p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg 255 (535)
.++++ .+++.|+...= +|++.|.... ..++ -.+...+.++++|+.|++.|..+|...- |..
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~a~~lga~~i~~~~---g~~------- 109 (258)
T PRK09997 42 IEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPG--REEEFRDGVAAAIRYARALGNKKINCLV---GKT------- 109 (258)
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCC--cHHHHHHHHHHHHHHHHHhCCCEEEECC---CCC-------
Confidence 34444 55688988642 4554432110 0111 1223467899999999999999775321 110
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcE
Q 046395 256 SRDGFQEWS-DSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAY 326 (535)
Q Consensus 256 ~~~~~~~W~-~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ 326 (535)
...+. .+..+.+.+.++.+++..+++.-.+++|..|.+..+.. +-.-..++.+.++++++..+
T Consensus 110 ----~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~----~~~~~~~~~~ll~~v~~~~v 173 (258)
T PRK09997 110 ----PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGF----HLTGTRQALKLIDDVGCCNL 173 (258)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCC----ccCCHHHHHHHHHHhCCCCE
Confidence 00111 34567778888888887777777788998886431111 11223455567777775544
No 207
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.29 E-value=34 Score=35.11 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=47.8
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALR 245 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~p 245 (535)
..-..+.||++|.+.|.+-+-| +|+.+...+....+++.++.+.|++.||--+|.+-.++
T Consensus 107 ~~wS~~rike~GadavK~Llyy----~pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~ 166 (324)
T PRK12399 107 DDWSAKRIKEEGADAVKFLLYY----DVDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYD 166 (324)
T ss_pred chhhHHHHHHhCCCeEEEEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeecc
Confidence 3556788999999999997754 44433335556789999999999999999999988765
No 208
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.03 E-value=39 Score=33.51 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++..+.+|+..|+++.+.-. ..... ....+...+.|+++.+.|+++||++.+..|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~-~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAG-YLTPP-NVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCC-CCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 67888899999999999543210 01100 1112346778899999999999999998764
No 209
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=44.55 E-value=47 Score=34.89 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=42.3
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.++|++.+.+.|+..||+.++.... ....-+. -.+..++.+.++++.|+++|++|.+.+-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~-~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKK-SRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4899999999999999996653211 0000011 1234688899999999999999987664
No 210
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.29 E-value=50 Score=34.46 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+++|++...+.|+..|++.++--.. ...+-+. -.++.++.+.++|+.|+++|++|.+.+-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~-t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINC-SIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 6899999999999999997653111 1111111 1345788999999999999999976553
No 211
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=44.26 E-value=38 Score=34.06 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHAL 244 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~ 244 (535)
++-|++++++|+.-|-+-+. +. -.+...+.++++++.|++|.|. ||+|.+
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~-----~~-----d~Q~~v~~y~~i~~~AA~~~Lm--vnfHg~ 158 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM-----DR-----DDQEMVNWYEDILEDAAEYKLM--VNFHGA 158 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------SS-----TSHHHHHHHHHHHHHHHHTT-E--EEETTS
T ss_pred HHHHHHHHHcCCCEEeeCcC-----CC-----CCHHHHHHHHHHHHHHHHcCcE--EEecCC
Confidence 89999999999999999542 21 2345799999999999999875 577964
No 212
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=43.46 E-value=48 Score=35.08 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=42.6
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+||...+.+.-++...+.|+.++|| + ..+ +...-|...++.++++|..+...+-
T Consensus 93 rhyaDDvVe~Fv~ka~~nGidvfRi---F-DAl----------ND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 93 RHYADDVVEKFVEKAAENGIDVFRI---F-DAL----------NDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred cCCchHHHHHHHHHHHhcCCcEEEe---c-hhc----------cchhHHHHHHHHHHhcCceeEEEEE
Confidence 6888888888889999999999999 1 111 2446788899999999998876553
No 213
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.44 E-value=2.7e+02 Score=27.60 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=67.8
Q ss_pred HHHHHHcCCCEEEeCCccccccCCC-CCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 046395 186 FKFMSQNGLNAVRIPVGWWIAYDPK-PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWS 264 (535)
Q Consensus 186 ~~~ik~~G~N~VRipv~~w~~~~p~-~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~ 264 (535)
-+.+++.|+...-+..+.-....+. +.....+..++.++++|+.|++.|..+|. ++..+. . .+. -.
T Consensus 63 ~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~-~~~~~~-------~---~~~--~~ 129 (283)
T PRK13209 63 VNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ-LAGYDV-------Y---YEQ--AN 129 (283)
T ss_pred HHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-ECCccc-------c---ccc--cH
Confidence 3345688998765532210000110 00001234688999999999999999876 443110 0 000 01
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC-cEEEE
Q 046395 265 DSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSS-AYVIL 329 (535)
Q Consensus 265 ~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~-~~ii~ 329 (535)
++..+.+.+.++.+++.-+.+.-.+++|..+.+.. .+ ..++.+.+++++.. .-+.+
T Consensus 130 ~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~--~~-------~~~~~~ll~~v~~~~lgl~~ 186 (283)
T PRK13209 130 NETRRRFIDGLKESVELASRASVTLAFEIMDTPFM--NS-------ISKALGYAHYLNSPWFQLYP 186 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCccc--CC-------HHHHHHHHHHhCCCccceEe
Confidence 35667778888888776666666788887643321 12 23566667777644 33444
No 214
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.14 E-value=30 Score=34.09 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+++++.+++.|+..||+++.-........-..-.++.++.+.+.++.|+++|+.|.+.+-
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 799999999999999998753210000000001123688899999999999999999884
No 215
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=43.04 E-value=2.7e+02 Score=28.84 Aligned_cols=103 Identities=9% Similarity=0.016 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHH-cCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 046395 220 LQALDNAFRWAQK-YGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPK 298 (535)
Q Consensus 220 l~~ld~~i~~a~~-~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~ 298 (535)
...+.++....++ -+++|+|.+.+...+...+. ...-.++.++.|++-+..+.++|+=+.-.+-||-..-..
T Consensus 55 ~~~~~~~~~lk~~~p~lkvlisiGG~~~~~~~f~-------~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~ 127 (362)
T cd02872 55 LGLYERFNALKEKNPNLKTLLAIGGWNFGSAKFS-------AMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRG 127 (362)
T ss_pred hhHHHHHHHHHhhCCCceEEEEEcCCCCCcchhH-------HHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCC
Confidence 3445555544444 38999998865321100000 000014667778777777778786444445565433211
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 046395 299 APDLKLDSLKTYYKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~ 329 (535)
....+...+..+++++.+++++..++..+.+
T Consensus 128 ~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~ 158 (362)
T cd02872 128 GPPEDKENFVTLLKELREAFEPEAPRLLLTA 158 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCcCeEEEE
Confidence 1122456788888888888888755544444
No 216
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=42.95 E-value=3.9e+02 Score=27.49 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHHHHH-hCC--CCcEEEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 046395 264 SDSDIQETVAIIDFLASR-YAD--HPSLVAIELMNEPKAP-DLKLDSLKTYYKAGYDTVRKYSSSAYVILSNR 332 (535)
Q Consensus 264 ~~~~~~~~~~~~~~la~r-y~~--~p~V~~~el~NEP~~~-~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~ 332 (535)
.++.++...+.++.+.++ |.+ -++|-+|+.++|+... ......+..+..++.+.+|+..|+..||.-++
T Consensus 142 ~~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG 214 (315)
T TIGR01370 142 DPEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNG 214 (315)
T ss_pred cHHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 345555555555555443 222 1256667777765431 23346788899999999999999987666543
No 217
>PRK06256 biotin synthase; Validated
Probab=41.80 E-value=1.9e+02 Score=29.76 Aligned_cols=127 Identities=11% Similarity=0.090 Sum_probs=70.2
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
.++++.++.|+++|++.+=+.+- . .+.--.... ...++..-++++.|++.||.|...+-- |
T Consensus 149 ~l~~e~l~~LkeaG~~~v~~~lE--t--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~--G------------ 210 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRYNHNLE--T--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII--G------------ 210 (336)
T ss_pred cCCHHHHHHHHHhCCCEEecCCc--c--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE--e------------
Confidence 46799999999999997755432 1 110000011 125677778999999999987553321 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec-CCCCC--CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 259 GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN-EPKAP--DLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N-EP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
.. ++.+...+.+..+.+ .+- .-+.+..++ .|..+ ...... ..-+.+++...|-..|+..|.++++.
T Consensus 211 -lg----Et~ed~~~~~~~l~~-l~~--~~v~i~~l~P~pGT~l~~~~~~~-~~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 211 -MG----ESLEDRVEHAFFLKE-LDA--DSIPINFLNPIPGTPLENHPELT-PLECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred -CC----CCHHHHHHHHHHHHh-CCC--CEEeecccccCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCeeEecCch
Confidence 00 344555566665543 332 222333333 12211 111111 22344567789999999998887643
No 218
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=41.72 E-value=24 Score=34.25 Aligned_cols=51 Identities=33% Similarity=0.639 Sum_probs=37.6
Q ss_pred hCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEe
Q 046395 177 WKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVD 240 (535)
Q Consensus 177 w~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIld 240 (535)
|+..+.|.||.+-++-|+.+|=| .|-.-+++++..++|+.|+.+|+..+|.
T Consensus 213 WDEs~readF~~e~e~gv~avVI-------------KPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 213 WDESLREADFAFEAEPGVRAVVI-------------KPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ecchhcccccccccCCCceEEEe-------------cccchhhHHHHHHHHHHHHhcCceeEee
Confidence 55555566666666666666655 2334568999999999999999999983
No 219
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=41.64 E-value=61 Score=34.24 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
++|++.+.+.|+..||+.++.... ....-+. -.+..++.+.++++.|+++|+.|.+..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~-s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKK-TREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 889999999999999997754221 0100011 124578999999999999999998864
No 220
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=41.35 E-value=55 Score=34.36 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCCEEEeCCcccccc-CCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAY-DPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~-~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.++|++.+.+.|+..||+.++..... ...-+. -.+..++.+.++|+.|+++|+.|.+..
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~-s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRK-DRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCc-CHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 48999999999999999977542110 000000 123468888899999999999987654
No 221
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=41.26 E-value=34 Score=34.68 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=42.3
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+.+|++...+.|+..||+.++--.. ...+-+. -.+..++.+.++|+.|+++|+.|...+-
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~-~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINC-SIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 5899999999999999997643111 0001111 1234788899999999999999976554
No 222
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=40.64 E-value=2.5e+02 Score=24.52 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=51.8
Q ss_pred CcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEE-eeCCcEEEeecCCCeEEEeccCCCCCCceE
Q 046395 28 KKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFR-LSNKQFIGLENQGNKLVAVSATEKFPEPFQ 99 (535)
Q Consensus 28 ~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~a~~~~~~~~e~f~ 99 (535)
|.||.-...| .|..-++.- +..-.|+++.++.+.+.+| +..+.|+|.+. .|.|-+.. .+..-=.|.
T Consensus 8 ~~~L~I~~dG--~V~Gt~~~~--~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~-~G~ly~s~-~~~~dC~F~ 74 (123)
T cd00058 8 GFHLQILPDG--TVDGTRDDS--SSYTILERIAVAVGVVSIKGVASCRYLCMNK-CGKLYGSK-GFTEECLFR 74 (123)
T ss_pred CeEEEEcCCC--cEecccCCC--CCCceEEEEECCCCEEEEEEcccceEEEECC-CCCEEECC-CCCCCCEEE
Confidence 7777655322 677777766 7888999999999999999 56999999997 77788877 776666674
No 223
>PRK14566 triosephosphate isomerase; Provisional
Probab=40.46 E-value=3.9e+02 Score=26.72 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
|--...|+++|++.|=|.=+ +. .. +-.+.=+.+.+-++.|.++||.+|++.--
T Consensus 85 evS~~mL~d~G~~~viiGHS-----ER--R~-~f~Etd~~v~~Kv~~al~~gl~pIvCvGE 137 (260)
T PRK14566 85 EVSGQMLKDAGCRYVIIGHS-----ER--RR-MYGETSNIVAEKFAAAQKHGLTPILCVGE 137 (260)
T ss_pred ccCHHHHHHcCCCEEEECcc-----cc--cC-CCCcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34556889999999977322 11 11 22233455666889999999999998763
No 224
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=39.79 E-value=85 Score=31.61 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHAL 244 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~ 244 (535)
++-+++.+++|+.-|=|--+|................-..|.++++.|++.|+.|+|=.|+.
T Consensus 35 k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~ 96 (273)
T PF10566_consen 35 KRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE 96 (273)
T ss_dssp HHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 67788899999999999888843111100000111134678999999999999999988864
No 225
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=39.59 E-value=4e+02 Score=26.96 Aligned_cols=67 Identities=7% Similarity=0.104 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCC--------CCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 260 FQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPK--------APDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~--------~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
...|.++-++....++++|.+. +...|. .++.-.-. ...........|+.++...+|+..|. ++++.
T Consensus 117 VkYW~~eWkdii~~~l~rL~d~--GfdGvy-LD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~-~~Vi~ 191 (300)
T COG2342 117 VKYWEPEWKDIIRSYLDRLIDQ--GFDGVY-LDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPL-FRVIP 191 (300)
T ss_pred eeccCHHHHHHHHHHHHHHHHc--cCceEE-EeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Confidence 3467777777777777777763 112232 33332220 01234567888999999999999999 44443
No 226
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=39.49 E-value=3.5e+02 Score=25.93 Aligned_cols=125 Identities=16% Similarity=0.233 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCEEEeCCccccc----------------cCCCCCCCCcc-------------chHHHHHHHHHHHHHcC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIA----------------YDPKPPKPFVG-------------GSLQALDNAFRWAQKYG 234 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~----------------~~p~~~~~~~~-------------~~l~~ld~~i~~a~~~G 234 (535)
+-+...++.||..|-+|+.+-.- ....+++.++. ..-+.||.+|+.|++.|
T Consensus 20 ~r~~~a~~~gf~~vev~~p~~e~a~~~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~ai~yAkalg 99 (264)
T KOG4518|consen 20 QRYGAAASAGFKLVEVSIPYTEPAEKLREAADEYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTAIEYAKALG 99 (264)
T ss_pred HHHHHHHhCCceEEEecCCCCChHHHHHHhhhcchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHHHHHHHHhC
Confidence 44556678899999998875210 00011111221 13567888888888888
Q ss_pred CEEEEecCCC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHH
Q 046395 235 MKVIVDLHAL-RVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKA 313 (535)
Q Consensus 235 i~VIldlH~~-pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~ 313 (535)
--=|=-+-+. ++++. . ....+-+.+-++..|+.++.+.-|--+|.+|-... +.-...-|++
T Consensus 100 C~rIHlmAG~~k~g~d----------~----~~~~~ty~eNlr~AA~~l~~~kligliEPINkyt~----PgY~ln~y~~ 161 (264)
T KOG4518|consen 100 CCRIHLMAGIPKSGDD----------L----ENAHQTYSENLRFAAEKLKEHKLIGLIEPINKYTI----PGYHLNNYED 161 (264)
T ss_pred CceEEEeccCCCCCch----------H----HHHHHHHHHHHHHHHHHhhhhceeeeecchhcccC----cchhcCCHHH
Confidence 6443222222 21110 0 13445566777888888888877766777774332 2233444566
Q ss_pred HHHHHHhcCCCcE
Q 046395 314 GYDTVRKYSSSAY 326 (535)
Q Consensus 314 ~~~aIR~~~p~~~ 326 (535)
+.+.+.....+.+
T Consensus 162 Aa~Ilq~v~~~Nl 174 (264)
T KOG4518|consen 162 AADILQMVQSNNL 174 (264)
T ss_pred HHHHHHHhcCCce
Confidence 6677776665555
No 227
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=39.45 E-value=3.1e+02 Score=27.13 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCC--CEEEeCCccccccCCCCC-CCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGL--NAVRIPVGWWIAYDPKPP-KPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~--N~VRipv~~w~~~~p~~~-~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
.+.++.+++.|| .++=|-..|..... .. -.++++.+....++|+.+++.|++|++.+|.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~~--~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGYG--DFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCCc--eeeeecChhhCCCHHHHHHHHHHCCCEEEEEeCh
Confidence 455556666664 35555555432111 11 0255666777899999999999999998874
No 228
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=38.96 E-value=20 Score=27.62 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=21.3
Q ss_pred cccHHHHHhhCCCCCCCCceEEEecC
Q 046395 492 VMHVNQIRGILPSRVRSKREDGIKNL 517 (535)
Q Consensus 492 ~~~~~~i~~~lphr~p~~~~~~~k~v 517 (535)
+.|.+-|.+++.+|||..+++-+++-
T Consensus 8 iVDfEY~eEvIRNRyPelsi~si~d~ 33 (75)
T PF05798_consen 8 IVDFEYTEEVIRNRYPELSITSIQDS 33 (75)
T ss_pred EeehHhHHHHHHccCCceEEEEeecC
Confidence 45778899999999998888877653
No 229
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.54 E-value=83 Score=34.52 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecC-CCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLH-ALR 245 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH-~~p 245 (535)
+++.++.|+++|++.|-+.+- ...+..- ..+. ....+...++++.++++||.+.+++- +.|
T Consensus 286 d~ell~~l~~aG~~~v~iGiE--S~~~~~L-~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTE--AAAQATL-DHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccc--cCCHHHH-HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 567789999999987777552 2211000 0011 11466778899999999999877653 444
No 230
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=38.29 E-value=35 Score=34.44 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
.+.+++..++.|+..|++.++-... ....-+. -.+..++.+.++++.|+++|++|.+.+-.
