Query 046397
Match_columns 901
No_of_seqs 598 out of 3299
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0920 ATP-dependent RNA heli 100.0 1E-149 2E-154 1316.5 55.9 735 1-772 165-920 (924)
2 KOG0922 DEAH-box RNA helicase 100.0 1E-135 3E-140 1138.1 49.5 618 2-706 44-665 (674)
3 KOG0924 mRNA splicing factor A 100.0 3E-130 7E-135 1076.6 42.0 619 2-707 349-972 (1042)
4 KOG0923 mRNA splicing factor A 100.0 7E-129 2E-133 1066.4 43.7 620 2-707 258-882 (902)
5 KOG0925 mRNA splicing factor A 100.0 2E-122 4E-127 985.9 43.6 617 1-706 39-665 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 8E-116 2E-120 1069.3 59.5 623 2-708 67-697 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1E-111 3E-116 1036.2 60.3 621 2-707 60-686 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 8E-110 2E-114 985.9 45.5 625 1-704 42-707 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 2E-106 4E-111 902.0 38.7 628 2-707 249-1022(1172)
10 KOG0921 Dosage compensation co 100.0 1.2E-99 3E-104 854.9 33.7 786 2-805 371-1185(1282)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.6E-88 1.7E-92 812.4 55.9 570 8-704 1-574 (819)
12 PRK11664 ATP-dependent RNA hel 100.0 1.3E-86 2.8E-91 804.0 55.2 558 7-703 3-566 (812)
13 PHA02653 RNA helicase NPH-II; 100.0 2.4E-58 5.3E-63 544.2 34.1 401 12-510 167-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.8E-39 3.9E-44 394.4 43.3 434 8-522 21-505 (674)
15 PRK02362 ski2-like helicase; P 100.0 5.6E-38 1.2E-42 383.9 38.9 438 10-522 24-529 (737)
16 PRK00254 ski2-like helicase; P 100.0 3.4E-35 7.3E-40 358.6 36.3 434 10-523 24-522 (720)
17 KOG0330 ATP-dependent RNA heli 100.0 6.1E-37 1.3E-41 322.7 17.3 307 11-418 85-408 (476)
18 PRK11776 ATP-dependent RNA hel 100.0 2.3E-35 5E-40 343.7 29.8 310 10-419 27-351 (460)
19 PRK04837 ATP-dependent RNA hel 100.0 3.3E-35 7.2E-40 338.7 29.8 312 10-419 31-364 (423)
20 PRK10590 ATP-dependent RNA hel 100.0 1.4E-34 3.1E-39 335.9 29.1 312 10-419 24-354 (456)
21 PTZ00110 helicase; Provisional 100.0 9.2E-35 2E-39 342.7 26.5 315 10-419 153-486 (545)
22 KOG0331 ATP-dependent RNA heli 100.0 5.8E-35 1.3E-39 328.0 23.3 320 11-420 115-451 (519)
23 PRK11634 ATP-dependent RNA hel 100.0 3E-34 6.6E-39 341.4 30.7 310 10-418 29-353 (629)
24 PRK11192 ATP-dependent RNA hel 100.0 2.2E-34 4.9E-39 333.2 27.8 314 10-420 24-355 (434)
25 PRK04537 ATP-dependent RNA hel 100.0 4.4E-34 9.6E-39 338.1 29.4 311 10-418 32-365 (572)
26 PRK01297 ATP-dependent RNA hel 100.0 2.3E-34 4.9E-39 336.3 25.2 310 10-417 110-442 (475)
27 PLN00206 DEAD-box ATP-dependen 100.0 5.3E-34 1.2E-38 335.3 27.0 315 10-419 144-477 (518)
28 PTZ00424 helicase 45; Provisio 100.0 2.6E-33 5.7E-38 321.3 28.2 313 10-421 51-378 (401)
29 COG0513 SrmB Superfamily II DN 100.0 7.7E-33 1.7E-37 323.5 27.7 311 10-417 52-380 (513)
30 COG1204 Superfamily II helicas 100.0 4.5E-32 9.8E-37 325.2 30.9 424 13-511 36-527 (766)
31 TIGR03817 DECH_helic helicase/ 100.0 1E-32 2.3E-37 334.3 25.4 329 9-417 36-386 (742)
32 KOG0345 ATP-dependent RNA heli 100.0 3E-32 6.5E-37 293.4 24.2 330 11-435 30-385 (567)
33 COG1202 Superfamily II helicas 100.0 5.4E-32 1.2E-36 296.4 26.1 431 20-547 228-702 (830)
34 TIGR00614 recQ_fam ATP-depende 100.0 1E-31 2.2E-36 313.0 29.4 307 11-420 13-336 (470)
35 COG1111 MPH1 ERCC4-like helica 100.0 5.2E-31 1.1E-35 288.3 25.9 380 7-417 13-481 (542)
36 PRK11057 ATP-dependent DNA hel 100.0 3.1E-31 6.8E-36 316.9 25.6 306 10-420 26-346 (607)
37 PRK13767 ATP-dependent helicas 100.0 3E-31 6.5E-36 327.8 25.4 387 10-478 33-477 (876)
38 PLN03137 ATP-dependent DNA hel 100.0 9.5E-31 2.1E-35 314.7 26.1 308 10-420 461-790 (1195)
39 KOG0342 ATP-dependent RNA heli 100.0 5.6E-31 1.2E-35 285.7 19.9 317 10-417 105-437 (543)
40 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-30 2.3E-35 285.2 19.2 317 10-421 92-426 (758)
41 KOG0354 DEAD-box like helicase 100.0 7E-30 1.5E-34 295.0 25.0 386 6-417 59-529 (746)
42 KOG0338 ATP-dependent RNA heli 100.0 1.9E-30 4.1E-35 281.1 18.6 318 12-419 206-535 (691)
43 TIGR01389 recQ ATP-dependent D 100.0 1.2E-29 2.6E-34 304.1 26.3 301 11-420 15-334 (591)
44 COG1201 Lhr Lhr-like helicases 100.0 2.1E-29 4.6E-34 298.1 27.3 370 11-475 24-438 (814)
45 KOG0921 Dosage compensation co 100.0 9E-33 1.9E-37 314.0 -2.2 563 4-606 401-969 (1282)
46 KOG0333 U5 snRNP-like RNA heli 100.0 4.4E-30 9.5E-35 279.4 18.5 311 11-418 269-625 (673)
47 KOG0348 ATP-dependent RNA heli 100.0 2.9E-29 6.2E-34 273.4 24.8 358 10-428 160-567 (708)
48 KOG0328 Predicted ATP-dependen 100.0 1.5E-29 3.2E-34 256.3 19.1 316 11-421 51-377 (400)
49 PRK09751 putative ATP-dependen 100.0 2.9E-29 6.2E-34 314.2 23.3 311 29-408 1-374 (1490)
50 TIGR00580 mfd transcription-re 100.0 1.5E-28 3.2E-33 300.8 28.6 298 10-417 452-770 (926)
51 KOG0340 ATP-dependent RNA heli 100.0 4.1E-29 8.9E-34 260.9 20.1 316 12-419 32-363 (442)
52 PRK10917 ATP-dependent DNA hel 100.0 4E-28 8.7E-33 293.3 28.0 297 10-415 262-587 (681)
53 TIGR01587 cas3_core CRISPR-ass 100.0 3E-28 6.6E-33 275.1 24.5 299 26-417 1-336 (358)
54 TIGR00643 recG ATP-dependent D 100.0 1.7E-28 3.6E-33 294.7 23.0 305 4-415 228-564 (630)
55 KOG0335 ATP-dependent RNA heli 100.0 7.1E-29 1.5E-33 274.4 17.9 308 12-415 99-442 (482)
56 PRK10689 transcription-repair 100.0 1.2E-27 2.7E-32 298.7 27.3 297 10-416 601-918 (1147)
57 KOG0332 ATP-dependent RNA heli 100.0 4.7E-28 1E-32 254.3 18.9 314 11-416 114-442 (477)
58 KOG0336 ATP-dependent RNA heli 100.0 1.6E-28 3.4E-33 259.5 15.4 311 14-420 247-575 (629)
59 KOG0347 RNA helicase [RNA proc 100.0 4.9E-29 1.1E-33 272.3 11.3 325 13-417 207-570 (731)
60 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2E-27 4.3E-32 283.0 24.8 342 10-453 16-428 (844)
61 KOG0326 ATP-dependent RNA heli 100.0 2.2E-28 4.8E-33 251.5 13.4 309 12-418 110-430 (459)
62 KOG0952 DNA/RNA helicase MER3/ 100.0 5.2E-27 1.1E-31 273.0 26.4 445 12-526 113-640 (1230)
63 KOG0339 ATP-dependent RNA heli 100.0 1.5E-27 3.2E-32 258.2 17.1 317 11-420 247-578 (731)
64 KOG0350 DEAD-box ATP-dependent 99.9 4.3E-27 9.2E-32 255.2 18.9 321 10-418 160-541 (620)
65 PRK13766 Hef nuclease; Provisi 99.9 8E-26 1.7E-30 279.9 31.5 382 7-419 13-481 (773)
66 PHA02558 uvsW UvsW helicase; P 99.9 1.3E-25 2.7E-30 263.4 27.9 317 8-409 113-443 (501)
67 KOG0346 RNA helicase [RNA proc 99.9 9.6E-27 2.1E-31 248.8 15.6 301 12-416 44-409 (569)
68 TIGR03158 cas3_cyano CRISPR-as 99.9 2.2E-25 4.7E-30 250.4 26.3 303 13-403 1-357 (357)
69 COG1205 Distinct helicase fami 99.9 5.9E-25 1.3E-29 267.7 25.2 329 7-415 68-420 (851)
70 KOG4284 DEAD box protein [Tran 99.9 9.8E-26 2.1E-30 249.8 13.8 318 11-418 49-380 (980)
71 COG0514 RecQ Superfamily II DN 99.9 9.3E-25 2E-29 250.4 20.2 301 13-420 21-340 (590)
72 KOG0341 DEAD-box protein abstr 99.9 4.4E-26 9.6E-31 239.5 7.9 312 14-419 197-530 (610)
73 KOG0948 Nuclear exosomal RNA h 99.9 4.6E-25 9.9E-30 248.2 16.1 363 10-418 130-540 (1041)
74 KOG0334 RNA helicase [RNA proc 99.9 1.2E-24 2.7E-29 256.1 18.2 311 9-416 387-719 (997)
75 KOG0344 ATP-dependent RNA heli 99.9 3.5E-24 7.5E-29 238.4 20.5 322 4-419 156-497 (593)
76 TIGR00603 rad25 DNA repair hel 99.9 2.3E-23 5E-28 246.2 28.3 325 5-419 251-609 (732)
77 KOG0947 Cytoplasmic exosomal R 99.9 7E-24 1.5E-28 244.1 20.3 367 9-417 297-723 (1248)
78 KOG0951 RNA helicase BRR2, DEA 99.9 3.1E-23 6.7E-28 243.9 25.8 422 12-504 312-825 (1674)
79 COG4581 Superfamily II RNA hel 99.9 4.7E-23 1E-27 247.3 23.3 360 7-415 117-535 (1041)
80 KOG0327 Translation initiation 99.9 8.2E-24 1.8E-28 224.9 14.3 316 9-422 49-375 (397)
81 PRK09401 reverse gyrase; Revie 99.9 1.3E-22 2.8E-27 254.3 25.9 273 8-372 79-410 (1176)
82 PRK05580 primosome assembly pr 99.9 5.6E-22 1.2E-26 239.1 25.7 358 8-412 143-544 (679)
83 PRK09694 helicase Cas3; Provis 99.9 8.6E-22 1.9E-26 239.1 26.5 324 9-406 286-663 (878)
84 COG1061 SSL2 DNA or RNA helica 99.9 4.9E-21 1.1E-25 220.5 29.6 324 7-407 34-378 (442)
85 TIGR03714 secA2 accessory Sec 99.9 3.1E-21 6.8E-26 228.1 27.2 349 4-417 63-537 (762)
86 PRK11448 hsdR type I restricti 99.9 8.6E-21 1.9E-25 236.7 30.5 358 8-415 412-813 (1123)
87 COG4098 comFA Superfamily II D 99.9 4.4E-21 9.4E-26 200.4 23.2 287 15-405 107-401 (441)
88 PRK14701 reverse gyrase; Provi 99.9 1.5E-21 3.3E-26 249.5 23.8 312 9-417 79-456 (1638)
89 COG1200 RecG RecG-like helicas 99.9 1.2E-21 2.7E-26 223.8 19.9 305 5-418 256-592 (677)
90 TIGR00595 priA primosomal prot 99.9 7.7E-22 1.7E-26 229.9 18.5 332 28-412 1-376 (505)
91 KOG0352 ATP-dependent DNA heli 99.9 1.4E-21 3.1E-26 208.2 17.4 312 13-420 24-365 (641)
92 KOG0337 ATP-dependent RNA heli 99.9 1E-21 2.2E-26 209.8 16.2 310 13-417 47-368 (529)
93 TIGR01054 rgy reverse gyrase. 99.9 1.2E-20 2.6E-25 237.1 27.9 276 7-374 76-411 (1171)
94 KOG0950 DNA polymerase theta/e 99.9 2.1E-20 4.5E-25 217.8 23.6 342 8-419 222-613 (1008)
95 PRK09200 preprotein translocas 99.8 9E-20 2E-24 217.8 25.6 117 274-417 415-541 (790)
96 COG1197 Mfd Transcription-repa 99.8 9.5E-20 2E-24 219.1 23.7 282 26-417 617-913 (1139)
97 TIGR00963 secA preprotein tran 99.8 5.6E-20 1.2E-24 216.2 21.3 107 284-417 403-517 (745)
98 KOG0351 ATP-dependent DNA heli 99.8 3.7E-20 8.1E-25 224.2 19.5 308 12-422 267-597 (941)
99 PRK04914 ATP-dependent helicas 99.8 5.8E-19 1.3E-23 215.9 22.9 118 276-417 483-605 (956)
100 PRK12898 secA preprotein trans 99.8 1.3E-18 2.8E-23 203.9 24.2 105 286-417 473-586 (656)
101 PF07717 OB_NTP_bind: Oligonuc 99.8 1E-19 2.2E-24 170.7 7.3 106 595-706 1-114 (114)
102 KOG0353 ATP-dependent DNA heli 99.8 1.7E-17 3.6E-22 174.5 18.1 276 12-372 97-396 (695)
103 PF04408 HA2: Helicase associa 99.7 3.3E-18 7.2E-23 156.7 9.5 91 468-558 1-102 (102)
104 COG1203 CRISPR-associated heli 99.7 8E-17 1.7E-21 196.4 22.5 313 9-414 195-547 (733)
105 COG4096 HsdR Type I site-speci 99.7 1.7E-16 3.7E-21 184.0 22.2 368 11-441 167-572 (875)
106 PF00270 DEAD: DEAD/DEAH box h 99.7 2.9E-16 6.3E-21 157.4 17.9 154 12-172 2-166 (169)
107 PRK13104 secA preprotein trans 99.7 9.2E-16 2E-20 183.2 24.1 127 4-136 75-213 (896)
108 KOG0329 ATP-dependent RNA heli 99.7 9.4E-17 2E-21 161.4 11.4 157 11-170 66-230 (387)
109 KOG0949 Predicted helicase, DE 99.7 1E-15 2.2E-20 177.6 20.6 159 8-177 510-682 (1330)
110 cd00268 DEADc DEAD-box helicas 99.7 1.5E-15 3.3E-20 157.4 17.4 158 10-170 22-187 (203)
111 PRK12904 preprotein translocas 99.7 1.9E-15 4.1E-20 180.5 20.2 125 5-135 75-211 (830)
112 KOG0349 Putative DEAD-box RNA 99.6 1.1E-15 2.3E-20 163.6 13.4 303 59-414 288-612 (725)
113 smart00847 HA2 Helicase associ 99.6 3.7E-16 8E-21 140.6 8.3 90 468-558 1-92 (92)
114 TIGR00348 hsdR type I site-spe 99.6 1.6E-14 3.6E-19 174.5 24.9 135 24-167 263-402 (667)
115 PRK12906 secA preprotein trans 99.6 7.4E-15 1.6E-19 174.7 20.6 107 284-417 438-553 (796)
116 COG1198 PriA Primosomal protei 99.6 9.7E-15 2.1E-19 173.0 19.4 353 8-412 197-598 (730)
117 PRK13107 preprotein translocas 99.6 1.8E-13 3.9E-18 163.3 22.5 125 5-135 76-212 (908)
118 PRK12899 secA preprotein trans 99.6 2.6E-13 5.6E-18 162.1 23.8 121 10-136 93-226 (970)
119 PLN03142 Probable chromatin-re 99.5 5E-13 1.1E-17 164.7 23.7 111 285-420 486-602 (1033)
120 KOG0953 Mitochondrial RNA heli 99.5 2.6E-13 5.7E-18 150.4 14.9 275 24-417 191-477 (700)
121 smart00487 DEXDc DEAD-like hel 99.5 1.1E-12 2.3E-17 133.9 17.1 157 7-168 6-171 (201)
122 COG1110 Reverse gyrase [DNA re 99.5 3.1E-12 6.8E-17 150.9 21.9 273 8-373 81-418 (1187)
123 TIGR01407 dinG_rel DnaQ family 99.5 8.4E-12 1.8E-16 155.6 26.1 126 277-413 666-811 (850)
124 cd00046 DEXDc DEAD-like helica 99.4 1.9E-12 4E-17 124.2 14.5 137 25-167 1-144 (144)
125 TIGR02562 cas3_yersinia CRISPR 99.4 3.9E-11 8.5E-16 144.6 25.6 97 290-408 760-882 (1110)
126 PF07652 Flavi_DEAD: Flaviviru 99.4 7.5E-12 1.6E-16 118.8 12.4 135 22-169 2-138 (148)
127 PF04851 ResIII: Type III rest 99.3 5.7E-12 1.2E-16 127.7 11.0 147 8-168 2-183 (184)
128 cd00079 HELICc Helicase superf 99.3 3.7E-12 7.9E-17 121.7 8.9 104 285-413 27-131 (131)
129 KOG1123 RNA polymerase II tran 99.3 5.7E-11 1.2E-15 130.1 16.8 323 10-418 303-654 (776)
130 KOG4150 Predicted ATP-dependen 99.3 4.2E-11 9.1E-16 132.5 14.8 314 10-409 287-632 (1034)
131 PRK12326 preprotein translocas 99.3 3.5E-10 7.5E-15 132.5 23.1 125 5-135 72-208 (764)
132 PRK07246 bifunctional ATP-depe 99.2 2.9E-09 6.3E-14 131.4 29.3 127 274-413 637-780 (820)
133 PF00271 Helicase_C: Helicase 99.2 7.8E-12 1.7E-16 108.6 3.5 71 318-406 8-78 (78)
134 TIGR00631 uvrb excinuclease AB 99.2 3.4E-11 7.4E-16 144.3 9.4 125 273-417 428-553 (655)
135 PRK05298 excinuclease ABC subu 99.1 9.1E-11 2E-15 141.7 10.2 123 274-416 433-556 (652)
136 KOG0951 RNA helicase BRR2, DEA 99.1 3.7E-09 7.9E-14 126.9 19.7 321 22-428 1157-1508(1674)
137 KOG0385 Chromatin remodeling c 99.1 9.7E-09 2.1E-13 118.3 22.3 372 10-420 168-602 (971)
138 PRK13103 secA preprotein trans 99.1 4.3E-09 9.3E-14 126.4 19.0 126 5-136 76-213 (913)
139 PRK12900 secA preprotein trans 99.0 8.8E-10 1.9E-14 132.6 12.4 108 284-418 596-712 (1025)
140 KOG0387 Transcription-coupled 99.0 1.8E-08 3.9E-13 116.7 22.2 376 10-420 206-661 (923)
141 PRK08074 bifunctional ATP-depe 99.0 2.4E-08 5.3E-13 125.5 25.0 128 276-413 743-890 (928)
142 smart00490 HELICc helicase sup 99.0 4.3E-10 9.4E-15 97.8 4.8 71 318-406 12-82 (82)
143 PRK12903 secA preprotein trans 98.9 1.2E-07 2.7E-12 113.0 23.7 111 275-413 414-535 (925)
144 KOG0390 DNA repair protein, SN 98.9 6E-08 1.3E-12 115.3 21.1 161 10-177 239-424 (776)
145 PRK14873 primosome assembly pr 98.9 7.6E-09 1.6E-13 124.0 13.7 133 28-174 164-310 (665)
146 CHL00122 secA preprotein trans 98.9 6.4E-08 1.4E-12 116.0 20.5 125 5-135 70-206 (870)
147 PF02399 Herpes_ori_bp: Origin 98.9 9.1E-08 2E-12 113.4 21.5 323 22-419 47-390 (824)
148 COG4889 Predicted helicase [Ge 98.8 6E-09 1.3E-13 120.7 5.3 106 288-411 462-578 (1518)
149 KOG0384 Chromodomain-helicase 98.7 2.2E-07 4.8E-12 112.3 17.6 144 273-443 688-835 (1373)
150 COG0556 UvrB Helicase subunit 98.7 2E-07 4.3E-12 104.2 15.1 110 284-413 444-553 (663)
151 KOG0392 SNF2 family DNA-depend 98.7 9.1E-07 2E-11 106.8 21.5 116 286-420 1340-1457(1549)
152 PRK12902 secA preprotein trans 98.6 4.6E-06 9.9E-11 100.3 24.4 125 5-135 79-215 (939)
153 TIGR00604 rad3 DNA repair heli 98.6 1.9E-06 4.1E-11 105.9 22.1 141 274-419 511-675 (705)
154 cd00048 DSRM Double-stranded R 98.5 3.3E-07 7.2E-12 76.9 7.7 63 812-875 1-68 (68)
155 smart00358 DSRM Double-strande 98.4 7.6E-07 1.7E-11 74.6 7.5 62 813-876 1-67 (67)
156 KOG1000 Chromatin remodeling p 98.4 3.5E-05 7.6E-10 85.7 22.0 112 284-417 490-603 (689)
157 PF00035 dsrm: Double-stranded 98.4 5.6E-07 1.2E-11 75.5 6.4 63 813-875 1-67 (67)
158 PHA02701 ORF020 dsRNA-binding 98.4 6.2E-07 1.3E-11 88.2 7.4 67 811-878 108-178 (183)
159 TIGR03117 cas_csf4 CRISPR-asso 98.4 3.5E-06 7.7E-11 100.2 14.6 62 14-78 6-67 (636)
160 PHA03103 double-strand RNA-bin 98.4 8.5E-07 1.8E-11 87.9 7.8 66 811-877 109-177 (183)
161 PF00176 SNF2_N: SNF2 family N 98.3 4.7E-06 1E-10 91.4 11.8 133 22-168 23-173 (299)
162 COG0610 Type I site-specific r 98.1 0.00011 2.4E-09 92.4 21.0 132 25-167 274-413 (962)
163 PRK12371 ribonuclease III; Rev 98.1 5.6E-06 1.2E-10 87.4 7.7 67 811-877 161-231 (235)
164 PRK14718 ribonuclease III; Pro 98.1 6.3E-06 1.4E-10 91.7 8.2 66 811-876 151-221 (467)
165 PRK12372 ribonuclease III; Rev 98.1 7.8E-06 1.7E-10 90.6 8.1 65 812-877 152-222 (413)
166 PF00448 SRP54: SRP54-type pro 98.0 3E-05 6.4E-10 79.8 11.2 128 25-172 2-130 (196)
167 PRK12723 flagellar biosynthesi 98.0 8.4E-05 1.8E-09 84.0 15.2 131 24-177 174-307 (388)
168 PF13401 AAA_22: AAA domain; P 98.0 1.4E-05 3E-10 76.4 7.3 118 22-165 2-124 (131)
169 PRK00102 rnc ribonuclease III; 98.0 1.7E-05 3.7E-10 84.0 7.8 67 811-877 158-228 (229)
170 PF13245 AAA_19: Part of AAA d 97.9 4E-05 8.6E-10 66.1 7.9 59 18-77 4-62 (76)
171 TIGR00596 rad1 DNA repair prot 97.9 6.3E-05 1.4E-09 92.2 11.8 66 102-169 7-74 (814)
172 KOG0389 SNF2 family DNA-depend 97.8 0.0011 2.4E-08 78.0 19.9 114 285-420 776-891 (941)
173 PF13604 AAA_30: AAA domain; P 97.8 0.00011 2.3E-09 75.8 10.4 121 11-166 3-130 (196)
174 COG1419 FlhF Flagellar GTP-bin 97.7 0.00059 1.3E-08 76.1 15.4 130 24-177 203-333 (407)
175 PF02562 PhoH: PhoH-like prote 97.7 0.00013 2.8E-09 75.1 9.1 56 9-67 4-59 (205)
176 COG0571 Rnc dsRNA-specific rib 97.7 0.00013 2.7E-09 76.5 8.5 68 811-878 161-232 (235)
177 PF14709 DND1_DSRM: double str 97.7 0.00012 2.7E-09 63.5 7.0 65 812-876 2-80 (80)
178 PRK12901 secA preprotein trans 97.7 0.00025 5.5E-09 86.6 12.0 104 284-414 626-738 (1112)
179 TIGR01447 recD exodeoxyribonuc 97.7 0.00042 9.2E-09 82.8 13.6 141 12-166 148-295 (586)
180 PRK11889 flhF flagellar biosyn 97.6 0.00088 1.9E-08 74.9 14.7 123 25-170 242-365 (436)
181 TIGR02191 RNaseIII ribonucleas 97.6 0.00013 2.8E-09 76.7 7.5 65 810-874 151-219 (220)
182 PRK10536 hypothetical protein; 97.6 0.00034 7.4E-09 74.0 10.3 58 8-68 58-115 (262)
183 PRK10875 recD exonuclease V su 97.6 0.00055 1.2E-08 82.0 12.8 140 12-166 155-301 (615)
184 PRK14722 flhF flagellar biosyn 97.6 0.00079 1.7E-08 75.6 13.2 127 22-172 135-262 (374)
185 KOG0386 Chromatin remodeling c 97.6 0.00049 1.1E-08 82.8 12.0 112 284-420 724-841 (1157)
186 KOG1002 Nucleotide excision re 97.6 0.0032 6.9E-08 70.4 17.4 116 282-419 634-751 (791)
187 COG0553 HepA Superfamily II DN 97.5 0.0022 4.9E-08 81.3 19.0 111 288-420 713-825 (866)
188 KOG1803 DNA helicase [Replicat 97.5 0.00016 3.6E-09 82.9 7.7 64 10-78 186-250 (649)
189 PRK11747 dinG ATP-dependent DN 97.5 0.00053 1.2E-08 84.1 12.4 126 272-413 522-671 (697)
190 PRK05703 flhF flagellar biosyn 97.4 0.0023 4.9E-08 73.8 15.4 127 24-174 221-349 (424)
191 PRK12726 flagellar biosynthesi 97.4 0.0011 2.5E-08 73.7 12.0 132 22-176 204-336 (407)
192 COG0653 SecA Preprotein transl 97.4 0.0082 1.8E-07 72.7 19.2 124 6-135 75-210 (822)
193 cd00009 AAA The AAA+ (ATPases 97.4 0.0025 5.5E-08 61.0 12.5 32 14-45 7-40 (151)
194 TIGR01448 recD_rel helicase, p 97.4 0.0016 3.5E-08 80.0 13.6 126 7-166 321-452 (720)
195 PF06862 DUF1253: Protein of u 97.3 0.042 9.1E-07 62.9 23.7 116 283-420 297-418 (442)
196 PF09848 DUF2075: Uncharacteri 97.3 0.00084 1.8E-08 75.9 10.2 92 25-136 2-94 (352)
197 PF05729 NACHT: NACHT domain 97.3 0.00059 1.3E-08 67.6 7.5 62 128-189 84-152 (166)
198 PRK12724 flagellar biosynthesi 97.2 0.0059 1.3E-07 69.2 14.4 128 24-177 223-357 (432)
199 PRK14974 cell division protein 97.2 0.0037 7.9E-08 69.6 12.5 126 25-170 141-267 (336)
200 PRK12727 flagellar biosynthesi 97.1 0.0038 8.2E-08 72.5 12.7 129 21-173 347-475 (559)
201 PRK06526 transposase; Provisio 97.1 0.0035 7.6E-08 67.2 11.7 29 19-47 93-121 (254)
202 PRK15483 type III restriction- 97.1 0.0019 4.2E-08 79.7 10.5 137 25-169 60-240 (986)
203 PRK04296 thymidine kinase; Pro 97.1 0.0012 2.6E-08 67.7 7.5 26 24-49 2-27 (190)
204 PF12340 DUF3638: Protein of u 97.1 0.0023 4.9E-08 66.6 9.2 129 2-136 16-183 (229)
205 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.0015 3.2E-08 70.1 7.7 126 5-136 71-208 (266)
206 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0082 1.8E-07 74.2 14.8 123 8-165 351-475 (744)
207 smart00489 DEXDc3 DEAD-like he 97.0 0.0026 5.5E-08 69.8 8.9 70 8-77 7-81 (289)
208 smart00488 DEXDc2 DEAD-like he 97.0 0.0026 5.5E-08 69.8 8.9 70 8-77 7-81 (289)
209 PRK08181 transposase; Validate 97.0 0.0061 1.3E-07 65.8 11.5 118 20-178 102-219 (269)
210 PF13086 AAA_11: AAA domain; P 96.9 0.0024 5.2E-08 67.0 8.2 70 10-79 2-75 (236)
211 PF13872 AAA_34: P-loop contai 96.9 0.0061 1.3E-07 65.8 10.9 140 24-167 62-220 (303)
212 PHA03333 putative ATPase subun 96.9 0.022 4.7E-07 67.6 15.9 148 16-178 180-343 (752)
213 PF05970 PIF1: PIF1-like helic 96.9 0.0043 9.3E-08 70.4 9.9 67 11-82 3-77 (364)
214 PRK13889 conjugal transfer rel 96.8 0.011 2.3E-07 74.3 13.9 125 7-166 344-470 (988)
215 PF13307 Helicase_C_2: Helicas 96.8 0.00092 2E-08 67.1 3.4 123 285-414 8-146 (167)
216 PRK14723 flhF flagellar biosyn 96.8 0.016 3.4E-07 70.6 14.1 126 24-173 185-311 (767)
217 PRK14721 flhF flagellar biosyn 96.7 0.024 5.2E-07 64.9 14.3 129 22-174 189-318 (420)
218 PRK06731 flhF flagellar biosyn 96.7 0.033 7.1E-07 60.2 14.6 123 25-170 76-199 (270)
219 PRK10416 signal recognition pa 96.7 0.046 1E-06 60.6 15.8 127 24-170 114-247 (318)
220 PRK07003 DNA polymerase III su 96.6 0.012 2.6E-07 70.9 11.5 50 113-164 107-156 (830)
221 PF00580 UvrD-helicase: UvrD/R 96.6 0.0043 9.2E-08 68.4 7.2 69 11-82 2-70 (315)
222 PF05127 Helicase_RecD: Helica 96.6 0.00081 1.8E-08 67.5 1.0 117 28-168 1-124 (177)
223 PF13173 AAA_14: AAA domain 96.6 0.013 2.8E-07 56.0 9.3 26 23-48 1-26 (128)
224 smart00382 AAA ATPases associa 96.5 0.0059 1.3E-07 57.8 6.9 24 24-47 2-25 (148)
225 PRK06835 DNA replication prote 96.5 0.023 5.1E-07 63.2 12.4 54 123-177 244-298 (329)
226 KOG0391 SNF2 family DNA-depend 96.5 0.011 2.5E-07 72.1 10.2 115 284-420 1274-1390(1958)
227 PRK06995 flhF flagellar biosyn 96.5 0.035 7.7E-07 64.5 14.1 127 23-173 255-382 (484)
228 PRK00771 signal recognition pa 96.5 0.043 9.2E-07 63.4 14.5 123 25-169 96-219 (437)
229 KOG0952 DNA/RNA helicase MER3/ 96.4 0.0011 2.3E-08 80.4 1.1 167 7-181 910-1108(1230)
230 COG1199 DinG Rad3-related DNA 96.4 0.024 5.2E-07 69.7 12.7 121 285-413 478-614 (654)
231 TIGR03499 FlhF flagellar biosy 96.4 0.016 3.5E-07 63.2 9.9 89 23-134 193-281 (282)
232 TIGR00064 ftsY signal recognit 96.3 0.059 1.3E-06 58.5 14.0 127 25-172 73-207 (272)
233 PRK09183 transposase/IS protei 96.2 0.059 1.3E-06 58.1 13.1 27 21-47 99-125 (259)
234 TIGR00376 DNA helicase, putati 96.2 0.013 2.9E-07 71.1 8.7 65 10-79 158-223 (637)
235 PRK14956 DNA polymerase III su 96.2 0.013 2.9E-07 67.7 8.2 29 18-46 31-62 (484)
236 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.057 1.2E-06 56.7 12.4 25 23-47 37-61 (226)
237 PRK07952 DNA replication prote 96.1 0.083 1.8E-06 56.3 13.4 115 25-178 100-215 (244)
238 PRK08116 hypothetical protein; 96.1 0.053 1.2E-06 58.7 12.2 52 123-176 176-229 (268)
239 TIGR03015 pepcterm_ATPase puta 96.1 0.032 7E-07 60.3 10.3 22 24-45 43-64 (269)
240 PRK08903 DnaA regulatory inact 96.0 0.053 1.1E-06 57.2 11.5 24 23-46 41-64 (227)
241 KOG4439 RNA polymerase II tran 96.0 0.36 7.8E-06 57.0 18.5 88 318-420 771-861 (901)
242 PRK08691 DNA polymerase III su 96.0 0.031 6.7E-07 67.2 10.3 44 119-164 113-156 (709)
243 TIGR01425 SRP54_euk signal rec 96.0 0.057 1.2E-06 61.9 12.0 123 25-168 101-225 (429)
244 PRK14949 DNA polymerase III su 96.0 0.023 4.9E-07 69.9 9.2 42 120-163 114-155 (944)
245 PRK13826 Dtr system oriT relax 95.9 0.097 2.1E-06 66.5 14.6 125 7-166 379-505 (1102)
246 TIGR02640 gas_vesic_GvpN gas v 95.9 0.065 1.4E-06 57.9 11.6 35 10-44 7-41 (262)
247 PRK14961 DNA polymerase III su 95.9 0.028 6.1E-07 63.8 9.1 50 113-164 107-156 (363)
248 PRK07764 DNA polymerase III su 95.9 0.053 1.2E-06 67.4 12.1 44 119-164 114-157 (824)
249 PRK10867 signal recognition pa 95.9 0.064 1.4E-06 61.8 11.9 125 25-168 101-226 (433)
250 PRK12402 replication factor C 95.9 0.049 1.1E-06 61.0 11.0 35 13-47 23-59 (337)
251 PRK07994 DNA polymerase III su 95.9 0.039 8.4E-07 66.5 10.5 48 114-163 108-155 (647)
252 PRK14957 DNA polymerase III su 95.9 0.026 5.6E-07 66.8 8.9 49 113-164 107-156 (546)
253 PRK09112 DNA polymerase III su 95.8 0.032 6.9E-07 62.8 9.1 51 113-165 129-179 (351)
254 PF01695 IstB_IS21: IstB-like 95.8 0.015 3.3E-07 58.9 5.9 117 20-178 43-160 (178)
255 PRK12323 DNA polymerase III su 95.8 0.073 1.6E-06 63.5 12.2 49 115-165 114-162 (700)
256 KOG1802 RNA helicase nonsense 95.8 0.015 3.2E-07 67.5 6.1 66 10-79 411-476 (935)
257 TIGR00959 ffh signal recogniti 95.7 0.1 2.2E-06 60.2 12.7 125 25-168 100-225 (428)
258 PRK12377 putative replication 95.7 0.32 6.8E-06 52.0 15.6 22 24-45 101-122 (248)
259 cd03115 SRP The signal recogni 95.7 0.14 3E-06 51.5 12.3 125 26-170 2-127 (173)
260 PRK08727 hypothetical protein; 95.7 0.072 1.6E-06 56.5 10.6 19 25-43 42-60 (233)
261 TIGR00678 holB DNA polymerase 95.6 0.034 7.4E-07 56.8 7.8 31 16-46 3-36 (188)
262 PRK14958 DNA polymerase III su 95.6 0.042 9.1E-07 64.9 9.4 43 120-164 114-156 (509)
263 PRK14952 DNA polymerase III su 95.6 0.087 1.9E-06 63.0 12.0 48 115-164 108-155 (584)
264 PRK00411 cdc6 cell division co 95.6 0.096 2.1E-06 60.1 12.2 21 25-45 56-76 (394)
265 KOG2340 Uncharacterized conser 95.6 0.54 1.2E-05 53.9 17.1 112 286-419 552-670 (698)
266 KOG2373 Predicted mitochondria 95.5 0.0076 1.7E-07 65.0 2.5 126 20-152 269-411 (514)
267 PRK14951 DNA polymerase III su 95.5 0.057 1.2E-06 64.9 10.0 50 113-164 112-161 (618)
268 PRK14964 DNA polymerase III su 95.5 0.055 1.2E-06 63.2 9.6 49 114-164 105-153 (491)
269 PRK06893 DNA replication initi 95.5 0.15 3.1E-06 54.0 12.0 47 123-171 89-138 (229)
270 PTZ00112 origin recognition co 95.5 0.15 3.1E-06 62.4 13.0 23 26-49 783-805 (1164)
271 PRK14963 DNA polymerase III su 95.4 0.034 7.3E-07 65.6 7.7 46 116-163 107-152 (504)
272 PRK06921 hypothetical protein; 95.4 0.1 2.3E-06 56.4 10.8 27 23-50 116-142 (266)
273 PRK14960 DNA polymerase III su 95.4 0.063 1.4E-06 64.2 9.6 38 718-755 611-648 (702)
274 cd01124 KaiC KaiC is a circadi 95.4 0.027 5.8E-07 57.2 5.9 46 26-77 1-46 (187)
275 cd01120 RecA-like_NTPases RecA 95.4 0.12 2.7E-06 50.4 10.5 24 26-49 1-24 (165)
276 COG1474 CDC6 Cdc6-related prot 95.3 0.13 2.9E-06 58.1 11.6 105 25-150 43-149 (366)
277 PF13177 DNA_pol3_delta2: DNA 95.2 0.079 1.7E-06 52.8 8.6 131 17-167 9-142 (162)
278 PRK09111 DNA polymerase III su 95.2 0.11 2.3E-06 62.5 11.2 50 113-164 120-169 (598)
279 TIGR02928 orc1/cdc6 family rep 95.2 0.13 2.8E-06 58.4 11.4 24 25-49 41-64 (365)
280 PRK05642 DNA replication initi 95.2 0.13 2.8E-06 54.6 10.7 17 25-41 46-62 (234)
281 PRK00149 dnaA chromosomal repl 95.2 0.16 3.4E-06 59.5 12.2 36 25-63 149-184 (450)
282 PRK14969 DNA polymerase III su 95.2 0.15 3.2E-06 60.8 12.0 49 114-164 108-156 (527)
283 PRK11331 5-methylcytosine-spec 95.2 0.11 2.3E-06 59.7 10.3 33 13-45 183-215 (459)
284 COG1484 DnaC DNA replication p 95.1 0.3 6.4E-06 52.5 13.2 119 16-177 97-218 (254)
285 PRK11747 dinG ATP-dependent DN 95.1 0.092 2E-06 64.7 10.5 55 16-74 36-95 (697)
286 PHA02533 17 large terminase pr 95.1 0.49 1.1E-05 56.2 16.1 157 7-177 57-220 (534)
287 KOG0989 Replication factor C, 95.1 0.045 9.7E-07 58.8 6.5 124 12-167 39-169 (346)
288 TIGR02760 TraI_TIGR conjugativ 95.1 0.22 4.7E-06 67.8 14.5 138 7-166 427-566 (1960)
289 PRK08533 flagellar accessory p 95.0 0.072 1.6E-06 56.4 8.1 41 21-64 21-61 (230)
290 PRK14962 DNA polymerase III su 95.0 0.13 2.8E-06 60.2 10.9 29 18-46 27-58 (472)
291 COG1875 NYN ribonuclease and A 95.0 0.17 3.7E-06 55.7 10.8 57 8-66 227-285 (436)
292 PRK07471 DNA polymerase III su 95.0 0.24 5.3E-06 56.1 12.7 63 103-167 119-181 (365)
293 KOG3732 Staufen and related do 95.0 0.075 1.6E-06 57.5 7.9 67 809-876 140-210 (339)
294 PHA02544 44 clamp loader, smal 95.0 0.25 5.4E-06 54.8 12.6 39 124-164 99-138 (316)
295 KOG2777 tRNA-specific adenosin 94.9 0.057 1.2E-06 62.4 7.3 64 810-879 89-156 (542)
296 COG3421 Uncharacterized protei 94.9 0.2 4.3E-06 58.1 11.5 138 29-169 2-167 (812)
297 PF01637 Arch_ATPase: Archaeal 94.9 0.063 1.4E-06 56.1 7.3 32 14-45 8-41 (234)
298 PF05621 TniB: Bacterial TniB 94.9 0.18 3.8E-06 54.8 10.6 123 25-168 62-190 (302)
299 PHA03368 DNA packaging termina 94.9 0.24 5.2E-06 58.9 12.3 145 16-177 247-400 (738)
300 PHA02244 ATPase-like protein 94.9 0.11 2.4E-06 58.1 9.2 34 12-45 107-140 (383)
301 PRK08939 primosomal protein Dn 94.9 0.53 1.1E-05 52.0 14.6 113 23-176 155-269 (306)
302 PF03354 Terminase_1: Phage Te 94.9 0.077 1.7E-06 62.6 8.5 148 13-167 2-164 (477)
303 PRK06645 DNA polymerase III su 94.9 0.091 2E-06 61.9 9.0 22 25-46 44-65 (507)
304 PRK14959 DNA polymerase III su 94.9 0.1 2.2E-06 62.5 9.4 30 17-46 28-60 (624)
305 PRK14955 DNA polymerase III su 94.8 0.091 2E-06 60.4 8.8 31 16-46 27-60 (397)
306 TIGR00362 DnaA chromosomal rep 94.8 0.29 6.3E-06 56.5 13.0 36 25-63 137-172 (405)
307 PRK05896 DNA polymerase III su 94.8 0.12 2.5E-06 61.7 9.6 30 16-45 27-59 (605)
308 PF00308 Bac_DnaA: Bacterial d 94.8 0.22 4.7E-06 52.3 10.8 121 25-185 35-164 (219)
309 PRK14965 DNA polymerase III su 94.8 0.25 5.3E-06 59.6 12.5 50 113-164 107-156 (576)
310 PRK05707 DNA polymerase III su 94.7 0.078 1.7E-06 59.1 7.6 134 9-165 3-144 (328)
311 KOG0388 SNF2 family DNA-depend 94.7 0.18 3.9E-06 59.2 10.4 115 284-420 1042-1157(1185)
312 TIGR02881 spore_V_K stage V sp 94.7 0.22 4.8E-06 53.8 10.8 21 25-45 43-63 (261)
313 PRK14087 dnaA chromosomal repl 94.6 0.38 8.2E-06 56.1 13.3 46 25-74 142-187 (450)
314 PRK07940 DNA polymerase III su 94.6 0.25 5.4E-06 56.5 11.5 51 113-166 105-155 (394)
315 PF00004 AAA: ATPase family as 94.6 0.032 7E-07 52.8 3.6 19 27-45 1-19 (132)
316 PRK08084 DNA replication initi 94.6 0.21 4.5E-06 53.1 10.1 23 24-46 45-67 (235)
317 COG3587 Restriction endonuclea 94.5 0.13 2.8E-06 62.0 9.0 52 343-412 483-537 (985)
318 PRK00440 rfc replication facto 94.5 0.45 9.9E-06 52.6 13.2 21 25-45 39-59 (319)
319 PRK14950 DNA polymerase III su 94.5 0.13 2.8E-06 62.1 9.3 30 17-46 28-60 (585)
320 PRK08451 DNA polymerase III su 94.4 0.19 4.1E-06 59.4 10.3 43 120-164 112-154 (535)
321 PRK13833 conjugal transfer pro 94.4 0.085 1.8E-06 58.5 6.7 51 16-69 136-186 (323)
322 COG1444 Predicted P-loop ATPas 94.3 0.14 2.9E-06 62.1 8.7 122 25-168 232-357 (758)
323 COG2804 PulE Type II secretory 94.3 0.14 3.1E-06 58.9 8.5 40 8-47 240-281 (500)
324 PLN03025 replication factor C 94.2 0.3 6.6E-06 54.4 11.0 22 25-46 35-56 (319)
325 TIGR02782 TrbB_P P-type conjug 94.2 0.12 2.5E-06 57.1 7.5 92 15-135 123-214 (299)
326 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.1 2.3E-06 56.2 7.0 40 22-64 34-73 (259)
327 COG1219 ClpX ATP-dependent pro 94.2 0.12 2.5E-06 55.9 7.0 18 24-41 97-114 (408)
328 PRK06067 flagellar accessory p 94.1 0.27 5.9E-06 52.0 9.9 39 22-63 23-61 (234)
329 PRK14088 dnaA chromosomal repl 94.1 0.27 5.9E-06 57.2 10.7 36 25-63 131-166 (440)
330 PRK14948 DNA polymerase III su 94.1 0.19 4.2E-06 60.8 9.6 41 713-753 465-506 (620)
331 COG0470 HolB ATPase involved i 94.1 0.2 4.3E-06 55.6 9.2 52 112-165 96-147 (325)
332 PRK07133 DNA polymerase III su 94.0 0.19 4.2E-06 61.1 9.3 50 112-164 105-155 (725)
333 cd01122 GP4d_helicase GP4d_hel 93.9 0.073 1.6E-06 57.7 5.2 33 17-49 23-55 (271)
334 COG3973 Superfamily I DNA and 93.9 0.12 2.6E-06 60.1 6.9 71 10-82 213-284 (747)
335 COG1199 DinG Rad3-related DNA 93.9 0.14 3.1E-06 62.9 8.2 65 9-77 15-83 (654)
336 PF00931 NB-ARC: NB-ARC domain 93.9 0.16 3.5E-06 55.3 7.8 130 14-166 5-138 (287)
337 PRK05563 DNA polymerase III su 93.8 0.14 2.9E-06 61.5 7.5 37 113-151 107-143 (559)
338 TIGR03345 VI_ClpV1 type VI sec 93.8 0.3 6.6E-06 61.4 10.9 119 26-176 598-727 (852)
339 COG2256 MGS1 ATPase related to 93.8 0.45 9.7E-06 53.2 10.7 36 125-167 104-140 (436)
340 PRK14953 DNA polymerase III su 93.7 0.23 5E-06 58.4 9.0 50 112-163 106-155 (486)
341 COG1435 Tdk Thymidine kinase [ 93.6 0.3 6.5E-06 49.5 8.2 118 24-170 4-121 (201)
342 TIGR01547 phage_term_2 phage t 93.5 0.39 8.5E-06 55.2 10.6 134 25-168 2-141 (396)
343 PRK06620 hypothetical protein; 93.5 0.34 7.4E-06 50.7 9.0 18 25-42 45-62 (214)
344 TIGR02397 dnaX_nterm DNA polym 93.4 0.43 9.3E-06 53.8 10.5 38 112-151 104-141 (355)
345 PRK12422 chromosomal replicati 93.4 0.31 6.6E-06 56.8 9.4 24 25-49 142-165 (445)
346 KOG0991 Replication factor C, 93.4 0.15 3.2E-06 52.7 5.8 20 25-44 49-68 (333)
347 TIGR02880 cbbX_cfxQ probable R 93.4 0.66 1.4E-05 50.8 11.4 20 25-44 59-78 (284)
348 PRK09087 hypothetical protein; 93.4 0.82 1.8E-05 48.3 11.7 19 24-42 44-62 (226)
349 PF05496 RuvB_N: Holliday junc 93.3 0.15 3.2E-06 53.1 5.7 20 25-44 51-70 (233)
350 PRK04195 replication factor C 93.3 0.84 1.8E-05 53.9 12.9 23 24-46 39-61 (482)
351 COG0552 FtsY Signal recognitio 93.2 0.95 2.1E-05 49.7 12.0 125 25-169 140-271 (340)
352 PF01443 Viral_helicase1: Vira 93.2 0.069 1.5E-06 56.3 3.4 21 27-47 1-21 (234)
353 PTZ00293 thymidine kinase; Pro 93.2 0.5 1.1E-05 49.0 9.5 27 23-49 3-29 (211)
354 PF00437 T2SE: Type II/IV secr 93.2 0.093 2E-06 56.9 4.4 44 20-68 123-166 (270)
355 PRK13894 conjugal transfer ATP 93.2 0.17 3.7E-06 56.1 6.5 51 16-69 140-190 (319)
356 COG4626 Phage terminase-like p 93.1 0.56 1.2E-05 54.7 10.6 151 7-166 59-224 (546)
357 PRK13851 type IV secretion sys 93.1 0.13 2.9E-06 57.6 5.5 47 18-70 156-202 (344)
358 PRK14970 DNA polymerase III su 93.1 0.45 9.8E-06 54.1 10.0 29 16-44 28-59 (367)
359 PRK14954 DNA polymerase III su 93.0 0.45 9.7E-06 57.5 10.1 30 17-46 28-60 (620)
360 PRK11054 helD DNA helicase IV; 93.0 0.33 7.2E-06 59.5 9.2 106 7-134 194-301 (684)
361 CHL00181 cbbX CbbX; Provisiona 93.0 0.81 1.8E-05 50.1 11.3 23 24-46 59-81 (287)
362 TIGR02655 circ_KaiC circadian 92.9 0.21 4.6E-06 59.0 7.2 50 22-77 261-310 (484)
363 PRK04841 transcriptional regul 92.9 0.42 9.1E-06 61.1 10.5 33 14-46 19-54 (903)
364 KOG0391 SNF2 family DNA-depend 92.9 0.38 8.2E-06 59.6 9.1 148 11-167 617-775 (1958)
365 COG0541 Ffh Signal recognition 92.8 0.99 2.1E-05 51.2 11.7 133 25-177 101-236 (451)
366 KOG1805 DNA replication helica 92.8 0.28 6.1E-06 59.9 7.9 61 13-78 674-734 (1100)
367 PRK10919 ATP-dependent DNA hel 92.7 0.23 5E-06 61.1 7.4 107 10-135 3-112 (672)
368 PRK14086 dnaA chromosomal repl 92.7 0.46 1E-05 56.8 9.4 18 25-42 315-332 (617)
369 COG1618 Predicted nucleotide k 92.7 0.43 9.4E-06 46.8 7.5 111 26-155 7-130 (179)
370 PRK14971 DNA polymerase III su 92.5 0.71 1.5E-05 56.0 11.0 51 113-166 109-159 (614)
371 PRK10865 protein disaggregatio 92.5 1 2.3E-05 56.8 12.9 120 26-177 600-730 (857)
372 KOG3732 Staufen and related do 92.5 0.41 9E-06 52.0 7.9 67 811-879 38-108 (339)
373 PRK08058 DNA polymerase III su 92.4 0.17 3.6E-06 56.7 5.2 51 113-165 98-148 (329)
374 PRK06647 DNA polymerase III su 92.4 0.42 9E-06 57.3 8.7 31 16-46 27-60 (563)
375 PRK14712 conjugal transfer nic 92.4 1 2.3E-05 59.4 12.8 124 9-166 835-967 (1623)
376 PRK07399 DNA polymerase III su 92.3 0.99 2.1E-05 50.1 11.0 59 105-166 104-162 (314)
377 PRK06964 DNA polymerase III su 92.2 0.52 1.1E-05 52.8 8.7 60 105-166 112-171 (342)
378 PRK08769 DNA polymerase III su 92.1 0.72 1.6E-05 51.2 9.7 53 112-166 100-152 (319)
379 TIGR01075 uvrD DNA helicase II 92.1 0.45 9.9E-06 59.1 9.0 106 10-136 5-114 (715)
380 PF13555 AAA_29: P-loop contai 92.1 0.12 2.6E-06 42.4 2.7 18 24-41 23-40 (62)
381 PRK13900 type IV secretion sys 92.1 0.25 5.4E-06 55.2 6.1 46 19-70 155-200 (332)
382 PF06745 KaiC: KaiC; InterPro 92.0 0.24 5.2E-06 52.1 5.6 40 22-63 17-56 (226)
383 PRK06871 DNA polymerase III su 92.0 0.58 1.3E-05 52.0 8.7 53 112-166 94-146 (325)
384 TIGR02760 TraI_TIGR conjugativ 92.0 0.85 1.9E-05 62.3 11.9 124 8-166 1018-1149(1960)
385 TIGR02974 phageshock_pspF psp 92.0 1.3 2.8E-05 49.5 11.6 36 11-47 9-44 (329)
386 KOG1132 Helicase of the DEAD s 92.0 0.54 1.2E-05 57.1 8.8 28 15-42 31-58 (945)
387 cd01130 VirB11-like_ATPase Typ 91.9 0.23 5E-06 50.6 5.1 27 17-43 18-44 (186)
388 TIGR02524 dot_icm_DotB Dot/Icm 91.9 0.32 7E-06 54.9 6.7 32 17-49 126-158 (358)
389 PRK13342 recombination factor 91.8 0.86 1.9E-05 52.7 10.3 28 17-44 27-56 (413)
390 PRK11823 DNA repair protein Ra 91.8 0.26 5.7E-06 57.4 6.0 87 21-135 77-166 (446)
391 cd01128 rho_factor Transcripti 91.8 0.18 4E-06 53.9 4.3 28 20-48 12-39 (249)
392 PF03368 Dicer_dimer: Dicer di 91.8 0.25 5.4E-06 44.1 4.5 50 827-877 20-73 (90)
393 PRK11773 uvrD DNA-dependent he 91.8 0.63 1.4E-05 57.8 9.7 105 10-135 10-118 (721)
394 PF03266 NTPase_1: NTPase; In 91.7 0.81 1.7E-05 45.9 8.7 30 124-153 94-123 (168)
395 TIGR01074 rep ATP-dependent DN 91.7 0.74 1.6E-05 56.8 10.2 105 11-136 3-112 (664)
396 PRK13709 conjugal transfer nic 91.7 1.5 3.2E-05 58.8 13.3 126 9-166 967-1099(1747)
397 PF00158 Sigma54_activat: Sigm 91.7 1.1 2.5E-05 44.8 9.7 36 11-47 9-44 (168)
398 PHA00729 NTP-binding motif con 91.7 0.57 1.2E-05 49.1 7.7 29 17-45 8-38 (226)
399 TIGR00767 rho transcription te 91.6 0.22 4.7E-06 56.4 4.8 57 20-77 164-220 (415)
400 COG2805 PilT Tfp pilus assembl 91.6 0.15 3.2E-06 54.9 3.2 23 23-45 124-146 (353)
401 TIGR03877 thermo_KaiC_1 KaiC d 91.4 0.42 9E-06 50.8 6.6 51 21-77 18-68 (237)
402 cd01393 recA_like RecA is a b 91.4 0.37 7.9E-06 50.6 6.1 29 21-49 16-44 (226)
403 COG0556 UvrB Helicase subunit 91.3 0.51 1.1E-05 54.3 7.3 59 25-94 33-91 (663)
404 COG0593 DnaA ATPase involved i 91.3 2.1 4.6E-05 48.8 12.3 59 125-185 175-242 (408)
405 PRK05564 DNA polymerase III su 91.3 1.4 3.1E-05 48.9 10.9 33 13-45 12-47 (313)
406 PRK12900 secA preprotein trans 91.2 0.23 5.1E-06 61.5 4.9 118 13-136 140-269 (1025)
407 cd01121 Sms Sms (bacterial rad 91.1 0.47 1E-05 53.9 7.0 29 21-49 79-107 (372)
408 COG3267 ExeA Type II secretory 91.1 1.3 2.9E-05 46.7 9.6 58 19-81 45-103 (269)
409 PF14532 Sigma54_activ_2: Sigm 91.0 0.71 1.5E-05 44.5 7.2 31 10-40 7-37 (138)
410 COG4962 CpaF Flp pilus assembl 90.9 0.41 8.8E-06 52.7 5.9 51 14-70 162-213 (355)
411 TIGR02688 conserved hypothetic 90.8 1 2.2E-05 51.4 9.1 29 19-47 204-232 (449)
412 PRK04328 hypothetical protein; 90.6 0.54 1.2E-05 50.4 6.5 39 22-63 21-59 (249)
413 PRK00080 ruvB Holliday junctio 90.5 1 2.3E-05 50.3 9.1 20 25-44 52-71 (328)
414 PRK05973 replicative DNA helic 90.5 0.54 1.2E-05 49.8 6.3 57 15-77 55-111 (237)
415 COG0467 RAD55 RecA-superfamily 90.5 0.55 1.2E-05 50.6 6.6 51 21-77 20-70 (260)
416 TIGR03346 chaperone_ClpB ATP-d 90.5 2.2 4.7E-05 54.1 12.8 121 25-176 596-726 (852)
417 cd01129 PulE-GspE PulE/GspE Th 90.4 0.38 8.3E-06 52.0 5.3 34 12-45 66-101 (264)
418 PRK06090 DNA polymerase III su 90.4 1.8 3.8E-05 48.1 10.4 53 112-166 95-147 (319)
419 PF03237 Terminase_6: Terminas 90.2 3.5 7.6E-05 46.2 13.2 130 28-167 1-137 (384)
420 COG1221 PspF Transcriptional r 90.0 1.6 3.5E-05 49.6 9.8 31 13-43 90-120 (403)
421 PHA00149 DNA encapsidation pro 90.0 4.4 9.5E-05 43.5 12.3 142 28-177 21-171 (331)
422 PRK13341 recombination factor 89.8 2 4.3E-05 53.0 11.3 21 25-45 53-73 (725)
423 cd01131 PilT Pilus retraction 89.8 0.29 6.3E-06 50.5 3.6 20 25-44 2-21 (198)
424 PF13207 AAA_17: AAA domain; P 89.7 0.29 6.2E-06 45.8 3.2 19 26-44 1-19 (121)
425 KOG2028 ATPase related to the 89.7 1.2 2.7E-05 49.0 8.2 26 20-45 156-183 (554)
426 PRK12901 secA preprotein trans 89.7 0.47 1E-05 59.1 5.7 118 13-136 171-301 (1112)
427 TIGR02525 plasmid_TraJ plasmid 89.6 0.71 1.5E-05 52.3 6.7 42 22-66 147-188 (372)
428 TIGR01073 pcrA ATP-dependent D 89.5 1.2 2.6E-05 55.5 9.3 107 10-136 5-114 (726)
429 PRK06305 DNA polymerase III su 89.4 2.1 4.6E-05 50.0 10.6 31 16-46 28-61 (451)
430 KOG0780 Signal recognition par 89.3 2.6 5.7E-05 46.9 10.3 133 25-177 102-237 (483)
431 COG0542 clpA ATP-binding subun 89.2 2.3 5E-05 52.2 10.9 119 25-175 522-651 (786)
432 PF05894 Podovirus_Gp16: Podov 89.2 3.6 7.8E-05 44.8 11.2 134 23-166 16-160 (333)
433 TIGR00602 rad24 checkpoint pro 89.2 1.8 4E-05 52.4 10.1 22 24-45 110-131 (637)
434 PRK13695 putative NTPase; Prov 89.1 2.2 4.8E-05 42.8 9.4 20 26-45 2-21 (174)
435 PRK10436 hypothetical protein; 89.0 0.54 1.2E-05 54.8 5.3 33 12-44 204-238 (462)
436 cd00544 CobU Adenosylcobinamid 89.0 1.6 3.4E-05 43.9 8.0 45 27-79 2-46 (169)
437 COG2909 MalT ATP-dependent tra 88.9 1.6 3.4E-05 53.4 9.1 138 11-167 21-170 (894)
438 cd00983 recA RecA is a bacter 88.9 0.8 1.7E-05 50.8 6.4 29 21-49 52-80 (325)
439 TIGR02639 ClpA ATP-dependent C 88.9 2.3 4.9E-05 53.1 11.1 21 24-44 203-223 (731)
440 TIGR02785 addA_Gpos recombinat 88.9 0.59 1.3E-05 61.5 6.2 133 12-149 4-139 (1232)
441 PF12846 AAA_10: AAA-like doma 88.9 0.52 1.1E-05 51.4 4.9 43 24-71 1-43 (304)
442 KOG0741 AAA+-type ATPase [Post 88.8 2.1 4.6E-05 49.4 9.5 106 26-172 540-654 (744)
443 PF00265 TK: Thymidine kinase; 88.5 0.74 1.6E-05 46.5 5.3 37 25-66 2-38 (176)
444 COG1126 GlnQ ABC-type polar am 88.2 0.3 6.4E-06 50.3 2.2 21 21-41 25-45 (240)
445 TIGR03881 KaiC_arch_4 KaiC dom 88.1 1.1 2.4E-05 47.2 6.6 29 21-49 17-45 (229)
446 TIGR02655 circ_KaiC circadian 88.1 0.82 1.8E-05 54.0 6.2 42 21-64 18-59 (484)
447 cd03247 ABCC_cytochrome_bd The 88.1 2.4 5.1E-05 42.8 8.7 23 21-43 25-47 (178)
448 TIGR02639 ClpA ATP-dependent C 88.0 2.2 4.7E-05 53.2 10.1 19 26-44 486-504 (731)
449 cd00267 ABC_ATPase ABC (ATP-bi 88.0 1.6 3.6E-05 42.9 7.4 22 22-43 23-44 (157)
450 TIGR02788 VirB11 P-type DNA tr 88.0 0.66 1.4E-05 51.4 5.0 24 20-43 140-163 (308)
451 COG2812 DnaX DNA polymerase II 87.9 0.32 7E-06 56.9 2.5 52 112-167 106-157 (515)
452 PRK09376 rho transcription ter 87.8 0.73 1.6E-05 52.1 5.1 56 21-77 166-221 (416)
453 TIGR01817 nifA Nif-specific re 87.8 3.8 8.2E-05 49.1 11.7 35 12-47 207-241 (534)
454 PRK13764 ATPase; Provisional 87.7 0.92 2E-05 54.4 6.3 33 16-49 248-281 (602)
455 KOG2543 Origin recognition com 87.6 2.5 5.5E-05 47.1 9.0 150 5-173 5-164 (438)
456 TIGR03689 pup_AAA proteasome A 87.6 0.94 2E-05 53.4 6.1 23 24-47 216-238 (512)
457 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.6 3.5 7.5E-05 40.1 9.3 22 21-42 23-44 (144)
458 CHL00095 clpC Clp protease ATP 87.5 2.1 4.6E-05 54.0 9.7 19 26-44 541-559 (821)
459 TIGR02538 type_IV_pilB type IV 87.5 0.68 1.5E-05 55.7 5.1 34 10-43 300-335 (564)
460 TIGR01420 pilT_fam pilus retra 87.4 0.49 1.1E-05 53.3 3.6 28 17-44 114-142 (343)
461 PF03969 AFG1_ATPase: AFG1-lik 87.4 3.3 7.2E-05 46.8 10.2 110 24-172 62-173 (362)
462 COG1110 Reverse gyrase [DNA re 87.2 1.1 2.3E-05 55.5 6.4 67 285-352 124-190 (1187)
463 PF13671 AAA_33: AAA domain; P 87.2 0.52 1.1E-05 45.4 3.2 20 26-45 1-20 (143)
464 cd00984 DnaB_C DnaB helicase C 87.0 0.5 1.1E-05 50.2 3.2 36 16-51 5-40 (242)
465 TIGR00763 lon ATP-dependent pr 86.8 2 4.2E-05 54.0 8.7 22 23-44 346-367 (775)
466 TIGR03263 guanyl_kin guanylate 86.7 0.56 1.2E-05 47.3 3.3 21 24-44 1-21 (180)
467 PF13238 AAA_18: AAA domain; P 86.7 0.44 9.5E-06 44.7 2.3 17 27-43 1-17 (129)
468 COG2255 RuvB Holliday junction 86.6 1.5 3.3E-05 47.0 6.4 20 25-44 53-72 (332)
469 PRK08760 replicative DNA helic 86.6 1.5 3.1E-05 51.7 7.0 57 17-78 222-278 (476)
470 PRK05022 anaerobic nitric oxid 86.6 4.4 9.6E-05 48.2 11.2 31 11-41 197-227 (509)
471 TIGR03880 KaiC_arch_3 KaiC dom 86.5 1.5 3.2E-05 46.1 6.4 50 22-77 14-63 (224)
472 TIGR02237 recomb_radB DNA repa 86.4 1.5 3.3E-05 45.3 6.4 39 22-63 10-48 (209)
473 PF12775 AAA_7: P-loop contain 86.4 0.91 2E-05 49.3 4.9 25 21-45 30-54 (272)
474 TIGR02533 type_II_gspE general 86.3 0.78 1.7E-05 54.1 4.6 35 10-44 226-262 (486)
475 PRK07993 DNA polymerase III su 86.1 0.79 1.7E-05 51.3 4.3 60 105-166 88-147 (334)
476 PF13481 AAA_25: AAA domain; P 86.1 1.6 3.5E-05 44.4 6.3 58 23-81 31-93 (193)
477 TIGR02868 CydC thiol reductant 86.1 1.7 3.7E-05 52.0 7.5 22 22-43 359-380 (529)
478 KOG1015 Transcription regulato 85.9 2.2 4.7E-05 52.3 7.8 121 285-420 1141-1280(1567)
479 COG3598 RepA RecA-family ATPas 85.9 5 0.00011 43.9 9.8 149 16-167 80-242 (402)
480 TIGR00750 lao LAO/AO transport 85.9 1.1 2.4E-05 49.5 5.3 48 16-66 22-73 (300)
481 CHL00176 ftsH cell division pr 85.9 3.6 7.7E-05 50.2 10.0 20 25-44 217-236 (638)
482 PRK05917 DNA polymerase III su 85.8 6 0.00013 43.2 10.7 125 15-167 7-135 (290)
483 PF05876 Terminase_GpA: Phage 85.7 0.72 1.6E-05 55.3 4.0 67 10-80 17-86 (557)
484 PRK00300 gmk guanylate kinase; 85.7 0.64 1.4E-05 47.9 3.2 24 22-45 3-26 (205)
485 cd02034 CooC The accessory pro 85.7 5.5 0.00012 37.3 9.1 95 27-135 2-96 (116)
486 cd01394 radB RadB. The archaea 85.7 0.99 2.2E-05 47.1 4.6 29 21-49 16-44 (218)
487 PF01580 FtsK_SpoIIIE: FtsK/Sp 85.7 1.1 2.5E-05 46.2 5.0 44 22-66 36-79 (205)
488 COG0630 VirB11 Type IV secreto 85.7 0.83 1.8E-05 50.6 4.2 28 17-44 136-163 (312)
489 COG5008 PilU Tfp pilus assembl 85.5 0.56 1.2E-05 49.5 2.5 38 22-63 125-162 (375)
490 cd03228 ABCC_MRP_Like The MRP 85.5 2.6 5.7E-05 42.1 7.4 21 22-42 26-46 (171)
491 PF10443 RNA12: RNA12 protein; 85.5 1.2 2.7E-05 50.6 5.4 53 126-178 149-205 (431)
492 PRK10787 DNA-binding ATP-depen 85.4 2.3 4.9E-05 53.2 8.2 34 10-43 327-368 (784)
493 COG1136 SalX ABC-type antimicr 85.4 0.51 1.1E-05 49.4 2.2 22 21-42 28-49 (226)
494 COG1074 RecB ATP-dependent exo 85.2 1.2 2.6E-05 58.1 6.0 63 21-83 13-75 (1139)
495 KOG1817 Ribonuclease [RNA proc 85.1 2.7 5.9E-05 47.1 7.6 66 812-877 428-503 (533)
496 KOG2228 Origin recognition com 85.0 15 0.00031 40.7 12.9 129 23-169 48-183 (408)
497 PRK08233 hypothetical protein; 84.9 0.71 1.5E-05 46.4 3.0 22 24-45 3-24 (182)
498 PF07728 AAA_5: AAA domain (dy 84.8 0.78 1.7E-05 44.0 3.1 20 26-45 1-20 (139)
499 TIGR01650 PD_CobS cobaltochela 84.8 1.2 2.6E-05 49.4 4.8 33 15-47 55-87 (327)
500 cd00071 GMPK Guanosine monopho 84.7 0.75 1.6E-05 44.4 2.9 18 27-44 2-19 (137)
No 1
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1e-149 Score=1316.53 Aligned_cols=735 Identities=53% Similarity=0.881 Sum_probs=678.7
Q ss_pred ChhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 1 ~~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
|+++|.+||+|+++++|++++.++++++|+|+||||||||+|||||+..+..+ +.|+|+||||||++|+++|+||++|
T Consensus 165 ~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~E 242 (924)
T KOG0920|consen 165 MLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKE 242 (924)
T ss_pred HHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999998765 7899999999999999999999999
Q ss_pred hCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397 81 RGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 81 ~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
+++.+|..|||+||+++..+..++|+|||+|+|||.|+.++.+.+++|||+||+|||++++||++.+++.++.++|++|+
T Consensus 243 R~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 243 RGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred hccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 161 VLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 161 IlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
|+||||+|++.|++||++||+++|+|++|||..+|+||++..++|........ .+ +.. .
