BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046397
(901 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/185 (54%), Positives = 133/185 (71%), Gaps = 3/185 (1%)
Query: 1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
+L+ R LP K ++ +L AISQN VVII G TGCGKTTQVPQFIL+ I + R A C+I
Sbjct: 53 ILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNI 112
Query: 61 ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR-DTRLLFCTTGILLRRLLV 119
+ TQPRRISA+SV+ERVA ERGE+ G+S GY VR E + R + FCT G+LLR+L
Sbjct: 113 VVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL-- 170
Query: 120 DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGA 179
+ ++G++HVIVDE+HER +N DFLL+VL+D++ PE+R+VL SAT+D F YF
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFFNC 230
Query: 180 TVINI 184
+I +
Sbjct: 231 PIIEV 235
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 130/205 (63%), Gaps = 6/205 (2%)
Query: 1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
+L+ RR LP + +++ L NQ+++ GETG GKTTQ+PQF+L E+ + +
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLEN--TQV 143
Query: 61 ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD 120
CTQPRR++AMSV++RVA E KLGE VGY +R E T L + T G+LLR + D
Sbjct: 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED 203
Query: 121 RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGAT 180
+L + +I+DE HER + D L+ +LK ++ RRP+L++++MSATLDAE F YF A
Sbjct: 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP 263
Query: 181 VINIPGFTYPVRTH----FLEDILD 201
++ +PG TYPV + F D LD
Sbjct: 264 LLAVPGRTYPVELYYTPEFQRDYLD 288
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 218/434 (50%), Gaps = 24/434 (5%)
Query: 280 ICEKERPGAVLVFMTGWDDINSLNDK--LQANRILGD----PTRVLLLTCHGSMASSEQR 333
I E G +L+F+TG D+I K L+ ++++ + P V L +GS+ +Q+
Sbjct: 297 IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPL--YGSLPPHQQQ 354
Query: 334 LIFDE-PESGV----RKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPS 388
IF+ PES RK+V++TNIAETS+TI+ +V+V+D G +K+ Y+ LL S
Sbjct: 355 RIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414
Query: 389 WISTVSXXXXXXXXXXVQPGECYRLYPRCVYDA-FAEYQLPEILRTPLQSLCLQIKSLRL 447
IS S +PG+C+RLY + E PEILR+ L S L++K L +
Sbjct: 415 PISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGI 474
Query: 448 GTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLIL 507
+ F +PE + A+E L + LD LT LG+ + P++P L MLI
Sbjct: 475 DDLVHFDFMDPPAPETM--MRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIG 532
Query: 508 GAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDA 567
F C + +LTIVA LSV + F+ P K A+ AK+ F+H DH+ L+ + +K
Sbjct: 533 SFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSD 592
Query: 568 ERGLAG-YEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRA 626
E G +++C ++L+ S+ D++R + L+ L T + D IR
Sbjct: 593 EAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDN--IRK 650
Query: 627 VICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSV 686
+ G + ++ ++G + ++ V ++ ++V ++E W+++NE + +
Sbjct: 651 ALASGFFMQVAK-KRSGAKGYITVKDNQDVLIHPSTVLGHDAE----WVIYNEFVLTSKN 705
Query: 687 FLKDSTAVSDSVLL 700
+++ T+V L+
Sbjct: 706 YIRTVTSVRPEWLI 719
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 130/205 (63%), Gaps = 6/205 (2%)
Query: 1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
+L+ RR LP + +++ L NQ+++ GETG GKTTQ+PQF+L E+ + +
Sbjct: 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLEN--TQV 143
Query: 61 ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD 120
CTQPRR++AMSV++RVA E KLGE VGY +R E T L + T G+LLR + D
Sbjct: 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED 203