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~-t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRK-TPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 3678999999999999997743111 0000011 12457899999999999999999987754
No 231
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=37.68 E-value=3.8e+02 Score=25.81 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
|-...+|+++|+..|=|.-+-. ..+-.+.=+.+-+=+..|.+.||+||.++--.-- .+. .
T Consensus 76 EiS~~mlkd~G~~wVIlGHSER--------R~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~le---------eRE--a- 135 (247)
T KOG1643|consen 76 EISAEMLKDLGAEWVILGHSER--------RHVFGESDEFIADKTAHALAEGLKVIACIGETLE---------ERE--A- 135 (247)
T ss_pred ccCHHHHHhCCCCEEEecchhh--------hhhhCCchHHHHHHHHHHHHcCCeEEEEecccHH---------hhh--c-
Confidence 4556788999999998743311 1122223345555677889999999998763100 000 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
....+...+-+..++++-++-.+|+ +.=||.+
T Consensus 136 --G~t~dVv~~Ql~aiad~v~~w~niv---iAYEPVW 167 (247)
T KOG1643|consen 136 --GKTLDVVFRQLKAIADKVKDWSNIV---IAYEPVW 167 (247)
T ss_pred --CchHHHHHHHHHHHHHhcCCccceE---EEeecee
Confidence 0345666677778888888766553 4557876
No 232
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=37.61 E-value=1.1e+02 Score=32.21 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=40.2
Q ss_pred CccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEE
Q 046395 215 FVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLV 289 (535)
Q Consensus 215 ~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~ 289 (535)
|.+..++.|+.++..|.++||+||++.-+ .+.....+.+++++++.+-+-.|.
T Consensus 52 Y~~~~~~~L~~~L~~~~~~gIkvI~NaGg----------------------~np~~~a~~v~eia~e~Gl~lkvA 104 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEKGIKVITNAGG----------------------LNPAGCADIVREIARELGLSLKVA 104 (362)
T ss_pred chHHHHHHHHHHHHHHHhCCCCEEEeCCC----------------------CCHHHHHHHHHHHHHhcCCCeeEE
Confidence 77788999999999999999999996432 133447788888888765554443
No 233
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=37.51 E-value=2.5e+02 Score=27.40 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEW 263 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W 263 (535)
+--+.+++.|+...-+....-....+.+.. . ...++.+.++++.|.+.|..+++............. +
T Consensus 49 ~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~----------~ 116 (274)
T COG1082 49 ELKELLADYGLEITSLAPFSNNLLSPDEEE-R-EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPD----------S 116 (274)
T ss_pred HHHHHHHHcCcEEEeecccCCCcCCCchhh-H-HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCC----------C
Confidence 344455788988877432221122332221 2 346888888999999999987775554321111000 1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCC--CCCCCChHHHHHHHHHHHHHHHhcCCCcE-EEE
Q 046395 264 SDSDIQETVAIIDFLASRYADHPSLVAIELMNEP--KAPDLKLDSLKTYYKAGYDTVRKYSSSAY-VIL 329 (535)
Q Consensus 264 ~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP--~~~~~~~~~~~~~~~~~~~aIR~~~p~~~-ii~ 329 (535)
.....+.+.+.++.+++.-+.. +..+.+|| +.. .+..-..+.++.+++.+...+ +++
T Consensus 117 ~~~~~~~~~~~l~~l~~~a~~~----~i~l~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~l 176 (274)
T COG1082 117 PEEARERWAEALEELAEIAEEL----GIGLALENHHHPG-----NVVETGADALDLLREVDSPNVGLLL 176 (274)
T ss_pred CcccHHHHHHHHHHHHHHHHHh----CCceEEeecCCcc-----ceeecCHHHHHHHHhcCCCceEEEE
Confidence 1122355556666555543333 23344444 321 112222556777777775533 444
No 234
>PLN02923 xylose isomerase
Probab=37.26 E-value=5.6e+02 Score=27.60 Aligned_cols=127 Identities=13% Similarity=0.200 Sum_probs=67.1
Q ss_pred EEEeCCccccccCCC---------CCCCCcc------chHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC
Q 046395 196 AVRIPVGWWIAYDPK---------PPKPFVG------GSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF 260 (535)
Q Consensus 196 ~VRipv~~w~~~~p~---------~~~~~~~------~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~ 260 (535)
++|+.|.||+-+.-. -..||.. ....++|.+++...+.|+.- +++|..--. ..+.
T Consensus 83 hlRFav~yWHTf~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~~y-~cFHD~Dl~---------Peg~ 152 (478)
T PLN02923 83 WMRFSVAFWHTFRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGVDR-WCFHDRDIA---------PDGK 152 (478)
T ss_pred hhhhhheeeeecCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCe-EccCccccC---------CCCC
Confidence 478899998543211 1124542 26778899999999999865 467742100 0010
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec---CCCCC----CCChHHHHHHH----HHHHHHHHhcCCCcEEEE
Q 046395 261 QEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN---EPKAP----DLKLDSLKTYY----KAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 261 ~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N---EP~~~----~~~~~~~~~~~----~~~~~aIR~~~p~~~ii~ 329 (535)
.. .+..+...++.+.+.+.-+...-.+-|.+-| .|..- ..+...+..|. ++.+++-++++...+|++
T Consensus 153 sl--~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~GAaTspd~dV~ayAaaqvk~ald~t~eLGgenYVfW 230 (478)
T PLN02923 153 TL--EESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMHGAATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFW 230 (478)
T ss_pred CH--HHHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEec
Confidence 00 1232233333444333333333344466544 44321 12223444442 344566788899999999
Q ss_pred cCCCC
Q 046395 330 SNRLG 334 (535)
Q Consensus 330 ~~~~g 334 (535)
+++=|
T Consensus 231 GGREG 235 (478)
T PLN02923 231 GGREG 235 (478)
T ss_pred CCccc
Confidence 87533
No 235
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=37.18 E-value=4.3e+02 Score=27.74 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc----cchHHHHHHHHHHHHHcCCE-EEEecCCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV----GGSLQALDNAFRWAQKYGMK-VIVDLHALRVSQNGSPHS 254 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~----~~~l~~ld~~i~~a~~~Gi~-VIldlH~~pg~~ng~~~s 254 (535)
.++++.++.||++|++.+-+.+-. . .+.--.... ...++..-+.++.|.+.||. |-.++--
T Consensus 160 ~lt~e~l~~Lk~aGv~r~~i~lET--~-~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~----------- 225 (371)
T PRK09240 160 PLSEEEYAELVELGLDGVTVYQET--Y-NPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALL----------- 225 (371)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEec--C-CHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEe-----------
Confidence 367999999999999966554421 1 110000010 11456666789999999996 5333321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChH-HHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLD-SLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~-~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
|-..| .+.+-.+...++.|-.+|...+..+-+..++--.++-.+.. .=..-+.+++.+.|-..|+.-|.++++-
T Consensus 226 ----Glge~-~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~ 300 (371)
T PRK09240 226 ----GLSDW-RTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRE 300 (371)
T ss_pred ----cCCcc-HHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCC
Confidence 11111 13344455666777777877654332222221111100000 1122345678888999999988887643
No 236
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=37.03 E-value=22 Score=31.49 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.9
Q ss_pred ceEEEecCCccCCccccC
Q 046395 510 REDGIKNLKEFGDDYYRP 527 (535)
Q Consensus 510 ~~~~~k~v~~~~~~~f~~ 527 (535)
.++|.|+|+ .||+||+|
T Consensus 26 ~~~a~~~v~-~~~~~f~g 42 (138)
T PF07977_consen 26 RIVARKNVT-PDEPFFDG 42 (138)
T ss_dssp EEEEEEEE--TTSGGGGC
T ss_pred EEEEEEEeC-CCCCEEEc
Confidence 399999999 99999997
No 237
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=36.81 E-value=3.7e+02 Score=25.36 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEW 263 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W 263 (535)
-|+..+|+.|+..|=|- ..+|..|.. ..+..-++.|++.||.+=.--...+.
T Consensus 20 IDw~~v~~~gi~Fv~iK--------ATEG~~~~D---~~f~~n~~~A~~~Gl~vGaYHf~~~~----------------- 71 (190)
T cd06419 20 IDFNSLQSNGISFVYLR--------ATQGASYFD---DNFLSNFSRAQGTGLSVGVIHTFSFS----------------- 71 (190)
T ss_pred cCHHHHHhCCCeEEEEE--------eecCCCccC---hhHHHHHHHHHHCCCCEEEEEEeecC-----------------
Confidence 57888999998877552 123433422 34566778899999988542111110
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 264 SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 264 ~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
....+++..+++.+...-.+-|-++-+|.... . ..+...+.+++.+.++.|+++....+||..
T Consensus 72 -~~~~~QA~~F~~~v~~~~~~lp~vlD~E~~~~--~-~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 72 -STAAAQYRYFIRKVGNNTGNLPIAIYVSYYGD--Y-NPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred -CCHHHHHHHHHHhCCCCCCCCCeEEEEecCCC--C-CCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 02445666677766554445566665554322 1 135678899999999999997666665543
No 238
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=36.59 E-value=1.7e+02 Score=25.91 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=51.2
Q ss_pred cCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC--CCCcEEEEEeecCCCCCCCChHHHHHH
Q 046395 233 YGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYA--DHPSLVAIELMNEPKAPDLKLDSLKTY 310 (535)
Q Consensus 233 ~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~--~~p~V~~~el~NEP~~~~~~~~~~~~~ 310 (535)
-...+|+..|+.|-.... .+ +.|.++..+..+.|+++.+ ..+..++|+-.-=|. ..+...
T Consensus 17 ~~~~llfsaHgiP~~~~~-------~g-----d~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~------~Wl~P~ 78 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK-------KG-----DPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPG------EWLEPS 78 (135)
T ss_pred CCCEEEEEcCCCHHHHhh-------CC-----CCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCC------CCCCCC
Confidence 578999999998743211 11 2588899999999999987 555667777322121 112333
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCC
Q 046395 311 YKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 311 ~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
..++++.+.+.+-++++++.-++
T Consensus 79 ~~~~l~~l~~~G~~~i~v~p~gF 101 (135)
T cd00419 79 TDDALEELAKEGVKNVVVVPIGF 101 (135)
T ss_pred HHHHHHHHHHcCCCeEEEECCcc
Confidence 44555555555666676665444
No 239
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=36.28 E-value=63 Score=27.74 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKV 237 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~V 237 (535)
-++++||+.|++.||.+|== .+-+.+.+ ..-..+.+-++|+++||.-
T Consensus 14 Q~~~~d~~~la~~GfktVIn-----lRpd~E~~------~qp~~~~~~~~a~~~Gl~y 60 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVIN-----LRPDGEEP------GQPSSAEEAAAAEALGLQY 60 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE------S-TTSTT------T-T-HHCHHHHHHHCT-EE
T ss_pred CCCHHHHHHHHHCCCcEEEE-----CCCCCCCC------CCCCHHHHHHHHHHcCCeE
Confidence 35689999999999999832 11111111 1122344557899999974
No 240
>PLN02429 triosephosphate isomerase
Probab=36.12 E-value=5e+02 Score=26.74 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
|=-...|+++|++.|=|.=+ +. .. +-.+.-+.+.+=+..|.++||.+|+++--
T Consensus 137 EVSa~mLkd~Gv~~ViiGHS-----ER--R~-~f~Etd~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 137 EISVEQLKDLGCKWVILGHS-----ER--RH-VIGEKDEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred cCCHHHHHHcCCCEEEeCcc-----cc--CC-CCCcCHHHHHHHHHHHHHCcCEEEEEcCC
Confidence 44567789999999877321 11 11 21222344444455699999999998763
No 241
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=35.74 E-value=4.3e+02 Score=25.87 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEee
Q 046395 217 GGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELM 294 (535)
Q Consensus 217 ~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~ 294 (535)
+..++.+.++++.|++.|..+|+ +|. |.. . . ....+..+++++.++.+++. ...-.+++|.+
T Consensus 80 ~~~~~~l~~~i~~A~~lGa~~vv-~h~--g~~------~---~--~~~e~~~~~~~~~l~~l~~~--~~gv~l~lEn~ 141 (273)
T smart00518 80 EKSIERLIDEIKRCEELGIKALV-FHP--GSY------L---K--QSKEEALNRIIESLNEVIDE--TKGVVILLETT 141 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE-Ecc--ccc------c---C--CCHHHHHHHHHHHHHHHHhc--cCCcEEEEecc
Confidence 45788899999999999998766 453 210 0 0 00135567778888888873 33333445544
No 242
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=35.70 E-value=49 Score=33.30 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=43.2
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+++|++...+.|+..|++++.-... ....-+. -.+..++.+.++++.|+++|+.|.+.+-
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~-s~~~~~~~~~~~v~~ak~~G~~v~~~i~ 135 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINC-SIAESLERFEPVAELAKAAGLRVRGYVS 135 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 5789999999999999998754211 0100011 1234788889999999999999988765
No 243
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=35.68 E-value=1.7e+02 Score=24.36 Aligned_cols=94 Identities=13% Similarity=0.237 Sum_probs=52.9
Q ss_pred ceeEEEEeecCcEEEEe---cCCCceEEeccCCCCCCCCceeEEEEecCCeEEEE-eeCCcEEEeecCC--CeEEEeccC
Q 046395 18 TQVQLISTKLKKYLTAE---NGSETILMANHNSSSTSSWQTFRLWRINETFYNFR-LSNKQFIGLENQG--NKLVAVSAT 91 (535)
Q Consensus 18 ~~~~~~~~~~~~~~~a~---~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~a~~~~ 91 (535)
.+|++++- .|+.|.+. ..|+..+++..... .. ++|.......-.. ...+.-+.+.... ..|+-..-.
T Consensus 3 g~i~~~~~-~~~cl~~~~~~~~~~~v~l~~c~~~--~~----Q~w~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l~~C~ 75 (124)
T PF00652_consen 3 GYIRNVNK-SGLCLDVQGSTKNGSPVVLYPCDGS--DN----QLWRFDPDGQIRSNNNPNLCLDVDGSSPGTKIVLWPCD 75 (124)
T ss_dssp EEEEEEEG-GGEEEEEGGSSSTTTBEEEEE--SS--GG----GEEEEETTSBEEETTETTEEEEESSSSTTEBEEEEETT
T ss_pred eEEEEeeC-CCCeEEEcCCCCCCCEEEEEECCCC--Cc----eeEEEcCCCceeeccCcceEEEeeccCCCceEEEeecc
Confidence 45666666 99999999 55666666655553 11 6776665533333 2233344444422 136666656
Q ss_pred CCCC-CceEEEecCCCCceeEEEec-CCceEEEec
Q 046395 92 EKFP-EPFQITRKNGEPHRVRFRAS-NGYFLQAKS 124 (535)
Q Consensus 92 ~~~~-e~f~~~~~~~~~~~v~I~~~-nG~flq~~~ 124 (535)
+... +.|.+... -+|... .|..|.+.+
T Consensus 76 ~~~~~Q~W~~~~~------~~i~n~~s~~cL~~~~ 104 (124)
T PF00652_consen 76 SNSSNQRWKFDPD------GRIRNKNSGLCLDVKG 104 (124)
T ss_dssp TTGGGGBEEEETT------SBEEETTTTEEEEEGG
T ss_pred CCccCCeEEEcCC------eeEEeCCCCEEEEecC
Confidence 5555 89988771 234444 477777753
No 244
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=35.41 E-value=32 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.3
Q ss_pred CCCCCceeEEEEeecCcEEEEe
Q 046395 13 DLLDGTQVQLISTKLKKYLTAE 34 (535)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~a~ 34 (535)
.+..|+.|+||-+..|+||++.