T Consensus 323 ILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~-----------~~~--~------ 381 (924)
T KOG0920|consen 323 ILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SG-----------PER--S------ 381 (924)
T ss_pred EEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--cc-----------ccc--C------
Confidence 99999999999999999999999999999999999999999998876543322 00 000 0
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL 320 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v 320 (901)
.+.. ..+..|.++ ++++||+.++.+|+.....|+||||+||+++|..+.+.|..+..+.+..++.|
T Consensus 382 --~~~~-----------~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~i 447 (924)
T KOG0920|consen 382 --QLRL-----------ARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAI 447 (924)
T ss_pred --cccc-----------ccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEE
Confidence 0000 002223333 99999999999999999899999999999999999999998877777788999
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
+++||.|+..||+.||..++.|.+|||+||||||||||||||.||||+|+.|++.||+..+++++...|+|||++.||+|
T Consensus 448 lplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~G 527 (924)
T KOG0920|consen 448 LPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRG 527 (924)
T ss_pred EeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCceEEcCCcchhhhccc-CCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCc
Q 046397 401 RAGRVQPGECYRLYPRCVYDAFAE-YQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGAL 479 (901)
Q Consensus 401 RAGR~~~G~c~~L~s~~~~~~l~~-~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gal 479 (901)
||||+++|.|||||++.+|+.+.+ +++|||+|+||+++||++|.++++++.+||+++++||+..+|..|+..|..+|||
T Consensus 528 RAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL 607 (924)
T KOG0920|consen 528 RAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGAL 607 (924)
T ss_pred cccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccc
Confidence 999999999999999999999777 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcC-CCCCcHHHHH
Q 046397 480 DHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFS-HDYSDHLALV 558 (901)
Q Consensus 480 d~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~-~~~sDhl~~l 558 (901)
+.+++||+||++|+.||+||++|||+++|++|+|+||+++|||+|++++||+.|.++++.+++++..|+ +..|||||++
T Consensus 608 ~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~ 687 (924)
T KOG0920|consen 608 DESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVV 687 (924)
T ss_pred cCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 5679999999
Q ss_pred HHHHHHHHHhhc--ccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCC------CCccccCCCCHHHHHHHHHh
Q 046397 559 RAFEGWKDAERG--LAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCD------TSICNAWGRDERFIRAVICY 630 (901)
Q Consensus 559 ~af~~w~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~------~~~~n~~s~~~~li~a~l~a 630 (901)
+||++|++.... ....+||++||||..+|+++.++|.||.+.|.+.||++.+ .+.+|.++.|+++++++|||
T Consensus 688 ~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a 767 (924)
T KOG0920|consen 688 RAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCA 767 (924)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhc
Confidence 999999999876 5678999999999999999999999999999999998753 45688999999999999999
Q ss_pred ccCCCcccccc---CCCCCccccccCCeEEEccCCccCCcCCCCCCeEEEEEEeeecc-eeEeccCCCChHHHHHhcCcc
Q 046397 631 GLYPGISSIVQ---NGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNS-VFLKDSTAVSDSVLLLFGGSI 706 (901)
Q Consensus 631 glypnva~~~~---~~~~~~~~t~~~~~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~-~~ir~~t~V~p~~llLfgg~~ 706 (901)
|||||++.+.. +.+...+.|..++.|+|||+|+|++...+..+|++|+|+++|++ +|+||+|.|++++++||||.+
T Consensus 768 ~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~ 847 (924)
T KOG0920|consen 768 GLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGI 847 (924)
T ss_pred cCCCceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCc
Confidence 99999999875 45566788888899999999999998888889999999999999 999999999999999999987
Q ss_pred c-cccccCcEEEE--CcEEEEEeChhHHHHHHHHHHHHHHHHHHHHcCCCCCC----CCchHHHHHHHHHHhc
Q 046397 707 S-QGEIDGHLKMM--GGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNI----HTHEDLLAAVRLLVAE 772 (901)
Q Consensus 707 ~-~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~p~~~~----~~~~~~~~~i~~l~~~ 772 (901)
. +...+|+..++ |+|+.|.+++.+|.+++.||..+|.+|++++++|.... ..+......+..++..
T Consensus 848 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 920 (924)
T KOG0920|consen 848 STVRMKSGSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKIRSPCASLPDSSGKGSESPSLIANLLVG 920 (924)
T ss_pred eeecCCCCccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhccCccccccccccccccchhhhhhhhhh
Confidence 7 55566776544 99999999999999999999999999999999999765 1234466666666654
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-135 Score=1138.05 Aligned_cols=618 Identities=39% Similarity=0.660 Sum_probs=570.9
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
.+.|+.|||++++++|+.++.+|+++||.|+||||||||+|||+++..+.. .+.|.||||||++|+++|+||++|+
T Consensus 44 ~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~----~g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 44 QEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS----SGKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred HHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc----CCcEEeecCchHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999987643 3359999999999999999999999
Q ss_pred CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
+..+|+.|||.|||++..+..|+|.|+|+|+|||++..||.|+.|++|||||||||++.+|+|+++||.++++++++|+|
T Consensus 120 ~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklI 199 (674)
T KOG0922|consen 120 GCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLI 199 (674)
T ss_pred CCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 162 LMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 162 lmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
+||||+|++.|++||++||++.|+||+|||+++|+... . .+.++
T Consensus 200 imSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p-------------~-----------------------~dYv~ 243 (674)
T KOG0922|consen 200 IMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP-------------T-----------------------ADYVD 243 (674)
T ss_pred EEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC-------------c-----------------------hhhHH
Confidence 99999999999999999999999999999999998631 1 12233
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCc-cCCCCCceEE
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANR-ILGDPTRVLL 320 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~-~~~~~~~~~v 320 (901)
+++. .+..|+.++++|+||||++|.+||+.+++.|.+.. .........+
T Consensus 244 a~~~------------------------------tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~ 293 (674)
T KOG0922|consen 244 AALI------------------------------TVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELI 293 (674)
T ss_pred HHHH------------------------------HHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCccee
Confidence 3332 34567778999999999999999999999998742 1222222378
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
+|+||.||.++|.+||++.+.|.||||+||||||||||||+|.||||+|++|.+.||+.+++.+|...||||+++.||+|
T Consensus 294 lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaG 373 (674)
T KOG0922|consen 294 LPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAG 373 (674)
T ss_pred eeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCcc
Q 046397 401 RAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALD 480 (901)
Q Consensus 401 RAGR~~~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gald 480 (901)
||||++||+|||||++..|+.|++.++|||+|++|...+|++|++|++|+..| .|+|||+.+++..|++.|..+||||
T Consensus 374 RAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F--~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 374 RAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRF--PFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred cCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccC--CCCCCCChHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCccch-hhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHH-HHHHHhhcCCCCCcHHHHH
Q 046397 481 HNEELTV-LGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDL-AEAAKSQFSHDYSDHLALV 558 (901)
Q Consensus 481 ~~~~lT~-lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~-~~~~~~~f~~~~sDhl~~l 558 (901)
++|.||. +|+.|+.+|++|.++|||+.+..+||++++++|||+||+.++|..|.+++.+ ++..|++|.+..+||++++
T Consensus 452 ~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL 531 (674)
T KOG0922|consen 452 DRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLL 531 (674)
T ss_pred CcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHH
Confidence 9999998 9999999999999999999999999999999999999999999999988777 8999999999999999999
Q ss_pred HHHHHHHHHhhcccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhccCCCccc
Q 046397 559 RAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISS 638 (901)
Q Consensus 559 ~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~aglypnva~ 638 (901)
++|+.|... +...+||++|||+.+.|+.+.++|+||..++...++.. .....|...|+.|||+|||.|+|+
T Consensus 532 ~vy~~~~~~---~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~------~s~~~d~~~i~k~l~aGff~N~A~ 602 (674)
T KOG0922|consen 532 NVYESWKEN---GTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPV------SSCGGDMEKIRKCLCAGFFRNVAE 602 (674)
T ss_pred HHHHHHHhc---CChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCc------cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999884 45689999999999999999999999999998887743 223456788999999999999998
Q ss_pred cccCCCCCccccccCCe-EEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCcc
Q 046397 639 IVQNGKSSSLKTMEDGQ-VFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSI 706 (901)
Q Consensus 639 ~~~~~~~~~~~t~~~~~-v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~ 706 (901)
....+ . |+|..+++ |+|||||+++..+ ++|+||+|++.|+|.|+|+||.|.+.||..++.+.
T Consensus 603 ~~~~~--~-Yrti~~~~~v~IHPSS~l~~~~---p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~ 665 (674)
T KOG0922|consen 603 RDYQD--G-YRTIRGGQPVYIHPSSVLFRRK---PEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHF 665 (674)
T ss_pred hhcCC--C-eEEccCCcEEEEechHHhhcCC---CCEEEEEEEeecchHhHhheeecCHHHHHHhCchH
Confidence 75322 3 99987655 8999999999764 79999999999999999999999999999997765
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-130 Score=1076.64 Aligned_cols=619 Identities=36% Similarity=0.580 Sum_probs=569.4
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
.++|+.||++..|+++++.|..|++|||+|+||||||||++||+++..+ +..+.|.||||||++|+++|+||++|+
T Consensus 349 ~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY----~~~GmIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 349 REQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGY----ADNGMIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred HHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccc----ccCCeeeecCchHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999999999998754 445699999999999999999999999
Q ss_pred CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
+..+|..|||.|||++.+++.|.|.|+|.|+|||....+..|..|++||+||||||++++|+++++++.++.++.++|+|
T Consensus 425 ~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred CCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 162 LMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 162 lmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
++|||+|++.|++|||+||.+.||||+|||++.|.... .+ +.++
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p-------------~e-----------------------DYVe 548 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTP-------------VE-----------------------DYVE 548 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecCCccceEEEeccCc-------------hH-----------------------HHHH
Confidence 99999999999999999999999999999999997542 11 2344
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc---CCCCCce
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI---LGDPTRV 318 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~---~~~~~~~ 318 (901)
.++... ..|+....+|.||||++|.++|+..+..+...-. .+....+
T Consensus 549 aavkq~------------------------------v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L 598 (1042)
T KOG0924|consen 549 AAVKQA------------------------------VQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDL 598 (1042)
T ss_pred HHHhhh------------------------------eEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCce
Confidence 443321 2344456789999999999999988887765311 1222478
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHH
Q 046397 319 LLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQR 398 (901)
Q Consensus 319 ~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 398 (901)
.|+|++|.||..-|.++|++.+.|.||+||||||||||+|||+|.||||+|+.|.+.|++..++..|...+||+|++.||
T Consensus 599 ~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QR 678 (1042)
T KOG0924|consen 599 AVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQR 678 (1042)
T ss_pred EEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceEEcCCcchhh-hcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 046397 399 RGRAGRVQPGECYRLYPRCVYD-AFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIG 477 (901)
Q Consensus 399 ~GRAGR~~~G~c~~L~s~~~~~-~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~g 477 (901)
+|||||++||.|||||++..|. .|.+.++|||+|++|.+++|.+|+|++.++..| .|+|||+.+.+.+|+-.|..+|
T Consensus 679 aGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F--dFmD~Pped~~~~sly~Lw~LG 756 (1042)
T KOG0924|consen 679 AGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--DFMDPPPEDNLLNSLYQLWTLG 756 (1042)
T ss_pred ccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC--CcCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998886 599999999999999999999999999999999 9999999999999999999999
Q ss_pred CccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcCCCCCcHHHH
Q 046397 478 ALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLAL 557 (901)
Q Consensus 478 ald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~~~~sDhl~~ 557 (901)
||+..|.||++|+.|+.+|+||.++||||.++.+||.|+||+|++|||+...|+.|.+..++++.+|.+|....||||++
T Consensus 757 Al~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTl 836 (1042)
T KOG0924|consen 757 ALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTL 836 (1042)
T ss_pred ccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhccCCCcc
Q 046397 558 VRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGIS 637 (901)
Q Consensus 558 l~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~aglypnva 637 (901)
||+|++|+... ....||.+|||+.++|+.+.++|.||+.+|++.++.. +. +.+|++|++|||+|+|-|+|
T Consensus 837 LNVf~qw~~~~---~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l------~S-~~dwdivrKCIcs~~fhn~A 906 (1042)
T KOG0924|consen 837 LNVFNQWRKNK---YSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPL------IS-SDDWDIVRKCICSAYFHNAA 906 (1042)
T ss_pred HHHHHHHHhcC---CchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCc------cc-CchHHHHHHHHHHHHHHHHH
Confidence 99999998775 3578999999999999999999999999999998842 22 27899999999999999999
Q ss_pred ccccCCCCCccccccCC-eEEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCccc
Q 046397 638 SIVQNGKSSSLKTMEDG-QVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSIS 707 (901)
Q Consensus 638 ~~~~~~~~~~~~t~~~~-~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~~ 707 (901)
++.. .+.|.+...+ .++|||+|++++. +.++||||||++.|++.||++||.|+|.||+-.||-..
T Consensus 907 rlkg---~g~YV~~~tg~~c~lHPsS~L~g~--y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y 972 (1042)
T KOG0924|consen 907 RLKG---IGEYVNLSTGIPCHLHPSSVLHGL--YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFY 972 (1042)
T ss_pred Hhcc---CceEEEccCCcceeecchHhhhcC--CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeE
Confidence 8743 2346666555 4899999999976 56789999999999999999999999999999998653
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-129 Score=1066.36 Aligned_cols=620 Identities=36% Similarity=0.592 Sum_probs=565.6
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
.+.|+.||||.++++++.++.++|++||.|+||||||||+|||+.+..+..+. .+|.||||||++|+++|.||++|+
T Consensus 258 ee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~g---k~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 258 EEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGG---KKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCC---ceEeecCcchHHHHHHHHHHHHHh
Confidence 35699999999999999999999999999999999999999999998775432 249999999999999999999999
Q ss_pred CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
|.++|..|||+|||+++++.+|.|.|+|+|||+|.++.+|.|..|++|||||||||++.+|+|.++++++.+.+|++|++
T Consensus 335 gvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred CcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 162 LMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 162 lmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
++|||+|++.|+.||+++|++.+|||.|||+++|-... -++.++
T Consensus 415 IsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P------------------------------------EAdYld 458 (902)
T KOG0923|consen 415 ISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP------------------------------------EADYLD 458 (902)
T ss_pred eeccccCHHHHHHhccCCcEEeccCcccceeeecccCC------------------------------------chhHHH
Confidence 99999999999999999999999999999999996431 012233
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCc--cCCCCCceE
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANR--ILGDPTRVL 319 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~--~~~~~~~~~ 319 (901)
.++. .+..|+.+.+.|+||||++|.++|+.+.+.|.+.. +-.....+.
T Consensus 459 Aai~------------------------------tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eli 508 (902)
T KOG0923|consen 459 AAIV------------------------------TVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELI 508 (902)
T ss_pred HHHh------------------------------hheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEE
Confidence 3332 13455666788999999999999999998887632 222234678
Q ss_pred EEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHh
Q 046397 320 LLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRR 399 (901)
Q Consensus 320 v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 399 (901)
|+|+|++||.+.|.+||++.|+|.||||+||||||||||||+|.||||.|++|++.|++.++|.+|.+.|||||++.||+
T Consensus 509 v~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRa 588 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRA 588 (902)
T ss_pred EeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEcCCcchhhh-cccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCC
Q 046397 400 GRAGRVQPGECYRLYPRCVYDA-FAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGA 478 (901)
Q Consensus 400 GRAGR~~~G~c~~L~s~~~~~~-l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~ga 478 (901)
|||||++||+|||||+...|+. +.+.+.|||+|++|.+++|.+|+||+.|+..| +|+|||+.+++..||+.|+.+||
T Consensus 589 GRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~F--dFmDpPp~etL~~aLE~LyaLGA 666 (902)
T KOG0923|consen 589 GRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHF--DFLDPPPTETLLKALEQLYALGA 666 (902)
T ss_pred cccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccc--ccCCCCChHHHHHHHHHHHHhhc
Confidence 9999999999999999999985 88889999999999999999999999999999 99999999999999999999999
Q ss_pred ccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCC-CCccCCCChHHHHHHHHhhcCCCCCcHHHH
Q 046397 479 LDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVR-DPFLAPMDKKDLAEAAKSQFSHDYSDHLAL 557 (901)
Q Consensus 479 ld~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~-~~f~~p~~~~~~~~~~~~~f~~~~sDhl~~ 557 (901)
|+..|+||.+|+.|+++|+||.++|||+.+..++|.+++++||||||+. ++|+.|.++.-.++.+++.|....|||+++
T Consensus 667 Ln~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~ 746 (902)
T KOG0923|consen 667 LNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVL 746 (902)
T ss_pred cccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhh
Confidence 9999999999999999999999999999999999999999999999986 799999998888999999999899999999
Q ss_pred HHHHHHHHHHhhcccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhccCCCcc
Q 046397 558 VRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGIS 637 (901)
Q Consensus 558 l~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~aglypnva 637 (901)
+++|+.|.... ...+||.+||+++.+|..+.++|.||..+|...+.-..+ +..+...||.++.+|||||+|
T Consensus 747 L~vyn~w~es~---~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s------~~~~~~~irk~i~aGff~h~a 817 (902)
T KOG0923|consen 747 LNVYNQWKESK---YSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSS------NQNDLDKIRKAITAGFFYHTA 817 (902)
T ss_pred hHHHHHHhhcc---hhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccC------ChHHHHHHHHHHhccccccce
Confidence 99999998875 457999999999999999999999999999987653211 112456799999999999999
Q ss_pred ccccCCCCCccccccCCe-EEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCccc
Q 046397 638 SIVQNGKSSSLKTMEDGQ-VFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSIS 707 (901)
Q Consensus 638 ~~~~~~~~~~~~t~~~~~-v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~~ 707 (901)
++.. ...|+|....+ |++||.|+++.. . |.||||+|+|.|++.|+|.++.+.+.||+-.+.+..
T Consensus 818 ~l~~---~g~y~tvk~~~tv~~hp~S~l~~~--~-P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyy 882 (902)
T KOG0923|consen 818 KLSK---GGHYRTVKHPQTVSIHPNSGLFEQ--L-PRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYY 882 (902)
T ss_pred eccC---CCcceeeccCcceeecCccccccc--C-CceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhh
Confidence 8743 45688887665 899999999864 2 389999999999999999999999999998887654
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-122 Score=985.95 Aligned_cols=617 Identities=36% Similarity=0.608 Sum_probs=562.6
Q ss_pred ChhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 1 ~~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
+++.|..||+|++++++++.+.+||.++++|+||||||||+|||+++...... ..|.||||||.+|+|+|.||++|
T Consensus 39 ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQprrvaamsva~RVadE 114 (699)
T KOG0925|consen 39 ILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPRRVAAMSVAQRVADE 114 (699)
T ss_pred HHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCchHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999886544 46999999999999999999999
Q ss_pred hCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397 81 RGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 81 ~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
+...+|+.|||.|++|++.+++|-+.|||+|+|+|..++++.+..+++||+||+|||++.+|.|++++++++..+|++|+
T Consensus 115 MDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~ 194 (699)
T KOG0925|consen 115 MDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKL 194 (699)
T ss_pred hccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 161 VLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 161 IlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
|+||||+++.+|..||+++|++.||| +|||+++|..++- .+.+
T Consensus 195 vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~e------------------------------------rDyl 237 (699)
T KOG0925|consen 195 VVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPE------------------------------------RDYL 237 (699)
T ss_pred EEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCC------------------------------------hhHH
Confidence 99999999999999999999999999 9999999976420 1234
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhC--ccCCCCCce
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQAN--RILGDPTRV 318 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~--~~~~~~~~~ 318 (901)
+.+++ .+..|+..+.+|+||||++|.++|+.+++.+... .+..+....
T Consensus 238 Eaair------------------------------tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l 287 (699)
T KOG0925|consen 238 EAAIR------------------------------TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPL 287 (699)
T ss_pred HHHHH------------------------------HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCc
Confidence 44443 3556777788999999999999999999998742 122334567
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCC-----CeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHh
Q 046397 319 LLLTCHGSMASSEQRLIFDEPESG-----VRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTV 393 (901)
Q Consensus 319 ~v~~lhs~l~~~eq~~i~~~f~~g-----~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 393 (901)
.|+|+| +.+|..+|++.+.. .|||+|+||+||++++|++|+||||.|+.|++.|+|.-...+++..+|||+
T Consensus 288 ~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISka 363 (699)
T KOG0925|consen 288 KVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKA 363 (699)
T ss_pred eEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHh
Confidence 899999 77889999988743 589999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhhcCCCCCCceEEcCCcchhhh-cccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHH
Q 046397 394 SAQQRRGRAGRVQPGECYRLYPRCVYDA-FAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEY 472 (901)
Q Consensus 394 ~~~QR~GRAGR~~~G~c~~L~s~~~~~~-l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~ 472 (901)
++.||+|||||++||+||+||++..|+. |.+.+.|||+|.+|.+++|++|.+|++++..| +++|||.++++.+|++.
T Consensus 364 sA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf--dfmDpPAPEtLMrALE~ 441 (699)
T KOG0925|consen 364 SAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF--DFMDPPAPETLMRALEV 441 (699)
T ss_pred HHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC--cCCCCCChHHHHHHHHH
Confidence 9999999999999999999999999974 99999999999999999999999999999999 99999999999999999
Q ss_pred HHHcCCccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCC-ChHHHHHHHHhhcCCCC
Q 046397 473 LKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPM-DKKDLAEAAKSQFSHDY 551 (901)
Q Consensus 473 L~~~gald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~-~~~~~~~~~~~~f~~~~ 551 (901)
|..++|||++|+||++|..|+.+|+||.++||||.++.|+|.+++|+|+||||+.+.|+.|. +.++.|+.+|+.|++..
T Consensus 442 LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~d 521 (699)
T KOG0925|consen 442 LNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHID 521 (699)
T ss_pred hhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 77889999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhc
Q 046397 552 SDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYG 631 (901)
Q Consensus 552 sDhl~~l~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~ag 631 (901)
|||++++|+|.+|++.. ...+||++||||+++|+.+..+|.||.+++.+.++.-.... ++. .++..-||++|++|
T Consensus 522 GDHlTLlnVYhAfkq~~---~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~-F~S-~~y~~nirKALvsg 596 (699)
T KOG0925|consen 522 GDHLTLLNVYHAFKQNN---EDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTD-FGS-RDYYVNIRKALVSG 596 (699)
T ss_pred cchHHHHHHHHHHHhcC---CChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCC-CCC-hhHHHHHHHHHHHH
Confidence 99999999999998764 45689999999999999999999999999999988644322 221 12344588999999
Q ss_pred cCCCccccccCCCCCccccccCCe-EEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCcc
Q 046397 632 LYPGISSIVQNGKSSSLKTMEDGQ-VFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSI 706 (901)
Q Consensus 632 lypnva~~~~~~~~~~~~t~~~~~-v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~ 706 (901)
+|.+||+... ...|.|..+++ |.+||++++.+ +++|++|||.+.|+++|||.||.|.|.||+-.+...
T Consensus 597 yFmqVA~~~~---~~~Ylt~kdnqvvqLhps~~l~~----~PeWVlyneFvlt~~N~ir~vt~I~pewlv~laP~Y 665 (699)
T KOG0925|consen 597 YFMQVAHLER---GGHYLTVKDNQVVQLHPSTCLDH----KPEWVLYNEFVLTTKNFIRTVTDIRPEWLVELAPQY 665 (699)
T ss_pred HHHHHHhhcc---CCceEEEecCceEEeccccccCC----CCCeEEEeeEEeeccceeeeecccCHHHHHHhchhh
Confidence 9999997643 33789999988 58999999873 579999999999999999999999999999877653
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.6e-116 Score=1069.26 Aligned_cols=623 Identities=32% Similarity=0.516 Sum_probs=559.0
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
+.+|.+|||++++++|++++.+|++++|+|+||||||||+|+++++. +.+..+.|+||||||++|.++|+||++|+
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~----g~g~~g~I~~TQPRRlAArsLA~RVA~El 142 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL----GRGVKGLIGHTQPRRLAARTVANRIAEEL 142 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc----CCCCCCceeeCCCcHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999874 34555789999999999999999999999
Q ss_pred CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
++.+|..|||++++++..+.+++|+|||||+|++.+..++.|+++++|||||||||++++||++++++.++..+|++|+|
T Consensus 143 ~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvI 222 (1294)
T PRK11131 143 ETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVI 222 (1294)
T ss_pred hhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEE
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 162 LMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 162 lmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
+||||++.+.|++||+++|++.++|++|||+.+|.+.... ++. ...+.+.
T Consensus 223 LmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~------------~~~------------------~~~d~l~ 272 (1294)
T PRK11131 223 ITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEE------------ADD------------------TERDQLQ 272 (1294)
T ss_pred EeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccc------------cch------------------hhHHHHH
Confidence 9999999999999999999999999999999998643100 000 0000111
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEE
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLL 321 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~ 321 (901)
.. ...+..++ ....|+|||||||..+|+.+++.|...+. ....|+
T Consensus 273 ~l------------------------------l~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~----~~~~Vl 317 (1294)
T PRK11131 273 AI------------------------------FDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNL----RHTEIL 317 (1294)
T ss_pred HH------------------------------HHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCC----CcceEe
Confidence 11 11122232 34579999999999999999999987643 235688
Q ss_pred EecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhh
Q 046397 322 TCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGR 401 (901)
Q Consensus 322 ~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GR 401 (901)
++||+|+.++|.++|+. .|.++|||||||||+|||||+|+||||+|++|.+.||+.+++..+...|||+++|.||+||
T Consensus 318 pLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGR 395 (1294)
T PRK11131 318 PLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGR 395 (1294)
T ss_pred ecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccc
Confidence 99999999999999986 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCccC
Q 046397 402 AGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDH 481 (901)
Q Consensus 402 AGR~~~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gald~ 481 (901)
|||.++|.||+||+++.|+.+++++.|||+|++|.++||++|++|++++..| .|++||+..+|..|++.|..+||||.
T Consensus 396 AGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F--~fldpP~~~~i~~al~~L~~LgAld~ 473 (1294)
T PRK11131 396 CGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITT 473 (1294)
T ss_pred cCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999 79999999999999999999999986
Q ss_pred C-----CccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcCCCCCcHHH
Q 046397 482 N-----EELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLA 556 (901)
Q Consensus 482 ~-----~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~~~~sDhl~ 556 (901)
+ ++||++|+.|++||+||++||||+.|+.|+|++++++|||+||+++||..|.++++.++.+++.|++..|||++
T Consensus 474 ~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt 553 (1294)
T PRK11131 474 DEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFADKESDFLA 553 (1294)
T ss_pred cccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHH
Confidence 4 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---cccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhccC
Q 046397 557 LVRAFEGWKDAER---GLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLY 633 (901)
Q Consensus 557 ~l~af~~w~~~~~---~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~agly 633 (901)
++|+|+.|.+... .+..++||++||||+.+|+++.++|.||.+++++.|+.. |....++..|+.|||+|||
T Consensus 554 ~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~------~~~~~~~~~i~~all~G~~ 627 (1294)
T PRK11131 554 FVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPV------NSEPAEYREIHTALLTGLL 627 (1294)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCC------CCCcccHHHHHHHHHhhcH
Confidence 9999999986543 222468999999999999999999999999999999853 2334578899999999999
Q ss_pred CCccccccCCCCCccccccCCeEEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCcccc
Q 046397 634 PGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQ 708 (901)
Q Consensus 634 pnva~~~~~~~~~~~~t~~~~~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~~~ 708 (901)
+|||+.... ...|.+..+..|+|||+|++++. +++||||+|++.|++.|+|+||.|+|.||.-+++++..
T Consensus 628 ~nva~~~~~--~~~y~~~~~~~~~ihP~S~L~~~---~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~ 697 (1294)
T PRK11131 628 SHIGMKDAE--KQEYTGARNARFSIFPGSGLFKK---PPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLIK 697 (1294)
T ss_pred HHHeeccCC--CCeEEccCCcEEEEcCCccccCC---CCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhcc
Confidence 999976432 23477777788999999999863 56899999999999999999999999999999988754
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-111 Score=1036.18 Aligned_cols=621 Identities=34% Similarity=0.546 Sum_probs=557.1
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
+.++.+|||++++++|++++.+|+++||+|+||||||||+|+++++. +.+..++|+||||||++|.++|+||++++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~----~~~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL----GRGSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc----CCCCCceEecCCccHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999874 34556799999999999999999999999
Q ss_pred CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
|+.+|..|||++++++..+.+|+|+|||+|+|++++..++.|.++++|||||+|||++++|++++++++++..++++|+|
T Consensus 136 g~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlI 215 (1283)
T TIGR01967 136 GTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKII 215 (1283)
T ss_pred CCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 162 LMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 162 lmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
+||||++.+.|++||+++|++.++|+.|||+.+|..... ...++ . ...+
T Consensus 216 lmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~----------~~~~~-----------------~---~~~~- 264 (1283)
T TIGR01967 216 ITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVE----------EQEDD-----------------D---LDQL- 264 (1283)
T ss_pred EEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccc----------cccch-----------------h---hhHH-
Confidence 999999999999999999999999999999998864210 00000 0 0000
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEE
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLL 321 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~ 321 (901)
+.+...+..++. ...|+||||+||..+|+.+++.|..... ..+.|+
T Consensus 265 -----------------------------~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~----~~~~Vl 310 (1283)
T TIGR01967 265 -----------------------------EAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNL----RHTEIL 310 (1283)
T ss_pred -----------------------------HHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCC----CCcEEE
Confidence 011112333333 2569999999999999999999987532 246789
Q ss_pred EecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhh
Q 046397 322 TCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGR 401 (901)
Q Consensus 322 ~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GR 401 (901)
++||+|+.++|.++|+.+ +.++|||||||||+|||||+|+||||+|++|.+.||+.++++.+.+.|||+++|.||+||
T Consensus 311 pLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGR 388 (1283)
T TIGR01967 311 PLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGR 388 (1283)
T ss_pred eccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhh
Confidence 999999999999999875 358999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCccC
Q 046397 402 AGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDH 481 (901)
Q Consensus 402 AGR~~~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gald~ 481 (901)
|||.++|.||+||+++.|+.+++++.|||+|++|.++||+++++|++++.+| .|++||+..++..|++.|..+||||.
T Consensus 389 AGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~ 466 (1283)
T TIGR01967 389 CGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDD 466 (1283)
T ss_pred hCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred CC---ccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcCCCCCcHHHHH
Q 046397 482 NE---ELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALV 558 (901)
Q Consensus 482 ~~---~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~~~~sDhl~~l 558 (901)
+| +||++|+.|+.||+||++||||+.|+.++|++++++|||+||+++||..|.++++.++.+++.|.+..|||++++
T Consensus 467 ~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L 546 (1283)
T TIGR01967 467 DEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRV 546 (1283)
T ss_pred CCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHH
Confidence 98 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---ccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhccCCC
Q 046397 559 RAFEGWKDAERG---LAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPG 635 (901)
Q Consensus 559 ~af~~w~~~~~~---~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~aglypn 635 (901)
|+|+.|.+.... +..++||++||||+.+|+++.++++||.+++++.|+.. |.+..+...++.+|++|||+|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~------~~~~~~~~~i~~~l~~g~~~~ 620 (1283)
T TIGR01967 547 NLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKL------NEEPADYDAIHKALLSGLLSQ 620 (1283)
T ss_pred HHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCc------CCCCccHHHHHHHHHHhhHHH
Confidence 999999865322 23468999999999999999999999999999988743 222345666899999999999
Q ss_pred ccccccCCCCCccccccCCeEEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCccc
Q 046397 636 ISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSIS 707 (901)
Q Consensus 636 va~~~~~~~~~~~~t~~~~~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~~ 707 (901)
||+... ...|.+..+..+.|||+|++++. +++||||+|++.|++.|||++|.|+|.||..+++++.
T Consensus 621 iA~~~~---~~~y~~~~g~~~~ihP~S~L~~~---~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~ 686 (1283)
T TIGR01967 621 IGMKDE---KHEYDGARGRKFHIFPGSPLFKK---PPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLI 686 (1283)
T ss_pred HheeCC---CCcEEecCCcEEEECCCccccCC---CCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHh
Confidence 997542 24688888888999999999863 4689999999999999999999999999999988764
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.7e-110 Score=985.86 Aligned_cols=625 Identities=40% Similarity=0.590 Sum_probs=546.1
Q ss_pred ChhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 1 ~~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
++++|..||+++.+++|++++.+++++||+||||||||||+|+++++..+ +...+|+||||||++|.++|+|+++|
T Consensus 42 ~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 42 ILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred hhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999765 44568999999999999999999999
Q ss_pred hCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-Cce
Q 046397 81 RGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELR 159 (901)
Q Consensus 81 ~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~k 159 (901)
+|+++|+.|||++||++..+++|+|.|+|+|+|+++++.|+.|+.|++|||||+|||++++|++++++++++..++ ++|
T Consensus 118 l~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 118 LGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred hCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888776 799
Q ss_pred EEEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHH
Q 046397 160 LVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASA 239 (901)
Q Consensus 160 iIlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (901)
+|+||||+|++.|++||+++|++.++||+|||+++|.+... .++ .
T Consensus 198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~-------------~d~----------------------~ 242 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE-------------ADY----------------------I 242 (845)
T ss_pred EEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCC-------------cch----------------------h
Confidence 99999999999999999999999999999999999976521 000 0
Q ss_pred HHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceE
Q 046397 240 VEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVL 319 (901)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~ 319 (901)
+++++.. ...++.....|+||||+||..+|+.+++.|.+... ...+.
T Consensus 243 l~~ai~~------------------------------~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l---~~~~~ 289 (845)
T COG1643 243 LLDAIVA------------------------------AVDIHLREGSGSILVFLPGQREIERTAEWLEKAEL---GDDLE 289 (845)
T ss_pred HHHHHHH------------------------------HHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccc---cCCcE
Confidence 2222211 12333446689999999999999999999998221 14678
Q ss_pred EEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHh
Q 046397 320 LLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRR 399 (901)
Q Consensus 320 v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 399 (901)
|+|+||.|+.++|.++|++.+.|+||||+||||||||||||+|+||||+|+.|++.||+.+++..|.++|||||++.||+
T Consensus 290 i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRa 369 (845)
T COG1643 290 ILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRA 369 (845)
T ss_pred EeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCC-CHHHHhhhhcCCChHHHHHHHHHHHHHcCC
Q 046397 400 GRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLG-TIAGFLSRALQSPELLAVQNAIEYLKIIGA 478 (901)
Q Consensus 400 GRAGR~~~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~-~~~~fl~~~l~pP~~~~v~~al~~L~~~ga 478 (901)
|||||++||+|||||+++.|..|++++.|||+|++|++++|+++++|++ ++..| .|+|||+..++..|++.|..+||
T Consensus 370 GRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~fld~P~~~~i~~A~~~L~~LGA 447 (845)
T COG1643 370 GRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAIQAALTLLQELGA 447 (845)
T ss_pred cccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccC--ccCCCCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999996 99999 99999999999999999999999
Q ss_pred ccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCC---CccCCCChHH---HHHHHH-hhcCC--
Q 046397 479 LDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRD---PFLAPMDKKD---LAEAAK-SQFSH-- 549 (901)
Q Consensus 479 ld~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~---~f~~p~~~~~---~~~~~~-~~f~~-- 549 (901)
||.+|.||++|+.|+.||+||++++||+.+..++|++++++|||+||+++ .|..+.+.+. ....++ ..+.+
T Consensus 448 ld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~ 527 (845)
T COG1643 448 LDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAA 527 (845)
T ss_pred cCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999998 6888776555 333333 33444
Q ss_pred -CCCcHHHHHHHHHHHHHHhhcc---cchHHHHhhcCCCcchhhHHHHHHHHHHHHHh-CCCCCCCCCc-----------
Q 046397 550 -DYSDHLALVRAFEGWKDAERGL---AGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKD-TGLVDCDTSI----------- 613 (901)
Q Consensus 550 -~~sDhl~~l~af~~w~~~~~~~---~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~-~~~~~~~~~~----------- 613 (901)
..+||++++++|..|....... ...+||+.++++.++|..+..++.+++..... .|.+......
T Consensus 528 ~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (845)
T COG1643 528 DPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLP 607 (845)
T ss_pred CcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhh
Confidence 7899999999999998876321 35689999999999999999999999888876 5543211100
Q ss_pred --cccCCCCHHHHHHHHHhccCCCccccccCCCCCccccccC-CeEEEccCCccCCcCCCCCCeEEEEEEeeecceeEe-
Q 046397 614 --CNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMED-GQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLK- 689 (901)
Q Consensus 614 --~n~~s~~~~li~a~l~aglypnva~~~~~~~~~~~~t~~~-~~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir- 689 (901)
+-.+. .|+.++.++++|++.|++.+.... ..|.+..+ ..|++||+|+ .......+|++|++.+++++.|++
T Consensus 608 ~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (845)
T COG1643 608 EHCYSEP-IWDDIRGALAAGRKLNIAQLQLDG--RPYVTLSDNTPVFAHPSSV--RLGLVLLEWIKYAEFLRTRKGYLRE 682 (845)
T ss_pred hhhccch-hHHHHhhhhhhheecceeeeeccc--cccccCCCCceeEecchhH--hhcccCcchHHHHHHHHHHHHHHhh
Confidence 00111 468899999999999999875432 23666665 5699999997 222345789999999999999999
Q ss_pred ----------ccCCCChHHHHHhcC
Q 046397 690 ----------DSTAVSDSVLLLFGG 704 (901)
Q Consensus 690 ----------~~t~V~p~~llLfgg 704 (901)
.++.+.+.||.-+..
T Consensus 683 ~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 683 GRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred cccccCcccchHhhhHHHhhhhhcc
Confidence 377777777765443
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-106 Score=901.97 Aligned_cols=628 Identities=36% Similarity=0.579 Sum_probs=542.7
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-CeeEEEEecchHHHHHHHHHHHHHH
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG-AVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~~~~IlvtqPrr~la~qva~rva~e 80 (901)
++.|..|||....++|+++|..|.+|||||+||||||||+|||+++..+..... ....|.+|||||.+|+.+|+||+.|
T Consensus 249 Q~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~E 328 (1172)
T KOG0926|consen 249 QESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFE 328 (1172)
T ss_pred HHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999987754322 2458999999999999999999999
Q ss_pred hCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-----
Q 046397 81 RGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR----- 155 (901)
Q Consensus 81 ~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~----- 155 (901)
+|. +|..|||+||+++..++.|.|.|||+|+||+.+.+|..|..|++|||||||||++++|+|.++|.++++.|
T Consensus 329 L~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 329 LGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred hcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 998 99999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred -----CCceEEEeccCCCHHHHH---hhhC-CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhc
Q 046397 156 -----PELRLVLMSATLDAELFS---SYFG-GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSK 226 (901)
Q Consensus 156 -----~~~kiIlmSATl~~~~f~---~yf~-~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (901)
..+|+|+||||+-.++|. ..|. .+|++.++.|+|||.+||-.. + .++
T Consensus 408 e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~kr---------T----~~D----------- 463 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKR---------T----PDD----------- 463 (1172)
T ss_pred hhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccC---------C----Cch-----------
Confidence 268999999999888887 3565 578999999999999999542 1 112
Q ss_pred ccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHH
Q 046397 227 QAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKL 306 (901)
Q Consensus 227 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 306 (901)
++.++.++ .+.|++..++|.||||++|..++..+++.|
T Consensus 464 ------------Yi~eAfrK------------------------------tc~IH~kLP~G~ILVFvTGQqEV~qL~~kL 501 (1172)
T KOG0926|consen 464 ------------YIAEAFRK------------------------------TCKIHKKLPPGGILVFVTGQQEVDQLCEKL 501 (1172)
T ss_pred ------------HHHHHHHH------------------------------HHHHhhcCCCCcEEEEEeChHHHHHHHHHH
Confidence 23334332 467888899999999999999999999998
Q ss_pred HhCcc---------------------------------------------------------------------------
Q 046397 307 QANRI--------------------------------------------------------------------------- 311 (901)
Q Consensus 307 ~~~~~--------------------------------------------------------------------------- 311 (901)
.....
T Consensus 502 RK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge 581 (1172)
T KOG0926|consen 502 RKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGE 581 (1172)
T ss_pred HhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCC
Confidence 75300
Q ss_pred -----------------CCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccc
Q 046397 312 -----------------LGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKET 374 (901)
Q Consensus 312 -----------------~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~ 374 (901)
...+..+.|+||+|-|+.++|.+||+..+.|.|-+|||||+||||+|||+|.||||||+.|++
T Consensus 582 ~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R 661 (1172)
T KOG0926|consen 582 PEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKER 661 (1172)
T ss_pred cccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhh
Confidence 001124679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh-hcccCCCCcccccCccchhhhhhccCCCCHHHH
Q 046397 375 SYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD-AFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGF 453 (901)
Q Consensus 375 ~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~-~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~f 453 (901)
.||..+++++|.+.|||||++.||+|||||++||+|||||+...|+ .|+++..|||++.|.++++||+|+|++..+..|
T Consensus 662 ~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnF 741 (1172)
T KOG0926|consen 662 LYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNF 741 (1172)
T ss_pred ccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecC
Confidence 9999999999999999999999999999999999999999999998 599999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHcCCccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCC
Q 046397 454 LSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAP 533 (901)
Q Consensus 454 l~~~l~pP~~~~v~~al~~L~~~gald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p 533 (901)
.|++||+..+++.|...|..+||||.+|.||+||+.||.+|+.|++||||+.+-..+|+.-++.++++||+.+||+.-
T Consensus 742 --PFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~ 819 (1172)
T KOG0926|consen 742 --PFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIVA 819 (1172)
T ss_pred --CCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988641
Q ss_pred C-------------ChH-------------------HHHHHHHhhcCCCCCcHHHHHHHHHHHHHHhhcccchHHHHhhc
Q 046397 534 M-------------DKK-------------------DLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNF 581 (901)
Q Consensus 534 ~-------------~~~-------------------~~~~~~~~~f~~~~sDhl~~l~af~~w~~~~~~~~~~~~c~~~~ 581 (901)
. +++ .....++.+|+...||-|.++.|...+..+.. ...||..||
T Consensus 820 ~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ey~~~---~~rfc~~ng 896 (1172)
T KOG0926|consen 820 ASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAAEYAEN---GMRFCEANG 896 (1172)
T ss_pred hhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhhh---cchhHHhcc
Confidence 0 111 11234566787777999999999988877653 345999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHhCCCCCC----CCCccccCCCCHHHHHHHHHhccCCCccccccCCCCCccc-cccCCeE
Q 046397 582 LSAPSMKVIDSLRKEFLSLLKDTGLVDC----DTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLK-TMEDGQV 656 (901)
Q Consensus 582 l~~~~l~~~~~~r~ql~~~l~~~~~~~~----~~~~~n~~s~~~~li~a~l~aglypnva~~~~~~~~~~~~-t~~~~~v 656 (901)
|..++|.++.++|+||..++.....-+. +....-+......+++.+|||||-.+||+..... .|. +.-.+.|
T Consensus 897 Lr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~---~y~~~~i~~~~ 973 (1172)
T KOG0926|consen 897 LRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDAT---EYDAAKIQEPV 973 (1172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhcccc---ccchhhhcCce
Confidence 9999999999999999999884322110 0111111123457899999999999999743221 233 2346789
Q ss_pred EEccCCccCCcCCCCCCeEEEEEEeeecceeEec-cCCCChHHHHHhcCccc
Q 046397 657 FLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKD-STAVSDSVLLLFGGSIS 707 (901)
Q Consensus 657 ~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~-~t~V~p~~llLfgg~~~ 707 (901)
||||+||++.. .++|++|.|++.|+..||.+ +|.|.|.||+...+.+.
T Consensus 974 fl~~~svl~~~---ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slc 1022 (1172)
T KOG0926|consen 974 FLHRWSVLINS---APELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLC 1022 (1172)
T ss_pred eeeehhhhhcc---CccceehhhhhhcCCcccccceEEEchHHHHhhhhhhc
Confidence 99999999864 47999999999998877755 99999999999877553
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.2e-99 Score=854.93 Aligned_cols=786 Identities=36% Similarity=0.608 Sum_probs=673.2
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
+++|.+||+..++++|++++..|++++|-++||||||||+.|+|||..++++.+....++++||||+.|+++++||+.++
T Consensus 371 ~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er 450 (1282)
T KOG0921|consen 371 TAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANER 450 (1282)
T ss_pred hhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCccCcEeeEEEecccccCC-CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397 82 GEKLGESVGYKVRLEGMKGR-DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~-~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
++.+|+.|||++|+++..+. ...|.|||.|.+++++.+ .+..++|+|+||+|||+.++||++.+++.+...++++++
T Consensus 451 ~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 451 GEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred HHhhcccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccchhhhh
Confidence 99999999999999998875 468999999999998864 477899999999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 161 VLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 161 IlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
++||||+|.+.|..||+.+|.+.+.|++|||..+|++|++.++.+.+........+..+. ..+.+...+..
T Consensus 529 ~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~----~~~~~~ddK~~----- 599 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDD----EEDEEVDDKGR----- 599 (1282)
T ss_pred hhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhccc----ccCchhhhccc-----
Confidence 999999999999999999999999999999999999999888766554433322221000 00000000000
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL 320 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v 320 (901)
......-..+...+...+.......+.+.+++.++.++....-+|.|+||+|+|+.|..|...+..+..+++...+.+
T Consensus 600 --n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~i 677 (1282)
T KOG0921|consen 600 --NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEI 677 (1282)
T ss_pred --ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccc
Confidence 001111223334444445555566788999999999999988999999999999999999999999988988889999
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
+++|+.++..+|.+||+..+.|+.|||++||++|++|||.|+++|||+++.+++.|-...++..+.+.|.|+-+..||.|
T Consensus 678 lp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~g 757 (1282)
T KOG0921|consen 678 LPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKG 757 (1282)
T ss_pred ccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCcc
Q 046397 401 RAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALD 480 (901)
Q Consensus 401 RAGR~~~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gald 480 (901)
|+||+++|.||+|.++.+|+.+.++..|||.|+||+++.|.+|.+.+++|..|+..+++||+.++|..+-..|..++++|
T Consensus 758 r~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld 837 (1282)
T KOG0921|consen 758 RAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALD 837 (1282)
T ss_pred cCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcC-CCCCcHHHHHH
Q 046397 481 HNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFS-HDYSDHLALVR 559 (901)
Q Consensus 481 ~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~-~~~sDhl~~l~ 559 (901)
.++.+|++|+.++++|++|.+|||++.+..++|.+-++.+|+.+++..||..-.-........++.|+ +..|||.+...
T Consensus 838 ~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~ 917 (1282)
T KOG0921|consen 838 ANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVS 917 (1282)
T ss_pred ccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhh
Confidence 99999999999999999999999999999999999999999999999888743221112223344555 55677766666
Q ss_pred HHHHHHHHhhcc--cchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCC--c--cccCCCCHHHHHHHHHhccC
Q 046397 560 AFEGWKDAERGL--AGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTS--I--CNAWGRDERFIRAVICYGLY 633 (901)
Q Consensus 560 af~~w~~~~~~~--~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~--~--~n~~s~~~~li~a~l~agly 633 (901)
+-+.|..+...+ .+++||.++.++..+|.+...+|+|+..+|+.++|...... . .|....+..++++.||+++|
T Consensus 918 v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~ly 997 (1282)
T KOG0921|consen 918 VIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALY 997 (1282)
T ss_pred hhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcC
Confidence 655555544322 36799999999999999999999999999999888654211 1 23233445788999999999
Q ss_pred CCccccccCCCCCccccccCCeEEEccCCccC----CcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCccccc
Q 046397 634 PGISSIVQNGKSSSLKTMEDGQVFLYSNSVNA----RESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQG 709 (901)
Q Consensus 634 pnva~~~~~~~~~~~~t~~~~~v~ihpsSv~~----~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~~~~ 709 (901)
||+|... ++.. ..|.+++...||.+|+|. ...++|+||+||.|+++|..+..+..|.|+|+.|||||.+...
T Consensus 998 pn~~~y~--ekrk-vLtTe~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrKVq- 1073 (1282)
T KOG0921|consen 998 PNVAYYV--EKRK-VLTTEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRKVQ- 1073 (1282)
T ss_pred Cccceec--ccee-EEeecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhhcc-
Confidence 9999653 3333 345567778888888765 3456899999999999999999999999999999999998654
Q ss_pred cccCc-EEEECcEEEEEeChhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---chHHHHHHHHHHhccCCCCccccccc-
Q 046397 710 EIDGH-LKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHT---HEDLLAAVRLLVAEDQCEGRFIFGHQ- 784 (901)
Q Consensus 710 ~~~~~-~~~~d~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~p~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~- 784 (901)
.+|. +..+|+||+|.++++.|..+..||..+++|+.+..++|....+. +++++++|++|.....+.-..+.|..
T Consensus 1074 -sdgq~IV~VDdWIklqIshEaAAcItgLr~AmEaLvvev~knPaiIsqLdpvnarllnmiRdIs~pSAa~inLmig~~l 1152 (1282)
T KOG0921|consen 1074 -SDGQGIVRVDDWIKLQISHEAAACITGLRPAMEALVVEVCKNPAIISQLDPVNARLLNMIRDISRPSAADINLMIGDSL 1152 (1282)
T ss_pred -ccCcceEEeeceeeEeccHHHHHHHhhhHHHHHHHHHHHhcChhHhhccCchhHHHHHHHHHhcccccccccceeccCc
Confidence 4566 77899999999999999999999999999999999999876543 46799999999999988877888722
Q ss_pred -------ccCCCCCCccCCCCC-----cccCCC
Q 046397 785 -------VFKPSKPSVVGAQPA-----FISRTE 805 (901)
Q Consensus 785 -------~~~~~~~~~~~~~~~-----~~~~~~ 805 (901)
.++|++++|..++++ +++|.|
T Consensus 1153 ~~~StrygDGp~PPKmaryDnG~~~n~SgyRRG 1185 (1282)
T KOG0921|consen 1153 LTDSTRYGDGPGPPKMARYDNGPSNNNSGYRRG 1185 (1282)
T ss_pred ccccccccCCCCCcccccccCCCccCccccccC
Confidence 278889999988887 666643
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.6e-88 Score=812.39 Aligned_cols=570 Identities=30% Similarity=0.406 Sum_probs=477.8
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
|||++++++|++++.+|+++||+|+|||||||++|+++++... ..++|+|+||||++|.|+++++++++++.+|.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 8999999999999999999999999999999999999998752 23589999999999999999999999999999
Q ss_pred EeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccC
Q 046397 88 SVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSAT 166 (901)
Q Consensus 88 ~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSAT 166 (901)
.|||.+++++..+.+++|+|+|+|+|++++..++.++++++|||||+|||++++|+++.+++++.. .++++|+|+||||
T Consensus 76 ~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 76 TVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999999988888999999999999999999999999999999999999999999998888776 4678999999999
Q ss_pred CCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHh
Q 046397 167 LDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKA 246 (901)
Q Consensus 167 l~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 246 (901)
++.+.|.+||++++++.++|+.|||+.+|++... . ..++..+
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~-------------~-----------------------~~~~~~v-- 197 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRG-------------D-----------------------QRLEDAV-- 197 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecch-------------h-----------------------hhHHHHH--
Confidence 9999999999999999999999999999864210 0 0000000
Q ss_pred hcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCC
Q 046397 247 ANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGS 326 (901)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~ 326 (901)
...+.++... ..|++|||+||+.+|+.+++.|.+.. ..++.++++||+
T Consensus 198 ---------------------------~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~----~~~~~v~pLHg~ 245 (819)
T TIGR01970 198 ---------------------------SRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERL----DSDVLICPLYGE 245 (819)
T ss_pred ---------------------------HHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhc----CCCcEEEEecCC
Confidence 0112222222 36899999999999999999998631 135779999999
Q ss_pred CCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC
Q 046397 327 MASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ 406 (901)
Q Consensus 327 l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~ 406 (901)
|+.++|.++|+.|++|++||||||||||+|||||+|+||||+|++|...||+.++++.|.+.||||++|.||+|||||.+
T Consensus 246 L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~ 325 (819)
T TIGR01970 246 LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE 325 (819)
T ss_pred CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCccCCCccc
Q 046397 407 PGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELT 486 (901)
Q Consensus 407 ~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gald~~~~lT 486 (901)
+|.||+||+++.|..|.++..|||+|++|++++|+++.+|+.++.+| .+++||+..++..|++.|+.+||||++|+||
T Consensus 326 ~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~~~lT 403 (819)
T TIGR01970 326 PGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQGRLT 403 (819)
T ss_pred CCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC
Confidence 99999999999999999999999999999999999999999999888 8999999999999999999999999999999
Q ss_pred hhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH
Q 046397 487 VLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKD 566 (901)
Q Consensus 487 ~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~~~~sDhl~~l~af~~w~~ 566 (901)
++|+.|+.||+||++||||+.|+.++|.+++++|||+|+.++++-. ..+|....+.++...
T Consensus 404 ~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-----------------~~~d~~~~~~~~~~~-- 464 (819)
T TIGR01970 404 AHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-----------------GGADLMNRLHRLQQG-- 464 (819)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC-----------------CcccHHHHHHHHhhc--
Confidence 9999999999999999999999999999999999999999987521 135765555444321
Q ss_pred HhhcccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhccCCCccccccCCCCC
Q 046397 567 AERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSS 646 (901)
Q Consensus 567 ~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~aglypnva~~~~~~~~~ 646 (901)
. ...|. .+.++.+|+...+ +........ .... . +-.+|+.||-..||+.. ++..
T Consensus 465 -~-----~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~--~~~~--~-~g~lla~a~pdria~~r--~~~~ 518 (819)
T TIGR01970 465 -R-----QGRGQ----------RAQQLAKKLRRRL---RFSQADSGA--IASH--A-LGLLLALAFPDRIAKRR--GQPG 518 (819)
T ss_pred -c-----hhhHH----------HHHHHHHHHHHHh---CcCcCCCcc--cccc--h-HhHHHhhhChHhheecc--CCCC
Confidence 0 01121 2233444443332 221000000 0011 1 45578888888899643 3333
Q ss_pred ccccccCCeEEEccCCccCCcCCCCCCeEEEEEEeee---cceeEeccCCCChHHHHHhcC
Q 046397 647 SLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKV---NSVFLKDSTAVSDSVLLLFGG 704 (901)
Q Consensus 647 ~~~t~~~~~v~ihpsSv~~~~~~~~~~~lvy~e~~~t---~~~~ir~~t~V~p~~llLfgg 704 (901)
.|....+..+.+++.|.+++ .+|+|..|...+ ....|+-.++|++.|+.-..+
T Consensus 519 ~y~l~~G~~~~l~~~~~l~~-----~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~ 574 (819)
T TIGR01970 519 RYQLANGRGAVLSAEDALAR-----EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLP 574 (819)
T ss_pred eEECCCCCeeEeCCCCcccC-----CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhH
Confidence 58777777899999998875 389999999734 235688999999999865433
No 12
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.3e-86 Score=803.95 Aligned_cols=558 Identities=29% Similarity=0.408 Sum_probs=468.6
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.|||+++.++|++++.++++++++|+|||||||++|+++++... ..++|+|+||||++|.|+++++++++++.+|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 59999999999999999999999999999999999999998642 1247999999999999999999999999999
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceEEEecc
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRLVLMSA 165 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~kiIlmSA 165 (901)
..|||.+++++..+..++|+|+|+|+|++++..++.++++++|||||+|||++++|+++.++++++.. ++++|+|+|||
T Consensus 78 ~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 78 ETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 99999999999888889999999999999999999999999999999999999999999998888764 67899999999
Q ss_pred CCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHH
Q 046397 166 TLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLK 245 (901)
Q Consensus 166 Tl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 245 (901)
|++.+.|++||++++++.++|+.|||+.+|+.... . ..+++.+
T Consensus 158 Tl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~-------------~-----------------------~~~~~~v- 200 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPA-------------H-----------------------QRFDEAV- 200 (812)
T ss_pred CCCHHHHHHhcCCCCEEEecCccccceEEeccCch-------------h-----------------------hhHHHHH-
Confidence 99999999999999999999999999999864210 0 0001000
Q ss_pred hhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecC
Q 046397 246 AANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHG 325 (901)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs 325 (901)
...+.++.. ...|++|||+||+.+|+.+++.|.... ..++.+.++||
T Consensus 201 ----------------------------~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~----~~~~~v~~Lhg 247 (812)
T PRK11664 201 ----------------------------ARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRV----ASDVLLCPLYG 247 (812)
T ss_pred ----------------------------HHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhc----cCCceEEEeeC
Confidence 011222222 246999999999999999999998631 12467899999
Q ss_pred CCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC
Q 046397 326 SMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV 405 (901)
Q Consensus 326 ~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~ 405 (901)
+|+.++|.++++.|++|++||||||||||+|||||+|++|||+|++|...||+.++++.|.+.||||++|.||+|||||.
