Query 046396
Match_columns 314
No_of_seqs 261 out of 1219
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 20:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.9 2.2E-23 7.4E-28 162.4 5.8 67 200-266 13-79 (80)
2 1wh7_A ZF-HD homeobox family p 99.9 3E-23 1E-27 162.0 5.8 68 199-266 12-79 (80)
3 2dmq_A LIM/homeobox protein LH 99.8 6.1E-20 2.1E-24 141.2 4.5 67 201-271 4-70 (80)
4 2da3_A Alpha-fetoprotein enhan 99.8 4.4E-20 1.5E-24 141.5 3.6 67 198-268 11-77 (80)
5 2dms_A Homeobox protein OTX2; 99.8 1.4E-19 4.8E-24 139.5 5.1 68 201-272 4-71 (80)
6 2da4_A Hypothetical protein DK 99.8 4.4E-20 1.5E-24 142.3 1.9 70 200-269 4-73 (80)
7 2dmt_A Homeobox protein BARH-l 99.8 2.3E-19 7.8E-24 138.5 5.5 66 199-268 12-77 (80)
8 2kt0_A Nanog, homeobox protein 99.8 3.8E-19 1.3E-23 137.9 6.3 67 199-269 17-83 (84)
9 2cra_A Homeobox protein HOX-B1 99.8 2.2E-19 7.4E-24 135.2 4.5 64 201-268 4-67 (70)
10 2da2_A Alpha-fetoprotein enhan 99.8 3.2E-19 1.1E-23 133.9 4.1 65 200-268 3-67 (70)
11 2dmu_A Homeobox protein goosec 99.7 3.6E-19 1.2E-23 133.9 3.7 63 202-268 5-67 (70)
12 2djn_A Homeobox protein DLX-5; 99.7 4.1E-19 1.4E-23 133.7 3.7 64 201-268 4-67 (70)
13 2da1_A Alpha-fetoprotein enhan 99.7 3.1E-19 1.1E-23 134.0 2.9 64 201-268 4-67 (70)
14 2vi6_A Homeobox protein nanog; 99.7 6.1E-19 2.1E-23 129.7 3.0 61 203-267 2-62 (62)
15 2cue_A Paired box protein PAX6 99.7 4.1E-19 1.4E-23 137.1 2.0 65 202-270 5-69 (80)
16 2e1o_A Homeobox protein PRH; D 99.7 1E-18 3.5E-23 131.6 3.6 63 202-268 5-67 (70)
17 1nk2_P Homeobox protein VND; h 99.7 9.5E-19 3.2E-23 134.1 3.1 66 200-269 5-70 (77)
18 2h1k_A IPF-1, pancreatic and d 99.7 7.9E-19 2.7E-23 129.7 2.3 61 203-267 2-62 (63)
19 2da5_A Zinc fingers and homeob 99.7 2.5E-18 8.7E-23 131.5 4.8 64 205-272 8-71 (75)
20 1bw5_A ISL-1HD, insulin gene e 99.7 1.9E-18 6.6E-23 128.5 3.5 62 203-268 2-63 (66)
21 2hdd_A Protein (engrailed home 99.7 1.2E-18 4.1E-23 127.8 2.4 60 203-266 2-61 (61)
22 2m0c_A Homeobox protein arista 99.7 2.7E-18 9.1E-23 129.9 4.3 66 201-270 6-71 (75)
23 2dn0_A Zinc fingers and homeob 99.7 3E-18 1E-22 131.0 4.6 64 203-270 7-70 (76)
24 2l7z_A Homeobox protein HOX-A1 99.7 3.9E-18 1.3E-22 129.7 5.0 64 202-269 5-68 (73)
25 1ahd_P Antennapedia protein mu 99.7 1.5E-18 5.2E-23 130.3 2.1 63 204-270 2-64 (68)
26 1b8i_A Ultrabithorax, protein 99.7 1.8E-18 6.1E-23 134.1 2.4 62 203-268 19-80 (81)
27 1puf_A HOX-1.7, homeobox prote 99.7 3.1E-18 1.1E-22 131.3 3.3 65 200-268 9-73 (77)
28 2r5y_A Homeotic protein sex co 99.7 2E-18 7E-23 135.4 1.9 62 202-267 26-87 (88)
29 3a01_A Homeodomain-containing 99.7 4.1E-18 1.4E-22 135.5 3.5 68 200-271 13-80 (93)
30 1ig7_A Homeotic protein MSX-1; 99.7 3.2E-18 1.1E-22 124.0 2.5 57 205-265 1-57 (58)
31 1zq3_P PRD-4, homeotic bicoid 99.7 2.7E-18 9.3E-23 128.7 2.1 63 204-270 2-64 (68)
32 1yz8_P Pituitary homeobox 2; D 99.7 1.1E-18 3.8E-23 130.7 -0.2 64 203-270 2-65 (68)
33 1fjl_A Paired protein; DNA-bin 99.7 3.4E-18 1.2E-22 132.0 2.4 65 200-268 14-78 (81)
34 3nar_A ZHX1, zinc fingers and 99.7 4.1E-18 1.4E-22 135.9 2.8 66 199-268 20-85 (96)
35 1jgg_A Segmentation protein EV 99.7 4E-18 1.4E-22 124.6 2.4 58 205-266 2-59 (60)
36 1ftt_A TTF-1 HD, thyroid trans 99.7 5.2E-18 1.8E-22 127.2 2.9 63 204-270 2-64 (68)
37 2cuf_A FLJ21616 protein; homeo 99.7 8.5E-18 2.9E-22 133.7 3.6 65 201-269 4-83 (95)
38 3rkq_A Homeobox protein NKX-2. 99.7 6.7E-18 2.3E-22 121.5 2.5 57 204-264 2-58 (58)
39 2k40_A Homeobox expressed in E 99.7 6.4E-18 2.2E-22 126.0 2.5 62 204-269 1-62 (67)
40 1wi3_A DNA-binding protein SAT 99.7 9.8E-18 3.3E-22 128.6 3.3 63 200-265 3-65 (71)
41 2ly9_A Zinc fingers and homeob 99.7 3.6E-17 1.2E-21 123.9 5.0 62 203-268 5-66 (74)
42 1b72_A Protein (homeobox prote 99.7 7.7E-18 2.6E-22 134.4 1.3 64 202-269 32-95 (97)
43 2hi3_A Homeodomain-only protei 99.7 1.9E-17 6.7E-22 125.6 3.3 61 205-269 3-64 (73)
44 3a02_A Homeobox protein arista 99.7 1.4E-17 4.6E-22 121.8 2.1 58 207-268 2-59 (60)
45 1akh_A Protein (mating-type pr 99.7 1.5E-17 5.2E-22 121.5 2.2 59 202-264 3-61 (61)
46 1uhs_A HOP, homeodomain only p 99.7 2.3E-17 7.9E-22 124.7 3.2 62 205-270 2-64 (72)
47 2ecb_A Zinc fingers and homeob 99.7 5.9E-17 2E-21 129.2 4.9 58 210-271 17-74 (89)
48 2dmp_A Zinc fingers and homeob 99.7 9.7E-17 3.3E-21 126.8 6.1 61 208-272 17-77 (89)
49 1du6_A PBX1, homeobox protein 99.7 2.6E-17 9E-22 121.5 2.5 60 203-266 2-64 (64)
50 2ecc_A Homeobox and leucine zi 99.6 4E-17 1.4E-21 127.0 3.1 60 206-269 5-64 (76)
51 1x2n_A Homeobox protein pknox1 99.6 8.5E-17 2.9E-21 121.7 4.0 67 201-268 4-70 (73)
52 2dmn_A Homeobox protein TGIF2L 99.6 1.2E-16 4.2E-21 124.5 5.0 70 201-271 4-73 (83)
53 3a03_A T-cell leukemia homeobo 99.6 3.9E-17 1.3E-21 118.1 1.5 54 209-266 2-55 (56)
54 1e3o_C Octamer-binding transcr 99.6 6.3E-17 2.2E-21 139.9 2.8 63 201-267 98-160 (160)
55 1b72_B Protein (PBX1); homeodo 99.6 3E-17 1E-21 127.9 0.4 63 204-270 1-66 (87)
56 1puf_B PRE-B-cell leukemia tra 99.6 7.1E-17 2.4E-21 122.2 2.4 62 204-269 1-65 (73)
57 1au7_A Protein PIT-1, GHF-1; c 99.6 1.1E-16 3.8E-21 136.8 3.2 63 201-267 84-146 (146)
58 2da6_A Hepatocyte nuclear fact 99.6 1.1E-16 3.9E-21 130.7 2.6 67 201-271 3-90 (102)
59 2xsd_C POU domain, class 3, tr 99.6 1E-16 3.5E-21 139.6 2.3 65 201-269 96-160 (164)
60 3d1n_I POU domain, class 6, tr 99.6 2.1E-16 7.1E-21 135.2 3.9 62 200-265 89-150 (151)
61 1lfb_A Liver transcription fac 99.6 2.3E-16 7.9E-21 127.7 2.0 67 201-271 6-93 (99)
62 1mnm_C Protein (MAT alpha-2 tr 99.6 6.8E-16 2.3E-20 120.7 3.2 63 202-265 25-87 (87)
63 2cqx_A LAG1 longevity assuranc 99.6 2.9E-16 1E-20 119.8 0.6 59 205-267 9-68 (72)
64 1k61_A Mating-type protein alp 99.6 1E-15 3.6E-20 111.5 3.0 59 207-266 1-59 (60)
65 1le8_B Mating-type protein alp 99.5 1.4E-15 4.9E-20 118.2 3.3 63 204-267 2-64 (83)
66 2l9r_A Homeobox protein NKX-3. 99.5 1.4E-15 4.7E-20 115.8 3.1 57 210-270 10-66 (69)
67 2d5v_A Hepatocyte nuclear fact 99.5 1.4E-15 4.8E-20 131.2 3.1 66 201-270 94-159 (164)
68 3l1p_A POU domain, class 5, tr 99.5 8.9E-16 3E-20 132.2 0.9 61 202-266 94-154 (155)
69 2e19_A Transcription factor 8; 99.5 4.8E-15 1.6E-19 110.8 3.2 56 208-267 7-62 (64)
70 3nau_A Zinc fingers and homeob 99.5 6.2E-15 2.1E-19 112.0 1.3 51 212-266 12-62 (66)
71 1x2m_A LAG1 longevity assuranc 99.4 9.9E-15 3.4E-19 110.1 0.9 51 213-267 9-60 (64)
72 3k2a_A Homeobox protein MEIS2; 99.4 6.6E-14 2.2E-18 105.2 1.8 60 210-270 4-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 6.2E-14 2.1E-18 125.7 0.3 63 200-266 111-194 (194)
74 2h8r_A Hepatocyte nuclear fact 99.2 1.7E-12 5.9E-17 118.6 2.9 61 199-263 137-218 (221)
75 2da7_A Zinc finger homeobox pr 99.2 2.3E-12 7.9E-17 99.1 1.7 46 213-262 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.1 4.4E-12 1.5E-16 119.0 0.5 57 204-264 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.1 3E-11 1E-15 96.5 2.3 61 210-271 11-71 (89)
78 2nzz_A Penetratin conjugated G 98.4 1.9E-08 6.4E-13 68.4 -0.9 22 250-271 1-22 (37)
79 2ys9_A Homeobox and leucine zi 88.9 0.13 4.3E-06 39.4 1.1 38 216-257 18-55 (70)
80 2glo_A Brinker CG9653-PA; prot 86.8 0.27 9.1E-06 34.6 1.8 46 208-258 3-48 (59)
81 2elh_A CG11849-PA, LD40883P; s 86.2 0.43 1.5E-05 36.1 2.7 46 203-257 15-60 (87)
82 1hlv_A CENP-B, major centromer 84.8 0.4 1.4E-05 38.0 2.1 48 207-261 4-51 (131)
83 1jko_C HIN recombinase, DNA-in 79.5 0.4 1.4E-05 31.3 0.1 42 210-260 5-46 (52)
84 1tc3_C Protein (TC3 transposas 78.7 1.1 3.6E-05 28.5 2.1 40 210-258 5-44 (51)
85 2jn6_A Protein CGL2762, transp 69.8 1.9 6.5E-05 32.6 1.8 43 208-257 3-45 (97)
86 2rn7_A IS629 ORFA; helix, all 64.8 3.6 0.00012 31.5 2.5 48 208-257 4-52 (108)
87 1iuf_A Centromere ABP1 protein 63.8 4.7 0.00016 33.1 3.1 48 205-259 6-60 (144)
88 2ofy_A Putative XRE-family tra 63.7 2.4 8E-05 30.9 1.2 49 208-260 3-52 (86)
89 2k27_A Paired box protein PAX- 60.0 11 0.00037 30.7 4.7 43 209-260 24-66 (159)
90 3c57_A Two component transcrip 57.6 2.4 8.2E-05 32.4 0.3 51 210-270 27-77 (95)
91 3hug_A RNA polymerase sigma fa 56.3 0.6 2.1E-05 35.3 -3.3 48 210-266 37-84 (92)
92 3bni_A Putative TETR-family tr 55.1 2.7 9.2E-05 35.4 0.2 28 235-262 63-90 (229)
93 2rnj_A Response regulator prot 54.9 2.7 9.1E-05 31.6 0.1 49 209-267 28-76 (91)