T Consensus 3 ~v~~g~~vrL~H~~tg~yL~s~ 24 (57)
T smart00472 3 FVRWGDVVRLRHVTTGRYLHSH 24 (57)
T ss_pred ccccCCEEEEEEhhhCcEeecC
Confidence 3568999999999999999864
No 245
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=34.80 E-value=2.9e+02 Score=28.30 Aligned_cols=87 Identities=21% Similarity=0.370 Sum_probs=60.8
Q ss_pred hHHHHHHHHHcCCC-EEEeCCccccccCCCCCCCCccchHHHHHH--------HHHHHHHcCCE-EEEecCCCCCCCCCC
Q 046395 182 TEEDFKFMSQNGLN-AVRIPVGWWIAYDPKPPKPFVGGSLQALDN--------AFRWAQKYGMK-VIVDLHALRVSQNGS 251 (535)
Q Consensus 182 te~D~~~ik~~G~N-~VRipv~~w~~~~p~~~~~~~~~~l~~ld~--------~i~~a~~~Gi~-VIldlH~~pg~~ng~ 251 (535)
.++.|..+|+.|+. +|=|++. +. .|-.++.++.+.+ +++.|.++||. +++|.-..|-
T Consensus 135 ~~eel~llk~yg~aavIvLa~d------~~--~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpv----- 201 (308)
T PRK00979 135 EEEEIEALKESDIKAAIVLAFD------PM--DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPL----- 201 (308)
T ss_pred CHHHHHHHHHhCCceEEEEEcC------CC--CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcC-----
Confidence 34679999999977 6666553 21 2334567888999 89999999994 5555544331
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 046395 252 PHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPK 298 (535)
Q Consensus 252 ~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~ 298 (535)
+ ....+.+.++.+.++| +.|.+.| +-|=+.
T Consensus 202 --s------------~~~~tl~aI~~iK~~~-G~pt~~G--lSNiS~ 231 (308)
T PRK00979 202 --P------------GSGAAIRAIFAVKAKF-GYPVGCA--PHNAPS 231 (308)
T ss_pred --c------------cHHHHHHHHHHHHHHc-CCCeEEE--EeCCch
Confidence 0 1347788888999999 7787765 677665
No 246
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.78 E-value=4.3e+02 Score=25.58 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=70.2
Q ss_pred HHHHH-HHHHcCCCEEEe--CCccccccCCC---CCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCC
Q 046395 183 EEDFK-FMSQNGLNAVRI--PVGWWIAYDPK---PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGS 256 (535)
Q Consensus 183 e~D~~-~ik~~G~N~VRi--pv~~w~~~~p~---~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~ 256 (535)
.++++ .+++.|+...=+ |.+-|...... .+.+ .+...+.++++|+.|++.|..+|.-..+.. +
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~--------~-- 109 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGR-EEEFREGVALAIAYARALGCPQVNCLAGKR--------P-- 109 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCcc-HHHHHHHHHHHHHHHHHhCCCEEEECcCCC--------C--
Confidence 34444 556899986644 33222211100 0010 123468899999999999999876322210 0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcE-EEE
Q 046395 257 RDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAY-VIL 329 (535)
Q Consensus 257 ~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~-ii~ 329 (535)
.... .++..+.+++.++.+++.-++..-.+++|..|=+..+. .+-.-.+++.+.|++++..++ +.+
T Consensus 110 --~~~~-~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~----~~l~t~~~~~~li~~v~~~~~~i~~ 176 (254)
T TIGR03234 110 --AGVS-PEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPG----FFLTTTEQALAVIDDVGRENLKLQY 176 (254)
T ss_pred --CCCC-HHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCC----ChhcCHHHHHHHHHHhCCCCEeEee
Confidence 0000 03456677788888877665555667787665432111 122345666777887774444 443
No 247
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=34.69 E-value=4.9e+02 Score=28.07 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCC--CccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKP--FVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF 260 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~--~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~ 260 (535)
.+..+.+++.|+|.+-+-- .+-...+. .....+..+.++-+.-+.|||+|.|.+.-+..-+-| | ....
T Consensus 186 kDYAR~laSiGINg~v~NN-----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinfaSP~~lG----g-L~TA 255 (684)
T COG3661 186 KDYARALASIGINGTVLNN-----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSINFASPMELG----G-LKTA 255 (684)
T ss_pred HHHHHHHhhcCcceEEecc-----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEeccCCccccC----C-cCcC
Confidence 4555677899999987721 11111111 223468888899999999999999988743211111 1 1110
Q ss_pred CCCChHHHHHHHHHHHHHHH-HhCCCCcEEEEEeec
Q 046395 261 QEWSDSDIQETVAIIDFLAS-RYADHPSLVAIELMN 295 (535)
Q Consensus 261 ~~W~~~~~~~~~~~~~~la~-ry~~~p~V~~~el~N 295 (535)
+..-++..++|+.-+. -|+--|..-||-+--
T Consensus 256 ----DPLDe~VrawWkeka~~IY~yIPDFGGFLVKA 287 (684)
T COG3661 256 ----DPLDEAVRAWWKEKADEIYKYIPDFGGFLVKA 287 (684)
T ss_pred ----CcccHHHHHHHHHHHHHHHHhcccccceEEec
Confidence 1233556677776554 466666666665543
No 248
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.61 E-value=92 Score=32.31 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=37.9
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+.+|++...+.|+..||+.+..- ..+...+.++++++.|+.|...+-
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEE
Confidence 57899999999999999966420 224578899999999999987664
No 249
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.47 E-value=3.9e+02 Score=24.96 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEW 263 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W 263 (535)
-|++.+|+.|+..|=|=+. +|..|.. ..++.-++.|++.||.|=+-...... .
T Consensus 15 id~~~vk~~gi~fviiKat--------eG~~~~D---~~~~~~~~~a~~~Gl~vG~Yhy~~~~------------~---- 67 (191)
T cd06413 15 IDWARVRAQGVSFAYIKAT--------EGGDHVD---KRFAENWRGARAAGLPRGAYHFFTFC------------R---- 67 (191)
T ss_pred cCHHHHHhCCCcEEEEEEc--------CCCCccC---HHHHHHHHHHHHcCCceEEEEEEecC------------C----
Confidence 4788999999887755321 2222311 45666788899999977443221110 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 264 SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 264 ~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
...+++..+++.+...-.+-|-++-+|-..... ...+...+.++.++.++.|++.....+++.+
T Consensus 68 --~~~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~-~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 131 (191)
T cd06413 68 --SGAEQAANFIRNVPKDPGALPPVVDVEWNGNSA-TCPSAEEVLAELQVFLDALEAHYGKRPIIYT 131 (191)
T ss_pred --CHHHHHHHHHHhcCCCCCcCCeEEEEEecCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 233566677776654333445555555322211 1134567788888899999886444444443
No 250
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.43 E-value=89 Score=32.46 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=38.6
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
+.+|++...+.|+..||+.+..- ..+.+.+.++.|++.|+.|.+.+-.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 57899999999999999965321 2345788999999999999887653
No 251
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.38 E-value=73 Score=33.18 Aligned_cols=57 Identities=7% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHAL 244 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~ 244 (535)
-..+.++++|.++|-+-+.| .|+.........++.+.++.+.|.++||-+++.+-.+
T Consensus 110 ~sve~a~~~GAdAVk~lv~~----~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y 166 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYY----RPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTY 166 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEe----CCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 34667899999999997765 2321111234578899999999999999999975443
No 252
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=34.25 E-value=1.1e+02 Score=23.01 Aligned_cols=44 Identities=34% Similarity=0.398 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
++-++..++.|++.|=|- +.. .+..+.++.+.++++||+||.-+
T Consensus 18 ~~~~~~a~~~g~~~v~iT-------Dh~--------~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 18 EELVKRAKELGLKAIAIT-------DHG--------NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred HHHHHHHHHcCCCEEEEe-------eCC--------cccCHHHHHHHHHHcCCeEEEEE
Confidence 678888899999999762 111 22334567788889999998643
No 253
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=33.31 E-value=3.9e+02 Score=27.98 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCC----ccchHHHHHHHHHHHHHcCCE-EEEecC-CCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPF----VGGSLQALDNAFRWAQKYGMK-VIVDLH-ALRVSQNGSPH 253 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~----~~~~l~~ld~~i~~a~~~Gi~-VIldlH-~~pg~~ng~~~ 253 (535)
.+++++++.|+++|++.+-+.+-. . ++.-.... ....++..-+.++.|.+.||. |-+++= +.+
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lET--~-~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~-------- 227 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQET--Y-NEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLD-------- 227 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeec--C-CHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCc--------
Confidence 378999999999999976664421 1 11000000 011455556688999999996 434322 211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec---CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN---EPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N---EP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
.| ....-.+...++.|-.+|...+.-+-+-.++ .|..+. ...-..-+.+++.++|-..|+.-|.++
T Consensus 228 --------e~-~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~--~~l~~~~~~~~i~~~R~~~P~~~i~~s 296 (366)
T TIGR02351 228 --------DW-RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPK--VIVTDRELVQIICAYRLFDPFVEISLS 296 (366)
T ss_pred --------hh-HHHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCC--CcCCHHHHHHHHHHHHHhCcccccEEe
Confidence 11 1222334456667777777643222111111 122111 111133456778899999999998888
Q ss_pred CCC
Q 046395 331 NRL 333 (535)
Q Consensus 331 ~~~ 333 (535)
++-
T Consensus 297 ~g~ 299 (366)
T TIGR02351 297 TRE 299 (366)
T ss_pred cCC
Confidence 743
No 254
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=32.92 E-value=99 Score=31.86 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=78.7
Q ss_pred hHHHHHHHHHcCCCEEEeCCcc---cccc-CCCC-----C--------CCCccchHHHHHHHHHHHHHcCCEEEEecCC-
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGW---WIAY-DPKP-----P--------KPFVGGSLQALDNAFRWAQKYGMKVIVDLHA- 243 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~---w~~~-~p~~-----~--------~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~- 243 (535)
-++-++.|+..++|++=+-+.- |.+. ...| + +.| ..+.++++|+.|+++||.||..+-.
T Consensus 20 ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~y---T~~di~~lv~yA~~~gI~VIPeid~P 96 (351)
T PF00728_consen 20 IKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYY---TKEDIRELVAYAKERGIEVIPEIDTP 96 (351)
T ss_dssp HHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEB---EHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccC---CHHHHHHHHHHHHHcCCceeeeccCc
Confidence 3678889999999999886531 1111 1111 0 023 4688999999999999999976632
Q ss_pred -C--------CCCCCC---CCC----C-CCCC---CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC--C
Q 046395 244 -L--------RVSQNG---SPH----S-GSRD---GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP--D 301 (535)
Q Consensus 244 -~--------pg~~ng---~~~----s-g~~~---~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~--~ 301 (535)
. |..... .+. + .... ..+.-.++..+...++++++++.|.. + .+.+ =.-|.... .
T Consensus 97 GH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~-~-~iHi-GgDEv~~~~~~ 173 (351)
T PF00728_consen 97 GHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPS-K-YIHI-GGDEVNYNCWN 173 (351)
T ss_dssp SS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTS-S-EEEE-E-TSTTTHHHH
T ss_pred hHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCC-C-eEEe-CCccccccccc
Confidence 1 110000 000 0 0000 00111166777788888888888873 3 2211 13444320 0
Q ss_pred ---------------CChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 302 ---------------LKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 302 ---------------~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
...+.+..|..++.+.+++.+.. ++++.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~W~D~~ 219 (351)
T PF00728_consen 174 NSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PIIWNDML 219 (351)
T ss_dssp CHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEEESTTT
T ss_pred CCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEEEcccc
Confidence 01123445677888899998766 66776644
No 255
>PRK05474 xylose isomerase; Provisional
Probab=32.71 E-value=6.6e+02 Score=27.07 Aligned_cols=125 Identities=20% Similarity=0.330 Sum_probs=65.5
Q ss_pred EEEeCCccccccC-----CCCC----CCCc------cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC
Q 046395 196 AVRIPVGWWIAYD-----PKPP----KPFV------GGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF 260 (535)
Q Consensus 196 ~VRipv~~w~~~~-----p~~~----~~~~------~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~ 260 (535)
++|+.|.||+-+. |-.+ .||. +....++|.+++...+.|+.- +++|-.--. ..+.
T Consensus 39 ~lrFa~~~Wht~~~~G~DpFG~~T~~rpw~~~~d~~~~a~~k~d~afe~~~kLg~~~-~~FHD~D~~---------peg~ 108 (437)
T PRK05474 39 HLRFAVAYWHTFCWPGADPFGGGTFQRPWDQPGDALDLAKAKADAAFEFFTKLGVPY-YCFHDVDVA---------PEGA 108 (437)
T ss_pred hhceeeeecccCCCCCCCCCCCccccCCCcCCCCHHHHHHHHHHHHHHHHHHhCCCe-eccCccccC---------CCCC
Confidence 3688999885322 1111 2233 124667888999999999865 467742100 0010
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec---CCCCC----CCChHHHHHH----HHHHHHHHHhcCCCcEEEE
Q 046395 261 QEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN---EPKAP----DLKLDSLKTY----YKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 261 ~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N---EP~~~----~~~~~~~~~~----~~~~~~aIR~~~p~~~ii~ 329 (535)
.. .+......++++.+.+.-+...-.+-|.+-| .|.-- ..+-..++.+ .++++++-++.+.+.+|++
T Consensus 109 s~--~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tnpd~~Vra~A~~qvk~alD~~~eLGge~yV~W 186 (437)
T PRK05474 109 SL--KEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDVFAYAAAQVKTALDATKRLGGENYVFW 186 (437)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 00 1222233333333333333333334465444 44321 1223344444 4566778899999999999
Q ss_pred cCC
Q 046395 330 SNR 332 (535)
Q Consensus 330 ~~~ 332 (535)
+++
T Consensus 187 gGR 189 (437)
T PRK05474 187 GGR 189 (437)
T ss_pred CCc
Confidence 874
No 256
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.66 E-value=89 Score=33.83 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHcCCEEEEec
Q 046395 219 SLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 219 ~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.-+.+.++|+.|+++||.||..+
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEcc
Confidence 57889999999999999999766
No 257
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=32.54 E-value=57 Score=35.28 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCC-CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 046395 219 SLQALDNAFRWAQKYGMKVIVDLHALRV-SQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHP 286 (535)
Q Consensus 219 ~l~~ld~~i~~a~~~Gi~VIldlH~~pg-~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p 286 (535)
..+.+|.+++.|+++||+=||.|.+.|. ++..|..- ..--+.++++++.+-+.|+|+=
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~----------e~gF~yA~DLVr~Irs~YGDyF 148 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEE----------EGGFRYAVDLVRYIRSKYGDYF 148 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccc----------cCCchhHHHHHHHHHHHhCCeE
Confidence 4688999999999999999999997643 33222210 1124678899999999999953
No 258
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=31.66 E-value=2e+02 Score=32.48 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=40.1
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEe
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVD 240 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIld 240 (535)
.+++..+.+..++..++.|+..+|+--. . +.++-+...++.+++.|+.+...
T Consensus 91 ~~~~d~vv~~~v~~a~~~Gidv~Rifd~------------l--nd~~n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 91 RNYADDVVRAFVKLAVNNGVDVFRVFDA------------L--NDARNLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred ccCChHHHHHHHHHHHHcCCCEEEEccc------------C--cchHHHHHHHHHHHHcCCEEEEE
Confidence 4566667788999999999999999211 1 24677888899999999987765
No 259
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=31.50 E-value=1e+02 Score=33.48 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=38.7
Q ss_pred hCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 177 WKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 177 w~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
++.-+.+++++...+.|+..||+.... . ....+..+|+.|+++|+.|.+.+
T Consensus 93 ~pddvv~~~v~~A~~~Gvd~irif~~l---------n-----d~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 93 YADDVVESFVQKSVENGIDIIRIFDAL---------N-----DVRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEEec---------C-----cHHHHHHHHHHHHHcCCeEEEEE
Confidence 344466899999999999999995532 0 12358889999999999887655
No 260
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=31.46 E-value=33 Score=30.35 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=23.4
Q ss_pred cccHHHHHhhCCCCCCCCceEEEecCCccCCccccC
Q 046395 492 VMHVNQIRGILPSRVRSKREDGIKNLKEFGDDYYRP 527 (535)
Q Consensus 492 ~~~~~~i~~~lphr~p~~~~~~~k~v~~~~~~~f~~ 527 (535)
.+=+++|.++- |+.++++.|+|+ .|++||+|
T Consensus 15 ~l~vD~i~~~~----~~~~~~~~~~v~-~~~~~f~g 45 (140)
T TIGR01750 15 FLLVDRILELD----PGKRIVAIKNVT-INEPFFQG 45 (140)
T ss_pred eeeEEEEEEEc----CCCEEEEEEEcC-CCCCeecC
Confidence 34445555444 367899999999 99999996
No 261
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=31.45 E-value=1.3e+02 Score=31.17 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=49.2
Q ss_pred hhHhHHhhhCc-------cchHHHHHHHHHcCCCEEEeCCccccccCCC--CCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 046395 169 AAKLMRDHWKS-------YITEEDFKFMSQNGLNAVRIPVGWWIAYDPK--PPKPFVGGSLQALDNAFRWAQKYGMKVIV 239 (535)
Q Consensus 169 a~~~~~~hw~~-------~ite~D~~~ik~~G~N~VRipv~~w~~~~p~--~~~~~~~~~l~~ld~~i~~a~~~Gi~VIl 239 (535)
....++++|+. -.|.++.+.+.++|+..|++.|+.=...... .+. --..+..+-++.+.|.++++.||.