T Consensus 248 ~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~ 327 (812)
T PRK11664 248 ALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL 327 (812)
T ss_pred CCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCccCCCcc
Q 046397 406 QPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEEL 485 (901)
Q Consensus 406 ~~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gald~~~~l 485 (901)
++|.||+||+++.|+.|++++.|||+|++|++++|+++++|+.++.+| .++|||+..++.+|++.|+.+||||.+|+|
T Consensus 328 ~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~g~l 405 (812)
T PRK11664 328 EPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQGRL 405 (812)
T ss_pred CCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred chhhhhhhcCCCChHHHHHHHHhhhcCChH--HHHHHHHhhcCCCCccCCCChHHHHHHHHhhcCCCCCcHHHHHHHHHH
Q 046397 486 TVLGQYLAMLPMEPKLGKMLILGAIFNCLE--PVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEG 563 (901)
Q Consensus 486 T~lG~~la~lpl~p~~~k~ll~~~~~~cl~--~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~~~~sDhl~~l~af~~ 563 (901)
|++|+.|+.||+||++||||+.|+.++|.. .+..+||+|+.+++- . .+|....+..+.
T Consensus 406 T~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~~--~-----------------~~d~~~~l~~~~- 465 (812)
T PRK11664 406 TARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPRS--G-----------------SSDLGVALSRKQ- 465 (812)
T ss_pred CHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCCC--C-----------------cccHHHHHHHHH-
Confidence 999999999999999999999999999753 677777777765320 0 134222222211
Q ss_pred HHHHhhcccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHhccCCCccccccCC
Q 046397 564 WKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNG 643 (901)
Q Consensus 564 w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~aglypnva~~~~~~ 643 (901)
..|+ ..+.++.+|+... .+ . .+...+..+||+||..+||+.. +
T Consensus 466 ----------~~~~----------~~~~~~~~~~~~~---~~--~----------~~~~~~~~~la~aypdriA~~r--~ 508 (812)
T PRK11664 466 ----------PHWQ----------QRAQQLLKRLNVR---GG--E----------ADSSLIAPLLALAFPDRIARRR--G 508 (812)
T ss_pred ----------HHHH----------HHHHHHHHHHHhh---cc--c----------CChHHHHHHHHHHCHHHHhhhc--C
Confidence 1232 2233334444221 11 0 1233478899999999999753 2
Q ss_pred CCCccccccCCeEEEccCCccCCcCCCCCCeEEEEEEeeec-c--eeEeccCCCChHHHHHhc
Q 046397 644 KSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVN-S--VFLKDSTAVSDSVLLLFG 703 (901)
Q Consensus 644 ~~~~~~t~~~~~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~-~--~~ir~~t~V~p~~llLfg 703 (901)
....|....+..+.+||+|.+++ .+|+|+.|++.++ + ..|+.+++|++.||.-..
T Consensus 509 ~~~~~~l~~G~~a~l~~~~~l~~-----~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~ 566 (812)
T PRK11664 509 QDGRYQLANGMGAMLDADDALSR-----HEWLIAPLLLQGSASPDARILLALPLDIDELVQRC 566 (812)
T ss_pred CCCeEEeeCCCeEEECCCCcccC-----CCeEEEEEhhccCccccceeeEeeccCHHHHHHHH
Confidence 22346655566699999999875 4899999997653 3 457889999999986443
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.4e-58 Score=544.21 Aligned_cols=401 Identities=22% Similarity=0.332 Sum_probs=312.8
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHH-----HHhh-----cCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILES-----EITS-----VRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~-----~~~~-----~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
..|+++++.+.+++++|+.|+||||||+|+||++++. .+.. ..+..+.|+|+||||+||.|++.++.++.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999874 1221 12234689999999999999999998877
Q ss_pred CCccCcEeeEEEecccccC-------CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhh
Q 046397 82 GEKLGESVGYKVRLEGMKG-------RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR 154 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~-------~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~ 154 (901)
|......+.+.++++.... ...+|+++|++. ..+.++++++|||||||||+..+|+++.+++++...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 6532222334555544322 235799999863 234688999999999999999999999999876654
Q ss_pred CCCceEEEeccCCC--HHHHHhhhCCCcEEeeCCcc-ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchh
Q 046397 155 RPELRLVLMSATLD--AELFSSYFGGATVINIPGFT-YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRK 231 (901)
Q Consensus 155 ~~~~kiIlmSATl~--~~~f~~yf~~~~~i~i~gr~-~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (901)
. .|+++||||++ .+.|.+||++++.++++|++ +||+.+|+++..... ...+
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~--------~~~~---------------- 374 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPK--------NKRA---------------- 374 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccc--------cchh----------------
Confidence 3 38999999995 55889999999999999996 999999986531100 0000
Q ss_pred hhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHh--hcCCCcEEEEcCCHHHHHHHHHHHHhC
Q 046397 232 RKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICE--KERPGAVLVFMTGWDDINSLNDKLQAN 309 (901)
Q Consensus 232 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~--~~~~g~iLVFl~~~~~i~~l~~~L~~~ 309 (901)
.++... ..++..+.. ...++++|||+||+.+++.+++.|.+.
T Consensus 375 -------y~~~~k-----------------------------~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~ 418 (675)
T PHA02653 375 -------YIEEEK-----------------------------KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKR 418 (675)
T ss_pred -------hhHHHH-----------------------------HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhh
Confidence 000000 001111111 124579999999999999999999865
Q ss_pred ccCCCCCceEEEEecCCCCHHHHHhhcCCC-CCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccc
Q 046397 310 RILGDPTRVLLLTCHGSMASSEQRLIFDEP-ESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPS 388 (901)
Q Consensus 310 ~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f-~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~ 388 (901)
. ..+.+.++||+|++.+| +++.| ++|+++||||||+||+|||||+|++|||+|+++... +..+ ...
T Consensus 419 ~-----~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g----~~~ 485 (675)
T PHA02653 419 L-----PIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGG----KEM 485 (675)
T ss_pred c-----CCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccC----ccc
Confidence 2 13568899999998643 33344 679999999999999999999999999999887553 2222 356
Q ss_pred cccHhcHHHHhhhcCCCCCCceEEcCCcchhhhcccCCCCcccccC---ccchhhhhhccCCCCHHHHhhhhcCCChHHH
Q 046397 389 WISTVSAQQRRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTP---LQSLCLQIKSLRLGTIAGFLSRALQSPELLA 465 (901)
Q Consensus 389 ~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~~l~~~~~PEi~r~~---L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~ 465 (901)
|+|+++|.||+|||||.++|.||+||+++.+ .| |.|.+ |.+++|++|++|++.+.++ +++||+.++
T Consensus 486 ~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~~~~---~ldpP~~~~ 554 (675)
T PHA02653 486 FISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLPEDL---FVIPSNLDR 554 (675)
T ss_pred ccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCcccc---cCCCCCHHH
Confidence 9999999999999999999999999999764 24 66666 7899999999999655443 899999999
Q ss_pred HHHHHHHHHHcCCccCCCccchh--hhhhhcCCCChHHHHHHHHhhh
Q 046397 466 VQNAIEYLKIIGALDHNEELTVL--GQYLAMLPMEPKLGKMLILGAI 510 (901)
Q Consensus 466 v~~al~~L~~~gald~~~~lT~l--G~~la~lpl~p~~~k~ll~~~~ 510 (901)
+..|++.|..+||+|+ +||.| |++|+.+ +.||++++|++
T Consensus 555 l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 555 LRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 9999999999998865 79999 9999999 99999998865
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-39 Score=394.41 Aligned_cols=434 Identities=20% Similarity=0.230 Sum_probs=292.9
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
..++++|.++++.+.+++++++++|||||||+++.+++++.... +. +++++.|+|+||.|+++++.+.. ..|.
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q~~~~~~~l~--~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAMEKYEELSRLR--SLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHHHHHHHHHHh--hcCC
Confidence 44789999999999999999999999999999999999887643 22 45555699999999999987532 3455
Q ss_pred EeeEEEecccc---cCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCc--chhHHHHHHHHHHhhCCCceEE
Q 046397 88 SVGYKVRLEGM---KGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGM--NEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 88 ~vGy~vr~e~~---~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~--~~d~ll~~lk~ll~~~~~~kiI 161 (901)
.|+..+..... .....+|+++||+.+...+.+++ .+.++++|||||+|..+- ....+..++..+....++.|+|
T Consensus 94 ~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI 173 (674)
T PRK01172 94 RVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARIL 173 (674)
T ss_pred eEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 55544321111 11357999999999888777666 589999999999997431 1223334444444456789999
Q ss_pred EeccCC-CHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 162 LMSATL-DAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 162 lmSATl-~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
+||||+ +.+.+++|++ ++.+....+..|++....... ... .+.. .
T Consensus 174 ~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~----~~~------~~~~-------------~---------- 219 (674)
T PRK01172 174 ALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRK----RLI------LDGY-------------E---------- 219 (674)
T ss_pred EEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecC----eee------eccc-------------c----------
Confidence 999999 7889999986 445555666666664322100 000 0000 0
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC------
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD------ 314 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~------ 314 (901)
..... +..++.... ..++++||||+++++++.++..|........
T Consensus 220 --------------------------~~~~~-~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~ 270 (674)
T PRK01172 220 --------------------------RSQVD-INSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSS 270 (674)
T ss_pred --------------------------ccccc-HHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccc
Confidence 00000 111122211 3468999999999999999998875411000
Q ss_pred ------------CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCc
Q 046397 315 ------------PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNT 382 (901)
Q Consensus 315 ------------~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~ 382 (901)
.....|..+||+|+.++|..+++.|++|.++|||||+++++|||+|+..+||+ +.++ |+.
T Consensus 271 ~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~~~---~~~---- 342 (674)
T PRK01172 271 ENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DITR---YGN---- 342 (674)
T ss_pred cccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-CceE---eCC----
Confidence 01135889999999999999999999999999999999999999999888875 2222 332
Q ss_pred cccccccccHhcHHHHhhhcCCCC---CCceEEcC-Ccchhh---hcccCCCCcccccCccc------hhhhhhcc----
Q 046397 383 SCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLY-PRCVYD---AFAEYQLPEILRTPLQS------LCLQIKSL---- 445 (901)
Q Consensus 383 ~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~-s~~~~~---~l~~~~~PEi~r~~L~~------~~L~~k~l---- 445 (901)
....++|.+++.||+|||||.+ .|.++.+. +...++ .+-. ..|+-..+.|.. .+|...+.
T Consensus 343 --~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~-~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~ 419 (674)
T PRK01172 343 --GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS-GEPEPVISYMGSQRKVRFNTLAAISMGLAS 419 (674)
T ss_pred --CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHc-CCCCceeecCCCcccHHHHHHHHHHhcccC
Confidence 1234689999999999999985 67777664 333233 2211 223322222221 12222233
Q ss_pred CCCCHHHHhhhhc---CCC-h--HHHHHHHHHHHHHcCCccCCC--ccchhhhhhhcCCCChHHHHHHHHhhhcC-ChHH
Q 046397 446 RLGTIAGFLSRAL---QSP-E--LLAVQNAIEYLKIIGALDHNE--ELTVLGQYLAMLPMEPKLGKMLILGAIFN-CLEP 516 (901)
Q Consensus 446 ~~~~~~~fl~~~l---~pP-~--~~~v~~al~~L~~~gald~~~--~lT~lG~~la~lpl~p~~~k~ll~~~~~~-cl~~ 516 (901)
+..++.+|+...+ +++ + .+.|+.|++.|.+.|+|+.++ .+|++|+.+|.+|++|..++++..+..-. ..+.
T Consensus 420 ~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~ 499 (674)
T PRK01172 420 SMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDL 499 (674)
T ss_pred CHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHH
Confidence 3356667753322 332 2 567999999999999998654 67999999999999999999987765432 3344
Q ss_pred HHHHHH
Q 046397 517 VLTIVA 522 (901)
Q Consensus 517 ~l~iaa 522 (901)
+|.+.+
T Consensus 500 ~l~~~~ 505 (674)
T PRK01172 500 ALYYIS 505 (674)
T ss_pred HHHHhh
Confidence 444443
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.6e-38 Score=383.93 Aligned_cols=438 Identities=19% Similarity=0.219 Sum_probs=289.0
Q ss_pred cHHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh--CCccC
Q 046397 10 AYKEKNRLLTA-ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER--GEKLG 86 (901)
Q Consensus 10 i~~~q~~il~~-i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~--~~~~g 86 (901)
.++.|.++++. +.+++++++++|||||||+.+.+++++.+.. + .+++++.|+|+||.|.++++.... |..++
T Consensus 24 l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~--~kal~i~P~raLa~q~~~~~~~~~~~g~~v~ 98 (737)
T PRK02362 24 LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---G--GKALYIVPLRALASEKFEEFERFEELGVRVG 98 (737)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---C--CcEEEEeChHHHHHHHHHHHHHhhcCCCEEE
Confidence 67889999988 7889999999999999999999999887642 2 356666799999999999997431 22222
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccC--cchhHHHHHHHHHHhhCCCceEEEe
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERG--MNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~--~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
...|-... ........+|+||||+.+...+.+.. ++.++++|||||+|.-+ -....+..++..+....++.|+|+|
T Consensus 99 ~~tGd~~~-~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~l 177 (737)
T PRK02362 99 ISTGDYDS-RDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVAL 177 (737)
T ss_pred EEeCCcCc-cccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEE
Confidence 22221100 11112357899999999988776543 68899999999999522 1122333444555555678999999
Q ss_pred ccCC-CHHHHHhhhCCCcEEeeCCccccceEEec-cchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 164 SATL-DAELFSSYFGGATVINIPGFTYPVRTHFL-EDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 164 SATl-~~~~f~~yf~~~~~i~i~gr~~pV~~~~l-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
|||+ |++.+.+|++.. .+....|..|+..... .+.+. .. + . ...
T Consensus 178 SATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~-----~~------~----~----~~~-------------- 223 (737)
T PRK02362 178 SATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIH-----FD------D----S----QRE-------------- 223 (737)
T ss_pred cccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeec-----cc------c----c----ccc--------------
Confidence 9999 778899998643 2332333333332210 00000 00 0 0 000
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC---------
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL--------- 312 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~--------- 312 (901)
+.. ...+....++.... ..++++||||+++.+++.++..|......
T Consensus 224 ------------------~~~-----~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~ 278 (737)
T PRK02362 224 ------------------VEV-----PSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAE 278 (737)
T ss_pred ------------------CCC-----ccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 000 00000111122222 25689999999999999999888653110
Q ss_pred -----------C---------CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcc
Q 046397 313 -----------G---------DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAK 372 (901)
Q Consensus 313 -----------~---------~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k 372 (901)
. ......|..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 279 ~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~---- 354 (737)
T PRK02362 279 LAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD---- 354 (737)
T ss_pred HHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----
Confidence 0 0012468899999999999999999999999999999999999999999999963
Q ss_pred ccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcch-----hhhcccCCCCcccccCc------cch
Q 046397 373 ETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCV-----YDAFAEYQLPEILRTPL------QSL 438 (901)
Q Consensus 373 ~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~-----~~~l~~~~~PEi~r~~L------~~~ 438 (901)
...||+..+. .++|.++|.||+|||||.+ .|.|+.+..... |+.+.. ..|+-..+.| .+.
T Consensus 355 ~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~ 428 (737)
T PRK02362 355 YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW-ADPEDVRSKLATEPALRTH 428 (737)
T ss_pred ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-CCCCceeecCCChhhHHHH
Confidence 2347654322 4689999999999999985 499999986531 222221 1233333333 233
Q ss_pred hhhhhccC----CCCHHHHhhhhc-CCC------hHHHHHHHHHHHHHcCCccCCCc---cchhhhhhhcCCCChHHHHH
Q 046397 439 CLQIKSLR----LGTIAGFLSRAL-QSP------ELLAVQNAIEYLKIIGALDHNEE---LTVLGQYLAMLPMEPKLGKM 504 (901)
Q Consensus 439 ~L~~k~l~----~~~~~~fl~~~l-~pP------~~~~v~~al~~L~~~gald~~~~---lT~lG~~la~lpl~p~~~k~ 504 (901)
++...+.+ ..++.+|+...+ ..+ -.+.++.+++.|.+.|+|+.++. +|++|+.++.++++|..++.
T Consensus 429 lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~ 508 (737)
T PRK02362 429 VLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAE 508 (737)
T ss_pred HHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHH
Confidence 34333333 235556653322 111 23468999999999999987754 89999999999999999999
Q ss_pred HHHhhhcC---ChHHHHHHHH
Q 046397 505 LILGAIFN---CLEPVLTIVA 522 (901)
Q Consensus 505 ll~~~~~~---cl~~~l~iaa 522 (901)
+..+..-. ....+|.+.|
T Consensus 509 ~~~~l~~~~~~~~~~~l~~i~ 529 (737)
T PRK02362 509 IIDGLEAAKKPTDLGLLHLVC 529 (737)
T ss_pred HHHHhhhcccCchHHHHHHhh
Confidence 88765432 2334555554
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-35 Score=358.60 Aligned_cols=434 Identities=19% Similarity=0.184 Sum_probs=276.8
Q ss_pred cHHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 10 AYKEKNRLLTA-ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 10 i~~~q~~il~~-i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
.++.|.++++. +.+++++++++|||||||+.+..++++.+... + .+++++.|+++||.|+++++... . ..|..
T Consensus 24 l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~--~~~l~l~P~~aLa~q~~~~~~~~-~-~~g~~ 97 (720)
T PRK00254 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--G--GKAVYLVPLKALAEEKYREFKDW-E-KLGLR 97 (720)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--C--CeEEEEeChHHHHHHHHHHHHHH-h-hcCCE
Confidence 57889999986 78999999999999999999999998877542 2 35667779999999999988652 1 23444
Q ss_pred eeEEEe-c--ccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEe
Q 046397 89 VGYKVR-L--EGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLM 163 (901)
Q Consensus 89 vGy~vr-~--e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlm 163 (901)
|+.-.. . +.....+++|+|+||+.+...+.... +++++++|||||+|.-+-. + ....+..++. ..++.|+|+|
T Consensus 98 v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~-~-rg~~le~il~~l~~~~qiI~l 175 (720)
T PRK00254 98 VAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY-D-RGATLEMILTHMLGRAQILGL 175 (720)
T ss_pred EEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc-c-chHHHHHHHHhcCcCCcEEEE
Confidence 432211 1 11112357899999999988776543 7899999999999953211 1 0111222222 2356899999
Q ss_pred ccCC-CHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHH
Q 046397 164 SATL-DAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVED 242 (901)
Q Consensus 164 SATl-~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (901)
|||+ |++.+.+|++.. .+....+..|+....... ++.... +. . .....
T Consensus 176 SATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~-----~~~~~~-----~~--------------~-~~~~~----- 224 (720)
T PRK00254 176 SATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQ-----GFLFWE-----DG--------------K-IERFP----- 224 (720)
T ss_pred EccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecC-----Ceeecc-----Cc--------------c-hhcch-----
Confidence 9999 788999998743 333333433332211100 000000 00 0 00000
Q ss_pred HHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc--C--------
Q 046397 243 TLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI--L-------- 312 (901)
Q Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~--~-------- 312 (901)
.....++..... .++++||||+++..++.++..|..... .
T Consensus 225 ----------------------------~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 274 (720)
T PRK00254 225 ----------------------------NSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRAL 274 (720)
T ss_pred ----------------------------HHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 000011112222 357899999999999988777643100 0
Q ss_pred -----------C-----CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccccc
Q 046397 313 -----------G-----DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSY 376 (901)
Q Consensus 313 -----------~-----~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~y 376 (901)
. ......|.+|||+|++++|..+++.|++|.++|||||+++++|||+|++++||.... .|
T Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~----~~ 350 (720)
T PRK00254 275 KELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTK----RY 350 (720)
T ss_pred HHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCce----Ec
Confidence 0 001235889999999999999999999999999999999999999999999996332 24
Q ss_pred ccCCCccccccccccHhcHHHHhhhcCCC---CCCceEEcCCcch----hhhcccCCCCcccccCc------cchhhhhh
Q 046397 377 DALNNTSCLLPSWISTVSAQQRRGRAGRV---QPGECYRLYPRCV----YDAFAEYQLPEILRTPL------QSLCLQIK 443 (901)
Q Consensus 377 d~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~s~~~----~~~l~~~~~PEi~r~~L------~~~~L~~k 443 (901)
+. .+ ..+++.+++.||+|||||. ..|.|+.+.+... ++.+.. ..||-+..++ .+.++...
T Consensus 351 ~~-~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~-~~pe~l~s~l~~es~l~~~ll~~i 423 (720)
T PRK00254 351 SN-FG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF-GKPEKLFSMLSNESAFRSQVLALI 423 (720)
T ss_pred CC-CC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh-CCchhhhccCCchHHHHHHHHHHH
Confidence 31 11 1234567899999999997 3699998876433 332211 1232222222 12222222
Q ss_pred ccC-C---CCHHHHhhhhc---CCCh----HHHHHHHHHHHHHcCCccCC--C--ccchhhhhhhcCCCChHHHHHHHHh
Q 046397 444 SLR-L---GTIAGFLSRAL---QSPE----LLAVQNAIEYLKIIGALDHN--E--ELTVLGQYLAMLPMEPKLGKMLILG 508 (901)
Q Consensus 444 ~l~-~---~~~~~fl~~~l---~pP~----~~~v~~al~~L~~~gald~~--~--~lT~lG~~la~lpl~p~~~k~ll~~ 508 (901)
..+ + .++.+||...+ ..|+ ...++.++..|.+.|.|+.+ + ..|++|+.++.++++|..++++..+
T Consensus 424 ~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~ 503 (720)
T PRK00254 424 TNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDA 503 (720)
T ss_pred HhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHH
Confidence 222 2 34445654433 2233 34678899999999998643 2 5799999999999999999988765
Q ss_pred hh----cCChHHHHHHHHh
Q 046397 509 AI----FNCLEPVLTIVAG 523 (901)
Q Consensus 509 ~~----~~cl~~~l~iaa~ 523 (901)
.. -.....+|.+.+.
T Consensus 504 l~~~~~~~~~~~~l~~~~~ 522 (720)
T PRK00254 504 FPKIEKNPNPLGIFQLIAS 522 (720)
T ss_pred HHhhccCCCHHHHHHHhhC
Confidence 43 2344556665543
No 17
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-37 Score=322.69 Aligned_cols=307 Identities=21% Similarity=0.280 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVG 90 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vG 90 (901)
...|.+.++.+..+++||..++||||||.++.++|++++++..+. ...+|+.|+|+||.|+++.+ +.+|..+|
T Consensus 85 T~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~--~~~lVLtPtRELA~QI~e~f-----e~Lg~~ig 157 (476)
T KOG0330|consen 85 TKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKL--FFALVLTPTRELAQQIAEQF-----EALGSGIG 157 (476)
T ss_pred chhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC--ceEEEecCcHHHHHHHHHHH-----HHhccccC
Confidence 457888999999999999999999999999999999999986554 45555669999999999988 44444444
Q ss_pred EEEe----c------ccccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCC
Q 046397 91 YKVR----L------EGMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPE 157 (901)
Q Consensus 91 y~vr----~------e~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~ 157 (901)
..+. . .....++++|+|+|||.|..++.+.. .++.+.++|+|||+ |-++.||... +..+++. .+.
T Consensus 158 lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~-ld~ILk~ip~e 235 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEE-LDYILKVIPRE 235 (476)
T ss_pred eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHH-HHHHHHhcCcc
Confidence 3321 1 11234679999999999999998544 78999999999999 6677777654 4445554 456
Q ss_pred ceEEEeccCCCHH--HHHhh-hCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 158 LRLVLMSATLDAE--LFSSY-FGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 158 ~kiIlmSATl~~~--~f~~y-f~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
.|.+++|||+..+ .+..- ..++.-+.++..---
T Consensus 236 rqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~t-------------------------------------------- 271 (476)
T KOG0330|consen 236 RQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQT-------------------------------------------- 271 (476)
T ss_pred ceEEEEEeecchhhHHHHhhccCCCeEEeccchhcc--------------------------------------------
Confidence 7899999999654 22211 111111111111000
Q ss_pred hhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC
Q 046397 235 QIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD 314 (901)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 314 (901)
.+.+.+..- .+........+.++.+...++.+||||++....+.++-.|...++.
T Consensus 272 --v~~lkQ~yl---------------------fv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~-- 326 (476)
T KOG0330|consen 272 --VDHLKQTYL---------------------FVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQ-- 326 (476)
T ss_pred --hHHhhhheE---------------------eccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcc--
Confidence 000000000 0000111122445666666799999999999999999999987654
Q ss_pred CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhc
Q 046397 315 PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVS 394 (901)
Q Consensus 315 ~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~ 394 (901)
.+++||.|++..|...|+.|++|.+.|++||++|++|+|||.|++||| ||.|.....
T Consensus 327 -----a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yDiP~~skD---------- 383 (476)
T KOG0330|consen 327 -----AIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YDIPTHSKD---------- 383 (476)
T ss_pred -----eecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cCCCCcHHH----------
Confidence 569999999999999999999999999999999999999999999999 888776654
Q ss_pred HHHHhhhcCCC-CCCceEEcCCcch
Q 046397 395 AQQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 395 ~~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
|+||+||+||. ++|..+.|.+..+
T Consensus 384 YIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 384 YIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred HHHHcccccccCCCcceEEEEehhh
Confidence 55999999999 6899999999833
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.3e-35 Score=343.66 Aligned_cols=310 Identities=18% Similarity=0.227 Sum_probs=220.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.++.|.++++.+.++++++++||||||||+++.+++++.+..... .+.++++.|+|+||.|+++.+........+..+
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~--~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v 104 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRF--RVQALVLCPTRELADQVAKEIRRLARFIPNIKV 104 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccC--CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 467899999999999999999999999999999999987643222 334555569999999999888654321112222
Q ss_pred eE-----EE--ecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceE
Q 046397 90 GY-----KV--RLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRL 160 (901)
Q Consensus 90 Gy-----~v--r~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~ki 160 (901)
.. .+ ..+. ....++|+|+|||.|++.+.... .+.++++||+||||+. .+..+... +..++... ++.++
T Consensus 105 ~~~~Gg~~~~~~~~~-l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~-l~~g~~~~-l~~i~~~~~~~~q~ 181 (460)
T PRK11776 105 LTLCGGVPMGPQIDS-LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM-LDMGFQDA-IDAIIRQAPARRQT 181 (460)
T ss_pred EEEECCCChHHHHHH-hcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHH-hCcCcHHH-HHHHHHhCCcccEE
Confidence 11 11 1111 12468999999999999887654 6899999999999952 33333332 34444443 46789
Q ss_pred EEeccCCCHH--HHHhhh-CCCcEEeeCCcc--ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhh
Q 046397 161 VLMSATLDAE--LFSSYF-GGATVINIPGFT--YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQ 235 (901)
Q Consensus 161 IlmSATl~~~--~f~~yf-~~~~~i~i~gr~--~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (901)
+++|||++.. .+...| .++..+.+.... ..++.+|..- .
T Consensus 182 ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~---------~--------------------------- 225 (460)
T PRK11776 182 LLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEV---------S--------------------------- 225 (460)
T ss_pred EEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEe---------C---------------------------
Confidence 9999999654 444443 444334443211 1122222110 0
Q ss_pred hHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC
Q 046397 236 IASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP 315 (901)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 315 (901)
.......+.++.....++++||||+++.+++.+++.|...+
T Consensus 226 ----------------------------------~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~----- 266 (460)
T PRK11776 226 ----------------------------------PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQG----- 266 (460)
T ss_pred ----------------------------------cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCC-----
Confidence 00001123333444566789999999999999999998764
Q ss_pred CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcH
Q 046397 316 TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSA 395 (901)
Q Consensus 316 ~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~ 395 (901)
+.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||+ ||.+.+.. +|
T Consensus 267 --~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d~p~~~~----------~y 326 (460)
T PRK11776 267 --FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YELARDPE----------VH 326 (460)
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE--------ecCCCCHh----------Hh
Confidence 34779999999999999999999999999999999999999999999999 66555444 55
Q ss_pred HHHhhhcCCC-CCCceEEcCCcchh
Q 046397 396 QQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 396 ~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
.||+|||||. +.|.||.|++....
T Consensus 327 iqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 327 VHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred hhhcccccCCCCcceEEEEEchhHH
Confidence 6999999998 57999999987644
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-35 Score=338.69 Aligned_cols=312 Identities=19% Similarity=0.220 Sum_probs=221.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC-----CCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR-----GAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~-----~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
..+.|.++++.+.++++++++||||||||+++..++++.+..... ...+.++++.|+|+||.|+++.+.... ..
T Consensus 31 pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~-~~ 109 (423)
T PRK04837 31 CTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLA-QA 109 (423)
T ss_pred CCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHh-cc
Confidence 357899999999999999999999999999999999987764321 123567777899999999988764432 23
Q ss_pred cCcEeeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-
Q 046397 85 LGESVGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP- 156 (901)
Q Consensus 85 ~g~~vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~- 156 (901)
.+..++.-...+. .....++|+|+||+.|++.+.... .++++.+|||||||+. .+..+. ..++.++...+
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l-~~~~f~-~~i~~i~~~~~~ 187 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRM-FDLGFI-KDIRWLFRRMPP 187 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHH-hhcccH-HHHHHHHHhCCC
Confidence 3433433222211 112457999999999999887654 7899999999999952 232332 23444555444
Q ss_pred --CceEEEeccCCCHHH---HHhhhCCCcEEeeCCcccc---ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhccc
Q 046397 157 --ELRLVLMSATLDAEL---FSSYFGGATVINIPGFTYP---VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA 228 (901)
Q Consensus 157 --~~kiIlmSATl~~~~---f~~yf~~~~~i~i~gr~~p---V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (901)
..+.+++|||++... ...++.++..+.+...... +...+..
T Consensus 188 ~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~------------------------------- 236 (423)
T PRK04837 188 ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFY------------------------------- 236 (423)
T ss_pred ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEe-------------------------------
Confidence 345789999997642 2244444433333211100 0000000
Q ss_pred chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHh
Q 046397 229 PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA 308 (901)
Q Consensus 229 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 308 (901)
.........+..+......+++||||+++..++.+++.|..
T Consensus 237 ---------------------------------------~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~ 277 (423)
T PRK04837 237 ---------------------------------------PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA 277 (423)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh
Confidence 00000011223333344567999999999999999999987
Q ss_pred CccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccc
Q 046397 309 NRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPS 388 (901)
Q Consensus 309 ~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~ 388 (901)
.+ +.+..+||+|+.++|..+++.|++|+.+|||||+++++|||||+|++||+ ||.+.+...|+
T Consensus 278 ~g-------~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~P~s~~~yi-- 340 (423)
T PRK04837 278 DG-------HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YDLPDDCEDYV-- 340 (423)
T ss_pred CC-------CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eCCCCchhheE--
Confidence 53 34779999999999999999999999999999999999999999999999 88877666555
Q ss_pred cccHhcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 389 WISTVSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 389 ~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
||+|||||. +.|.|+.+++++..
T Consensus 341 --------qR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 341 --------HRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred --------eccccccCCCCCeeEEEEeCHHHH
Confidence 999999999 57999999987643
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.4e-34 Score=335.92 Aligned_cols=312 Identities=21% Similarity=0.252 Sum_probs=221.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC----CCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR----GAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~----~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
.+++|.++++.+.+++++++++|||||||.++.+++++.+..... ...++++++.|+|+||.|+.+.+...... .
T Consensus 24 pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~-~ 102 (456)
T PRK10590 24 PTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKY-L 102 (456)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhcc-C
Confidence 467899999999999999999999999999999999988754221 12346777779999999999988765422 1
Q ss_pred CcEe----e-EEEecc-cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CC
Q 046397 86 GESV----G-YKVRLE-GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PE 157 (901)
Q Consensus 86 g~~v----G-y~vr~e-~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~ 157 (901)
+..+ | .....+ ......++|+|+||+.|+..+.... .++++++|||||||. -++..+.. .++.++... +.
T Consensus 103 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~-ll~~~~~~-~i~~il~~l~~~ 180 (456)
T PRK10590 103 NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR-MLDMGFIH-DIRRVLAKLPAK 180 (456)
T ss_pred CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH-HhccccHH-HHHHHHHhCCcc
Confidence 1111 1 111000 0112467999999999999877655 689999999999995 23333333 334444433 45
Q ss_pred ceEEEeccCCCHH--HH-HhhhCCCcEEeeCCcccc---ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchh
Q 046397 158 LRLVLMSATLDAE--LF-SSYFGGATVINIPGFTYP---VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRK 231 (901)
Q Consensus 158 ~kiIlmSATl~~~--~f-~~yf~~~~~i~i~gr~~p---V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (901)
.+++++|||++.+ .+ ..++.+...+.+..+... +..++..
T Consensus 181 ~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~---------------------------------- 226 (456)
T PRK10590 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHF---------------------------------- 226 (456)
T ss_pred CeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEE----------------------------------
Confidence 6899999999764 33 345544444443322110 1100000
Q ss_pred hhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc
Q 046397 232 RKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI 311 (901)
Q Consensus 232 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 311 (901)
++......++.++.......++||||+++.+++.+++.|...+
T Consensus 227 ------------------------------------~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g- 269 (456)
T PRK10590 227 ------------------------------------VDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG- 269 (456)
T ss_pred ------------------------------------cCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC-
Confidence 0000011233344444556799999999999999999998754
Q ss_pred CCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccccccc
Q 046397 312 LGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIS 391 (901)
Q Consensus 312 ~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iS 391 (901)
+.+..+||+|+.++|.++++.|++|+.+|||||+++++|||||+|++||+ ||.+.+.
T Consensus 270 ------~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~--------- 326 (456)
T PRK10590 270 ------IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YELPNVP--------- 326 (456)
T ss_pred ------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCH---------
Confidence 34678999999999999999999999999999999999999999999999 7766544
Q ss_pred HhcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 392 TVSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 392 ka~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
.+|.||+|||||. ..|.|+.+++....
T Consensus 327 -~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 327 -EDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred -HHhhhhccccccCCCCeeEEEEecHHHH
Confidence 4566999999998 57999999876543
No 21
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.2e-35 Score=342.75 Aligned_cols=315 Identities=21% Similarity=0.254 Sum_probs=219.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc---CCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV---RGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~---~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+..|.+.++.+.+++++|+++|||||||+++.++++....... .+....++|+.|||+||.|+.+.+.+.. ...+
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~-~~~~ 231 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG-ASSK 231 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh-cccC
Confidence 46789999999999999999999999999999888887765321 1223456677799999999988775543 2222
Q ss_pred cE--eeEEEec----ccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 87 ES--VGYKVRL----EGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 87 ~~--vGy~vr~----e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
.. +.|.-.- ........+|+|+||+.|++.+.... .+.++++|||||||. -++..|...+.+.+...+++.+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~-mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR-MLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh-hhhcchHHHHHHHHHhCCCCCe
Confidence 11 1121100 00112357899999999999987654 789999999999994 3455554444333334567889
Q ss_pred EEEeccCCCHH--HHHh-hhCCCcE-EeeCCcc----ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchh
Q 046397 160 LVLMSATLDAE--LFSS-YFGGATV-INIPGFT----YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRK 231 (901)
Q Consensus 160 iIlmSATl~~~--~f~~-yf~~~~~-i~i~gr~----~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (901)
++++|||++.+ .+.+ ++...++ +.+.... ..++..+..
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~---------------------------------- 356 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFV---------------------------------- 356 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEE----------------------------------
Confidence 99999999654 3333 3332222 2221100 000000000
Q ss_pred hhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc
Q 046397 232 RKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI 311 (901)
Q Consensus 232 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 311 (901)
++ +......+..++..+.. ..+++||||+++++++.+++.|...++
T Consensus 357 --------~~------------------------~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~g~ 402 (545)
T PTZ00110 357 --------VE------------------------EHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLDGW 402 (545)
T ss_pred --------Ee------------------------chhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHcCC
Confidence 00 00000111122222221 467999999999999999999986543
Q ss_pred CCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccccccc
Q 046397 312 LGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIS 391 (901)
Q Consensus 312 ~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iS 391 (901)
.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+ ||.+.+.
T Consensus 403 -------~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~--------- 458 (545)
T PTZ00110 403 -------PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FDFPNQI--------- 458 (545)
T ss_pred -------cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eCCCCCH---------
Confidence 3668999999999999999999999999999999999999999999999 7766544
Q ss_pred HhcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 392 TVSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 392 ka~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
.+|.||+||+||. .+|.||.+|+....
T Consensus 459 -~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 459 -EDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred -HHHHHHhcccccCCCCceEEEEECcchH
Confidence 4566999999999 68999999997654
No 22
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-35 Score=328.01 Aligned_cols=320 Identities=22% Similarity=0.296 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhh----cCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITS----VRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~----~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
...|.+.++.+..+++++..+.||||||+.+.++++.++... .++....++|+.|||+||.|+.+.+ .+++..++
T Consensus 115 tpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~-~~~~~~~~ 193 (519)
T KOG0331|consen 115 TPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEA-REFGKSLR 193 (519)
T ss_pred chhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHH-HHHcCCCC
Confidence 455777888899999999999999999999999999888651 2333456777779999999988766 44444444
Q ss_pred --cEeeEE-----EecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCC
Q 046397 87 --ESVGYK-----VRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPE 157 (901)
Q Consensus 87 --~~vGy~-----vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~ 157 (901)
..+=|. -... ......+|+++|||+|+.++.... .|++++++|+|||+ |.++.+|-..+-+.+-.. +++
T Consensus 194 ~~~~cvyGG~~~~~Q~~-~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~ 271 (519)
T KOG0331|consen 194 LRSTCVYGGAPKGPQLR-DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPD 271 (519)
T ss_pred ccEEEEeCCCCccHHHH-HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCc
Confidence 222121 1111 122468999999999999998776 89999999999999 667777655554444444 344
Q ss_pred ceEEEeccCCCHH--HHH-hhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 158 LRLVLMSATLDAE--LFS-SYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 158 ~kiIlmSATl~~~--~f~-~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
.+.++.|||.+.+ .|+ +|+.+.-.+.+-+. ++.. ......
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~---------~~~~----------------------------a~~~i~ 314 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNK---------KELK----------------------------ANHNIR 314 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHhcCceEEEecch---------hhhh----------------------------hhcchh
Confidence 5799999999776 333 44443222222211 0000 000000
Q ss_pred hhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC
Q 046397 235 QIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD 314 (901)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 314 (901)
++...++.. -....+..++..+. ...++++||||.++..++++...|...+
T Consensus 315 qive~~~~~------------------------~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~---- 365 (519)
T KOG0331|consen 315 QIVEVCDET------------------------AKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKG---- 365 (519)
T ss_pred hhhhhcCHH------------------------HHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcC----
Confidence 111111100 01123444555554 5578999999999999999999998754
Q ss_pred CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhc
Q 046397 315 PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVS 394 (901)
Q Consensus 315 ~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~ 394 (901)
+....+||+.++.||..+++.|++|...||||||+|++|+|||||++||+ ||+|.++..|+
T Consensus 366 ---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdYV-------- 426 (519)
T KOG0331|consen 366 ---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDYV-------- 426 (519)
T ss_pred ---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CCCCCCHHHHH--------
Confidence 33669999999999999999999999999999999999999999999999 99999888666
Q ss_pred HHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 395 AQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 395 ~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
||+||+||. +.|..|.+|+...+.
T Consensus 427 --HRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 427 --HRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred --hhcCccccCCCCceEEEEEeHHHHH
Confidence 999999996 789999999987664
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3e-34 Score=341.35 Aligned_cols=310 Identities=18% Similarity=0.246 Sum_probs=223.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+++|.++++.+.+++++|+.||||||||+++.+++++.+..... ...++|+.|+|+||.|+++.+....+...+..+
T Consensus 29 ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~--~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v 106 (629)
T PRK11634 29 PSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELK--APQILVLAPTRELAVQVAEAMTDFSKHMRGVNV 106 (629)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccC--CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 567899999999999999999999999999999999887643222 345677779999999999988766543323332
Q ss_pred eEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceEE
Q 046397 90 GYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRLV 161 (901)
Q Consensus 90 Gy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~kiI 161 (901)
..-..... .....++|+|+||+.|++.+.... .++++++|||||||+. +...|... +..++.. .+..+++
T Consensus 107 ~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m-l~~gf~~d-i~~Il~~lp~~~q~l 184 (629)
T PRK11634 107 VALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM-LRMGFIED-VETIMAQIPEGHQTA 184 (629)
T ss_pred EEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH-hhcccHHH-HHHHHHhCCCCCeEE
Confidence 21111110 112457999999999999988765 6899999999999973 22233322 3334433 3467899
Q ss_pred EeccCCCHH---HHHhhhCCCcEEeeCCccc---cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhh
Q 046397 162 LMSATLDAE---LFSSYFGGATVINIPGFTY---PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQ 235 (901)
Q Consensus 162 lmSATl~~~---~f~~yf~~~~~i~i~gr~~---pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (901)
+||||++.. ....|+.++..+.+..... .+...|..- .
T Consensus 185 lfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v------------------------------~------ 228 (629)
T PRK11634 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTV------------------------------W------ 228 (629)
T ss_pred EEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEe------------------------------c------
Confidence 999999654 2345665555554442211 011111100 0
Q ss_pred hHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC
Q 046397 236 IASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP 315 (901)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 315 (901)
..+ ....+..+........+||||+++.++..+++.|...+
T Consensus 229 ---------------------------------~~~-k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g----- 269 (629)
T PRK11634 229 ---------------------------------GMR-KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNG----- 269 (629)
T ss_pred ---------------------------------hhh-HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCC-----
Confidence 000 00112233334456789999999999999999998764
Q ss_pred CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcH
Q 046397 316 TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSA 395 (901)
Q Consensus 316 ~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~ 395 (901)
+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+ ||.+.+. .+|
T Consensus 270 --~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d~P~~~----------e~y 329 (629)
T PRK11634 270 --YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YDIPMDS----------ESY 329 (629)
T ss_pred --CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eCCCCCH----------HHH
Confidence 34678999999999999999999999999999999999999999999999 7776544 456
Q ss_pred HHHhhhcCCC-CCCceEEcCCcch
Q 046397 396 QQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 396 ~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
.||+|||||. +.|.++.+++...
T Consensus 330 vqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 330 VHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred HHHhccccCCCCcceEEEEechHH
Confidence 6999999999 4699999987643
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.2e-34 Score=333.18 Aligned_cols=314 Identities=18% Similarity=0.238 Sum_probs=222.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc--CCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV--RGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~--~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
.+.+|.++++.+.+++++++++|||||||+++..++++.+.... .+...+++|++|+++||.|+++.+.... ...+.
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~-~~~~~ 102 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA-KHTHL 102 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH-ccCCc
Confidence 56799999999999999999999999999999999888765321 2234578888899999999998775543 22233
Q ss_pred EeeEEEec------ccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCce
Q 046397 88 SVGYKVRL------EGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELR 159 (901)
Q Consensus 88 ~vGy~vr~------e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~k 159 (901)
.++.-... ......+.+|+|+|||+|++.+.... .+.++++|||||||.- ++..+. ..+..+.. .....+
T Consensus 103 ~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~-l~~~~~-~~~~~i~~~~~~~~q 180 (434)
T PRK11192 103 DIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM-LDMGFA-QDIETIAAETRWRKQ 180 (434)
T ss_pred EEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH-hCCCcH-HHHHHHHHhCccccE
Confidence 33221111 11123467899999999999887765 5889999999999952 222222 22333333 334568
Q ss_pred EEEeccCCCHH---HHHhhhCCCc-EEeeCCccc---cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhh
Q 046397 160 LVLMSATLDAE---LFSSYFGGAT-VINIPGFTY---PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKR 232 (901)
Q Consensus 160 iIlmSATl~~~---~f~~yf~~~~-~i~i~gr~~---pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (901)
+++||||++.. .|..++...| .+.+..... .+..+|..
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~----------------------------------- 225 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYR----------------------------------- 225 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEE-----------------------------------
Confidence 99999999754 3444433222 122111000 00000000
Q ss_pred hhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC
Q 046397 233 KSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL 312 (901)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 312 (901)
.-+......++.++......+++||||+++++++.+++.|...+
T Consensus 226 ----------------------------------~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~-- 269 (434)
T PRK11192 226 ----------------------------------ADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG-- 269 (434)
T ss_pred ----------------------------------eCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC--
Confidence 00001122345555555567899999999999999999998753
Q ss_pred CCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccH
Q 046397 313 GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIST 392 (901)
Q Consensus 313 ~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk 392 (901)
+.+..+||+|+..+|..+++.|++|..+|||||+++++|||+|+|++||+ ||.+. |.
T Consensus 270 -----~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d~p~----------s~ 326 (434)
T PRK11192 270 -----INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FDMPR----------SA 326 (434)
T ss_pred -----CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------ECCCC----------CH
Confidence 34778999999999999999999999999999999999999999999999 76654 44
Q ss_pred hcHHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 393 VSAQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 393 a~~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
..|.||+|||||. ..|.++.+++...+.
T Consensus 327 ~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 327 DTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred HHHhhcccccccCCCCceEEEEecHHHHH
Confidence 5666999999998 579999999876654
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.4e-34 Score=338.08 Aligned_cols=311 Identities=17% Similarity=0.210 Sum_probs=219.8
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-----CCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-----RGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-----~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
.++.|.+.++.+.+++++++.+|||||||+++.+++++.+.... ....+.++|+.|+|+||.|+++.+... +..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l-~~~ 110 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF-GAD 110 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH-hcc
Confidence 46789999999999999999999999999999999998775421 112356777779999999999887443 334
Q ss_pred cCcEeeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC
Q 046397 85 LGESVGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP 156 (901)
Q Consensus 85 ~g~~vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~ 156 (901)
.+..++.-..... ......+|+|+||+.|++.+.... .+..+++|||||||+. ++..|. ..+..++...+
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~l-ld~gf~-~~i~~il~~lp 188 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM-FDLGFI-KDIRFLLRRMP 188 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHH-hhcchH-HHHHHHHHhcc
Confidence 4433332221111 112357899999999999887653 5788999999999963 222222 23344444443
Q ss_pred ---CceEEEeccCCCHHH---HHhhhCCCcEEeeCCcccc---ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcc
Q 046397 157 ---ELRLVLMSATLDAEL---FSSYFGGATVINIPGFTYP---VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQ 227 (901)
Q Consensus 157 ---~~kiIlmSATl~~~~---f~~yf~~~~~i~i~gr~~p---V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (901)
+.++++||||++... ...++.....+.+...... +...+...
T Consensus 189 ~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~----------------------------- 239 (572)
T PRK04537 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP----------------------------- 239 (572)
T ss_pred cccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-----------------------------
Confidence 578999999997643 2344443322322211110 00000000
Q ss_pred cchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHH
Q 046397 228 APRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQ 307 (901)
Q Consensus 228 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 307 (901)
.+.+.+ ..+..++......++||||+++..++.+++.|.
T Consensus 240 ----------------------------------------~~~~k~-~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~ 278 (572)
T PRK04537 240 ----------------------------------------ADEEKQ-TLLLGLLSRSEGARTMVFVNTKAFVERVARTLE 278 (572)
T ss_pred ----------------------------------------CHHHHH-HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHH
Confidence 000000 122233344556799999999999999999998
Q ss_pred hCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccc
Q 046397 308 ANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLP 387 (901)
Q Consensus 308 ~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~ 387 (901)
..+ +.+..+||+|+..+|.++++.|++|+.+|||||+++++|||||+|++||+ ||.+.+
T Consensus 279 ~~g-------~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd~P~s------ 337 (572)
T PRK04537 279 RHG-------YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YDLPFD------ 337 (572)
T ss_pred HcC-------CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cCCCCC------
Confidence 764 34789999999999999999999999999999999999999999999999 766544
Q ss_pred ccccHhcHHHHhhhcCCC-CCCceEEcCCcch
Q 046397 388 SWISTVSAQQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 388 ~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
..+|.||+|||||. ..|.|+.+++...
T Consensus 338 ----~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 338 ----AEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred ----HHHHhhhhcccccCCCCceEEEEecHHH
Confidence 44666999999998 6799999987643
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-34 Score=336.33 Aligned_cols=310 Identities=18% Similarity=0.238 Sum_probs=218.8
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-----CeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG-----AVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-----~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
.+.+|.++++.+.+++++|+++|||||||+++.+++++.+...... ...+++++.|+|+||.|+++.+..... .
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~-~ 188 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTK-Y 188 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhc-c
Confidence 5789999999999999999999999999999999999887653211 124566677999999999988865432 2
Q ss_pred cCcEeeEEEe-------cccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC
Q 046397 85 LGESVGYKVR-------LEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP 156 (901)
Q Consensus 85 ~g~~vGy~vr-------~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~ 156 (901)
.+..+.--+. .+......++|+|+||++|+..+.... .++++++|||||+|.. .... +...++.++...+
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l-~~~~-~~~~l~~i~~~~~ 266 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRM-LDMG-FIPQVRQIIRQTP 266 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHH-Hhcc-cHHHHHHHHHhCC
Confidence 2322221111 111123457999999999998776544 7899999999999962 2222 2233455555433
Q ss_pred ---CceEEEeccCCCHH--HHH-hhhCCCcEEeeCCcccc---ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcc
Q 046397 157 ---ELRLVLMSATLDAE--LFS-SYFGGATVINIPGFTYP---VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQ 227 (901)
Q Consensus 157 ---~~kiIlmSATl~~~--~f~-~yf~~~~~i~i~gr~~p---V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (901)
+.++|++|||++.+ .+. .|..+...+.+...... ++.++.. .
T Consensus 267 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~-------------------- 317 (475)
T PRK01297 267 RKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYA---------V-------------------- 317 (475)
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEE---------e--------------------
Confidence 56899999998653 333 34434333333211100 0000000 0
Q ss_pred cchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHH
Q 046397 228 APRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQ 307 (901)
Q Consensus 228 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 307 (901)
.......++..++......++||||+++++++.+++.|.
T Consensus 318 -----------------------------------------~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~ 356 (475)
T PRK01297 318 -----------------------------------------AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLV 356 (475)
T ss_pred -----------------------------------------cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 000001123334444556799999999999999999997
Q ss_pred hCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccc
Q 046397 308 ANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLP 387 (901)
Q Consensus 308 ~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~ 387 (901)
..+ +.+..+||+++.++|.++++.|++|+.+|||||+++++|||||+|++||+ ||.+.
T Consensus 357 ~~~-------~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~------- 414 (475)
T PRK01297 357 KDG-------INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPE------- 414 (475)
T ss_pred HcC-------CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCC-------
Confidence 653 33668999999999999999999999999999999999999999999999 55443
Q ss_pred ccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 388 SWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 388 ~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|.++|+||+|||||. +.|.++.+++++
T Consensus 415 ---s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 415 ---DPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred ---CHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 566788999999999 579999999875
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.3e-34 Score=335.26 Aligned_cols=315 Identities=19% Similarity=0.215 Sum_probs=218.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-----CCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-----RGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-----~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
..+.|.+.++.+.+++++++++|||||||+++.++++..+.... .+....++++.|+|+||.|+.+.+... +..
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~~~ 222 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-GKG 222 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH-hCC
Confidence 46789999999999999999999999999999999988765321 113346677779999999988776543 333
Q ss_pred cCcEeeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCC
Q 046397 85 LGESVGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPE 157 (901)
Q Consensus 85 ~g~~vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~ 157 (901)
++..+..-+..+. ......+|+|+|||.|+..+.... .++++++|||||||.. .+..| ...+..++...++
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~m-l~~gf-~~~i~~i~~~l~~ 300 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCM-LERGF-RDQVMQIFQALSQ 300 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHH-hhcch-HHHHHHHHHhCCC
Confidence 3222111111111 112457999999999999887654 7899999999999952 22222 2334455556678
Q ss_pred ceEEEeccCCCHH--HHHhhhCCCc-EEeeCCcccc---ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchh
Q 046397 158 LRLVLMSATLDAE--LFSSYFGGAT-VINIPGFTYP---VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRK 231 (901)
Q Consensus 158 ~kiIlmSATl~~~--~f~~yf~~~~-~i~i~gr~~p---V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (901)
.+++++|||++.+ .+...+...+ .+.+.....+ +...+.. .. ...
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~---------~~--------------------~~~ 351 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIW---------VE--------------------TKQ 351 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEe---------cc--------------------chh
Confidence 8999999999654 5555554333 2333211111 1110000 00 000
Q ss_pred hhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc
Q 046397 232 RKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI 311 (901)
Q Consensus 232 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 311 (901)
. ...+..++... ....+++|||++++..++.+++.|...
T Consensus 352 k-------------------------------------~~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~-- 390 (518)
T PLN00206 352 K-------------------------------------KQKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV-- 390 (518)
T ss_pred H-------------------------------------HHHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc--
Confidence 0 00000111110 122468999999999999999998753
Q ss_pred CCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccccccc
Q 046397 312 LGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIS 391 (901)
Q Consensus 312 ~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iS 391 (901)
..+.+..+||+++.++|..+++.|+.|+.+|||||+++++|||+|+|++||+ ||.+. |
T Consensus 391 ----~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~----------s 448 (518)
T PLN00206 391 ----TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FDMPN----------T 448 (518)
T ss_pred ----cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eCCCC----------C
Confidence 1244778999999999999999999999999999999999999999999999 77655 4
Q ss_pred HhcHHHHhhhcCCCC-CCceEEcCCcchh
Q 046397 392 TVSAQQRRGRAGRVQ-PGECYRLYPRCVY 419 (901)
Q Consensus 392 ka~~~QR~GRAGR~~-~G~c~~L~s~~~~ 419 (901)
..+|.||+|||||.+ +|.++.+++.+..
T Consensus 449 ~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 449 IKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred HHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 456779999999994 7999999987654
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.6e-33 Score=321.32 Aligned_cols=313 Identities=19% Similarity=0.255 Sum_probs=217.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
..+.|.++++.+.+++++++++|||||||+++.+++++.... ....++++++.|+++||.|+.+.+.... ...+..+
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--~~~~~~~lil~Pt~~L~~Q~~~~~~~~~-~~~~~~~ 127 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--DLNACQALILAPTRELAQQIQKVVLALG-DYLKVRC 127 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC--CCCCceEEEECCCHHHHHHHHHHHHHHh-hhcCceE
Confidence 467899999999999999999999999999999998876532 1224567777799999999887664443 2222222
Q ss_pred eEEEec----c--cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEE
Q 046397 90 GYKVRL----E--GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLV 161 (901)
Q Consensus 90 Gy~vr~----e--~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiI 161 (901)
+..+.. + .......+|+|+||+.|.+.+.... .++++++|||||+|+.. ...+ ...+..++. ..++.++|
T Consensus 128 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~-~~~~-~~~~~~i~~~~~~~~~~i 205 (401)
T PTZ00424 128 HACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML-SRGF-KGQIYDVFKKLPPDVQVA 205 (401)
T ss_pred EEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH-hcch-HHHHHHHHhhCCCCcEEE
Confidence 211111 0 1112346899999999999887665 68999999999999621 1122 222333333 44678999
Q ss_pred EeccCCCHHH--HH-hhhCCCcEEeeCCcccc---ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhh
Q 046397 162 LMSATLDAEL--FS-SYFGGATVINIPGFTYP---VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQ 235 (901)
Q Consensus 162 lmSATl~~~~--f~-~yf~~~~~i~i~gr~~p---V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (901)
++|||++.+. +. .|+.++..+.+...... +..+|... ..
T Consensus 206 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~---- 250 (401)
T PTZ00424 206 LFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAV-------------------------------EK---- 250 (401)
T ss_pred EEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEec-------------------------------Ch----
Confidence 9999997642 22 33333322222221100 00110000 00
Q ss_pred hHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC
Q 046397 236 IASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP 315 (901)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 315 (901)
.+.....+..+.......++||||+++.+++.+++.|...+
T Consensus 251 ----------------------------------~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~----- 291 (401)
T PTZ00424 251 ----------------------------------EEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERD----- 291 (401)
T ss_pred ----------------------------------HHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC-----
Confidence 00000112233333455789999999999999999998653
Q ss_pred CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcH
Q 046397 316 TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSA 395 (901)
Q Consensus 316 ~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~ 395 (901)
+.+..+||+|+.++|..+++.|++|+.+|||||+++++|||+|++++||+ ||.+. |..+|
T Consensus 292 --~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~~p~----------s~~~y 351 (401)
T PTZ00424 292 --FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YDLPA----------SPENY 351 (401)
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------ECCCC----------CHHHE
Confidence 34779999999999999999999999999999999999999999999999 66554 44566
Q ss_pred HHHhhhcCCC-CCCceEEcCCcchhhh
Q 046397 396 QQRRGRAGRV-QPGECYRLYPRCVYDA 421 (901)
Q Consensus 396 ~QR~GRAGR~-~~G~c~~L~s~~~~~~ 421 (901)
.||+|||||. ..|.|+.+++++..+.
T Consensus 352 ~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 352 IHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred eecccccccCCCCceEEEEEcHHHHHH
Confidence 6999999998 5899999998876543
No 29
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-33 Score=323.51 Aligned_cols=311 Identities=22% Similarity=0.312 Sum_probs=228.6
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHh-hcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEIT-SVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~-~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
..+.|.+.++.+..++++++.++||||||.++.+++++.+.. ....... .+|+.|||+||.|+++.+...-....+..
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~ 130 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLR 130 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCcc
Confidence 356789999999999999999999999999999999999542 1211111 55556999999999988755433221111
Q ss_pred ee-------EEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397 89 VG-------YKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 89 vG-------y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
+. +..+..... ...+|+|+|||+|++++.... .+.++.++|+||+++ .++..|.-.+-+.+-...++.++
T Consensus 131 ~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr-mLd~Gf~~~i~~I~~~~p~~~qt 208 (513)
T COG0513 131 VAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR-MLDMGFIDDIEKILKALPPDRQT 208 (513)
T ss_pred EEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh-hhcCCCHHHHHHHHHhCCcccEE
Confidence 11 111121122 258999999999999988774 789999999999994 35555554443333334447899
Q ss_pred EEeccCCCHH---HHHhhhCCCcEEeeCCcc-----ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhh
Q 046397 161 VLMSATLDAE---LFSSYFGGATVINIPGFT-----YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKR 232 (901)
Q Consensus 161 IlmSATl~~~---~f~~yf~~~~~i~i~gr~-----~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (901)
+++|||++.. ....|..++..+.+.... -.++.+|+.-
T Consensus 209 llfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v---------------------------------- 254 (513)
T COG0513 209 LLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEV---------------------------------- 254 (513)
T ss_pred EEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEe----------------------------------
Confidence 9999999774 223455544444444111 1222222210
Q ss_pred hhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC
Q 046397 233 KSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL 312 (901)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 312 (901)
-..+....++.+++.....+++|||+++...++.++..|...+
T Consensus 255 -----------------------------------~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g-- 297 (513)
T COG0513 255 -----------------------------------ESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG-- 297 (513)
T ss_pred -----------------------------------CCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC--
Confidence 0000122355666666677789999999999999999999875
Q ss_pred CCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccH
Q 046397 313 GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIST 392 (901)
Q Consensus 313 ~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk 392 (901)
+.+..+||+|++++|.++++.|++|..+|+|||++|++|||||+|.+||+ ||.+.+...|+
T Consensus 298 -----~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD~p~~~e~yv------ 358 (513)
T COG0513 298 -----FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YDLPLDPEDYV------ 358 (513)
T ss_pred -----CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------ccCCCCHHHhe------
Confidence 44779999999999999999999999999999999999999999999999 99888777666
Q ss_pred hcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 393 VSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 393 a~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
||+||+||. ..|.++.+++..
T Consensus 359 ----HRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 359 ----HRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ----eccCccccCCCCCeEEEEeCcH
Confidence 999999999 689999999863
No 30
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.5e-32 Score=325.24 Aligned_cols=424 Identities=22% Similarity=0.244 Sum_probs=279.6
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH--HHhCCccCcEee
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA--SERGEKLGESVG 90 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva--~e~~~~~g~~vG 90 (901)
+|..+-..+.++++++|++|||||||..+.+.|+..+.+. ..++++++|.|+||.+.++.+. +++|.+++...|
T Consensus 36 qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~Tg 111 (766)
T COG1204 36 QQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTG 111 (766)
T ss_pred HHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecC
Confidence 3444444455679999999999999999999999887543 2367777899999999999998 455555554444
Q ss_pred -EEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCc----c-cCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 91 -YKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVH----E-RGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 91 -y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~H----e-R~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
|.... ..-..++|+|+||+.+-..+.+.+ ++..+++|||||+| + ||.-.+ .++.+.....+.+|+|++
T Consensus 112 D~~~~~--~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE---~iv~r~~~~~~~~rivgL 186 (766)
T COG1204 112 DYDLDD--ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE---SIVARMRRLNELIRIVGL 186 (766)
T ss_pred Ccccch--hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh---hHHHHHHhhCcceEEEEE
Confidence 22111 112568999999999988887766 68899999999999 2 555444 445555556677999999
Q ss_pred ccCC-CHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHH
Q 046397 164 SATL-DAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVED 242 (901)
Q Consensus 164 SATl-~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (901)
|||+ |.+.+++|.+..++ ... .+|+..+-- ......-+... + ..+
T Consensus 187 SATlpN~~evA~wL~a~~~-~~~--~rp~~l~~~-v~~~~~~~~~~--------~-------------~~k--------- 232 (766)
T COG1204 187 SATLPNAEEVADWLNAKLV-ESD--WRPVPLRRG-VPYVGAFLGAD--------G-------------KKK--------- 232 (766)
T ss_pred eeecCCHHHHHHHhCCccc-ccC--CCCcccccC-CccceEEEEec--------C-------------ccc---------
Confidence 9999 88999999986554 222 223322100 00000000000 0 000
Q ss_pred HHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHh---C----------
Q 046397 243 TLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA---N---------- 309 (901)
Q Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~---~---------- 309 (901)
..+...+...+..++..+ ..+|++|||++++..+...++.+.. .