Query: 121 RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGAT 180
+L + +I+DE HER + D L+ +LK ++ RRP+L++++MSATLDAE F YF A
Sbjct: 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP 263
Query: 181 VINIPGFTYPVRTH----FLEDILD 201
++ +PG TYPV + F D LD
Sbjct: 264 LLAVPGRTYPVELYYTPEFQRDYLD 288
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 218/434 (50%), Gaps = 24/434 (5%)
Query: 280 ICEKERPGAVLVFMTGWDDINSLNDK--LQANRILGD----PTRVLLLTCHGSMASSEQR 333
I E G +L+F+TG D+I K L+ ++++ + P V L +GS+ +Q+
Sbjct: 297 IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPL--YGSLPPHQQQ 354
Query: 334 LIFDE-PESGV----RKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPS 388
IF+ PES RK+V++TNIAETS+TI+ +V+V+D G +K+ Y+ LL S
Sbjct: 355 RIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414
Query: 389 WISTVSXXXXXXXXXXVQPGECYRLYPRCVYDA-FAEYQLPEILRTPLQSLCLQIKSLRL 447
IS S +PG+C+RLY + E PEILR+ L S L++K L +
Sbjct: 415 PISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGI 474
Query: 448 GTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLIL 507
+ F +PE + A+E L + LD LT LG+ + P++P L MLI
Sbjct: 475 DDLVHFDFMDPPAPETM--MRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIG 532
Query: 508 GAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDA 567
F C + +LTIVA LSV + F+ P K A+ AK+ F+H DH+ L+ + +K
Sbjct: 533 SFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSD 592
Query: 568 ERGLAG-YEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRA 626
E G +++C ++L+ S+ D++R + L+ L T + D IR
Sbjct: 593 EAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDN--IRK 650
Query: 627 VICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSV 686
+ G + ++ ++G + ++ V ++ ++V ++E W+++NE + +
Sbjct: 651 ALASGFFMQVAK-KRSGAKGYITVKDNQDVLIHPSTVLGHDAE----WVIYNEFVLTSKN 705
Query: 687 FLKDSTAVSDSVLL 700
+++ T+V L+
Sbjct: 706 YIRTVTSVRPEWLI 719
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 14/236 (5%)
Query: 468 NAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVR 527
A+E L +GALD LT LG+ +A P+EP L KMLI+ C E +LTIV+ LSV+
Sbjct: 22 TAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81
Query: 528 DPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSM 587
+ F P DK+ LA+ K++F DHL L+ + WK+ + +C++NF+ A S+
Sbjct: 82 NVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK---FSNPWCYENFIQARSL 138
Query: 588 KVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSS 647
+ +RK+ L ++ L D C G+ ++ IC G + + +
Sbjct: 139 RRAQDIRKQMLGIMDRHKL---DVVSC---GKSTVRVQKAICSGFF---RNAAKKDPQEG 189
Query: 648 LKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFG 703
+T+ D QV +Y + +A + P W+V++E + ++++ T + L+ F
Sbjct: 190 YRTLIDQQV-VYIHPSSALFNRQP-EWVVYHELVLTTKEYMREVTTIDPRWLVEFA 243
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMS 72
+K +L A+SQ ++ II G G GKTT V + IL++ ++ ++C P I+ +
Sbjct: 194 QKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-----VLCCAPSNIAVDN 248
Query: 73 VSERVA 78
+ ER+A
Sbjct: 249 LVERLA 254
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMS 72
+K +L A+SQ ++ II G G GKTT V + IL++ ++ ++C P I+ +
Sbjct: 194 QKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLK-----VLCCAPSNIAVDN 248
Query: 73 VSERVA 78
+ ER+A
Sbjct: 249 LVERLA 254
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 33/224 (14%)
Query: 19 TAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78
T + + V + TG GKT IL + S G I + +++E+V
Sbjct: 937 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPME-------ALAEQVY 989
Query: 79 SERGEKLGESVGYKV-RLEGMKGRDTRLL-----FCTT----GILLRRLLVDRNLKGVTH 128
+ EK + + KV L G D +LL +T IL RR +N++ +
Sbjct: 990 MDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINL 1049