T Consensus 140 ~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gv--g~pqltAv~~~a~aa~~~~v~VIa 217 (343)
T TIGR01305 140 FVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGV--GYPQLSAVIECADAAHGLKGHIIS 217 (343)
T ss_pred HHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCC--CcCHHHHHHHHHHHhccCCCeEEE
Confidence 44566777852 4689999999999999999987631111100 111 112688888888889899999988
Q ss_pred ec
Q 046395 240 DL 241 (535)
Q Consensus 240 dl 241 (535)
|=
T Consensus 218 DG 219 (343)
T TIGR01305 218 DG 219 (343)
T ss_pred cC
Confidence 63
No 262
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=31.43 E-value=4.2e+02 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCC
Q 046395 220 LQALDNAFRWAQKYGMKVIVDLHAL 244 (535)
Q Consensus 220 l~~ld~~i~~a~~~Gi~VIldlH~~ 244 (535)
-..|..-|+.|++.|++|+|.+-+.
T Consensus 58 c~~~~~dI~~cq~~G~KVlLSIGG~ 82 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLLSIGGA 82 (280)
T ss_pred chhHHHHHHHHHHCCCEEEEEccCC
Confidence 4578889999999999999988764
No 263
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=31.36 E-value=1.4e+02 Score=28.71 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=31.7
Q ss_pred hHHHHHHHHHcCCCEEEe-CCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEE
Q 046395 182 TEEDFKFMSQNGLNAVRI-PVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKV 237 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRi-pv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~V 237 (535)
.+.-+++|+++|.++|.+ |+ .|- ..++.|..+.+.|.++|+++
T Consensus 137 vetAiaml~dmG~~SiKffPm---------~Gl----~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPM---------GGL----KHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE------------TTT----TTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeec---------CCc----ccHHHHHHHHHHHHHcCcee
Confidence 478899999999999997 22 222 26888999999999999998
No 264
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=31.20 E-value=5e+02 Score=25.26 Aligned_cols=150 Identities=12% Similarity=0.169 Sum_probs=80.1
Q ss_pred CeEEEEeeCCcEEEeecCCCeEEEeccCCCCCCceEEEecCCCCceeEEEecCCceEEEecccEEecC-----CCCCCCc
Q 046395 64 TFYNFRLSNKQFIGLENQGNKLVAVSATEKFPEPFQITRKNGEPHRVRFRASNGYFLQAKSEMQVTAD-----YKGPSTW 138 (535)
Q Consensus 64 ~~~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~e~f~~~~~~~~~~~v~I~~~nG~flq~~~~~~v~a~-----~~~~~~w 138 (535)
..++|.+..|.-|++=+.+| +|...+|.++-- +-.|+.+-+-..+..+-.-. -.+. +.
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNG--------AGKTT~Fymi~G--------lv~~d~G~i~ld~~diT~lPm~~RArlGi-gY 83 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNG--------AGKTTTFYMIVG--------LVRPDSGKILLDDEDITKLPMHKRARLGI-GY 83 (243)
T ss_pred eeeeEEEcCCcEEEEECCCC--------CCceeEEEEEEE--------EEecCCceEEECCcccccCChHHHhhcCc-cc
Confidence 35788888999999864333 567778975542 22233222223222221110 0111 23
Q ss_pred ccCCcccceecccccccccchhhhccChhhhhHhHHhhh-Ccc--chHHHH-HHHHHcCCCEEEeCCcccc---------
Q 046395 139 EENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHW-KSY--ITEEDF-KFMSQNGLNAVRIPVGWWI--------- 205 (535)
Q Consensus 139 ~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw-~~~--ite~D~-~~ik~~G~N~VRipv~~w~--------- 205 (535)
..-+||+|..-.+. +.-..+++-+. +.. ..+..+ ++|.+.++.++|-.-+.-.
T Consensus 84 LpQE~SIFr~LtV~--------------dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~E 149 (243)
T COG1137 84 LPQEASIFRKLTVE--------------DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVE 149 (243)
T ss_pred ccccchHhhcCcHH--------------HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHH
Confidence 46788888643221 01111222222 111 112223 4668889999986443311
Q ss_pred -----ccCCC---CCCC---CccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 046395 206 -----AYDPK---PPKP---FVGGSLQALDNAFRWAQKYGMKVIVDLHAL 244 (535)
Q Consensus 206 -----~~~p~---~~~~---~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~ 244 (535)
..+|. -.+| .++-....+.++|...+++||.|+|+=|+.
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 01121 0122 244588999999999999999999999974
No 265
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=30.92 E-value=2.2e+02 Score=26.06 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcC-CEEEE
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPF-VGGSLQALDNAFRWAQKYG-MKVIV 239 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~-~~~~l~~ld~~i~~a~~~G-i~VIl 239 (535)
.++++.++.|++.|+..|.+.+.... +.-.... ....++.+.+.++.+.++| +.|-+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGS---DEVLKAINRGHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCC---HHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEE
Confidence 45689999999999998888775311 1000000 1125688888999999999 55544
No 266
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=30.84 E-value=1.4e+02 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
+-.++...++|.+.|=+-..- . ....+.++++.|+++|+.+++|+|.
T Consensus 123 ~~qi~~a~~~GAD~VlLi~~~-----------l---~~~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 123 PYQIYEARAAGADAILLIVAA-----------L---DDEQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred HHHHHHHHHcCCCEEEEEecc-----------C---CHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 445666778888888773321 1 1267999999999999999999997
No 267
>PLN02591 tryptophan synthase
Probab=30.83 E-value=3e+02 Score=27.29 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
++=++.+++.|++-|=+| .-| ++..+.+++.|+++||..|.-+
T Consensus 96 ~~F~~~~~~aGv~Gviip-----------DLP-----~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVP-----------DLP-----LEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HHHHHHHHHcCCCEEEeC-----------CCC-----HHHHHHHHHHHHHcCCeEEEEe
Confidence 455677888898888774 122 3777889999999999998855
No 268
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.78 E-value=6.4e+02 Score=27.07 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHc--CCCEEEeCCccccccCC---CCCCCCccchHHHHHHHHHHHHHcCCEEE
Q 046395 179 SYITEEDFKFMSQN--GLNAVRIPVGWWIAYDP---KPPKPFVGGSLQALDNAFRWAQKYGMKVI 238 (535)
Q Consensus 179 ~~ite~D~~~ik~~--G~N~VRipv~~w~~~~p---~~~~~~~~~~l~~ld~~i~~a~~~Gi~VI 238 (535)
..++++.++.|++. |++.+-||+-. ..+. .-+..+ ..+.+.++|+.++++|..+.
T Consensus 230 ~~i~~ell~~l~~~~~g~~~l~igvQS--gs~~vLk~m~R~~---~~~~~~~~v~~lr~~~~~i~ 289 (440)
T PRK14334 230 MNFTDDVIAAMAETPAVCEYIHLPVQS--GSDRVLRRMAREY---RREKYLERIAEIREALPDVV 289 (440)
T ss_pred ccCCHHHHHHHHhcCcCCCeEEecccc--CCHHHHHHhCCCC---CHHHHHHHHHHHHHhCCCcE
Confidence 45789999999985 58988888742 1110 001123 45667788999999975543
No 269
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=30.71 E-value=1.5e+02 Score=29.52 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=36.4
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
+.+-.+...+.+|.++|=|-+.. . .-+.|.++++.|.+.||.+++.+|.
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~-----------L---~~~~l~~l~~~a~~lGle~lVEVh~ 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI-----------L---SDDQLEELLELAHSLGLEALVEVHN 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG-----------S---GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCHHHHHHHHHcCCCEeehhHHh-----------C---CHHHHHHHHHHHHHcCCCeEEEECC
Confidence 45677777888999998874421 2 2356889999999999999999996
No 270
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=30.50 E-value=7.1e+02 Score=26.77 Aligned_cols=125 Identities=18% Similarity=0.322 Sum_probs=66.1
Q ss_pred EEEeCCccccccC-----CCC----CCCCc------cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCC
Q 046395 196 AVRIPVGWWIAYD-----PKP----PKPFV------GGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGF 260 (535)
Q Consensus 196 ~VRipv~~w~~~~-----p~~----~~~~~------~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~ 260 (535)
++|+.|.||+-+. |-. ..||+ +....++|.+++...+.|+.- +++|-.--. ..+.
T Consensus 38 hlrFa~~~Wht~~~~G~DpFG~~T~~rpw~~~~d~~~~a~~k~daaFef~~kLg~~~-~~FHD~D~~---------peg~ 107 (434)
T TIGR02630 38 HLRFAVAYWHTFCGDGGDPFGDGTADRPWDGGTDPMDKAKAKVDAAFEFFEKLGVPY-YCFHDRDIA---------PEGA 107 (434)
T ss_pred hhceeeeecccCCCCCCCCCCCccCCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCe-eccCccccC---------CCCC
Confidence 3688999985322 111 12342 224567788999999999865 467742100 0010
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec---CCCCC----CCChHHHHHH----HHHHHHHHHhcCCCcEEEE
Q 046395 261 QEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN---EPKAP----DLKLDSLKTY----YKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 261 ~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N---EP~~~----~~~~~~~~~~----~~~~~~aIR~~~p~~~ii~ 329 (535)
.. .+..+...++.+.+.+.-+...-.+-|.+.| .|.-- ..+-..++.+ .++++++-++.+.+.+|++
T Consensus 108 ~~--~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~TnPd~~Vra~A~~qvk~alD~~~eLGgenyV~W 185 (434)
T TIGR02630 108 SL--RETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMHGAATSPDADVFAYAAAQVKKALEVTKKLGGENYVFW 185 (434)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 00 1333333444444444433333334465544 34321 1222344444 4566778899999999999
Q ss_pred cCC
Q 046395 330 SNR 332 (535)
Q Consensus 330 ~~~ 332 (535)
+++
T Consensus 186 gGR 188 (434)
T TIGR02630 186 GGR 188 (434)
T ss_pred CCc
Confidence 874
No 271
>PRK10673 acyl-CoA esterase; Provisional
Probab=30.33 E-value=1.3e+02 Score=28.72 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 046395 278 LASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLG 334 (535)
Q Consensus 278 la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g 334 (535)
++.++.++-.|+++++-.==.........+..+.+++...|.+.+...+++++..+|
T Consensus 35 ~~~~l~~~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~G 91 (255)
T PRK10673 35 LARDLVNDHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDALQIEKATFIGHSMG 91 (255)
T ss_pred HHHHHhhCCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEECHH
Confidence 333333334788888853100001112346677788888888888777788887776
No 272
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=30.26 E-value=76 Score=27.49 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCEEEEecCCCCCCCC
Q 046395 223 LDNAFRWAQKYGMKVIVDLHALRVSQN 249 (535)
Q Consensus 223 ld~~i~~a~~~Gi~VIldlH~~pg~~n 249 (535)
++++++...++||.++||+-..|.|++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~ 28 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRK 28 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCC
Confidence 678999999999999999998887663
No 273
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=30.18 E-value=68 Score=32.16 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEe
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVD 240 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIld 240 (535)
+.+++.+++.|++.||+.++--.. .....+. -.+..++.+.++++.|+++|+.|.+.
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~-~~~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGT-TLEENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 568889999999999996642110 1111111 12347889999999999999999884
No 274
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=29.49 E-value=1.4e+02 Score=27.19 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=39.6
Q ss_pred CCCceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEEee-CCcEEEeec
Q 046395 15 LDGTQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFRLS-NKQFIGLEN 80 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~~~-~~~~v~~~~ 80 (535)
+++..||||....++=|.| -+.|...+.+-+.. ..=.-|+|-..+.+.+++|.. +++=+...+
T Consensus 49 ~~~g~Vqf~n~~~~~CL~~-~~~G~~~~~~C~~~--~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~ 112 (150)
T PF03498_consen 49 FPFGYVQFVNPKTGTCLAA-YGNGVFHYKSCDQD--NLEQVFSIIPTTTGAVQIKSLSTGECLQTFN 112 (150)
T ss_dssp STTCEEEEEETTTSEEEEE-ETTCEEEE--TTTC--HGHH-EEEEEBTTS-EEEEETTT--EEEE-S
T ss_pred CCCCEEEEEcCCCCcceee-cCCCeEeecccCCC--ChhceEEEEEcCCCcEEEEecCCCceEEecC
Confidence 3568999999999994445 24556666654433 233458999999999999965 666555554
No 275
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=29.27 E-value=1.6e+02 Score=30.21 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc--cchHHHHHHHHHHHHHcCCE-EEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV--GGSLQALDNAFRWAQKYGMK-VIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~--~~~l~~ld~~i~~a~~~Gi~-VIldlH~ 243 (535)
++.++.|++.|++.|.|.+.- .++.....+. .+.++.+-+.|+.|.+.|+. |-+....
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~---~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDS---LDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEeccc---CCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 467889999999999987743 1221111121 23688888999999999997 7776543
No 276
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=29.23 E-value=5.8e+02 Score=25.37 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCC---EEEEecCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGM---KVIVDLHALRVSQNGSPHSGSRDG 259 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi---~VIldlH~~pg~~ng~~~sg~~~~ 259 (535)
++-+..+++.|+-.|=++..- ...|. -.++.++.+.+.++.|.++|| .+|+|---.|.+.+
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~--~g~P~----t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~---------- 169 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDD--TGIPK----DAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAA---------- 169 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCC--CCCCC----CHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC----------
Confidence 456778899999999776532 11111 123468889999999999999 89998765432111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 046395 260 FQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPK 298 (535)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~ 298 (535)
....-...+.++.+.+.|.+.|.++| +-|=-.
T Consensus 170 -----~~~~~~~l~~i~~l~~~~pg~p~l~G--~Sn~Sf 201 (261)
T PRK07535 170 -----QDAGPEVLETIRRIKELYPKVHTTCG--LSNISF 201 (261)
T ss_pred -----hHHHHHHHHHHHHHHHhCCCCCEEEE--eCCCcc
Confidence 12334456777777777767776654 444433
No 277
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.19 E-value=1.7e+02 Score=29.07 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCCEEEeCCccccccCCC-CCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIAYDPK-PPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~~~p~-~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
+..+.++++|++.+|=... +|. .+..|.+-.++.|+.+.+.|++.||.++-+.|.
T Consensus 33 ~~a~~~~~~g~~~~r~g~~-----kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGAY-----KPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred HHHHHHHHcCCCEEEeccc-----CCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 4444589999999998542 232 112244446788999999999999999999996
No 278
>PLN02449 ferrochelatase
Probab=28.93 E-value=8.1e+02 Score=26.91 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=81.9
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEe-CCccc-cc-------------c--CC---CCC----CCC--ccchHHHHHHHHH
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRI-PVGWW-IA-------------Y--DP---KPP----KPF--VGGSLQALDNAFR 228 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRi-pv~~w-~~-------------~--~p---~~~----~~~--~~~~l~~ld~~i~ 228 (535)
.+|+.++ ++-++.|++.|++.|-+ |+.-. .. . .+ ... ..| .+++++.+-+.|.
T Consensus 187 RY~~P~i-edal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~I~ 265 (485)
T PLN02449 187 RYWHPFT-EEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYVKAMADLIK 265 (485)
T ss_pred hcCCCCH-HHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcccccCCeeEEeccccCChHHHHHHHHHHH
Confidence 4676664 88999999999998775 44210 00 0 00 000 001 2345555555554
Q ss_pred HHH-Hc----CCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC----CCcEEEEEeecCCCC
Q 046395 229 WAQ-KY----GMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYAD----HPSLVAIELMNEPKA 299 (535)
Q Consensus 229 ~a~-~~----Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~----~p~V~~~el~NEP~~ 299 (535)
.+. +. ...+++..|+.|-+.-. ..| +.|.++..+..+.|+++.+. .+..++|+----|.