T Consensus 233 --------------------~~~~~~~~~~~~~v~~~~---~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~ 289 (766)
T COG1204 233 --------------------TWPLLIDNLALELVLESL---AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVL 289 (766)
T ss_pred --------------------cccccchHHHHHHHHHHH---hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhc
Confidence 000001111111122222 4578999999999999999988873 0
Q ss_pred -----ccCC------------CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcc
Q 046397 310 -----RILG------------DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAK 372 (901)
Q Consensus 310 -----~~~~------------~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k 372 (901)
.... ......+..||++|+.++|..+.+.|+.|.+|||+||++++.|+|.|.-++||- |
T Consensus 290 ~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk-~--- 365 (766)
T COG1204 290 DEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK-D--- 365 (766)
T ss_pred cccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe-e---
Confidence 0010 011235789999999999999999999999999999999999999998888873 3
Q ss_pred ccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcC-Ccch---hhhcccCCCCcccccC------ccchh
Q 046397 373 ETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLY-PRCV---YDAFAEYQLPEILRTP------LQSLC 439 (901)
Q Consensus 373 ~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~-s~~~---~~~l~~~~~PEi~r~~------L~~~~ 439 (901)
...||+..+ .+.+++.++.|+.|||||.+ -|..+.+- +... +........||..... +...+
T Consensus 366 ~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l 440 (766)
T COG1204 366 TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFL 440 (766)
T ss_pred eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheE
Confidence 334776333 24579999999999999994 35444443 2222 1233445556652211 22333
Q ss_pred hhhhccCC----CCHHHHhhhhcCCCh-------HHHHHHHHHHHHHcC-CccCC---CccchhhhhhhcCCCChHHHHH
Q 046397 440 LQIKSLRL----GTIAGFLSRALQSPE-------LLAVQNAIEYLKIIG-ALDHN---EELTVLGQYLAMLPMEPKLGKM 504 (901)
Q Consensus 440 L~~k~l~~----~~~~~fl~~~l~pP~-------~~~v~~al~~L~~~g-ald~~---~~lT~lG~~la~lpl~p~~~k~ 504 (901)
+.+.+.+. .....|+.+++-.|. ...+.+++..|.+.+ .++.. -..|++|+.++++.++|..++.
T Consensus 441 ~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~ 520 (766)
T COG1204 441 LGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKI 520 (766)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHH
Confidence 33333221 134456655555544 456888999999986 55543 3688999999999999999998
Q ss_pred HHHhhhc
Q 046397 505 LILGAIF 511 (901)
Q Consensus 505 ll~~~~~ 511 (901)
+......
T Consensus 521 ~~~~l~~ 527 (766)
T COG1204 521 FRDLLAE 527 (766)
T ss_pred HHHHHHH
Confidence 8766543
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-32 Score=334.33 Aligned_cols=329 Identities=19% Similarity=0.157 Sum_probs=217.9
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
..+++|.+.++.+.+++++++++|||||||.++.+++++.+... ....++++.|+|+||.|+.+++.... ..+..
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAADQLRAVRELT--LRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHHHHHHHHHhc--cCCeE
Confidence 47899999999999999999999999999999999999987642 23467777799999999999986553 11222
Q ss_pred eeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-----CCCCceEEEEecCccc-Ccc---hhHHHHHHHHHHh
Q 046397 89 VGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-----NLKGVTHVIVDEVHER-GMN---EDFLLIVLKDLLS 153 (901)
Q Consensus 89 vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-----~l~~~~~IIIDE~HeR-~~~---~d~ll~~lk~ll~ 153 (901)
++- ...+. ....+++|+++||++|...+.... .++++++|||||+|.. +.. ...++..++.+..
T Consensus 111 v~~-~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~ 189 (742)
T TIGR03817 111 PAT-YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCA 189 (742)
T ss_pred EEE-EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHH
Confidence 211 00111 112357999999999976544321 4789999999999962 221 2223333444433
Q ss_pred hC-CCceEEEeccCC-CHHHHHhhhCCCcEEeeCCccccc---eEEeccchhhhcccccCCCCCCcchhhHHHhHhhccc
Q 046397 154 RR-PELRLVLMSATL-DAELFSSYFGGATVINIPGFTYPV---RTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA 228 (901)
Q Consensus 154 ~~-~~~kiIlmSATl-~~~~f~~yf~~~~~i~i~gr~~pV---~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (901)
.. .+.|+|++|||+ ++..+.+.+.+.|+..+....-|. ...+...... ... .. ...
T Consensus 190 ~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~----~~~-----~~----------~~~ 250 (742)
T TIGR03817 190 RYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLT----ELT-----GE----------NGA 250 (742)
T ss_pred hcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcc----ccc-----cc----------ccc
Confidence 32 467999999999 555555555555554443322221 1111110000 000 00 000
Q ss_pred chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHh
Q 046397 229 PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA 308 (901)
Q Consensus 229 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 308 (901)
.. + .........++..+.. .+.++||||++++.++.++..|..
T Consensus 251 ~~-r----------------------------------~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~ 293 (742)
T TIGR03817 251 PV-R----------------------------------RSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARR 293 (742)
T ss_pred cc-c----------------------------------cchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHH
Confidence 00 0 0000011122333333 257999999999999999998875
Q ss_pred CccC-CCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccc
Q 046397 309 NRIL-GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLP 387 (901)
Q Consensus 309 ~~~~-~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~ 387 (901)
.... .......+..+||++++++|.++++.|++|+.++|||||++|+|||||++++||+ ||.+.
T Consensus 294 ~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~------- 358 (742)
T TIGR03817 294 LLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPG------- 358 (742)
T ss_pred HHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCC-------
Confidence 3110 0111345779999999999999999999999999999999999999999999999 44443
Q ss_pred ccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 388 SWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 388 ~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|.++|+||+|||||. +.|.++.+.+..
T Consensus 359 ---s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 359 ---TRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred ---CHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 456788999999999 568888887643
No 32
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-32 Score=293.39 Aligned_cols=330 Identities=18% Similarity=0.226 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC-C--CeeEEEEecchHHHHHHHHHHHHHHhCC----
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR-G--AVCSIICTQPRRISAMSVSERVASERGE---- 83 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~-~--~~~~IlvtqPrr~la~qva~rva~e~~~---- 83 (901)
.+.|...++.+.++++|++.++||||||.++..++++..+.... . ...-.+++.|||+||.|+.+.+......
T Consensus 30 TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l 109 (567)
T KOG0345|consen 30 TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNL 109 (567)
T ss_pred CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhcc
Confidence 45688999999999999999999999999999999998754322 1 2234556669999999988765443321
Q ss_pred ccCcEeeE-EEec--ccccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCC
Q 046397 84 KLGESVGY-KVRL--EGMKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPE 157 (901)
Q Consensus 84 ~~g~~vGy-~vr~--e~~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~ 157 (901)
..--.||- .++- ......++.|+|+|||.|+.+++... .+.+++++|+|||+ |-++..|-- -+..++...|.
T Consensus 110 ~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~-~~n~ILs~LPK 187 (567)
T KOG0345|consen 110 NCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEA-SVNTILSFLPK 187 (567)
T ss_pred ceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHH-HHHHHHHhccc
Confidence 11122332 1211 11223568899999999999998743 45589999999999 434444433 34555555554
Q ss_pred -ceEEEeccCCCHH--HHHh-hhCCCcEEeeCCcc---cc--ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhccc
Q 046397 158 -LRLVLMSATLDAE--LFSS-YFGGATVINIPGFT---YP--VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA 228 (901)
Q Consensus 158 -~kiIlmSATl~~~--~f~~-yf~~~~~i~i~gr~---~p--V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (901)
-+.=++|||.+.+ .+.. .+.++--+.+.... -| +..+|+.
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v------------------------------- 236 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLV------------------------------- 236 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeE-------------------------------
Confidence 4577899998543 3332 23343333333211 11 2222211
Q ss_pred chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHh
Q 046397 229 PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA 308 (901)
Q Consensus 229 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 308 (901)
+..+.....+.++..+...+++|||+|+...++.....+..
T Consensus 237 ---------------------------------------~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~ 277 (567)
T KOG0345|consen 237 ---------------------------------------CEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSR 277 (567)
T ss_pred ---------------------------------------ecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHH
Confidence 11112222345666667789999999999999998888876
Q ss_pred CccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccc
Q 046397 309 NRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPS 388 (901)
Q Consensus 309 ~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~ 388 (901)
. .....++.+||.|...+|.++++.|......+++||++|++|||||+|++||+ ||||...+.++
T Consensus 278 ~-----l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~Fv-- 342 (567)
T KOG0345|consen 278 L-----LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSSFV-- 342 (567)
T ss_pred H-----hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cCCCCChhHHH--
Confidence 5 12355889999999999999999999988899999999999999999999999 99999887766
Q ss_pred cccHhcHHHHhhhcCCC-CCCceEEcC--Ccchhhh-cccCCCCcccccCc
Q 046397 389 WISTVSAQQRRGRAGRV-QPGECYRLY--PRCVYDA-FAEYQLPEILRTPL 435 (901)
Q Consensus 389 ~iSka~~~QR~GRAGR~-~~G~c~~L~--s~~~~~~-l~~~~~PEi~r~~L 435 (901)
||+||+||. +.|..+.+. .+..|.+ |.-...|++-+...
T Consensus 343 --------HR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 343 --------HRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred --------hhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 999999998 567665554 4456666 44455676555433
No 33
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.4e-32 Score=296.44 Aligned_cols=431 Identities=20% Similarity=0.265 Sum_probs=297.2
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecc---
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLE--- 96 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e--- 96 (901)
-+.++.+.+|+.+|+||||+..-+.=+..++.. | .+.+++.|-.+||.|-++.|.... .++|-.|..+|...
T Consensus 228 GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g--~KmlfLvPLVALANQKy~dF~~rY-s~LglkvairVG~srIk 302 (830)
T COG1202 228 GLLEGENLLVVSATASGKTLIGELAGIPRLLSG--G--KKMLFLVPLVALANQKYEDFKERY-SKLGLKVAIRVGMSRIK 302 (830)
T ss_pred ccccCCceEEEeccCCCcchHHHhhCcHHHHhC--C--CeEEEEehhHHhhcchHHHHHHHh-hcccceEEEEechhhhc
Confidence 367899999999999999988777655555532 2 256666799999999999997776 56666555444221
Q ss_pred -------cccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCc-----ccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 97 -------GMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVH-----ERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 97 -------~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~H-----eR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
...+.+.+|+|+|.+-+--.|.....+.+++.|||||+| |||..-|-+...|+. ..|+.|+|.+|
T Consensus 303 ~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~---l~~~AQ~i~LS 379 (830)
T COG1202 303 TREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY---LFPGAQFIYLS 379 (830)
T ss_pred ccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHH---hCCCCeEEEEE
Confidence 223467899999999888888888899999999999999 789888877777665 46799999999
Q ss_pred cCC-CHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHH
Q 046397 165 ATL-DAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDT 243 (901)
Q Consensus 165 ATl-~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 243 (901)
||+ |++.++++++ +..+...+|+.|++.|.+-. +....+.+-+...++..
T Consensus 380 ATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~----------------------------~~e~eK~~ii~~L~k~E 430 (830)
T COG1202 380 ATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFA----------------------------RNESEKWDIIARLVKRE 430 (830)
T ss_pred eecCChHHHHHHhC-CeeEeecCCCCChhHeeeee----------------------------cCchHHHHHHHHHHHHH
Confidence 999 8999999986 56677788888887764310 00000111112222221
Q ss_pred HHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEe
Q 046397 244 LKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTC 323 (901)
Q Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~l 323 (901)
.. ......-.|++|||..++..++.+++.|...++... |+
T Consensus 431 ~~---------------------------------~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~-------pY 470 (830)
T COG1202 431 FS---------------------------------TESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAA-------PY 470 (830)
T ss_pred Hh---------------------------------hhhccCcCCceEEEecchhhHHHHHHHhhcCCcccc-------cc
Confidence 11 111224479999999999999999999998766544 99
Q ss_pred cCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcC
Q 046397 324 HGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAG 403 (901)
Q Consensus 324 hs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAG 403 (901)
|++|+..+|+.+...|.++...+||+|-.++.|+|+|.-.+|.++ -.+-..|+|..+|.||.||||
T Consensus 471 HaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------LaMG~~WLs~~EF~QM~GRAG 536 (830)
T COG1202 471 HAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------LAMGIEWLSVREFQQMLGRAG 536 (830)
T ss_pred cCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------HHcccccCCHHHHHHHhcccC
Confidence 999999999999999999999999999999999999977766541 123357999999999999999
Q ss_pred CC---CCCceEEcCCcc-hhhh-ccc----------CCCCcccccCc-----cchhhhhhccCCCC----HHHHhhhhcC
Q 046397 404 RV---QPGECYRLYPRC-VYDA-FAE----------YQLPEILRTPL-----QSLCLQIKSLRLGT----IAGFLSRALQ 459 (901)
Q Consensus 404 R~---~~G~c~~L~s~~-~~~~-l~~----------~~~PEi~r~~L-----~~~~L~~k~l~~~~----~~~fl~~~l~ 459 (901)
|. ..|++|.|.... .|.. |.+ ...||-.-..- .+-+|. +.++.+ +...-+..+-
T Consensus 537 Rp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g 614 (830)
T COG1202 537 RPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLG 614 (830)
T ss_pred CCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhcc
Confidence 99 468999885322 2221 111 11222211111 111222 112211 1111000110
Q ss_pred CChHHHHHHHHHHHHHcCCccCCC---ccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhc-CCCCccCCCC
Q 046397 460 SPELLAVQNAIEYLKIIGALDHNE---ELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLS-VRDPFLAPMD 535 (901)
Q Consensus 460 pP~~~~v~~al~~L~~~gald~~~---~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls-~~~~f~~p~~ 535 (901)
..-....+++.|++.|.|+.+| ++|+.|++++..-+.|.-+-.|..+. ..--+|. .|++.|. +.+.++.++-
T Consensus 615 --~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~pl-~i~~~l~pfE~ayls~~l 690 (830)
T COG1202 615 --AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDPL-RIAAELEPFENAYLSGFL 690 (830)
T ss_pred --ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCChH-hHhhccccccccccChHH
Confidence 0123578899999999999886 69999999999999999998887775 3444554 4555554 3344444433
Q ss_pred hHHHHHHHHhhc
Q 046397 536 KKDLAEAAKSQF 547 (901)
Q Consensus 536 ~~~~~~~~~~~f 547 (901)
++......+..+
T Consensus 691 ~r~i~~~~~~~v 702 (830)
T COG1202 691 KRAIESALRGRV 702 (830)
T ss_pred HHHHHHHhcCCC
Confidence 444444444433
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-31 Score=312.98 Aligned_cols=307 Identities=21% Similarity=0.203 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVG 90 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vG 90 (901)
.++|.++++++.+++++++++|||+|||+.+.++++.. +. ..+|+.|+++|+.+..+++.. .|.......|
T Consensus 13 r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~--~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~ 83 (470)
T TIGR00614 13 RPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DG--ITLVISPLISLMEDQVLQLKA-SGIPATFLNS 83 (470)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CC--cEEEEecHHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 56899999999999999999999999998887776642 12 345555999999998888853 2322111111
Q ss_pred EEEe------cccccCCCceEEEEcHHHHHHHH--hcCC-CCCCceEEEEecCcccCc-chhHHHH--HHHHHHhhCCCc
Q 046397 91 YKVR------LEGMKGRDTRLLFCTTGILLRRL--LVDR-NLKGVTHVIVDEVHERGM-NEDFLLI--VLKDLLSRRPEL 158 (901)
Q Consensus 91 y~vr------~e~~~~~~t~Ii~~T~g~Llr~L--~~~~-~l~~~~~IIIDE~HeR~~-~~d~ll~--~lk~ll~~~~~~ 158 (901)
.... .........+|+|+||+.+.... ...- ...++++|||||||...- ..+|... .+..+....|+.
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 163 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNV 163 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCC
Confidence 0000 00112345789999999875321 1111 467899999999996421 1233222 234455567899
Q ss_pred eEEEeccCCCHHHH---HhhhC-CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 159 RLVLMSATLDAELF---SSYFG-GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 159 kiIlmSATl~~~~f---~~yf~-~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
+++++|||++.... .+.++ ..+.+...+...|.-.+.+.. +
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~--------------------------------~--- 208 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRR--------------------------------K--- 208 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEe--------------------------------C---
Confidence 99999999987543 33333 122222221111110000000 0
Q ss_pred hhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC
Q 046397 235 QIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD 314 (901)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 314 (901)
..+.+.+++..+........+||||+++++++.+++.|...+.
T Consensus 209 ----------------------------------~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~--- 251 (470)
T TIGR00614 209 ----------------------------------TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGI--- 251 (470)
T ss_pred ----------------------------------CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCC---
Confidence 0011222333333334455679999999999999999987643
Q ss_pred CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhc
Q 046397 315 PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVS 394 (901)
Q Consensus 315 ~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~ 394 (901)
.+..+||+|+.++|.++++.|..|..+|||||+++++|||+|+|++||+ ||++. |..+
T Consensus 252 ----~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~~P~----------s~~~ 309 (470)
T TIGR00614 252 ----AAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YSLPK----------SMES 309 (470)
T ss_pred ----CeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE--------eCCCC----------CHHH
Confidence 3668999999999999999999999999999999999999999999999 55554 4456
Q ss_pred HHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 395 AQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 395 ~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
|.||+|||||. .+|.|+.+|+..+..
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHHH
Confidence 77999999999 589999999886554
No 35
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.98 E-value=5.2e-31 Score=288.33 Aligned_cols=380 Identities=18% Similarity=0.193 Sum_probs=251.1
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+-...||..+......+ +++|+.|||-|||+.+...+...+-.. + . +++++.||+-|+.|.++.+.+.++.+..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~--~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF--G-G-KVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc--C-C-eEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 345667899888887765 779999999999999888887765322 1 2 7999999999999999999999988766
Q ss_pred cEeeEE--Eeccc--ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 87 ESVGYK--VRLEG--MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 87 ~~vGy~--vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
+.+... ++-+. ......+|+|+||+++.+.|.... ++.+++|||+|||| |....-.+..+.+..+....++.++
T Consensus 88 ~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~il 166 (542)
T COG1111 88 EIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLIL 166 (542)
T ss_pred heeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEE
Confidence 554432 11111 112457899999999999998877 89999999999999 6666666777788888888999999
Q ss_pred EeccCC--CHHHHHhhhCCCcEEeeCCc----------cccceEEecc--------chhhh--------------ccccc
Q 046397 162 LMSATL--DAELFSSYFGGATVINIPGF----------TYPVRTHFLE--------DILDM--------------TGYRL 207 (901)
Q Consensus 162 lmSATl--~~~~f~~yf~~~~~i~i~gr----------~~pV~~~~l~--------d~~~~--------------~~~~~ 207 (901)
+||||+ +.+.+.+-..+-.+-+|.-+ ...++..+++ ++.+. .|+..
T Consensus 167 gLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~ 246 (542)
T COG1111 167 GLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIE 246 (542)
T ss_pred EEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 999998 55666655543222222111 1223333321 11000 11111
Q ss_pred CCCCCCcchhhHHHhHhh---c---ccchhhhhh-------------------------hHHHHHHHHHhhcccccchhh
Q 046397 208 TPYNQIDDYGQEKMWKMS---K---QAPRKRKSQ-------------------------IASAVEDTLKAANFNEYSSQT 256 (901)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~-------------------------~~~~i~~~l~~~~~~~~~~~~ 256 (901)
...+ +. ........ . ........+ ....+++.-+.... .-+...
T Consensus 247 ~~~~-~~---~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~-~~sk~a 321 (542)
T COG1111 247 SSSP-VS---KKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK-GGSKAA 321 (542)
T ss_pred ccCc-cc---HhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc-cchHHH
Confidence 1110 00 00011000 0 000000000 00111111111111 000000
Q ss_pred ---------------hhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEE
Q 046397 257 ---------------RESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLL 321 (901)
Q Consensus 257 ---------------~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~ 321 (901)
.........+....+.+..++....+..++.++|||..-+++++.+.+.|...+.... ...|.
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~--~rFiG 399 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR--VRFIG 399 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce--eEEee
Confidence 0011223334455666777777777777889999999999999999999998754321 01111
Q ss_pred ----EecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHH
Q 046397 322 ----TCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQ 397 (901)
Q Consensus 322 ----~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 397 (901)
-...||++.+|.++++.|++|+.+|+|||+|+|.|+|||+|++||- |+|..+.- -+.|
T Consensus 400 Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvpSeI----------R~IQ 461 (542)
T COG1111 400 QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVPSEI----------RSIQ 461 (542)
T ss_pred ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCcHHH----------HHHH
Confidence 1235899999999999999999999999999999999999999998 88865443 4559
Q ss_pred HhhhcCCCCCCceEEcCCcc
Q 046397 398 RRGRAGRVQPGECYRLYPRC 417 (901)
Q Consensus 398 R~GRAGR~~~G~c~~L~s~~ 417 (901)
|+||+||.++|..|.|+++.
T Consensus 462 R~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 462 RKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred hhCccccCCCCeEEEEEecC
Confidence 99999999999999999876
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.98 E-value=3.1e-31 Score=316.94 Aligned_cols=306 Identities=20% Similarity=0.249 Sum_probs=209.6
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
..+.|.++++++.+++++++++|||+|||+.+.++++.. .+ .++|+.|+++|+.+..+.+.. .|.......
T Consensus 26 ~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----~g---~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~ 96 (607)
T PRK11057 26 FRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----DG---LTLVVSPLISLMKDQVDQLLA-NGVAAACLN 96 (607)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----CC---CEEEEecHHHHHHHHHHHHHH-cCCcEEEEc
Confidence 347899999999999999999999999999877776632 11 355566999999998888753 232211110
Q ss_pred eEEE------ecccccCCCceEEEEcHHHHHHH-HhcCCCCCCceEEEEecCcccCcc-hhHH--HHHHHHHHhhCCCce
Q 046397 90 GYKV------RLEGMKGRDTRLLFCTTGILLRR-LLVDRNLKGVTHVIVDEVHERGMN-EDFL--LIVLKDLLSRRPELR 159 (901)
Q Consensus 90 Gy~v------r~e~~~~~~t~Ii~~T~g~Llr~-L~~~~~l~~~~~IIIDE~HeR~~~-~d~l--l~~lk~ll~~~~~~k 159 (901)
+-.. .+........+|+|+||+.|... +.......++++|||||||...-. .||. ...+..+....|+.+
T Consensus 97 s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~ 176 (607)
T PRK11057 97 STQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLP 176 (607)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCc
Confidence 1000 01112234578999999988742 222223457899999999964322 2222 233455556678999
Q ss_pred EEEeccCCCHHHHH---hhhC-CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhh
Q 046397 160 LVLMSATLDAELFS---SYFG-GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQ 235 (901)
Q Consensus 160 iIlmSATl~~~~f~---~yf~-~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (901)
+++||||++..... ..++ ..|.+.+.....|.-.+.+.+
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~------------------------------------- 219 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVE------------------------------------- 219 (607)
T ss_pred EEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeee-------------------------------------
Confidence 99999999765433 3322 233333332221110000000
Q ss_pred hHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC
Q 046397 236 IASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP 315 (901)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 315 (901)
....+..++.. .....++++||||+++++++.+++.|...+.
T Consensus 220 ---------------------------------~~~~~~~l~~~-l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~---- 261 (607)
T PRK11057 220 ---------------------------------KFKPLDQLMRY-VQEQRGKSGIIYCNSRAKVEDTAARLQSRGI---- 261 (607)
T ss_pred ---------------------------------ccchHHHHHHH-HHhcCCCCEEEEECcHHHHHHHHHHHHhCCC----
Confidence 00001112222 2234567899999999999999999987643
Q ss_pred CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcH
Q 046397 316 TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSA 395 (901)
Q Consensus 316 ~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~ 395 (901)
.+.++||+|+.++|.++++.|..|..+|||||+++++|||+|+|++||+ ||.+. |..+|
T Consensus 262 ---~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d~P~----------s~~~y 320 (607)
T PRK11057 262 ---SAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPR----------NIESY 320 (607)
T ss_pred ---CEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eCCCC----------CHHHH
Confidence 4679999999999999999999999999999999999999999999999 66554 45577
Q ss_pred HHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 396 QQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 396 ~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
.||+|||||. .+|.|+.+|+..+..
T Consensus 321 ~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 321 YQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred HHHhhhccCCCCCceEEEEeCHHHHH
Confidence 7999999999 479999999986653
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.98 E-value=3e-31 Score=327.79 Aligned_cols=387 Identities=20% Similarity=0.201 Sum_probs=238.3
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC----CCeeEEEEecchHHHHHHHHHHHHH------
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR----GAVCSIICTQPRRISAMSVSERVAS------ 79 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~----~~~~~IlvtqPrr~la~qva~rva~------ 79 (901)
.++.|.++++.+.++++++|++|||||||.++.+++++.+..... ...+.++++.|+|+||.|+.+++.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999988764321 2345677778999999999886542
Q ss_pred ----HhCCcc-CcEeeEEEeccc--------ccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccC--cch
Q 046397 80 ----ERGEKL-GESVGYKVRLEG--------MKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERG--MNE 141 (901)
Q Consensus 80 ----e~~~~~-g~~vGy~vr~e~--------~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~--~~~ 141 (901)
..|..+ +..++ ++... .....++|+++||+.|...+.+.. .+.++++|||||+|+-. ...
T Consensus 113 ~~~~~~g~~~~~i~v~--v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG 190 (876)
T PRK13767 113 EIAKERGEELPEIRVA--IRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRG 190 (876)
T ss_pred HHHHhcCCCcCCeeEE--EEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccH
Confidence 123333 22222 21111 112357899999999976664432 47899999999999621 111
Q ss_pred hHHHHHHHHHHhhC-CCceEEEeccCC-CHHHHHhhhCCCc-------EEeeCCcc-ccceEEeccchhhhcccccCCCC
Q 046397 142 DFLLIVLKDLLSRR-PELRLVLMSATL-DAELFSSYFGGAT-------VINIPGFT-YPVRTHFLEDILDMTGYRLTPYN 211 (901)
Q Consensus 142 d~ll~~lk~ll~~~-~~~kiIlmSATl-~~~~f~~yf~~~~-------~i~i~gr~-~pV~~~~l~d~~~~~~~~~~~~~ 211 (901)
..+...+.++.... ++.++|++|||+ +.+.+.+|+.+.. +..+.... .+....... +..
T Consensus 191 ~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~-----------p~~ 259 (876)
T PRK13767 191 VHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS-----------PVD 259 (876)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec-----------cCc
Confidence 22233334443333 578999999999 5577888876531 11111100 000000000 000
Q ss_pred CCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEE
Q 046397 212 QIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLV 291 (901)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLV 291 (901)
.... .. ....... +...+..+.. ..+++||
T Consensus 260 ~l~~-----------~~------------------------------------~~~~~~~-l~~~L~~~i~--~~~~~LV 289 (876)
T PRK13767 260 DLIH-----------TP------------------------------------AEEISEA-LYETLHELIK--EHRTTLI 289 (876)
T ss_pred cccc-----------cc------------------------------------cchhHHH-HHHHHHHHHh--cCCCEEE
Confidence 0000 00 0000000 1111222222 3578999
Q ss_pred EcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCc
Q 046397 292 FMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKA 371 (901)
Q Consensus 292 Fl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~ 371 (901)
||+++..++.++..|....... .....+..+||+|+.++|..+++.|++|..+|||||+++++|||||+|++||+
T Consensus 290 F~nTr~~ae~la~~L~~~~~~~-~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~---- 364 (876)
T PRK13767 290 FTNTRSGAERVLYNLRKRFPEE-YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL---- 364 (876)
T ss_pred EeCCHHHHHHHHHHHHHhchhh-ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----
Confidence 9999999999999997632110 12245889999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCccccccccccHhcHHHHhhhcCCC----CCCceEEcCCcchhh------hcccCCC--CcccccCccchh
Q 046397 372 KETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV----QPGECYRLYPRCVYD------AFAEYQL--PEILRTPLQSLC 439 (901)
Q Consensus 372 k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~----~~G~c~~L~s~~~~~------~l~~~~~--PEi~r~~L~~~~ 439 (901)
|+.+. |.++|.||+|||||. ..|.++.+-..+..+ ...+..+ +.+...+++-++
T Consensus 365 ----~~~P~----------sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 365 ----LGSPK----------SVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred ----eCCCC----------CHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 55543 456777999999986 246666643322111 1111111 122233454445
Q ss_pred hhhhccC------CCCHHHHhhhhc--CCChHHHHHHHHHHHHHcCC
Q 046397 440 LQIKSLR------LGTIAGFLSRAL--QSPELLAVQNAIEYLKIIGA 478 (901)
Q Consensus 440 L~~k~l~------~~~~~~fl~~~l--~pP~~~~v~~al~~L~~~ga 478 (901)
-++.++- .+++.+++.++. .--+.+.++..++.|..-++
T Consensus 431 q~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 477 (876)
T PRK13767 431 QHIVGMAIERPWDIEEAYNIVRRAYPYRDLSDEDFESVLRYLAGDYG 477 (876)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhccCCcccCCHHHHHHHHHHHhccCc
Confidence 4544432 223344443322 11244678888999976643
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=9.5e-31 Score=314.72 Aligned_cols=308 Identities=19% Similarity=0.177 Sum_probs=204.5
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
..+.|.++++++..++++++.+|||+|||.++.++++.. + +..+|+.|+++|+.+....+.. .+.......
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~--GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~ 531 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------P--GITLVISPLVSLIQDQIMNLLQ-ANIPAASLS 531 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------C--CcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEE
Confidence 346799999999999999999999999999888887742 1 2455666999999754444422 122111111
Q ss_pred eEEE---e---cccc--cCCCceEEEEcHHHHH------HHHhcCCCCCCceEEEEecCcccC-cchhHHHHH--HHHHH
Q 046397 90 GYKV---R---LEGM--KGRDTRLLFCTTGILL------RRLLVDRNLKGVTHVIVDEVHERG-MNEDFLLIV--LKDLL 152 (901)
Q Consensus 90 Gy~v---r---~e~~--~~~~t~Ii~~T~g~Ll------r~L~~~~~l~~~~~IIIDE~HeR~-~~~d~ll~~--lk~ll 152 (901)
|... . +... .....+|+|+||+.|. +.+..-.....+++|||||||.-. ...||-..+ +..+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 1000 0 0001 1145799999999875 222222234558899999999632 223443332 23345
Q ss_pred hhCCCceEEEeccCCCHH---HHHhhhCCC-cEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhccc
Q 046397 153 SRRPELRLVLMSATLDAE---LFSSYFGGA-TVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA 228 (901)
Q Consensus 153 ~~~~~~kiIlmSATl~~~---~f~~yf~~~-~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (901)
...|+.+++++|||++.. .+.+.++.. +.+...++..|- .+|.- .+
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpN-L~y~V----------v~------------------- 661 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPN-LWYSV----------VP------------------- 661 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccc-eEEEE----------ec-------------------
Confidence 567888999999999765 344444422 222222221111 11100 00
Q ss_pred chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHh
Q 046397 229 PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA 308 (901)
Q Consensus 229 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 308 (901)
+. . ..+..+...+.....++..||||.++.+++.+++.|..
T Consensus 662 --k~-k------------------------------------k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~ 702 (1195)
T PLN03137 662 --KT-K------------------------------------KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQE 702 (1195)
T ss_pred --cc-h------------------------------------hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHH
Confidence 00 0 00011122222233456789999999999999999987
Q ss_pred CccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccc
Q 046397 309 NRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPS 388 (901)
Q Consensus 309 ~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~ 388 (901)
.++ .+.++||+|++++|..+++.|..|+.+|||||+++++|||+|+|++||+ ||.+.++
T Consensus 703 ~Gi-------ka~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------ydlPkSi------ 761 (1195)
T PLN03137 703 FGH-------KAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HSLPKSI------ 761 (1195)
T ss_pred CCC-------CeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cCCCCCH------
Confidence 644 3679999999999999999999999999999999999999999999999 5555544
Q ss_pred cccHhcHHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 389 WISTVSAQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 389 ~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
.+|.||+|||||. .+|.|+.+|+..++.
T Consensus 762 ----EsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 762 ----EGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ----HHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 4566999999999 589999999876664
No 39
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=5.6e-31 Score=285.73 Aligned_cols=317 Identities=18% Similarity=0.227 Sum_probs=221.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC--CeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG--AVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~--~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
+...|+..+..+..++++++.|-||+|||.+++++..+..+..... ....++++.|||+||+|++....+.+...-+.
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCc
Confidence 4567888999999999999999999999999999999988753221 22344555599999999998887777655566
Q ss_pred EeeEEEeccccc------CCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCc
Q 046397 88 SVGYKVRLEGMK------GRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PEL 158 (901)
Q Consensus 88 ~vGy~vr~e~~~------~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~ 158 (901)
.||+-+...+.. ...+.|+|+|||.|+.+|++.+ ...+..++|+|||+ |-++..|-.. +..++... ...
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~d-i~~Ii~~lpk~r 262 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEED-VEQIIKILPKQR 262 (543)
T ss_pred ceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHH-HHHHHHhccccc
Confidence 677766554322 2478999999999999999877 46677899999999 3333333333 33444433 456
Q ss_pred eEEEeccCCCHH--HHHhh-hC-CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 159 RLVLMSATLDAE--LFSSY-FG-GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 159 kiIlmSATl~~~--~f~~y-f~-~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
|-.++|||.+.+ .++.- +. ++..+.+....-+....-++. +|..
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Q-----gyvv--------------------------- 310 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQ-----GYVV--------------------------- 310 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccc-----eEEe---------------------------
Confidence 899999999765 22211 11 111111111110000000000 0000
Q ss_pred hhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC
Q 046397 235 QIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD 314 (901)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 314 (901)
.+..-.+. .+...+.++....+|+|||++...+..+++.|...
T Consensus 311 -----------------------------~~~~~~f~---ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~----- 353 (543)
T KOG0342|consen 311 -----------------------------APSDSRFS---LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI----- 353 (543)
T ss_pred -----------------------------ccccchHH---HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc-----
Confidence 00000111 12223333334489999999999999999999854
Q ss_pred CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhc
Q 046397 315 PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVS 394 (901)
Q Consensus 315 ~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~ 394 (901)
++.|.-+||++++..|..+|..|.+.+.-|+||||++++|+|+|+|++||. ||+|.+.. +
T Consensus 354 --dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~~P~d~~----------~ 413 (543)
T KOG0342|consen 354 --DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YDPPSDPE----------Q 413 (543)
T ss_pred --CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE--------eCCCCCHH----------H
Confidence 344778999999999999999999999999999999999999999999999 77776554 5
Q ss_pred HHHHhhhcCCC-CCCceEEcCCcc
Q 046397 395 AQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 395 ~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|+||.||+||. +.|..+.+..++
T Consensus 414 YIHRvGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 414 YIHRVGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred HHHHhccccccCCCceEEEEeChh
Confidence 66999999998 578888876654
No 40
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=285.18 Aligned_cols=317 Identities=18% Similarity=0.264 Sum_probs=229.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCC--eeEEEEecchHHHHHHHHHHHHHH---hCCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGA--VCSIICTQPRRISAMSVSERVASE---RGEK 84 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~--~~~IlvtqPrr~la~qva~rva~e---~~~~ 84 (901)
+.+.|.+.+.....+++|+-.+.||||||+++..++++.++..+.+. ..-.+++.|||+||.|+.+.+.+. .+..
T Consensus 92 ~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fS 171 (758)
T KOG0343|consen 92 MTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFS 171 (758)
T ss_pred HHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccc
Confidence 45678888999999999999999999999999999999998755422 122333449999999998766432 2333
Q ss_pred cCcEee-EEEecccccCCCceEEEEcHHHHHHHHhcCCC--CCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceE
Q 046397 85 LGESVG-YKVRLEGMKGRDTRLLFCTTGILLRRLLVDRN--LKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRL 160 (901)
Q Consensus 85 ~g~~vG-y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~--l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~ki 160 (901)
.|-.+| -.+.++...-.+.+|+|||||.||++|...+. -.++.++|+|||+ |-++..|- ..|..++...| .-|.
T Consensus 172 aGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk-~tL~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 172 AGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFK-KTLNAIIENLPKKRQT 249 (758)
T ss_pred cceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHH-HHHHHHHHhCChhhee
Confidence 343333 22334444445789999999999999998884 5678899999999 54555543 34555555444 5689
Q ss_pred EEeccCCC--HHHHHhh-hCCCcEEeeCCcc---cc--ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhh
Q 046397 161 VLMSATLD--AELFSSY-FGGATVINIPGFT---YP--VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKR 232 (901)
Q Consensus 161 IlmSATl~--~~~f~~y-f~~~~~i~i~gr~---~p--V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (901)
+++|||.. ...+++. +.++..+.+.... .| +..+|+.
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~----------------------------------- 294 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVI----------------------------------- 294 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEE-----------------------------------
Confidence 99999973 3455544 2233333332110 01 1111110
Q ss_pred hhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC
Q 046397 233 KSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL 312 (901)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 312 (901)
+.......++..........++|||+.+..++..+++.+....
T Consensus 295 -----------------------------------v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr-- 337 (758)
T KOG0343|consen 295 -----------------------------------VPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR-- 337 (758)
T ss_pred -----------------------------------EehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC--
Confidence 0001111233444455677899999999999999999998763
Q ss_pred CCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccH
Q 046397 313 GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIST 392 (901)
Q Consensus 313 ~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk 392 (901)
....++.|||.|++..|-.++..|-...--|++||+++++|+|+|.|++||. ||-|.+..+|+
T Consensus 338 ---pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~DCPedv~tYI------ 400 (758)
T KOG0343|consen 338 ---PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VDCPEDVDTYI------ 400 (758)
T ss_pred ---CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ecCchhHHHHH------
Confidence 2345889999999999999999999888899999999999999999999998 88877776555
Q ss_pred hcHHHHhhhcCCC-CCCceEEcCCcchhhh
Q 046397 393 VSAQQRRGRAGRV-QPGECYRLYPRCVYDA 421 (901)
Q Consensus 393 a~~~QR~GRAGR~-~~G~c~~L~s~~~~~~ 421 (901)
||+||+.|. ..|.|+.+.+....+.
T Consensus 401 ----HRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 401 ----HRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred ----HHhhhhhcccCCCceEEEEcchhHHH
Confidence 999999999 6799999988766443
No 41
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=7e-30 Score=294.99 Aligned_cols=386 Identities=20% Similarity=0.253 Sum_probs=229.1
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 6 RNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 6 ~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
..+|+..||.++..... ++++||++|||+|||..+...++++.-. -+..+|++++|++-|+.|....+ ..++...
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw---~p~~KiVF~aP~~pLv~QQ~a~~-~~~~~~~ 133 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW---RPKGKVVFLAPTRPLVNQQIACF-SIYLIPY 133 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc---CCcceEEEeeCCchHHHHHHHHH-hhccCcc
Confidence 57899999999999999 9999999999999998888888777632 23468999999999999987444 3333221
Q ss_pred CcEeeEEEe---cc--cccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCC-
Q 046397 86 GESVGYKVR---LE--GMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPE- 157 (901)
Q Consensus 86 g~~vGy~vr---~e--~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~- 157 (901)
...|..-. -. ...-...+|+|+||++|.+.|.+.. .|+.++++|||||| |....-.+-.+++.++.....
T Consensus 134 -~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 134 -SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred -cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcc
Confidence 11111000 00 0111357999999999999987653 47899999999999 555555666667666665443
Q ss_pred ceEEEeccCCC--HHHHHhhhCC-CcEEeeCC--------------ccccceEEe----ccc--------hhhhcc-ccc
Q 046397 158 LRLVLMSATLD--AELFSSYFGG-ATVINIPG--------------FTYPVRTHF----LED--------ILDMTG-YRL 207 (901)
Q Consensus 158 ~kiIlmSATl~--~~~f~~yf~~-~~~i~i~g--------------r~~pV~~~~----l~d--------~~~~~~-~~~ 207 (901)
.|||++|||+. -+...++..+ |-.+.+.. ...|+.... .++ ++.... ..+
T Consensus 212 ~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l 291 (746)
T KOG0354|consen 212 NQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGL 291 (746)
T ss_pred ccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 49999999983 3445555442 11111111 112332000 000 000000 000
Q ss_pred CCCCCCc-chhhHHHhHhhcccc---hhhh-----hhhHH---------HHH--HHHHh-hcc------cccchh-----
Q 046397 208 TPYNQID-DYGQEKMWKMSKQAP---RKRK-----SQIAS---------AVE--DTLKA-ANF------NEYSSQ----- 255 (901)
Q Consensus 208 ~~~~~~~-~~~~~~~~~~~~~~~---~~~~-----~~~~~---------~i~--~~l~~-~~~------~~~~~~----- 255 (901)
.+..... .|....+.......+ .... ..... .+. +++.. .++ ..+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0000000 000000000000000 0000 00000 000 00000 000 000000
Q ss_pred ----------hhhhcccCCC-CCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEec
Q 046397 256 ----------TRESLSCWNP-DCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCH 324 (901)
Q Consensus 256 ----------~~~~l~~~~~-~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lh 324 (901)
..+.++.-.+ ....+..+.+.+.......+..++|||+.+++.+..+...|...-..+-.....|..-+
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 0000110001 12223333444444445667889999999999999999999852111112223333333
Q ss_pred ----CCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 325 ----GSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 325 ----s~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
.+|++.+|+++++.|+.|+.+|||||+|+|+|+||+.|+.||- ||..++...++ ||+|
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpIrmI----------QrrG 513 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPIRMV----------QRRG 513 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccHHHHH----------HHhc
Confidence 3799999999999999999999999999999999999999998 98888766555 9999
Q ss_pred hcCCCCCCceEEcCCcc
Q 046397 401 RAGRVQPGECYRLYPRC 417 (901)
Q Consensus 401 RAGR~~~G~c~~L~s~~ 417 (901)
| ||.+.|+|+.|++..
T Consensus 514 R-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 514 R-GRARNSKCVLLTTGS 529 (746)
T ss_pred c-ccccCCeEEEEEcch
Confidence 9 999999999999943
No 42
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=281.07 Aligned_cols=318 Identities=20% Similarity=0.241 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-CeeEEEEecchHHHHHHHHHHH---HHHhCCccCc
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG-AVCSIICTQPRRISAMSVSERV---ASERGEKLGE 87 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~~~~IlvtqPrr~la~qva~rv---a~e~~~~~g~ 87 (901)
+.|.+.++...-+++++.++.||||||.++.+++|++++-+.++ ...+|+|+.|||+||+|++... ++.....+|-
T Consensus 206 pIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L 285 (691)
T KOG0338|consen 206 PIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGL 285 (691)
T ss_pred chhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeee
Confidence 35778888888999999999999999999999999998865544 3457888889999999987644 3444433333
Q ss_pred Eee-EEEec-ccccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEE
Q 046397 88 SVG-YKVRL-EGMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVL 162 (901)
Q Consensus 88 ~vG-y~vr~-e~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIl 162 (901)
.|| ..++. +......++|+++|||.|..+|.+.+ .++++.++|+||++ | +..+.+..-+..+++..| +-|.+|
T Consensus 286 ~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-R-MLeegFademnEii~lcpk~RQTmL 363 (691)
T KOG0338|consen 286 AVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-R-MLEEGFADEMNEIIRLCPKNRQTML 363 (691)
T ss_pred eecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-H-HHHHHHHHHHHHHHHhcccccccee
Confidence 333 22221 11223568999999999999999988 78999999999999 4 455556666778877665 567999
Q ss_pred eccCCCHH--HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 163 MSATLDAE--LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 163 mSATl~~~--~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
+|||+..+ .+.+.--+ .||.++.-+.- .... ..-
T Consensus 364 FSATMteeVkdL~slSL~----------kPvrifvd~~~------------~~a~----------------------~Lt 399 (691)
T KOG0338|consen 364 FSATMTEEVKDLASLSLN----------KPVRIFVDPNK------------DTAP----------------------KLT 399 (691)
T ss_pred ehhhhHHHHHHHHHhhcC----------CCeEEEeCCcc------------ccch----------------------hhh
Confidence 99999654 33332111 24444321100 0000 000
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL 320 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v 320 (901)
++.+. . .++. -.+-+.++..++...-...++||+.+.+.+.++.-.|--.++ .+
T Consensus 400 QEFiR-I----------------R~~r--e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl-------~a 453 (691)
T KOG0338|consen 400 QEFIR-I----------------RPKR--EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGL-------KA 453 (691)
T ss_pred HHHhe-e----------------cccc--ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhc-------hh
Confidence 00000 0 0000 001112333444434467899999999999999887765443 35
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
.-+||+|++++|...++.|+.+.+.|+|||++|.+|+||++|..||| |+.|..+. .|.||.|
T Consensus 454 gElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~mP~t~e----------~Y~HRVG 515 (691)
T KOG0338|consen 454 GELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YAMPKTIE----------HYLHRVG 515 (691)
T ss_pred hhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--------ccCchhHH----------HHHHHhh
Confidence 58999999999999999999999999999999999999999999999 76665444 5569999
Q ss_pred hcCCC-CCCceEEcCCcchh
Q 046397 401 RAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 401 RAGR~-~~G~c~~L~s~~~~ 419 (901)
|+.|. +.|..+.|..+..-
T Consensus 516 RTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 516 RTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred hhhhcccCcceEEEeccccH
Confidence 99998 68999999887643
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=1.2e-29 Score=304.06 Aligned_cols=301 Identities=22% Similarity=0.254 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVG 90 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vG 90 (901)
.+.|.++++++.+++++++++|||+|||+.+.++++.. + ...+|+.|+++|+.+..+++.. +|. .+.
T Consensus 15 r~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~--g~~lVisPl~sL~~dq~~~l~~-~gi----~~~ 81 (591)
T TIGR01389 15 RPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------K--GLTVVISPLISLMKDQVDQLRA-AGV----AAA 81 (591)
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------C--CcEEEEcCCHHHHHHHHHHHHH-cCC----cEE
Confidence 46799999999999999999999999999887776632 1 1345556999999998888854 332 222
Q ss_pred EEEe---c-------ccccCCCceEEEEcHHHHHHHHh-cCCCCCCceEEEEecCcccCcc-hhHH--HHHHHHHHhhCC
Q 046397 91 YKVR---L-------EGMKGRDTRLLFCTTGILLRRLL-VDRNLKGVTHVIVDEVHERGMN-EDFL--LIVLKDLLSRRP 156 (901)
Q Consensus 91 y~vr---~-------e~~~~~~t~Ii~~T~g~Llr~L~-~~~~l~~~~~IIIDE~HeR~~~-~d~l--l~~lk~ll~~~~ 156 (901)
+-.. . ........+|+|+||+.|..... ..-...++++|||||||.-+-. .||- ...+..+....|
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~ 161 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP 161 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC
Confidence 2110 0 11123457899999998864322 2224568999999999964321 2332 223444555667
Q ss_pred CceEEEeccCCCHHHH---HhhhCC-CcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhh
Q 046397 157 ELRLVLMSATLDAELF---SSYFGG-ATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKR 232 (901)
Q Consensus 157 ~~kiIlmSATl~~~~f---~~yf~~-~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (901)
+.++|++|||++.... ..+++- .+...+.+...|- ..|.. .. .
T Consensus 162 ~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n-l~~~v----------~~---------------------~- 208 (591)
T TIGR01389 162 QVPRIALTATADAETRQDIRELLRLADANEFITSFDRPN-LRFSV----------VK---------------------K- 208 (591)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCC-cEEEE----------Ee---------------------C-
Confidence 7779999999976643 334431 1111111111110 00000 00 0
Q ss_pred hhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC
Q 046397 233 KSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL 312 (901)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 312 (901)
.+....++..+ ....+++.||||+++.+++.+++.|...++
T Consensus 209 -------------------------------------~~~~~~l~~~l-~~~~~~~~IIf~~sr~~~e~la~~L~~~g~- 249 (591)
T TIGR01389 209 -------------------------------------NNKQKFLLDYL-KKHRGQSGIIYASSRKKVEELAERLESQGI- 249 (591)
T ss_pred -------------------------------------CCHHHHHHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCCC-
Confidence 00001112222 223367899999999999999999987543
Q ss_pred CCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccH
Q 046397 313 GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIST 392 (901)
Q Consensus 313 ~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk 392 (901)
.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+ ||++.+ .
T Consensus 250 ------~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~~p~s----------~ 305 (591)
T TIGR01389 250 ------SALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YDMPGN----------L 305 (591)
T ss_pred ------CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cCCCCC----------H
Confidence 3668999999999999999999999999999999999999999999999 665554 4
Q ss_pred hcHHHHhhhcCCCC-CCceEEcCCcchhh
Q 046397 393 VSAQQRRGRAGRVQ-PGECYRLYPRCVYD 420 (901)
Q Consensus 393 a~~~QR~GRAGR~~-~G~c~~L~s~~~~~ 420 (901)
.+|.||+|||||.+ +|.|+.+|+..+..
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 46679999999985 89999999887654
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=298.08 Aligned_cols=370 Identities=21% Similarity=0.249 Sum_probs=253.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC---CeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG---AVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~---~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
.+.|.++++.+.++++++|++|||||||.++.+++++.+...+.+ ....++++.|-|+|+..+-.++.. .+...|.
T Consensus 24 t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~-~~~~~G~ 102 (814)
T COG1201 24 TPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE-PLRELGI 102 (814)
T ss_pred CHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH-HHHHcCC
Confidence 467999999999999999999999999999999999999876422 346788888999999999988843 2233444
Q ss_pred EeeEEEeccc--------ccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcc-----cCcchhHHHHHHHHH
Q 046397 88 SVGYKVRLEG--------MKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHE-----RGMNEDFLLIVLKDL 151 (901)
Q Consensus 88 ~vGy~vr~e~--------~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~He-----R~~~~d~ll~~lk~l 151 (901)
.| .+|..+ ...+.++|+++||+.|.-.|.+.. .|.++.+|||||+|+ ||..--..+..|+.+
T Consensus 103 ~v--~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l 180 (814)
T COG1201 103 EV--AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLREL 180 (814)
T ss_pred cc--ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhh
Confidence 33 232221 122468999999999987776643 799999999999994 666666665555554
Q ss_pred HhhCCCceEEEeccCC-CHHHHHhhhCCC----cEEeeCCcc-ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhh
Q 046397 152 LSRRPELRLVLMSATL-DAELFSSYFGGA----TVINIPGFT-YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMS 225 (901)
Q Consensus 152 l~~~~~~kiIlmSATl-~~~~f~~yf~~~----~~i~i~gr~-~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (901)
.. +++.|++|||+ +.+..++|+.+. .++.+++.. ..++...... .....
T Consensus 181 ~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~-------------~~~~~--------- 235 (814)
T COG1201 181 AG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVE-------------DLIYD--------- 235 (814)
T ss_pred Cc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCC-------------ccccc---------
Confidence 43 89999999999 788899998753 455555332 2233222111 00000
Q ss_pred cccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHH
Q 046397 226 KQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDK 305 (901)
Q Consensus 226 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 305 (901)
.. ...-....+..+.++ ...+|||+|++..++.++..
T Consensus 236 --------~~---------------------------------~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~ 272 (814)
T COG1201 236 --------EE---------------------------------LWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFR 272 (814)
T ss_pred --------cc---------------------------------hhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHH
Confidence 00 000011122233333 34899999999999999999
Q ss_pred HHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccc
Q 046397 306 LQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCL 385 (901)
Q Consensus 306 L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l 385 (901)
|..... ..+..|||+++.+.|..+.+.+++|..+++|||+.+|-||||.+|+.||+ |.+|.+...+
T Consensus 273 L~~~~~------~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~ 338 (814)
T COG1201 273 LKKLGP------DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRF 338 (814)
T ss_pred HHHhcC------CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHH
Confidence 987642 34779999999999999999999999999999999999999999999999 6555555555
Q ss_pred ccccccHhcHHHHhhhcCCCC----CCceEEcCCcchhhh-------c-ccCCCCcccccCccchhhhhhccCC------
Q 046397 386 LPSWISTVSAQQRRGRAGRVQ----PGECYRLYPRCVYDA-------F-AEYQLPEILRTPLQSLCLQIKSLRL------ 447 (901)
Q Consensus 386 ~~~~iSka~~~QR~GRAGR~~----~G~c~~L~s~~~~~~-------l-~~~~~PEi~r~~L~~~~L~~k~l~~------ 447 (901)
+ ||+||+|+.- .|..|...-.+..++ + -....+++-..+|+-+.-|+-.+-+
T Consensus 339 l----------QRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~ 408 (814)
T COG1201 339 L----------QRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEV 408 (814)
T ss_pred h----------HhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCH
Confidence 4 9999999872 233333221111111 1 1233567777788766666544322
Q ss_pred CCHHHHhhhhc--CCChHHHHHHHHHHHHH
Q 046397 448 GTIAGFLSRAL--QSPELLAVQNAIEYLKI 475 (901)
Q Consensus 448 ~~~~~fl~~~l--~pP~~~~v~~al~~L~~ 475 (901)
+...+++.++. .--+.+.+.+.++.|..
T Consensus 409 ~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 409 EEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 22333332221 11245677888888887
No 45
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.97 E-value=9e-33 Score=313.98 Aligned_cols=563 Identities=9% Similarity=-0.190 Sum_probs=443.5
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 4 FRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 4 ~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
.|.-+|..+..+.||+++..|.++++.+.||||||++.+++++|+..+......|.+++++||+++|...+.+++-++++
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctv 480 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTV 480 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeecc
Confidence 35568999999999999999999999999999999999999999998877777889999999999999999999999988
Q ss_pred ccCcEeeEEEecccccC-CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEE
Q 046397 84 KLGESVGYKVRLEGMKG-RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVL 162 (901)
Q Consensus 84 ~~g~~vGy~vr~e~~~~-~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIl 162 (901)
.++...+|..+++.... .+.-+-+||.+.|++.+..+ +.+..+.+.||.|++++++|+++.+++.+ +++.+
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~ 552 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTV 552 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceee
Confidence 88888888887765442 34567799999998877654 56678999999999999999999888764 34599
Q ss_pred eccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhccc-ccCCCCCCcc--hhhHHHhHhhcccchhhhhhhHHH
Q 046397 163 MSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGY-RLTPYNQIDD--YGQEKMWKMSKQAPRKRKSQIASA 239 (901)
Q Consensus 163 mSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 239 (901)
|++|.+...|-.++-.++...+++++++++.++.++-.+...- +-...+...+ +.+..-..+... .........
T Consensus 553 ~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~---se~d~~f~l 629 (1282)
T KOG0921|consen 553 HGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRL---SEKDIPFGL 629 (1282)
T ss_pred ccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcc---hhhcchhHH
Confidence 9999999999999999999999999999999886553221100 0000000000 000000000000 000001111
Q ss_pred HHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceE
Q 046397 240 VEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVL 319 (901)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~ 319 (901)
++..+.. .++..+...+..-.+++..|+|+++|.-+..+...+....++.. ....
T Consensus 630 ~Eal~~~------------------------i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~-Hsq~ 684 (1282)
T KOG0921|consen 630 IEALLND------------------------IASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPL-HSQL 684 (1282)
T ss_pred HHHHHhh------------------------hcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccc-hhhc
Confidence 2221111 11111222333335789999999999999999888888777654 3456
Q ss_pred EEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHh
Q 046397 320 LLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRR 399 (901)
Q Consensus 320 v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 399 (901)
+.+.|..+...++..+++....+.++++..|+..++.|++.++.+|++++..+.+.+-+...++.+-++|-+.-.-.||.
T Consensus 685 ~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 685 TSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred ccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEcCCcchhhhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCc
Q 046397 400 GRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGAL 479 (901)
Q Consensus 400 GRAGR~~~G~c~~L~s~~~~~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gal 479 (901)
|||+|...+.||++++...+..|..+..|||.++++....+.++.+-.+.+..|+.++..+|+...+..+--.+.+.-+.
T Consensus 765 G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~ 844 (1282)
T KOG0921|consen 765 GFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTP 844 (1282)
T ss_pred cccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999988888888776677778888888888877666555445444444
Q ss_pred cCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcC-CCCCcHHHHH
Q 046397 480 DHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFS-HDYSDHLALV 558 (901)
Q Consensus 480 d~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~-~~~sDhl~~l 558 (901)
+..-.+|++++.+...|+.|..|+|...++.+=..+...+++++-..+.+|...-.++ .-+...|+ +-.+||.+.+
T Consensus 845 lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~---~~~g~kfsdhva~~~v~q~ 921 (1282)
T KOG0921|consen 845 LGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQR---KFAGNKFSDHVAIVSVIQG 921 (1282)
T ss_pred hhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchh---hccccccccchhhhhhhhh
Confidence 4555689999999999999999999988887776777777777666667776543333 23567888 8999999999
Q ss_pred HHHHHHHHHhhcc-cchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCC
Q 046397 559 RAFEGWKDAERGL-AGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGL 606 (901)
Q Consensus 559 ~af~~w~~~~~~~-~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~ 606 (901)
..|+.|..+.... ....||..+-+...++.+-.++..||. ++...++
T Consensus 922 ~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe~ 969 (1282)
T KOG0921|consen 922 YREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPED 969 (1282)
T ss_pred hHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCccc
Confidence 9999999876543 467899999999999999999999988 6655544
No 46
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=4.4e-30 Score=279.40 Aligned_cols=311 Identities=23% Similarity=0.251 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-------CCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-------RGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-------~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
.+.|.+.+....+++++|..++||||||.+++.+++..+-... .......+++.|+|+||.|+.+.- ..++.
T Consensus 269 tpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt-~kf~~ 347 (673)
T KOG0333|consen 269 TPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET-NKFGK 347 (673)
T ss_pred chHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH-HHhcc
Confidence 3567778888899999999999999999999888886543211 111234556669999999987544 22333
Q ss_pred ccC----cEeeEEEeccc--ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-
Q 046397 84 KLG----ESVGYKVRLEG--MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR- 155 (901)
Q Consensus 84 ~~g----~~vGy~vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~- 155 (901)
.+| ..||-.-.-+. ..+..+.|+++|||.|+..|.+.. -+++...||+||++ |.++..|--.+.+.+-...
T Consensus 348 ~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPs 426 (673)
T KOG0333|consen 348 PLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPS 426 (673)
T ss_pred cccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCc
Confidence 333 23332222222 345679999999999998886554 68899999999999 3355544444444332210
Q ss_pred ----C--------------------CceEEEeccCCCHH---HHHhhhCCCcEEeeCC--cccc-ceEEeccchhhhccc
Q 046397 156 ----P--------------------ELRLVLMSATLDAE---LFSSYFGGATVINIPG--FTYP-VRTHFLEDILDMTGY 205 (901)
Q Consensus 156 ----~--------------------~~kiIlmSATl~~~---~f~~yf~~~~~i~i~g--r~~p-V~~~~l~d~~~~~~~ 205 (901)
| -.+.+.+|||+++. ....||..+-++.|.. +..| |+.....
T Consensus 427 sn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m-------- 498 (673)
T KOG0333|consen 427 SNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEM-------- 498 (673)
T ss_pred cccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEE--------
Confidence 0 14679999999653 5567888877777653 3322 1111100
Q ss_pred ccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcC
Q 046397 206 RLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKER 285 (901)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~ 285 (901)
.. + .++ + .-+..++++..
T Consensus 499 -~~-----e------------------d~k----------------------------------~----kkL~eil~~~~ 516 (673)
T KOG0333|consen 499 -VS-----E------------------DEK----------------------------------R----KKLIEILESNF 516 (673)
T ss_pred -ec-----c------------------hHH----------------------------------H----HHHHHHHHhCC
Confidence 00 0 000 0 01222333445
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEE
Q 046397 286 PGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFV 365 (901)
Q Consensus 286 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~V 365 (901)
..+||||+++.+.++.+++.|.+.+ +.+..|||+-++++|..++..|++|...|+||||+|++|||||||.+|
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g-------~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlV 589 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG-------YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLV 589 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc-------ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCcccee
Confidence 7899999999999999999999864 457799999999999999999999999999999999999999999999
Q ss_pred EeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcch
Q 046397 366 IDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 366 Id~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
|+ ||...++. .|.||+||+||. ..|.+..+|+.+.