Query: 129 VIVDEVHERGMNEDFLLIVLKDLLS------RRPELRLVLMSATLDAELFSSYFGGATVI 182
+VDEVH G +L V+ + RP +R+V +S++L +++ G +
Sbjct: 1050 FVVDEVHLIGGENGPVLEVICSRMRYISSQIERP-IRIVALSSSLSNAKDVAHWLGCSAT 1108
Query: 183 NIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSK 226
+ F VR LE L + G+ ++ + Q ++ M+K
Sbjct: 1109 STFNFHPNVRPVPLE--LHIQGFNIS-------HTQTRLLSMAK 1143
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 33/224 (14%)
Query: 19 TAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78
T + + V + TG GKT IL + S G I + +++E+V
Sbjct: 937 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPME-------ALAEQVY 989
Query: 79 SERGEKLGESVGYKV-RLEGMKGRDTRLL-----FCTT----GILLRRLLVDRNLKGVTH 128
+ EK + + KV L G D +LL +T IL RR +N++ +
Sbjct: 990 MDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINL 1049
Query: 129 VIVDEVHERGMNEDFLLIVLKDLLS------RRPELRLVLMSATLDAELFSSYFGGATVI 182
+VDEVH G +L V+ + RP +R+V +S++L +++ G +
Sbjct: 1050 FVVDEVHLIGGENGPVLEVICSRMRYISSQIERP-IRIVALSSSLSNAKDVAHWLGCSAT 1108
Query: 183 NIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSK 226
+ F VR LE L + G+ ++ + Q ++ M+K
Sbjct: 1109 STFNFHPNVRPVPLE--LHIQGFNIS-------HTQTRLLSMAK 1143
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 281 CEKERPGAVLVFM----TGWDDINSL-NDKLQANRILGDPTRVLLLTCHGSMASSEQRLI 335
++++ ++VF T +N L D ++A R +G ++ ++ EQ+LI
Sbjct: 356 LQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASK----ENDRGLSQREQKLI 411
Query: 336 FDEPESGVRKIVLATNIAETSITINDVVFVI 366
DE G +++AT++ E + + +V V+
Sbjct: 412 LDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 4 FRRNLPAYKEKNRLLT----AISQNQVVIISGETGCGKTT 39
F + L A KE ++ A+ +V++++GETG GKTT
Sbjct: 151 FEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTT 190
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 287 GAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKI 346
G+ ++F+ N L KL++ G +L HG + + E+ + D+ G K+
Sbjct: 37 GSSIIFVATKKTANVLYGKLKSE---GHEVSIL----HGDLQTQERDRLIDDFREGRSKV 89
Query: 347 VLATNIAETSITINDVVFVID 367
++ TN+ I I V V++
Sbjct: 90 LITTNVLARGIDIPTVSXVVN 110
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 287 GAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKI 346
G+ ++F+ N L KL++ G +L HG + + E+ + D+ G K+
Sbjct: 38 GSSIIFVATKKTANVLYGKLKSE---GHEVSIL----HGDLQTQERDRLIDDFREGRSKV 90
Query: 347 VLATNIAETSITINDVVFVID 367
++ TN+ I I V V++
Sbjct: 91 LITTNVLARGIDIPTVSXVVN 111
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 287 GAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKI 346
G+ ++F+ N L KL++ G +L HG + + E+ + D+ G K+
Sbjct: 244 GSSIIFVATKKTANVLYGKLKSE---GHEVSIL----HGDLQTQERDRLIDDFREGRSKV 296
Query: 347 VLATNIAETSITINDVVFVID 367
++ TN+ I I V V++
Sbjct: 297 LITTNVLARGIDIPTVSMVVN 317
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 287 GAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKI 346
G+ ++F+ N L KL++ G +L HG + + E+ + D+ G K+
Sbjct: 244 GSSIIFVATKKTANVLYGKLKSE---GHEVSIL----HGDLQTQERDRLIDDFREGRSKV 296
Query: 347 VLATNIAETSITINDVVFVID 367
++ TN+ I I V V++
Sbjct: 297 LITTNVLARGIDIPTVSMVVN 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,885,192
Number of Sequences: 62578
Number of extensions: 986403
Number of successful extensions: 2325
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2305
Number of HSP's gapped (non-prelim): 19
length of query: 901
length of database: 14,973,337
effective HSP length: 108
effective length of query: 793
effective length of database: 8,214,913
effective search space: 6514426009
effective search space used: 6514426009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)