T Consensus 266 ~~l~~~~~~~~~~LlFSAHGlP~~~v~------~~G-----DpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~- 333 (485)
T PLN02449 266 KELAKFSDPEEVHIFFSAHGVPVSYVE------EAG-----DPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPV- 333 (485)
T ss_pred HHHHhccCcCCcEEEEecCCChhhhhh------hcC-----CChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCC-
Confidence 332 22 37899999998853210 001 24678888888888888754 44667777621221
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 046395 300 PDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLG 334 (535)
Q Consensus 300 ~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g 334 (535)
+.++.+.++++..+.+.+-++++++.-++-
T Consensus 334 -----eWL~P~t~d~L~~L~~~Gvk~VlvvPigFv 363 (485)
T PLN02449 334 -----EWLKPYTDETIVELGKKGVKSLLAVPISFV 363 (485)
T ss_pred -----CCCCCCHHHHHHHHHHcCCCeEEEECCccc
Confidence 234556666666666666677777765553
No 279
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=28.61 E-value=1.6e+02 Score=29.00 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
++-++.++++||++|=|.-+.- .. ..+...++|+.+.++|++|+-.+.-
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~---------~i---~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSM---------EI---SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCcc---------CC---CHHHHHHHHHHHHhCCCeEeccccc
Confidence 7788899999999999966531 12 3466778999999999999987764
No 280
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.19 E-value=1.5e+02 Score=27.86 Aligned_cols=44 Identities=23% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 185 DFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 185 D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
+++.++++|.+.|=++... .-..+.++++.|+++|++++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~---------------~~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA---------------DDATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC---------------CHHHHHHHHHHHHHcCCEEEEEecC
Confidence 6888899999998875421 1134678999999999999999875
No 281
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=28.15 E-value=1.3e+02 Score=30.29 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=46.7
Q ss_pred HhHHhhhCccchHHHHHHHHHcCCCEEEeCCccc-cccCCC----C-------CCCCccchHHHHHHHHHHHHHcCCEEE
Q 046395 171 KLMRDHWKSYITEEDFKFMSQNGLNAVRIPVGWW-IAYDPK----P-------PKPFVGGSLQALDNAFRWAQKYGMKVI 238 (535)
Q Consensus 171 ~~~~~hw~~~ite~D~~~ik~~G~N~VRipv~~w-~~~~p~----~-------~~~~~~~~l~~ld~~i~~a~~~Gi~VI 238 (535)
..+.+.|..++..+....++.-|.=++++.-+.. ..++.. . ......+.+++|++.++.+++.+.+|+
T Consensus 138 ~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v~ 217 (296)
T cd00842 138 DALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKVW 217 (296)
T ss_pred HHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 3455667777766666666666654444211111 011110 0 000124589999999999999999999
Q ss_pred EecCCCCCC
Q 046395 239 VDLHALRVS 247 (535)
Q Consensus 239 ldlH~~pg~ 247 (535)
|-.|..|+.
T Consensus 218 I~~HiPp~~ 226 (296)
T cd00842 218 IIGHIPPGV 226 (296)
T ss_pred EEeccCCCC
Confidence 999987653
No 282
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=27.87 E-value=88 Score=31.77 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEeCCcccccc--CCCCCCCC---cc--chHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAY--DPKPPKPF---VG--GSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~--~p~~~~~~---~~--~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+-|++||+.|+|++=+-+--.... -|.. .++ .. .-+..+..+|+.|++.|||+|--.
T Consensus 80 de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~-d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 80 DELFKLIKDNNINAFVIDVKDDYGELTYPSS-DEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCccEecccc-chhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 6889999999999998855211000 0000 011 11 236677889999999999998543
No 283
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.21 E-value=75 Score=31.59 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALR 245 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~p 245 (535)
+=+.+.+|+.|.+.+.+-+-|. .+.++ .++.-+++++++...|.+.||-.+|..-.++
T Consensus 114 ~isa~riK~~G~~avK~Lvy~~----~D~~e-~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 114 KISAKRIKEDGGDAVKFLVYYR----SDEDE-INEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred hhCHHHHHHhcccceEEEEEEc----CCchH-HhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 3456789999999999987652 22222 5667899999999999999999999887754
No 284
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=27.18 E-value=1.2e+02 Score=27.99 Aligned_cols=50 Identities=28% Similarity=0.579 Sum_probs=28.4
Q ss_pred CCCceeEEEEee-----cCcEEEEecC---CCceEEeccCCCCCCCCceeEEEEecC-----CeEEEE
Q 046395 15 LDGTQVQLISTK-----LKKYLTAENG---SETILMANHNSSSTSSWQTFRLWRINE-----TFYNFR 69 (535)
Q Consensus 15 ~~~~~~~~~~~~-----~~~~~~a~~~---g~~~~~anr~~~~~~~we~f~~~~~~~-----~~~~~~ 69 (535)
..|+.|.|-.-. .=|||++|+| +|..++| ++ +.|+.|.++=+++ ..|..|
T Consensus 4 ~~Gs~VsLFNRirSQTVsTrYL~v~~~~~~~g~~f~a---s~--~~W~~F~I~lvd~~~~~~~~~~~~ 66 (158)
T PF09270_consen 4 SSGSTVSLFNRIRSQTVSTRYLHVENGASGHGPRFVA---SS--TQWDPFTIHLVDDPRSNAEPFDVR 66 (158)
T ss_dssp BTTCEEEEEEECTTECCCEEEEEEETT------EEEE---ES--S----EEEEEE-TT--SSSCEEEE
T ss_pred cCCCEEEeEcccccccccceeeecCCCcccceeeeee---cc--CcccceEEEEecCCccccCCCCCC
Confidence 357777775543 3489999966 5666666 23 7899999999943 445554
No 285
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.97 E-value=1.4e+02 Score=29.82 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=39.3
Q ss_pred hHHHHHHHHHcC----CCEEEeCCcccc-ccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 182 TEEDFKFMSQNG----LNAVRIPVGWWI-AYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 182 te~D~~~ik~~G----~N~VRipv~~w~-~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.+++++...+.| +..||+.++... .....-+. -.+..++.+.++++.|+++|++|.+..
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~-~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKK-TREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 478999998888 999999653210 00000000 112367888899999999999988643
No 286
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=26.60 E-value=6e+02 Score=24.69 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 046395 219 SLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYA 283 (535)
Q Consensus 219 ~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~ 283 (535)
.++.....+..+++.|++|++.+.....+. ++ ...-.++.++.|++-+..+..+|+
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~-~~--------~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGA-GF--------ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCC-Cc--------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 456677888899999999999887532110 00 000013556667666666667774
No 287
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.51 E-value=6.1e+02 Score=26.83 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC--CcEEEEEee-
Q 046395 218 GSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADH--PSLVAIELM- 294 (535)
Q Consensus 218 ~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~--p~V~~~el~- 294 (535)
..++.+.+.|+.|++.|-..|+-+.+..+ ...... . . ..+..+.+++.++.+++.-++. .-.+++|-+
T Consensus 112 ~ai~~~kraId~A~eLGa~~v~v~~G~~g----~~~~~~---~-d-~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p 182 (382)
T TIGR02631 112 YALRKVLRNMDLGAELGAETYVVWGGREG----AEYDGA---K-D-VRAALDRMREALNLLAAYAEDQGYGLRFALEPKP 182 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEccCCCC----CcCccc---c-C-HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 46889999999999999987643322111 110000 0 0 0345677788888888755543 234667776
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 046395 295 NEPKAPDLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 295 NEP~~~~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
|||... .+-.-..++...|++++.
T Consensus 183 ~~~~~~-----~ll~T~~~al~li~~v~~ 206 (382)
T TIGR02631 183 NEPRGD-----ILLPTVGHALAFIETLER 206 (382)
T ss_pred CCCCcc-----eecCCHHHHHHHHHHcCC
Confidence 666531 223334566677777774
No 288
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=26.46 E-value=79 Score=31.93 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=43.7
Q ss_pred chHHHHHHHHHcCCCEEEeCCcccc-ccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWI-AYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~-~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
.+++|++...+.|+..|-+.++--. +....-+. -.+..++.+.++++.|+++|++|.+.+-
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~-t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKM-TREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCc-CHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4689999999999999998664311 11111111 1345899999999999999999988773
No 289
>PLN02389 biotin synthase
Probab=25.70 E-value=6.3e+02 Score=26.68 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCC-ccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPF-VGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~-~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
.++++.++.||++|++.+-+-+. . .+.-.... ....++..-+.++.|++.||.|...+ ..|
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~Le--T--s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~--IiG------------ 236 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLD--T--SREYYPNVITTRSYDDRLETLEAVREAGISVCSGG--IIG------------ 236 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeec--C--ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEE--EEC------------
Confidence 46799999999999998765332 1 01000001 12366777789999999999875432 211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec-CCCCC--CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 259 GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN-EPKAP--DLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N-EP~~~--~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
.. +..+..++.+..+.+ +..+|.-+.+..++ .|..+ ...... ..-+-+++...|-+.|+..+-+..+|
T Consensus 237 -lg----Et~edrv~~l~~Lr~-L~~~~~~v~l~~l~P~~GTpL~~~~~~s-~~e~lr~iAi~Rl~lP~~~i~i~~gr 307 (379)
T PLN02389 237 -LG----EAEEDRVGLLHTLAT-LPEHPESVPINALVAVKGTPLEDQKPVE-IWEMVRMIATARIVMPKAMVRLSAGR 307 (379)
T ss_pred -CC----CCHHHHHHHHHHHHh-cccCCcEEecccceecCCCcCCCCCCCC-HHHHHHHHHHHHHHCCCccccccccc
Confidence 10 233444444444443 33233322232221 11111 000000 11234667788888998887776655
No 290
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.62 E-value=4.1e+02 Score=26.56 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
++-++.+++.|++.|=+|- .|+ +..+++++.|+++||..|+=+--.
T Consensus 109 e~F~~~~~~aGvdgviipD-----------LP~-----ee~~~~~~~~~~~gi~~I~lv~Pt------------------ 154 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPD-----------LPY-----EESDYLISVCNLYNIELILLIAPT------------------ 154 (263)
T ss_pred HHHHHHHHHcCCeEEEecC-----------CCH-----HHHHHHHHHHHHcCCCEEEEECCC------------------
Confidence 5567777888888887742 222 557788889999999888744311
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC--CChhhh
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLG--GEWSEL 340 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g--~~~~~~ 340 (535)
.. .+.++.+++.=.+ .+ |-+-+ |...+.. ..+..-..+.++.+|++. +.+|.++-+.. .+...+
T Consensus 155 ---T~----~eri~~i~~~a~g---FI-Y~vS~-~GvTG~~-~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~ 220 (263)
T CHL00200 155 ---SS----KSRIQKIARAAPG---CI-YLVST-TGVTGLK-TELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQI 220 (263)
T ss_pred ---CC----HHHHHHHHHhCCC---cE-EEEcC-CCCCCCC-ccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHH
Confidence 01 1223333332222 22 33332 3333332 344555677777888854 55666775544 334444
Q ss_pred hcccCCCCcEEEEEee
Q 046395 341 LSFASNLSRVVIDVHF 356 (535)
Q Consensus 341 ~~~~~~~~n~v~d~H~ 356 (535)
... +.+.+|+....
T Consensus 221 ~~~--GADGvVVGSal 234 (263)
T CHL00200 221 KGW--NINGIVIGSAC 234 (263)
T ss_pred Hhc--CCCEEEECHHH
Confidence 332 24556655444
No 291
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=25.34 E-value=5e+02 Score=23.29 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=51.0
Q ss_pred CCceeEEEEeecCcEEEEecCCCceEEeccCCC-CC-CCCceeEEEEecCCeEEEEe-eCCcEEEeecCCCe----EEEe
Q 046395 16 DGTQVQLISTKLKKYLTAENGSETILMANHNSS-ST-SSWQTFRLWRINETFYNFRL-SNKQFIGLENQGNK----LVAV 88 (535)
Q Consensus 16 ~~~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~-~~-~~we~f~~~~~~~~~~~~~~-~~~~~v~~~~~~~~----~~a~ 88 (535)
|| .|.+||.-+|||--+- .-=++|.-+.+ +. ++=--|+-..++.+++.||. -++.|+.-..-++. |.|-
T Consensus 50 dg-~V~ik~~~~nKfWr~s---~~WI~a~s~d~~e~~sscTLF~Pv~~d~~~i~lr~vq~~~~~~r~t~~~~~~~CL~A~ 125 (139)
T smart00791 50 NG-LVHIKSNYTNKFWRLS---HYWITADANDPDENKSACTLFRPLYVEMKKIRLLNVQLGHYTKRYTVGKSFVSCLNAA 125 (139)
T ss_pred CC-cEEEEecCCCceEccC---CCEEEecCCCCccCCCcccEEeEEeccCceEEEEEecCCceEEeecCCCCcccceeec
Confidence 44 8999999999998655 44566655554 22 23334888888899999995 49999966532333 6666
Q ss_pred ccCCCC
Q 046395 89 SATEKF 94 (535)
Q Consensus 89 ~~~~~~ 94 (535)
..+...
T Consensus 126 ~~~i~~ 131 (139)
T smart00791 126 SSQIDT 131 (139)
T ss_pred cccccc
Confidence 555543
No 292
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=25.33 E-value=96 Score=25.77 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=48.6
Q ss_pred hHHHHHHH---HHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec
Q 046395 219 SLQALDNA---FRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN 295 (535)
Q Consensus 219 ~l~~ld~~---i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N 295 (535)
+++.|.+. ++..++.+++|++|.++-.+ ..++..+.++++- .+ .++-.
T Consensus 3 Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~-------------------------~~~~~~ll~~lg~--~~--~~~n~ 53 (104)
T PF02879_consen 3 YIESLLSFIDILEAIKKSGLKIVVDCMNGAG-------------------------SDILPRLLERLGC--DV--IELNC 53 (104)
T ss_dssp HHHHHHHTSCHHHHHHHTTCEEEEE-TTSTT-------------------------HHHHHHHHHHTTC--EE--EEESS
T ss_pred HHHHHhhhccchhhcccCCCEEEEECCCCHH-------------------------HHHHHHHHHHcCC--cE--EEEec
Confidence 44455554 44678999999999886321 2456677777655 33 34555
Q ss_pred CCCCC--C-CChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 296 EPKAP--D-LKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 296 EP~~~--~-~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
+|... . ..+.-....++.+.+.+++...+..+.+.
T Consensus 54 ~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~D 91 (104)
T PF02879_consen 54 DPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFD 91 (104)
T ss_dssp S-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-
T ss_pred ccccccccccccccccchhHHHHHHhhccCceEEEEEC
Confidence 55542 1 11111126778888889998887766654
No 293
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=25.29 E-value=66 Score=31.98 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=38.1
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
|.+-.+...+.+|.++|=|.+.. . .-+.|.++++.|.++||.|++..|.
T Consensus 117 iD~yQI~~Ar~~GADavLLI~~~-----------L---~~~~l~el~~~A~~LGm~~LVEVh~ 165 (254)
T COG0134 117 IDPYQIYEARAAGADAVLLIVAA-----------L---DDEQLEELVDRAHELGMEVLVEVHN 165 (254)
T ss_pred CCHHHHHHHHHcCcccHHHHHHh-----------c---CHHHHHHHHHHHHHcCCeeEEEECC
Confidence 45667777788899998775532 1 1256889999999999999999996
No 294
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.26 E-value=2.8e+02 Score=28.70 Aligned_cols=131 Identities=14% Similarity=0.228 Sum_probs=77.6
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCC-----C-CCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKP-----P-KPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPH 253 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~-----~-~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~ 253 (535)
-++++-++.|.++|+.-+-+++.. ++|.- | .-| .++.+.++.+++...||-|+|.--..||-.