T Consensus 590 in--------ydmaksie----------DYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 590 IN--------YDMAKSIE----------DYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred ee--------cchhhhHH----------HHHHHhccccccccCceeEEEeccch
Confidence 99 77766555 455999999999 5799999999876
No 47
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.9e-29 Score=273.39 Aligned_cols=358 Identities=20% Similarity=0.244 Sum_probs=229.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc----CCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV----RGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~----~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
....|.+.|+.+.++++++|.++||||||.++.++|.+.+.... +......+|++|||+||.|+++.+.+.....-
T Consensus 160 pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFH 239 (708)
T ss_pred cchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCce
Confidence 34678889999999999999999999999999999998876421 12233455555999999999999988765432
Q ss_pred CcEeeEEEecccccC------CCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCc---ccCcchhHHHHHHHHH---
Q 046397 86 GESVGYKVRLEGMKG------RDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVH---ERGMNEDFLLIVLKDL--- 151 (901)
Q Consensus 86 g~~vGy~vr~e~~~~------~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~H---eR~~~~d~ll~~lk~l--- 151 (901)
-..-|+-+..|.+.+ ....|+++|||.|+++|.+-. .++.+.+||+||++ |.|..-|+- .+++.+
T Consensus 240 WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit-~Il~~v~~~ 318 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDIT-QILKAVHSI 318 (708)
T ss_pred EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHH-HHHHHHhhc
Confidence 223355566666655 357899999999999998866 57889999999999 445555422 122222
Q ss_pred Hh-hCC------CceEEEeccCCCH--HHHHhh-hCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHH
Q 046397 152 LS-RRP------ELRLVLMSATLDA--ELFSSY-FGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKM 221 (901)
Q Consensus 152 l~-~~~------~~kiIlmSATl~~--~~f~~y-f~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 221 (901)
.. ... ..+-+++|||+.. ..+++. +.++-.|. ++......+ |. +
T Consensus 319 ~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~------------ld~s~~~~~----p~---~------- 372 (708)
T KOG0348|consen 319 QNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS------------LDKSHSQLN----PK---D------- 372 (708)
T ss_pred cchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee------------ccchhhhcC----cc---h-------
Confidence 11 111 2456899999943 344432 11221221 111000000 00 0
Q ss_pred hHhhcccchhhhhhhHHHHHHHHHhhcccccc-hhhhhhcc-c--CCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHH
Q 046397 222 WKMSKQAPRKRKSQIASAVEDTLKAANFNEYS-SQTRESLS-C--WNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWD 297 (901)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~-~--~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ 297 (901)
..+++......-+.+. ....+.+. . .-|.....--+..++...++.....+++||+.+.+
T Consensus 373 ----------------~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d 436 (708)
T KOG0348|consen 373 ----------------KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSD 436 (708)
T ss_pred ----------------hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechh
Confidence 0000000000000000 00000000 0 00111112224455666777777789999999999
Q ss_pred HHHHHHHHHHhCcc---------------CCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCe
Q 046397 298 DINSLNDKLQANRI---------------LGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDV 362 (901)
Q Consensus 298 ~i~~l~~~L~~~~~---------------~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V 362 (901)
.++.=++++...-. .....+..++.|||+|++++|..+|+.|.....-|++||++|++|+|+|+|
T Consensus 437 ~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V 516 (708)
T KOG0348|consen 437 SVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV 516 (708)
T ss_pred HHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCc
Confidence 99988887764211 111234668999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC-CCce--EEcCCcchhhhcccCCCC
Q 046397 363 VFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-PGEC--YRLYPRCVYDAFAEYQLP 428 (901)
Q Consensus 363 ~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c--~~L~s~~~~~~l~~~~~P 428 (901)
++||. ||++. |.++|.||+||+.|.+ .|.. |.+-++..|.+......+
T Consensus 517 ~~vVQ--------Yd~P~----------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 517 GLVVQ--------YDPPF----------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred CeEEE--------eCCCC----------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999 99876 5667779999988883 4544 444556666554433333
No 48
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-29 Score=256.32 Aligned_cols=316 Identities=21% Similarity=0.273 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVG 90 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vG 90 (901)
...|+..+..|.++++||..+..|+|||..+..-++...-- ..+...++|+.|+|+||.|+.+.+... |...+..+-
T Consensus 51 S~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~--~~r~tQ~lilsPTRELa~Qi~~vi~al-g~~mnvq~h 127 (400)
T KOG0328|consen 51 SAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI--SVRETQALILSPTRELAVQIQKVILAL-GDYMNVQCH 127 (400)
T ss_pred hHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc--ccceeeEEEecChHHHHHHHHHHHHHh-cccccceEE
Confidence 35577788889999999999999999996665555543311 123356788889999999998877433 222221111
Q ss_pred EEEec----c--cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEE
Q 046397 91 YKVRL----E--GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVL 162 (901)
Q Consensus 91 y~vr~----e--~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIl 162 (901)
-.+.. + .+.....+++.+|||.++.++.... .-..+.++|+||++|. ....+-.-+-++.+ ..|+.|+++
T Consensus 128 acigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem--L~kgfk~Qiydiyr~lp~~~Qvv~ 205 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM--LNKGFKEQIYDIYRYLPPGAQVVL 205 (400)
T ss_pred EEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH--HHhhHHHHHHHHHHhCCCCceEEE
Confidence 11111 1 1223457899999999999987665 5678999999999983 22222233334444 455899999
Q ss_pred eccCCCHHHHH--hhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 163 MSATLDAELFS--SYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 163 mSATl~~~~f~--~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
+|||++.+.+. +.|-.. ||++.--.|-+...| +
T Consensus 206 ~SATlp~eilemt~kfmtd----------pvrilvkrdeltlEg-----------------------------------I 240 (400)
T KOG0328|consen 206 VSATLPHEILEMTEKFMTD----------PVRILVKRDELTLEG-----------------------------------I 240 (400)
T ss_pred EeccCcHHHHHHHHHhcCC----------ceeEEEecCCCchhh-----------------------------------h
Confidence 99999887543 344332 233221111100000 0
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL 320 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v 320 (901)
....- ..-..++..+.++.+.....-...+|||+++..+..+.+.+.+. .+.|
T Consensus 241 Kqf~v--------------------~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~-------nftV 293 (400)
T KOG0328|consen 241 KQFFV--------------------AVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA-------NFTV 293 (400)
T ss_pred hhhee--------------------eechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh-------Ccee
Confidence 00000 00001122234555655556678999999999999999999875 3557
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
..+||.|+.+||.++...|+.|+-+|+++|++-++|||+|.|.+||+ ||.|.+... |.||+|
T Consensus 294 ssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YDLP~nre~----------YIHRIG 355 (400)
T KOG0328|consen 294 SSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YDLPNNREL----------YIHRIG 355 (400)
T ss_pred eeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cCCCccHHH----------Hhhhhc
Confidence 79999999999999999999999999999999999999999999999 888877654 459999
Q ss_pred hcCCC-CCCceEEcCCcchhhh
Q 046397 401 RAGRV-QPGECYRLYPRCVYDA 421 (901)
Q Consensus 401 RAGR~-~~G~c~~L~s~~~~~~ 421 (901)
|.||- +.|..+-+...++...
T Consensus 356 RSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 356 RSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred cccccCCcceEEEEecHHHHHH
Confidence 99999 6899999888766543
No 49
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=2.9e-29 Score=314.25 Aligned_cols=311 Identities=24% Similarity=0.309 Sum_probs=197.1
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhhc--------CCCeeEEEEecchHHHHHHHHHHHHHH----------hCC-ccCcEe
Q 046397 29 ISGETGCGKTTQVPQFILESEITSV--------RGAVCSIICTQPRRISAMSVSERVASE----------RGE-KLGESV 89 (901)
Q Consensus 29 I~~~TGsGKTtq~p~~ile~~~~~~--------~~~~~~IlvtqPrr~la~qva~rva~e----------~~~-~~g~~v 89 (901)
|++|||||||.++.+++++.++... ....++++++.|+|+|+.|+.+++... ++. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999887532 123467888889999999999887541 111 123344
Q ss_pred eEEEec----c--cccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcc-----cCcchhHHHHHHHHHHhhCC
Q 046397 90 GYKVRL----E--GMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHE-----RGMNEDFLLIVLKDLLSRRP 156 (901)
Q Consensus 90 Gy~vr~----e--~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~He-----R~~~~d~ll~~lk~ll~~~~ 156 (901)
+..... + ......++|+++||+.|..+|.+.. .++++++|||||+|+ ||......+..++.++ ..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CC
Confidence 422211 1 0112457999999999988776542 689999999999995 3333333343344432 24
Q ss_pred CceEEEeccCC-CHHHHHhhhCCC-cEEee-CC--ccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchh
Q 046397 157 ELRLVLMSATL-DAELFSSYFGGA-TVINI-PG--FTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRK 231 (901)
Q Consensus 157 ~~kiIlmSATl-~~~~f~~yf~~~-~~i~i-~g--r~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (901)
+.|+|++|||+ |.+.+.+|+++. ++..+ +. +..+++.. +.. .+...+.... .... ......
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~-vp~-~d~~~~~~~~----~~~~--------~~~~~~ 224 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIV-VPV-ANMDDVSSVA----SGTG--------EDSHAG 224 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEE-Eec-Cchhhccccc----cccc--------cccchh
Confidence 68999999999 778899999753 32212 21 12223221 110 0000000000 0000 000000
Q ss_pred hhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc
Q 046397 232 RKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI 311 (901)
Q Consensus 232 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~ 311 (901)
... .+.......++..+ ....++|||++++..++.++..|.+...
T Consensus 225 r~~--------------------------------~i~~~v~~~il~~i---~~~~stLVFvNSR~~AE~La~~L~~~~~ 269 (1490)
T PRK09751 225 REG--------------------------------SIWPYIETGILDEV---LRHRSTIVFTNSRGLAEKLTARLNELYA 269 (1490)
T ss_pred hhh--------------------------------hhhHHHHHHHHHHH---hcCCCEEEECCCHHHHHHHHHHHHHhhh
Confidence 000 00000001122222 2357899999999999999999976321
Q ss_pred C-------------------C-------CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEE
Q 046397 312 L-------------------G-------DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFV 365 (901)
Q Consensus 312 ~-------------------~-------~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~V 365 (901)
. + ....+.+..|||+|+.++|..+++.|++|+.++||||+.+|.||||++|++|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlV 349 (1490)
T PRK09751 270 ARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLV 349 (1490)
T ss_pred hhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEE
Confidence 0 0 0012346789999999999999999999999999999999999999999999
Q ss_pred EeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCC
Q 046397 366 IDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPG 408 (901)
Q Consensus 366 Id~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G 408 (901)
|+ |+.+ .|.++|.||+|||||...|
T Consensus 350 Iq--------~gsP----------~sVas~LQRiGRAGR~~gg 374 (1490)
T PRK09751 350 IQ--------VATP----------LSVASGLQRIGRAGHQVGG 374 (1490)
T ss_pred EE--------eCCC----------CCHHHHHHHhCCCCCCCCC
Confidence 99 4443 3667888999999997433
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=1.5e-28 Score=300.81 Aligned_cols=298 Identities=22% Similarity=0.293 Sum_probs=206.6
Q ss_pred cHHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 10 AYKEKNRLLTAISQN------QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 10 i~~~q~~il~~i~~~------~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
..+.|.++++.+.++ .+.+++|+||||||.++..+++..... +. .++++.||++||.|+++.+.+.+..
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 467889999999774 688999999999999988888776532 33 4555569999999999999876542
Q ss_pred ccCcEeeEEEecc----------cccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh
Q 046397 84 KLGESVGYKVRLE----------GMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS 153 (901)
Q Consensus 84 ~~g~~vGy~vr~e----------~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~ 153 (901)
.+..++.-.++. .......+|+|+||..+ ..+-.+.++++|||||+|+.+... ...+..
T Consensus 527 -~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~~------~~~L~~ 595 (926)
T TIGR00580 527 -FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVKQ------KEKLKE 595 (926)
T ss_pred -CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccchhH------HHHHHh
Confidence 333333211111 11123579999999533 334478899999999999743221 122223
Q ss_pred hCCCceEEEeccCCCHHHHHhhh-C--CCcEEeeC-CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 154 RRPELRLVLMSATLDAELFSSYF-G--GATVINIP-GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 154 ~~~~~kiIlmSATl~~~~f~~yf-~--~~~~i~i~-gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
..++.++++||||+.+..+.... + +..++..+ ....|++.++.+. +
T Consensus 596 ~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~---------------~--------------- 645 (926)
T TIGR00580 596 LRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEY---------------D--------------- 645 (926)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEec---------------C---------------
Confidence 45678999999998766554322 2 22233332 1123444433210 0
Q ss_pred hhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhC
Q 046397 230 RKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQAN 309 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 309 (901)
. ..+.+ .+...+ ..+++++||+|+.++++.+++.|...
T Consensus 646 ---~----~~i~~--------------------------------~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~ 683 (926)
T TIGR00580 646 ---P----ELVRE--------------------------------AIRREL---LRGGQVFYVHNRIESIEKLATQLREL 683 (926)
T ss_pred ---H----HHHHH--------------------------------HHHHHH---HcCCeEEEEECCcHHHHHHHHHHHHh
Confidence 0 00000 011111 23689999999999999999999864
Q ss_pred ccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccccc
Q 046397 310 RILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSW 389 (901)
Q Consensus 310 ~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~ 389 (901)
. ..+.+..+||+|+.++|.++++.|.+|+.+|||||+++|+|||||++++||. +|++..
T Consensus 684 ~-----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~-------- 742 (926)
T TIGR00580 684 V-----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERADKF-------- 742 (926)
T ss_pred C-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCCCC--------
Confidence 1 1356889999999999999999999999999999999999999999999997 555431
Q ss_pred ccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 390 ISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 390 iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
+-+++.||+||+||. +.|.||.+++..
T Consensus 743 -gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 743 -GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred -CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 223567999999998 689999998753
No 51
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.1e-29 Score=260.89 Aligned_cols=316 Identities=20% Similarity=0.271 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
+.|...++.|..++++|-+|.||||||+++.+++++.+-+...|-.+ +|..|||++|.|+++++.. .|...+..+..
T Consensus 32 piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFa--lvlTPTrELA~QiaEQF~a-lGk~l~lK~~v 108 (442)
T KOG0340|consen 32 PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFA--LVLTPTRELALQIAEQFIA-LGKLLNLKVSV 108 (442)
T ss_pred chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceE--EEecchHHHHHHHHHHHHH-hcccccceEEE
Confidence 45889999999999999999999999999999999998665555433 3444999999999999943 33333333322
Q ss_pred EEec------ccccCCCceEEEEcHHHHHHHHhcCC-----CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCc-e
Q 046397 92 KVRL------EGMKGRDTRLLFCTTGILLRRLLVDR-----NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPEL-R 159 (901)
Q Consensus 92 ~vr~------e~~~~~~t~Ii~~T~g~Llr~L~~~~-----~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~-k 159 (901)
-+.+ ....+.+++++++|||.|-..+.+++ .+.++.++|+|||+ |-+..+ +-..|+.+...-|.. +
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~-f~d~L~~i~e~lP~~RQ 186 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGC-FPDILEGIEECLPKPRQ 186 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccc-hhhHHhhhhccCCCccc
Confidence 2222 23345789999999999999988874 57889999999999 434443 334455555555554 7
Q ss_pred EEEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHH
Q 046397 160 LVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASA 239 (901)
Q Consensus 160 iIlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (901)
.+++|||++.. ....|+ +|+-.- .. ++++.+ +...
T Consensus 187 tLlfSATitd~-i~ql~~-~~i~k~--~a-----~~~e~~---------~~vs--------------------------- 221 (442)
T KOG0340|consen 187 TLLFSATITDT-IKQLFG-CPITKS--IA-----FELEVI---------DGVS--------------------------- 221 (442)
T ss_pred eEEEEeehhhH-HHHhhc-CCcccc--cc-----eEEecc---------CCCC---------------------------
Confidence 99999999543 233332 221100 00 111100 0000
Q ss_pred HHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHH---hhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCC
Q 046397 240 VEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYIC---EKERPGAVLVFMTGWDDINSLNDKLQANRILGDPT 316 (901)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~---~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~ 316 (901)
+.+.+... | -..+.+.++..+.++. ++++.+.++||+++..+++.++..|...
T Consensus 222 tvetL~q~----y-------------I~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l------- 277 (442)
T KOG0340|consen 222 TVETLYQG----Y-------------ILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL------- 277 (442)
T ss_pred chhhhhhh----e-------------eecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh-------
Confidence 00000000 0 0001111122222332 2236799999999999999999999865
Q ss_pred ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHH
Q 046397 317 RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 317 ~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 396 (901)
.+.+..+||.|++.+|-..+.+|+++..+|+|||++|.+|+|||.|..||| ||.|..... |.
T Consensus 278 e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~diPr~P~~----------yi 339 (442)
T KOG0340|consen 278 EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN--------HDIPRDPKD----------YI 339 (442)
T ss_pred ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe--------cCCCCCHHH----------HH
Confidence 456889999999999999999999999999999999999999999999999 776665554 55
Q ss_pred HHhhhcCCC-CCCceEEcCCcchh
Q 046397 397 QRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 397 QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
||.||+.|. +.|..+.++++.+.
T Consensus 340 HRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 340 HRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred HhhcchhcccCCcceEEEechhhH
Confidence 999999998 57888888885443
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=4e-28 Score=293.29 Aligned_cols=297 Identities=20% Similarity=0.259 Sum_probs=201.9
Q ss_pred cHHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 10 AYKEKNRLLTAISQN------QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 10 i~~~q~~il~~i~~~------~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
....|+++++.|.++ .+++++|+||||||.++..+++.... .| +.++++.||++||.|+++.+.+.+.
T Consensus 262 lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g--~q~lilaPT~~LA~Q~~~~l~~l~~- 335 (681)
T PRK10917 262 LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AG--YQAALMAPTEILAEQHYENLKKLLE- 335 (681)
T ss_pred CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cC--CeEEEEeccHHHHHHHHHHHHHHHh-
Confidence 678899999999776 37899999999999999888887652 23 3466666999999999999976653
Q ss_pred ccCcEeeEEEeccc----------ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh
Q 046397 84 KLGESVGYKVRLEG----------MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS 153 (901)
Q Consensus 84 ~~g~~vGy~vr~e~----------~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~ 153 (901)
..|..++.-..... ......+|+|+|++.+.. .-.+.++++|||||+|.-+... . ..+..
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~q--r----~~l~~ 405 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVEQ--R----LALRE 405 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHHH--H----HHHHh
Confidence 23334443222211 123468999999987643 2357899999999999643221 1 12222
Q ss_pred hCCCceEEEeccCCCHHHHH-hhhCCCcEEeeC---CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 154 RRPELRLVLMSATLDAELFS-SYFGGATVINIP---GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 154 ~~~~~kiIlmSATl~~~~f~-~yf~~~~~i~i~---gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
.....++++||||+.+..+. .+++...+..+. ....|+...+...-
T Consensus 406 ~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~------------------------------ 455 (681)
T PRK10917 406 KGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDS------------------------------ 455 (681)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcc------------------------------
Confidence 34467899999998665443 334433322222 11123333322110
Q ss_pred hhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHH--------HHHH
Q 046397 230 RKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWD--------DINS 301 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~--------~i~~ 301 (901)
.. + .++..+...+ ..+.+++||||..+ .+..
T Consensus 456 --~~-------~-----------------------------~~~~~i~~~~---~~g~q~~v~~~~ie~s~~l~~~~~~~ 494 (681)
T PRK10917 456 --RR-------D-----------------------------EVYERIREEI---AKGRQAYVVCPLIEESEKLDLQSAEE 494 (681)
T ss_pred --cH-------H-----------------------------HHHHHHHHHH---HcCCcEEEEEcccccccchhHHHHHH
Confidence 00 0 0001111111 34569999999654 4456
Q ss_pred HHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCC
Q 046397 302 LNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNN 381 (901)
Q Consensus 302 l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~ 381 (901)
+++.|.... ..+.+..+||+|+.++|..+++.|++|+.+|||||+++|+|||+|++++||. ||++..
T Consensus 495 ~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~ 561 (681)
T PRK10917 495 TYEELQEAF-----PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERF 561 (681)
T ss_pred HHHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCC
Confidence 667776541 1256889999999999999999999999999999999999999999999998 665531
Q ss_pred ccccccccccHhcHHHHhhhcCCC-CCCceEEcCC
Q 046397 382 TSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYP 415 (901)
Q Consensus 382 ~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s 415 (901)
+-+++.||+||+||. .+|.||.+++
T Consensus 562 ---------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 562 ---------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ---------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 234677999999998 5899999985
No 53
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=3e-28 Score=275.10 Aligned_cols=299 Identities=21% Similarity=0.251 Sum_probs=189.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEE------e-----
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKV------R----- 94 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~v------r----- 94 (901)
+++|+||||||||+++++++++... .. ...+++++.|+|+++.|+++++...++..++...|... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~-~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK-SQ--KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh-hC--CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 4799999999999999999998743 22 23478888899999999999999988765543222100 0
Q ss_pred ccc------c---cCCCceEEEEcHHHHHHHHhcCC-----CC--CCceEEEEecCcccCcc-hhHHHHHHHHHHhhCCC
Q 046397 95 LEG------M---KGRDTRLLFCTTGILLRRLLVDR-----NL--KGVTHVIVDEVHERGMN-EDFLLIVLKDLLSRRPE 157 (901)
Q Consensus 95 ~e~------~---~~~~t~Ii~~T~g~Llr~L~~~~-----~l--~~~~~IIIDE~HeR~~~-~d~ll~~lk~ll~~~~~ 157 (901)
.+. . ......|+++||+.++..+.... .+ -..++|||||+|...-. .+++..+++.+. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~ 155 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DND 155 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcC
Confidence 000 0 01236799999999998776521 11 12379999999974321 233444444332 357
Q ss_pred ceEEEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhH
Q 046397 158 LRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIA 237 (901)
Q Consensus 158 ~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (901)
.++|+||||++ +.+.+|+........+. .++.... .. ...+... .
T Consensus 156 ~~~i~~SATlp-~~l~~~~~~~~~~~~~~-~~~~~~~--~~---~~~~~~~--------------~-------------- 200 (358)
T TIGR01587 156 VPILLMSATLP-KFLKEYAEKIGYVEFNE-PLDLKEE--RR---FERHRFI--------------K-------------- 200 (358)
T ss_pred CCEEEEecCch-HHHHHHHhcCCCccccc-CCCCccc--cc---cccccce--------------e--------------
Confidence 89999999997 45666665322111000 0000000 00 0000000 0
Q ss_pred HHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCc
Q 046397 238 SAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTR 317 (901)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~ 317 (901)
. ..........+..++.. ...++++||||+++++++.+++.|.+....
T Consensus 201 --~----------------------~~~~~~~~~~l~~l~~~---~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~----- 248 (358)
T TIGR01587 201 --I----------------------ESDKVGEISSLERLLEF---IKKGGKIAIIVNTVDRAQEFYQQLKENAPE----- 248 (358)
T ss_pred --e----------------------ccccccCHHHHHHHHHH---hhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----
Confidence 0 00000011112222211 134689999999999999999999875321
Q ss_pred eEEEEecCCCCHHHHHh----hcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHh
Q 046397 318 VLLLTCHGSMASSEQRL----IFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTV 393 (901)
Q Consensus 318 ~~v~~lhs~l~~~eq~~----i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 393 (901)
..+..+||++++.+|.+ +++.|++|..+|||||+++|+||||| +++||. |+. +..
T Consensus 249 ~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~~~------------~~~ 307 (358)
T TIGR01587 249 EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------ELA------------PID 307 (358)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------cCC------------CHH
Confidence 34889999999999876 48899999999999999999999996 667775 322 335
Q ss_pred cHHHHhhhcCCCCC-----CceEEcCCcc
Q 046397 394 SAQQRRGRAGRVQP-----GECYRLYPRC 417 (901)
Q Consensus 394 ~~~QR~GRAGR~~~-----G~c~~L~s~~ 417 (901)
+|.||+||+||.+. |..|.++...
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 78899999999842 3667776554
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=1.7e-28 Score=294.74 Aligned_cols=305 Identities=22% Similarity=0.304 Sum_probs=201.2
Q ss_pred hhcCCC--cHHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHH
Q 046397 4 FRRNLP--AYKEKNRLLTAISQN------QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSE 75 (901)
Q Consensus 4 ~r~~LP--i~~~q~~il~~i~~~------~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~ 75 (901)
+.+.|| ....|+++++.|.++ .+.+++|+||||||.++..+++.... .|. .++++.||++||.|+++
T Consensus 228 ~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~--qvlilaPT~~LA~Q~~~ 302 (630)
T TIGR00643 228 FLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGY--QVALMAPTEILAEQHYN 302 (630)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCC--cEEEECCHHHHHHHHHH
Confidence 334555 577899999888765 25799999999999998888877652 232 46666799999999999
Q ss_pred HHHHHhCCccCcEeeEEEe----------cccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHH
Q 046397 76 RVASERGEKLGESVGYKVR----------LEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLL 145 (901)
Q Consensus 76 rva~e~~~~~g~~vGy~vr----------~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll 145 (901)
.+.+.++ ..|..++.-.. .+.....+.+|+|+|++.+.. +..+.++++|||||+|..+... .
T Consensus 303 ~~~~l~~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~q--r- 374 (630)
T TIGR00643 303 SLRNLLA-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQ--R- 374 (630)
T ss_pred HHHHHhc-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHH--H-
Confidence 9977654 22333332111 111223457999999987653 3367899999999999744322 1
Q ss_pred HHHHHHHhhCCCceEEEeccCCCHHHHH-hhhCCCcEEe---eCCccccceEEeccchhhhcccccCCCCCCcchhhHHH
Q 046397 146 IVLKDLLSRRPELRLVLMSATLDAELFS-SYFGGATVIN---IPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKM 221 (901)
Q Consensus 146 ~~lk~ll~~~~~~kiIlmSATl~~~~f~-~yf~~~~~i~---i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 221 (901)
..+..........++++||||+.+..+. ..++...+.. .+....|+...+...-
T Consensus 375 ~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~---------------------- 432 (630)
T TIGR00643 375 KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHD---------------------- 432 (630)
T ss_pred HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcc----------------------
Confidence 1121111111267899999998555433 2233221111 1211123333322100
Q ss_pred hHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhh-cCCCcEEEEcCCHH---
Q 046397 222 WKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEK-ERPGAVLVFMTGWD--- 297 (901)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~~--- 297 (901)
.. ..++..+.+. ..+..++||||..+
T Consensus 433 ----------~~----------------------------------------~~~~~~i~~~l~~g~q~~v~~~~i~~s~ 462 (630)
T TIGR00643 433 ----------EK----------------------------------------DIVYEFIEEEIAKGRQAYVVYPLIEESE 462 (630)
T ss_pred ----------hH----------------------------------------HHHHHHHHHHHHhCCcEEEEEccccccc
Confidence 00 0011111111 23568999999763
Q ss_pred -----HHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcc
Q 046397 298 -----DINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAK 372 (901)
Q Consensus 298 -----~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k 372 (901)
.++.+++.|.... ..+.+..+||+|++++|..+++.|++|+.+|||||+++|+|||+|++++||.
T Consensus 463 ~~~~~~a~~~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----- 532 (630)
T TIGR00643 463 KLDLKAAEALYERLKKAF-----PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----- 532 (630)
T ss_pred cchHHHHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE-----
Confidence 4556666666531 2356889999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCC
Q 046397 373 ETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYP 415 (901)
Q Consensus 373 ~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s 415 (901)
||++.. +-+++.||+|||||. .+|.||.++.
T Consensus 533 ---~~~~r~---------gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 533 ---EDAERF---------GLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ---eCCCcC---------CHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 665431 235677999999998 5899999983
No 55
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7.1e-29 Score=274.39 Aligned_cols=308 Identities=20% Similarity=0.242 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC--------CCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR--------GAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~--------~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
.+|+-.++.+..++.++++|+||||||.+++.++++.++..+. +....++++.|||+||.|++++..+..+.
T Consensus 99 pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~ 178 (482)
T KOG0335|consen 99 PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYL 178 (482)
T ss_pred cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccc
Confidence 3566678889999999999999999999999999999876432 11345666669999999999999877654
Q ss_pred ccCc-EeeEEEec----ccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcc-hhHHHHHHHHHHhhC-
Q 046397 84 KLGE-SVGYKVRL----EGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMN-EDFLLIVLKDLLSRR- 155 (901)
Q Consensus 84 ~~g~-~vGy~vr~----e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~-~d~ll~~lk~ll~~~- 155 (901)
..-. .+.|.-+- .....+.++|+|||||.|...+.... .|.++.++|+||++ |.++ ..|... ++.++...
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~-Ir~iv~~~~ 256 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQ-IRKIVEQLG 256 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-Hhhhhcccccc-HHHHhcccC
Confidence 3222 22333211 11223578999999999999887766 79999999999999 4355 333333 44444432
Q ss_pred ----CCceEEEeccCCCHH--HHHhhhCCCc--EEeeC--Cccc-cceEEeccchhhhcccccCCCCCCcchhhHHHhHh
Q 046397 156 ----PELRLVLMSATLDAE--LFSSYFGGAT--VINIP--GFTY-PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKM 224 (901)
Q Consensus 156 ----~~~kiIlmSATl~~~--~f~~yf~~~~--~i~i~--gr~~-pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (901)
...+-+++|||.+.+ .+..+|-.-. .+.|. |.+- -+....+
T Consensus 257 ~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~---------------------------- 308 (482)
T KOG0335|consen 257 MPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL---------------------------- 308 (482)
T ss_pred CCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee----------------------------
Confidence 356789999998654 3444443111 11111 1110 0000000
Q ss_pred hcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhc---CCC-----cEEEEcCCH
Q 046397 225 SKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKE---RPG-----AVLVFMTGW 296 (901)
Q Consensus 225 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~---~~g-----~iLVFl~~~ 296 (901)
...+.+...+++..+.... ..+ .++||+.++
T Consensus 309 -----------------------------------------~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~ 347 (482)
T KOG0335|consen 309 -----------------------------------------FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETK 347 (482)
T ss_pred -----------------------------------------eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeecc
Confidence 0000111111222222111 233 899999999
Q ss_pred HHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccccc
Q 046397 297 DDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSY 376 (901)
Q Consensus 297 ~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~y 376 (901)
+.+..+...|...+.. ...+||..++.+|.+.++.|+.|...|+|||||+++|+|||+|++||+ |
T Consensus 348 ~~~d~l~~~l~~~~~~-------~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------y 412 (482)
T KOG0335|consen 348 RGADELAAFLSSNGYP-------AKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------Y 412 (482)
T ss_pred chhhHHHHHHhcCCCC-------ceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------e
Confidence 9999999999887554 448999999999999999999999999999999999999999999999 9
Q ss_pred ccCCCccccccccccHhcHHHHhhhcCCCC-CCceEEcCC
Q 046397 377 DALNNTSCLLPSWISTVSAQQRRGRAGRVQ-PGECYRLYP 415 (901)
Q Consensus 377 d~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L~s 415 (901)
|.+.....|+ ||+||+||.+ .|....+|.
T Consensus 413 DmP~d~d~Yv----------HRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 413 DMPADIDDYV----------HRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred ecCcchhhHH----------HhccccccCCCCceeEEEec
Confidence 9888877665 9999999995 688888887
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=1.2e-27 Score=298.67 Aligned_cols=297 Identities=20% Similarity=0.252 Sum_probs=202.2
Q ss_pred cHHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 10 AYKEKNRLLTAISQN------QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 10 i~~~q~~il~~i~~~------~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
..+.|.++++.+..+ .+++++|+||+|||.++..++.... . .+. .++|+.||++||.|+++.+.+.++.
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-~--~g~--qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-E--NHK--QVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH-H--cCC--eEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 567899999998876 7899999999999988766655443 2 233 4556669999999999999776542
Q ss_pred ccCcEeeEEEeccc----------ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh
Q 046397 84 KLGESVGYKVRLEG----------MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS 153 (901)
Q Consensus 84 ~~g~~vGy~vr~e~----------~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~ 153 (901)
.+..++.-.++.+ ......+|+|+||+.+ ..+..+.++++|||||+|.-+... ...+..
T Consensus 676 -~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~~------~e~lk~ 744 (1147)
T PRK10689 676 -WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVRH------KERIKA 744 (1147)
T ss_pred -CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchhH------HHHHHh
Confidence 2222322222111 1123579999999754 233467889999999999743321 122223
Q ss_pred hCCCceEEEeccCCCHHHHH---hhhCCCcEEeeCCc-cccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 154 RRPELRLVLMSATLDAELFS---SYFGGATVINIPGF-TYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 154 ~~~~~kiIlmSATl~~~~f~---~yf~~~~~i~i~gr-~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
..++.++++||||+.+..+. ..+.+..++..+.. ..+++.++.+. +
T Consensus 745 l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~---------------~--------------- 794 (1147)
T PRK10689 745 MRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY---------------D--------------- 794 (1147)
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEec---------------C---------------
Confidence 45688999999998665433 22334444443321 12333222100 0
Q ss_pred hhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhC
Q 046397 230 RKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQAN 309 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 309 (901)
.......++..+. ..|.++||++++++++.+++.|.+.
T Consensus 795 ---------------------------------------~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~ 832 (1147)
T PRK10689 795 ---------------------------------------SLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAEL 832 (1147)
T ss_pred ---------------------------------------cHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHh
Confidence 0000111222222 3579999999999999999999875
Q ss_pred ccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccccc
Q 046397 310 RILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSW 389 (901)
Q Consensus 310 ~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~ 389 (901)
. ....+..+||+|+.++|.+++..|++|+.+|||||+++|+|||||+|++||. +++..
T Consensus 833 ~-----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad~--------- 890 (1147)
T PRK10689 833 V-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADH--------- 890 (1147)
T ss_pred C-----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCCC---------
Confidence 2 1245778999999999999999999999999999999999999999999994 22211
Q ss_pred ccHhcHHHHhhhcCCC-CCCceEEcCCc
Q 046397 390 ISTVSAQQRRGRAGRV-QPGECYRLYPR 416 (901)
Q Consensus 390 iSka~~~QR~GRAGR~-~~G~c~~L~s~ 416 (901)
.+-++|.||+||+||. ..|.||.+++.
T Consensus 891 fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 0224578999999998 68999988864
No 57
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.7e-28 Score=254.29 Aligned_cols=314 Identities=20% Similarity=0.238 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 11 YKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 11 ~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
.+.|+..++.+..+ +++|..+..|+|||+++.+.+|.+.-... .....+|+.|+|+||.|+-+.| .++|...+..
T Consensus 114 skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~it 190 (477)
T KOG0332|consen 114 SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVPQCICLAPTRELAPQTGEVV-EEMGKFTELT 190 (477)
T ss_pred chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCCCceeeCchHHHHHHHHHHH-HHhcCceeee
Confidence 46688888888654 68999999999999999998887653222 2334667789999999988655 7888777777
Q ss_pred eeEEEecccccCC---CceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEE
Q 046397 89 VGYKVRLEGMKGR---DTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVL 162 (901)
Q Consensus 89 vGy~vr~e~~~~~---~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIl 162 (901)
..|.++....... ..+|+++|||.+++++..-. .+..+.++|+|||+.. ++++-+...--.+...- ++.++++
T Consensus 191 a~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M-i~tqG~~D~S~rI~~~lP~~~QllL 269 (477)
T KOG0332|consen 191 ASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM-IDTQGFQDQSIRIMRSLPRNQQLLL 269 (477)
T ss_pred EEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh-hhcccccccchhhhhhcCCcceEEe
Confidence 8899987633322 36899999999999887633 6788999999999942 33321111111222223 4899999
Q ss_pred eccCCCHH--HHHh-hhCCCcEEeeCCc---cccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhh
Q 046397 163 MSATLDAE--LFSS-YFGGATVINIPGF---TYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQI 236 (901)
Q Consensus 163 mSATl~~~--~f~~-yf~~~~~i~i~gr---~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (901)
+|||.+.. .|.. ...++..+.+..+ .++|..+|+.-.
T Consensus 270 FSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~------------------------------------- 312 (477)
T KOG0332|consen 270 FSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA------------------------------------- 312 (477)
T ss_pred eechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc-------------------------------------
Confidence 99998543 4443 3345555555433 245555554210
Q ss_pred HHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCC
Q 046397 237 ASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPT 316 (901)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~ 316 (901)
..+-.-++++.+.....-|..+|||.+++.+..++..+.+.+
T Consensus 313 --------------------------------~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~G------ 354 (477)
T KOG0332|consen 313 --------------------------------CRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEG------ 354 (477)
T ss_pred --------------------------------chhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcC------
Confidence 001111234445555567899999999999999999998764
Q ss_pred ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHH
Q 046397 317 RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 317 ~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 396 (901)
..|..+||.|..++|..+.+.|+.|.-||+|+||+.++|||++.|.+||+ ||.+.....- -....|.
T Consensus 355 -h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN--------ydlP~~~~~~----pD~etYl 421 (477)
T KOG0332|consen 355 -HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN--------YDLPVKYTGE----PDYETYL 421 (477)
T ss_pred -ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe--------cCCccccCCC----CCHHHHH
Confidence 34779999999999999999999999999999999999999999999999 6655443221 3556788
Q ss_pred HHhhhcCCC-CCCceEEcCCc
Q 046397 397 QRRGRAGRV-QPGECYRLYPR 416 (901)
Q Consensus 397 QR~GRAGR~-~~G~c~~L~s~ 416 (901)
||+||+||- +.|..+-|...
T Consensus 422 HRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 422 HRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred HHhcccccccccceEEEeecc
Confidence 999999999 57999998654
No 58
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=259.48 Aligned_cols=311 Identities=21% Similarity=0.291 Sum_probs=227.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHh----hcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 14 KNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEIT----SVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 14 q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~----~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
|.+..+.+.++++++.++.||+|||..++.+-+.+... .+......+++..|||+||.|+--.+.++.-...-..+
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc 326 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence 56678888999999999999999998887765444321 11223346777779999999998888776433222222
Q ss_pred eEE--Eeccc--ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 90 GYK--VRLEG--MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 90 Gy~--vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
=|+ -|.+. ...+...|+++|||.|......+. .|..++++|+||++ |.++..|-..+.+.++..+|+-+.++.|
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeec
Confidence 222 12221 123568999999999998776655 89999999999999 6788888889999999999999999999
Q ss_pred cCCCHH--HH-HhhhCCCcEEeeCCcc-----ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhh
Q 046397 165 ATLDAE--LF-SSYFGGATVINIPGFT-----YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQI 236 (901)
Q Consensus 165 ATl~~~--~f-~~yf~~~~~i~i~gr~-----~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (901)
||-+.. .+ .+|+.++-++ .-|.. ..|+..++-. + .+..
T Consensus 406 ATWP~~VrrLa~sY~Kep~~v-~vGsLdL~a~~sVkQ~i~v~---------~------------------------d~~k 451 (629)
T KOG0336|consen 406 ATWPEGVRRLAQSYLKEPMIV-YVGSLDLVAVKSVKQNIIVT---------T------------------------DSEK 451 (629)
T ss_pred ccCchHHHHHHHHhhhCceEE-EecccceeeeeeeeeeEEec---------c------------------------cHHH
Confidence 998654 33 4566654433 33332 2233222100 0 0000
Q ss_pred HHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCC
Q 046397 237 ASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPT 316 (901)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~ 316 (901)
.. ++..+ ........++||||....-+..+...|.-.++..
T Consensus 452 ~~---------------------------------~~~~f---~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~--- 492 (629)
T KOG0336|consen 452 LE---------------------------------IVQFF---VANMSSNDKVIIFVSRKVMADHLSSDFCLKGISS--- 492 (629)
T ss_pred HH---------------------------------HHHHH---HHhcCCCceEEEEEechhhhhhccchhhhcccch---
Confidence 00 01111 1122456799999999887777776666554443
Q ss_pred ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHH
Q 046397 317 RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 317 ~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 396 (901)
-.+||+-.+.+|...++.|++|+.+|+|||++|.+|+|+|||++|++ ||.+.++..|+
T Consensus 493 ----q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeYV---------- 550 (629)
T KOG0336|consen 493 ----QSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEYV---------- 550 (629)
T ss_pred ----hhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cCCCccHHHHH----------
Confidence 37999999999999999999999999999999999999999999999 99998888666
Q ss_pred HHhhhcCCC-CCCceEEcCCcchhh
Q 046397 397 QRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 397 QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
||.||+||. +.|....++++.+..
T Consensus 551 HRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred HHhcccccCCCCcceEEEEehhhHH
Confidence 999999999 679999999987764
No 59
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.9e-29 Score=272.32 Aligned_cols=325 Identities=22% Similarity=0.264 Sum_probs=209.4
Q ss_pred HHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHHHHHhhc-----------CCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 13 EKNRLLTAISQN-QVVIISGETGCGKTTQVPQFILESEITSV-----------RGAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 13 ~q~~il~~i~~~-~~viI~~~TGsGKTtq~p~~ile~~~~~~-----------~~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
.|...++++..+ .+++-.|+||||||+++-++|++...+.+ ++....-+|+.|||+||.|+.+.+...
T Consensus 207 IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai 286 (731)
T KOG0347|consen 207 IQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAI 286 (731)
T ss_pred chhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHh
Confidence 455566666655 88999999999999999999998443211 222223566669999999999888543
Q ss_pred hC---CccCcEee-EEEe-cccccCCCceEEEEcHHHHHHHHhcCC----CCCCceEEEEecCcccCcc---hhHHHHHH
Q 046397 81 RG---EKLGESVG-YKVR-LEGMKGRDTRLLFCTTGILLRRLLVDR----NLKGVTHVIVDEVHERGMN---EDFLLIVL 148 (901)
Q Consensus 81 ~~---~~~g~~vG-y~vr-~e~~~~~~t~Ii~~T~g~Llr~L~~~~----~l~~~~~IIIDE~HeR~~~---~d~ll~~l 148 (901)
.. ..+...+| ..+. -+......++|+|+|||+|...+..+. .++++.++||||++ |.+. .+-|..+|
T Consensus 287 ~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els~lL 365 (731)
T KOG0347|consen 287 AEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELSKLL 365 (731)
T ss_pred ccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHHHHH
Confidence 22 11112222 1111 122234578999999999999887765 57889999999999 3222 22334444
Q ss_pred HHHHh--hCCCceEEEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhc
Q 046397 149 KDLLS--RRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSK 226 (901)
Q Consensus 149 k~ll~--~~~~~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (901)
+.+.. ..+..|.+++|||++-..+...-. ..+..
T Consensus 366 ~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~-------~~k~~------------------------------------- 401 (731)
T KOG0347|consen 366 KHLNEEQKNRQRQTLVFSATLTLVLQQPLSS-------SRKKK------------------------------------- 401 (731)
T ss_pred HHhhhhhcccccceEEEEEEeehhhcChhHH-------hhhcc-------------------------------------
Confidence 44442 334568999999986443221000 00000
Q ss_pred ccchhhhhhhHHHHHHHHHhhccccc------------chhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcC
Q 046397 227 QAPRKRKSQIASAVEDTLKAANFNEY------------SSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMT 294 (901)
Q Consensus 227 ~~~~~~~~~~~~~i~~~l~~~~~~~~------------~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~ 294 (901)
.+.......++..+....+.+. .....+.+-.+.+..-|+-+ +++-..-+|++||||+
T Consensus 402 ----~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~yl------yYfl~ryPGrTlVF~N 471 (731)
T KOG0347|consen 402 ----DKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYL------YYFLTRYPGRTLVFCN 471 (731)
T ss_pred ----chhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeE------EEEEeecCCceEEEec
Confidence 0000001111111111111110 00111111222222222211 1112234899999999
Q ss_pred CHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccc
Q 046397 295 GWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKET 374 (901)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~ 374 (901)
+++.+.+++-.|....+. -+++|+.|.+.+|.+.++.|+...--|+|||++|++|+|||+|.+||+
T Consensus 472 sId~vKRLt~~L~~L~i~-------p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH------- 537 (731)
T KOG0347|consen 472 SIDCVKRLTVLLNNLDIP-------PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH------- 537 (731)
T ss_pred hHHHHHHHHHHHhhcCCC-------CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE-------
Confidence 999999999999876544 348999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 375 SYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 375 ~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|-.|.....|+ ||.||+.|. ..|....|+...
T Consensus 538 -YqVPrtseiYV----------HRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 538 -YQVPRTSEIYV----------HRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred -eecCCccceeE----------ecccccccccCCCeEEEEeChH
Confidence 66666666666 999999999 679998888753
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=2e-27 Score=282.98 Aligned_cols=342 Identities=18% Similarity=0.196 Sum_probs=200.1
Q ss_pred cHHHHHHHHHHHHcCC-eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC--
Q 046397 10 AYKEKNRLLTAISQNQ-VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG-- 86 (901)
Q Consensus 10 i~~~q~~il~~i~~~~-~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g-- 86 (901)
.+++|.++++.+.+++ ++++.+|||||||.++..|++-. ..+.....++++++|||+||.|+++.+.+... .+.
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k-~l~~~ 92 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGE-RLPDV 92 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHHH-Hhccc
Confidence 6889999999999987 67778999999998766565532 12222233566677999999999987755332 110
Q ss_pred ---------------------cEeeEEEecc-------cccCCCceEEEEcHHHHHHHHhcC---------C----CCCC
Q 046397 87 ---------------------ESVGYKVRLE-------GMKGRDTRLLFCTTGILLRRLLVD---------R----NLKG 125 (901)
Q Consensus 87 ---------------------~~vGy~vr~e-------~~~~~~t~Ii~~T~g~Llr~L~~~---------~----~l~~ 125 (901)
-.+. .+... ......++|+|+|++++.+..... | .+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~-~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAIS-TLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEE-EEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 1111 11111 112245789999987776654421 0 3688
Q ss_pred ceEEEEecCcccCcchhHHHHHHHHHHhhCC---CceEEEeccCCCHH--HHHhhhCCCc-EEeeCCccccce--EEecc
Q 046397 126 VTHVIVDEVHERGMNEDFLLIVLKDLLSRRP---ELRLVLMSATLDAE--LFSSYFGGAT-VINIPGFTYPVR--THFLE 197 (901)
Q Consensus 126 ~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~---~~kiIlmSATl~~~--~f~~yf~~~~-~i~i~gr~~pV~--~~~l~ 197 (901)
+++||+||||...-..+.+..+++.+. ..+ +.|+++||||++.+ .+...|...+ .+.+.......+ .+|..
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~ 250 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVP 250 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEe
Confidence 999999999943333333333333321 122 36899999999754 2222232111 111110000000 00000
Q ss_pred chhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHH
Q 046397 198 DILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVL 277 (901)
Q Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll 277 (901)
. ..... +. .++. .+
T Consensus 251 ----------v----------------------~~e~K----l~-----------------------------~lv~-~L 264 (844)
T TIGR02621 251 ----------P----------------------SDEKF----LS-----------------------------TMVK-EL 264 (844)
T ss_pred ----------c----------------------ChHHH----HH-----------------------------HHHH-HH
Confidence 0 00000 00 0111 11
Q ss_pred HHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHH-----hhcCCCCC----CC-----
Q 046397 278 CYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQR-----LIFDEPES----GV----- 343 (901)
Q Consensus 278 ~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~-----~i~~~f~~----g~----- 343 (901)
..+. ....+++||||+++++++.+++.|.+.+. ..+||.|++.+|. ++++.|++ |.
T Consensus 265 ~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~---------~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~ 334 (844)
T TIGR02621 265 NLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF---------ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQ 334 (844)
T ss_pred HHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC---------eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccc
Confidence 1122 23468999999999999999999987532 5899999999999 77888876 43
Q ss_pred --eEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCC-Cce-EEcCCcchh
Q 046397 344 --RKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQP-GEC-YRLYPRCVY 419 (901)
Q Consensus 344 --~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~-G~c-~~L~s~~~~ 419 (901)
.+|||||+++|+||||+. ++||. ++. ...+|.||+||+||.+. |.+ +.+++.+..
T Consensus 335 ~g~~ILVATdVaerGLDId~-d~VI~--------d~a------------P~esyIQRiGRtgR~G~~~~~~i~vv~~~~~ 393 (844)
T TIGR02621 335 QGTVYLVCTSAGEVGVNISA-DHLVC--------DLA------------PFESMQQRFGRVNRFGELQACQIAVVHLDLG 393 (844)
T ss_pred ccceEEeccchhhhcccCCc-ceEEE--------CCC------------CHHHHHHHhcccCCCCCCCCceEEEEeeccC
Confidence 689999999999999997 66664 322 23577899999999853 322 333322110
Q ss_pred hhc-ccCCCCcccccCccchhhhhhccCCCCHHHH
Q 046397 420 DAF-AEYQLPEILRTPLQSLCLQIKSLRLGTIAGF 453 (901)
Q Consensus 420 ~~l-~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~f 453 (901)
..- ...--||+++..+..+.+..+..+..++..|
T Consensus 394 ~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 394 KDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 100 1111356666555555544444444444444
No 61
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.2e-28 Score=251.54 Aligned_cols=309 Identities=22% Similarity=0.261 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
+.|++.++....+++++.-+..|+|||-++..++++..-... ....-+|+.|+|+||.|+.+ +..+++.-.|..|-.
T Consensus 110 PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--~~IQ~~ilVPtrelALQtSq-vc~~lskh~~i~vmv 186 (459)
T KOG0326|consen 110 PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--NVIQAIILVPTRELALQTSQ-VCKELSKHLGIKVMV 186 (459)
T ss_pred CccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--cceeEEEEeecchhhHHHHH-HHHHHhcccCeEEEE
Confidence 357888888999999999999999999999999999764322 22333444499999999764 445665555543322
Q ss_pred EE-----eccc-ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEe
Q 046397 92 KV-----RLEG-MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLM 163 (901)
Q Consensus 92 ~v-----r~e~-~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlm 163 (901)
.+ +.+- ......+++++|||.+++.....- .+++...+|+|||+.. +..||-..+ ..++. ..++.++++.
T Consensus 187 ttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl-Ls~~F~~~~-e~li~~lP~~rQilly 264 (459)
T KOG0326|consen 187 TTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL-LSVDFQPIV-EKLISFLPKERQILLY 264 (459)
T ss_pred ecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh-hchhhhhHH-HHHHHhCCccceeeEE
Confidence 21 1111 123457899999999999776554 7999999999999952 555655544 44444 4456789999
Q ss_pred ccCCCH--HHHH-hhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 164 SATLDA--ELFS-SYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 164 SATl~~--~~f~-~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
|||.+. ..|. +|+..+ .++..+++. ...| ..+....+
T Consensus 265 SATFP~tVk~Fm~~~l~kP-----------y~INLM~eL-tl~G----------------------------vtQyYafV 304 (459)
T KOG0326|consen 265 SATFPLTVKGFMDRHLKKP-----------YEINLMEEL-TLKG----------------------------VTQYYAFV 304 (459)
T ss_pred ecccchhHHHHHHHhccCc-----------ceeehhhhh-hhcc----------------------------hhhheeee
Confidence 999854 2333 333322 222222110 0000 00000001
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL 320 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v 320 (901)
++ .-..+.+..++....-...+|||++...++.++..+.+.++. .
T Consensus 305 ~e----------------------------~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGys-------c 349 (459)
T KOG0326|consen 305 EE----------------------------RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS-------C 349 (459)
T ss_pred ch----------------------------hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccch-------h
Confidence 00 111223444444455678899999999999999999987654 4
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
++.|+.|.++.|.++|..|++|.++.+|||+.+.+||||++|++||+ ||.+.+.++| .||+|
T Consensus 350 yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN--------FDfpk~aEtY----------LHRIG 411 (459)
T KOG0326|consen 350 YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FDFPKNAETY----------LHRIG 411 (459)
T ss_pred hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe--------cCCCCCHHHH----------HHHcc
Confidence 58899999999999999999999999999999999999999999999 7776665554 59999
Q ss_pred hcCCC-CCCceEEcCCcch
Q 046397 401 RAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 401 RAGR~-~~G~c~~L~s~~~ 418 (901)
|+||- ..|..+.|.+-++
T Consensus 412 RsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 412 RSGRFGHLGLAINLITYED 430 (459)
T ss_pred CCccCCCcceEEEEEehhh
Confidence 99999 4799999987543
No 62
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=5.2e-27 Score=272.96 Aligned_cols=445 Identities=19% Similarity=0.207 Sum_probs=284.9
Q ss_pred HHHHHHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-----CCCeeEEEEecchHHHHHHHHHHHHHHhC---
Q 046397 12 KEKNRLLTAI-SQNQVVIISGETGCGKTTQVPQFILESEITSV-----RGAVCSIICTQPRRISAMSVSERVASERG--- 82 (901)
Q Consensus 12 ~~q~~il~~i-~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-----~~~~~~IlvtqPrr~la~qva~rva~e~~--- 82 (901)
..|.++.+.+ ..+.+.+||||||||||-.+.+.|+...-+.. .....+|+++.|.++||.++++.+.+.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g 192 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG 192 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc
Confidence 4566666665 46789999999999999999999987664311 11346899999999999999999977764
Q ss_pred CccCcEeeEEEecccccCCCceEEEEcHHHH---HHHHhcCC-CCCCceEEEEecCc----ccCcchhHHHHHHHHHHh-
Q 046397 83 EKLGESVGYKVRLEGMKGRDTRLLFCTTGIL---LRRLLVDR-NLKGVTHVIVDEVH----ERGMNEDFLLIVLKDLLS- 153 (901)
Q Consensus 83 ~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~L---lr~L~~~~-~l~~~~~IIIDE~H----eR~~~~d~ll~~lk~ll~- 153 (901)
..+++..|-.--.... -..++|+++||+.. -|.-..+. .++.+.+|||||+| +||.--+.+...+.+...
T Consensus 193 i~v~ELTGD~ql~~te-i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 193 ISVRELTGDTQLTKTE-IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred ceEEEecCcchhhHHH-HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 2233333311111111 24689999999854 33333332 57889999999999 688777766665554444
Q ss_pred hCCCceEEEeccCC-CHHHHHhhhCC---CcEEeeCCccccc--eEEeccchhhhcccccCCCCCCcchhhHHHhHhhcc
Q 046397 154 RRPELRLVLMSATL-DAELFSSYFGG---ATVINIPGFTYPV--RTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQ 227 (901)
Q Consensus 154 ~~~~~kiIlmSATl-~~~~f~~yf~~---~~~i~i~gr~~pV--~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (901)
....+|+|++|||+ |-++++.|++. ..++...++-.|| +..++- ++..
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG-------~k~~------------------- 325 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIG-------IKGK------------------- 325 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEe-------eecc-------------------
Confidence 34578999999998 77899999985 3355555544444 333321 1100
Q ss_pred cchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHH
Q 046397 228 APRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQ 307 (901)
Q Consensus 228 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 307 (901)
...+..+.+++.. .++++..+ ..+.+++|||+++.+..+.++.|.
T Consensus 326 ----~~~~~~~~~d~~~----------------------------~~kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~ 370 (1230)
T KOG0952|consen 326 ----KNRQQKKNIDEVC----------------------------YDKVVEFL---QEGHQVLVFVHSRNETIRTAKKLR 370 (1230)
T ss_pred ----cchhhhhhHHHHH----------------------------HHHHHHHH---HcCCeEEEEEecChHHHHHHHHHH
Confidence 0000011111111 11122222 346799999999999999999887
Q ss_pred hCccC--------C-CCCc-------eEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCc
Q 046397 308 ANRIL--------G-DPTR-------VLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKA 371 (901)
Q Consensus 308 ~~~~~--------~-~~~~-------~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~ 371 (901)
+.... . ...+ ..+..+|+||..++|..+.+.|..|.++|++||..++.|+++|+--++|-
T Consensus 371 ~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK---- 446 (1230)
T KOG0952|consen 371 ERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK---- 446 (1230)
T ss_pred HHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----
Confidence 53211 1 1112 56778999999999999999999999999999999999999999888873
Q ss_pred cccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcc---hhhhcccCCCC---------------cc
Q 046397 372 KETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRC---VYDAFAEYQLP---------------EI 430 (901)
Q Consensus 372 k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~---~~~~l~~~~~P---------------Ei 430 (901)
....||+..+...- .+-....|..|||||.+ .|..+.+-+++ .|.+|-..+.| ||
T Consensus 447 GT~~ydsskg~f~d----lgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi 522 (1230)
T KOG0952|consen 447 GTQVYDSSKGSFVD----LGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEI 522 (1230)
T ss_pred CCcccccccCceee----ehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhhe
Confidence 34558887643322 24557789999999993 67777776554 34444433332 33
Q ss_pred cccCccchhhhhhccCC--------CCHHHHh--hhhc--CCChH----HHHHHHHHHHHHcCCc--cCC-C--ccchhh
Q 046397 431 LRTPLQSLCLQIKSLRL--------GTIAGFL--SRAL--QSPEL----LAVQNAIEYLKIIGAL--DHN-E--ELTVLG 489 (901)
Q Consensus 431 ~r~~L~~~~L~~k~l~~--------~~~~~fl--~~~l--~pP~~----~~v~~al~~L~~~gal--d~~-~--~lT~lG 489 (901)
--..+.++=-.+..|+. .++..+= ...+ +|-.. +-+..++..|.....+ |.. + ..|++|
T Consensus 523 ~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlG 602 (1230)
T KOG0952|consen 523 SLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLG 602 (1230)
T ss_pred eeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchh
Confidence 22211111111111110 0111110 0111 11111 1344556666555433 332 2 689999
Q ss_pred hhhhcCCCChHHHHHHHHhhh-cCChHHHHHHHHhhcC
Q 046397 490 QYLAMLPMEPKLGKMLILGAI-FNCLEPVLTIVAGLSV 526 (901)
Q Consensus 490 ~~la~lpl~p~~~k~ll~~~~-~~cl~~~l~iaa~ls~ 526 (901)
|.++.+.+.-+..+.++.... |--.|++|.+++.-+.
T Consensus 603 R~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeE 640 (1230)
T KOG0952|consen 603 RVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEE 640 (1230)
T ss_pred hhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHh
Confidence 999999999999999999887 7788999988876543
No 63
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=258.18 Aligned_cols=317 Identities=22% Similarity=0.269 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHh-----hcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEIT-----SVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~-----~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
++.|.++++....+++|+=.+-||||||-++..+.+.+... .+.|+-..|+| |+|++|.|+..... .++...
T Consensus 247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv--PTrela~Qi~~eaK-kf~K~y 323 (731)
T KOG0339|consen 247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV--PTRELASQIFSEAK-KFGKAY 323 (731)
T ss_pred CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe--ccHHHHHHHHHHHH-Hhhhhc
Confidence 34577888888999999999999999999998888877643 24444444555 99999999886553 333333
Q ss_pred CcEe--eEEE--ecc--cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCc
Q 046397 86 GESV--GYKV--RLE--GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPEL 158 (901)
Q Consensus 86 g~~v--Gy~v--r~e--~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ 158 (901)
|..+ -|+- .++ +.....+.|+|||||+|+.++.-.. ++.+++++|+||++ |..+..|...+-...-..+|+-
T Consensus 324 gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdr 402 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDR 402 (731)
T ss_pred cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcc
Confidence 3221 1221 001 1112568999999999999886555 89999999999999 5566666655444444578999
Q ss_pred eEEEeccCCCHH--HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhh
Q 046397 159 RLVLMSATLDAE--LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQI 236 (901)
Q Consensus 159 kiIlmSATl~~~--~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (901)
|.|++|||.... .+.+-|-.-|+-.+.|. |... -+|+....
T Consensus 403 QtllFsaTf~~kIe~lard~L~dpVrvVqg~---vgea-n~dITQ~V--------------------------------- 445 (731)
T KOG0339|consen 403 QTLLFSATFKKKIEKLARDILSDPVRVVQGE---VGEA-NEDITQTV--------------------------------- 445 (731)
T ss_pred eEEEeeccchHHHHHHHHHHhcCCeeEEEee---hhcc-ccchhhee---------------------------------
Confidence 999999998543 44443333344333331 0000 00000000
Q ss_pred HHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCC
Q 046397 237 ASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPT 316 (901)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~ 316 (901)
..+ .-+...+.-+++|+..-...|++|||++-..+.+.++..|.-.+
T Consensus 446 -~V~--------------------------~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~------ 492 (731)
T KOG0339|consen 446 -SVC--------------------------PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKG------ 492 (731)
T ss_pred -eec--------------------------cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcccc------
Confidence 000 00011223356777777788999999999999999999987543
Q ss_pred ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHH
Q 046397 317 RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 317 ~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 396 (901)
+.|..+||++.+.+|.+++..|+.+...|+++|+++.+|+|||++..||+ ||....+..+.
T Consensus 493 -~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdtht---------- 553 (731)
T KOG0339|consen 493 -FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTHT---------- 553 (731)
T ss_pred -ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------ccccchhHHHH----------
Confidence 55889999999999999999999999999999999999999999999999 88888777666
Q ss_pred HHhhhcCCCC-CCceEEcCCcchhh
Q 046397 397 QRRGRAGRVQ-PGECYRLYPRCVYD 420 (901)
Q Consensus 397 QR~GRAGR~~-~G~c~~L~s~~~~~ 420 (901)
||+||+||.+ .|..|.|.|+.+-+
T Consensus 554 hrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 554 HRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred HHhhhcccccccceeeEEechhhHH
Confidence 9999999994 69999999986543
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=255.16 Aligned_cols=321 Identities=18% Similarity=0.249 Sum_probs=210.4
Q ss_pred cHHHHHHHHHHHH---------cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAIS---------QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 10 i~~~q~~il~~i~---------~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
.|+.|.+++..+. ..+++.|.+|||||||.++.++|...+..+. -...+.+|+.|+|.|+.|++..+...
T Consensus 160 ~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 160 LFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-VKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred ccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-ccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 4556777887773 2568999999999999999999998764332 22345555559999999999988554
Q ss_pred hCCccCcEeeEEEe-----ccc--ccCC----CceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcc---hhHH
Q 046397 81 RGEKLGESVGYKVR-----LEG--MKGR----DTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMN---EDFL 144 (901)
Q Consensus 81 ~~~~~g~~vGy~vr-----~e~--~~~~----~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~---~d~l 144 (901)
.. ..|-.|+--.. .|. ..+. ..+|+|+|||+|.++|.+.+ .|+++.++||||++. -++ .+++
T Consensus 239 ~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR-ll~qsfQ~Wl 316 (620)
T KOG0350|consen 239 NS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR-LLDQSFQEWL 316 (620)
T ss_pred cc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH-HHHHHHHHHH
Confidence 42 33434432211 111 1112 34899999999999998765 799999999999993 111 1111
Q ss_pred HHHH------------HHHHh-------------------hCCCceEEEeccCC--CHHHHHhhhCCCc-EEeeCCcccc
Q 046397 145 LIVL------------KDLLS-------------------RRPELRLVLMSATL--DAELFSSYFGGAT-VINIPGFTYP 190 (901)
Q Consensus 145 l~~l------------k~ll~-------------------~~~~~kiIlmSATl--~~~~f~~yf~~~~-~i~i~gr~~p 190 (901)
..++ ..++. ..+++.-++.|||+ ++..+.++--+.| ++.+.+.
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~--- 393 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP--- 393 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc---
Confidence 1111 11111 12233456677776 5556655543333 3333321
Q ss_pred ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCch
Q 046397 191 VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGF 270 (901)
Q Consensus 191 V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~ 270 (901)
.-.. |.+.+ .+....- ..+.
T Consensus 394 ~~~r----------yslp~-----------------------------~l~~~~v---------------------v~~~ 413 (620)
T KOG0350|consen 394 LIGR----------YSLPS-----------------------------SLSHRLV---------------------VTEP 413 (620)
T ss_pred ccee----------eecCh-----------------------------hhhhcee---------------------eccc
Confidence 0000 11000 0000000 0000
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHH-hCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEe
Q 046397 271 NLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQ-ANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLA 349 (901)
Q Consensus 271 ~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~-~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIva 349 (901)
.+....+.++.......++|+|+++.+.+.+++..|. ..+. .++.+-.+.|+++...|.+.++.|..|.+.|+||
T Consensus 414 ~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~----~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIc 489 (620)
T KOG0350|consen 414 KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS----DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLIC 489 (620)
T ss_pred ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc----ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEe
Confidence 0001123344444567799999999999999999997 3221 2334446899999999999999999999999999
Q ss_pred cchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcch
Q 046397 350 TNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 350 TniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
++++.+|||+.+|+.||+ ||++.....|+ ||+||++|. +.|.||.|.++..