94 1je8_A Nitrate/nitrite respons 54.7 2 6.7E-05 32.0 -0.7 49 209-267 20-68 (82)
95 2rgt_A Fusion of LIM/homeobox 51.8 0.15 5.1E-06 43.1 -8.2 29 202-234 134-162 (169)
96 1p4w_A RCSB; solution structur 50.3 5.5 0.00019 31.1 1.3 49 208-266 32-80 (99)
97 3m20_A 4-oxalocrotonate tautom 48.6 25 0.00086 24.4 4.5 35 211-259 10-44 (62)
98 3i5g_B Myosin regulatory light 48.5 37 0.0013 27.2 6.1 44 207-250 6-50 (153)
99 1irz_A ARR10-B; helix-turn-hel 48.2 7.1 0.00024 29.0 1.5 61 204-266 3-63 (64)
100 1fse_A GERE; helix-turn-helix 47.5 3 0.0001 29.3 -0.7 49 208-266 9-57 (74)
101 2p7v_B Sigma-70, RNA polymeras 46.4 3.7 0.00013 29.0 -0.3 53 210-267 5-57 (68)
102 3fia_A Intersectin-1; EH 1 dom 45.8 8.6 0.00029 31.5 1.8 48 209-256 25-73 (121)
103 1pdn_C Protein (PRD paired); p 45.0 12 0.0004 28.3 2.4 41 210-259 17-57 (128)
104 1u78_A TC3 transposase, transp 44.8 6.8 0.00023 30.5 1.0 43 209-260 5-47 (141)
105 1fp0_A KAP-1 corepressor; PHD 44.6 17 0.00059 28.4 3.3 16 85-102 37-52 (88)
106 2lv7_A Calcium-binding protein 44.0 26 0.00088 26.7 4.2 50 207-256 26-78 (100)
107 2o8x_A Probable RNA polymerase 43.9 1.3 4.3E-05 31.0 -3.1 48 210-266 15-62 (70)
108 1k78_A Paired box protein PAX5 43.3 17 0.0006 28.9 3.3 42 209-259 31-72 (149)
109 3ej9_B Beta-subunit of trans-3 42.7 28 0.00094 26.5 4.0 33 212-258 12-44 (70)
110 1x3u_A Transcriptional regulat 41.7 3.1 0.00011 29.8 -1.3 48 210-267 16-63 (79)
111 1gyx_A YDCE, B1461, hypothetic 40.5 33 0.0011 24.8 4.1 41 210-264 11-52 (76)
112 3m21_A Probable tautomerase HP 39.9 37 0.0013 23.8 4.3 36 210-259 13-48 (67)
113 2iai_A Putative transcriptiona 39.7 9.5 0.00033 31.8 1.2 42 216-262 36-77 (230)
114 1l0o_C Sigma factor; bergerat 39.6 6.2 0.00021 33.0 0.0 44 211-263 199-242 (243)
115 2x48_A CAG38821; archeal virus 39.4 10 0.00035 25.4 1.1 39 210-257 13-53 (55)
116 3abf_A 4-oxalocrotonate tautom 39.2 40 0.0014 22.9 4.2 35 211-259 12-46 (64)
117 2r1j_L Repressor protein C2; p 39.1 12 0.0004 25.2 1.4 36 218-261 9-44 (68)
118 3fmy_A HTH-type transcriptiona 39.0 14 0.00048 26.3 1.9 41 209-260 9-49 (73)
119 1zug_A Phage 434 CRO protein; 38.1 14 0.00046 25.2 1.6 36 218-261 7-42 (71)
120 3mb2_B 4-oxalocrotonate tautom 37.6 43 0.0015 25.6 4.4 33 212-258 14-46 (72)
121 3q0w_A HTH-type transcriptiona 35.1 5.3 0.00018 33.6 -1.2 43 216-263 50-92 (236)
122 2hxo_A Putative TETR-family tr 34.7 22 0.00075 30.6 2.8 55 204-263 9-64 (237)
123 3kz3_A Repressor protein CI; f 34.7 6 0.00021 28.4 -0.8 47 211-261 2-51 (80)
124 3o9x_A Uncharacterized HTH-typ 33.2 14 0.00049 29.1 1.2 41 210-261 70-110 (133)
125 3mzy_A RNA polymerase sigma-H 33.1 5.7 0.00019 31.2 -1.2 47 210-266 109-155 (164)
126 1s7o_A Hypothetical UPF0122 pr 33.0 5 0.00017 32.0 -1.5 48 210-266 22-69 (113)
127 3aqt_A Bacterial regulatory pr 32.9 4.6 0.00016 34.3 -1.9 43 216-263 52-94 (245)
128 3clo_A Transcriptional regulat 32.7 9.7 0.00033 33.7 0.1 49 209-267 196-244 (258)
129 1r69_A Repressor protein CI; g 32.4 19 0.00065 24.3 1.6 24 238-261 17-40 (69)
130 2ao9_A Phage protein; structur 32.1 12 0.0004 32.2 0.5 51 208-259 21-72 (155)
131 1adr_A P22 C2 repressor; trans 32.1 18 0.0006 25.0 1.4 24 238-261 21-44 (76)
132 1tty_A Sigma-A, RNA polymerase 31.5 3.3 0.00011 31.0 -2.8 53 210-267 18-70 (87)
133 1otf_A 4-oxalocrotonate tautom 31.4 57 0.002 21.8 4.0 34 212-259 12-45 (62)
134 3mb2_A 4-oxalocrotonate tautom 31.4 61 0.0021 23.0 4.3 35 211-259 12-46 (72)
135 2lfw_A PHYR sigma-like domain; 31.0 4.8 0.00016 32.8 -2.0 49 210-267 93-141 (157)
136 1lmb_3 Protein (lambda repress 29.7 31 0.0011 24.9 2.5 23 238-260 33-55 (92)
137 3ulq_B Transcriptional regulat 29.2 12 0.00041 28.4 0.1 49 207-265 26-74 (90)
138 1y7y_A C.AHDI; helix-turn-heli 29.0 24 0.00081 24.1 1.7 36 217-260 16-51 (74)
139 2qko_A Possible transcriptiona 29.0 14 0.00048 30.1 0.5 43 216-263 34-76 (215)
140 3b7h_A Prophage LP1 protein 11 28.9 24 0.00082 24.5 1.7 36 217-260 10-45 (78)
141 1u78_A TC3 transposase, transp 28.7 42 0.0014 25.9 3.2 45 209-261 59-105 (141)
142 2opa_A Probable tautomerase YW 28.1 71 0.0024 21.3 4.0 34 212-259 12-45 (61)
143 3bs3_A Putative DNA-binding pr 27.4 23 0.00078 24.5 1.3 22 239-260 27-48 (76)
144 1nee_A EIF-2-beta, probable tr 27.4 17 0.00059 30.6 0.8 13 85-97 123-135 (138)
145 3i5g_C Myosin catalytic light 27.1 35 0.0012 27.6 2.6 42 209-250 1-45 (159)
146 2kpj_A SOS-response transcript 27.0 20 0.00068 26.5 1.0 23 238-260 25-47 (94)
147 1k81_A EIF-2-beta, probable tr 26.9 13 0.00043 24.4 -0.1 12 85-96 21-32 (36)
148 1xsv_A Hypothetical UPF0122 pr 26.8 3.4 0.00012 32.8 -3.5 48 210-266 25-72 (113)
149 2lhi_A Calmodulin, serine/thre 26.7 55 0.0019 26.7 3.8 43 208-250 2-45 (176)
150 3on2_A Probable transcriptiona 26.3 24 0.00082 27.7 1.4 42 216-262 18-59 (199)
151 3bdn_A Lambda repressor; repre 26.3 14 0.00049 31.5 0.1 50 210-260 6-55 (236)
152 2a6c_A Helix-turn-helix motif; 26.2 26 0.00089 25.3 1.5 23 238-260 34-56 (83)
153 1ku3_A Sigma factor SIGA; heli 26.2 3.9 0.00013 29.3 -3.1 50 210-264 10-59 (73)
154 3ej9_A Alpha-subunit of trans- 25.9 80 0.0027 22.9 4.2 34 212-259 13-46 (76)
155 2pmy_A RAS and EF-hand domain- 25.9 16 0.00055 26.5 0.3 51 207-257 17-68 (91)
156 1uiz_A MIF, macrophage migrati 25.8 77 0.0026 24.3 4.3 35 212-260 69-103 (115)
157 2ef8_A C.ECOT38IS, putative tr 25.6 29 0.001 24.4 1.7 36 217-260 13-48 (84)
158 3ry0_A Putative tautomerase; o 25.5 87 0.003 21.6 4.2 33 211-257 11-43 (65)
159 3mf7_A CIS-3-chloroacrylic aci 25.5 60 0.002 27.1 3.8 35 210-258 11-45 (149)
160 2k27_A Paired box protein PAX- 25.2 75 0.0025 25.5 4.3 50 208-261 81-137 (159)
161 1hfo_A Migration inhibitory fa 25.0 82 0.0028 24.0 4.3 35 212-260 68-102 (113)
162 2k9q_A Uncharacterized protein 25.0 28 0.00095 24.5 1.4 23 238-260 18-40 (77)
163 2q0o_A Probable transcriptiona 24.9 15 0.00051 31.8 -0.1 49 208-266 173-221 (236)
164 3cw2_K Translation initiation 24.2 18 0.00061 30.5 0.2 13 85-97 124-136 (139)
165 1b72_A Protein (homeobox prote 24.0 19 0.00065 27.6 0.4 22 244-265 2-23 (97)
166 1or7_A Sigma-24, RNA polymeras 23.6 4.5 0.00015 33.1 -3.5 30 237-266 158-187 (194)
167 2os5_A Acemif; macrophage migr 23.5 91 0.0031 24.1 4.3 35 212-260 69-103 (119)
168 2x4k_A 4-oxalocrotonate tautom 22.9 1E+02 0.0035 20.3 4.0 33 212-258 15-47 (63)
169 3fwb_A Cell division control p 22.6 1.7E+02 0.0058 22.0 5.7 45 205-249 11-56 (161)
170 2d74_B Translation initiation 22.5 24 0.00082 30.1 0.7 14 84-97 124-137 (148)
171 2fnf_X Putative RAS effector N 22.5 37 0.0013 25.1 1.7 30 64-101 36-67 (72)
172 2jpf_A Hypothetical protein; a 22.2 10 0.00035 30.7 -1.5 10 251-260 53-62 (127)
173 3dcf_A Transcriptional regulat 22.1 15 0.00051 29.5 -0.6 41 216-261 37-77 (218)
174 2g2k_A EIF-5, eukaryotic trans 22.0 24 0.0008 30.9 0.6 16 84-99 118-133 (170)
175 3gj5_B Nuclear pore complex pr 21.8 31 0.001 22.6 1.0 11 83-93 19-29 (34)
176 2xi8_A Putative transcription 21.5 18 0.0006 24.2 -0.3 23 238-260 17-39 (66)
177 2jtd_A Myomesin-1, skelemin; i 21.5 0.63 2.2E-05 39.6 -9.1 45 210-259 18-62 (142)
178 3him_A Probable transcriptiona 21.5 25 0.00085 27.9 0.6 44 215-263 21-64 (211)
179 2np3_A Putative TETR-family re 21.3 22 0.00075 28.9 0.2 32 232-263 47-78 (212)
180 2ict_A Antitoxin HIGA; helix-t 21.1 33 0.0011 25.1 1.2 20 239-258 25-44 (94)
181 2guh_A Putative TETR-family tr 21.0 11 0.00037 31.5 -1.7 43 216-263 45-87 (214)
182 1k78_A Paired box protein PAX5 20.9 1.5E+02 0.005 23.3 5.1 45 208-259 88-142 (149)
183 1rfh_A RAS association (ralgds 20.7 28 0.00094 24.6 0.6 27 64-98 23-51 (59)
184 1rp3_A RNA polymerase sigma fa 20.6 6.1 0.00021 33.2 -3.4 48 210-266 187-234 (239)
185 2e9h_A EIF-5, eukaryotic trans 20.5 24 0.00081 30.5 0.3 16 84-99 125-140 (157)
186 2jpc_A SSRB; DNA binding prote 20.5 9.6 0.00033 25.8 -1.8 29 239-267 17-45 (61)
187 3c07_A Putative TETR-family tr 20.1 13 0.00044 32.6 -1.5 42 217-263 48-89 (273)
188 1l3l_A Transcriptional activat 20.1 21 0.0007 30.9 -0.2 49 208-266 171-219 (234)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=2.2e-23 Score=162.36 Aligned_cols=67 Identities=51% Similarity=0.966 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
...++||.||.||.+|++.|+.+|+++|||++||+..+|++||.+|||++.+|||||||||+|+|+.