T Consensus 201 ~L~~~lv~eLeeAGLdRiNlSv~a---LDpk~Ak~L~G~~dY---dv~kvle~aE~i~~a~idvlIaPv~lPG~N----- 269 (414)
T COG2100 201 LLSKKLVDELEEAGLDRINLSVDA---LDPKLAKMLAGRKDY---DVKKVLEVAEYIANAGIDVLIAPVWLPGVN----- 269 (414)
T ss_pred eccHHHHHHHHHhCCceEEeeccc---CCHHHHHHhcCcccc---CHHHHHHHHHHHHhCCCCEEEeeeecCCcC-----
Confidence 467899999999999999998853 45431 1 124 688899999999999999999776666521
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC----CChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 046395 254 SGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPD----LKLDSLKTYYKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 254 sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~----~~~~~~~~~~~~~~~aIR~~~p~~~ii~ 329 (535)
+.-...++.+...+-. =+..| .++++.+=.-.... ...=.|++||..+-+.=.+..-.-+|+-
T Consensus 270 -----------D~E~~~iIe~A~~iGa-Gkk~p-~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~kpLilk 336 (414)
T COG2100 270 -----------DDEMPKIIEWAREIGA-GKKWP-PLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVKPLILK 336 (414)
T ss_pred -----------hHHHHHHHHHHHHhCC-CCCCC-CcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCCccccC
Confidence 1233444444444432 12233 33466553322110 1122467777766666556554444332
Q ss_pred cCCCC
Q 046395 330 SNRLG 334 (535)
Q Consensus 330 ~~~~g 334 (535)
.+.+|
T Consensus 337 P~~fG 341 (414)
T COG2100 337 PGEFG 341 (414)
T ss_pred hhhcC
Confidence 33454
No 295
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=25.18 E-value=4.7e+02 Score=22.90 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=54.2
Q ss_pred ceeEEEEeecCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeEEEE-eeCCcEEEeecCCCeEEEeccCCCCCC
Q 046395 18 TQVQLISTKLKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFYNFR-LSNKQFIGLENQGNKLVAVSATEKFPE 96 (535)
Q Consensus 18 ~~~~~~~~~~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~a~~~~~~~~e 96 (535)
..+||= +.+|.||---.-| .|-.-++.. +..-.|+++-++.+.+.+| +..+.|+|.+. .|.|-+... +..-=
T Consensus 3 R~~~Ly-~~~~~~L~I~~~G--~V~Gt~~~~--~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~-~G~ly~s~~-~~~dC 75 (126)
T smart00442 3 RLRQLY-CRNGQHLQILPDG--TVDGTRDES--SSFTILEIIAVAVGVVAIKGVASCRYLCMNK-CGKLYGSKN-FTEDC 75 (126)
T ss_pred eEEEEE-eCCCeEEEEcCCc--eEecccCCC--CcceEEEEEeccCCEEEEEEcccceEEEECC-CCCEEEccc-CCCCc
Confidence 456665 5556777654222 555666666 7788889999998999999 56999999998 777888776 55555
Q ss_pred ceE
Q 046395 97 PFQ 99 (535)
Q Consensus 97 ~f~ 99 (535)
.|.
T Consensus 76 ~F~ 78 (126)
T smart00442 76 VFR 78 (126)
T ss_pred EEE
Confidence 563
No 296
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=25.07 E-value=4.6e+02 Score=27.15 Aligned_cols=104 Identities=20% Similarity=0.270 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 046395 219 SLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPK 298 (535)
Q Consensus 219 ~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~ 298 (535)
...+.|.+++.+.+.|+.- -++|...-. ..|... .++...+..+...++++-++...-+-|.+.|=-.
T Consensus 80 Ak~kad~aFEff~kL~vpy-yCFHD~Dva---------PeG~~l--~E~~~nl~~ivd~~~~kq~~sgvKLLWgTAN~Fs 147 (438)
T COG2115 80 AKRKADVAFEFFEKLGVPY-YCFHDVDVA---------PEGASL--KEYYNNLDEIVDVLAGKQKESGVKLLWGTANLFT 147 (438)
T ss_pred HHHHHHHHHHHHHHhCCCe-EeecccccC---------CCcccH--HHHHHHHHHHHHHHHHHHHhhCceeeeccccccc
Confidence 4566788999999999853 345642110 011110 3455555666666666655544445577776432
Q ss_pred CC-------CCChHHHHHH----HHHHHHHHHhcCCCcEEEEcCCCC
Q 046395 299 AP-------DLKLDSLKTY----YKAGYDTVRKYSSSAYVILSNRLG 334 (535)
Q Consensus 299 ~~-------~~~~~~~~~~----~~~~~~aIR~~~p~~~ii~~~~~g 334 (535)
.+ ..+...+-.| .+.++++-++++...+|+++++=|
T Consensus 148 npRym~GaATnp~~dVFa~aAaqVk~~~~~tk~LggENYVlWGGREG 194 (438)
T COG2115 148 NPRYMAGAATNPDPDVFAYAAAQVKTAMEATKKLGGENYVLWGGREG 194 (438)
T ss_pred CccccccccCCCChhHHHHHHHHHHHHHHHHHhcCCcceEEecCccc
Confidence 21 1122333333 345668888999999999998643
No 297
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=24.77 E-value=5.6e+02 Score=23.67 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQEW 263 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W 263 (535)
-|++.+|+.|+..|=|-.. +|..|. =..+..-++.|++.||.+=+-....+ .
T Consensus 12 id~~~~k~~gi~fviiKat--------eG~~y~---D~~~~~~~~~a~~aGl~~G~Yhy~~~--------~--------- 63 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT--------EGTTFV---DSYFNENYNGAKAAGLKVGFYHFLVG--------T--------- 63 (184)
T ss_pred CCHHHHHhCCCeEEEEEec--------CCCccc---CHhHHHHHHHHHHCCCceEEEEEeeC--------C---------
Confidence 5788999999887765332 222121 13466778899999997643221211 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 264 SDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 264 ~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
....+++..+++.+..+=.+-|-++-+|-.+. .+.....++..+.++.|++.....+++..
T Consensus 64 -~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~-----~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 124 (184)
T cd06525 64 -SNPEEQAENFYNTIKGKKMDLKPALDVEVNFG-----LSKDELNDYVLRFIEEFEKLSGLKVGIYT 124 (184)
T ss_pred -CCHHHHHHHHHHhccccCCCCCeEEEEecCCC-----CCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 13456677777776543223344444444332 24566778888889999887333444443
No 298
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=24.71 E-value=38 Score=31.94 Aligned_cols=18 Identities=6% Similarity=-0.079 Sum_probs=15.9
Q ss_pred CCCCceEEEecCCccCCcc
Q 046395 506 VRSKREDGIKNLKEFGDDY 524 (535)
Q Consensus 506 ~p~~~~~~~k~v~~~~~~~ 524 (535)
.||++++++|||| .||+|
T Consensus 81 e~g~~a~~~k~Vt-~ne~f 98 (185)
T PRK04424 81 ELGRSAISILEIT-EEMVF 98 (185)
T ss_pred cCCcEEEEEEecC-hhhcc
Confidence 4788899999999 99975
No 299
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=24.51 E-value=58 Score=28.98 Aligned_cols=34 Identities=3% Similarity=-0.062 Sum_probs=23.8
Q ss_pred CcccHHHHHhhCCCCCCCCceEEEecCCccCCccccCCCC
Q 046395 491 TVMHVNQIRGILPSRVRSKREDGIKNLKEFGDDYYRPSTG 530 (535)
Q Consensus 491 ~~~~~~~i~~~lphr~p~~~~~~~k~v~~~~~~~f~~~~~ 530 (535)
+.+-+++|.++= |+ ++++.|+|+ .|++||.+..|
T Consensus 12 PmllvD~v~~~~----~~-~~~~~~~v~-~~~~f~~~~~~ 45 (138)
T cd01289 12 PMCLLDRVISWD----DD-SIHCRATVH-PDPLFPLRAHG 45 (138)
T ss_pred CeEEEEEEEEEc----CC-EEEEEEEeC-CCCcCccccCC
Confidence 334445555442 44 689999999 99999987654
No 300
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=24.43 E-value=1e+02 Score=31.98 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHHHHHHcC--CCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCC
Q 046395 184 EDFKFMSQNG--LNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQ 261 (535)
Q Consensus 184 ~D~~~ik~~G--~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~ 261 (535)
+-++.+++.+ +.+|=+-+.|+.. ...-.+++..+...+++++.+++.|+++++.+|-.-. .+....+ ....+
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~~~---~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~--~g~~~~~-~~~~p 101 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQDN---YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS--YGGGLGS-PGLYP 101 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchhcC---CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee--cCccCCC-Cceee
Confidence 3444455554 4555555555421 1111245556666788999999999999998873311 1111111 11122
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 046395 262 EWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKA 299 (535)
Q Consensus 262 ~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~ 299 (535)
.+. ...+.++|..+.+.+.+..--..|-=+|||..
T Consensus 102 Dft---np~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~ 136 (332)
T cd06601 102 DLG---RPDVREWWGNQYKYLFDIGLEFVWQDMTTPAI 136 (332)
T ss_pred CCC---CHHHHHHHHHHHHHHHhCCCceeecCCCCccc
Confidence 222 22333455555554433322234778999974
No 301
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=24.35 E-value=1.5e+02 Score=31.07 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEE
Q 046395 305 DSLKTYYKAGYDTVRKYSSSAYVIL 329 (535)
Q Consensus 305 ~~~~~~~~~~~~aIR~~~p~~~ii~ 329 (535)
+.+..|+....++||+++|+++|..
T Consensus 209 ~~~~~~~~~~~~~ir~~~p~~~vt~ 233 (374)
T PF02449_consen 209 DRVAEFFRWQADIIREYDPDHPVTT 233 (374)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-EEE-
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEe
Confidence 4567788889999999999988663
No 302
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.25 E-value=7.2e+02 Score=24.74 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
|--...|++.|++.|=|.=+ + ...|-.+.=+.+.+-+..|.++||.+||+.--
T Consensus 78 eiS~~mL~d~G~~~viiGHS-----E---RR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGE 130 (251)
T COG0149 78 EISAEMLKDLGAKYVLIGHS-----E---RRLYFGETDELIAKKVKAAKEAGLTPILCVGE 130 (251)
T ss_pred cCCHHHHHHcCCCEEEECcc-----c---cccccccchHHHHHHHHHHHHCCCeEEEEcCC
Confidence 34456789999999977432 1 11122233355668889999999999998764
No 303
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=24.21 E-value=1.9e+02 Score=28.70 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=37.5
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
+.+..+...+.+|.++|=+-+.- . .-+.|.++++.|.+.||.++|..|.
T Consensus 112 id~~QI~ea~~~GADavLLI~~~-----------L---~~~~l~~l~~~a~~lGle~LVEVh~ 160 (247)
T PRK13957 112 LDEIQIREARAFGASAILLIVRI-----------L---TPSQIKSFLKHASSLGMDVLVEVHT 160 (247)
T ss_pred CCHHHHHHHHHcCCCEEEeEHhh-----------C---CHHHHHHHHHHHHHcCCceEEEECC
Confidence 45677777788999998553311 1 1247889999999999999999996
No 304
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=24.12 E-value=7.1e+02 Score=27.19 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=70.3
Q ss_pred chHHHHHHHHHcCCCEEEeCCccc-----cccCCCCCCCCccchHHHHHHHHHHHHHcCCE-EEEecCCCCCCCCCCCCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWW-----IAYDPKPPKPFVGGSLQALDNAFRWAQKYGMK-VIVDLHALRVSQNGSPHS 254 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w-----~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~-VIldlH~~pg~~ng~~~s 254 (535)
++.++++.||++|++.+-+-.--. ..+.|. .+ ...+++=-+.++.|.+.||. |=+..
T Consensus 178 lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~--g~--k~~y~~Rl~t~~rA~~aGi~~Vg~G~------------- 240 (469)
T PRK09613 178 TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPS--GP--KSDYDWRLTAMDRAMEAGIDDVGIGV------------- 240 (469)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCC--CC--CCCHHHHHHHHHHHHHcCCCeeCeEE-------------
Confidence 678999999999999876633110 111121 11 12344444578888888886 43322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-CC-Ch-H-HHHHHHHHHHHHHHhcCCCcEEEEc
Q 046395 255 GSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP-DL-KL-D-SLKTYYKAGYDTVRKYSSSAYVILS 330 (535)
Q Consensus 255 g~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~-~~-~~-~-~~~~~~~~~~~aIR~~~p~~~ii~~ 330 (535)
.-|-..|..+.. .....++.|-++|+-.|..+.+-.++ |... +. .. . .=..-+.+++.++|=..|..-|+++
T Consensus 241 --L~GLge~~~E~~-~l~~hl~~L~~~~gvgp~tIsvprl~-P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lS 316 (469)
T PRK09613 241 --LFGLYDYKFEVL-GLLMHAEHLEERFGVGPHTISVPRLR-PADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILS 316 (469)
T ss_pred --EEcCCCCHHHHH-HHHHHHHHHHHhhCCCCcccccccee-cCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceee
Confidence 112222211222 22455667778885445433333222 2211 01 00 0 1123456788999999999988887
Q ss_pred CC
Q 046395 331 NR 332 (535)
Q Consensus 331 ~~ 332 (535)
.+
T Consensus 317 tR 318 (469)
T PRK09613 317 TR 318 (469)
T ss_pred cC
Confidence 64
No 305
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.00 E-value=1.6e+02 Score=33.13 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=41.5
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.||+.-+.+.+++..++.|+..+|+.... ..++.+...++.++++|+.|...+
T Consensus 91 ~~ypd~vv~~~v~~A~~~Gvd~irif~~l--------------nd~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 91 RHYPDDVVEKFVEKAAENGIDIFRIFDAL--------------NDVRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred ccccchhhHHHHHHHHHCCCCEEEEEEec--------------ChHHHHHHHHHHHHHcCCEEEEEE
Confidence 35555667899999999999999995432 134678889999999999888666
No 306
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=23.78 E-value=1e+02 Score=32.07 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPF--VGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~--~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
-++++.++.|++.|++.|.|++.-- .+.-.... ..+.++.+-+.|+.++++|+.|.|.+
T Consensus 92 ll~~e~~~~L~~~g~~~v~iSldg~---~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~ 152 (358)
T TIGR02109 92 GLTEARLDALADAGLDHVQLSFQGV---DEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNF 152 (358)
T ss_pred cCCHHHHHHHHhCCCCEEEEeCcCC---CHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEE
Confidence 3678999999999999999988421 11100001 12467787888899999999877654
No 307
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=23.70 E-value=2e+02 Score=28.44 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=37.6
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
..+|++..++.|+..||+.+.. . ....+.++++.|+++|+.|.+.+-
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~---------s-----~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHC---------T-----EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEech---------h-----hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3689999999999999995532 0 235678899999999999988774
No 308
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.60 E-value=2.2e+02 Score=27.91 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
++-++.+++.|++.|=+|-- |+ +..+.++++++.|+++||++++-+|..
T Consensus 91 ~~~i~~~~~~Gadgvii~dl-----------p~--e~~~~~~~~~~~~~~~Gl~~~~~v~p~------------------ 139 (244)
T PRK13125 91 DNFLNMARDVGADGVLFPDL-----------LI--DYPDDLEKYVEIIKNKGLKPVFFTSPK------------------ 139 (244)
T ss_pred HHHHHHHHHcCCCEEEECCC-----------CC--CcHHHHHHHHHHHHHcCCCEEEEECCC------------------
Confidence 34467788899998888521 12 124568889999999999999998842
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCChhhhhc
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRLGGEWSELLS 342 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~g~~~~~~~~ 342 (535)
+..++. +.+++ .-+.++.. . =+|... . .+..-..+.++.+|+..++..|.++.+. .+...+..
T Consensus 140 ---T~~e~l----~~~~~---~~~~~l~m-s-v~~~~g-~---~~~~~~~~~i~~lr~~~~~~~i~v~gGI-~~~e~i~~ 202 (244)
T PRK13125 140 ---FPDLLI----HRLSK---LSPLFIYY-G-LRPATG-V---PLPVSVERNIKRVRNLVGNKYLVVGFGL-DSPEDARD 202 (244)
T ss_pred ---CCHHHH----HHHHH---hCCCEEEE-E-eCCCCC-C---CchHHHHHHHHHHHHhcCCCCEEEeCCc-CCHHHHHH
Confidence 112222 22222 12345533 3 344431 1 3555666677788887766566776654 34444443
Q ss_pred c-cCCCCcEEEEEeecC
Q 046395 343 F-ASNLSRVVIDVHFYN 358 (535)
Q Consensus 343 ~-~~~~~n~v~d~H~Y~ 358 (535)
. ..+.+.+++......
T Consensus 203 ~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 203 ALSAGADGVVVGTAFIE 219 (244)
T ss_pred HHHcCCCEEEECHHHHH
Confidence 2 234566666655443
No 309
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.59 E-value=1.4e+02 Score=28.90 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=38.1
Q ss_pred HHHHHH----HHHcCCCEEEeCCccccc-cCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKF----MSQNGLNAVRIPVGWWIA-YDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~----ik~~G~N~VRipv~~w~~-~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
+++++. +++.|+..||+.+.-... ..-.-+. -.+..++.+.++++.|+++|+.|.+.+-
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~-~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNK-SREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCS-HHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcC-CHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 455554 457999999997653110 0000000 1234688999999999999999977654
No 310
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=23.52 E-value=1.7e+02 Score=28.91 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 182 TEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
.++-++.++++||++|=|.-+.- .. ..+...++|+.|++.|++|+-.+..