T Consensus 490 SD~laRGiDv~~v~~VIN--------Yd~P~~~ktyV----------HR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 490 SDALARGIDVNDVDNVIN--------YDPPASDKTYV----------HRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred hhhhhcCCcccccceEee--------cCCCchhhHHH----------HhhcccccccCCceEEEeecccc
Confidence 999999999999999999 99988766655 999999999 6899999987654
No 65
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=8e-26 Score=279.93 Aligned_cols=382 Identities=16% Similarity=0.180 Sum_probs=226.4
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+....||.++...+..+ +++|++|||+|||.++...+...+ . ..+ .+++++.|++.|+.|+++.+...++....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l-~-~~~--~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERL-H-KKG--GKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHH-H-hCC--CeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 466788999999988776 789999999999998877777655 2 222 35666779999999999999877664311
Q ss_pred cEeeEEEeccc----ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 87 ESVGYKVRLEG----MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 87 ~~vGy~vr~e~----~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
..+.+.-.... ....+.+|+|+||+++...+.... .+.++++|||||||+- ........+++......+..+++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~-~~~~~~~~i~~~~~~~~~~~~il 166 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRA-VGNYAYVYIAERYHEDAKNPLVL 166 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccc-cccccHHHHHHHHHhcCCCCEEE
Confidence 11122111100 011356899999999988876655 6788999999999953 22222223344444555677899
Q ss_pred EeccCCC--HHHHHhhhCC--CcEEeeCCccc--------cceEEecc----ch-----------hh-------hccccc
Q 046397 162 LMSATLD--AELFSSYFGG--ATVINIPGFTY--------PVRTHFLE----DI-----------LD-------MTGYRL 207 (901)
Q Consensus 162 lmSATl~--~~~f~~yf~~--~~~i~i~gr~~--------pV~~~~l~----d~-----------~~-------~~~~~~ 207 (901)
+||||+. .+.+.....+ ...+.+..+.. +.+..++. +. ++ ..+...
T Consensus 167 ~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~ 246 (773)
T PRK13766 167 GLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIV 246 (773)
T ss_pred EEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 9999983 2333322221 11222221111 11111110 00 00 001110
Q ss_pred CCCCCCc--chhh--HHHhHhhcccch--hhhhhhH----------H--------HHHHHHHhhccccc----ch-----
Q 046397 208 TPYNQID--DYGQ--EKMWKMSKQAPR--KRKSQIA----------S--------AVEDTLKAANFNEY----SS----- 254 (901)
Q Consensus 208 ~~~~~~~--~~~~--~~~~~~~~~~~~--~~~~~~~----------~--------~i~~~l~~~~~~~~----~~----- 254 (901)
....... +... ............ .....+. . .+...+........ ..
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l 326 (773)
T PRK13766 247 SISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRL 326 (773)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHH
Confidence 0000000 0000 000000000000 0000000 0 00000000000000 00
Q ss_pred -------hhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecC--
Q 046397 255 -------QTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHG-- 325 (901)
Q Consensus 255 -------~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs-- 325 (901)
.....+..........+.+.+++..+.....++++|||++++..+..+.+.|...+.. ...+||
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~-------~~~~~g~~ 399 (773)
T PRK13766 327 VEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK-------AVRFVGQA 399 (773)
T ss_pred HhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCc-------eEEEEccc
Confidence 0000111112233445666777777766677899999999999999999999765432 334555
Q ss_pred ------CCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHh
Q 046397 326 ------SMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRR 399 (901)
Q Consensus 326 ------~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 399 (901)
+|+..+|.++++.|+.|..+|+|||+++++|+|+|++++||. ||++.+.. .+.||+
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~s~~----------r~iQR~ 461 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVPSEI----------RSIQRK 461 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCCCHH----------HHHHHh
Confidence 499999999999999999999999999999999999999998 88765444 556999
Q ss_pred hhcCCCCCCceEEcCCcchh
Q 046397 400 GRAGRVQPGECYRLYPRCVY 419 (901)
Q Consensus 400 GRAGR~~~G~c~~L~s~~~~ 419 (901)
||+||.++|.+|.|+++...
T Consensus 462 GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 462 GRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred cccCcCCCCEEEEEEeCCCh
Confidence 99999999999999886543
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=1.3e-25 Score=263.39 Aligned_cols=317 Identities=14% Similarity=0.102 Sum_probs=197.9
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
...+.+|.+.+..+..++..++++|||+|||..+...+ ...+... .++++|++||++|+.|+.+++.+........
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~---~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENY---EGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcC---CCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 56778999999888888889999999999997665432 2222222 2256667799999999999997654322111
Q ss_pred EeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEEeccC
Q 046397 88 SVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVLMSAT 166 (901)
Q Consensus 88 ~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIlmSAT 166 (901)
..+ +..........+|+|+|++.+.+.. ...+.++++|||||||+- ..+-+ ..++...+ ..++++||||
T Consensus 189 ~~~--i~~g~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~~--~~~~~----~~il~~~~~~~~~lGLTAT 258 (501)
T PHA02558 189 MHK--IYSGTAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHLF--TGKSL----TSIITKLDNCKFKFGLTGS 258 (501)
T ss_pred eeE--EecCcccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhcc--cchhH----HHHHHhhhccceEEEEecc
Confidence 111 1111122245789999999988643 225789999999999963 23323 33333333 3568999999
Q ss_pred CCHH-----HHHhhhCCCcEEeeC-------CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 167 LDAE-----LFSSYFGGATVINIP-------GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 167 l~~~-----~f~~yf~~~~~i~i~-------gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
+... .+..+|++.. ..+. |...+++...+.- .+ + . ....... ..
T Consensus 259 p~~~~~~~~~~~~~fG~i~-~~v~~~~li~~g~l~~~~~~~v~~-----~~--~------~---~~~~~~~-------~~ 314 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIF-KPVTTSQLMEEGQVTDLKINSIFL-----RY--P------D---EDRVKLK-------GE 314 (501)
T ss_pred CCCccccHHHHHHhhCCce-EEecHHHHHhCCCcCCceEEEEec-----cC--C------H---HHhhhhc-------cc
Confidence 8432 1234555321 1111 1111111110000 00 0 0 0000000 00
Q ss_pred hhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC
Q 046397 235 QIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD 314 (901)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 314 (901)
.....+..... +.....+|..++..+. ..+.++|||+...++++.+++.|...+.
T Consensus 315 ~~~~~~~~l~~--------------------~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~g~--- 369 (501)
T PHA02558 315 DYQEEIKYITS--------------------HTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKVYD--- 369 (501)
T ss_pred chHHHHHHHhc--------------------cHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHcCC---
Confidence 00000000000 0011223444443333 3457899999999999999999987543
Q ss_pred CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEec-chhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHh
Q 046397 315 PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLAT-NIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTV 393 (901)
Q Consensus 315 ~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaT-niaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 393 (901)
.+..+||+++.++|..+++.|+.|...||||| +++++|+|+|+++.||. ++|.. |+.
T Consensus 370 ----~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~p~~----------s~~ 427 (501)
T PHA02558 370 ----KVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AHPSK----------SKI 427 (501)
T ss_pred ----CEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ecCCc----------chh
Confidence 36789999999999999999999999999998 89999999999999997 44433 455
Q ss_pred cHHHHhhhcCCCCCCc
Q 046397 394 SAQQRRGRAGRVQPGE 409 (901)
Q Consensus 394 ~~~QR~GRAGR~~~G~ 409 (901)
.+.||+||+||..+|+
T Consensus 428 ~~~QriGR~~R~~~~K 443 (501)
T PHA02558 428 IVLQSIGRVLRKHGSK 443 (501)
T ss_pred hhhhhhhccccCCCCC
Confidence 6779999999997775
No 67
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=9.6e-27 Score=248.80 Aligned_cols=301 Identities=20% Similarity=0.234 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC----CeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG----AVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~----~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
..|+..++.+.++++++.-|.||||||.++.+++++.++..... .....++++|||+||.|++..+.+...
T Consensus 44 lIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~----- 118 (569)
T KOG0346|consen 44 LIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVE----- 118 (569)
T ss_pred hhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHH-----
Confidence 45788899999999999999999999999999999988764321 123344445999999999988754421
Q ss_pred EeeEEEecc------------cccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcc---cCcchhHHHHHHHH
Q 046397 88 SVGYKVRLE------------GMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHE---RGMNEDFLLIVLKD 150 (901)
Q Consensus 88 ~vGy~vr~e------------~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~He---R~~~~d~ll~~lk~ 150 (901)
.++-.+|.- ......++|+|+||+.+++++..+. .+..++++|+|||+- .|...| ++.
T Consensus 119 ~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeed-----lk~ 193 (569)
T KOG0346|consen 119 YCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEED-----LKK 193 (569)
T ss_pred HHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHH-----HHH
Confidence 111111110 1123568999999999999998887 688899999999993 233333 555
Q ss_pred HHhhCC-CceEEEeccCCC--HHHHHhhhCCCcE-EeeCCcccc----ceEEeccchhhhcccccCCCCCCcchhhHHHh
Q 046397 151 LLSRRP-ELRLVLMSATLD--AELFSSYFGGATV-INIPGFTYP----VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMW 222 (901)
Q Consensus 151 ll~~~~-~~kiIlmSATl~--~~~f~~yf~~~~~-i~i~gr~~p----V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 222 (901)
+....| ..|-++||||++ ...+...|-..|+ +.+....-| +..+++.
T Consensus 194 l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~------------------------- 248 (569)
T KOG0346|consen 194 LRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVK------------------------- 248 (569)
T ss_pred HHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEE-------------------------
Confidence 555444 568999999994 4567776654443 333322222 1111110
Q ss_pred HhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHH
Q 046397 223 KMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSL 302 (901)
Q Consensus 223 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l 302 (901)
+-..+....+...+.-.--.|++|||+++.+.+.++
T Consensus 249 --------------------------------------------cse~DKflllyallKL~LI~gKsliFVNtIdr~YrL 284 (569)
T KOG0346|consen 249 --------------------------------------------CSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRL 284 (569)
T ss_pred --------------------------------------------eccchhHHHHHHHHHHHHhcCceEEEEechhhhHHH
Confidence 000000000111111123479999999999999999
Q ss_pred HHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecc-------------------------------
Q 046397 303 NDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATN------------------------------- 351 (901)
Q Consensus 303 ~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTn------------------------------- 351 (901)
.-.|+..++.+. .++|.||..-|..|++.|..|...|||||+
T Consensus 285 kLfLeqFGiksc-------iLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~ 357 (569)
T KOG0346|consen 285 KLFLEQFGIKSC-------ILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKL 357 (569)
T ss_pred HHHHHHhCcHhh-------hhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccccccc
Confidence 999988776543 789999999999999999999999999999
Q ss_pred ----hhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCc
Q 046397 352 ----IAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPR 416 (901)
Q Consensus 352 ----iaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~ 416 (901)
-..+|||+..|..||+ ||.|....+|+ ||+||++|. .+|....+...
T Consensus 358 D~E~GVsRGIDF~~V~~VlN--------FD~P~t~~sYI----------HRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 358 DKESGVSRGIDFHHVSNVLN--------FDFPETVTSYI----------HRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred Cchhchhccccchheeeeee--------cCCCCchHHHH----------HhccccccCCCCCceEEEecc
Confidence 2357999999999999 88888766555 999999999 68988777654
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=2.2e-25 Score=250.38 Aligned_cols=303 Identities=17% Similarity=0.180 Sum_probs=181.5
Q ss_pred HHHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC-------
Q 046397 13 EKNRLLTAISQNQ--VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE------- 83 (901)
Q Consensus 13 ~q~~il~~i~~~~--~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~------- 83 (901)
+|.+.++++.+++ +++|++|||||||.++..+++.. . . +.+++.|+++|+.++++++...+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~-~--~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----E-N--DTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----C-C--CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5888999998776 58999999999999888877742 1 1 2355559999999999998776521
Q ss_pred ccCcEeeEEE----ec----------c--------cccCCCceEEEEcHHHHHHHHhc---CC------CCCCceEEEEe
Q 046397 84 KLGESVGYKV----RL----------E--------GMKGRDTRLLFCTTGILLRRLLV---DR------NLKGVTHVIVD 132 (901)
Q Consensus 84 ~~g~~vGy~v----r~----------e--------~~~~~~t~Ii~~T~g~Llr~L~~---~~------~l~~~~~IIID 132 (901)
.+....|-.. .. + ......+.|+++||++|...+.. ++ .+.++++||+|
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 1111112100 00 0 00012467888889888765432 22 26789999999
Q ss_pred cCcccCcchh-HHH---HHHHHHHhhCCCceEEEeccCCCHHHHH---hh-hCCCcEEeeCCccccceEEeccchh---h
Q 046397 133 EVHERGMNED-FLL---IVLKDLLSRRPELRLVLMSATLDAELFS---SY-FGGATVINIPGFTYPVRTHFLEDIL---D 201 (901)
Q Consensus 133 E~HeR~~~~d-~ll---~~lk~ll~~~~~~kiIlmSATl~~~~f~---~y-f~~~~~i~i~gr~~pV~~~~l~d~~---~ 201 (901)
|+|..+.... .++ ..+..+.......++|+||||++..... +. +-+.+++.++|+.|.-..+ +++. .
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~ 230 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN--PELEADNK 230 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC--hhhhcccc
Confidence 9998654332 222 2222222223357999999999875332 22 1246777888774321100 0000 0
Q ss_pred hcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHH---HH
Q 046397 202 MTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYV---LC 278 (901)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~l---l~ 278 (901)
..+|+..-. .+. ..... ......+.+..+ +.
T Consensus 231 ~~~~~~~~~-~i~-----------~~~~~----------------------------------~~~~~~~~l~~l~~~i~ 264 (357)
T TIGR03158 231 TQSFRPVLP-PVE-----------LELIP----------------------------------APDFKEEELSELAEEVI 264 (357)
T ss_pred ccccceecc-ceE-----------EEEEe----------------------------------CCchhHHHHHHHHHHHH
Confidence 000000000 000 00000 000000111111 12
Q ss_pred HHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccC
Q 046397 279 YICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSIT 358 (901)
Q Consensus 279 ~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGId 358 (901)
...+...++++||||+++.+++.+++.|.+.+. .+.+..+||.++..+|.++. +..|+|||+++|+|||
T Consensus 265 ~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~-----~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiD 333 (357)
T TIGR03158 265 ERFRQLPGERGAIILDSLDEVNRLSDLLQQQGL-----GDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVD 333 (357)
T ss_pred HHHhccCCCeEEEEECCHHHHHHHHHHHhhhCC-----CceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccC
Confidence 222234567999999999999999999987521 23467899999999987654 5789999999999999
Q ss_pred CCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcC
Q 046397 359 INDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAG 403 (901)
Q Consensus 359 Ip~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAG 403 (901)
||++ +|| +++ .+..+|.||+||+|
T Consensus 334 i~~~-~vi---------~~p-----------~~~~~yiqR~GR~g 357 (357)
T TIGR03158 334 FKRD-WLI---------FSA-----------RDAAAFWQRLGRLG 357 (357)
T ss_pred CCCc-eEE---------ECC-----------CCHHHHhhhcccCC
Confidence 9987 555 221 24557889999998
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.93 E-value=5.9e-25 Score=267.68 Aligned_cols=329 Identities=22% Similarity=0.234 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
...+|+||.+.++.+.++++|||+.+||||||..+.++|+++++..... +.+++-|+++||...++++.+..... +
T Consensus 68 ~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a---~AL~lYPtnALa~DQ~~rl~~~~~~~-~ 143 (851)
T COG1205 68 IERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---RALLLYPTNALANDQAERLRELISDL-P 143 (851)
T ss_pred cccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc---cEEEEechhhhHhhHHHHHHHHHHhC-C
Confidence 3458999999999999999999999999999999999999999865443 45555599999999999998776433 3
Q ss_pred cEeeEEEe-cc-------cccCCCceEEEEcHHHHHHHHhcCC-----CCCCceEEEEecCc-ccCcchhHHHHHHHHHH
Q 046397 87 ESVGYKVR-LE-------GMKGRDTRLLFCTTGILLRRLLVDR-----NLKGVTHVIVDEVH-ERGMNEDFLLIVLKDLL 152 (901)
Q Consensus 87 ~~vGy~vr-~e-------~~~~~~t~Ii~~T~g~Llr~L~~~~-----~l~~~~~IIIDE~H-eR~~~~d~ll~~lk~ll 152 (901)
..|+..+- .+ ......++|++++|.||-..+.... .++++.+|||||+| -||...--+..++|+++
T Consensus 144 ~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~ 223 (851)
T COG1205 144 GKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLL 223 (851)
T ss_pred CcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHH
Confidence 23332220 11 1123578999999999988665443 47889999999999 47776665556666665
Q ss_pred hhC----CCceEEEeccCC-CHH-HHHhhhCCCcEEeeCCccccceEE--eccchhhhcccccCCCCCCcchhhHHHhHh
Q 046397 153 SRR----PELRLVLMSATL-DAE-LFSSYFGGATVINIPGFTYPVRTH--FLEDILDMTGYRLTPYNQIDDYGQEKMWKM 224 (901)
Q Consensus 153 ~~~----~~~kiIlmSATl-~~~-~f~~yf~~~~~i~i~gr~~pV~~~--~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (901)
... .++++|.+|||+ ++. ...++|+..-...+.+-..|-... .+.+. ... +.
T Consensus 224 ~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p----------~~~---------~~- 283 (851)
T COG1205 224 RRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREP----------PIR---------EL- 283 (851)
T ss_pred HHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCC----------cch---------hh-
Confidence 543 378999999999 444 444566532222144333332221 11110 000 00
Q ss_pred hcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHH
Q 046397 225 SKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLND 304 (901)
Q Consensus 225 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~ 304 (901)
... + .... ......++.... ..+-++|||+.++..++.+..
T Consensus 284 -------~~~-~---r~s~--------------------------~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~ 324 (851)
T COG1205 284 -------AES-I---RRSA--------------------------LAELATLAALLV--RNGIQTLVFFRSRKQVELLYL 324 (851)
T ss_pred -------hhh-c---ccch--------------------------HHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhh
Confidence 000 0 0000 000111111111 235689999999999999873
Q ss_pred HHHhCccC-CCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcc
Q 046397 305 KLQANRIL-GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTS 383 (901)
Q Consensus 305 ~L~~~~~~-~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~ 383 (901)
.....-.. +......+..++++++.++|.++...++.|+.+++++||.+|-||||.++..||.+|+|-
T Consensus 325 ~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~----------- 393 (851)
T COG1205 325 SPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPG----------- 393 (851)
T ss_pred chhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCC-----------
Confidence 33221110 101123477899999999999999999999999999999999999999999999988774
Q ss_pred ccccccccHhcHHHHhhhcCCCC-CCceEEcCC
Q 046397 384 CLLPSWISTVSAQQRRGRAGRVQ-PGECYRLYP 415 (901)
Q Consensus 384 ~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L~s 415 (901)
.|..+++||.|||||.. .+..+..+.
T Consensus 394 ------~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 394 ------VSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ------chHHHHHHhhhhccCCCCCceEEEEeC
Confidence 25568899999999995 454444443
No 70
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.93 E-value=9.8e-26 Score=249.77 Aligned_cols=318 Identities=19% Similarity=0.294 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh----CCccC
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER----GEKLG 86 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~----~~~~g 86 (901)
.+.|...++++..+=++||.+..|+|||..+....++.+-. +.....++++.|||++|+|+.+.|.... |..+.
T Consensus 49 tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~--~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~cs 126 (980)
T KOG4284|consen 49 TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS--RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCS 126 (980)
T ss_pred CchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc--ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceE
Confidence 35688889999999999999999999998888777776632 2334455555699999999999886553 23333
Q ss_pred cEee-EEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCc-eEEEe
Q 046397 87 ESVG-YKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPEL-RLVLM 163 (901)
Q Consensus 87 ~~vG-y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~-kiIlm 163 (901)
..+| -.+..+...-..++|+++|||.++.....+. +.+.++++|+||++.. +++..+..-+..++...|.. +++.+
T Consensus 127 vfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL-~~t~sfq~~In~ii~slP~~rQv~a~ 205 (980)
T KOG4284|consen 127 VFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKL-MDTESFQDDINIIINSLPQIRQVAAF 205 (980)
T ss_pred EEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhh-hchhhHHHHHHHHHHhcchhheeeEE
Confidence 3333 2223333444678999999999999877665 7899999999999953 56666666677777776654 69999
Q ss_pred ccCCCH---HHHHhhhCCCcEEeeCCcc---ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhH
Q 046397 164 SATLDA---ELFSSYFGGATVINIPGFT---YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIA 237 (901)
Q Consensus 164 SATl~~---~~f~~yf~~~~~i~i~gr~---~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (901)
|||-+. +.++.|+.++..+....+. +.++.++.... .+.
T Consensus 206 SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~--------s~n--------------------------- 250 (980)
T KOG4284|consen 206 SATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC--------SPN--------------------------- 250 (980)
T ss_pred eccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc--------CCc---------------------------
Confidence 999864 4788899888777766432 33444332210 000
Q ss_pred HHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCc
Q 046397 238 SAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTR 317 (901)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~ 317 (901)
..++ .+.+..+.+.++++.-+-...||||.....++.++..|...++.
T Consensus 251 nsve---------------------------emrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d----- 298 (980)
T KOG4284|consen 251 NSVE---------------------------EMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD----- 298 (980)
T ss_pred chHH---------------------------HHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC-----
Confidence 0011 11233345677777778889999999999999999999987654
Q ss_pred eEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHH
Q 046397 318 VLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQ 397 (901)
Q Consensus 318 ~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 397 (901)
+.++.|.|++.+|..+++..+.-..+|+|||+..++|||-|.|+.||+ .|++.+..+|. |
T Consensus 299 --~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD~p~d~eTY~----------H 358 (980)
T KOG4284|consen 299 --VTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------IDAPADEETYF----------H 358 (980)
T ss_pred --eEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cCCCcchHHHH----------H
Confidence 458899999999999999999999999999999999999999999999 88877766655 9
Q ss_pred HhhhcCCCC-CCceEEcCCcch
Q 046397 398 RRGRAGRVQ-PGECYRLYPRCV 418 (901)
Q Consensus 398 R~GRAGR~~-~G~c~~L~s~~~ 418 (901)
|+|||||.+ .|..+.++....
T Consensus 359 RIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 359 RIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred HhhhcccccccceeEEEeccch
Confidence 999999995 688888876543
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=9.3e-25 Score=250.36 Aligned_cols=301 Identities=20% Similarity=0.221 Sum_probs=201.4
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEE
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYK 92 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~ 92 (901)
-|.++++++.+++++++..|||.|||..+-++.+-. .| ..+|+.|--.|-....+.+. ..|..+.+-
T Consensus 21 gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G---~TLVVSPLiSLM~DQV~~l~-----~~Gi~A~~l 87 (590)
T COG0514 21 GQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EG---LTLVVSPLISLMKDQVDQLE-----AAGIRAAYL 87 (590)
T ss_pred CHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CC---CEEEECchHHHHHHHHHHHH-----HcCceeehh
Confidence 378999999999999999999999996655554321 12 45555699888766555551 222222111
Q ss_pred E----------ecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccC-cchhHHHH--HHHHHHhhCCCc
Q 046397 93 V----------RLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERG-MNEDFLLI--VLKDLLSRRPEL 158 (901)
Q Consensus 93 v----------r~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~-~~~d~ll~--~lk~ll~~~~~~ 158 (901)
- ..........+|+|.+|+.|..--..+. .-..+++++|||||.-+ +..||-.. .+..+....|++
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~ 167 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNP 167 (590)
T ss_pred hcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCC
Confidence 0 0011122357999999998764311111 24568899999999532 22344333 355667788899
Q ss_pred eEEEeccCCCHHHHH---hhhC-CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 159 RLVLMSATLDAELFS---SYFG-GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 159 kiIlmSATl~~~~f~---~yf~-~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
.++.+|||.+...-. +.++ +.+.+.+.++..|--.+.
T Consensus 168 p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~--------------------------------------- 208 (590)
T COG0514 168 PVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALK--------------------------------------- 208 (590)
T ss_pred CEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhh---------------------------------------
Confidence 999999999775333 2222 222222222211110000
Q ss_pred hhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC
Q 046397 235 QIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD 314 (901)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 314 (901)
+....+ ..+-+. .+.. ......++.||||.++..++.+++.|...+
T Consensus 209 -----v~~~~~-----------------------~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g---- 254 (590)
T COG0514 209 -----VVEKGE-----------------------PSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNG---- 254 (590)
T ss_pred -----hhhccc-----------------------HHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCC----
Confidence 000000 000000 0111 113456788999999999999999999874
Q ss_pred CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhc
Q 046397 315 PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVS 394 (901)
Q Consensus 315 ~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~ 394 (901)
+.+.++|++|+.++|..+.+.|.++..+|||||+...+|||.|||++||+ ||.|.++. +
T Consensus 255 ---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~lP~s~E----------s 313 (590)
T COG0514 255 ---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YDLPGSIE----------S 313 (590)
T ss_pred ---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ecCCCCHH----------H
Confidence 34679999999999999999999999999999999999999999999999 77776555 5
Q ss_pred HHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 395 AQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 395 ~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
|.|-.|||||. .|-.|+.||+..+..
T Consensus 314 YyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 314 YYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred HHHHHhhccCCCCcceEEEeeccccHH
Confidence 55999999999 689999999977653
No 72
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.92 E-value=4.4e-26 Score=239.50 Aligned_cols=312 Identities=21% Similarity=0.285 Sum_probs=206.5
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHH--------hhcCCCeeEEEEecchHHHHHHHHHHHHHHhC---
Q 046397 14 KNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEI--------TSVRGAVCSIICTQPRRISAMSVSERVASERG--- 82 (901)
Q Consensus 14 q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~--------~~~~~~~~~IlvtqPrr~la~qva~rva~e~~--- 82 (901)
|-+-++.+.++++.|-.+-||||||..+.+++.-.++ .++.|+.+.|+| |.|+||.|..+-+.+...
T Consensus 197 QvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiic--PSRELArQt~~iie~~~~~L~ 274 (610)
T KOG0341|consen 197 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIIC--PSRELARQTHDIIEQYVAALQ 274 (610)
T ss_pred eecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEc--CcHHHHHHHHHHHHHHHHHHH
Confidence 4445666778899999999999999666555443333 356788889999 999999999876654421
Q ss_pred C---cc---CcEe-eEEEecc-cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh
Q 046397 83 E---KL---GESV-GYKVRLE-GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS 153 (901)
Q Consensus 83 ~---~~---g~~v-Gy~vr~e-~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~ 153 (901)
+ +. +--+ |..++-. .......+|+|+|||.|.++|.... .|.-..++.+||++ |.++..|-- -++.+..
T Consensus 275 e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEd-dir~iF~ 352 (610)
T KOG0341|consen 275 EAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFED-DIRTIFS 352 (610)
T ss_pred hcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchh-hHHHHHH
Confidence 1 10 0000 2222111 1123568999999999999998765 78888999999999 434333221 2444444
Q ss_pred hCC-CceEEEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhh
Q 046397 154 RRP-ELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKR 232 (901)
Q Consensus 154 ~~~-~~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (901)
.++ ..+.+++|||++... + +|.... -..||.+..-. .|- ..-.
T Consensus 353 ~FK~QRQTLLFSATMP~KI-Q-~FAkSA------LVKPvtvNVGR-----AGA-----------------------Asld 396 (610)
T KOG0341|consen 353 FFKGQRQTLLFSATMPKKI-Q-NFAKSA------LVKPVTVNVGR-----AGA-----------------------ASLD 396 (610)
T ss_pred HHhhhhheeeeeccccHHH-H-HHHHhh------cccceEEeccc-----ccc-----------------------cchh
Confidence 333 457899999998652 1 221100 01122221100 000 0000
Q ss_pred hhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC
Q 046397 233 KSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL 312 (901)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~ 312 (901)
..+-...+.+. ..+..++..+ +....++|||+....++..++++|.-.+
T Consensus 397 ViQevEyVkqE---------------------------aKiVylLeCL--QKT~PpVLIFaEkK~DVD~IhEYLLlKG-- 445 (610)
T KOG0341|consen 397 VIQEVEYVKQE---------------------------AKIVYLLECL--QKTSPPVLIFAEKKADVDDIHEYLLLKG-- 445 (610)
T ss_pred HHHHHHHHHhh---------------------------hhhhhHHHHh--ccCCCceEEEeccccChHHHHHHHHHcc--
Confidence 00000111110 0112222222 3456799999999999999999997553
Q ss_pred CCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccH
Q 046397 313 GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIST 392 (901)
Q Consensus 313 ~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk 392 (901)
+....+||+-.+++|...++.|+.|+..|+|||++|..|+|+|++.+||| ||.+..+..
T Consensus 446 -----VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIEN-------- 504 (610)
T KOG0341|consen 446 -----VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIEN-------- 504 (610)
T ss_pred -----ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHH--------
Confidence 44678999999999999999999999999999999999999999999999 888877664
Q ss_pred hcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 393 VSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 393 a~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
|.||+||+||. ..|..-.++.+...
T Consensus 505 --YVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 505 --YVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred --HHHHhcccCCCCCcceeeeeecccch
Confidence 55999999999 56888887776543
No 73
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=4.6e-25 Score=248.18 Aligned_cols=363 Identities=20% Similarity=0.209 Sum_probs=246.8
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.++|...+..+.+++.|+|+|.|.+|||..+-..|...+-+ ..++++|.|-++|..|-++.+..|++ .+|-..
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMT 203 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK-DVGLMT 203 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc-ccceee
Confidence 678899999999999999999999999997776666655422 23899999999999999999999987 344444
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCc-----ccCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVH-----ERGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~H-----eR~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
| +-..++++..+|||+++|..+|-+.. -+..+..||+||+| |||+-.+--+. -..++.|.|++
T Consensus 204 G-----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETII------llP~~vr~VFL 272 (1041)
T KOG0948|consen 204 G-----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETII------LLPDNVRFVFL 272 (1041)
T ss_pred c-----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEE------eccccceEEEE
Confidence 3 22345778899999999999997765 68899999999999 67765542222 23467899999
Q ss_pred ccCC-CHHHHHhhhC-----CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhH
Q 046397 164 SATL-DAELFSSYFG-----GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIA 237 (901)
Q Consensus 164 SATl-~~~~f~~yf~-----~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (901)
|||+ |+..|++|.. .|.++..+.|.-|++.+..+- .| +.++.+-......+.+...
T Consensus 273 SATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~----gg--------------dGlylvVDek~~FrednF~ 334 (1041)
T KOG0948|consen 273 SATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPA----GG--------------DGLYLVVDEKGKFREDNFQ 334 (1041)
T ss_pred eccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecC----CC--------------CeeEEEEecccccchHHHH
Confidence 9998 7789999985 688888888888887653221 00 0000000001111111122
Q ss_pred HHHHHHHHhhcccccchhhhhhc-ccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCC---
Q 046397 238 SAVEDTLKAANFNEYSSQTRESL-SCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILG--- 313 (901)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~l-~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~--- 313 (901)
..+...........+.......- ...........-+..++..+..+ ...++|||.-++.+|+..+-.+....+..
T Consensus 335 ~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deE 413 (1041)
T KOG0948|consen 335 KAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEE 413 (1041)
T ss_pred HHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhH
Confidence 22221111111111111000000 00000011112344455555543 46799999999999999887776532211
Q ss_pred ----------------CC-------------CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEE
Q 046397 314 ----------------DP-------------TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVF 364 (901)
Q Consensus 314 ----------------~~-------------~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~ 364 (901)
.. .+-+|..+||||-+--...|.-.|.+|-+|+++||-+...|+|.|.-++
T Consensus 414 k~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 414 KELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred HHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 00 0234788999999988888888899999999999999999999998888
Q ss_pred EEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcch
Q 046397 365 VIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCV 418 (901)
Q Consensus 365 VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~ 418 (901)
|.- ..+.||... -.|||--+|+|+.|||||.+ .|.|+.+..+..
T Consensus 494 vFT----~~rKfDG~~------fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm 540 (1041)
T KOG0948|consen 494 VFT----AVRKFDGKK------FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKM 540 (1041)
T ss_pred EEe----eccccCCcc------eeeecccceEEecccccccCCCCCceEEEEecCcC
Confidence 763 222355543 46999999999999999985 799999987643
No 74
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=256.06 Aligned_cols=311 Identities=23% Similarity=0.319 Sum_probs=221.5
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHH-----hhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEI-----TSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~-----~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
+....|.+.+++|..+++||.+|.||||||..+.++++.+.. +.+.|+-+.|++ |+|++|.|+.+.+......
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~a--Ptrela~QI~r~~~kf~k~ 464 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILA--PTRELAMQIHREVRKFLKL 464 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEc--CCHHHHHHHHHHHHHHHhh
Confidence 445568889999999999999999999999999888876543 234455555555 9999999999888766543
Q ss_pred ccCcEee--EE---Eec-ccccCCCceEEEEcHHHHHHHHhcCC----CCCCceEEEEecCcccCcchhHHHHHHHHHHh
Q 046397 84 KLGESVG--YK---VRL-EGMKGRDTRLLFCTTGILLRRLLVDR----NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS 153 (901)
Q Consensus 84 ~~g~~vG--y~---vr~-e~~~~~~t~Ii~~T~g~Llr~L~~~~----~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~ 153 (901)
++..+- |+ +.. -....+.+.|+|||||..+..+..+. .+.+++++|+||++ |-.+.-|.....+.+-.
T Consensus 465 -l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~n 542 (997)
T KOG0334|consen 465 -LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQN 542 (997)
T ss_pred -cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhh
Confidence 433221 11 100 01112458999999999998876544 57777899999999 44455555555554444
Q ss_pred hCCCceEEEeccCCCHHH--HHhhhCCCcE-EeeCCccc---cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcc
Q 046397 154 RRPELRLVLMSATLDAEL--FSSYFGGATV-INIPGFTY---PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQ 227 (901)
Q Consensus 154 ~~~~~kiIlmSATl~~~~--f~~yf~~~~~-i~i~gr~~---pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (901)
.+|+.|.+++|||.+... ++.-.-..|+ +.+.|+.- .|+..+..
T Consensus 543 lrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V------------------------------ 592 (997)
T KOG0334|consen 543 LRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV------------------------------ 592 (997)
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE------------------------------
Confidence 688999999999987652 2211111221 11222110 00000000
Q ss_pred cchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHH
Q 046397 228 APRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQ 307 (901)
Q Consensus 228 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 307 (901)
-.+..+.+.+++..+......+++|||+...+.+..|.+.|.
T Consensus 593 --------------------------------------~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~ 634 (997)
T KOG0334|consen 593 --------------------------------------CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQ 634 (997)
T ss_pred --------------------------------------ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHH
Confidence 000011223334444444558999999999999999999999
Q ss_pred hCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccc
Q 046397 308 ANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLP 387 (901)
Q Consensus 308 ~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~ 387 (901)
+.++... .+||+.+..+|..+++.|++|..+++|||+++.+|+|+.++..||+ ||.++.+..|+
T Consensus 635 ~ag~~~~-------slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~edyv- 698 (997)
T KOG0334|consen 635 KAGYNCD-------SLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YDFPNHYEDYV- 698 (997)
T ss_pred hcCcchh-------hhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cccchhHHHHH-
Confidence 8766543 5999999999999999999999999999999999999999999999 99888777655
Q ss_pred ccccHhcHHHHhhhcCCC-CCCceEEcCCc
Q 046397 388 SWISTVSAQQRRGRAGRV-QPGECYRLYPR 416 (901)
Q Consensus 388 ~~iSka~~~QR~GRAGR~-~~G~c~~L~s~ 416 (901)
+|.||+||+ +.|.||.+.+.
T Consensus 699 ---------hR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 699 ---------HRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred ---------HHhcccccCCccceeEEEeCh
Confidence 999999999 56888888776
No 75
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=238.44 Aligned_cols=322 Identities=18% Similarity=0.228 Sum_probs=218.5
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC---CCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 4 FRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR---GAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 4 ~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~---~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
|....|+ |.+++..+.++.+++.|+|||||||+++..+++..+..... ....+.+|+.|+|+||.|++..+.+.
T Consensus 156 F~~Pt~i---q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 156 FDEPTPI---QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred CCCCCcc---cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 3444554 44789999999999999999999999999999988765431 23356777779999999999887554
Q ss_pred hCC--ccCcEee--EEEecc----cccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccCcchhHHHHHHH
Q 046397 81 RGE--KLGESVG--YKVRLE----GMKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERGMNEDFLLIVLK 149 (901)
Q Consensus 81 ~~~--~~g~~vG--y~vr~e----~~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~~~~d~ll~~lk 149 (901)
--. .-....+ |...-. -......+|++.||-.+...+...+ .+..+.++|+||++. -..-.++...+.
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~-lfe~~~f~~Qla 311 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL-LFEPEFFVEQLA 311 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh-hhChhhHHHHHH
Confidence 311 1111111 111000 0111347899999999999888776 789999999999994 122235555566
Q ss_pred HHHh--hCCCceEEEeccCCCHH--HHHhhhCC-CcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHh
Q 046397 150 DLLS--RRPELRLVLMSATLDAE--LFSSYFGG-ATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKM 224 (901)
Q Consensus 150 ~ll~--~~~~~kiIlmSATl~~~--~f~~yf~~-~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (901)
+++. ..|++++=++|||++.. .++.-... ...+.|.-+.
T Consensus 312 ~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~------------------------------------ 355 (593)
T KOG0344|consen 312 DIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN------------------------------------ 355 (593)
T ss_pred HHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecch------------------------------------
Confidence 6655 34788888999998543 33222111 1111111000
Q ss_pred hcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHH
Q 046397 225 SKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLND 304 (901)
Q Consensus 225 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~ 304 (901)
.....+++.+... ... .-....+..+....-..++|||+.+.+.+..|..
T Consensus 356 ----------sa~~~V~QelvF~------gse--------------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~ 405 (593)
T KOG0344|consen 356 ----------SANETVDQELVFC------GSE--------------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFE 405 (593)
T ss_pred ----------hHhhhhhhhheee------ecc--------------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHH
Confidence 0001111111000 000 0000112334444567899999999999999999
Q ss_pred HHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccc
Q 046397 305 KLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSC 384 (901)
Q Consensus 305 ~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~ 384 (901)
.|.. .....|...||..++.++.++++.|+.|++.|++||+++++|||+-+|+.||+ ||.+..
T Consensus 406 ~L~~------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~s--- 468 (593)
T KOG0344|consen 406 ELEI------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQS--- 468 (593)
T ss_pred Hhhh------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cCCCch---
Confidence 8852 12345778999999999999999999999999999999999999999999999 887764
Q ss_pred cccccccHhcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 385 LLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 385 l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
..+|.||+||+||. ++|+.|.+|+.++.
T Consensus 469 -------~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 469 -------DLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred -------hHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 44666999999999 57999999998544
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.3e-23 Score=246.16 Aligned_cols=325 Identities=17% Similarity=0.212 Sum_probs=195.2
Q ss_pred hcCCCcHHHHHHHHHHHHcC---CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 5 RRNLPAYKEKNRLLTAISQN---QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~---~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
|....++.||++.++.+..+ +..+|+.|||+|||.+....+.. . +..+.|+| |+..|+.|+.+.+.+..
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k~tLILv--ps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KKSCLVLC--TSAVSVEQWKQQFKMWS 322 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CCCEEEEe--CcHHHHHHHHHHHHHhc
Confidence 33456789999999998743 36799999999999887655432 1 23445555 99999999999998765
Q ss_pred CCccCcEee-EEEecccccCCCceEEEEcHHHHHHHHhcC-------CCC--CCceEEEEecCcccCcchhHHHHHHHHH
Q 046397 82 GEKLGESVG-YKVRLEGMKGRDTRLLFCTTGILLRRLLVD-------RNL--KGVTHVIVDEVHERGMNEDFLLIVLKDL 151 (901)
Q Consensus 82 ~~~~g~~vG-y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-------~~l--~~~~~IIIDE~HeR~~~~d~ll~~lk~l 151 (901)
..... .++ |.-...........|+|+|..++....... ..+ ..+++||+||||. +.... .+.+
T Consensus 323 ~l~~~-~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~--lpA~~----fr~i 395 (732)
T TIGR00603 323 TIDDS-QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV--VPAAM----FRRV 395 (732)
T ss_pred CCCCc-eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc--ccHHH----HHHH
Confidence 43322 222 211100111124689999999886422111 122 4688999999996 33332 3334
Q ss_pred HhhCCCceEEEeccCCCHH-----HHHhhhCCCcEEeeC-------CccccceEEeccchhhhcccccCCCCCCcchhhH
Q 046397 152 LSRRPELRLVLMSATLDAE-----LFSSYFGGATVINIP-------GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQE 219 (901)
Q Consensus 152 l~~~~~~kiIlmSATl~~~-----~f~~yf~~~~~i~i~-------gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 219 (901)
+...+....+++|||+..+ .+..+|| +.+...+ |..-|++.. +-.+. ..+ +
T Consensus 396 l~~l~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~--ev~v~-----------~t~---~ 458 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCA--EVWCP-----------MTP---E 458 (732)
T ss_pred HHhcCcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEE--EEEec-----------CCH---H
Confidence 4433445679999998321 2222333 3332221 221111110 00000 000 0
Q ss_pred HHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHH
Q 046397 220 KMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDI 299 (901)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i 299 (901)
.+ .+.+.... .....+...++ ..+..+..++.. ++ ..+.++|||+.....+
T Consensus 459 -~~------------------~~yl~~~~------~~k~~l~~~np--~K~~~~~~Li~~-he-~~g~kiLVF~~~~~~l 509 (732)
T TIGR00603 459 -FY------------------REYLRENS------RKRMLLYVMNP--NKFRACQFLIRF-HE-QRGDKIIVFSDNVFAL 509 (732)
T ss_pred -HH------------------HHHHHhcc------hhhhHHhhhCh--HHHHHHHHHHHH-Hh-hcCCeEEEEeCCHHHH
Confidence 00 00000000 00000000111 112222223322 11 3567999999999998
Q ss_pred HHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC-CeEEEEecchhhcccCCCCeEEEEeCCCcccccccc
Q 046397 300 NSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESG-VRKIVLATNIAETSITINDVVFVIDCGKAKETSYDA 378 (901)
Q Consensus 300 ~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g-~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~ 378 (901)
..+++.|.. ..+||+++..+|.++++.|+.| ..++||+|+++.+|||+|++++||. +++
T Consensus 510 ~~~a~~L~~------------~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~ 569 (732)
T TIGR00603 510 KEYAIKLGK------------PFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISS 569 (732)
T ss_pred HHHHHHcCC------------ceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCC
Confidence 888887731 2579999999999999999865 7899999999999999999999997 554
Q ss_pred CCCccccccccccHhcHHHHhhhcCCCCCC-ce-------EEcCCcchh
Q 046397 379 LNNTSCLLPSWISTVSAQQRRGRAGRVQPG-EC-------YRLYPRCVY 419 (901)
Q Consensus 379 ~~~~~~l~~~~iSka~~~QR~GRAGR~~~G-~c-------~~L~s~~~~ 419 (901)
+. -|+.++.||.||++|.++| .+ |.|.+++..
T Consensus 570 ~~---------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 570 HY---------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred CC---------CCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 32 2677889999999999754 33 788776544
No 77
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=7e-24 Score=244.13 Aligned_cols=367 Identities=19% Similarity=0.176 Sum_probs=236.5
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
-+..+|++.+.++..+..|+|+|+|.+|||..+-..|.-. .....+.++|.|-++|..|-.+.|.+.+|. +
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-----q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-v--- 367 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-----QKHMTRTIYTSPIKALSNQKFRDFKETFGD-V--- 367 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-----HhhccceEecchhhhhccchHHHHHHhccc-c---
Confidence 4678999999999999999999999999996665444321 112347899999999999999999777663 2
Q ss_pred eeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCc-----ccCcchhHHHHHHHHHHhhCCCceEEE
Q 046397 89 VGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVH-----ERGMNEDFLLIVLKDLLSRRPELRLVL 162 (901)
Q Consensus 89 vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~H-----eR~~~~d~ll~~lk~ll~~~~~~kiIl 162 (901)
| -+..+....+...+++||+++|..+|-+.. .++++..||+|||| |||+-.+-.++ ...+++++|+
T Consensus 368 -g-LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViI------MlP~HV~~Il 439 (1248)
T KOG0947|consen 368 -G-LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVII------MLPRHVNFIL 439 (1248)
T ss_pred -c-eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeee------eccccceEEE
Confidence 3 233455566889999999999999998766 67899999999999 67765553332 2356899999
Q ss_pred eccCC-CHHHHHhhhCCC-----cEEeeCCccccceEEeccc--hhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 163 MSATL-DAELFSSYFGGA-----TVINIPGFTYPVRTHFLED--ILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 163 mSATl-~~~~f~~yf~~~-----~~i~i~gr~~pV~~~~l~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
+|||+ |...|++|.|.. -++....|..|++.++.-+ .+... +. ....+.+-.+.......+
T Consensus 440 LSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kii----------dq-~g~fl~~~~~~a~~~~~~ 508 (1248)
T KOG0947|consen 440 LSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKII----------DQ-NGIFLLKGIKDAKDSLKK 508 (1248)
T ss_pred EeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhh----------cc-cchhhhhcchhhhhhhcc
Confidence 99998 778999999842 2444456667776654322 11000 00 000000000000000000
Q ss_pred hhHHHHHHHHHhhcccccchhh---------hhhcccCCCCCCch--hhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHH
Q 046397 235 QIASAVEDTLKAANFNEYSSQT---------RESLSCWNPDCIGF--NLIEYVLCYICEKERPGAVLVFMTGWDDINSLN 303 (901)
Q Consensus 235 ~~~~~i~~~l~~~~~~~~~~~~---------~~~l~~~~~~~i~~--~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~ 303 (901)
. ....... .......-..+. ......+ +...+. ..+.+++.++... .--+++||+=++..|++.+
T Consensus 509 ~-ak~~~~~-~~~~~~~rgs~~~ggk~~~~~g~~r~~~-~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a 584 (1248)
T KOG0947|consen 509 E-AKFVDVE-KSDARGGRGSQKRGGKTNYHNGGSRGSG-IGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYA 584 (1248)
T ss_pred c-ccccccc-cccccccccccccCCcCCCCCCCccccc-ccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHH
Confidence 0 0000000 000000000000 0000000 011111 2355566666543 4579999999999999999
Q ss_pred HHHHhCccCCC-------------------CC-------------ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecc
Q 046397 304 DKLQANRILGD-------------------PT-------------RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATN 351 (901)
Q Consensus 304 ~~L~~~~~~~~-------------------~~-------------~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTn 351 (901)
+.|....+..+ .. .-++..|||++-+--..-|...|..|-+||++||-
T Consensus 585 ~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATE 664 (1248)
T KOG0947|consen 585 DYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATE 664 (1248)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehh
Confidence 99976432111 01 12478899999999999999999999999999999
Q ss_pred hhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcc
Q 046397 352 IAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRC 417 (901)
Q Consensus 352 iaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~ 417 (901)
+.++|||.|.-++|+++ +.| +|-.... -+..-+|.|++|||||.+ .|..+.+....
T Consensus 665 TFAMGVNMPARtvVF~S-l~K---hDG~efR------~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 665 TFAMGVNMPARTVVFSS-LRK---HDGNEFR------ELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhhhhcCCCceeEEeee-hhh---ccCccee------ecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999999888873 333 3332211 245678999999999985 68777776543
No 78
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=3.1e-23 Score=243.94 Aligned_cols=422 Identities=18% Similarity=0.183 Sum_probs=261.1
Q ss_pred HHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC------CCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 12 KEKNRLLTAIS-QNQVVIISGETGCGKTTQVPQFILESEITSVR------GAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 12 ~~q~~il~~i~-~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~------~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
..|..+..+.. ...++++|||||+|||-.+.+-+++.+-...+ -...+|+++.|.+.|+..+...+++.+ ..
T Consensus 312 rIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl-a~ 390 (1674)
T KOG0951|consen 312 RIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL-AP 390 (1674)
T ss_pred HHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc-cc
Confidence 34555555554 45689999999999999998888887643222 124589999999999999988776654 24
Q ss_pred cCcEeeEEEeccc---ccCCCceEEEEcHHHHHHHHhcC---CCCCCceEEEEecCc----ccCcchhHHHHH-HHHHHh
Q 046397 85 LGESVGYKVRLEG---MKGRDTRLLFCTTGILLRRLLVD---RNLKGVTHVIVDEVH----ERGMNEDFLLIV-LKDLLS 153 (901)
Q Consensus 85 ~g~~vGy~vr~e~---~~~~~t~Ii~~T~g~Llr~L~~~---~~l~~~~~IIIDE~H----eR~~~~d~ll~~-lk~ll~ 153 (901)
+|..|+-..+-.. ..-..|.|++|||+-.--.-..+ ...+-++++||||+| .||.--+..... .++.-.
T Consensus 391 ~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses 470 (1674)
T KOG0951|consen 391 LGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSES 470 (1674)
T ss_pred cCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhh
Confidence 4555543322211 12357999999998542211221 245568999999998 355433322221 222222
Q ss_pred hCCCceEEEeccCC-CHHHHHhhhCCCc--EEe--eCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhccc
Q 046397 154 RRPELRLVLMSATL-DAELFSSYFGGAT--VIN--IPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA 228 (901)
Q Consensus 154 ~~~~~kiIlmSATl-~~~~f~~yf~~~~--~i~--i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (901)
.....+++++|||+ |-++.+.|++-.+ ++. -.-|.-|++..|+.- . ...
T Consensus 471 ~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi-------~-------------------ek~ 524 (1674)
T KOG0951|consen 471 TEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGI-------T-------------------EKK 524 (1674)
T ss_pred cccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEecc-------c-------------------cCC
Confidence 34578999999998 5667776665322 111 233445666655421 0 000
Q ss_pred chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHh
Q 046397 229 PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA 308 (901)
Q Consensus 229 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 308 (901)
+ ......+.++ ....+.+....+++|||+.++++..+.++.++.
T Consensus 525 ~----~~~~qamNe~--------------------------------~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd 568 (1674)
T KOG0951|consen 525 P----LKRFQAMNEA--------------------------------CYEKVLEHAGKNQVLVFVHSRKETAKTARAIRD 568 (1674)
T ss_pred c----hHHHHHHHHH--------------------------------HHHHHHHhCCCCcEEEEEEechHHHHHHHHHHH
Confidence 0 0001111111 223444556679999999999999998888873
Q ss_pred Ccc------------------------------CCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccC
Q 046397 309 NRI------------------------------LGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSIT 358 (901)
Q Consensus 309 ~~~------------------------------~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGId 358 (901)
... +.+...+++..+|+||+..+|..+.+.|..|.++|+++|-.+++|++
T Consensus 569 ~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvn 648 (1674)
T KOG0951|consen 569 KALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVN 648 (1674)
T ss_pred HHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcC
Confidence 110 11123467889999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCC-----CceEEcCCcchhh-hcccCCC--Ccc
Q 046397 359 INDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQP-----GECYRLYPRCVYD-AFAEYQL--PEI 430 (901)
Q Consensus 359 Ip~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~-----G~c~~L~s~~~~~-~l~~~~~--PEi 430 (901)
+|+-+++|- ....|||..+.-. .+|.-+..||.|||||.+. |+...=+++-.|. .+-..++ ++-
T Consensus 649 lpahtViik----gtqvy~pekg~w~----elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq 720 (1674)
T KOG0951|consen 649 LPAHTVIIK----GTQVYDPEKGRWT----ELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQ 720 (1674)
T ss_pred CCcceEEec----CccccCcccCccc----cCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHH
Confidence 999998884 3456999876543 3588899999999999953 3332223333332 2222222 222
Q ss_pred cccCccchhhhhhccCCCCH---HHHhh------hhcCCCh-----------------HHHHHHHHHHHHHcCCccCC--
Q 046397 431 LRTPLQSLCLQIKSLRLGTI---AGFLS------RALQSPE-----------------LLAVQNAIEYLKIIGALDHN-- 482 (901)
Q Consensus 431 ~r~~L~~~~L~~k~l~~~~~---~~fl~------~~l~pP~-----------------~~~v~~al~~L~~~gald~~-- 482 (901)
.-..|.+.+-.-+.+|+.++ .++|. +.+..|. .+-+..|...|.+.|.|--+
T Consensus 721 ~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~ 800 (1674)
T KOG0951|consen 721 FVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRK 800 (1674)
T ss_pred HHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccc
Confidence 21222221111223343322 22320 1111111 13567888899999988533
Q ss_pred ---CccchhhhhhhcCCCChHHHHH
Q 046397 483 ---EELTVLGQYLAMLPMEPKLGKM 504 (901)
Q Consensus 483 ---~~lT~lG~~la~lpl~p~~~k~ 504 (901)
-..|.+|+.-+.+.+.-.-...
T Consensus 801 s~~~~~telg~ias~yyi~~~s~~~ 825 (1674)
T KOG0951|consen 801 SGAIQATELGRIASSYYITHGSMAT 825 (1674)
T ss_pred cCcccchhhccccceeeeecchHHH
Confidence 3689999999999986655433
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.7e-23 Score=247.32 Aligned_cols=360 Identities=19% Similarity=0.249 Sum_probs=240.7
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
...+..+|++.+..|..+..|+|++|||||||...-.++...+ .++ . ++++|.|.++|..|.+..+..++|.- .
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al-~~~--q--rviYTsPIKALsNQKyrdl~~~fgdv-~ 190 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL-RDG--Q--RVIYTSPIKALSNQKYRDLLAKFGDV-A 190 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH-HcC--C--ceEeccchhhhhhhHHHHHHHHhhhh-h
Confidence 4567899999999999999999999999999966665555443 222 2 48899999999999999999998854 2
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcC-CCCCCceEEEEecCc-----ccCcchhHHHHHHHHHHhhCCCceE
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-RNLKGVTHVIVDEVH-----ERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-~~l~~~~~IIIDE~H-----eR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
..+|.-. .+-..++++.++++|+++|.+++..+ ..+.++.+||+||+| +||.-.+-.+ +....++++
T Consensus 191 ~~vGL~T-GDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I------i~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMT-GDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI------ILLPDHVRF 263 (1041)
T ss_pred hhcccee-cceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHH------HhcCCCCcE
Confidence 3334322 22334578899999999999999877 489999999999999 4554443222 223446899
Q ss_pred EEeccCC-CHHHHHhhhC-----CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhh
Q 046397 161 VLMSATL-DAELFSSYFG-----GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKS 234 (901)
Q Consensus 161 IlmSATl-~~~~f~~yf~-----~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (901)
|+||||+ |++.|+.|++ ++.++..+.|.-|.+.++.... .+ |. .++.. .. ....
T Consensus 264 v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~-~l--~~-----lvde~-~~-----------~~~~ 323 (1041)
T COG4581 264 VFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGK-GL--FD-----LVDEK-KK-----------FNAE 323 (1041)
T ss_pred EEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCC-ce--ee-----eeccc-cc-----------chhh
Confidence 9999999 8899999998 5778888889999888876541 00 00 00000 00 0000
Q ss_pred hhHHHHHHHHH-------hhcc---cccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHH
Q 046397 235 QIASAVEDTLK-------AANF---NEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLND 304 (901)
Q Consensus 235 ~~~~~i~~~l~-------~~~~---~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~ 304 (901)
.. ..+...+. ..+. ..+...+... ............++.++. ....-++++|+=++..|+..+.
T Consensus 324 ~~-~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~iv~~l~-~~~~lP~I~F~FSr~~Ce~~a~ 397 (1041)
T COG4581 324 NF-PSANRSLSCFSEKVRETDDGDVGRYARRTKAL----RGSAKGPAGRPEIVNKLD-KDNLLPAIVFSFSRRGCEEAAQ 397 (1041)
T ss_pred cc-hhhhhhhhccchhccccCcccccccccccccc----CCcccccccchHHHhhhh-hhcCCceEEEEEchhhHHHHHH
Confidence 00 00000000 0000 0000000000 001111111123333333 2346799999999999998887
Q ss_pred HHHhCcc--------------------CCCC-C-------------ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEec
Q 046397 305 KLQANRI--------------------LGDP-T-------------RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLAT 350 (901)
Q Consensus 305 ~L~~~~~--------------------~~~~-~-------------~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaT 350 (901)
.+..... +... . .-.+..||++|-+..+..+.+.|..|-+||++||
T Consensus 398 ~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaT 477 (1041)
T COG4581 398 ILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFAT 477 (1041)
T ss_pred HhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeeh
Confidence 7763211 0000 0 1135689999999999999999999999999999
Q ss_pred chhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCC
Q 046397 351 NIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYP 415 (901)
Q Consensus 351 niaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s 415 (901)
-+...|+|+|.-++|+ +++.| ||.. .-.|+|..+|.|+.|||||.+ .|..+...+
T Consensus 478 eT~s~GiNmPartvv~-~~l~K---~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 478 ETFAIGINMPARTVVF-TSLSK---FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred hhhhhhcCCcccceee-eeeEE---ecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999777666 56665 5532 235889999999999999995 688887744
No 80
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.2e-24 Score=224.92 Aligned_cols=316 Identities=20% Similarity=0.303 Sum_probs=213.6
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc-
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE- 87 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~- 87 (901)
|-.-+|.+| ..+-++.++++.+.+|+|||.++...++...- -..+.+.+++..|+|+||.|+.+.+ ...|...+.
T Consensus 49 PSaIQqraI-~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD--~~~ke~qalilaPtreLa~qi~~v~-~~lg~~~~~~ 124 (397)
T KOG0327|consen 49 PSAIQQRAI-LPCIKGHDVIAQAQSGTGKTAAFLISILQQID--MSVKETQALILAPTRELAQQIQKVV-RALGDHMDVS 124 (397)
T ss_pred chHHHhccc-cccccCCceeEeeeccccchhhhHHHHHhhcC--cchHHHHHHHhcchHHHHHHHHHHH-Hhhhccccee
Confidence 444444444 44557889999999999999888888887652 2334566777789999999998555 333332221
Q ss_pred ---EeeEEE---ecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397 88 ---SVGYKV---RLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 88 ---~vGy~v---r~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
.+|-.. ..........+|+++|||.++.++.... ....+...|+||++|+ +..+|.-.+....-...++.|+
T Consensus 125 v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-Ls~gfkdqI~~if~~lp~~vQv 203 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-LSRGFKDQIYDIFQELPSDVQV 203 (397)
T ss_pred eeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-hccchHHHHHHHHHHcCcchhh
Confidence 222111 1111223457999999999999987665 4567999999999984 3333333333333335568899
Q ss_pred EEeccCCCHHHH--HhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHH
Q 046397 161 VLMSATLDAELF--SSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIAS 238 (901)
Q Consensus 161 IlmSATl~~~~f--~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (901)
+++|||++.+.+ .+-|..-| +.+.--.+-+...+.+ +..
T Consensus 204 ~l~SAT~p~~vl~vt~~f~~~p----------v~i~vkk~~ltl~gik--------------------q~~--------- 244 (397)
T KOG0327|consen 204 VLLSATMPSDVLEVTKKFMREP----------VRILVKKDELTLEGIK--------------------QFY--------- 244 (397)
T ss_pred eeecccCcHHHHHHHHHhccCc----------eEEEecchhhhhhhee--------------------eee---------
Confidence 999999977643 33332222 2111100000000000 000
Q ss_pred HHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCce
Q 046397 239 AVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRV 318 (901)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 318 (901)
-....+-....++.++. .....+|||+++..+..+...|..++ +
T Consensus 245 ---------------------------i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~-------~ 288 (397)
T KOG0327|consen 245 ---------------------------INVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHG-------F 288 (397)
T ss_pred ---------------------------eeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCC-------c
Confidence 00000001123444554 45788999999999999999997664 3
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHH
Q 046397 319 LLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQR 398 (901)
Q Consensus 319 ~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 398 (901)
.+...|+.|...+|..+...|+.|..+|+|.|+.+++|+|+-++..||+ ||.|.+... |.+|
T Consensus 289 ~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------ydlP~~~~~----------yihR 350 (397)
T KOG0327|consen 289 TVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YDLPARKEN----------YIHR 350 (397)
T ss_pred eEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------eccccchhh----------hhhh
Confidence 4668999999999999999999999999999999999999999999999 888876654 4599
Q ss_pred hhhcCCC-CCCceEEcCCcchhhhc
Q 046397 399 RGRAGRV-QPGECYRLYPRCVYDAF 422 (901)
Q Consensus 399 ~GRAGR~-~~G~c~~L~s~~~~~~l 422 (901)
+||+||. ++|....+.+......+
T Consensus 351 ~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 351 IGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred cccccccCCCceeeeeehHhhHHHH
Confidence 9999999 68999999888665543
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.90 E-value=1.3e-22 Score=254.30 Aligned_cols=273 Identities=19% Similarity=0.189 Sum_probs=171.6
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
...+++|.+.++.+..++++++++|||||||+. .+++..... .++. +++++.|||+||.|+++++.... ...+.
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~--~~g~--~alIL~PTreLa~Qi~~~l~~l~-~~~~~ 152 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLA--KKGK--KSYIIFPTRLLVEQVVEKLEKFG-EKVGC 152 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHH--hcCC--eEEEEeccHHHHHHHHHHHHHHh-hhcCc
Confidence 357899999999999999999999999999964 333333221 2333 45555599999999999996553 33332
Q ss_pred EeeEEEecc------------cccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCccc---CcchhHHHH------
Q 046397 88 SVGYKVRLE------------GMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHER---GMNEDFLLI------ 146 (901)
Q Consensus 88 ~vGy~vr~e------------~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR---~~~~d~ll~------ 146 (901)
.+....... .......+|+|+||+.|.+.+. .-....+++|||||||.- +-+.|.++.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~ 231 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSE 231 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccchhhHHHhCCCCH
Confidence 221111111 0112458999999999998775 224456999999999942 111111111
Q ss_pred -HHHHHHhh-------------------------CCCceEEEeccCCCHHHH-HhhhCCCcEEeeCCccc---cceEEec
Q 046397 147 -VLKDLLSR-------------------------RPELRLVLMSATLDAELF-SSYFGGATVINIPGFTY---PVRTHFL 196 (901)
Q Consensus 147 -~lk~ll~~-------------------------~~~~kiIlmSATl~~~~f-~~yf~~~~~i~i~gr~~---pV~~~~l 196 (901)
.+..++.. ..+.+++++|||+++... ..+|...-.+.+..... .+...|.
T Consensus 232 ~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi 311 (1176)
T PRK09401 232 EDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYI 311 (1176)
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEE
Confidence 11111111 115689999999975422 12333221122221110 1111111
Q ss_pred cchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHH
Q 046397 197 EDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYV 276 (901)
Q Consensus 197 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~l 276 (901)
.. + +... .