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 3457899999999999999999999999999999999999999999999999999999999999864
No 2
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=3e-23 Score=161.97 Aligned_cols=68 Identities=56% Similarity=0.978 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 199 SSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 199 ~~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
+...++||.||.||.+|++.|+.|.+++||+++||+..+|++||.+|||++.+|||||||||+|+|+.
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 44567899999999999999997777799999999999999999999999999999999999999874
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-20 Score=141.16 Aligned_cols=67 Identities=25% Similarity=0.417 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSI 271 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~ 271 (314)
..++||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAI----NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3467999999999999999999999 999999999999999999999999999999999999876544
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=4.4e-20 Score=141.50 Aligned_cols=67 Identities=25% Similarity=0.386 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 198 NSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 198 ~~~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
+....++||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+..
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLL----DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 3445678999999999999999999999 999999999999999999999999999999999999864
No 5
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.4e-19 Score=139.52 Aligned_cols=68 Identities=16% Similarity=0.362 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccccC
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSIN 272 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~~ 272 (314)
..++||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+.+...+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAK----TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 3577899999999999999999999 9999999999999999999999999999999999998866553
No 6
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-20 Score=142.31 Aligned_cols=70 Identities=11% Similarity=0.238 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
...++||.||.||.+|+..|+.+|+.-+|..+||+..++++||.+|||++.+|+|||||||+|+||....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 3457899999999999999999999966666999999999999999999999999999999999986533
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=138.49 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 199 SSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 199 ~~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
....++||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||...
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEK----QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345677899999999999999999999 999999999999999999999999999999999999864
No 8
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=137.87 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 199 SSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 199 ~~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
....++||.||.||.+|+..|+.+|+. ++||+..++.+||.+|||++.+|+|||||||+|+||+.+.
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQR----QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999 9999999999999999999999999999999999998753
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=2.2e-19 Score=135.23 Aligned_cols=64 Identities=9% Similarity=0.237 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
..+.||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAA----NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 3567899999999999999999999 999999999999999999999999999999999999764
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-19 Score=133.93 Aligned_cols=65 Identities=20% Similarity=0.371 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
...++||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDA----NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 34567899999999999999999999 999999999999999999999999999999999999864
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-19 Score=133.86 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
+..||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQE----TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 467899999999999999999999 999999999999999999999999999999999998764
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-19 Score=133.72 Aligned_cols=64 Identities=11% Similarity=0.281 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
....||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQK----TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 3467899999999999999999999 999999999999999999999999999999999999764
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-19 Score=133.99 Aligned_cols=64 Identities=20% Similarity=0.390 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
..++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDI----NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 3567899999999999999999999 999999999999999999999999999999999999875
No 14
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=6.1e-19 Score=129.72 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
++||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK----QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 56899999999999999999999 99999999999999999999999999999999999864
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.1e-19 Score=137.08 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
..+||.||.||.+|+..|+.+|+. ++||+..++.+||.+|||++.+|+|||||||+|+||+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFER----THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 467899999999999999999999 99999999999999999999999999999999999987544
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1e-18 Score=131.57 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
...||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFET----QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 466889999999999999999999 999999999999999999999999999999999998764
No 17
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.73 E-value=9.5e-19 Score=134.13 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
...++||.||.||.+|+..|+.+|+. ++||+..++.+||.+|||++.+|+|||||||+|+||....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQ----QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 34567889999999999999999999 9999999999999999999999999999999999987643
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=7.9e-19 Score=129.69 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=56.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
++||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF----NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 46899999999999999999999 99999999999999999999999999999999999875
No 19
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-18 Score=131.47 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccccC
Q 046396 205 KRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSIN 272 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~~ 272 (314)
.++|+.||.+|+..|+.+|+. ++||+..++.+||.+|||++.+|+|||||||+|+||+.....+
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 71 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ----NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKSG 71 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcccC
Confidence 356778999999999999999 9999999999999999999999999999999999999876554
No 20
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=1.9e-18 Score=128.47 Aligned_cols=62 Identities=19% Similarity=0.388 Sum_probs=59.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA----NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46899999999999999999999 999999999999999999999999999999999999864
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=1.2e-18 Score=127.78 Aligned_cols=60 Identities=25% Similarity=0.434 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.+||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE----NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 36899999999999999999999 9999999999999999999999999999999999874
No 22
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-18 Score=129.88 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
.+++||.||.||.+|+..|+.+|+. ++||+..++.+||.+|||++.+|+|||||||+|+||+....
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQK----THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 3567899999999999999999999 99999999999999999999999999999999999987653
No 23
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=131.01 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
..++.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+....
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCR----NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH----SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 44667999999999999999999 99999999999999999999999999999999999987543
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=3.9e-18 Score=129.68 Aligned_cols=64 Identities=11% Similarity=0.199 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
.+.||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYAT----NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHH----TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 467899999999999999999999 9999999999999999999999999999999999998644
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=1.5e-18 Score=130.27 Aligned_cols=63 Identities=14% Similarity=0.282 Sum_probs=59.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
+||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 5899999999999999999999 99999999999999999999999999999999999987543
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=1.8e-18 Score=134.09 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=55.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
.+||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+.+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT----NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcccCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 56889999999999999999999 999999999999999999999999999999999999864
No 27
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=3.1e-18 Score=131.26 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
.....||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||...
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLF----NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999 999999999999999999999999999999999998764
No 28
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.70 E-value=2e-18 Score=135.35 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
...||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 357899999999999999999999 99999999999999999999999999999999999875
No 29
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=4.1e-18 Score=135.54 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSI 271 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~ 271 (314)
...++||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||+.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHK----QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 34567899999999999999999999 999999999999999999999999999999999999875543
No 30
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.2e-18 Score=123.99 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccc
Q 046396 205 KRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 265 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kK 265 (314)
||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ----KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 689999999999999999999 999999999999999999999999999999999986
No 31
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=2.7e-18 Score=128.72 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=59.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
+||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+|++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ----GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 5899999999999999999999 99999999999999999999999999999999999987544
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.70 E-value=1.1e-18 Score=130.67 Aligned_cols=64 Identities=16% Similarity=0.328 Sum_probs=60.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
++||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||+....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR----NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT----CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 57899999999999999999999 99999999999999999999999999999999999987643
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=3.4e-18 Score=132.00 Aligned_cols=65 Identities=17% Similarity=0.344 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
...++||.||.||.+|+..|+.+|+. ++||+..++.+||.+|||++.+|+|||||||+|+||+..
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFER----TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34577899999999999999999999 999999999999999999999999999999999998763
No 34
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=4.1e-18 Score=135.89 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 199 SSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 199 ~~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
.+....+|.||.||.+|+..|+.+|++ ++||+..++++||.+|||++.+|||||||||+|+||+..
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVR----TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 344566789999999999999999999 999999999999999999999999999999999999763
No 35
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=4e-18 Score=124.57 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 205 KRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||+|+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK----ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 689999999999999999999 9999999999999999999999999999999999886
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=5.2e-18 Score=127.18 Aligned_cols=63 Identities=14% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
+||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ----QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 5889999999999999999999 99999999999999999999999999999999999987543
No 37
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=8.5e-18 Score=133.68 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhC---------------CCCCceeeccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVG---------------VSRRVFKVWMHNNKNASGR 265 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiG---------------l~~~vVKVWFQNRRaK~kK 265 (314)
..++||.||.||.+|+..|+.+|+. ++||+..++++||.+++ |++.+|+|||||||+|+||
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~----~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE----NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999 99999999999999999 9999999999999999999
Q ss_pred cccc
Q 046396 266 KDQR 269 (314)
Q Consensus 266 k~~~ 269 (314)
+...
T Consensus 80 ~~~~ 83 (95)
T 2cuf_A 80 RANI 83 (95)
T ss_dssp HHHC
T ss_pred Hhhc
Confidence 8865
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.68 E-value=6.7e-18 Score=121.47 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASG 264 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~k 264 (314)
+||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ----QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 5789999999999999999999 99999999999999999999999999999999975
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=6.4e-18 Score=126.02 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
.||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRV----NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 3789999999999999999999 9999999999999999999999999999999999998754
No 40
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=9.8e-18 Score=128.59 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 265 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kK 265 (314)
+.+.+||.||.|+.+|+..|+.+|+.| +.|||..+|++|+.++||++++|||||||+|.-.+-
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~---~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDV---GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 345789999999999999999999986 699999999999999999999999999999986553
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-17 Score=123.91 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
..++.||.||.+|+..|+.+|++ ++||+..++++||.++||++.+|||||||||+|+||++.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLK----NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 34789999999999999999999 999999999999999999999999999999999999764
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=7.7e-18 Score=134.38 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
...||.||.||.+|+..|+.+|+. ++||+..++++||.+|||++.+|+|||||||+|+||+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF----NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 467889999999999999999999 9999999999999999999999999999999999998753
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=1.9e-17 Score=125.62 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHHH-hcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 205 KRSRTKFTQEQKEKMLSFAE-RLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~Fe-klGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
++.||.||.+|+..|+.+|+ . ++||+..++.+||.++||++.+|+|||||||+|+||+...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~----~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV----NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT----TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 56899999999999999999 7 8999999999999999999999999999999999998744
No 44
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.66 E-value=1.4e-17 Score=121.76 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 207 SRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 207 ~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||||+|+||+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR----THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999 999999999999999999999999999999999999764
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.66 E-value=1.5e-17 Score=121.51 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASG 264 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~k 264 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++++||.++||++.+|+|||||+|+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh----CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 357889999999999999999999 99999999999999999999999999999999975
No 46
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=2.3e-17 Score=124.73 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHH-hcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 205 KRSRTKFTQEQKEKMLSFAE-RLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~Fe-klGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
.+.||.||.+|+..|+.+|+ . ++||+..++++||.++||++.+|+|||||||+|+||+....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV----NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCC
Confidence 46889999999999999999 6 89999999999999999999999999999999999987443
No 47
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=5.9e-17 Score=129.16 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSI 271 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~ 271 (314)
.||.+||..|+..|.. ++||+..+|++||.+|||++.+|||||||||+||||+++...