T Consensus 86 ~~~yl~~~k~lGf~~IEiSdGti---------~l---~~~~r~~~I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISDGTI---------DL---PEEERLRLIRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES-
T ss_pred HHHHHHHHHHcCCCEEEecCCce---------eC---CHHHHHHHHHHHHHCCCEEeecccC
Confidence 38999999999999999966531 12 3466777899999999999998874
No 311
>PF01341 Glyco_hydro_6: Glycosyl hydrolases family 6; InterPro: IPR016288 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The 1,4-beta cellobiohydrolase family plays a central role in the recycling of plant biomass. The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: Endoglucanases, which cut internal beta-1,4-glucosidic bonds; Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing end of the cellulose polymer chain; and Beta-1,4-glucosidases, which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030245 cellulose catabolic process; PDB: 2BOF_X 2BOG_X 1TML_A 3RPT_A 2BOD_X 2BOE_X 1DYS_B 3VOI_A 3VOG_A 3VOJ_A ....
Probab=23.42 E-value=4e+02 Score=27.24 Aligned_cols=102 Identities=21% Similarity=0.141 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCC-CCCCCCChHHHHHHHHHHHHHHHH---hCCCCcEEEEEee
Q 046395 219 SLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSR-DGFQEWSDSDIQETVAIIDFLASR---YADHPSLVAIELM 294 (535)
Q Consensus 219 ~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~-~~~~~W~~~~~~~~~~~~~~la~r---y~~~p~V~~~el~ 294 (535)
.-..|+.++..|.+.|-.++|-++..|+- ++++.. .|. .....+.+.++++.|++- |++.+.|+.
T Consensus 45 ~~~~l~~~~~~a~~~~~~~vlVvY~lP~R----DC~a~~S~Ge---g~~~~~~Yk~wId~ia~~i~~~g~~~~vvI---- 113 (298)
T PF01341_consen 45 VRQYLRAAVAQAAAAGKTPVLVVYNLPNR----DCAAGASAGE---GADSLASYKEWIDPIAAGIKKYGDRRAVVI---- 113 (298)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEE---TTC----STTSSSTSSS---GGTHHHHHHHHHHHHHHHHHHTTTSEEEEE----
T ss_pred HHHHHHHHHHhhhccCCceEEEEeccCCC----CccccccCCC---CCCchhHHHHHHHHHHHHHHhcCCCceEEE----
Confidence 45778888999998888888888888752 221111 111 123555566666666654 588776653
Q ss_pred cCCCCCC---------CChH--HHHHHHHHHHHHHHhc--CCCcEEEEcC
Q 046395 295 NEPKAPD---------LKLD--SLKTYYKAGYDTVRKY--SSSAYVILSN 331 (535)
Q Consensus 295 NEP~~~~---------~~~~--~~~~~~~~~~~aIR~~--~p~~~ii~~~ 331 (535)
=||..-. .+.. ....+.+.+..+|+++ .|+..|.+..
T Consensus 114 lEPDaL~~lvtn~~~~~C~~~~~~~~r~~~l~yAv~~L~~~~na~vYlDa 163 (298)
T PF01341_consen 114 LEPDALANLVTNMSTPACGNAAQQAERLELLAYAVDKLSALPNAWVYLDA 163 (298)
T ss_dssp E-TTCHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-
T ss_pred ECcchhhhhhcccCcccccchhccHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3776411 0111 1234444444455544 4577777754
No 312
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.41 E-value=1.7e+02 Score=32.18 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=41.1
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.|++..+.+.+++..++.|+..+||-... ..+..+..+++.+++.|..+...+
T Consensus 92 ~~y~ddvv~~fv~~a~~~Gidi~RIfd~l--------------ndv~nl~~ai~~vk~ag~~~~~~i 144 (499)
T PRK12330 92 RHYEDEVVDRFVEKSAENGMDVFRVFDAL--------------NDPRNLEHAMKAVKKVGKHAQGTI 144 (499)
T ss_pred cCcchhHHHHHHHHHHHcCCCEEEEEecC--------------ChHHHHHHHHHHHHHhCCeEEEEE
Confidence 45666677899999999999999993321 145888899999999999875544
No 313
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=23.25 E-value=70 Score=24.65 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=18.3
Q ss_pred CCceeEEEEe---ecCcEEE-EecCCCceEE
Q 046395 16 DGTQVQLIST---KLKKYLT-AENGSETILM 42 (535)
Q Consensus 16 ~~~~~~~~~~---~~~~~~~-a~~~g~~~~~ 42 (535)
++..+.|+++ -.|.|.| |.|..|..+.
T Consensus 36 ~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s 66 (74)
T cd05738 36 RSGALQIENSEESDQGKYECVATNSAGTRYS 66 (74)
T ss_pred CCcEEEECCCChhhCEEEEEEEECCCCceEc
Confidence 3445777766 4688998 6788877543
No 314
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.20 E-value=2.7e+02 Score=27.84 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCC-CCCccchHHHHHHHHHHHHHcCCEEEEecCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPP-KPFVGGSLQALDNAFRWAQKYGMKVIVDLHAL 244 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~-~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~ 244 (535)
.+..+.||++|+..+|... ..|... ..|..-..+.+..+-+.|++.||.++-+.|..
T Consensus 44 ~~~A~~lk~~g~~~~r~~~-----~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 44 VKVAEKLKELGVHMLRGGA-----FKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHcCCCEEEEee-----ecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCCh
Confidence 4667788999999999954 223211 12333246777777888999999999999963
No 315
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=23.19 E-value=5.3e+02 Score=26.41 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRDGFQE 262 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~~~~~ 262 (535)
.+-++++|+.|+..||| |+. --.+|+..+.-||.|++.+...+-. ..
T Consensus 16 ~~vv~l~ks~~i~~vri---------------~d~-----~~~iL~a~a~S~i~v~v~vpN~~l~------------~l- 62 (310)
T PF00332_consen 16 CKVVSLLKSNGITKVRI---------------YDA-----DPSILRAFAGSGIEVMVGVPNEDLA------------SL- 62 (310)
T ss_dssp HHHHHHHHHTT--EEEE---------------SS-------HHHHHHHTTS--EEEEEE-GGGHH------------HH-
T ss_pred HHHHHHHHhcccccEEe---------------ecC-----cHHHHHHHhcCCceeeeccChHHHH------------Hh-
Confidence 57788899999999999 211 1247788888999999988742100 00
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 046395 263 WSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSS 324 (535)
Q Consensus 263 W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~ 324 (535)
...+..+..+++.=...|...-+|..+-+.||...... ...+..-++.+.+++++.+-.
T Consensus 63 --a~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~~-~~~lvpAm~ni~~aL~~~~L~ 121 (310)
T PF00332_consen 63 --ASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGTD-NAYLVPAMQNIHNALTAAGLS 121 (310)
T ss_dssp --HHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCSG-GGGHHHHHHHHHHHHHHTT-T
T ss_pred --ccCHHHHhhhhhhcccccCcccceeeeecccccccCcc-ceeeccHHHHHHHHHHhcCcC
Confidence 01222223333332233555456888889999886322 226778888888888887754
No 316
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=23.11 E-value=4.1e+02 Score=21.54 Aligned_cols=71 Identities=7% Similarity=0.172 Sum_probs=36.6
Q ss_pred cCcEEEEecC-CCceEE-eccCCCCCCCCceeEEEEec-CCeEEEEeeCCcEEEeecC--CCeEEEeccCC-CCCCceEE
Q 046395 27 LKKYLTAENG-SETILM-ANHNSSSTSSWQTFRLWRIN-ETFYNFRLSNKQFIGLENQ--GNKLVAVSATE-KFPEPFQI 100 (535)
Q Consensus 27 ~~~~~~a~~~-g~~~~~-anr~~~~~~~we~f~~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~~a~~~~~-~~~e~f~~ 100 (535)
.|+.|.+..+ .+..|+ ...... ..- ++|.+. .+.+.++. .+.-+.+... +..++...-.. ...+.|.+
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~--~~~---Q~W~~~~~g~~~~~~-~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~ 82 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGN--GNN---QKWTLTSDGTIRIKS-SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTF 82 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCC--Ccc---CCEEEeCCCeEEEcC-CCeEEcccCCCCCCEEEEEECCCCCcCCEEEE
Confidence 6777776654 233443 333322 123 344444 45666554 4554444431 23455555555 66888887
Q ss_pred Eec
Q 046395 101 TRK 103 (535)
Q Consensus 101 ~~~ 103 (535)
..+
T Consensus 83 ~~~ 85 (124)
T cd00161 83 NKD 85 (124)
T ss_pred CCC
Confidence 754
No 317
>PRK08508 biotin synthase; Provisional
Probab=22.99 E-value=7.7e+02 Score=24.63 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=70.0
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
..+++.++.|+++|++.+=+.+-- .-.--+ . .. ...++..-+.++.|++.||.+--.+ ..|
T Consensus 99 ~~~~e~l~~Lk~aGld~~~~~lEt--~~~~~~-~-i~~~~~~~~~l~~i~~a~~~Gi~v~sg~--I~G------------ 160 (279)
T PRK08508 99 TASVEQLKELKKAGIFSYNHNLET--SKEFFP-K-ICTTHTWEERFQTCENAKEAGLGLCSGG--IFG------------ 160 (279)
T ss_pred CCCHHHHHHHHHcCCCEEcccccc--hHHHhc-C-CCCCCCHHHHHHHHHHHHHcCCeeccee--EEe------------
Confidence 457999999999999987664321 100000 0 11 1346666668888999998662211 111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 259 GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAPDL-KLDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~~~-~~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
.. +..+..++.+..|.+ ...+ .| -|..++.-...+. ....=...+-++++..|-+-|+..|-+++
T Consensus 161 -lG----Et~ed~~~~l~~lr~-L~~~-sv-pl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~ 226 (279)
T PRK08508 161 -LG----ESWEDRISFLKSLAS-LSPH-ST-PINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAG 226 (279)
T ss_pred -cC----CCHHHHHHHHHHHHc-CCCC-EE-eeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecC
Confidence 00 455666777777754 3332 23 2444443221110 01111234566778888888988887765
No 318
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.99 E-value=1e+02 Score=33.86 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCEEEeCCcccccc-CCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAY-DPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~-~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH 242 (535)
++|++.+.+.|+..|++.+..+... ...-+. -.+..++.+.++++.|+++|+.|.+++-
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~-s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKK-TREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 7899999999999999977654321 100011 1234788888999999999999988764
No 319
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.89 E-value=2e+02 Score=31.40 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=39.0
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.||+..+.+.-++..++.|+..+|+--. . +..+-+...++.+++.|+.+.+.+
T Consensus 100 ~~ypddvv~~fv~~a~~~Gidi~Rifd~------------l--nd~~n~~~ai~~ak~~G~~~~~~i 152 (468)
T PRK12581 100 RHYADDIVDKFISLSAQNGIDVFRIFDA------------L--NDPRNIQQALRAVKKTGKEAQLCI 152 (468)
T ss_pred cCCcchHHHHHHHHHHHCCCCEEEEccc------------C--CCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3454445555588889999999999211 1 256888999999999999977544
No 320
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=22.77 E-value=6.8e+02 Score=23.98 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
|--...||++|++.+=|.=+ +. . |.+.. +.+-+..|.++||.+||+.
T Consensus 71 evS~~mLkd~G~~~viiGHS-----ER---R-f~Etd---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 71 EISAEMLKDIGAKGTLINHS-----ER---R-MKLAD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred cCCHHHHHHcCCCEEEECcc-----cC---C-CCccH---HHHHHHHHHHCCCEEEEEE
Confidence 44567889999999977322 21 1 54444 7888999999999999988
No 321
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=22.50 E-value=2.1e+02 Score=27.34 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHc-CCEEEEecCCC
Q 046395 184 EDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKY-GMKVIVDLHAL 244 (535)
Q Consensus 184 ~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~-Gi~VIldlH~~ 244 (535)
.--+.|.+.|++++-.-- ...+..|...+-.-.+.+-+..+++ +|+++||+|..
T Consensus 38 ~L~~~Le~~Gi~vihd~t-------~~~~~~y~~sY~~Sr~tv~~~l~~~p~i~~viDiHRD 92 (196)
T TIGR02867 38 RLAKELEEKGIGVIHDKT-------VHDGLNYEQSYDRSRETVKKALKENKDLKYIIDLHRD 92 (196)
T ss_pred HHHHHHHHCCCeEEEeCC-------ccCCccHHHHHHHHHHHHHHHHHHCCCceEEEEeecC
Confidence 444567778999987622 1111124333333334444555556 78999999963
No 322
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.13 E-value=1.8e+02 Score=27.90 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=38.4
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccc--hHHHHHHHHHHHHHc
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGG--SLQALDNAFRWAQKY 233 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~--~l~~ld~~i~~a~~~ 233 (535)
++.++-+...-.+.+.+.|+.++|+-+- ......| +|+.+ .++....+++|++++
T Consensus 42 Gtm~nkvv~~la~~l~~~G~atlRfNfR---gVG~S~G-~fD~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 42 GTMNNKVVQTLARALVKRGFATLRFNFR---GVGRSQG-EFDNGIGELEDAAAALDWLQAR 98 (210)
T ss_pred CccCCHHHHHHHHHHHhCCceEEeeccc---ccccccC-cccCCcchHHHHHHHHHHHHhh
Confidence 4555666677788899999999998551 1122223 36553 688888999999876
No 323
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.08 E-value=4.7e+02 Score=21.83 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 046395 285 HPSLVAIELMNEPKAPDLKLDSLKTYYKAGYDTVRKYSSSAYVILSNRL 333 (535)
Q Consensus 285 ~p~V~~~el~NEP~~~~~~~~~~~~~~~~~~~aIR~~~p~~~ii~~~~~ 333 (535)
+|.++++.....+. .....++.+.+|+.+|+..+++++..
T Consensus 51 ~pd~V~iS~~~~~~---------~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 51 RPDVVGISVSMTPN---------LPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp TCSEEEEEESSSTH---------HHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred CCcEEEEEccCcCc---------HHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 67899998875544 23446777779999999999988743
No 324
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=22.05 E-value=1.8e+02 Score=32.69 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=40.4
Q ss_pred hhhCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 175 DHWKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 175 ~hw~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
.|+..-+.+++++..++.|+..+|+.... . ..+.+...++.|+++|+.|...+
T Consensus 86 ~~ypddvv~~~v~~a~~~Gvd~irif~~l---------n-----d~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 86 RHYADDVVERFVKKAVENGMDVFRIFDAL---------N-----DPRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred ccCchhhHHHHHHHHHHCCCCEEEEEEec---------C-----cHHHHHHHHHHHHHcCCEEEEEE
Confidence 34555567889999999999999995432 0 23668888899999999888765
No 325
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.93 E-value=1.7e+02 Score=32.88 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=35.8
Q ss_pred hCccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 046395 177 WKSYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIV 239 (535)
Q Consensus 177 w~~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIl 239 (535)
|...+.+.+++..++.|+..+||-... ..++.+...|+.|+++|+.+..
T Consensus 94 ypddvv~~~v~~a~~~Gid~~rifd~l--------------nd~~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 94 YADDVVERFVERAVKNGMDVFRVFDAM--------------NDPRNLETALKAVRKVGAHAQG 142 (593)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeeeC--------------CcHHHHHHHHHHHHHcCCeEEE
Confidence 333455788999999999999994311 1346788888999999987543
No 326
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=21.83 E-value=1.8e+02 Score=28.83 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHcCCEEEEecCC
Q 046395 218 GSLQALDNAFRWAQKYGMKVIVDLHA 243 (535)
Q Consensus 218 ~~l~~ld~~i~~a~~~Gi~VIldlH~ 243 (535)
.-|+.+|++++.|...-=.+|+|+|+
T Consensus 127 ~PF~~~d~l~~~~~~~~~~iiVDFHA 152 (266)
T COG1692 127 NPFKAADKLLDEIKLGTDLIIVDFHA 152 (266)
T ss_pred CHHHHHHHHHHhCccCCceEEEEccc
Confidence 45899999999988777789999997
No 327
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=21.73 E-value=45 Score=32.51 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEe
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVD 240 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIld 240 (535)
-.+.+...++|.+.|=+-+.|..... + -....++.+.++++.|+++||+|||.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~----~-~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS----G-NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT----T-HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc----c-cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 47788889999999999887632211 1 12337889999999999999999997
No 328
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.59 E-value=2e+02 Score=27.99 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcCCCEEEe-CCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCE
Q 046395 182 TEEDFKFMSQNGLNAVRI-PVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMK 236 (535)
Q Consensus 182 te~D~~~ik~~G~N~VRi-pv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~ 236 (535)
.|.-+++|+++|.++|.+ |+ .|- ..++.|..+.+.|.++|++
T Consensus 137 vetAiaml~dmG~~SiKffPM---------~Gl----~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPM---------GGL----KHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeec---------CCc----ccHHHHHHHHHHHHHcCCc
Confidence 378889999999999986 22 221 2678888888999999986
No 329
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=21.40 E-value=7.3e+02 Score=24.69 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCcEEEEcCCCCCChhhhhcccCCCCcEE--EEEeecCcCCCcccCCChhhhHHHHHHhhhHHHHHHhhcC
Q 046395 314 GYDTVRKYSSSAYVILSNRLGGEWSELLSFASNLSRVV--IDVHFYNLFWDNFNKMSVQQNIDYIYRQRSSDLRNVTTSD 391 (535)
Q Consensus 314 ~~~aIR~~~p~~~ii~~~~~g~~~~~~~~~~~~~~n~v--~d~H~Y~~~~~~~~~~~~~~~i~~i~~~~~~~l~~~~~~~ 391 (535)
+++..++.+-..+++++... .++...+......+++. +.+|+.. .....+...+.+.. +....