T Consensus 312 ~~-------------------------------------------------------------------~----~k~~-~ 319 (1176)
T PRK09401 312 VD-------------------------------------------------------------------E----DSVE-K 319 (1176)
T ss_pred Ec-------------------------------------------------------------------c----cHHH-H
Confidence 00 0 0000 1
Q ss_pred HHHHHhhcCCCcEEEEcCCHHH---HHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEe----
Q 046397 277 LCYICEKERPGAVLVFMTGWDD---INSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLA---- 349 (901)
Q Consensus 277 l~~i~~~~~~g~iLVFl~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIva---- 349 (901)
+..+.... +..+||||++... ++.+++.|...++ .+..+||+| .+.++.|++|+.+||||
T Consensus 320 L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi-------~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~ 386 (1176)
T PRK09401 320 LVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGI-------NAELAISGF-----ERKFEKFEEGEVDVLVGVASY 386 (1176)
T ss_pred HHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCC-------cEEEEeCcH-----HHHHHHHHCCCCCEEEEecCC
Confidence 11222222 3579999998777 9999999998754 366899999 22359999999999999
Q ss_pred cchhhcccCCCC-eEEEEeCCCcc
Q 046397 350 TNIAETSITIND-VVFVIDCGKAK 372 (901)
Q Consensus 350 TniaetGIdIp~-V~~VId~G~~k 372 (901)
|+++++|||+|+ |+|||+.|.|+
T Consensus 387 tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 387 YGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCceeecCCCCcceeEEEEeCCCC
Confidence 699999999999 89999988887
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.89 E-value=5.6e-22 Score=239.06 Aligned_cols=358 Identities=18% Similarity=0.204 Sum_probs=203.4
Q ss_pred CCcHHHHHHHHHHHHc---CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 8 LPAYKEKNRLLTAISQ---NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 8 LPi~~~q~~il~~i~~---~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
..+...|.++++.+.+ ++++++.|+||||||..+...+.+.+ . .|. .++++.|+++|+.|+++++.+.++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l-~--~g~--~vLvLvPt~~L~~Q~~~~l~~~fg~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL-A--QGK--QALVLVPEIALTPQMLARFRARFGAP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH-H--cCC--eEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 3478899999999987 47899999999999988887766544 2 233 45555599999999999998877754
Q ss_pred cCcEeeEEE---ec---ccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHH----HHHHHHHHhh
Q 046397 85 LGESVGYKV---RL---EGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFL----LIVLKDLLSR 154 (901)
Q Consensus 85 ~g~~vGy~v---r~---e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~l----l~~lk~ll~~ 154 (901)
+....|... +. ........+|+++|++.+.. .+.++++|||||+|+-+...+-- ..-+......
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~ 291 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK 291 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh
Confidence 433322111 00 11123457999999987652 57889999999999654433210 0111122234
Q ss_pred CCCceEEEeccCCCHHHHHhhhC-CCcEEeeCCcc----ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 155 RPELRLVLMSATLDAELFSSYFG-GATVINIPGFT----YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 155 ~~~~kiIlmSATl~~~~f~~yf~-~~~~i~i~gr~----~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
..+.++|++|||++.+.+..... ....+.++.+. .| ....++ +-.. . .....
T Consensus 292 ~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id-~~~~------------------~---~~~~~ 348 (679)
T PRK05580 292 LENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIID-MREL------------------L---RGENG 348 (679)
T ss_pred ccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEe-chhh------------------h---hhccc
Confidence 56889999999998887765432 23344444432 22 111111 0000 0 00000
Q ss_pred hhhhhhhHHHHHHHHHhhccc-ccchhh---hhhc---ccCCCCCC--chhh-----HHHHHHHHHhhcCCC-------c
Q 046397 230 RKRKSQIASAVEDTLKAANFN-EYSSQT---RESL---SCWNPDCI--GFNL-----IEYVLCYICEKERPG-------A 288 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~-~~~~~~---~~~l---~~~~~~~i--~~~l-----i~~ll~~i~~~~~~g-------~ 288 (901)
......+...+++.++....- -+-... .... +.+...+. +..+ -..+.||.|.....- .
T Consensus 349 ~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 349 SFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCc
Confidence 000111222233333221000 000000 0000 00000110 0011 112334444332110 0
Q ss_pred EEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCC--HHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEE-
Q 046397 289 VLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMA--SSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFV- 365 (901)
Q Consensus 289 iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~--~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~V- 365 (901)
-..|.+....++++++.|.+.. ....|..+|+++. ..+++++++.|++|+..|||+|++++.|+|+|+|++|
T Consensus 429 ~~~l~~~g~G~e~~~e~l~~~f-----p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~ 503 (679)
T PRK05580 429 STDLVPVGPGTERLEEELAELF-----PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVG 503 (679)
T ss_pred CCeeEEeeccHHHHHHHHHHhC-----CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEE
Confidence 0123333445667777776641 1234778999986 4578899999999999999999999999999999988
Q ss_pred -EeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEE
Q 046397 366 -IDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYR 412 (901)
Q Consensus 366 -Id~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~ 412 (901)
+| .|...+.+.|...--.-+.+.|++|||||. .+|.|+.
T Consensus 504 il~--------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 504 VLD--------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred EEc--------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 45 344434333322212234677999999996 6788874
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=8.6e-22 Score=239.13 Aligned_cols=324 Identities=22% Similarity=0.232 Sum_probs=182.4
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh----C-C
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER----G-E 83 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~----~-~ 83 (901)
..+++|..+.+...+...+||.+|||+|||.++..++.. +...+ ....|++..||++.+.++++|+.+.. + .
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQG--LADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 357788877655456788999999999999888766553 33322 23367777799999999999997532 2 1
Q ss_pred ccCcEeeEEE---eccc--------------------------ccCCCceEEEEcHHHHHHHHhcCC--CCCC----ceE
Q 046397 84 KLGESVGYKV---RLEG--------------------------MKGRDTRLLFCTTGILLRRLLVDR--NLKG----VTH 128 (901)
Q Consensus 84 ~~g~~vGy~v---r~e~--------------------------~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~----~~~ 128 (901)
.+.-..|... .+.. +..--..|+|||...++......+ .+.. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 1111112110 0000 000126899999988775544332 2222 258
Q ss_pred EEEecCcccCcchhHH-HHHHHHHHhhCCCceEEEeccCCCHHHHHhhh---CCCcEEeeCCccccceEEeccchhhhcc
Q 046397 129 VIVDEVHERGMNEDFL-LIVLKDLLSRRPELRLVLMSATLDAELFSSYF---GGATVINIPGFTYPVRTHFLEDILDMTG 204 (901)
Q Consensus 129 IIIDE~HeR~~~~d~l-l~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf---~~~~~i~i~gr~~pV~~~~l~d~~~~~~ 204 (901)
|||||||--+..+.-+ ..+++.+ . ....++|+||||++...-.++. ++...+ .....||.-...-.. ....
T Consensus 443 vIiDEVHAyD~ym~~lL~~~L~~l-~-~~g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~YPlvt~~~~~--~~~~ 517 (878)
T PRK09694 443 LIVDEVHAYDAYMYGLLEAVLKAQ-A-QAGGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSAYPLITWRGVN--GAQR 517 (878)
T ss_pred EEEechhhCCHHHHHHHHHHHHHH-H-hcCCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccccccccccccc--ccee
Confidence 9999999754433322 2233322 2 2356799999999875433332 222111 111123321110000 0000
Q ss_pred cccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCC-CC-CCchhhHHHHHHHHHh
Q 046397 205 YRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWN-PD-CIGFNLIEYVLCYICE 282 (901)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~-~i~~~li~~ll~~i~~ 282 (901)
+..... ....+.... . .+.... .. ..+..++..++..+
T Consensus 518 ~~~~~~--------------~~~~~~~~~-------------v-----------~v~~~~~~~~~~~~~~l~~i~~~~-- 557 (878)
T PRK09694 518 FDLSAH--------------PEQLPARFT-------------I-----------QLEPICLADMLPDLTLLQRMIAAA-- 557 (878)
T ss_pred eecccc--------------ccccCcceE-------------E-----------EEEeeccccccCHHHHHHHHHHHH--
Confidence 000000 000000000 0 000000 00 00011222222211
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHH----hhcCCC-CCCC---eEEEEecchhh
Q 046397 283 KERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQR----LIFDEP-ESGV---RKIVLATNIAE 354 (901)
Q Consensus 283 ~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~----~i~~~f-~~g~---~kIIvaTniae 354 (901)
..++++|||+|+++.++.+++.|.+... ....+..+||.++..+|. ++++.| ++|+ .+|||||+++|
T Consensus 558 -~~g~~vLVf~NTV~~Aq~ly~~L~~~~~----~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 558 -NAGAQVCLICNLVDDAQKLYQRLKELNN----TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred -hcCCEEEEEECCHHHHHHHHHHHHhhCC----CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 3467899999999999999999986421 134578999999999984 566677 5565 47999999999
Q ss_pred cccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC
Q 046397 355 TSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ 406 (901)
Q Consensus 355 tGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~ 406 (901)
+|+|| +++++|. .. ....++.||+||+||.+
T Consensus 633 ~GLDI-d~DvlIt--------dl------------aPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 633 QSLDL-DFDWLIT--------QL------------CPVDLLFQRLGRLHRHH 663 (878)
T ss_pred heeec-CCCeEEE--------CC------------CCHHHHHHHHhccCCCC
Confidence 99999 5787774 11 12346779999999984
No 84
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=4.9e-21 Score=220.50 Aligned_cols=324 Identities=18% Similarity=0.158 Sum_probs=194.6
Q ss_pred CCCcHHHHHHHHHHHHc----CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 7 NLPAYKEKNRLLTAISQ----NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~----~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
......||++.++++.+ ++..+|+.|||+|||..+...+.+. ... ++|+.||++|+.|.++++....+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~--~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRS--TLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCC--EEEEECcHHHHHHHHHHHHHhcC
Confidence 45588999999999998 8999999999999997776665542 122 44445999999999988877766
Q ss_pred Cc--cCcEeeEEEecccccCCC-ceEEEEcHHHHHHH-HhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCc
Q 046397 83 EK--LGESVGYKVRLEGMKGRD-TRLLFCTTGILLRR-LLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPEL 158 (901)
Q Consensus 83 ~~--~g~~vGy~vr~e~~~~~~-t~Ii~~T~g~Llr~-L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ 158 (901)
.. .|..-|-.. ... ..|+|+|.+.+.+. .........+++||+||||+. ..+....++. .....
T Consensus 106 ~~~~~g~~~~~~~------~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~--~a~~~~~~~~----~~~~~ 173 (442)
T COG1061 106 LNDEIGIYGGGEK------ELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHL--PAPSYRRILE----LLSAA 173 (442)
T ss_pred CccccceecCcee------ccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccC--CcHHHHHHHH----hhhcc
Confidence 53 222211111 111 47999999999986 233334447999999999984 3433333333 33344
Q ss_pred e-EEEeccCCCHH---HHHhhhC--CCcEEeeC-------CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhh
Q 046397 159 R-LVLMSATLDAE---LFSSYFG--GATVINIP-------GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMS 225 (901)
Q Consensus 159 k-iIlmSATl~~~---~f~~yf~--~~~~i~i~-------gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (901)
. +++||||+... ....+|. +..+..++ |..-|.......+.. ............
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~-------------t~~~~~~~~~~~ 240 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTL-------------TEDEEREYAKES 240 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEecc-------------chHHHHHhhhhh
Confidence 4 99999997322 2222222 22222222 222222222211100 000000000000
Q ss_pred cccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHH
Q 046397 226 KQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDK 305 (901)
Q Consensus 226 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 305 (901)
...................... .......+..+-.++.......+++||+....++..++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~ 302 (442)
T COG1061 241 ARFRELLRARGTLRAENEARRI------------------AIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKL 302 (442)
T ss_pred hhhhhhhhhhhhhhHHHHHHHH------------------hhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHH
Confidence 0000000000000000000000 0000011122222222222467999999999999999999
Q ss_pred HHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccc
Q 046397 306 LQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCL 385 (901)
Q Consensus 306 L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l 385 (901)
+...+. +..+.+..+..||..+++.|+.|..++|+++.++.+|+|+|++.++|-..-
T Consensus 303 ~~~~~~--------~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~--------------- 359 (442)
T COG1061 303 FLAPGI--------VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP--------------- 359 (442)
T ss_pred hcCCCc--------eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC---------------
Confidence 976533 447889999999999999999999999999999999999999999995221
Q ss_pred ccccccHhcHHHHhhhcCCCCC
Q 046397 386 LPSWISTVSAQQRRGRAGRVQP 407 (901)
Q Consensus 386 ~~~~iSka~~~QR~GRAGR~~~ 407 (901)
.-|+..+.||.||.-|..+
T Consensus 360 ---t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 360 ---TGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred ---CCcHHHHHHHhhhhccCCC
Confidence 1267788899999999643
No 85
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=3.1e-21 Score=228.08 Aligned_cols=349 Identities=20% Similarity=0.208 Sum_probs=204.4
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 4 FRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 4 ~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
.++.|-++.++.+++..+.-++..|+.++||+|||+++..+++..++. +. .++|+.|++.||.+.++.+.... .
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~~l~-~ 136 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMGPVY-E 136 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHHHHH-h
Confidence 356677788888899988877778999999999999998887765543 22 25555599999999998775443 2
Q ss_pred ccCcEeeEEEec------c---cccCCCceEEEEcHHHH-HHHHhc-------CCCCCCceEEEEecCccc------C--
Q 046397 84 KLGESVGYKVRL------E---GMKGRDTRLLFCTTGIL-LRRLLV-------DRNLKGVTHVIVDEVHER------G-- 138 (901)
Q Consensus 84 ~~g~~vGy~vr~------e---~~~~~~t~Ii~~T~g~L-lr~L~~-------~~~l~~~~~IIIDE~HeR------~-- 138 (901)
.+|-.||..+.. . ......++|+|+||+.| ...|.. ...+.++.++||||||.- +
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 345555543321 1 11123689999999998 343321 124788999999999941 0
Q ss_pred -------cchhHHHHHHHHHHhhC-C--------CceEEEeccCCCHHHHHhh---------------------------
Q 046397 139 -------MNEDFLLIVLKDLLSRR-P--------ELRLVLMSATLDAELFSSY--------------------------- 175 (901)
Q Consensus 139 -------~~~d~ll~~lk~ll~~~-~--------~~kiIlmSATl~~~~f~~y--------------------------- 175 (901)
..++ +......+.+.. + .-|-|.++-.- .+...++
T Consensus 217 iisg~~~~~~~-~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G-~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 217 VISGAPRVQSN-LYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKG-IEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred eeeCCCccchH-HHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhH-HHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 1122 222222232221 1 12333333220 0011111
Q ss_pred hC-C-------CcEEee--------CCcccc--------------ce------------EEe--ccchhhhcccccCCCC
Q 046397 176 FG-G-------ATVINI--------PGFTYP--------------VR------------THF--LEDILDMTGYRLTPYN 211 (901)
Q Consensus 176 f~-~-------~~~i~i--------~gr~~p--------------V~------------~~~--l~d~~~~~~~~~~~~~ 211 (901)
|. + ..++-| +|+.|+ ++ .+| .+.+..++|-..+.
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~-- 372 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA-- 372 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH--
Confidence 11 1 112222 122110 00 011 25566666632110
Q ss_pred CCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCC---chhhHHHHHHHHHhh-cCCC
Q 046397 212 QIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCI---GFNLIEYVLCYICEK-ERPG 287 (901)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i---~~~li~~ll~~i~~~-~~~g 287 (901)
..++++...-. ........+..+. -.++.+ ..+....++..+... ....
T Consensus 373 ------~~Ef~~iY~l~-----------------v~~IPt~kp~~r~----d~~d~i~~~~~~K~~ai~~~i~~~~~~~~ 425 (762)
T TIGR03714 373 ------EKEFIETYSLS-----------------VVKIPTNKPIIRI----DYPDKIYATLPEKLMATLEDVKEYHETGQ 425 (762)
T ss_pred ------HHHHHHHhCCC-----------------EEEcCCCCCeeee----eCCCeEEECHHHHHHHHHHHHHHHhhCCC
Confidence 11111110000 0000000000000 000000 011222333333221 4567
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC-------
Q 046397 288 AVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN------- 360 (901)
Q Consensus 288 ~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp------- 360 (901)
++||||++.+.++.+.+.|...++. ...+||.+...++..+.+.+.+| .|+||||+|++|+|||
T Consensus 426 pvLIft~s~~~se~ls~~L~~~gi~-------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~ 496 (762)
T TIGR03714 426 PVLLITGSVEMSEIYSELLLREGIP-------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAE 496 (762)
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCC-------EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccc
Confidence 9999999999999999999987543 44789999999998998888777 7999999999999999
Q ss_pred --CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 361 --DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 361 --~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
++.+||. |+++..- ...||+||+||. .||.++.+++.+
T Consensus 497 ~GGL~vIit--------~~~ps~r-----------id~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 497 LGGLAVIGT--------ERMENSR-----------VDLQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred cCCeEEEEe--------cCCCCcH-----------HHHHhhhcccCCCCceeEEEEEccc
Confidence 9999998 7766532 226999999999 589999888753
No 86
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.88 E-value=8.6e-21 Score=236.74 Aligned_cols=358 Identities=16% Similarity=0.237 Sum_probs=198.3
Q ss_pred CCcHHHHHHHHHHHH-----cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 8 LPAYKEKNRLLTAIS-----QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 8 LPi~~~q~~il~~i~-----~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
.....||.+.++++. .++..+|+++||||||..+...+. .++.... ..+|++++||++|+.|..+.+.....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~~~~--~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLKAKR--FRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHhcCc--cCeEEEEecHHHHHHHHHHHHHhccc
Confidence 345779999887764 246789999999999966554443 3433322 34788888999999999988855321
Q ss_pred CccCcEe-e-EEEe-c-ccccCCCceEEEEcHHHHHHHHhcC------CCCCCceEEEEecCcccCcchh----------
Q 046397 83 EKLGESV-G-YKVR-L-EGMKGRDTRLLFCTTGILLRRLLVD------RNLKGVTHVIVDEVHERGMNED---------- 142 (901)
Q Consensus 83 ~~~g~~v-G-y~vr-~-e~~~~~~t~Ii~~T~g~Llr~L~~~------~~l~~~~~IIIDE~HeR~~~~d---------- 142 (901)
..+..+ + |.+. + +.......+|+|+|.+.+.+.+... +.+..+++||||||| |+...|
T Consensus 489 -~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 -EGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQF 566 (1123)
T ss_pred -ccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhcc
Confidence 111010 0 1111 1 1112345799999999998775421 356789999999999 554211
Q ss_pred ----HHHHHHHHHHhhCCCceEEEeccCCCHHHHHhhhCCCcEEeeCCccccceEEecc---------chhhhcccccCC
Q 046397 143 ----FLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLE---------DILDMTGYRLTP 209 (901)
Q Consensus 143 ----~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~---------d~~~~~~~~~~~ 209 (901)
-.....+.++.. .+..+|+||||+... ..++|+. |+....- .--|...|+- ..+...|.....
T Consensus 567 ~~~~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~-pv~~Ysl-~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGE-PVYTYSY-REAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred chhhhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCC-eeEEeeH-HHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 012345666664 356789999999643 3567763 3322110 0001111110 000001111100
Q ss_pred CCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcE
Q 046397 210 YNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAV 289 (901)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~i 289 (901)
.+....+.... ........ ...+.....+ +.... ..++. .-..+..++.++ ....++++
T Consensus 643 ~e~~~~~~~~~-~~i~~~~l---~d~~~~~~~~-~~~~v--------------i~~~~-~~~i~~~l~~~l-~~~~~~Kt 701 (1123)
T PRK11448 643 GEEVEVINTQT-GEIDLATL---EDEVDFEVED-FNRRV--------------ITESF-NRVVCEELAKYL-DPTGEGKT 701 (1123)
T ss_pred cchhhhcchhh-hhhhhccC---cHHHhhhHHH-HHHHH--------------hhHHH-HHHHHHHHHHHH-hccCCCcE
Confidence 00000000000 00000000 0000000000 00000 00000 001122333343 23345899
Q ss_pred EEEcCCHHHHHHHHHHHHhCcc--CCCCCceEEEEecCCCCHHHHHhhcCCCCCCCe-EEEEecchhhcccCCCCeEEEE
Q 046397 290 LVFMTGWDDINSLNDKLQANRI--LGDPTRVLLLTCHGSMASSEQRLIFDEPESGVR-KIVLATNIAETSITINDVVFVI 366 (901)
Q Consensus 290 LVFl~~~~~i~~l~~~L~~~~~--~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~-kIIvaTniaetGIdIp~V~~VI 366 (901)
||||.+.++++.+.+.|.+... .+......+..+||+.+ ++..+++.|+++.. +|+|+++++.||+|+|.|..||
T Consensus 702 iIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vV 779 (1123)
T PRK11448 702 LIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLV 779 (1123)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEE
Confidence 9999999999999998876311 01111223456788875 45678899988876 7999999999999999999999
Q ss_pred eCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCC--Cc-eEEcCC
Q 046397 367 DCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQP--GE-CYRLYP 415 (901)
Q Consensus 367 d~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~--G~-c~~L~s 415 (901)
- +++.. |+..|.||+||+.|..+ |+ ++.+|.
T Consensus 780 f--------~rpvk----------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 780 F--------LRRVR----------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred E--------ecCCC----------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 6 44432 66778899999999977 43 444544
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.4e-21 Score=200.43 Aligned_cols=287 Identities=19% Similarity=0.267 Sum_probs=192.7
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC-CccCcEeeEEE
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG-EKLGESVGYKV 93 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~-~~~g~~vGy~v 93 (901)
+++++.+.+.+..+|.|-||+|||..+.+.|-..+ +. ..+|.+..||...+.+++.|+.+.+. +.+...-|
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-~~----G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg--- 178 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-NQ----GGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG--- 178 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-hc----CCeEEEecCcccchHHHHHHHHHhhccCCeeeEec---
Confidence 45777888999999999999999988777765433 22 23677788999999999999988875 33222211
Q ss_pred ecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHH-HHHHHhhCCCceEEEeccCCCHHHH
Q 046397 94 RLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIV-LKDLLSRRPELRLVLMSATLDAELF 172 (901)
Q Consensus 94 r~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~-lk~ll~~~~~~kiIlmSATl~~~~f 172 (901)
++..--.+.+++||+..|+|. -..++++|||||+--....|-.+.. ++.. +.+.--.|.||||...+.-
T Consensus 179 --~S~~~fr~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~ 248 (441)
T COG4098 179 --DSDSYFRAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLE 248 (441)
T ss_pred --CCchhccccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHH
Confidence 222223488999999999984 3568999999999766666654443 2222 2334568999999877655
Q ss_pred HhhhC-CCcEEeeCCccc----cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhh
Q 046397 173 SSYFG-GATVINIPGFTY----PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAA 247 (901)
Q Consensus 173 ~~yf~-~~~~i~i~gr~~----pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 247 (901)
.+... +-..+.+|-|-+ ||..+.-- .+ | ...+..
T Consensus 249 r~~~~g~~~~~klp~RfH~~pLpvPkf~w~----------------~~------~------------------~k~l~r- 287 (441)
T COG4098 249 RKILKGNLRILKLPARFHGKPLPVPKFVWI----------------GN------W------------------NKKLQR- 287 (441)
T ss_pred HHhhhCCeeEeecchhhcCCCCCCCceEEe----------------cc------H------------------HHHhhh-
Confidence 55443 233455664432 33222100 00 0 000000
Q ss_pred cccccchhhhhhcccCCCCCCchhhHHHHHHHHHhh-cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCC
Q 046397 248 NFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEK-ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGS 326 (901)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~ 326 (901)
..+.. .++.++-+. ..+.++|||+|+.+..+.++..|+..- ....+...||.
T Consensus 288 ------------------~kl~~----kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-----~~~~i~~Vhs~ 340 (441)
T COG4098 288 ------------------NKLPL----KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-----PKETIASVHSE 340 (441)
T ss_pred ------------------ccCCH----HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-----Cccceeeeecc
Confidence 00111 122222222 245799999999999999999996542 12346678887
Q ss_pred CCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC
Q 046397 327 MASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV 405 (901)
Q Consensus 327 l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~ 405 (901)
...|.+..+.|++|+.+++++|.|+|+|+|+|+|+++| .++.... -|+++..|.+||+||.
T Consensus 341 --d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V---------lgaeh~v-------fTesaLVQIaGRvGRs 401 (441)
T COG4098 341 --DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV---------LGAEHRV-------FTESALVQIAGRVGRS 401 (441)
T ss_pred --CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE---------ecCCccc-------ccHHHHHHHhhhccCC
Confidence 45678888999999999999999999999999999877 3333222 2778889999999998
No 88
>PRK14701 reverse gyrase; Provisional
Probab=99.88 E-value=1.5e-21 Score=249.46 Aligned_cols=312 Identities=15% Similarity=0.091 Sum_probs=190.8
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC--
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG-- 86 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g-- 86 (901)
..+..|.++++.+.+++++++.||||||||+.+..+.+.. ..++. .++++.|+|+|+.|+++++.... ...+
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~---~~~g~--~aLVl~PTreLa~Qi~~~l~~l~-~~~~~~ 152 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL---ALKGK--KCYIILPTTLLVKQTVEKIESFC-EKANLD 152 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH---HhcCC--eEEEEECHHHHHHHHHHHHHHHH-hhcCCc
Confidence 4678999999999999999999999999998333222222 12333 45555599999999999986543 2222
Q ss_pred cEeeEEEec----------ccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccC---cc-------hhHHHH
Q 046397 87 ESVGYKVRL----------EGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERG---MN-------EDFLLI 146 (901)
Q Consensus 87 ~~vGy~vr~----------e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~---~~-------~d~ll~ 146 (901)
..+.+-... +.......+|+|+||+.|.+.+..-.. .++++|||||||... -+ .+|...
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e 231 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEE 231 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-CCCCEEEEECceeccccccccchhhhcCCChHH
Confidence 222221111 111223579999999988876543222 679999999999531 11 122222
Q ss_pred HHH-------------------------HHHhhCC-Cce-EEEeccCCCH-HHHHhhhCCCcEEeeCCccc---cceEEe
Q 046397 147 VLK-------------------------DLLSRRP-ELR-LVLMSATLDA-ELFSSYFGGATVINIPGFTY---PVRTHF 195 (901)
Q Consensus 147 ~lk-------------------------~ll~~~~-~~k-iIlmSATl~~-~~f~~yf~~~~~i~i~gr~~---pV~~~~ 195 (901)
+.. ..+...| ..+ ++++|||++. .....+|...-.+.+..... -+...|
T Consensus 232 ~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~y 311 (1638)
T PRK14701 232 IIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVY 311 (1638)
T ss_pred HHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEE
Confidence 211 1111222 233 5779999975 34445565443333332211 111111
Q ss_pred ccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHH
Q 046397 196 LEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEY 275 (901)
Q Consensus 196 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ 275 (901)
... +.+....
T Consensus 312 i~~----------------------------------------------------------------------~~~~k~~ 321 (1638)
T PRK14701 312 LNP----------------------------------------------------------------------EKIIKEH 321 (1638)
T ss_pred EEC----------------------------------------------------------------------CHHHHHH
Confidence 100 0000001
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHH---HHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEec--
Q 046397 276 VLCYICEKERPGAVLVFMTGWDD---INSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLAT-- 350 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaT-- 350 (901)
+..+.... +...||||++.+. ++.+++.|...+ +.+..+||+ |..+++.|++|+.+|||||
T Consensus 322 -L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~G-------i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s 387 (1638)
T PRK14701 322 -VRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDG-------FKIELVSAK-----NKKGFDLFEEGEIDYLIGVAT 387 (1638)
T ss_pred -HHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCC-------CeEEEecch-----HHHHHHHHHcCCCCEEEEecC
Confidence 11222222 3578999999875 488999998764 346789985 7889999999999999999
Q ss_pred --chhhcccCCCC-eEEEEeCCCccccc----cccCCCccccccccccHhcHHHHhhhcCCCC-CCceEEcCCcc
Q 046397 351 --NIAETSITIND-VVFVIDCGKAKETS----YDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-PGECYRLYPRC 417 (901)
Q Consensus 351 --niaetGIdIp~-V~~VId~G~~k~~~----yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L~s~~ 417 (901)
+++.+|||+|+ |+|||+.|.||.+. |..... . .|. .....++.|||||.+ |+.|+..+...
T Consensus 388 ~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~--~---~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 388 YYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIY--R---ILG-LLSEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred CCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchh--h---hhc-chHHHHHhhhhcccCCcchhHHHhHHH
Confidence 59999999999 99999988888321 111110 0 011 234568889999994 77776554433
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=1.2e-21 Score=223.85 Aligned_cols=305 Identities=21% Similarity=0.307 Sum_probs=209.7
Q ss_pred hcCCC--cHHHHHHHHHHHHcCC------eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHH
Q 046397 5 RRNLP--AYKEKNRLLTAISQNQ------VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSER 76 (901)
Q Consensus 5 r~~LP--i~~~q~~il~~i~~~~------~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~r 76 (901)
.+.|| +...|+.++..|...- +=++.|.-|||||..+...++... + .|..+..+. ||-+||.|-++.
T Consensus 256 ~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai-~--~G~Q~ALMA--PTEILA~QH~~~ 330 (677)
T COG1200 256 LAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI-E--AGYQAALMA--PTEILAEQHYES 330 (677)
T ss_pred HHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH-H--cCCeeEEec--cHHHHHHHHHHH
Confidence 34555 5677887777775431 348999999999988888877654 2 344454444 999999999999
Q ss_pred HHHHhCCccCcEeeEEEe----------cccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHH
Q 046397 77 VASERGEKLGESVGYKVR----------LEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLI 146 (901)
Q Consensus 77 va~e~~~~~g~~vGy~vr----------~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~ 146 (901)
+++.+. ++|-.|++-+. .+...+...+|+|+|...+ +.+-.+.++.+|||||=|..|+..-
T Consensus 331 ~~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~QR---- 401 (677)
T COG1200 331 LRKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVHQR---- 401 (677)
T ss_pred HHHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hcceeecceeEEEEeccccccHHHH----
Confidence 987764 44444554332 1333456789999999643 3333789999999999997665543
Q ss_pred HHHHHHhhCC-CceEEEeccCC-CHHHHHhhhCCCcEEee---CCccccceEEeccchhhhcccccCCCCCCcchhhHHH
Q 046397 147 VLKDLLSRRP-ELRLVLMSATL-DAELFSSYFGGATVINI---PGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKM 221 (901)
Q Consensus 147 ~lk~ll~~~~-~~kiIlmSATl-~~~~f~~yf~~~~~i~i---~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 221 (901)
..+..+.. .+.++.||||+ +...--..|++-.+-.| |.-.-||..+.+.+-
T Consensus 402 --~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~---------------------- 457 (677)
T COG1200 402 --LALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHE---------------------- 457 (677)
T ss_pred --HHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccc----------------------
Confidence 12233445 57899999998 55555577776554443 333347777655320
Q ss_pred hHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHH-
Q 046397 222 WKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDIN- 300 (901)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~- 300 (901)
+..++...+...+ ..+.++.|.||-.++-+
T Consensus 458 ----------~~~~v~e~i~~ei---------------------------------------~~GrQaY~VcPLIeESE~ 488 (677)
T COG1200 458 ----------RRPEVYERIREEI---------------------------------------AKGRQAYVVCPLIEESEK 488 (677)
T ss_pred ----------cHHHHHHHHHHHH---------------------------------------HcCCEEEEEecccccccc
Confidence 0011111111111 24567888888765544
Q ss_pred -------HHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccc
Q 046397 301 -------SLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKE 373 (901)
Q Consensus 301 -------~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~ 373 (901)
.+++.|... + .++.|..+||.|+++|+++|++.|++|+.+|+|||.+.|-|||+|+.++.|-
T Consensus 489 l~l~~a~~~~~~L~~~--~---~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI------ 557 (677)
T COG1200 489 LELQAAEELYEELKSF--L---PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI------ 557 (677)
T ss_pred chhhhHHHHHHHHHHH--c---ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE------
Confidence 455555522 2 3466889999999999999999999999999999999999999999998775
Q ss_pred cccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcch
Q 046397 374 TSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 374 ~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
+|+.+ .--|+..|-+||+||. .+..|+.+|....
T Consensus 558 --e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 558 --ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred --echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 66554 1234666999999999 6899999997543
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=7.7e-22 Score=229.87 Aligned_cols=332 Identities=18% Similarity=0.216 Sum_probs=186.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEE---e---cccccCC
Q 046397 28 IISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKV---R---LEGMKGR 101 (901)
Q Consensus 28 iI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~v---r---~e~~~~~ 101 (901)
++.|+||||||..+...+.+. +.. |. .++++.|+++|+.|+++++.+.++..+....|... + +......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~--g~--~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LAL--GK--SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHc--CC--eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 478999999998887766544 332 33 45555699999999999998877654322211000 0 0111224
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHH----HHHHHHHhhCCCceEEEeccCCCHHHHHhhhC
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLL----IVLKDLLSRRPELRLVLMSATLDAELFSSYFG 177 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll----~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~ 177 (901)
+.+|+|+|+..+.. .+.++++|||||+|+-+...+-.. .-+........+.++|++|||+..+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 57899999987642 578899999999997443332111 01222334556889999999999887765543
Q ss_pred C-CcEEeeCCcc----ccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhh-----
Q 046397 178 G-ATVINIPGFT----YPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAA----- 247 (901)
Q Consensus 178 ~-~~~i~i~gr~----~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~----- 247 (901)
+ ...+.++.+. .| ....+ |+-... ........+...+.+.++..
T Consensus 150 g~~~~~~l~~r~~~~~~p-~v~vi-d~~~~~------------------------~~~~ls~~l~~~i~~~l~~g~qvLv 203 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPP-EVKLI-DMRKEP------------------------RQSFLSPELITAIEQTLAAGEQSIL 203 (505)
T ss_pred CCeEEeechhhhcCCCCC-eEEEE-eccccc------------------------ccCCccHHHHHHHHHHHHcCCcEEE
Confidence 3 2233333221 11 11111 100000 00000111223333333321
Q ss_pred --cccccchhhhhhcccCCCCCCchh--h-----HHHHHHHHHhhcCC----------CcEEEEcCCHHHHHHHHHHHHh
Q 046397 248 --NFNEYSSQTRESLSCWNPDCIGFN--L-----IEYVLCYICEKERP----------GAVLVFMTGWDDINSLNDKLQA 308 (901)
Q Consensus 248 --~~~~~~~~~~~~l~~~~~~~i~~~--l-----i~~ll~~i~~~~~~----------g~iLVFl~~~~~i~~l~~~L~~ 308 (901)
+..+|.+.....-+.+...+...+ + -..+.||.|..... ..+--+-.| ++++.+.|.+
T Consensus 204 flnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~G---te~~~e~l~~ 280 (505)
T TIGR00595 204 FLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYG---TEQVEEELAK 280 (505)
T ss_pred EEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeeccc---HHHHHHHHHh
Confidence 122333332222222222222111 1 11233444433211 122222233 4555666655
Q ss_pred CccCCCCCceEEEEecCCCCHHHH--HhhcCCCCCCCeEEEEecchhhcccCCCCeEEE--EeCCCccccccccCCCccc
Q 046397 309 NRILGDPTRVLLLTCHGSMASSEQ--RLIFDEPESGVRKIVLATNIAETSITINDVVFV--IDCGKAKETSYDALNNTSC 384 (901)
Q Consensus 309 ~~~~~~~~~~~v~~lhs~l~~~eq--~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~V--Id~G~~k~~~yd~~~~~~~ 384 (901)
. + ....|..+|++++..++ .++++.|++|+.+|||+|++++.|+|+|+|+.| +| +|...+...
T Consensus 281 ~--f---p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd 347 (505)
T TIGR00595 281 L--F---PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPD 347 (505)
T ss_pred h--C---CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCcc
Confidence 3 1 12457889999887655 789999999999999999999999999999987 46 444444443
Q ss_pred cccccccHhcHHHHhhhcCCC-CCCceEE
Q 046397 385 LLPSWISTVSAQQRRGRAGRV-QPGECYR 412 (901)
Q Consensus 385 l~~~~iSka~~~QR~GRAGR~-~~G~c~~ 412 (901)
|...--.-+.+.|++|||||. .+|.++.
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 321112234677999999996 6788773
No 91
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=1.4e-21 Score=208.22 Aligned_cols=312 Identities=19% Similarity=0.189 Sum_probs=194.4
Q ss_pred HHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh--CCccCcEe
Q 046397 13 EKNRLLTA-ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER--GEKLGESV 89 (901)
Q Consensus 13 ~q~~il~~-i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~--~~~~g~~v 89 (901)
.|+..+.+ +..+++|.|++|||+|||+.+.++.|-+ .| ..|++ .|..+|.......+...- .+.+....
T Consensus 24 LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~g--ITIV~-SPLiALIkDQiDHL~~LKVp~~SLNSKl 95 (641)
T KOG0352|consen 24 LQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GG--ITIVI-SPLIALIKDQIDHLKRLKVPCESLNSKL 95 (641)
T ss_pred HHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CC--eEEEe-hHHHHHHHHHHHHHHhcCCchhHhcchh
Confidence 35555554 4678899999999999998877776542 12 34554 599888766655552210 00011000
Q ss_pred eEEEec----c-cccCCCceEEEEcHHHHHH-----HHhcCCCCCCceEEEEecCcccC-cchhHHHHH--HHHHHhhCC
Q 046397 90 GYKVRL----E-GMKGRDTRLLFCTTGILLR-----RLLVDRNLKGVTHVIVDEVHERG-MNEDFLLIV--LKDLLSRRP 156 (901)
Q Consensus 90 Gy~vr~----e-~~~~~~t~Ii~~T~g~Llr-----~L~~~~~l~~~~~IIIDE~HeR~-~~~d~ll~~--lk~ll~~~~ 156 (901)
.-+.|- + ....+++.++|.||++.-. .|..-..-.-+++++|||+|.-+ +..||-..+ |-.+..+.+
T Consensus 96 St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~ 175 (641)
T KOG0352|consen 96 STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP 175 (641)
T ss_pred hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC
Confidence 000000 0 1123568999999985421 22211133456899999999421 223333333 334555788
Q ss_pred CceEEEeccCCCHHHHHhhhC----CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhh
Q 046397 157 ELRLVLMSATLDAELFSSYFG----GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKR 232 (901)
Q Consensus 157 ~~kiIlmSATl~~~~f~~yf~----~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (901)
+...+.++||.+++.-.+.|. .-|+-......|.-..+| .
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFY---------------------------D--------- 219 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFY---------------------------D--------- 219 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhH---------------------------H---------
Confidence 999999999998875544332 111111111111111111 0
Q ss_pred hhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHH---------hhcCCCcEEEEcCCHHHHHHHH
Q 046397 233 KSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYIC---------EKERPGAVLVFMTGWDDINSLN 303 (901)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~---------~~~~~g~iLVFl~~~~~i~~l~ 303 (901)
.+..+.+++-+.. +.+.-.+-+ .....|.-||||.+++++++++
T Consensus 220 -~~~K~~I~D~~~~--------------------------LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~A 272 (641)
T KOG0352|consen 220 -NHMKSFITDCLTV--------------------------LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVA 272 (641)
T ss_pred -HHHHHHhhhHhHh--------------------------HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHH
Confidence 0011111111110 000000100 1234588999999999999999
Q ss_pred HHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcc
Q 046397 304 DKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTS 383 (901)
Q Consensus 304 ~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~ 383 (901)
-.|...++.. ..+|++|...||.++-+.+-+++..||+||+...+|+|-|+|++||+ ||++.++.
T Consensus 273 I~l~~~Gi~A-------~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~A 337 (641)
T KOG0352|consen 273 IMLEIAGIPA-------MAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLA 337 (641)
T ss_pred HHhhhcCcch-------HHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhH
Confidence 9998876654 37999999999999999999999999999999999999999999999 98877665
Q ss_pred ccccccccHhcHHHHhhhcCCCC-CCceEEcCCcchhh
Q 046397 384 CLLPSWISTVSAQQRRGRAGRVQ-PGECYRLYPRCVYD 420 (901)
Q Consensus 384 ~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L~s~~~~~ 420 (901)
-|.|-.|||||.+ +..|-..|++++-+
T Consensus 338 ----------gYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 338 ----------GYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred ----------HHHHhccccccCCCccceeeeecccchH
Confidence 5559999999995 67777777776654
No 92
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1e-21 Score=209.76 Aligned_cols=310 Identities=22% Similarity=0.239 Sum_probs=212.6
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC----cE
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG----ES 88 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g----~~ 88 (901)
.|..-++.+.++.+++-.+-||||||.++.+++++.+.... ....+.++..|+|+||.|..+-++ ++|.-.+ ..
T Consensus 47 iqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvvk-dlgrgt~lr~s~~ 124 (529)
T KOG0337|consen 47 IQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVVK-DLGRGTKLRQSLL 124 (529)
T ss_pred hhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHHH-Hhccccchhhhhh
Confidence 46677888999999999999999999999999999886543 233455555599999999887664 3333221 12
Q ss_pred eeEEEecc--cccCCCceEEEEcHHHHHHHHhcC-CCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEec
Q 046397 89 VGYKVRLE--GMKGRDTRLLFCTTGILLRRLLVD-RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMS 164 (901)
Q Consensus 89 vGy~vr~e--~~~~~~t~Ii~~T~g~Llr~L~~~-~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmS 164 (901)
+|+.--.+ .....+++|+++|||+++.....- -.|+.+.+||+||++. +...-+...+.+++.+. .+.+.++||
T Consensus 125 ~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr--lfemgfqeql~e~l~rl~~~~QTllfS 202 (529)
T KOG0337|consen 125 VGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR--LFEMGFQEQLHEILSRLPESRQTLLFS 202 (529)
T ss_pred cccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH--HHhhhhHHHHHHHHHhCCCcceEEEEe
Confidence 33221111 123457899999999988654322 2688999999999993 33322333455555544 456999999
Q ss_pred cCCCHH--HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHH
Q 046397 165 ATLDAE--LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVED 242 (901)
Q Consensus 165 ATl~~~--~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (901)
||++.. .|.+ .|-..|+-+. ++ +- ..+. +
T Consensus 203 atlp~~lv~fak----------aGl~~p~lVR-ld-ve----------tkis---------------------------e 233 (529)
T KOG0337|consen 203 ATLPRDLVDFAK----------AGLVPPVLVR-LD-VE----------TKIS---------------------------E 233 (529)
T ss_pred ccCchhhHHHHH----------ccCCCCceEE-ee-hh----------hhcc---------------------------h
Confidence 999866 3332 2333444433 11 00 0000 0
Q ss_pred HHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHh-hcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEE
Q 046397 243 TLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICE-KERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLL 321 (901)
Q Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~-~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~ 321 (901)
.+... + ..+..+-.+..+.+++. ...+.+.+||+++..+++.+...|...+....
T Consensus 234 ~lk~~-f----------------~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s------- 289 (529)
T KOG0337|consen 234 LLKVR-F----------------FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGS------- 289 (529)
T ss_pred hhhhh-e----------------eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCcc-------
Confidence 00000 0 00000111122333333 23356899999999999999999998765543
Q ss_pred EecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhh
Q 046397 322 TCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGR 401 (901)
Q Consensus 322 ~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GR 401 (901)
.++|+|.+..|..-+..|..++..++|.|++|.+|+|||-..-||+ ||.+..-..++ ||.||
T Consensus 290 ~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd~p~~~klFv----------hRVgr 351 (529)
T KOG0337|consen 290 DIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YDFPPDDKLFV----------HRVGR 351 (529)
T ss_pred ccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------ccCCCCCceEE----------EEecc
Confidence 6899999999999999999999999999999999999999999999 88887777777 99999
Q ss_pred cCCCC-CCceEEcCCcc
Q 046397 402 AGRVQ-PGECYRLYPRC 417 (901)
Q Consensus 402 AGR~~-~G~c~~L~s~~ 417 (901)
+.|.+ .|..|.+....
T Consensus 352 ~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 352 VARAGRTGRAYSLVAST 368 (529)
T ss_pred hhhccccceEEEEEecc
Confidence 99884 79999987654
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.87 E-value=1.2e-20 Score=237.15 Aligned_cols=276 Identities=19% Similarity=0.195 Sum_probs=172.0
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
....++.|.+.++.+..+++++++||||||||+.+ +++..... .++. +++++.|+|+||.|+++++..... ..+
T Consensus 76 g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~--~~g~--~vLIL~PTreLa~Qi~~~l~~l~~-~~~ 149 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLA--KKGK--RCYIILPTTLLVIQVAEKISSLAE-KAG 149 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHH--hcCC--eEEEEeCHHHHHHHHHHHHHHHHH-hcC
Confidence 34678999999999999999999999999999733 44443332 2233 455566999999999998866542 211
Q ss_pred c---Eee-EEEec---------ccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCc---chhHHHH----
Q 046397 87 E---SVG-YKVRL---------EGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGM---NEDFLLI---- 146 (901)
Q Consensus 87 ~---~vG-y~vr~---------e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~---~~d~ll~---- 146 (901)
. .+| |.-.. +.......+|+|+||+.|.+.+..-.. ++++|||||||+..- +.|.++.
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~--~~~~iVvDEaD~~L~~~k~vd~il~llGF 227 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP--KFDFIFVDDVDALLKASKNVDKLLKLLGF 227 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC--CCCEEEEeChHhhhhccccHHHHHHHcCC
Confidence 1 111 11000 111223589999999999887654221 899999999995210 1111111
Q ss_pred ---HHHH----------------------HHhhC-CCc--eEEEeccCC-CHHHHHhhhCCCcEEeeCCccc---cceEE
Q 046397 147 ---VLKD----------------------LLSRR-PEL--RLVLMSATL-DAELFSSYFGGATVINIPGFTY---PVRTH 194 (901)
Q Consensus 147 ---~lk~----------------------ll~~~-~~~--kiIlmSATl-~~~~f~~yf~~~~~i~i~gr~~---pV~~~ 194 (901)
.+.. ++... +.. .++++|||. +...-..+|...-.+.+..... .+...
T Consensus 228 ~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~ 307 (1171)
T TIGR01054 228 SEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDV 307 (1171)
T ss_pred CHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEE
Confidence 1111 11111 222 367789995 3332223343322222221110 11111
Q ss_pred eccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHH
Q 046397 195 FLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIE 274 (901)
Q Consensus 195 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~ 274 (901)
|... +. ....
T Consensus 308 ~~~~-------------------------------------------------------------------~~-~~~~-- 317 (1171)
T TIGR01054 308 YVED-------------------------------------------------------------------ED-LKET-- 317 (1171)
T ss_pred EEec-------------------------------------------------------------------cc-HHHH--
Confidence 1100 00 0001
Q ss_pred HHHHHHHhhcCCCcEEEEcCCH---HHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEe--
Q 046397 275 YVLCYICEKERPGAVLVFMTGW---DDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLA-- 349 (901)
Q Consensus 275 ~ll~~i~~~~~~g~iLVFl~~~---~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIva-- 349 (901)
+..+.+.. +..+|||+++. +.++.+++.|...+ +.+..+||+++. .+++.|++|+.+||||
T Consensus 318 --L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g-------~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata 383 (1171)
T TIGR01054 318 --LLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHG-------VKAVAYHATKPK----EDYEKFAEGEIDVLIGVA 383 (1171)
T ss_pred --HHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCC-------ceEEEEeCCCCH----HHHHHHHcCCCCEEEEec
Confidence 11222222 35789999998 99999999998764 346799999973 6889999999999999
Q ss_pred --cchhhcccCCCC-eEEEEeCCCcccc
Q 046397 350 --TNIAETSITIND-VVFVIDCGKAKET 374 (901)
Q Consensus 350 --TniaetGIdIp~-V~~VId~G~~k~~ 374 (901)
|+++++|||||+ |+|||++|.|+.+
T Consensus 384 ~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 384 SYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred cccCcccccCCCCccccEEEEECCCCEE
Confidence 599999999999 8999999999863
No 94
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.86 E-value=2.1e-20 Score=217.84 Aligned_cols=342 Identities=19% Similarity=0.243 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHH--HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 8 LPAYKEKNRLLT--AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 8 LPi~~~q~~il~--~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
+-.|.+|.+.+. .+.++++.|.+.||+.|||.++-+.++...+...+. +. ...|-..-+..-....+.+. ..+
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~--~l--lilp~vsiv~Ek~~~l~~~~-~~~ 296 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRN--VL--LILPYVSIVQEKISALSPFS-IDL 296 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhc--ee--EecceeehhHHHHhhhhhhc-ccc
Confidence 446788888764 466889999999999999999998888887765442 22 22266555555444443322 223
Q ss_pred CcEe-eEEEecccc-cCCCceEEEEcHH---HHHHHHhcCCCCCCceEEEEecCc-----ccCcchhHHHHHHHHHHhh-
Q 046397 86 GESV-GYKVRLEGM-KGRDTRLLFCTTG---ILLRRLLVDRNLKGVTHVIVDEVH-----ERGMNEDFLLIVLKDLLSR- 154 (901)
Q Consensus 86 g~~v-Gy~vr~e~~-~~~~t~Ii~~T~g---~Llr~L~~~~~l~~~~~IIIDE~H-----eR~~~~d~ll~~lk~ll~~- 154 (901)
|-.| +|.-++... ......+.+||.+ +|.+.|.....+..++.|||||.| +||..-+.+ +.+++-.
T Consensus 297 G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~---l~k~~y~~ 373 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL---LAKILYEN 373 (1008)
T ss_pred CCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH---HHHHHHhc
Confidence 3222 233222211 1234789999988 455666656678889999999999 565544433 3333322
Q ss_pred -CCCceEEEeccCC-CHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhh
Q 046397 155 -RPELRLVLMSATL-DAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKR 232 (901)
Q Consensus 155 -~~~~kiIlmSATl-~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (901)
...+++|+||||+ |.+.+++|+. +.+..-.-|.-|..++-. .|.. .+ .. .
T Consensus 374 ~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik------~G~~--i~------------~~------~- 425 (1008)
T KOG0950|consen 374 LETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIK------PGSL--IY------------ES------S- 425 (1008)
T ss_pred cccceeEeeeecccCChHHHHHHhh-hhheecccCcccchhccC------CCcc--cc------------cc------h-
Confidence 2347899999999 7778888886 333333333333322210 0000 00 00 0
Q ss_pred hhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcC-CCcEEEEcCCHHHHHHHHHHHHhC--
Q 046397 233 KSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKER-PGAVLVFMTGWDDINSLNDKLQAN-- 309 (901)
Q Consensus 233 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~-~g~iLVFl~~~~~i~~l~~~L~~~-- 309 (901)
. ...+.+.... + .......|+ |.+.. ...+..+ +.++|||||++..++.++..+...
T Consensus 426 r---~~~lr~ia~l-----~----~~~~g~~dp-----D~~v~---L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vp 485 (1008)
T KOG0950|consen 426 R---NKVLREIANL-----Y----SSNLGDEDP-----DHLVG---LCTETAPEGSSVLVFCPSKKNCENVASLIAKKVP 485 (1008)
T ss_pred h---hHHHHHhhhh-----h----hhhcccCCC-----cceee---ehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhh
Confidence 0 0011111000 0 000000111 11111 1112223 345999999999999887665431
Q ss_pred ---------c--------------------cCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC
Q 046397 310 ---------R--------------------ILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN 360 (901)
Q Consensus 310 ---------~--------------------~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp 360 (901)
+ .......+.+.++|++++.++|+.|...|+.|...|++||+.+..|++.|
T Consensus 486 k~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLP 565 (1008)
T KOG0950|consen 486 KHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLP 565 (1008)
T ss_pred HhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCC
Confidence 0 01112345688999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcchh
Q 046397 361 DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCVY 419 (901)
Q Consensus 361 ~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~~ 419 (901)
..+++|-.-. +.....++.+|+||.|||||.+ -|.++.++.+..-
T Consensus 566 ArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 566 ARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred cceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 9999996322 2334467889999999999994 6899999876543
No 95
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=9e-20 Score=217.83 Aligned_cols=117 Identities=24% Similarity=0.282 Sum_probs=94.3
Q ss_pred HHHHHHHHhh-cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecch
Q 046397 274 EYVLCYICEK-ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNI 352 (901)
Q Consensus 274 ~~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTni 352 (901)
..++..+... ....++||||.+.+.++.+++.|...++. +..+||.+...++..+...+.+| .|+||||+
T Consensus 415 ~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~-------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdm 485 (790)
T PRK09200 415 KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIP-------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNM 485 (790)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC-------EEEecCCccHHHHHHHHHcCCCC--eEEEEccc
Confidence 3344444332 35679999999999999999999987543 55899999999988888888776 79999999
Q ss_pred hhcccCC---CCeE-----EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 353 AETSITI---NDVV-----FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 353 aetGIdI---p~V~-----~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|++|+|| |+|. +||+ ||.+. |...+.||+||+||. .+|.|+.+++.+
T Consensus 486 AgRG~DI~l~~~V~~~GGL~VI~--------~d~p~----------s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 486 AGRGTDIKLGEGVHELGGLAVIG--------TERME----------SRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred hhcCcCCCcccccccccCcEEEe--------ccCCC----------CHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 9999999 7998 9999 55554 344666999999999 589999888753
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=9.5e-20 Score=219.06 Aligned_cols=282 Identities=22% Similarity=0.272 Sum_probs=203.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEeccc--------
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEG-------- 97 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~-------- 97 (901)
+=+|||.-|-|||..+.-.+.... ..|+.+.+ ++||.+||.|-++.+.+.+. .++..|+.--||.+
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkAV---~~GKQVAv--LVPTTlLA~QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il 690 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKAV---MDGKQVAV--LVPTTLLAQQHYETFKERFA-GFPVRIEVLSRFRSAKEQKEIL 690 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHHh---cCCCeEEE--EcccHHhHHHHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHH
Confidence 458999999999988887776654 23444444 44999999999999977664 44445554445532
Q ss_pred --ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHHH-h
Q 046397 98 --MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFS-S 174 (901)
Q Consensus 98 --~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~-~ 174 (901)
......+|+++|... |..+-.+++++++||||-|..|+..-- .+-..+.++.++-||||+=+..+. .
T Consensus 691 ~~la~G~vDIvIGTHrL----L~kdv~FkdLGLlIIDEEqRFGVk~KE------kLK~Lr~~VDvLTLSATPIPRTL~Ms 760 (1139)
T COG1197 691 KGLAEGKVDIVIGTHRL----LSKDVKFKDLGLLIIDEEQRFGVKHKE------KLKELRANVDVLTLSATPIPRTLNMS 760 (1139)
T ss_pred HHHhcCCccEEEechHh----hCCCcEEecCCeEEEechhhcCccHHH------HHHHHhccCcEEEeeCCCCcchHHHH
Confidence 224578999999953 344557899999999999987776632 222345789999999997333322 2
Q ss_pred hhC--CCcEEee-CCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccc
Q 046397 175 YFG--GATVINI-PGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNE 251 (901)
Q Consensus 175 yf~--~~~~i~i-~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 251 (901)
.-| +-.+|.. |...+||+.+..+.- ...+.+++.
T Consensus 761 m~GiRdlSvI~TPP~~R~pV~T~V~~~d-------------------------------------~~~ireAI~------ 797 (1139)
T COG1197 761 LSGIRDLSVIATPPEDRLPVKTFVSEYD-------------------------------------DLLIREAIL------ 797 (1139)
T ss_pred HhcchhhhhccCCCCCCcceEEEEecCC-------------------------------------hHHHHHHHH------
Confidence 222 2233433 345678887764320 011222221
Q ss_pred cchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHH
Q 046397 252 YSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSE 331 (901)
Q Consensus 252 ~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~e 331 (901)
..+ ..+|++..-.|.+++|+.+++.|++.- ....|..-||.|+..+
T Consensus 798 --------------------------REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LV-----PEarI~vaHGQM~e~e 843 (1139)
T COG1197 798 --------------------------REL---LRGGQVFYVHNRVESIEKKAERLRELV-----PEARIAVAHGQMRERE 843 (1139)
T ss_pred --------------------------HHH---hcCCEEEEEecchhhHHHHHHHHHHhC-----CceEEEEeecCCCHHH
Confidence 112 467999999999999999999999862 3456888999999999
Q ss_pred HHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCce
Q 046397 332 QRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGEC 410 (901)
Q Consensus 332 q~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c 410 (901)
-..++..|-+|..+|+|||.|.|+|||||+++-+|- .++.. .--|+..|-+||+||. ..+.|
T Consensus 844 LE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~AD~---------fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 844 LEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERADK---------FGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred HHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecccc---------ccHHHHHHhccccCCccceEEE
Confidence 999999999999999999999999999999998874 22221 1224566999999999 68999
Q ss_pred EEcCCcc
Q 046397 411 YRLYPRC 417 (901)
Q Consensus 411 ~~L~s~~ 417 (901)
|.||+..
T Consensus 907 Yfl~p~~ 913 (1139)
T COG1197 907 YFLYPPQ 913 (1139)
T ss_pred EEeecCc
Confidence 9999863
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.84 E-value=5.6e-20 Score=216.18 Aligned_cols=107 Identities=22% Similarity=0.232 Sum_probs=89.6
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCC--
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIND-- 361 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~-- 361 (901)
..+.++||||.+.+..+.+.+.|...++. ...+|+. ..+|...+..+..+...|+||||+|++|+||+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~-------~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~ 473 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIP-------HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEE 473 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCC-------eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccc
Confidence 35679999999999999999999987654 3378998 678888888899999999999999999999998
Q ss_pred -----eEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 362 -----VVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 362 -----V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
..+||.+.++. |+..+.||+||+||. .||.+..+.+.+
T Consensus 474 V~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 474 VKELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred hhhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEecc
Confidence 55999844443 555777999999999 589888877654
No 98
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.84 E-value=3.7e-20 Score=224.16 Aligned_cols=308 Identities=18% Similarity=0.174 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
..|.+++.+++.+++++|..|||.|||..+.++.+-. + . .-+|+.|-..|...+...+. ..+......-+-
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~-g-itvVISPL~SLm~DQv~~L~-~~~I~a~~L~s~ 337 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------G-G-VTVVISPLISLMQDQVTHLS-KKGIPACFLSSI 337 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------C-C-ceEEeccHHHHHHHHHHhhh-hcCcceeecccc
Confidence 4578888999999999999999999996665543311 1 1 44555699999877665551 111111111111
Q ss_pred EEe------cccccC--CCceEEEEcHHHHHHHHh---cCCCCCC---ceEEEEecCcccC-cchhHHHHH--HHHHHhh
Q 046397 92 KVR------LEGMKG--RDTRLLFCTTGILLRRLL---VDRNLKG---VTHVIVDEVHERG-MNEDFLLIV--LKDLLSR 154 (901)
Q Consensus 92 ~vr------~e~~~~--~~t~Ii~~T~g~Llr~L~---~~~~l~~---~~~IIIDE~HeR~-~~~d~ll~~--lk~ll~~ 154 (901)
+.. +..... +..+|+|.||+.+...-. ....+.. +..+||||||.-+ +..||--.+ +..+..+
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~ 417 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR 417 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh
Confidence 111 111112 357999999997764211 1113333 8899999999421 334443333 3445557
Q ss_pred CCCceEEEeccCCCHHHHHh---hhC--CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 155 RPELRLVLMSATLDAELFSS---YFG--GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 155 ~~~~kiIlmSATl~~~~f~~---yf~--~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
++...+|.+|||.....-.+ -++ +++ +....+..|-- |++ ..+
T Consensus 418 ~~~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL--~ye---------V~~-------------------- 465 (941)
T KOG0351|consen 418 FPGVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNL--KYE---------VSP-------------------- 465 (941)
T ss_pred CCCCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCc--eEE---------EEe--------------------
Confidence 78889999999986543332 222 222 11111110000 000 000
Q ss_pred hhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhC
Q 046397 230 RKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQAN 309 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 309 (901)
+. +.+....++..+-...+.+.+||+|.++.+++.+...|...
T Consensus 466 -k~------------------------------------~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~ 508 (941)
T KOG0351|consen 466 -KT------------------------------------DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL 508 (941)
T ss_pred -cc------------------------------------CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh
Confidence 00 00011112333344567889999999999999999999987
Q ss_pred ccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccccc
Q 046397 310 RILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSW 389 (901)
Q Consensus 310 ~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~ 389 (901)
+.. ...+|++|+..+|..|-+.|-.++.+||+||=...+|||-|||++||++++||
T Consensus 509 ~~~-------a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk----------------- 564 (941)
T KOG0351|consen 509 GKS-------AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK----------------- 564 (941)
T ss_pred chh-------hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch-----------------
Confidence 644 33899999999999999999999999999999999999999999999977776
Q ss_pred ccHhcHHHHhhhcCCC-CCCceEEcCCcchhhhc
Q 046397 390 ISTVSAQQRRGRAGRV-QPGECYRLYPRCVYDAF 422 (901)
Q Consensus 390 iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~~l 422 (901)
|-..|.|-+|||||. .+-.|..+|.-.++..+
T Consensus 565 -s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l 597 (941)
T KOG0351|consen 565 -SFEGYYQEAGRAGRDGLPSSCVLLYGYADISEL 597 (941)
T ss_pred -hHHHHHHhccccCcCCCcceeEEecchhHHHHH
Confidence 334677999999999 58999999998877543
No 99
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=5.8e-19 Score=215.88 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=95.3
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCC--CCeEEEEecchh
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPES--GVRKIVLATNIA 353 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~--g~~kIIvaTnia 353 (901)
.+..+.+.....++||||.++..+..+.+.|... ..+.+..+||+|+..+|.++++.|.. |..+|+|||+++
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvg 556 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIG 556 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhh
Confidence 3445555556789999999999999999999542 12456789999999999999999987 469999999999
Q ss_pred hcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCC-C--ceEEcCCcc
Q 046397 354 ETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQP-G--ECYRLYPRC 417 (901)
Q Consensus 354 etGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~-G--~c~~L~s~~ 417 (901)
++|+|++.+++||+ ||.+.+...|. ||+||+||.+. | ..|.++.+.