T Consensus 17 ~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN----SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 7899999999999999 999999999999999999999999999999999999775444
No 48
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.7e-17 Score=126.76 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccccC
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSIN 272 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~~ 272 (314)
+.+||.+|+..|+.+|++ ++||+..+|++||.+|||++.+|+|||||||+|+|+++....+
T Consensus 17 ~k~~t~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLK----SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred cccCCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 345999999999999999 9999999999999999999999999999999999998866543
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=2.6e-17 Score=121.49 Aligned_cols=60 Identities=8% Similarity=0.199 Sum_probs=57.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---HhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFA---ERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~F---eklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
..+|.||.||.+|+..|+.+| .. ++||+..++++||.++||++.+|+|||||+|+|+||+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~----~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLS----NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTT----SCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHccc----CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 458899999999999999999 77 9999999999999999999999999999999999984
No 50
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=4e-17 Score=126.98 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 206 RSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 206 R~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
+.|++||.+|+..|+..|+. ++||+..+|++||.++||++.+|||||||+|+|+|+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~----~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ----CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 35667999999999999999 9999999999999999999999999999999999988644
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=8.5e-17 Score=121.74 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQ 268 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~ 268 (314)
..+.||.||.|+.+|+..|+.+|+. -+.++||+..++++||.++||++.+|+|||||+|+|+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQ-HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 3467889999999999999999974 233799999999999999999999999999999999998764
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=124.53 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSI 271 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~ 271 (314)
..++||.|+.|+.+|+..|+.+|.. -+.++||+..++++||.++||++.+|+|||||+|+|+|+......
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~-~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYK-HRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH-TTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 3567889999999999999999987 233599999999999999999999999999999999988765444
No 53
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=3.9e-17 Score=118.12 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
|.||.+|+..|+..|+. ++||+..++.+||.++||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR----QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh----cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 68999999999999999 9999999999999999999999999999999999986
No 54
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.63 E-value=6.3e-17 Score=139.93 Aligned_cols=63 Identities=11% Similarity=0.250 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
..++||.||.||.+|+..|+.+|++ ++||+..+|++||.++||++.+|||||||||+|+||+.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFME----NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 4578999999999999999999999 99999999999999999999999999999999999863
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.62 E-value=3e-17 Score=127.90 Aligned_cols=63 Identities=13% Similarity=0.273 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFA---ERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~F---eklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
.||.||.||.+|+..|+.+| .. ++||+..++++||.++||++.+|+|||||+|+|+||+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLS----NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTT----SCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 37899999999999999999 77 99999999999999999999999999999999999987543
No 56
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.62 E-value=7.1e-17 Score=122.18 Aligned_cols=62 Identities=13% Similarity=0.292 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFA---ERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~F---eklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
.||.||.||.+|+..|+.+| .. ++||+..++.+||.++||++.+|+|||||+|+|+|++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~----~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLS----NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTT----SCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhcc----CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 37899999999999999999 77 9999999999999999999999999999999999987754
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=1.1e-16 Score=136.79 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
..++||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGE----HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 4567889999999999999999999 99999999999999999999999999999999999874
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-16 Score=130.75 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHh---------------------CCCCCceeeccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEV---------------------GVSRRVFKVWMHNN 259 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~ei---------------------Gl~~~vVKVWFQNR 259 (314)
..++||.||.|+.+|+..|+.+|++ ++||+..+|++||.++ .|++.+|+||||||
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~----~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 4578999999999999999999999 9999999999999999 79999999999999
Q ss_pred cccccccccccc
Q 046396 260 KNASGRKDQRSI 271 (314)
Q Consensus 260 RaK~kKk~~~~~ 271 (314)
|+++|++.....
T Consensus 79 R~k~kr~~~~~~ 90 (102)
T 2da6_A 79 RKEEAFRQKLAM 90 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhHhhh
Confidence 999999886655
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.61 E-value=1e-16 Score=139.64 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQR 269 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~ 269 (314)
..++||.||.||.+|+..|+.+|++ ++||+..+|.+||.++||++.+|||||||||+|+||+...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLK----CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 4577889999999999999999999 9999999999999999999999999999999999998754
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=135.22 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 265 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kK 265 (314)
...++||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEK----NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44678899999999999999999999 999999999999999999999999999999999987
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.59 E-value=2.3e-16 Score=127.73 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHH------------------hC---CCCCceeeccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSE------------------VG---VSRRVFKVWMHNN 259 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~e------------------iG---l~~~vVKVWFQNR 259 (314)
..++||.||.||.+|+..|+.+|+. ++||+..+|++||.+ || |++.+|+||||||
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~----~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNR 81 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 81 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHH
Confidence 3567899999999999999999999 999999999999999 88 9999999999999
Q ss_pred cccccccccccc
Q 046396 260 KNASGRKDQRSI 271 (314)
Q Consensus 260 RaK~kKk~~~~~ 271 (314)
|++++++.....
T Consensus 82 R~k~k~k~~~~~ 93 (99)
T 1lfb_A 82 RKEEAFRHKLAM 93 (99)
T ss_dssp HHTTSCCC----
T ss_pred HHHHHHhchhhh
Confidence 999988875543
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.57 E-value=6.8e-16 Score=120.71 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 265 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kK 265 (314)
..++|.||.||.+|+..|+.+|.. .+.++||+..++++||.++||++.+|+|||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHH-TTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 356777999999999999999986 777899999999999999999999999999999999874
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=2.9e-16 Score=119.82 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 205 KRSRTKFTQEQKEKMLSFA-ERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~F-eklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
.+.|+.++.+|+..||.+| +. ++||+..++++||.++||++.+|||||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~----~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV----TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4556667899999999999 99 99999999999999999999999999999999999865
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.56 E-value=1e-15 Score=111.52 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=54.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 207 SRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 207 ~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
+|+.||.+|+..|+.+|.. .+.++||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 1 rr~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999996 5557999999999999999999999999999999999875
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.55 E-value=1.4e-15 Score=118.21 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
+++.|+.||.+|+..|+.+|.. .+.++||+..++++||.++||++.+|+|||||||+|+|+..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~-h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH-TSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh-hCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 4556777999999999999995 56689999999999999999999999999999999999875
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=115.83 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
.+|.+|+..|+.+|++ ++||+..+|.+||.++||++.+|||||||||+|+||+....
T Consensus 10 ~~t~~ql~~LE~~F~~----~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH----QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred cCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 5799999999999999 99999999999999999999999999999999999987554
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=1.4e-15 Score=131.17 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 201 DNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 201 ~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
..++||.||.||.+|+..|+.+|+. ++||+..+|++||.++||++.+|+|||||||+|+|+.....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE----NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 3467899999999999999999999 99999999999999999999999999999999999876443
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.53 E-value=8.9e-16 Score=132.24 Aligned_cols=61 Identities=16% Similarity=0.384 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.++||.||.||.+|+..|+.+|+. ++||+..++.+||.++||++.+|||||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLK----SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTT----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 467889999999999999999999 9999999999999999999999999999999999984
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.8e-15 Score=110.82 Aligned_cols=56 Identities=7% Similarity=0.073 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
+..++.+|+..|+.+|++ ++||+..+|.+||.++||++.+|||||||||+|.++.+
T Consensus 7 ~~~p~~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL----NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCccHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 344579999999999999 99999999999999999999999999999999988743
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.47 E-value=6.2e-15 Score=112.01 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
|.+|+..|+..|.+ ++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 12 ~~~Ql~~LE~~F~~----~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQ----SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHG----GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 78999999999999 9999999999999999999999999999999999874
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=9.9e-15 Score=110.06 Aligned_cols=51 Identities=10% Similarity=0.214 Sum_probs=46.8
Q ss_pred HHHHHHHHHHH-HhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 213 QEQKEKMLSFA-ERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 213 ~eQl~~Le~~F-eklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
.+|+..||.+| .. ++||+..+|.+||.+|||++++|||||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~----~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAI----TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTT----CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 45899999999 56 78999999999999999999999999999999998754
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=6.6e-14 Score=105.16 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
+|+.+|+..|+.+|.. -+.++||+..++++||.++||++.+|+|||||+|+|+||.....
T Consensus 4 ~f~~~~~~~L~~~f~~-h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQ-HLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 7999999999999991 12299999999999999999999999999999999999876443
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.36 E-value=6.2e-14 Score=125.69 Aligned_cols=63 Identities=14% Similarity=0.283 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhC---------------------CCCCceeecccc
Q 046396 200 SDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVG---------------------VSRRVFKVWMHN 258 (314)
Q Consensus 200 ~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiG---------------------l~~~vVKVWFQN 258 (314)
...++||.||.|+..|+..|+.+|+. ++||+..+|++||.+++ |++.+|+|||||
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~----~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqN 186 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFAN 186 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHH----HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchh
Confidence 34577899999999999999999999 99999999999999999 999999999999
Q ss_pred cccccccc
Q 046396 259 NKNASGRK 266 (314)
Q Consensus 259 RRaK~kKk 266 (314)
||++.+.+
T Consensus 187 RR~~~k~~ 194 (194)
T 1ic8_A 187 RRKEEAFR 194 (194)
T ss_dssp HHHHCC--
T ss_pred hhhhhhcC
Confidence 99998754
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=118.65 Aligned_cols=61 Identities=13% Similarity=0.293 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhC---------------------CCCCceeeccc
Q 046396 199 SSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVG---------------------VSRRVFKVWMH 257 (314)
Q Consensus 199 ~~~~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiG---------------------l~~~vVKVWFQ 257 (314)
....++||.||+|+.+|+..|+.+|++ ++||+..+|++|+.+++ |++.+|+||||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~----~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFq 212 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFA 212 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhH
Confidence 345678999999999999999999999 99999999999999988 88999999999
Q ss_pred cccccc
Q 046396 258 NNKNAS 263 (314)
Q Consensus 258 NRRaK~ 263 (314)
|||+..
T Consensus 213 NRR~~~ 218 (221)
T 2h8r_A 213 NRRKEE 218 (221)
T ss_dssp HHHTTC
T ss_pred Hhhhhh
Confidence 999875
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.3e-12 Score=99.09 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccc
Q 046396 213 QEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNA 262 (314)
Q Consensus 213 ~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK 262 (314)
.+|+..|+.+|.. +++|+..++++||..+||+++||||||||||+.
T Consensus 14 k~ql~~Lk~yF~~----n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM----NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5799999999999 999999999999999999999999999999984
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.15 E-value=4.4e-12 Score=119.03 Aligned_cols=57 Identities=12% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASG 264 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~k 264 (314)
.++.|+.|+.+|+..|+..|+. ++||+..+|++||.++||++++|||||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~----~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3577899999999999999999 99999999999999999999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.07 E-value=3e-11 Score=96.49 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRSI 271 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~~ 271 (314)
.|+.+++..|+.+|.. -+.++||+..++++||.++||++.+|++||||+|.|+++......
T Consensus 11 ~l~~~~~~iL~~W~~~-h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 11 MLPKESVQILRDWLYE-HRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCHHHHHHHHHHHHH-TSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 5899999999999975 355899999999999999999999999999999999998764443
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.42 E-value=1.9e-08 Score=68.45 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.0
Q ss_pred Cceeeccccccccccccccccc
Q 046396 250 RVFKVWMHNNKNASGRKDQRSI 271 (314)
Q Consensus 250 ~vVKVWFQNRRaK~kKk~~~~~ 271 (314)
++|||||||||+||||++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999986643
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.88 E-value=0.13 Score=39.39 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMH 257 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQ 257 (314)
.+.|+++|.. -+...+...+.||.+.+|+-.+||-||-
T Consensus 18 ~e~L~~Yy~~----hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAA----HQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHH----TCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHH----hcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 3679999999 8889999999999999999999999994
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=86.83 E-value=0.27 Score=34.60 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHN 258 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQN 258 (314)
|.+||.+++..+..+++. .........++|.++||+..+|.-|...
T Consensus 3 r~~ys~efK~~~~~~~~~-----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 457999999888666554 2211112668999999999999999753
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.16 E-value=0.43 Score=36.10 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=35.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccc
Q 046396 203 GKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMH 257 (314)
Q Consensus 203 ~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQ 257 (314)
++|+.|.+|+.+++..+...++. | . ...++|+++||++.+|.-|..