T Consensus 22 vi~~a~~~gv~~~~~~g~~~-~~~~~~~~la~~y~~v~~~~G~HP~~------~~~~~~~~~~~l~~--------~~~~~ 86 (256)
T COG0084 22 VIARAREAGVKKMVVVGTDL-EDFKRALELAEKYPNVYAAVGVHPLD------ADEHSEEDLEELEQ--------LAEHH 86 (256)
T ss_pred HHHHHHHcCCcEEEEeecCH-HHHHHHHHHHHhCCCeEEEEeeCCCc------cccccHHHHHHHHH--------HHhcC
Confidence 45555565566666666543 23333333333344443 4456654 11112223333322 22211
Q ss_pred CCcEEEeccCCCcCCCCC-CHHHHHHHHHHHHHHHhhCCcceEEE
Q 046395 392 GPLSFVGEWSCEWEAEGA-SKRDYQRFAEAQLDVYGRATFGWAYW 435 (535)
Q Consensus 392 ~p~v~vGEfg~~~~~~~~-~~~~~~~~~~~ql~~~~~~~~Gw~~W 435 (535)
...+-|||-|........ ..+...+++++|++...+.+..-+..
T Consensus 87 ~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH 131 (256)
T COG0084 87 PKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIH 131 (256)
T ss_pred CCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 244689999987543322 34455677888888887766444433
No 330
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=21.37 E-value=3e+02 Score=28.01 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIV 239 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIl 239 (535)
++.++.+++.|.+.|.+-+.. ....+........-..+.+..+++.|+++|+.|.+
T Consensus 123 ~~~v~~~~~~G~~~iK~~~~g-~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~ 178 (342)
T cd01299 123 RAAVREQLRRGADQIKIMATG-GVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAA 178 (342)
T ss_pred HHHHHHHHHhCCCEEEEeccC-CcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEE
Confidence 567888888999999996543 11111110000111467889999999999998776
No 331
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.30 E-value=78 Score=30.40 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCcccCCcccceecccccccccchhhhccChhhhhHhHHhhhCccchHHHHH
Q 046395 136 STWEENDPSVFNMTIVSTMHGEYQITNGYGPDKAAKLMRDHWKSYITEEDFK 187 (535)
Q Consensus 136 ~~w~~~~ps~f~~~~~~~~~~e~~~~~~~G~~~a~~~~~~hw~~~ite~D~~ 187 (535)
+||++..|.+|..-.........-.+.+.|...+...|+++|..-+++++.-
T Consensus 135 ~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai 186 (212)
T cd03751 135 GGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAV 186 (212)
T ss_pred EEEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHH
Confidence 4455556888876443332222335677888889999999998777666653
No 332
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=21.28 E-value=1e+02 Score=32.31 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCC--ccchHHHHHHHHHHHHHcCCEEEEec
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPF--VGGSLQALDNAFRWAQKYGMKVIVDL 241 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~--~~~~l~~ld~~i~~a~~~Gi~VIldl 241 (535)
-++++.++.|++.|++.|+|++.-. ++...... ..+.++.+-+.++.++++|+.|.|..
T Consensus 101 ll~~~~~~~L~~~g~~~v~iSldg~---~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~ 161 (378)
T PRK05301 101 GLTEARLAALKDAGLDHIQLSFQDS---DPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA 161 (378)
T ss_pred cCCHHHHHHHHHcCCCEEEEEecCC---CHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE
Confidence 3678899999999999999987521 11000000 12367888888999999999987754
No 333
>PLN02623 pyruvate kinase
Probab=21.21 E-value=99 Score=34.56 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHH---cCCEEEEecCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQK---YGMKVIVDLHAL 244 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~---~Gi~VIldlH~~ 244 (535)
++.++.|-+.|+|.+||-++. +. + +...+.++.+=+.+++ +.+.+++|+-+.
T Consensus 125 ~e~l~~li~aGmnv~RlNfSH--------g~-~-e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GP 179 (581)
T PLN02623 125 REMIWKLAEAGMNVARLNMSH--------GD-H-ASHQKVIDLVKEYNAQSKDNVIAIMLDTKGP 179 (581)
T ss_pred HHHHHHHHHcCCCEEEEECCC--------CC-H-HHHHHHHHHHHHHHHHcCCCceEEEecCCCC
Confidence 789999999999999997754 11 1 1122223322233333 458999999753
No 334
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=5.7e+02 Score=26.15 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=64.5
Q ss_pred cCcEEEEecCCCceEEeccCCCCCCCCceeEEEEecCCeE-EEEee-CCcEEEeecCCCe---EEEeccCCCCCCceEEE
Q 046395 27 LKKYLTAENGSETILMANHNSSSTSSWQTFRLWRINETFY-NFRLS-NKQFIGLENQGNK---LVAVSATEKFPEPFQIT 101 (535)
Q Consensus 27 ~~~~~~a~~~g~~~~~anr~~~~~~~we~f~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~---~~a~~~~~~~~e~f~~~ 101 (535)
.|-+.++-+|+..+=+=|+.+-.-++-+||.+=.-+...+ .++-+ +|+++-+..+++. |-|-+.+ .-++|..-
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~ 228 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT--VKSTFSGY 228 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--EeeeEeec
Confidence 4677777788877777788777567888888654334444 45533 8999988753332 5666666 58999999
Q ss_pred ecCCCCceeEEEecCCceEEE
Q 046395 102 RKNGEPHRVRFRASNGYFLQA 122 (535)
Q Consensus 102 ~~~~~~~~v~I~~~nG~flq~ 122 (535)
+|...-.--....|.|+|+-.
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLS 249 (311)
T ss_pred cCCCCcceeEEECCCCcEEEE
Confidence 987543344567799999854
No 335
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=21.03 E-value=69 Score=34.72 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCCcEEEeccCCCcCCC---C-CCH----HHHHHHHHHHHHHHhhCC---cceEEEeeeeC
Q 046395 391 DGPLSFVGEWSCEWEAE---G-ASK----RDYQRFAEAQLDVYGRAT---FGWAYWAYKFA 440 (535)
Q Consensus 391 ~~p~v~vGEfg~~~~~~---~-~~~----~~~~~~~~~ql~~~~~~~---~Gw~~W~~k~~ 440 (535)
+.||++|.|-|...... + -.. ..+++++.+.+++.+ .+ .|.++|++-..
T Consensus 354 ~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~-dGv~V~GY~~WSl~Dn 413 (455)
T PF00232_consen 354 GNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIE-DGVNVRGYFAWSLLDN 413 (455)
T ss_dssp TSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEETSB--
T ss_pred CCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhc-cCCCeeeEeeeccccc
Confidence 33889999999864321 0 001 123556666666664 44 59999998664
No 336
>PRK10425 DNase TatD; Provisional
Probab=20.85 E-value=8.2e+02 Score=24.17 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=30.7
Q ss_pred CcEEEeccCCCcCCCCCCHHHHHHHHHHHHHHHhhCCcceEEEee
Q 046395 393 PLSFVGEWSCEWEAEGASKRDYQRFAEAQLDVYGRATFGWAYWAY 437 (535)
Q Consensus 393 p~v~vGEfg~~~~~~~~~~~~~~~~~~~ql~~~~~~~~Gw~~W~~ 437 (535)
..+-|||-|..........+...+++++|++...+.+..-+..+-
T Consensus 85 ~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r 129 (258)
T PRK10425 85 EVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCR 129 (258)
T ss_pred CEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 346799999875422234444568899999998877766555554
No 337
>PF14881 Tubulin_3: Tubulin domain
Probab=20.79 E-value=5e+02 Score=24.29 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=39.5
Q ss_pred hHHH-HHHHHHHHHHc-CCEEEEecCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEe
Q 046395 219 SLQA-LDNAFRWAQKY-GMKVIVDLHALRVSQNGSPHSGSRDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIEL 293 (535)
Q Consensus 219 ~l~~-ld~~i~~a~~~-Gi~VIldlH~~pg~~ng~~~sg~~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el 293 (535)
.++. |...++.|... |+.++.|++.+=| --+..+++.|...|.+.+.|.+|.+
T Consensus 59 ~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg----------------------Gfas~~Le~L~DEy~k~~i~~~~~~ 113 (180)
T PF14881_consen 59 FFDRDLRFFLEECDSLQGFQVLTDVDDGWG----------------------GFASSLLEHLRDEYPKKPIIWVWGL 113 (180)
T ss_pred HHHHHHHHHHHHcccccceEEEecCCCchH----------------------hHHHHHHHHHHHHcCCCceEEeecC
Confidence 4554 88899999876 9999999985311 2456889999999998776555544
No 338
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.66 E-value=5.8e+02 Score=26.31 Aligned_cols=132 Identities=12% Similarity=0.039 Sum_probs=68.0
Q ss_pred chHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccc--hHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCCC
Q 046395 181 ITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGG--SLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSRD 258 (535)
Q Consensus 181 ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~--~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~~ 258 (535)
.+++.++.||++|++.+=. .+.. .+.+.-......+ ..+..-+.++.|++.||++--.+- .
T Consensus 139 ~~~e~l~~LkeAGl~~i~~-~~~E-~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i---------------~ 201 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMPG-TAAE-ILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIM---------------Y 201 (343)
T ss_pred CHHHHHHHHHHhCcccccC-cchh-hcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEE---------------E
Confidence 4689999999999997631 1111 1111100001111 344456799999999998743221 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeec--CCCCCC----CC-hHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 046395 259 GFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMN--EPKAPD----LK-LDSLKTYYKAGYDTVRKYSSSAYVILSN 331 (535)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~N--EP~~~~----~~-~~~~~~~~~~~~~aIR~~~p~~~ii~~~ 331 (535)
|.. ...+.+.....+++.+-..+..-. .+-.+| -|..+- .. ...=..-+-++++..|=.-|+..+-+..
T Consensus 202 G~~-Et~ed~~~~l~~lr~l~~~~~~~~---~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a 277 (343)
T TIGR03551 202 GHV-ETPEHWVDHLLILREIQEETGGFT---EFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQA 277 (343)
T ss_pred ecC-CCHHHHHHHHHHHHHhhHHhCCee---EEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeec
Confidence 111 112455666667777766665432 233333 122110 00 0001334556778888888887544444
Q ss_pred CC
Q 046395 332 RL 333 (535)
Q Consensus 332 ~~ 333 (535)
.|
T Consensus 278 ~~ 279 (343)
T TIGR03551 278 SW 279 (343)
T ss_pred cc
Confidence 43
No 339
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=20.63 E-value=2.7e+02 Score=30.03 Aligned_cols=96 Identities=10% Similarity=0.259 Sum_probs=56.5
Q ss_pred ccchHHHHHHHHHcCCCEEEeCCccccccCCCCCCCCc-cchHHHHHHHHHHHHHcCCEEEEecCCCCCCCCCCCCCCCC
Q 046395 179 SYITEEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFV-GGSLQALDNAFRWAQKYGMKVIVDLHALRVSQNGSPHSGSR 257 (535)
Q Consensus 179 ~~ite~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~-~~~l~~ld~~i~~a~~~Gi~VIldlH~~pg~~ng~~~sg~~ 257 (535)
|-++++|+++|.+.++.=+.|+|+. .+|.-...+. ...-..+-+.+++..+.||.+...+-.+||-..
T Consensus 124 TNl~~~d~~RI~~~~lspl~iSVha---t~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiND-------- 192 (433)
T TIGR03279 124 TNLPPAEWQRIEQLRLSPLYVSVHA---TEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGIND-------- 192 (433)
T ss_pred cCCCHHHHHHHHHcCCCCEEEEEec---CCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCC--------
Confidence 3567999999999999999998864 2332100000 012344555677777888877555555565211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEee
Q 046395 258 DGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELM 294 (535)
Q Consensus 258 ~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~ 294 (535)
+ +..+++++.+..+.+ +.+|.|...-+.
T Consensus 193 -g------~~L~~Ti~dL~~~~~--~~~P~v~S~avV 220 (433)
T TIGR03279 193 -G------KHLERTLRDLAQFHD--GDWPTVLSVAVV 220 (433)
T ss_pred -H------HHHHHHHHHHHhhcc--cCCCceeEEEEE
Confidence 1 445555555544432 567877654443
No 340
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.25 E-value=4.2e+02 Score=22.63 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHc-CCEEEEecC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKY-GMKVIVDLH 242 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~-Gi~VIldlH 242 (535)
..-++.|++.|+.+|-|+---- ...+.+.=|+ +|++.+..++. |+.||...|
T Consensus 55 ~~~~~~l~~~~~d~IHlssC~~-~~~~~~~CP~-------~~~~~~~I~~~~gi~VV~GTH 107 (107)
T PF08821_consen 55 VRRIKKLKKNGADVIHLSSCMV-KGNPHGPCPH-------IDEIKKIIEEKFGIEVVEGTH 107 (107)
T ss_pred HHHHHHHHHCCCCEEEEcCCEe-cCCCCCCCCC-------HHHHHHHHHHHhCCCEeeecC
Confidence 4677888999999998865321 1111111122 44455554454 999998776
No 341
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=20.21 E-value=1e+03 Score=25.09 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHcCCCEEEeCCcc-ccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEE--ecCCCCCCCCCCCCCCC
Q 046395 180 YITEEDFKFMSQNGLNAVRIPVGW-WIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIV--DLHALRVSQNGSPHSGS 256 (535)
Q Consensus 180 ~ite~D~~~ik~~G~N~VRipv~~-w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIl--dlH~~pg~~ng~~~sg~ 256 (535)
-++++..+.+++.|+ .|=|.+.= ...-+......--.+.++++-+.|+.++++++.+.+ .++.
T Consensus 101 LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv~~------------- 166 (378)
T COG0641 101 LLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVVNR------------- 166 (378)
T ss_pred ccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEEch-------------
Confidence 367888999999999 88886631 000010000000124689999999999999987433 3332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCC------CCChHHHHHHHHHHHHHHHhcCC
Q 046395 257 RDGFQEWSDSDIQETVAIIDFLASRYADHPSLVAIELMNEPKAP------DLKLDSLKTYYKAGYDTVRKYSS 323 (535)
Q Consensus 257 ~~~~~~W~~~~~~~~~~~~~~la~ry~~~p~V~~~el~NEP~~~------~~~~~~~~~~~~~~~~aIR~~~p 323 (535)
++.++..++.+.+.+.- ...+..+.++-..... ......+.+|+....+..++.+-
T Consensus 167 ---------~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~ 228 (378)
T COG0641 167 ---------QNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHDV 228 (378)
T ss_pred ---------hHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhcC
Confidence 45556666666666543 1123222333333221 23467899999999999888873
No 342
>PRK15452 putative protease; Provisional
Probab=20.11 E-value=7.3e+02 Score=26.85 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEEecCCCC
Q 046395 183 EEDFKFMSQNGLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIVDLHALR 245 (535)
Q Consensus 183 e~D~~~ik~~G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIldlH~~p 245 (535)
-+.++..-+.|+++|=++..-+..-. ....| .++.|.++++.|+++|.+|.+.+...+
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~--~~~~f---~~edl~eav~~ah~~g~kvyvt~n~i~ 70 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRV--RNNEF---NHENLALGINEAHALGKKFYVVVNIAP 70 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhh--hccCC---CHHHHHHHHHHHHHcCCEEEEEecCcC
Confidence 35566666789999999764322111 11224 457799999999999999999877653
No 343
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=20.04 E-value=2.3e+02 Score=23.62 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=33.4
Q ss_pred chHHHHHHHHHc-CCCEEEeCCccccccCCCCCCCCccchHHHHHHHHHHHHHcCCEEEE
Q 046395 181 ITEEDFKFMSQN-GLNAVRIPVGWWIAYDPKPPKPFVGGSLQALDNAFRWAQKYGMKVIV 239 (535)
Q Consensus 181 ite~D~~~ik~~-G~N~VRipv~~w~~~~p~~~~~~~~~~l~~ld~~i~~a~~~Gi~VIl 239 (535)
.+..|++.+-+. .+..+++-+.. -+.+....++.+.|+++||.+++
T Consensus 5 ~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 5 FSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp SSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 346777776554 57888884432 23678899999999999999988
Done!