BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046396
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WH7|A Chain A, Solution Structure Of Homeobox Domain Of Arabidopsis
Thaliana Hypothetical Protein F22k18.140
Length = 80
Score = 87.4 bits (215), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 47/58 (81%)
Query: 205 KRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNA 262
KR RTKFT EQKEKML+FAERLGW++ + ++ + FC+E GV R+V K+WMHNNKN+
Sbjct: 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75
>pdb|1WH5|A Chain A, Solution Structure Of Homeobox Domain Of
Arabidopsisthaliana Zinc Finger Homeobox Family Protein
Length = 80
Score = 87.0 bits (214), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/59 (57%), Positives = 48/59 (81%)
Query: 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNA 262
+KR RTKFT EQKE+ML+ AER+GW++ R ++++ Q FC E GV R+V KVW+HNNK++
Sbjct: 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHS 75
>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
Paired Box Protein Pax-6
Length = 80
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 199 SSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHN 258
SS + +R+RT FTQEQ E + ER + A E+L +++ + +VW +
Sbjct: 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLA----AKIDLPEARIQVWF-S 56
Query: 259 NKNASGRKDQRSINNK 274
N+ A R++++ N +
Sbjct: 57 NRRAKWRREEKLRNQR 72
>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant
Length = 61
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260
+KR RT F+ EQ L+ A+R + E+ Q SE+G++ K+W N +
Sbjct: 3 EKRPRTAFSSEQ----LARAKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 55
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNR-AEEKLTQDFCSEVGVSRRVFKVWMHNNK 260
+KR RT F+ EQ ++ + + NR E+ Q SE+G++ K+W N +
Sbjct: 3 EKRPRTAFSSEQLARL-----KREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 55
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 230 MNRAEEKLTQDFCSEVGVSRR----VFKVWMH----NNKNASGRKDQRS 270
MN +E K+ ++F E G++ + +F+ H N +N +GRKD S
Sbjct: 13 MNESERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVES 61
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNR-AEEKLTQDFCSEVGVSRRVFKVWMHNNK 260
+KR RT F+ EQ ++ + + NR E+ Q SE+G++ K+W N +
Sbjct: 1 EKRPRTAFSSEQLARL-----KREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNER 53
>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
Length = 60
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNR-AEEKLTQDFCSEVGVSRRVFKVWMHNNK 260
+KR RT F+ EQ ++ + + NR E+ Q SE+G++ K+W N +
Sbjct: 1 EKRPRTAFSSEQLARL-----KREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKR 53
>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
Length = 61
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNR-AEEKLTQDFCSEVGVSRRVFKVWMHNNK 260
+KR RT F+ EQ ++ + + NR E+ Q SE+G++ K+W N +
Sbjct: 2 AEKRPRTAFSSEQLARL-----KREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKR 55
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNR-AEEKLTQDFCSEVGVSRRVFKVWMHNNK 260
+KR RT F+ EQ ++ + + NR E+ Q SE+G++ K+W N +
Sbjct: 1 EKRPRTAFSSEQLARL-----KREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNAR 53
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 52 ECLKNHAASLGGHALDGCGEFMPSPTAT 79
E +K +A + GH L GCG ++P A
Sbjct: 254 EQMKAYAEDVEGHVLPGCGHWLPEECAA 281
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 52 ECLKNHAASLGGHALDGCGEFMPSPTAT 79
E +K +A + GH L GCG ++P A
Sbjct: 254 EQMKAYAEDVEGHVLPGCGHWLPEECAA 281
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 52 ECLKNHAASLGGHALDGCGEFMPSPTATSNDPASLNCAACG 92
E +K +A + GH L GCG ++P A + ++ + G
Sbjct: 254 EQMKAYAEDVEGHVLPGCGHWLPEECAAPMNRLVIDFLSRG 294
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 108 AATHRLPPAATASHSTDPSTVPSPDTNTNSPQ 139
AATH L + HS+DP+ V P PQ
Sbjct: 118 AATHELGHSLGMGHSSDPNAVMYPTYGNGDPQ 149
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 108 AATHRLPPAATASHSTDPSTVPSPDTNTNSPQ 139
AATH L + HS+DP+ V P PQ
Sbjct: 117 AATHELGHSLGMGHSSDPNAVMYPTYGNGDPQ 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,680,484
Number of Sequences: 62578
Number of extensions: 375083
Number of successful extensions: 596
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 24
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)