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~~-g----~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIHD-G----E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHHH-T----C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHC-C----C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34556779999998877777754 2 1 356889999999999999984
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=84.82 E-value=0.4 Score=37.98 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccc
Q 046396 207 SRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 207 ~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
.|..||.+++..+...++. .... ...++|+++||++.+|.-|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~----~g~~---~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE----NPDL---RKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH----CTTS---CHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHH----CCCC---cHHHHHHHhCCCHHHHHHHHhchhh
Confidence 5778999999999888865 3333 2347899999999999999977655
No 83
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=79.46 E-value=0.4 Score=31.28 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
+|+.+++..+..+++. |+ ...++|..+||++.+|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~-g~--------s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEK-GH--------PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHT-TC--------CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 5677787777766654 32 356899999999999999997544
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=78.75 E-value=1.1 Score=28.54 Aligned_cols=40 Identities=8% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHN 258 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQN 258 (314)
.++.+++..+..++.. |+ ...++|+.+||++.+|+-|++.
T Consensus 5 ~l~~~~~~~i~~~~~~-g~--------s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV--------SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC--------CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHhh
Confidence 5788888777766654 32 3568999999999999999864
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=69.83 E-value=1.9 Score=32.60 Aligned_cols=43 Identities=19% Similarity=0.445 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMH 257 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQ 257 (314)
|.+||.+++..+...+.. . ......++|.++||+..+|.-|..
T Consensus 3 r~~ys~e~k~~~v~~~~~----~---~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYEN----S---DGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTT----G---GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH----c---CCChHHHHHHHHCcCHHHHHHHHH
Confidence 457999999887766643 1 012467899999999999999985
No 86
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=64.81 E-value=3.6 Score=31.51 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCC-HHHHHHHHHHhCCCCCceeeccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAE-EKLTQDFCSEVGVSRRVFKVWMH 257 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd-~~~r~eLa~eiGl~~~vVKVWFQ 257 (314)
|.+||.+++..+...+..-|+ .+.. .....++|.++||+..+|.-|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~--~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQG--EYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccc--ccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 457999999887766643110 0111 24678999999999999999975
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=63.77 E-value=4.7 Score=33.11 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=36.7
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCcCCCCCHHHHHHHHH----Hh--CCCCCceeeccccc
Q 046396 205 KRSRTKFTQEQKEKMLSFA-ERLGWKMNRAEEKLTQDFCS----EV--GVSRRVFKVWMHNN 259 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~F-eklGWr~~~pd~~~r~eLa~----ei--Gl~~~vVKVWFQNR 259 (314)
++.|..+|-+|+..|..++ +. +..... .+||. +. +|++.+|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~----~~~~~q---~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL----QNRSGQ---QDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS----SSCCCH---HHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh----CCCCCH---HHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6789999999999999999 55 444433 33444 77 89999999998653
No 88
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=63.74 E-value=2.4 Score=30.85 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLG-WKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklG-Wr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
|+.++.++.+.+..+-++|- +|... ...+||..+||+..+|.-|..+++
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~----sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM----SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 67788888877766655532 23333 456999999999999999998765
No 89
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=59.96 E-value=11 Score=30.68 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..|+.+++..+..++.. || ...++|+.+||++.+|.-|++..+
T Consensus 24 ~~~s~e~r~~ii~l~~~-G~--------s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQ-GV--------RPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CSSCHHHHHHHHHHHHH-TC--------CHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46899999998888864 43 345789999999999999997543
No 90
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.57 E-value=2.4 Score=32.38 Aligned_cols=51 Identities=8% Similarity=0.147 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKDQRS 270 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~~~~ 270 (314)
.++..|++.|.-+++- + ...++|..+|++..+|+.++++-+.|.+...+..
T Consensus 27 ~Lt~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 77 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG--L--------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 77 (95)
T ss_dssp CCCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 5899999999876433 1 3478999999999999999998888877765443
No 91
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.33 E-value=0.6 Score=35.25 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.++..|.+.|.-.|-. .....++|..+||+..+|+.+++.-|.++|+.
T Consensus 37 ~L~~~~r~vl~l~~~~---------g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR---------GWSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTS---------CCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3566777766543322 12457999999999999999998777777654
No 92
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=55.05 E-value=2.7 Score=35.36 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCceeecccccccc
Q 046396 235 EKLTQDFCSEVGVSRRVFKVWMHNNKNA 262 (314)
Q Consensus 235 ~~~r~eLa~eiGl~~~vVKVWFQNRRaK 262 (314)
.....++|++.||++.+|-.+|.|+-.-
T Consensus 63 ~~tv~~IA~~AGvs~~t~Y~~F~sKe~L 90 (229)
T 3bni_A 63 ALSTRAVALRADVPIGSVYRFFGNKRQM 90 (229)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred hccHHHHHHHHCCCchhHHHHcCCHHHH
Confidence 3467789999999999999999986543
No 93
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=54.90 E-value=2.7 Score=31.59 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
..++..|++.|.-+++- + ...++|..+|++..+|+.++++-+.|.+...
T Consensus 28 ~~Lt~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKG--Y--------SNQEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GGCCSHHHHHHHHHHTT--C--------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred hcCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 36899999998875433 2 2348899999999999999988777776654
No 94
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=54.65 E-value=2 Score=31.99 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
..+|..|++.|.-+++- ....++|..+|++..+|+.+.++-+.|.+...
T Consensus 20 ~~Lt~~e~~vl~l~~~g----------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG----------LPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GGSCHHHHHHHHHHTTT----------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 35899999988764322 24568999999999999999988777776654
No 95
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=51.84 E-value=0.15 Score=43.10 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcCCCCC
Q 046396 202 NGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAE 234 (314)
Q Consensus 202 ~~kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd 234 (314)
.+.||.||.|+.+|++.|+..|+. ++|++
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~----~~~~~ 162 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQA----NPVEV 162 (169)
T ss_dssp -------EEEECCCCEECCSSCCC----CCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhC----CCCcc
Confidence 356899999999999999999998 88875
No 96
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=50.35 E-value=5.5 Score=31.11 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
...+|+.|++.|.-+++- + ...++|..+||++.+|+.++++-+.|+.-.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G--~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG--F--------LVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT--C--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 346899999999876643 2 337999999999999999998766665543
No 97
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=48.64 E-value=25 Score=24.43 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 211 FTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 211 FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
.|.+|+++|-+..-. .++..+|++...|.|.|+..
T Consensus 10 rt~eqK~~L~~~it~--------------~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 10 LDVGKKREFVERLTS--------------VAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHHTCCTTSCEEEEECC
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHhCcCcceEEEEEEEe
Confidence 489999888655444 78889999999999988754
No 98
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=48.53 E-value=37 Score=27.23 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCc-CCCCCHHHHHHHHHHhCCCCC
Q 046396 207 SRTKFTQEQKEKMLSFAERLGWK-MNRAEEKLTQDFCSEVGVSRR 250 (314)
Q Consensus 207 ~RT~FT~eQl~~Le~~FeklGWr-~~~pd~~~r~eLa~eiGl~~~ 250 (314)
+|..+|++|++.|+..|..+..- .-+.+..+...+.+.+|+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 45689999999999999875432 345788888888888887654
No 99
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=48.24 E-value=7.1 Score=29.04 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 204 KKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 204 kKR~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.|+.|-..|+|.-+......+.|| ........+.++...-||+...|+.=.|.-|.+.+|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG--~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG--VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC--TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC--CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 466778899999999999999999 3444455556666666889999999888888776653
No 100
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.55 E-value=3 Score=29.33 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
-..+++.|++.|..+++- + ...++|..+|++..+|+.+++.-+.|.+..
T Consensus 9 ~~~L~~~e~~il~~~~~g--~--------s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 9 KPLLTKREREVFELLVQD--K--------TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCHHHHHHHHHHTTT--C--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHcC--C--------CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 346899999998775332 1 456899999999999999998766666554
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=46.45 E-value=3.7 Score=28.99 Aligned_cols=53 Identities=6% Similarity=-0.055 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
.+++.|.+.|...|-..| -......++|..+|+++.+|+.+...-+.|.++.-
T Consensus 5 ~L~~~er~il~l~~~l~~-----~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDM-----NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTS-----SSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 467888888876651100 11234578999999999999999987777776543
No 102
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=45.81 E-value=8.6 Score=31.55 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCcee-ecc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFK-VWM 256 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVK-VWF 256 (314)
-.+|.+++.++++.|..+.=..-+.+..+...+..+.+|+..++. ||-
T Consensus 25 W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~ 73 (121)
T 3fia_A 25 WAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWA 73 (121)
T ss_dssp SCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 358999999999999997644556677888888888899887765 563
No 103
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=44.97 E-value=12 Score=28.27 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
.|+.+++..+..++.. ||. ..++|..+||++.+|.-|+...
T Consensus 17 ~~s~~~r~~i~~~~~~-g~s--------~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GIR--------PCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TCC--------HHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CCC--------HHHHHHHHCcCHHHHHHHHHHH
Confidence 5899999998888754 432 4678999999999999998743
No 104
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=44.78 E-value=6.8 Score=30.54 Aligned_cols=43 Identities=7% Similarity=0.230 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..++.++...+..+++. || ...++|+.+||++.+|.-|++..+
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~--------s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV--------SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC--------CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHHccc
Confidence 46899999988888754 43 246889999999999999997543
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.55 E-value=17 Score=28.39 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=12.1
Q ss_pred CccccccCCccccccCCC
Q 046396 85 SLNCAACGCHRNFHRRDP 102 (314)
Q Consensus 85 ~l~caac~chrnfhr~~~ 102 (314)
-|.|. +|.|.||..=.
T Consensus 37 LL~CD--~C~~~fH~~Cl 52 (88)
T 1fp0_A 37 LVMCN--QCEFCFHLDCH 52 (88)
T ss_dssp CEECT--TSSCEECTTSS
T ss_pred EEECC--CCCCceecccC
Confidence 56666 68999998754
No 106
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=43.97 E-value=26 Score=26.66 Aligned_cols=50 Identities=6% Similarity=0.009 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CcCCCCCHHHHHHHHHHhCC--CCCceeecc
Q 046396 207 SRTKFTQEQKEKMLSFAERLG-WKMNRAEEKLTQDFCSEVGV--SRRVFKVWM 256 (314)
Q Consensus 207 ~RT~FT~eQl~~Le~~FeklG-Wr~~~pd~~~r~eLa~eiGl--~~~vVKVWF 256 (314)
....++.+|++.|+..|..+. -+.-+.+..+...+.+.+|+ +...|+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445789999999999999854 23456888999999999885 445555555
No 107
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=43.94 E-value=1.3 Score=30.96 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.+++.|.+.|...|-. | ....++|..+|+++.+|+.|.+.-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~-g--------~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL-G--------LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTS-C--------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4778888888765432 1 2356899999999999999998777766654
No 108
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=43.32 E-value=17 Score=28.92 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
..|+.+++..+...+.. ||. ..++|+.+||++.+|.-|+...
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~s--------~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GVR--------PCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TCC--------HHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CCC--------HHHHHHHHCcCHHHHHHHHHHH
Confidence 36899999998888853 542 4678999999999999998643
No 109
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=42.70 E-value=28 Score=26.47 Aligned_cols=33 Identities=9% Similarity=0.250 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHN 258 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQN 258 (314)
|.|||++|-+. .-+..++.||.+...|+||.+-
T Consensus 12 T~EQK~~lI~~--------------VT~a~~eslgap~esVrVlItE 44 (70)
T 3ej9_B 12 SVARKQQLIRD--------------VIDVTNKSIGSDPKIINVLLVE 44 (70)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEE
T ss_pred CHHHHHHHHHH--------------HHHHHHHHcCCChHHEEEEeee
Confidence 78999988533 3447899999999999999973
No 110
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.68 E-value=3.1 Score=29.76 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
.+++.|++.|.-+++- + ...++|..+|++..+|+.++..-+.|.+...
T Consensus 16 ~L~~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 16 TLSERERQVLSAVVAG--L--------PNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HHCHHHHHHHHHHTTT--C--------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred hCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3677788777664322 1 3468999999999999999988777776654
No 111
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=40.48 E-value=33 Score=24.84 Aligned_cols=41 Identities=5% Similarity=0.066 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc-cccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK-NASG 264 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR-aK~k 264 (314)
++|.+|+++|-+..-. .|...+|++...|-|.|.... ..|.
T Consensus 11 rls~eqk~~L~~~l~~--------------~l~~~lgip~~~v~V~i~e~~~~~w~ 52 (76)
T 1gyx_A 11 ELDEQQKAALAADITD--------------VIIRHLNSKDSSISIALQQIQPESWQ 52 (76)
T ss_dssp CCCHHHHHHHHHHHHH--------------HHHHHHTCCGGGCEEEEEECCGGGHH
T ss_pred CCCHHHHHHHHHHHHH--------------HHHHHhCcCCceEEEEEEEeChHHEE
Confidence 4689999888655544 788889999999998887543 3443
No 112
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=39.91 E-value=37 Score=23.79 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
..|.+|++.|-+.+-. .|+..+|+++..|-|-|+-.
T Consensus 13 grs~eqK~~l~~~lt~--------------~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSD--------------LMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHH--------------HHHHHHCcCcccEEEEEEEe
Confidence 3589999998655555 78889999999999887644
No 113
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=39.74 E-value=9.5 Score=31.83 Aligned_cols=42 Identities=7% Similarity=0.130 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNA 262 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK 262 (314)
++...+.|.+-||. .....++|++.||++.+|-..|.|+-.-
T Consensus 36 l~aA~~lf~~~G~~-----~~t~~~IA~~Agvs~~t~Y~~F~sKe~L 77 (230)
T 2iai_A 36 LSVAVQVFIERGYD-----GTSMEHLSKAAGISKSSIYHHVTGKEEL 77 (230)
T ss_dssp HHHHHHHHHHHCTT-----TCCHHHHHHHHTSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHcCcc-----ccCHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 56666677774433 3467789999999999999999887543
No 114
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=39.56 E-value=6.2 Score=33.03 Aligned_cols=44 Identities=7% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 211 FTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 211 FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
++..|.+.|.- .|.......++|..+||+..+|+.+++.-|.+.
T Consensus 199 L~~~~r~vl~l---------~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 199 LDERERLIVYL---------RYYKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -----------------------------------------------------
T ss_pred CCHHHHHHHHH---------HHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 55555555542 334455677999999999999999987655554
No 115
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=39.38 E-value=10 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCC--HHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccc
Q 046396 210 KFT--QEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMH 257 (314)
Q Consensus 210 ~FT--~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQ 257 (314)
.++ .++...+..++.. |+ ...++|..+||++.+|.-|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~--------s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY--------TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC--------CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHH
Confidence 466 7777777766543 22 356899999999999999875
No 116
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=39.22 E-value=40 Score=22.89 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 211 FTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 211 FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
.|.+|++.|.+..-+ .|+..+|+++..|-|-|+..
T Consensus 12 ~s~eqk~~l~~~lt~--------------~l~~~lg~~~~~v~V~i~e~ 46 (64)
T 3abf_A 12 RPPEKKRELVRRLTE--------------MASRLLGEPYEEVRVILYEV 46 (64)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHTTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHhCCCcccEEEEEEEc
Confidence 378999888655544 78888999999999977644
No 117
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=39.10 E-value=12 Score=25.23 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccc
Q 046396 218 KMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 218 ~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
.|+.+-+..||. ..+||..+||+..+|.-|..+++.
T Consensus 9 ~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 9 RIRARRKKLKIR--------QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 445555554543 568999999999999999876543
No 118
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=39.03 E-value=14 Score=26.33 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..|+.+.+..+... +|| ...+||..+||+..+|.-|-.+++
T Consensus 9 ~~~~g~~lr~~R~~---~gl--------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKK---LSL--------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHH---TTC--------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHH---cCC--------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 47889888887643 333 357899999999999999988765
No 119
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=38.14 E-value=14 Score=25.23 Aligned_cols=36 Identities=8% Similarity=0.162 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccc
Q 046396 218 KMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 218 ~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
.|+.+-+..||. ..+||..+||+..+|.-|..+++.
T Consensus 7 ~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 7 RLKKRRIALKMT--------QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 445555554443 468999999999999999987654
No 120
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=37.63 E-value=43 Score=25.56 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHN 258 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQN 258 (314)
|.|||++|.+.+.+ .|++-+|-+...|+|-|.-
T Consensus 14 T~EQKralaeE~T~--------------if~evLGcpPgsV~IVi~E 46 (72)
T 3mb2_B 14 DRTRKQAFAAEASA--------------IFQRVIGTPPGRLQLIIQI 46 (72)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCCCCCcEEEEEEe
Confidence 69999999888777 8999999999999999864
No 121
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=35.09 E-value=5.3 Score=33.59 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
++.-.+.|.+-|| +.....++|++.||++.+|--.|.|+..-+
T Consensus 50 l~aA~~lf~e~G~-----~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 50 LATAENLLEDRPL-----ADISVDDLAKGAGISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp HHHHHHHHHHSCG-----GGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCc-----ccCCHHHHHHHhCCcHHHHHHHCCCHHHHH
Confidence 3444455666333 344678999999999999999998876543
No 122
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=34.75 E-value=22 Score=30.61 Aligned_cols=55 Identities=5% Similarity=0.129 Sum_probs=34.7
Q ss_pred CCCCCCCCCHHHH-HHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 204 KKRSRTKFTQEQK-EKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 204 kKR~RT~FT~eQl-~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
+++.|...+.+++ +.-.+.|..-| .+.....+||+++||++..|-..|.|+-.-.
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~~G-----~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDTVG-----ERGLTFRALAERLATGPGAIYWHITGKAELL 64 (237)
T ss_dssp -------CCHHHHHHHHHHHHHHTT-----TTTCCHHHHHHHHTSCGGGGGGTCCCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcC-----cccCCHHHHHHHHCCChHHHHHhcCCHHHHH
Confidence 3445556676664 44556677733 3444677899999999999999998875543
No 123
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=34.71 E-value=6 Score=28.43 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCcCCCCC---HHHHHHHHHHhCCCCCceeeccccccc
Q 046396 211 FTQEQKEKMLSFAERLGWKMNRAE---EKLTQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 211 FT~eQl~~Le~~FeklGWr~~~pd---~~~r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
+|.+++..+..+.++ ....- .-...+||..+||+..+|.-|..+++.
T Consensus 2 lt~~~~~~~~~l~~~----l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 2 LTQEQLEDARRLKAI----WEKKKNELGLSYESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp CCHHHHHHHHHHHHH----HHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 567777766665554 11100 012468999999999999999877653
No 124
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=33.24 E-value=14 Score=29.10 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
.++.+++..|.. ++|| ...+||..+||+..+|.-|-.+++.
T Consensus 70 ~~~~~~l~~~R~---~~gl--------sq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 70 TVAPEFIVKVRK---KLSL--------TQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TCCHHHHHHHHH---HTTC--------CHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCCHHHHHHHHH---HcCC--------CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 466666666653 3333 3568999999999999999987653
No 125
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.11 E-value=5.7 Score=31.19 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.+++.|.+.|. .|- ......++|..+|++..+|+.+++.-|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~---------~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI---------RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHT---------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH---------cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45666666665 222 122456899999999999999998777666654
No 126
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=33.00 E-value=5 Score=32.01 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.+++.|.+.+.-.|.. | ....++|..+|+++.+|+.|++.-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~-g--------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD-D--------YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHT-C--------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4788888888766543 1 2457899999999999999999877776653
No 127
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=32.90 E-value=4.6 Score=34.33 Aligned_cols=43 Identities=5% Similarity=0.084 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
++...++|.+-|| ......+||++.||++.+|-.+|.|+..-+
T Consensus 52 l~aA~~lf~~~G~-----~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll 94 (245)
T 3aqt_A 52 ITSARTLMAERGV-----DNVGIAEITEGANIGTGTFYNYFPDREQLL 94 (245)
T ss_dssp HHHHHHHHHHHCG-----GGCCHHHHHHHTTSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHHhcCc-----ccCcHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 3444455665343 234677999999999999999999876544
No 128
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.67 E-value=9.7 Score=33.66 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
..+++.|++.|.-.++- ....++|..+|++..+|++..++-|.|.+...
T Consensus 196 ~~L~~~erevl~L~~~G----------~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIRKG----------LSSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHHTT----------CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 57999999998876433 14578999999999999999998888887754
No 129
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=32.42 E-value=19 Score=24.30 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCceeeccccccc
Q 046396 238 TQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 238 r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
..+||..+||+..+|.-|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 468999999999999999877654
No 130
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=32.11 E-value=12 Score=32.18 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCC-HHHHHHHHHHhCCCCCceeeccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAE-EKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd-~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
|-+||.+++.....+..+ ++-.++.. ...+.++|+++||++.++--|-...
T Consensus 21 ~r~yt~EfK~aAv~l~~~-~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~ 72 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVEN-ELMESNNEEKRTQDEMANELGINRTTLWEWRTKN 72 (155)
T ss_dssp HTTSCHHHHHHHHHHHHH-HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred hhhcCHHHHHHHHHHHHc-cccccccccCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 445999999998766544 11101110 2367899999999999999997643
No 131
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.06 E-value=18 Score=24.96 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCCceeeccccccc
Q 046396 238 TQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 238 r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
..+||..+||+..+|.-|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467888899988888888876543
No 132
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.50 E-value=3.3 Score=30.98 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
.+++.|.+.|...|-- . .-......++|..+|+++.+|+.|...-+.|.|+.-
T Consensus 18 ~L~~~er~vl~l~~~l----~-~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGL----L-DGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTT----T-TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHcc----C-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678888888766531 0 001235678999999999999999987777776543
No 133
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=31.38 E-value=57 Score=21.83 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
|.+|+++|-+..-. .|...+|++...|-|-|+.-
T Consensus 12 s~e~k~~l~~~i~~--------------~l~~~lg~p~~~v~v~i~e~ 45 (62)
T 1otf_A 12 TDEQKETLIRQVSE--------------AMANSLDAPLERVRVLITEM 45 (62)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHTCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEEe
Confidence 78999888654444 77888999999998887643
No 134
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=31.37 E-value=61 Score=23.01 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 211 FTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 211 FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
.|.+|++.|-+.+-. .|+..+|+++..|-|-|...
T Consensus 12 rs~eqK~~L~~~it~--------------~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 12 RSTEQKAELARALSA--------------AAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHHTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHhCCCcccEEEEEEEc
Confidence 389999998765555 78888999999888877643
No 135
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=30.99 E-value=4.8 Score=32.77 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
.+++.|.+.|. ..|.......++|..+|+++.+|+.+++.-|.+.|+.-
T Consensus 93 ~Lp~~~r~vl~---------L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 93 RMTPLSRQALL---------LTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TSCTTHHHHHT---------TTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHH---------HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46777777764 45566667789999999999999999987777776654
No 136
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=29.74 E-value=31 Score=24.86 Aligned_cols=23 Identities=4% Similarity=0.180 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCceeecccccc
Q 046396 238 TQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 238 r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..+||..+||+..+|.-|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999987754
No 137
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.23 E-value=12 Score=28.45 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccccc
Q 046396 207 SRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGR 265 (314)
Q Consensus 207 ~RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kK 265 (314)
.-..||..|++.|.-+++ |+ ...++|..+||+.++|+....+=+.|+.-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~--------s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF--------TNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 344689999999987763 32 45789999999999999888766655543
No 138
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.05 E-value=24 Score=24.13 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 217 EKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 217 ~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
+.|..+-+..||. ..+||..+||+..+|.-|..+++
T Consensus 16 ~~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 16 QRLRELRTAKGLS--------QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHCCCC
Confidence 3444445554443 46889999999999888887653
No 139
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=28.95 E-value=14 Score=30.15 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
++...+.|.+-| .......++|++.||++.+|-.+|.|+..-+
T Consensus 34 l~aa~~lf~~~G-----~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 34 VNAAIEVLAREG-----ARGLTFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHHTC-----TTTCCHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHHhC-----hhhccHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 444555666623 3445678999999999999999999876544
No 140
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=28.89 E-value=24 Score=24.47 Aligned_cols=36 Identities=6% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 217 EKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 217 ~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..|..+-+..||. ..+||..+||+..+|.-|..+++
T Consensus 10 ~~l~~~r~~~g~s--------q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 10 EHLMELITQQNLT--------INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 3445555554443 45788888888888888887665
No 141
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.68 E-value=42 Score=25.86 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhC--CCCCceeeccccccc
Q 046396 209 TKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVG--VSRRVFKVWMHNNKN 261 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiG--l~~~vVKVWFQNRRa 261 (314)
.+++.+++..+..+.+. .... ..+|+.++| ++..+|.-|++...-
T Consensus 59 ~~l~~~~~~~i~~~~~~-----~~~s---~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRAASN-----SCKT---ARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHHHHH-----CCCC---HHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhC-----CCCC---HHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 36899999888877444 3222 356778888 788899999976554
No 142
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=28.05 E-value=71 Score=21.31 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
|.+|+++|-+..-. .|+..+|++...|-|-|+.-
T Consensus 12 s~eqk~~l~~~i~~--------------~l~~~lg~~~~~v~V~i~e~ 45 (61)
T 2opa_A 12 TDEQKRNLVEKVTE--------------AVKETTGASEEKIVVFIEEM 45 (61)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcCeEEEEEEEc
Confidence 78999888654444 77888999999999888643
No 143
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.43 E-value=23 Score=24.46 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=13.2
Q ss_pred HHHHHHhCCCCCceeecccccc
Q 046396 239 QDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 239 ~eLa~eiGl~~~vVKVWFQNRR 260 (314)
.+||..+||+..+|.-|..+++
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 27 RWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4566666666666666665443
No 144
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=27.38 E-value=17 Score=30.60 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=11.2
Q ss_pred CccccccCCcccc
Q 046396 85 SLNCAACGCHRNF 97 (314)
Q Consensus 85 ~l~caac~chrnf 97 (314)
.|+|.|||.+|..
T Consensus 123 ~l~C~ACGa~~~V 135 (138)
T 1nee_A 123 LLKCEACGAKAPL 135 (138)
T ss_dssp EEECSTTSCCCCS
T ss_pred EEEccCCCCCccc
Confidence 6999999998864
No 145
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=27.07 E-value=35 Score=27.56 Aligned_cols=42 Identities=10% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHhcCC---cCCCCCHHHHHHHHHHhCCCCC
Q 046396 209 TKFTQEQKEKMLSFAERLGW---KMNRAEEKLTQDFCSEVGVSRR 250 (314)
Q Consensus 209 T~FT~eQl~~Le~~FeklGW---r~~~pd~~~r~eLa~eiGl~~~ 250 (314)
+.+|.+|++.|+..|...-. +.-+.+..+...+.+.+|+...
T Consensus 1 sqLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 36899999999999986432 1235677777888888887644
No 146
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.98 E-value=20 Score=26.46 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCCCceeecccccc
Q 046396 238 TQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 238 r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..+||+.+||+..+|.-|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 45677777777777777776543
No 147
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=26.87 E-value=13 Score=24.44 Aligned_cols=12 Identities=50% Similarity=1.002 Sum_probs=9.9
Q ss_pred CccccccCCccc
Q 046396 85 SLNCAACGCHRN 96 (314)
Q Consensus 85 ~l~caac~chrn 96 (314)
.|+|.|||-.|.
T Consensus 21 ~l~C~aCG~~~~ 32 (36)
T 1k81_A 21 LLKCMACGAIRP 32 (36)
T ss_dssp EEEEETTTEEEE
T ss_pred EEEhhcCCCccc
Confidence 689999997664
No 148
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.81 E-value=3.4 Score=32.83 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.+++.|.+.|.-.|.. .....++|..+|+++.+|+.+++.-|.+.++.
T Consensus 25 ~L~~~~r~vl~l~~~~---------g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE---------DYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTS---------CCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3566666666544322 22456899999999999999998877777654
No 149
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=26.68 E-value=55 Score=26.74 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc-CCCCCHHHHHHHHHHhCCCCC
Q 046396 208 RTKFTQEQKEKMLSFAERLGWK-MNRAEEKLTQDFCSEVGVSRR 250 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr-~~~pd~~~r~eLa~eiGl~~~ 250 (314)
++.||.+|++.|+..|..+..- .-+.+..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 4689999999999999875432 235677888888888887654
No 150
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=26.33 E-value=24 Score=27.71 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNA 262 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK 262 (314)
++.-...|.+-|+. .....++|++.||++.+|--.|.|+..-
T Consensus 18 l~aA~~lf~~~G~~-----~~t~~~IA~~agvs~~t~Y~~F~sK~~L 59 (199)
T 3on2_A 18 LARAESTLEKDGVD-----GLSLRQLAREAGVSHAAPSKHFRDRQAL 59 (199)
T ss_dssp HHHHHHHHHHHCGG-----GCCHHHHHHHTC-----CCCSSSSHHHH
T ss_pred HHHHHHHHHhcChh-----hhhHHHHHHHhCCChHHHHHHhCCHHHH
Confidence 44455556663443 3467789999999999999999987543
No 151
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=26.26 E-value=14 Score=31.55 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
.+|..|++.|..+.++|-- ......-...+||+.+||+..+|.-|..+++
T Consensus 6 ~lt~~~~~~~~~~~~~l~~-~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 6 PLTQEQLEDARRLKAIYEK-KKNELGLSQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CCCSHHHHHHHHHHHHHHH-HTTTTTCCSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred cCCHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 4677777544433333110 0111111456899999999999999998754
No 152
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=26.20 E-value=26 Score=25.31 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCCCceeecccccc
Q 046396 238 TQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 238 r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..+||+.+||+..+|.-|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45778888888888888887654
No 153
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.16 E-value=3.9 Score=29.32 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASG 264 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~k 264 (314)
.+++.|.+.|...|.. . ........++|..+|+++.+|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l----~-~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGL----I-DGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTT----T-TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhc----c-cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788888888776641 0 001224568999999999999999987777766
No 154
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=25.91 E-value=80 Score=22.91 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
|.+|++.|-+..-. .++..+|+++..|-|.|+..
T Consensus 13 s~eqK~~L~~~it~--------------~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 13 TDEQKRALSAGLLR--------------VISEATGEPRENIFFVIREG 46 (76)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHHCcCcccEEEEEEEe
Confidence 79999988655444 77888999999888877643
No 155
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.88 E-value=16 Score=26.53 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC-cCCCCCHHHHHHHHHHhCCCCCceeeccc
Q 046396 207 SRTKFTQEQKEKMLSFAERLGW-KMNRAEEKLTQDFCSEVGVSRRVFKVWMH 257 (314)
Q Consensus 207 ~RT~FT~eQl~~Le~~FeklGW-r~~~pd~~~r~eLa~eiGl~~~vVKVWFQ 257 (314)
.-..++.++++.|+.+|..+.- +.-+.+..+...+...+|++...|+.+|.
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3446899999999999987542 23456778888888889987776666663
No 156
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=25.80 E-value=77 Score=24.30 Aligned_cols=35 Identities=3% Similarity=-0.033 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
+.+|+++|-+.+-. .|.+.+|++...|-|.|..-.
T Consensus 69 ~~eqk~~l~~~i~~--------------~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 69 GGPQNKSYTKLLCD--------------ILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp SHHHHHHHHHHHHH--------------HHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcceEEEEEEECC
Confidence 69999888655544 789999999999999987543
No 157
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=25.61 E-value=29 Score=24.35 Aligned_cols=36 Identities=6% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 217 EKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 217 ~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..|..+-+..||. ..+||..+||+..+|.-|..+++
T Consensus 13 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 13 QLLTKLRKEASLS--------QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCC
Confidence 3444555554443 46899999999999999987754
No 158
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=25.49 E-value=87 Score=21.59 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccc
Q 046396 211 FTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMH 257 (314)
Q Consensus 211 FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQ 257 (314)
.|.+|+++|-+.+-. .+...+|+++..|-|-|+
T Consensus 11 rs~eqk~~L~~~it~--------------~~~~~lg~p~~~v~V~i~ 43 (65)
T 3ry0_A 11 RSPQEVAALGEALTA--------------AAHETLGTPVEAVRVIVE 43 (65)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEE
T ss_pred CCHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEE
Confidence 379999998655555 778889999988887665
No 159
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=25.47 E-value=60 Score=27.10 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHN 258 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQN 258 (314)
.||.+||+.|-+..-+ .++..+|+++.-|.|.|+-
T Consensus 11 ~~t~eqK~aLa~~It~--------------a~~e~~~vP~~~v~Vif~e 45 (149)
T 3mf7_A 11 RLTPSAKHAVAKAITD--------------AHRGLTGTQHFLAQVNFQE 45 (149)
T ss_dssp TSCHHHHHHHHHHHHH--------------HHHHTCCTTCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHH--------------HHHHHHCcChHHEEEEEEE
Confidence 5789999998655444 6777889999999999974
No 160
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.21 E-value=75 Score=25.53 Aligned_cols=50 Identities=10% Similarity=-0.039 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHH-HHHHHH------hCCCCCceeeccccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLT-QDFCSE------VGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r-~eLa~e------iGl~~~vVKVWFQNRRa 261 (314)
+.+++.++++.+.++... .+.....+. .+|..+ +.++..+|.-|++..+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~----~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ----NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH----CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHH----CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 456788888888888876 444444333 233222 24777888888864433
No 161
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=25.04 E-value=82 Score=24.00 Aligned_cols=35 Identities=6% Similarity=0.110 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
+.+|+++|-+.+-. .|.+.+|++...|-|.|..-.
T Consensus 68 ~~eqk~~l~~~i~~--------------~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 68 EPSRNRDHSAKLFD--------------HLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp SHHHHHHHHHHHHH--------------HHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcCeEEEEEEECC
Confidence 69999888655544 789999999999999987543
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.96 E-value=28 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCCCceeecccccc
Q 046396 238 TQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 238 r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..+||..+||+..+|.-|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45778888888888877776653
No 163
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.95 E-value=15 Score=31.83 Aligned_cols=49 Identities=4% Similarity=0.099 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
...+|+.|++.|.-+++- . ...++|..+||++++|+.+++|-+.|..-.
T Consensus 173 ~~~Lt~~e~~vl~~~~~g----~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG----K------TASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT----C------CHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHHHHcC----C------CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 456899999998765433 1 346899999999999999998777766543
No 164
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=24.15 E-value=18 Score=30.55 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=5.5
Q ss_pred CccccccCCcccc
Q 046396 85 SLNCAACGCHRNF 97 (314)
Q Consensus 85 ~l~caac~chrnf 97 (314)
.|+|.|||.+|..
T Consensus 124 ~l~C~ACGa~~~V 136 (139)
T 3cw2_K 124 YIVCLACGAQTPV 136 (139)
T ss_dssp TSSCCC-------
T ss_pred EEEecCCCCCCcc
Confidence 6999999988753
No 165
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=24.05 E-value=19 Score=27.61 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=8.7
Q ss_pred HhCCCCCceeeccccccccccc
Q 046396 244 EVGVSRRVFKVWMHNNKNASGR 265 (314)
Q Consensus 244 eiGl~~~vVKVWFQNRRaK~kK 265 (314)
+++++...+..||++.|..-+.
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~ 23 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKT 23 (97)
T ss_dssp ------CCCCGGGGC-------
T ss_pred CCCCCCcccccccccccCCCCC
Confidence 6788999999999999986553
No 166
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.65 E-value=4.5 Score=33.10 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCCceeecccccccccccc
Q 046396 237 LTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 237 ~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
...++|..+|++..+|+.+.+.-|.+.|+.
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999998777777654
No 167
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=23.46 E-value=91 Score=24.13 Aligned_cols=35 Identities=0% Similarity=-0.046 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
+.+|+++|-+.+-. .|.+.+|++...|-|.|+...
T Consensus 69 ~~eqk~~l~~~i~~--------------~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 69 SADDNIRHTQKITQ--------------FCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGEEEEEEECC
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEECC
Confidence 69999888655544 788999999999999887543
No 168
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.89 E-value=1e+02 Score=20.29 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccc
Q 046396 212 TQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHN 258 (314)
Q Consensus 212 T~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQN 258 (314)
+.+|++.|.+..-. .|+..+|+++..|-|-|+.
T Consensus 15 s~e~k~~l~~~l~~--------------~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 15 SDEQLKNLVSEVTD--------------AVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHCCCGGGCEEEEEE
T ss_pred CHHHHHHHHHHHHH--------------HHHHHhCcCcccEEEEEEE
Confidence 78999888655554 7788899999998887753
No 169
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.60 E-value=1.7e+02 Score=22.04 Aligned_cols=45 Identities=9% Similarity=0.026 Sum_probs=33.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-cCCCCCHHHHHHHHHHhCCCC
Q 046396 205 KRSRTKFTQEQKEKMLSFAERLGW-KMNRAEEKLTQDFCSEVGVSR 249 (314)
Q Consensus 205 KR~RT~FT~eQl~~Le~~FeklGW-r~~~pd~~~r~eLa~eiGl~~ 249 (314)
...++.++++|+..|+..|..+.- +.-+.+..+...+...+|+..
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 56 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFEL 56 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 345678999999999999998542 234567788888888887544
No 170
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=22.49 E-value=24 Score=30.10 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=11.3
Q ss_pred CCccccccCCcccc
Q 046396 84 ASLNCAACGCHRNF 97 (314)
Q Consensus 84 ~~l~caac~chrnf 97 (314)
-.|+|.|||..|.-
T Consensus 124 ~~l~C~ACGa~~~V 137 (148)
T 2d74_B 124 HFLKCEACGAETPI 137 (148)
T ss_dssp BCCCCSSSCCCCCC
T ss_pred EEEEecCCCCCccc
Confidence 36999999987754
No 171
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=22.49 E-value=37 Score=25.09 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred ccccCccccccCCCCCCCCcCCcccccc--CCccccccCC
Q 046396 64 HALDGCGEFMPSPTATSNDPASLNCAAC--GCHRNFHRRD 101 (314)
Q Consensus 64 ~~~dgc~ef~~~~~~g~~d~~~l~caac--~chrnfhr~~ 101 (314)
..=|=|++|| .. ..|+|..| .||+-=+.+.
T Consensus 36 t~C~~C~~~l--~~------qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 36 GWCDLCGREV--LR------QALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CBCTTTSSBC--SS------CCEECTTSSCEECTGGGGGC
T ss_pred cchhhhhHHH--Hh------CcCccCCCCCeechhhhccC
Confidence 4458899999 32 36999999 4666555443
No 172
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=22.23 E-value=10 Score=30.71 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=7.6
Q ss_pred ceeecccccc
Q 046396 251 VFKVWMHNNK 260 (314)
Q Consensus 251 vVKVWFQNRR 260 (314)
-|||||||--
T Consensus 53 dvkvwmqnle 62 (127)
T 2jpf_A 53 DVKVWMQNLE 62 (127)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4799999843
No 173
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.06 E-value=15 Score=29.51 Aligned_cols=41 Identities=7% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKN 261 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRa 261 (314)
++.....|.+-| .+.....++|++.||++.+|--+|.|+-.
T Consensus 37 l~aa~~l~~~~G-----~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREKG-----YYATSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHTC-----TTTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcC-----cccCcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 345555666633 33456789999999999999999998764
No 174
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=22.00 E-value=24 Score=30.87 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=12.6
Q ss_pred CCccccccCCcccccc
Q 046396 84 ASLNCAACGCHRNFHR 99 (314)
Q Consensus 84 ~~l~caac~chrnfhr 99 (314)
-.|+|.|||.+|.-.-
T Consensus 118 ~~l~C~ACGa~~~V~~ 133 (170)
T 2g2k_A 118 IGNSCKACGYRGMLDT 133 (170)
T ss_dssp EEEEETTTCCCCCSCS
T ss_pred EEEEccccCCcccccc
Confidence 3689999999887643
No 175
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=21.84 E-value=31 Score=22.57 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=8.8
Q ss_pred cCCccccccCC
Q 046396 83 PASLNCAACGC 93 (314)
Q Consensus 83 ~~~l~caac~c 93 (314)
.++++|.||.-
T Consensus 19 ~~~~kC~aCet 29 (34)
T 3gj5_B 19 ADSTKCIACES 29 (34)
T ss_dssp SSCSBCTTTCC
T ss_pred cccCEEcccCC
Confidence 45899999963
No 176
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.55 E-value=18 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCCCceeecccccc
Q 046396 238 TQDFCSEVGVSRRVFKVWMHNNK 260 (314)
Q Consensus 238 r~eLa~eiGl~~~vVKVWFQNRR 260 (314)
..+||..+||+..+|.-|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998754
No 177
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=21.50 E-value=0.63 Score=39.64 Aligned_cols=45 Identities=13% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNN 259 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNR 259 (314)
.++.|.+++|.+ |-|-+++|-+..+.+|+-+| |.+..|+.|+|--
T Consensus 18 tl~eeeL~rLl~----lSheik~P~IpLksel~vEi-LEkG~VRfWlQae 62 (142)
T 2jtd_A 18 SHMEEEMKRLLA----LSQEHKFPTVPTKSELAVEI-LEKGQVRFWMQAE 62 (142)
T ss_dssp ---CCCSHHHHH----CCCCCCCSSCSSSCEEEEEE-ETTTEEEEEEECS
T ss_pred eeCHHHHHHHHH----hhhhccCCcccchhhhhHHH-HhcCcEEEEEEhh
Confidence 466777888875 45559999988888888888 6788999999843
No 178
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=21.49 E-value=25 Score=27.92 Aligned_cols=44 Identities=7% Similarity=0.120 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 215 QKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 215 Ql~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
=++.....|.+-||. .....++|++.||++.+|-..|.|+-.-+
T Consensus 21 Il~aa~~l~~~~G~~-----~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 64 (211)
T 3him_A 21 IRAAAIEVFAAKGYG-----ATTTREIAASLDMSPGAVYPHYKTKESLL 64 (211)
T ss_dssp HHHHHHHHHHHHCST-----TCCHHHHHHHTTCCTTSSTTTCSSHHHHH
T ss_pred HHHHHHHHHHHcCCC-----cCCHHHHHHHhCCCcChhhhcCCCHHHHH
Confidence 345555666663433 34677999999999999999998876533
No 179
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.31 E-value=22 Score=28.91 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=4.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 232 RAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 232 ~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
..+.....++|++.||++.+|-.+|.|+-.-.
T Consensus 47 G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~Ll 78 (212)
T 2np3_A 47 GFDATSLRRIAETAGVDQSLVHHFYGTKENLF 78 (212)
T ss_dssp ------------------------CCC-CHHH
T ss_pred CcccccHHHHHHHcCCCHHHHHHHhCCHHHHH
Confidence 34556778999999999999999998876543
No 180
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=21.14 E-value=33 Score=25.08 Aligned_cols=20 Identities=5% Similarity=0.225 Sum_probs=10.0
Q ss_pred HHHHHHhCCCCCceeecccc
Q 046396 239 QDFCSEVGVSRRVFKVWMHN 258 (314)
Q Consensus 239 ~eLa~eiGl~~~vVKVWFQN 258 (314)
.+||+.+||++.+|.-|..+
T Consensus 25 ~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 25 REFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHcC
Confidence 34555555555555555443
No 181
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=21.00 E-value=11 Score=31.53 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 216 KEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 216 l~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
++...+.|.+-| .......++|++.||++.+|--.|.|+-.-+
T Consensus 45 l~AA~~lf~e~G-----~~~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll 87 (214)
T 2guh_A 45 VDAAGRAFATRP-----YREITLKDIAEDAGVSAPLIIKYFGSKEQLF 87 (214)
T ss_dssp HHHHHHHHHHSC-----GGGCCHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHcC-----hhhcCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 334445566623 3344677899999999999999998876543
No 182
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.92 E-value=1.5e+02 Score=23.34 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHh--------C--CCCCceeeccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEV--------G--VSRRVFKVWMHNN 259 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~ei--------G--l~~~vVKVWFQNR 259 (314)
+.+++.++++.+..+... ....... +|+..+ | ++..+|.-|++.+
T Consensus 88 ~~~~~~~~~~~I~~~~~~----~~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQ----NPTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHH----CTTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHh----CcchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 457899999999988876 4444433 333333 5 6778888887643
No 183
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=20.72 E-value=28 Score=24.65 Aligned_cols=27 Identities=33% Similarity=0.675 Sum_probs=18.3
Q ss_pred ccccCccccccCCCCCCCCcCCccccccC--Cccccc
Q 046396 64 HALDGCGEFMPSPTATSNDPASLNCAACG--CHRNFH 98 (314)
Q Consensus 64 ~~~dgc~ef~~~~~~g~~d~~~l~caac~--chrnfh 98 (314)
..=|=|++|| .. ..|+|..|+ ||+-=+
T Consensus 23 t~C~~C~~~i--~k------qg~kC~~C~~~cH~kC~ 51 (59)
T 1rfh_A 23 GWCDLCGREV--LR------QALRCANCKFTCHSECR 51 (59)
T ss_dssp EECTTTCSEE--CS------CCEECTTTSCEECHHHH
T ss_pred eEchhcchhh--hh------CccEeCCCCCeEehhhh
Confidence 3457899999 22 369999984 555433
No 184
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.57 E-value=6.1 Score=33.18 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 210 KFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 210 ~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
.+++.|...|...|-. .....++|..+|++..+|+.+++.-|.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~---------g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE---------ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS---------CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3566666666544422 22456899999999999999998777776654
No 185
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.54 E-value=24 Score=30.47 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=12.9
Q ss_pred CCccccccCCcccccc
Q 046396 84 ASLNCAACGCHRNFHR 99 (314)
Q Consensus 84 ~~l~caac~chrnfhr 99 (314)
-.|+|.|||.+|...-
T Consensus 125 ~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 125 IGNSCKACGYRGMLDT 140 (157)
T ss_dssp EEEECSSSCCEEECCC
T ss_pred EEEEccCCCCCCcccc
Confidence 3689999999987654
No 186
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.53 E-value=9.6 Score=25.82 Aligned_cols=29 Identities=7% Similarity=0.042 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCCceeeccccccccccccc
Q 046396 239 QDFCSEVGVSRRVFKVWMHNNKNASGRKD 267 (314)
Q Consensus 239 ~eLa~eiGl~~~vVKVWFQNRRaK~kKk~ 267 (314)
.++|..+|+++.+|+.++++-+.|.+...
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 58999999999999999987777766544
No 187
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=20.09 E-value=13 Score=32.64 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeeccccccccc
Q 046396 217 EKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNAS 263 (314)
Q Consensus 217 ~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~ 263 (314)
+...++|.+-| .......+||++.||++.+|-.+|.|+-.-.
T Consensus 48 ~AA~~lf~e~G-----~~~~S~~~IA~~AGVs~~tlY~hF~sKe~Ll 89 (273)
T 3c07_A 48 ETAMRLFQERG-----YDRTTMRAIAQEAGVSVGNAYYYFAGKEHLI 89 (273)
T ss_dssp HHHHHHHHHTC-----STTCCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHhCC-----ccccCHHHHHHHHCCCHHHHHHHcCCHHHHH
Confidence 44455566633 3344677899999999999999998876543
No 188
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.07 E-value=21 Score=30.89 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHhCCCCCceeecccccccccccc
Q 046396 208 RTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFCSEVGVSRRVFKVWMHNNKNASGRK 266 (314)
Q Consensus 208 RT~FT~eQl~~Le~~FeklGWr~~~pd~~~r~eLa~eiGl~~~vVKVWFQNRRaK~kKk 266 (314)
...+|+.|++.|.-+++- ....++|..+|+++.+|+..++|-+.|..-.
T Consensus 171 ~~~Lt~~e~~vl~~~~~g----------~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVG----------KTMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCCCHHHHHHHHHHTTT----------CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 457999999988654322 2456899999999999999988777766443
Done!