T Consensus 557 seGlNlq~a~~VIn--------fDlP~nP~~~e----------QRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 557 SEGRNFQFASHLVL--------FDLPFNPDLLE----------QRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred ccCCCcccccEEEE--------ecCCCCHHHHH----------HHhcccccCCCCceEEEEEccCCC
Confidence 99999999999999 88877666554 99999999843 3 445555544
No 100
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.3e-18 Score=203.87 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=84.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC---Ce
Q 046397 286 PGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN---DV 362 (901)
Q Consensus 286 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp---~V 362 (901)
+.++|||+++.++++.+++.|...++ .+..+||.++..++..+...+.+ ..|+||||+|.+|+||+ +|
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi-------~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V 543 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGL-------PHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGV 543 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC-------CEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccch
Confidence 56899999999999999999998654 35689999876666655555444 46999999999999999 77
Q ss_pred E-----EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 363 V-----FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 363 ~-----~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
. +||+ ||.+. |...|.||+||+||. .+|.|+.+++.+
T Consensus 544 ~~~GGLhVI~--------~d~P~----------s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 544 AARGGLHVIL--------TERHD----------SARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred hhcCCCEEEE--------cCCCC----------CHHHHHHhcccccCCCCCeEEEEEechh
Confidence 6 9999 55554 344566999999999 589999998753
No 101
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.79 E-value=1e-19 Score=170.66 Aligned_cols=106 Identities=31% Similarity=0.522 Sum_probs=76.1
Q ss_pred HHHHHHHHhCCCCCCCCC-------ccccCCCCHHHHHHHHHhccCCCccccccCCCCCcccccc-CCeEEEccCCccCC
Q 046397 595 KEFLSLLKDTGLVDCDTS-------ICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTME-DGQVFLYSNSVNAR 666 (901)
Q Consensus 595 ~ql~~~l~~~~~~~~~~~-------~~n~~s~~~~li~a~l~aglypnva~~~~~~~~~~~~t~~-~~~v~ihpsSv~~~ 666 (901)
+||.++|++.|++..+.. ..+.++.++.+|+++||+|||||||+.. ....|+|.. +..|+|||+|++++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~---~~~~y~~~~~~~~v~iHPsS~l~~ 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRD---NKGSYKTLSNGQPVFIHPSSVLFK 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE----TTSSEEETTTG-EEEE-TTSTTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeC---CCCCEEEecCCCEEEEecCccccc
Confidence 599999999999865431 1122225679999999999999999754 235688884 44699999999964
Q ss_pred cCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCcc
Q 046397 667 ESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSI 706 (901)
Q Consensus 667 ~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~ 706 (901)
.+++||||+|+++|++.|||+||+|+|.||++|||++
T Consensus 78 ---~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 78 ---KPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp ---TT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ---cccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 3568999999999999999999999999999999974
No 102
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=174.51 Aligned_cols=276 Identities=18% Similarity=0.163 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
+.|.+.+++...+..+++..|||.|||+.+.++.+-. .....++| |...|.....-.+.+ +|......-.-
T Consensus 97 plq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~--plislmedqil~lkq-lgi~as~lnan 167 (695)
T KOG0353|consen 97 PLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVIC--PLISLMEDQILQLKQ-LGIDASMLNAN 167 (695)
T ss_pred hhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeec--hhHHHHHHHHHHHHH-hCcchhhccCc
Confidence 4577788888899999999999999998877776531 12334555 988777554444421 22111000000
Q ss_pred E-----Eecc---cccCCCceEEEEcHHHHH------HHHhcCCCCCCceEEEEecCcc-----cCcchhH-HHHHHHHH
Q 046397 92 K-----VRLE---GMKGRDTRLLFCTTGILL------RRLLVDRNLKGVTHVIVDEVHE-----RGMNEDF-LLIVLKDL 151 (901)
Q Consensus 92 ~-----vr~e---~~~~~~t~Ii~~T~g~Ll------r~L~~~~~l~~~~~IIIDE~He-----R~~~~d~-ll~~lk~l 151 (901)
. -+.+ .......+++|.||+.+- +.|...-....+..|-|||+|. .+...|+ .+.+|+
T Consensus 168 sske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk-- 245 (695)
T KOG0353|consen 168 SSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK-- 245 (695)
T ss_pred ccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH--
Confidence 0 0111 112245789999999654 3333333556688999999994 3444553 344444
Q ss_pred HhhCCCceEEEeccCCCHHHHHh---hhCC-CcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcc
Q 046397 152 LSRRPELRLVLMSATLDAELFSS---YFGG-ATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQ 227 (901)
Q Consensus 152 l~~~~~~kiIlmSATl~~~~f~~---yf~~-~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (901)
+.+++..+|+++||.....+.+ .+.- .-.-.-.|+..|--.+-. .+
T Consensus 246 -rqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev-----------------------------~q 295 (695)
T KOG0353|consen 246 -RQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEV-----------------------------RQ 295 (695)
T ss_pred -HhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEe-----------------------------ee
Confidence 4788999999999974432221 1110 000000111111000000 00
Q ss_pred cchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHH
Q 046397 228 APRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQ 307 (901)
Q Consensus 228 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~ 307 (901)
.|. -..+-++++...|.....+..-||||-++.+++.++..|+
T Consensus 296 kp~-------------------------------------n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alk 338 (695)
T KOG0353|consen 296 KPG-------------------------------------NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALK 338 (695)
T ss_pred CCC-------------------------------------ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHH
Confidence 000 0011233334444444556677999999999999999999
Q ss_pred hCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcc
Q 046397 308 ANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAK 372 (901)
Q Consensus 308 ~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k 372 (901)
.+++... .+|+.|.++++.-+-+.+-.|++.|||||-....|||-|||++||+-.++|
T Consensus 339 n~gi~a~-------~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 339 NHGIHAG-------AYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred hcCcccc-------ccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 9887654 789999999999999999999999999999999999999999999966665
No 103
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.75 E-value=3.3e-18 Score=156.66 Aligned_cols=91 Identities=53% Similarity=0.847 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHH--HHHh
Q 046397 468 NAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAE--AAKS 545 (901)
Q Consensus 468 ~al~~L~~~gald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~--~~~~ 545 (901)
+|++.|+.+||||++++||++|+.|+.||++|++||||++|+.++|++++++|||+|++++||..|.++++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999876554433 2444
Q ss_pred hc---------CCCCCcHHHHH
Q 046397 546 QF---------SHDYSDHLALV 558 (901)
Q Consensus 546 ~f---------~~~~sDhl~~l 558 (901)
+| .+..|||++++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 58899999986
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.74 E-value=8e-17 Score=196.35 Aligned_cols=313 Identities=23% Similarity=0.199 Sum_probs=180.4
Q ss_pred CcHHHHHHHHHHHHc---CC-eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 9 PAYKEKNRLLTAISQ---NQ-VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 9 Pi~~~q~~il~~i~~---~~-~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
+.++.|..+++.+.+ .+ .+++.+|||+|||++...+.+...... .....+++.+-|.|.+..++++++....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 346677777777653 45 889999999999999888877655432 2245578888899999999999998654432
Q ss_pred --cCc-EeeEEE---------------eccc-ccCCCceEEEEcHHHHHHHHhcCCCC-----CCceEEEEecCcccCcc
Q 046397 85 --LGE-SVGYKV---------------RLEG-MKGRDTRLLFCTTGILLRRLLVDRNL-----KGVTHVIVDEVHERGMN 140 (901)
Q Consensus 85 --~g~-~vGy~v---------------r~e~-~~~~~t~Ii~~T~g~Llr~L~~~~~l-----~~~~~IIIDE~HeR~~~ 140 (901)
.+. ..|... +..+ ....-..+.++|+-..+......... -..+++|+||+|-..-.
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 122 122111 0000 00011223334443333211111111 13479999999953333
Q ss_pred h--hHHHHHHHHHHhhCCCceEEEeccCCCHH---HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcc
Q 046397 141 E--DFLLIVLKDLLSRRPELRLVLMSATLDAE---LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDD 215 (901)
Q Consensus 141 ~--d~ll~~lk~ll~~~~~~kiIlmSATl~~~---~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~ 215 (901)
+ -+++.++..+ ..-+.++|+||||++.. .+.++++....+...-...|....+.
T Consensus 354 ~~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~------------------- 412 (733)
T COG1203 354 TMLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPG------------------- 412 (733)
T ss_pred chHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccc-------------------
Confidence 2 1222222221 23478999999999875 44455543222211100000000000
Q ss_pred hhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCC
Q 046397 216 YGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTG 295 (901)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~ 295 (901)
.. ++... .+++... ..... .-...-..+++++|.++|
T Consensus 413 --~~----------~~~~~----~~~~~~~------------------------~~~~~---~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 413 --LK----------RKERV----DVEDGPQ------------------------EELIE---LISEEVKEGKKVLVIVNT 449 (733)
T ss_pred --cc----------cccch----hhhhhhh------------------------Hhhhh---cchhhhccCCcEEEEEec
Confidence 00 00000 0000000 00000 001112456899999999
Q ss_pred HHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCC----CCCCeEEEEecchhhcccCCCCeEEEEeCCCc
Q 046397 296 WDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEP----ESGVRKIVLATNIAETSITINDVVFVIDCGKA 371 (901)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f----~~g~~kIIvaTniaetGIdIp~V~~VId~G~~ 371 (901)
+..+.++++.|+..+. .++.+||.+...+|.+.++.. ..+.-.|+|||++.|.|+||+ .+++|
T Consensus 450 V~~Aie~Y~~Lk~~~~-------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI----- 516 (733)
T COG1203 450 VDRAIELYEKLKEKGP-------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI----- 516 (733)
T ss_pred HHHHHHHHHHHHhcCC-------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee-----
Confidence 9999999999998643 478999999999998776632 456788999999999999996 55555
Q ss_pred cccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcC
Q 046397 372 KETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLY 414 (901)
Q Consensus 372 k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~ 414 (901)
+...+-.+..||+||++|.+ +|..|..-
T Consensus 517 ---------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~ 547 (733)
T COG1203 517 ---------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYN 547 (733)
T ss_pred ---------------ecCCCHHHHHHHHHHHhhcccccCCceeEee
Confidence 22334446669999999997 45555543
No 105
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.73 E-value=1.7e-16 Score=183.95 Aligned_cols=368 Identities=16% Similarity=0.193 Sum_probs=199.1
Q ss_pred HHHHHHHHHHH----Hc-CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 11 YKEKNRLLTAI----SQ-NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 11 ~~~q~~il~~i----~~-~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
..||..++..+ .+ ++.++|++.||+|||..+.++|. .++..+. ..+|+++.-|++|..|....+...+-.
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~-rL~r~~~--~KRVLFLaDR~~Lv~QA~~af~~~~P~-- 241 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID-RLIKSGW--VKRVLFLADRNALVDQAYGAFEDFLPF-- 241 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH-HHHhcch--hheeeEEechHHHHHHHHHHHHHhCCC--
Confidence 45666555444 33 45699999999999977666654 4444333 347888889999999988777665432
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHHhcC-C-----CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-R-----NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-~-----~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
+..+.. -.+......++|.++|...+...+... . ....+++||||||| ||+..+.- .++......+
T Consensus 242 ~~~~n~--i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-----~I~dYFdA~~ 313 (875)
T COG4096 242 GTKMNK--IEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-----SILDYFDAAT 313 (875)
T ss_pred ccceee--eecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-----HHHHHHHHHH
Confidence 222211 111222335799999999988877654 1 34569999999999 77766532 3333332233
Q ss_pred EEEeccCCCHH---HHHhhhCCCcEEeeC-------CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 160 LVLMSATLDAE---LFSSYFGGATVINIP-------GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 160 iIlmSATl~~~---~f~~yf~~~~~i~i~-------gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
++++||+... .=..||+|.|+.... |..-|-...-.+--....|+.+..-+
T Consensus 314 -~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s------------------ 374 (875)
T COG4096 314 -QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS------------------ 374 (875)
T ss_pred -HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccc------------------
Confidence 4459998542 223577655443321 21111111111111112222222110
Q ss_pred hhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhh--c--CCCcEEEEcCCHHHHHHHHHH
Q 046397 230 RKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEK--E--RPGAVLVFMTGWDDINSLNDK 305 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~--~--~~g~iLVFl~~~~~i~~l~~~ 305 (901)
.+.+...+.+.+ +...++.. .+..-..-....+.+...+.+.+.. . ..+++||||.+.++++.+.+.
T Consensus 375 -erek~~g~~i~~--dd~~~~~~------d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~ 445 (875)
T COG4096 375 -EREKLQGEAIDE--DDQNFEAR------DFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREA 445 (875)
T ss_pred -hhhhhhccccCc--cccccccc------ccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHH
Confidence 000000000000 00000000 0000000011123455556666655 2 257999999999999999999
Q ss_pred HHhCccCCCCCceEEEEecCCCCHHHHHhhcCCC--CCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcc
Q 046397 306 LQANRILGDPTRVLLLTCHGSMASSEQRLIFDEP--ESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTS 383 (901)
Q Consensus 306 L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f--~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~ 383 (901)
|....... ..-.+..+.+.-.. .|..| +.| ++.-.+|.++.+++.||||+|.|..+|- +..
T Consensus 446 ~~~~ype~--~~~~a~~IT~d~~~-~q~~I-d~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF---------~r~---- 508 (875)
T COG4096 446 LVNEYPEY--NGRYAMKITGDAEQ-AQALI-DNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF---------DRK---- 508 (875)
T ss_pred HHHhCccc--cCceEEEEeccchh-hHHHH-HHHHhcCCCCceEEehhhhhcCCCchheeeeee---------hhh----
Confidence 98753321 11223334444322 23322 222 2344689999999999999999998883 221
Q ss_pred ccccccccHhcHHHHhhhcCCCCC--C------ceEEcCCc---chhhhcccCCCCcccccCccchhhh
Q 046397 384 CLLPSWISTVSAQQRRGRAGRVQP--G------ECYRLYPR---CVYDAFAEYQLPEILRTPLQSLCLQ 441 (901)
Q Consensus 384 ~l~~~~iSka~~~QR~GRAGR~~~--G------~c~~L~s~---~~~~~l~~~~~PEi~r~~L~~~~L~ 441 (901)
+ -|+.-|+|++||+-|..+ | ..|.+|.- -.|-++.+...++-.+.+|+.-++.
T Consensus 509 --V---rSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~ 572 (875)
T COG4096 509 --V---RSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFA 572 (875)
T ss_pred --h---hhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhh
Confidence 1 388999999999999853 2 23444432 1222344444555555555543333
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.71 E-value=2.9e-16 Score=157.44 Aligned_cols=154 Identities=22% Similarity=0.230 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
++|.++++.+.+++++++.||||+|||+.+..+++..+.+. + ...++++.|+++++.|+.+++...++..-.....+
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~--~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K--DARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S--SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C--CceEEEEeecccccccccccccccccccccccccc
Confidence 57999999999999999999999999999999999877543 2 23566666999999999999987776521111111
Q ss_pred EEec-------ccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh---hCCCceE
Q 046397 92 KVRL-------EGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS---RRPELRL 160 (901)
Q Consensus 92 ~vr~-------e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~---~~~~~ki 160 (901)
... ......+.+|+|+||+.|++.+.... .+.++++||+||+|+.+.. .....+..++. ..++.++
T Consensus 79 -~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~--~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 79 -HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE--TFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp -STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT--THHHHHHHHHHHSHTTTTSEE
T ss_pred -cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc--cHHHHHHHHHHHhcCCCCCcE
Confidence 100 01112468999999999999888643 5666999999999974332 11223333333 3457899
Q ss_pred EEeccCCCHHHH
Q 046397 161 VLMSATLDAELF 172 (901)
Q Consensus 161 IlmSATl~~~~f 172 (901)
|+||||++ ...
T Consensus 156 i~~SAT~~-~~~ 166 (169)
T PF00270_consen 156 ILLSATLP-SNV 166 (169)
T ss_dssp EEEESSST-HHH
T ss_pred EEEeeCCC-hhH
Confidence 99999998 443
No 107
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=9.2e-16 Score=183.19 Aligned_cols=127 Identities=20% Similarity=0.142 Sum_probs=92.6
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 4 FRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 4 ~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
.|+.|-...|--+++-.+.=++--|..++||+|||.++.++++..++. |.. +.|+.|++.||.|.++.+.... .
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~--V~VvTpn~yLA~qd~e~m~~l~-~ 148 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---GRG--VHIVTVNDYLAKRDSQWMKPIY-E 148 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---CCC--EEEEcCCHHHHHHHHHHHHHHh-c
Confidence 355667777777788888777777999999999999999998876653 233 4444599999999998886654 3
Q ss_pred ccCcEeeEEEeccc----ccCCCceEEEEcHHHH-HHHHhcCC--CC-----CCceEEEEecCcc
Q 046397 84 KLGESVGYKVRLEG----MKGRDTRLLFCTTGIL-LRRLLVDR--NL-----KGVTHVIVDEVHE 136 (901)
Q Consensus 84 ~~g~~vGy~vr~e~----~~~~~t~Ii~~T~g~L-lr~L~~~~--~l-----~~~~~IIIDE~He 136 (901)
.+|-.||.-+.... ...-.++|+|+||+.| +..|..+. .+ ..+.++||||||.
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 45666765433211 1112579999999999 77776553 22 5899999999993
No 108
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=9.4e-17 Score=161.40 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHH---HHHHHhCC-ccC
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSE---RVASERGE-KLG 86 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~---rva~e~~~-~~g 86 (901)
.+.|.+.++...-+-+++..+..|-|||..+.+..+..+- .-...+.++|...+|+||-|+.+ |+++.+.. ++.
T Consensus 66 sevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie--pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkva 143 (387)
T KOG0329|consen 66 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE--PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 143 (387)
T ss_pred hHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC--CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEE
Confidence 3456666666566778899999999999877777776552 22345677777799999999875 55554432 111
Q ss_pred cEe-eEEEecccc-cCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEE
Q 046397 87 ESV-GYKVRLEGM-KGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVL 162 (901)
Q Consensus 87 ~~v-Gy~vr~e~~-~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIl 162 (901)
... |..|.-+.. ...-++|+++|||.++...++.. .|+++.|.|+|||+..--..|.... +..+.+..| +-++..
T Consensus 144 VFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRD-vQEifr~tp~~KQvmm 222 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRD-VQEIFRMTPHEKQVMM 222 (387)
T ss_pred EEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHH-HHHHhhcCcccceeee
Confidence 111 233322221 12358999999999998877665 7999999999999952112222221 223333333 567889
Q ss_pred eccCCCHH
Q 046397 163 MSATLDAE 170 (901)
Q Consensus 163 mSATl~~~ 170 (901)
+|||++.+
T Consensus 223 fsatlske 230 (387)
T KOG0329|consen 223 FSATLSKE 230 (387)
T ss_pred eeeecchh
Confidence 99999766
No 109
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.69 E-value=1e-15 Score=177.63 Aligned_cols=159 Identities=24% Similarity=0.307 Sum_probs=115.0
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc-cC
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK-LG 86 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~-~g 86 (901)
+--..+|.+.+..+..+..++|++||.+|||.. +.+..|..++... ...++...|+++|+.|++..|...+..+ +-
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD--~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD--SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC--CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 334678999999999999999999999999954 4455566655332 2356666799999999998886665322 11
Q ss_pred cEe---e-----EEEecccccCCCceEEEEcHHHHHHHHhcCC----CCCCceEEEEecCcccCcchhHHHHHHHHHHhh
Q 046397 87 ESV---G-----YKVRLEGMKGRDTRLLFCTTGILLRRLLVDR----NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR 154 (901)
Q Consensus 87 ~~v---G-----y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~----~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~ 154 (901)
..+ | |++ ..-+++|+|+-|+.+-..|.+.| +...+.+||+||||.-|-..|-+ +...+..
T Consensus 587 rg~sl~g~ltqEYsi-----np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l---~~Eqll~ 658 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSI-----NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGL---LWEQLLL 658 (1330)
T ss_pred cchhhHhhhhHHhcC-----CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccch---HHHHHHH
Confidence 111 1 222 12368999999999998887754 78899999999999765544432 2332333
Q ss_pred CCCceEEEeccCC-CHHHHHhhhC
Q 046397 155 RPELRLVLMSATL-DAELFSSYFG 177 (901)
Q Consensus 155 ~~~~kiIlmSATl-~~~~f~~yf~ 177 (901)
.-.+.++++|||+ |++.|..|.+
T Consensus 659 li~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 659 LIPCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred hcCCCeeEEecccCCHHHHHHHHH
Confidence 3457799999999 8889998886
No 110
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.67 E-value=1.5e-15 Score=157.40 Aligned_cols=158 Identities=21% Similarity=0.184 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+.+|.++++.+.+++++++++|||+|||..+..++++.+.........+++++.|++.++.|+++.+...... .+..+
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceE
Confidence 68899999999999999999999999999999999998876652223456777779999999999888655332 12222
Q ss_pred eEEEec-----c-cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceEE
Q 046397 90 GYKVRL-----E-GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRLV 161 (901)
Q Consensus 90 Gy~vr~-----e-~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~kiI 161 (901)
+.-... + .....+.+|+|||++.|++.+.+.. .+.+++++|+||+|+-. +.. ....+..+... .++.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~-~~~~~~~~~~~l~~~~~~~ 178 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMG-FEDQIREILKLLPKDRQTL 178 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccC-hHHHHHHHHHhCCcccEEE
Confidence 211100 0 0112367899999999999887665 67889999999999632 222 22223333332 3478999
Q ss_pred EeccCCCHH
Q 046397 162 LMSATLDAE 170 (901)
Q Consensus 162 lmSATl~~~ 170 (901)
+||||++..
T Consensus 179 ~~SAT~~~~ 187 (203)
T cd00268 179 LFSATMPKE 187 (203)
T ss_pred EEeccCCHH
Confidence 999999743
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.9e-15 Score=180.45 Aligned_cols=125 Identities=21% Similarity=0.170 Sum_probs=85.4
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
|+.|-+..+--+++-.+.=++--|..+.||+|||.++.++++-..+ .|..+.|+ .|++.||.+.++.+.... ..
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL---~G~~V~Iv--Tpn~yLA~rd~e~~~~l~-~~ 148 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHVV--TVNDYLAKRDAEWMGPLY-EF 148 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHH---cCCCEEEE--ecCHHHHHHHHHHHHHHH-hh
Confidence 3444455555567777665566699999999999988888754443 23334433 499999999999886654 34
Q ss_pred cCcEeeEEEeccc----ccCCCceEEEEcHHHH-HHHHhcCC-------CCCCceEEEEecCc
Q 046397 85 LGESVGYKVRLEG----MKGRDTRLLFCTTGIL-LRRLLVDR-------NLKGVTHVIVDEVH 135 (901)
Q Consensus 85 ~g~~vGy~vr~e~----~~~~~t~Ii~~T~g~L-lr~L~~~~-------~l~~~~~IIIDE~H 135 (901)
+|-.||.-+...+ ...-.++|+|+|++.| ++.|...- .+..+.+.|||||+
T Consensus 149 LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaD 211 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVD 211 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechh
Confidence 5666665442211 1112479999999999 77765432 36788999999999
No 112
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.65 E-value=1.1e-15 Score=163.65 Aligned_cols=303 Identities=16% Similarity=0.177 Sum_probs=174.1
Q ss_pred EEEEecchHHHHHHHHHHHHHHhCCc----cCc--Eee-EEEeccc-ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEE
Q 046397 59 SIICTQPRRISAMSVSERVASERGEK----LGE--SVG-YKVRLEG-MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHV 129 (901)
Q Consensus 59 ~IlvtqPrr~la~qva~rva~e~~~~----~g~--~vG-y~vr~e~-~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~I 129 (901)
..+++.|.|++|.|..+.+.+..--. +.. .+| ...|-.. .....++|+++|||+++..+.... .+....++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 45666799999999999775543211 110 111 1111111 112468999999999999887655 68889999
Q ss_pred EEecCccc--CcchhHHHHHHHHHHhhC---CCceEEEeccCCCHHHHHhhhCCCcEEeeCCcc--ccceEEe-ccchhh
Q 046397 130 IVDEVHER--GMNEDFLLIVLKDLLSRR---PELRLVLMSATLDAELFSSYFGGATVINIPGFT--YPVRTHF-LEDILD 201 (901)
Q Consensus 130 IIDE~HeR--~~~~d~ll~~lk~ll~~~---~~~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~--~pV~~~~-l~d~~~ 201 (901)
++||++-. ...+|++..+...+-... ..++.++.|||+..- .+..+..+. ||.-... -+|.+.
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~f---------eVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIF---------EVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEE---------EeeehhhhhccCceeEecccccccc
Confidence 99999831 134555554444433322 347899999997431 011111111 2211110 011100
Q ss_pred hccc--ccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhc--ccccchhhhhhcccCCCCCCchhhHHHHH
Q 046397 202 MTGY--RLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAAN--FNEYSSQTRESLSCWNPDCIGFNLIEYVL 277 (901)
Q Consensus 202 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~~~~~~~i~~~li~~ll 277 (901)
.+-. .......++. .|. .+...+.... .+++-.....+...++. .+..-.=+.-+
T Consensus 439 etvHhvv~lv~p~~d~-----sw~---------------~lr~~i~td~vh~kdn~~pg~~Spe~~s~-a~kilkgEy~v 497 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDG-----SWC---------------DLRQFIETDKVHTKDNLLPGQVSPENPSS-ATKILKGEYGV 497 (725)
T ss_pred hhhccceeecCCccCc-----cHH---------------HHhhhhccCCcccccccccccCCCCChhh-hhHHhcCchhh
Confidence 0000 0000000110 010 0011110000 00000000000000000 00000000111
Q ss_pred HHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhccc
Q 046397 278 CYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSI 357 (901)
Q Consensus 278 ~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGI 357 (901)
..+ +.....+.||||.+..++..+.+++.+.+- ..+...++||+..+.||++.++.|+.+..+.+|||++|++|+
T Consensus 498 ~ai-~~h~mdkaiifcrtk~dcDnLer~~~qkgg----~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargl 572 (725)
T KOG0349|consen 498 VAI-RRHAMDKAIIFCRTKQDCDNLERMMNQKGG----KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGL 572 (725)
T ss_pred hhh-hhhccCceEEEEeccccchHHHHHHHHcCC----ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccc
Confidence 122 234567899999999999999999987642 457788999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcC
Q 046397 358 TINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLY 414 (901)
Q Consensus 358 dIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~ 414 (901)
||.++-|+|+.-++. .|.+|.||+||+||. +-|..+.|.
T Consensus 573 di~g~p~~invtlpd------------------~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 573 DITGLPFMINVTLPD------------------DKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred cccCCceEEEEecCc------------------ccchhhhhhhccchhhhcceeEEEe
Confidence 999999999965554 444788999999998 678887775
No 113
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.64 E-value=3.7e-16 Score=140.63 Aligned_cols=90 Identities=48% Similarity=0.766 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCccCCCccchhhhhhhcCCCChHHHHHHHHhhhc-CChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhh
Q 046397 468 NAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIF-NCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQ 546 (901)
Q Consensus 468 ~al~~L~~~gald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~-~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~ 546 (901)
+|++.|+.+||||++++||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|+++..++|..| +++......+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 9999999999999999998877 566677778888
Q ss_pred cCCC-CCcHHHHH
Q 046397 547 FSHD-YSDHLALV 558 (901)
Q Consensus 547 f~~~-~sDhl~~l 558 (901)
|.+. .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 9877 89999863
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.64 E-value=1.6e-14 Score=174.47 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEeccc-ccCCC
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEG-MKGRD 102 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~-~~~~~ 102 (901)
.+..+|..+||||||......+.. ++... ...+|+++.||+.|..|+.+.+........ ..++..-.+.. .....
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~-l~~~~--~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~ 338 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARK-ALELL--KNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDD 338 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHH-HHhhc--CCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCC
Confidence 357899999999999666554433 33222 234677777999999999998866542211 01110000101 11234
Q ss_pred ceEEEEcHHHHHHHHhcC---CCCCCc-eEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 103 TRLLFCTTGILLRRLLVD---RNLKGV-THVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~---~~l~~~-~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
..|+|+|.+.+.+.+... ...... .+||+|||| |+...+ +...++ ...|+...+++|||+
T Consensus 339 ~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~-~~~~l~---~~~p~a~~lGfTaTP 402 (667)
T TIGR00348 339 GGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGE-LAKNLK---KALKNASFFGFTGTP 402 (667)
T ss_pred CCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchH-HHHHHH---hhCCCCcEEEEeCCC
Confidence 689999999998644321 111111 389999999 544333 222222 356788999999998
No 115
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=7.4e-15 Score=174.74 Aligned_cols=107 Identities=24% Similarity=0.291 Sum_probs=89.9
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCC---C
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITI---N 360 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdI---p 360 (901)
..+.++||||.+++..+.+++.|.+.++. ...+|+.+...|+..+-+.+++|. |+||||+|++|+|| +
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~-------~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~ 508 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIP-------HAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGP 508 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCC-------eeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCc
Confidence 45789999999999999999999987654 338899999888888888888887 99999999999999 4
Q ss_pred CeE-----EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 361 DVV-----FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 361 ~V~-----~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
+|. +||.+.++. |+..+.||+|||||. .||.+..+++-+
T Consensus 509 ~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 509 GVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred chhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 899 999844432 455677999999999 589887777654
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.62 E-value=9.7e-15 Score=173.03 Aligned_cols=353 Identities=19% Similarity=0.244 Sum_probs=211.6
Q ss_pred CCcHHHHHHHHHHHHcC----CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 8 LPAYKEKNRLLTAISQN----QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~----~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
+.....|..+.+.|.+. +..++.|.||||||-.+.+.|.+.+ .+|+...|+| |-..+..|+.+|+...+|.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L---~~GkqvLvLV--PEI~Ltpq~~~rf~~rFg~ 271 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL---AQGKQVLVLV--PEIALTPQLLARFKARFGA 271 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH---HcCCEEEEEe--ccccchHHHHHHHHHHhCC
Confidence 56677888888888766 7899999999999999999887765 2445555555 9999999999999999997
Q ss_pred ccCcEee---EEEec---ccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhH-HH---HHHHHHHh
Q 046397 84 KLGESVG---YKVRL---EGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDF-LL---IVLKDLLS 153 (901)
Q Consensus 84 ~~g~~vG---y~vr~---e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~-ll---~~lk~ll~ 153 (901)
+++.... -+-+. ......+.+|+++|-..+.- .++++++|||||-|+-+...+- .. .-+..+..
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra 345 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA 345 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHHH
Confidence 7654221 11111 22234678999999877654 6889999999999975443321 11 11222233
Q ss_pred hCCCceEEEeccCCCHHHHHhhhCC-CcEEeeCCccc---cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 154 RRPELRLVLMSATLDAELFSSYFGG-ATVINIPGFTY---PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 154 ~~~~~kiIlmSATl~~~~f~~yf~~-~~~i~i~gr~~---pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
+..+..+|+-|||+..+.+..--.+ -..+.+..|.. +-+...++. .+..... .
T Consensus 346 ~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDm----r~e~~~~-------------------~ 402 (730)
T COG1198 346 KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDM----RKEPLET-------------------G 402 (730)
T ss_pred HHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEec----ccccccc-------------------C
Confidence 4457899999999998877665444 33444444433 223332221 1000000 0
Q ss_pred hhhhhhhHHHHHHHHHh-------hcccccchhhhhhcccCCCCCCchhh-------HHHHHHHHHhhcC---------C
Q 046397 230 RKRKSQIASAVEDTLKA-------ANFNEYSSQTRESLSCWNPDCIGFNL-------IEYVLCYICEKER---------P 286 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~l~~~~~~~i~~~l-------i~~ll~~i~~~~~---------~ 286 (901)
......+...+++.+.. .+..+|.+...+.-+.|-..+.+.+. -..+.||.|.... +
T Consensus 403 ~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 403 RSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred ccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCC
Confidence 00112223334444432 23345555444444444333332221 1334566665431 2
Q ss_pred CcEE-EEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHH--HHHhhcCCCCCCCeEEEEecchhhcccCCCCeE
Q 046397 287 GAVL-VFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASS--EQRLIFDEPESGVRKIVLATNIAETSITINDVV 363 (901)
Q Consensus 287 g~iL-VFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~--eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~ 363 (901)
+..| .|-+|.+.++ +.|... + ....|+.+.++.... .-+..+..|.+|+..|||.|.++..|.|+|+|+
T Consensus 483 s~~L~~~G~Gterie---eeL~~~--F---P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vt 554 (730)
T COG1198 483 SEHLRAVGPGTERIE---EELKRL--F---PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVT 554 (730)
T ss_pred CCeeEEecccHHHHH---HHHHHH--C---CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccce
Confidence 3334 4456655544 445443 1 123466677765543 345778899999999999999999999999999
Q ss_pred EEE--e--CCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEE
Q 046397 364 FVI--D--CGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYR 412 (901)
Q Consensus 364 ~VI--d--~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~ 412 (901)
.|. | +++-. ..|.+.... -.-+.|-+|||||. .+|..+.
T Consensus 555 LVgvl~aD~~L~~-~DfRA~Er~---------fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 555 LVGVLDADTGLGS-PDFRASERT---------FQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred EEEEEechhhhcC-CCcchHHHH---------HHHHHHHHhhhccCCCCCeEEE
Confidence 873 3 33221 112221111 22456999999998 7887653
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=1.8e-13 Score=163.28 Aligned_cols=125 Identities=19% Similarity=0.136 Sum_probs=86.9
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
|+.|-...|--+++-.+.=++--|..++||.|||+.+.++++..++. |.. +.|+.|++.||.+.++.+......
T Consensus 76 ~R~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---g~~--VhIvT~ndyLA~RD~e~m~~l~~~- 149 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---GKG--VHVITVNDYLARRDAENNRPLFEF- 149 (908)
T ss_pred HHHhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc---CCC--EEEEeCCHHHHHHHHHHHHHHHHh-
Confidence 34455555555677777767777999999999999998888766643 233 444449999999999888665532
Q ss_pred cCcEeeEEEec----ccccCCCceEEEEcHHHH-HHHHhcCC-------CCCCceEEEEecCc
Q 046397 85 LGESVGYKVRL----EGMKGRDTRLLFCTTGIL-LRRLLVDR-------NLKGVTHVIVDEVH 135 (901)
Q Consensus 85 ~g~~vGy~vr~----e~~~~~~t~Ii~~T~g~L-lr~L~~~~-------~l~~~~~IIIDE~H 135 (901)
+|-.||.-... +....-.++|+|+|++-| +..|...- ....+.+.|||||+
T Consensus 150 lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvD 212 (908)
T PRK13107 150 LGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVD 212 (908)
T ss_pred cCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchh
Confidence 56666643222 112223689999999998 66665431 23778899999999
No 118
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2.6e-13 Score=162.08 Aligned_cols=121 Identities=21% Similarity=0.186 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.++|.+++..+..++.+|..++||+|||+++.++++..++. +.. ++|+.|+|.||.|.++.+.... ..+|-.+
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---g~~--v~IVTpTrELA~Qdae~m~~L~-k~lGLsV 166 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---GKP--VHLVTVNDYLAQRDCEWVGSVL-RWLGLTT 166 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---cCC--eEEEeCCHHHHHHHHHHHHHHH-hhcCCeE
Confidence 788999999999999999999999999999999999987753 222 3334499999999998775543 3445555
Q ss_pred eEEEecccc----cCCCceEEEEcHHHH-HHHHhcCC-CC-------CCceEEEEecCcc
Q 046397 90 GYKVRLEGM----KGRDTRLLFCTTGIL-LRRLLVDR-NL-------KGVTHVIVDEVHE 136 (901)
Q Consensus 90 Gy~vr~e~~----~~~~t~Ii~~T~g~L-lr~L~~~~-~l-------~~~~~IIIDE~He 136 (901)
|.-+..... ..-.++|+|+|||.| +..+.... .+ ..+.++|||||+.
T Consensus 167 ~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 167 GVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 543322111 112479999999999 88877653 23 3568999999993
No 119
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.53 E-value=5e-13 Score=164.68 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=90.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCC---CCeEEEEecchhhcccCCCC
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPES---GVRKIVLATNIAETSITIND 361 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~---g~~kIIvaTniaetGIdIp~ 361 (901)
.+.++|||+.-......+.+.|...+ +....+||+++..+|..+++.|.. +..-+|+||.++..|||+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g-------~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRG-------YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcC-------CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 46799999998888888888887553 335688999999999999999954 34567899999999999999
Q ss_pred eEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcchhh
Q 046397 362 VVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCVYD 420 (901)
Q Consensus 362 V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~~~ 420 (901)
+++||. ||+..|..... |+.|||-|.+ +=.+|+|+++...+
T Consensus 559 Ad~VIi--------yD~dWNP~~d~----------QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 559 ADIVIL--------YDSDWNPQVDL----------QAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CCEEEE--------eCCCCChHHHH----------HHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 999998 88877766555 9999998885 34789999887654
No 120
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.49 E-value=2.6e-13 Score=150.35 Aligned_cols=275 Identities=21% Similarity=0.256 Sum_probs=167.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
.++++-+|||.||||.-++|-+.+ ...| +.|- |-|.||.++++|+ .+.|..+.-..|-..++....+..+
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~----aksG----vycG-PLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKS----AKSG----VYCG-PLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhh----hccc----eecc-hHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcc
Confidence 457788999999999887765543 2232 5554 9999999999999 4556666666676666654445567
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcc-----cCc-chhHHHHHHHHHHhhCCCceEEEeccCCCHHHHHhhhC
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHE-----RGM-NEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFG 177 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~He-----R~~-~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~ 177 (901)
..+-||.+|.- .-..|++.||||++. ||. .|..|+++..+-+. +.+=-|-++ ...+.
T Consensus 261 ~hvScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH------LCGepsvld--lV~~i-- 323 (700)
T KOG0953|consen 261 QHVSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH------LCGEPSVLD--LVRKI-- 323 (700)
T ss_pred cceEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh------ccCCchHHH--HHHHH--
Confidence 88889988763 234589999999993 432 23344444333222 211111111 00000
Q ss_pred CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhh
Q 046397 178 GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTR 257 (901)
Q Consensus 178 ~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 257 (901)
....|.. |++++.|.. .|. .+++
T Consensus 324 ----~k~TGd~--vev~~YeRl--------~pL----------------------------~v~~--------------- 346 (700)
T KOG0953|consen 324 ----LKMTGDD--VEVREYERL--------SPL----------------------------VVEE--------------- 346 (700)
T ss_pred ----HhhcCCe--eEEEeeccc--------Ccc----------------------------eehh---------------
Confidence 0011111 111111110 000 0000
Q ss_pred hhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcC
Q 046397 258 ESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFD 337 (901)
Q Consensus 258 ~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~ 337 (901)
.+..-..+-.+|+++|=+ ++.+|-.+...++..+.. .+..++|+||++.|..--.
T Consensus 347 ------------------~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~~------k~aVIYGsLPPeTr~aQA~ 401 (700)
T KOG0953|consen 347 ------------------TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGNH------KCAVIYGSLPPETRLAQAA 401 (700)
T ss_pred ------------------hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcCc------ceEEEecCCCCchhHHHHH
Confidence 001111234567777633 678899999999887432 3557899999886543333
Q ss_pred CC--CCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC----CCceE
Q 046397 338 EP--ESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ----PGECY 411 (901)
Q Consensus 338 ~f--~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~----~G~c~ 411 (901)
.| +++..+|+|||+..++|+|+ +|+-||-+.+.| |+ .-.+..++.++++|-+|||||.+ .|..-
T Consensus 402 ~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vT 471 (700)
T KOG0953|consen 402 LFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVT 471 (700)
T ss_pred HhCCCCCccceEEeeccccccccc-ceeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEE
Confidence 33 35889999999999999999 577777555554 43 23355688899999999999985 46666
Q ss_pred EcCCcc
Q 046397 412 RLYPRC 417 (901)
Q Consensus 412 ~L~s~~ 417 (901)
.|+.++
T Consensus 472 tl~~eD 477 (700)
T KOG0953|consen 472 TLHSED 477 (700)
T ss_pred EeeHhh
Confidence 666554
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.47 E-value=1.1e-12 Score=133.94 Aligned_cols=157 Identities=25% Similarity=0.196 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 7 NLPAYKEKNRLLTAISQN-QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~-~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
..+..++|.++++.+.+. ++++|.|+||+|||+.+..++++..... ....++++.|++.++.++..++........
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 456788999999999988 9999999999999999999988876432 134577777999999999999977664322
Q ss_pred CcEeeEEEecc------cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCC
Q 046397 86 GESVGYKVRLE------GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPE 157 (901)
Q Consensus 86 g~~vGy~vr~e------~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~ 157 (901)
.....+-.... .......+++++|++.+.+.+.... ....+++|||||+|..... . ....+..++.. .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~-~~~~~~~~~~~~~~~ 160 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-G-FGDQLEKLLKLLPKN 160 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-C-cHHHHHHHHHhCCcc
Confidence 11111110000 0112223999999999999887765 6677899999999974421 1 11222233332 467
Q ss_pred ceEEEeccCCC
Q 046397 158 LRLVLMSATLD 168 (901)
Q Consensus 158 ~kiIlmSATl~ 168 (901)
.++++||||+.
T Consensus 161 ~~~v~~saT~~ 171 (201)
T smart00487 161 VQLLLLSATPP 171 (201)
T ss_pred ceEEEEecCCc
Confidence 89999999993
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.46 E-value=3.1e-12 Score=150.91 Aligned_cols=273 Identities=22% Similarity=0.256 Sum_probs=174.6
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC--cc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE--KL 85 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~--~~ 85 (901)
.+.|..|.--...+..|+..-|.||||.||||-...+.+-. ..+|+.+.|++ ||+.|+.|+++++.+.... .+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~---a~kgkr~yii~--PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL---AKKGKRVYIIV--PTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH---HhcCCeEEEEe--cCHHHHHHHHHHHHHHHhhcCCc
Confidence 37899999999999999999999999999998776655433 34566677777 9999999999999655321 12
Q ss_pred CcEeeEEEec---------ccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcc---cCcchhHHHHHH-----
Q 046397 86 GESVGYKVRL---------EGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHE---RGMNEDFLLIVL----- 148 (901)
Q Consensus 86 g~~vGy~vr~---------e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~He---R~~~~d~ll~~l----- 148 (901)
...+.|+-.+ +...+.+.+|+++|.+.|......-.. -++++|+||+++- .+-+.|-++.++
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE 234 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEE 234 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHH
Confidence 2223344332 222345789999999988876643322 3689999999992 233444333222
Q ss_pred -----------HHHHh----------------------hCCCceEEEeccCCCHH-----HHHhhhCCCcEEeeCCcccc
Q 046397 149 -----------KDLLS----------------------RRPELRLVLMSATLDAE-----LFSSYFGGATVINIPGFTYP 190 (901)
Q Consensus 149 -----------k~ll~----------------------~~~~~kiIlmSATl~~~-----~f~~yf~~~~~i~i~gr~~p 190 (901)
+.-+. +.+.-.+|.+|||..+. .|.+.++= .+.+
T Consensus 235 ~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----evG~---- 306 (1187)
T COG1110 235 VIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EVGS---- 306 (1187)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----ccCc----
Confidence 11111 11334689999997432 34443330 0000
Q ss_pred ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCch
Q 046397 191 VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGF 270 (901)
Q Consensus 191 V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~ 270 (901)
...++.++. |.|. ..
T Consensus 307 -~~~~LRNIv-------------D~y~---------------------------------------------------~~ 321 (1187)
T COG1110 307 -GGEGLRNIV-------------DIYV---------------------------------------------------ES 321 (1187)
T ss_pred -cchhhhhee-------------eeec---------------------------------------------------cC
Confidence 000010000 0000 00
Q ss_pred hhHHHHHHHHHhhcCCCcEEEEcCC---HHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEE
Q 046397 271 NLIEYVLCYICEKERPGAVLVFMTG---WDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIV 347 (901)
Q Consensus 271 ~li~~ll~~i~~~~~~g~iLVFl~~---~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kII 347 (901)
.-++.++ .+.+.. +...|||+|. ++.++.+++.|..+++. +-..|+. ..+.++.|..|+..|+
T Consensus 322 ~~~e~~~-elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~-------a~~~~a~-----~~~~le~F~~GeidvL 387 (1187)
T COG1110 322 ESLEKVV-ELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN-------AELIHAE-----KEEALEDFEEGEVDVL 387 (1187)
T ss_pred ccHHHHH-HHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce-------EEEeecc-----chhhhhhhccCceeEE
Confidence 1111111 122222 2357999998 99999999999988654 3356663 3678899999999999
Q ss_pred Eec----chhhcccCCCC-eEEEEeCCCccc
Q 046397 348 LAT----NIAETSITIND-VVFVIDCGKAKE 373 (901)
Q Consensus 348 vaT----niaetGIdIp~-V~~VId~G~~k~ 373 (901)
|.. +++-+|||+|. ++|+|-.|.||.
T Consensus 388 VGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 388 VGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred EEecccccceeecCCchhheeEEEEecCCce
Confidence 875 58999999995 789999999964
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.45 E-value=8.4e-12 Score=155.63 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=83.6
Q ss_pred HHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcc
Q 046397 277 LCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETS 356 (901)
Q Consensus 277 l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetG 356 (901)
+..+... .+|++|||+++.+..+.+++.|....... .+.++. .+.. .+|.++++.|+.++..|+++|+.+.+|
T Consensus 666 i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~---~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EG 738 (850)
T TIGR01407 666 IIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFE---GYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEG 738 (850)
T ss_pred HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcccc---CceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecc
Confidence 3444333 46899999999999999999997532211 122222 2222 467788899999999999999999999
Q ss_pred cCCCCeE--EEEeCCCccccccccCCCc--------------ccccc--ccccHhcHHHHhhhcCCCC--CCceEEc
Q 046397 357 ITINDVV--FVIDCGKAKETSYDALNNT--------------SCLLP--SWISTVSAQQRRGRAGRVQ--PGECYRL 413 (901)
Q Consensus 357 IdIp~V~--~VId~G~~k~~~yd~~~~~--------------~~l~~--~~iSka~~~QR~GRAGR~~--~G~c~~L 413 (901)
||+|+.. .||-.|+| |.++.+. ..+.. .|-.-....|-.||.=|.. .|..+.|
T Consensus 739 VD~~g~~l~~viI~~LP----f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 739 VDFPGNGLVCLVIPRLP----FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred cccCCCceEEEEEeCCC----CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 9999766 56778888 3333210 11111 1122345789999999985 4655554
No 124
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.43 E-value=1.9e-12 Score=124.25 Aligned_cols=137 Identities=32% Similarity=0.339 Sum_probs=95.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEeccccc-----
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMK----- 99 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~----- 99 (901)
++++|.||||+|||+++..++.+.... +...+++++.|++.++.+..+++...... +..+.+-.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 368999999999999999988876543 22346777779999999999988776653 33344333332222
Q ss_pred -CCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 100 -GRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 100 -~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
.....|+++|++.+.+.+.... ....+++|||||+|.-.... .............+..+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG-FGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhhCCccceEEEEeccC
Confidence 3578999999999988776554 45678999999999522211 1111122334455678899999995
No 125
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.40 E-value=3.9e-11 Score=144.61 Aligned_cols=97 Identities=23% Similarity=0.118 Sum_probs=67.4
Q ss_pred EEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCC--------------------------CCCCC
Q 046397 290 LVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDE--------------------------PESGV 343 (901)
Q Consensus 290 LVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~--------------------------f~~g~ 343 (901)
||=+.+++.+..+++.|.......+ ..+.+..+||..+...|..+.+. ...+.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~-~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEK-YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccC-CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 5667888888888888876643322 45678889999876666554322 12357
Q ss_pred eEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCC
Q 046397 344 RKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPG 408 (901)
Q Consensus 344 ~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G 408 (901)
..|||||.+.|.|+|++ .+++|- .+.+-.+..||+||..|.+..
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhcccccccC
Confidence 79999999999999996 344431 122334566999999998644
No 126
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.35 E-value=7.5e-12 Score=118.78 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=88.4
Q ss_pred HcCCeEEEEcCCCChHHHH-HHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecc-ccc
Q 046397 22 SQNQVVIISGETGCGKTTQ-VPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLE-GMK 99 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq-~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e-~~~ 99 (901)
.+++..+|-..+|+|||+. +|.++.+. +.. ..+++++.|+|.+|.++++.+. +..+.+....- ...
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~----~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~ 69 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREA-IKR----RLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTH 69 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHH-HHT----T--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS---
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHH-HHc----cCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccc
Confidence 3567889999999999996 55555544 332 3478888899999999888772 22244443222 122
Q ss_pred CCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCH
Q 046397 100 GRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDA 169 (901)
Q Consensus 100 ~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~ 169 (901)
....-|.++|.+.+.+.+.+...+.+|++||+||||--+..+-...+.++.... ....++|+||||++.
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATPPG 138 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-TT
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCCCC
Confidence 355778999999999988875588999999999999655555455555665533 345789999999854
No 127
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.33 E-value=5.7e-12 Score=127.74 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=95.3
Q ss_pred CCcHHHHHHHHHHHHc-------CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 8 LPAYKEKNRLLTAISQ-------NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 8 LPi~~~q~~il~~i~~-------~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
+.++++|.+++..+.+ +..+++.+|||||||..+..++.+... +++++.|+..++.|..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 4578899999999874 689999999999999888776665431 5666669999999999888433
Q ss_pred hCCccCcE--------ee--------EEEecccccCCCceEEEEcHHHHHHHHhcCC------------CCCCceEEEEe
Q 046397 81 RGEKLGES--------VG--------YKVRLEGMKGRDTRLLFCTTGILLRRLLVDR------------NLKGVTHVIVD 132 (901)
Q Consensus 81 ~~~~~g~~--------vG--------y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~------------~l~~~~~IIID 132 (901)
........ .+ ..............+.+.|...+........ ....+++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 32211100 00 0001111123467899999999987764311 34567899999
Q ss_pred cCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCC
Q 046397 133 EVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLD 168 (901)
Q Consensus 133 E~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~ 168 (901)
|||+ ...+.. .+.++. .+...+|+||||+.
T Consensus 154 EaH~--~~~~~~---~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHH--YPSDSS---YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp TGGC--THHHHH---HHHHHH-SSCCEEEEEESS-S
T ss_pred hhhh--cCCHHH---HHHHHc-CCCCeEEEEEeCcc
Confidence 9997 333321 233333 67788999999974
No 128
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.33 E-value=3.7e-12 Score=121.67 Aligned_cols=104 Identities=28% Similarity=0.422 Sum_probs=89.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEE
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVF 364 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~ 364 (901)
..+++|||+++...++.+++.|.+. ...+..+||+++..++..+++.|.++..+|+++|+++++|+|+|+++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 5789999999999999999999862 244779999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC-CCceEEc
Q 046397 365 VIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-PGECYRL 413 (901)
Q Consensus 365 VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L 413 (901)
||. ++++ .+...+.|++||+||.+ .|.|+.+
T Consensus 100 vi~--------~~~~----------~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 100 VIN--------YDLP----------WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEE--------eCCC----------CCHHHheecccccccCCCCceEEeC
Confidence 997 4443 34556669999999996 7777653
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=5.7e-11 Score=130.13 Aligned_cols=323 Identities=17% Similarity=0.158 Sum_probs=180.8
Q ss_pred cHHHHHHHHHHHHcC---CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 10 AYKEKNRLLTAISQN---QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 10 i~~~q~~il~~i~~~---~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
+.+||+.-+..+-.| +.-||+.|-|+|||..-.-.+- .-.+.|.++| ..-.++.|+...+.......-.
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~------tikK~clvLc--ts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC------TIKKSCLVLC--TSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee------eecccEEEEe--cCccCHHHHHHHHHhhcccCcc
Confidence 678999999998755 4678999999999954322211 1235677888 5677888988888665444433
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC---------CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCC
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR---------NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPE 157 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~---------~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~ 157 (901)
..+-+.-.-......++.|++.|..|+-.--.+.. .-..++++|+||+|- +..-.+..++..+...
T Consensus 375 ~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv--vPA~MFRRVlsiv~aH--- 449 (776)
T KOG1123|consen 375 QICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV--VPAKMFRRVLSIVQAH--- 449 (776)
T ss_pred ceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc--chHHHHHHHHHHHHHH---
Confidence 33333322222234567899999887753111100 134679999999995 4444443333333222
Q ss_pred ceEEEeccCCCHH--HHH--hhhCCCcEEeeC-----CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhccc
Q 046397 158 LRLVLMSATLDAE--LFS--SYFGGATVINIP-----GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA 228 (901)
Q Consensus 158 ~kiIlmSATl~~~--~f~--~yf~~~~~i~i~-----gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (901)
+ -++++||+-.+ .+. +|+-|+.+.... ...|--...-.|-.+.++
T Consensus 450 c-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt------------------------- 503 (776)
T KOG1123|consen 450 C-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMT------------------------- 503 (776)
T ss_pred h-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCC-------------------------
Confidence 2 26899998322 221 122121111100 000000000000000000
Q ss_pred chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHh
Q 046397 229 PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA 308 (901)
Q Consensus 229 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~ 308 (901)
.+...+.+... ......+..++|.. +.... .+...++. .+.+||||....-.....+-.|.+
T Consensus 504 --------~eFy~eYL~~~------t~kr~lLyvMNP~K--FraCq-fLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K 565 (776)
T KOG1123|consen 504 --------PEFYREYLREN------TRKRMLLYVMNPNK--FRACQ-FLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK 565 (776)
T ss_pred --------HHHHHHHHhhh------hhhhheeeecCcch--hHHHH-HHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC
Confidence 00111111100 00111122233332 22222 23333443 578999999887665555544433
Q ss_pred CccCCCCCceEEEEecCCCCHHHHHhhcCCCCC-CCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccc
Q 046397 309 NRILGDPTRVLLLTCHGSMASSEQRLIFDEPES-GVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLP 387 (901)
Q Consensus 309 ~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~-g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~ 387 (901)
- .++|..++.||.+|++.|.- ..++-|+-..++.||||+|..++.|. ....
T Consensus 566 p------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ--------ISSH-------- 617 (776)
T KOG1123|consen 566 P------------FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSH-------- 617 (776)
T ss_pred c------------eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEE--------Eccc--------
Confidence 2 67899999999999999975 45788888999999999999999996 1111
Q ss_pred ccccHhcHHHHhhhcCCCCC-------CceEEcCCcch
Q 046397 388 SWISTVSAQQRRGRAGRVQP-------GECYRLYPRCV 418 (901)
Q Consensus 388 ~~iSka~~~QR~GRAGR~~~-------G~c~~L~s~~~ 418 (901)
.=|+-+-.||.||.-|... ...|.|.+++.
T Consensus 618 -~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 618 -GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred -ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 1366677799999988742 24566666543
No 130
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=4.2e-11 Score=132.48 Aligned_cols=314 Identities=14% Similarity=0.059 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH------HHHhCC
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV------ASERGE 83 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv------a~e~~~ 83 (901)
-+.+|.+++..+.++..+++.-.|.+||+|..-....+.... ......+...|+.+++....+-+ ..++..
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL---CHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc---CcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 467889999999999999999999999997654443333221 11223444457777665422111 001100
Q ss_pred ccCcEeeEEEecccc--------cCCCceEEEEcHHHHHHHHhcCC-----CCCCceEEEEecCccc-CcchhHHHHHHH
Q 046397 84 KLGESVGYKVRLEGM--------KGRDTRLLFCTTGILLRRLLVDR-----NLKGVTHVIVDEVHER-GMNEDFLLIVLK 149 (901)
Q Consensus 84 ~~g~~vGy~vr~e~~--------~~~~t~Ii~~T~g~Llr~L~~~~-----~l~~~~~IIIDE~HeR-~~~~d~ll~~lk 149 (901)
.|--..+.. ...+.+++|..+.+.......+. .+-...++++||+|-. +.........++
T Consensus 364 ------A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R 437 (1034)
T KOG4150|consen 364 ------AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLR 437 (1034)
T ss_pred ------ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHH
Confidence 011111111 11356889999987776554332 3444568899999932 222222223344
Q ss_pred HHHh------hCCCceEEEeccCC--CHHHHHhhhC--CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhH
Q 046397 150 DLLS------RRPELRLVLMSATL--DAELFSSYFG--GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQE 219 (901)
Q Consensus 150 ~ll~------~~~~~kiIlmSATl--~~~~f~~yf~--~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 219 (901)
.++. ...+++++-.|||+ .....++.|+ ....++++|..-.-+.+.+=.+ ...|.
T Consensus 438 ~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP------~~~P~--------- 502 (1034)
T KOG4150|consen 438 ALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNP------SAPPT--------- 502 (1034)
T ss_pred HHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCC------CCCCc---------
Confidence 4433 23578999999998 3345667776 3556777776433222211000 00000
Q ss_pred HHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHH
Q 046397 220 KMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDI 299 (901)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i 299 (901)
...++.+. .++ ..+++..+.. .+-++|.||+.+.-+
T Consensus 503 --------~~~~~~~~---i~E-------------------------------~s~~~~~~i~--~~~R~IAFC~~R~~C 538 (1034)
T KOG4150|consen 503 --------SKSEKSSK---VVE-------------------------------VSHLFAEMVQ--HGLRCIAFCPSRKLC 538 (1034)
T ss_pred --------chhhhhhH---HHH-------------------------------HHHHHHHHHH--cCCcEEEeccHHHHH
Confidence 00000110 011 0111222221 245899999999888
Q ss_pred HHHHHHHHhCccCCCC-CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccccccc
Q 046397 300 NSLNDKLQANRILGDP-TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDA 378 (901)
Q Consensus 300 ~~l~~~L~~~~~~~~~-~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~ 378 (901)
+.+.....+.-....+ .--.|..+.|+-..++|++|....--|+.+-|||||.+|-||||...+.|+.+|+|-
T Consensus 539 EL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~------ 612 (1034)
T KOG4150|consen 539 ELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG------ 612 (1034)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch------
Confidence 8765554432110000 011245678999999999999988899999999999999999999999999999883
Q ss_pred CCCccccccccccHhcHHHHhhhcCCC-CCCc
Q 046397 379 LNNTSCLLPSWISTVSAQQRRGRAGRV-QPGE 409 (901)
Q Consensus 379 ~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~ 409 (901)
|-++++|..|||||. .+..
T Consensus 613 ------------S~aNl~QQ~GRAGRRNk~SL 632 (1034)
T KOG4150|consen 613 ------------SIANLWQQAGRAGRRNKPSL 632 (1034)
T ss_pred ------------hHHHHHHHhccccccCCCce
Confidence 788999999999998 4443
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=3.5e-10 Score=132.55 Aligned_cols=125 Identities=19% Similarity=0.131 Sum_probs=80.5
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
++.|-+..+--+++-.+.-.+--|....||+|||+.+.++++-.++ .|..+. ++.|+-.||.+-++.+...+. .
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL---~G~~Vh--vvT~NdyLA~RDae~m~~ly~-~ 145 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYAL---QGRRVH--VITVNDYLARRDAEWMGPLYE-A 145 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHH---cCCCeE--EEcCCHHHHHHHHHHHHHHHH-h
Confidence 3344444555556666654455578999999999888877765554 233333 334999999999988876653 4
Q ss_pred cCcEeeEEEeccc----ccCCCceEEEEcHHH-----HHHHHhcCC---CCCCceEEEEecCc
Q 046397 85 LGESVGYKVRLEG----MKGRDTRLLFCTTGI-----LLRRLLVDR---NLKGVTHVIVDEVH 135 (901)
Q Consensus 85 ~g~~vGy~vr~e~----~~~~~t~Ii~~T~g~-----Llr~L~~~~---~l~~~~~IIIDE~H 135 (901)
+|-.||+-..... ...-.++|+|+|..- |...+..++ ....+.+.|||||+
T Consensus 146 LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvD 208 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEAD 208 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchh
Confidence 6677775432211 111358999999863 333333222 45678899999999
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.23 E-value=2.9e-09 Score=131.40 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecC-CCCHHHHHhhcCCCCCCCeEEEEecch
Q 046397 274 EYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHG-SMASSEQRLIFDEPESGVRKIVLATNI 352 (901)
Q Consensus 274 ~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs-~l~~~eq~~i~~~f~~g~~kIIvaTni 352 (901)
...+..+. ..+|++||++++.+..+.+++.|.... ..+ ...| +.+ +.++.+.|+.+...|+++|..
T Consensus 637 ~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~-------~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~s 703 (820)
T PRK07246 637 AKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQ-------VSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLGS 703 (820)
T ss_pred HHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcC-------CcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecch
Confidence 33344444 357999999999999999999986431 112 2223 233 344677788888899999999
Q ss_pred hhcccCCC--CeEEEEeCCCccccccccC----------CCccccccc--cccHhcHHHHhhhcCCCC--CCceEEc
Q 046397 353 AETSITIN--DVVFVIDCGKAKETSYDAL----------NNTSCLLPS--WISTVSAQQRRGRAGRVQ--PGECYRL 413 (901)
Q Consensus 353 aetGIdIp--~V~~VId~G~~k~~~yd~~----------~~~~~l~~~--~iSka~~~QR~GRAGR~~--~G~c~~L 413 (901)
.-+|||+| +...||-.++|-..--||. .+-..+... |----.++|-+||.=|.. .|..+.|
T Consensus 704 FwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 704 FWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred hhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999997 4566666788733221211 011111111 222346889999999985 5765555
No 133
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.20 E-value=7.8e-12 Score=108.62 Aligned_cols=71 Identities=34% Similarity=0.469 Sum_probs=63.1
Q ss_pred eEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHH
Q 046397 318 VLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQ 397 (901)
Q Consensus 318 ~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 397 (901)
+.+..+||+++..+|..+++.|.++..+|||||+++++|||+|++++||. |+++. |...+.|
T Consensus 8 ~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~----------~~~~~~Q 69 (78)
T PF00271_consen 8 IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPW----------SPEEYIQ 69 (78)
T ss_dssp SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSES----------SHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCC----------CHHHHHH
Confidence 44779999999999999999999999999999999999999999999999 55433 5567779
Q ss_pred HhhhcCCCC
Q 046397 398 RRGRAGRVQ 406 (901)
Q Consensus 398 R~GRAGR~~ 406 (901)
++||+||.+
T Consensus 70 ~~GR~~R~g 78 (78)
T PF00271_consen 70 RIGRAGRIG 78 (78)
T ss_dssp HHTTSSTTT
T ss_pred HhhcCCCCC
Confidence 999999964
No 134
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.19 E-value=3.4e-11 Score=144.33 Aligned_cols=125 Identities=22% Similarity=0.199 Sum_probs=101.0
Q ss_pred HHHHHHHHHhh-cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecc
Q 046397 273 IEYVLCYICEK-ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATN 351 (901)
Q Consensus 273 i~~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTn 351 (901)
+..++..+... ..+.++|||+++...++.+++.|...++ .+..+||+++..+|.++++.|+.|...|+|||+
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi-------~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGI-------KVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhcc-------ceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 34455555443 3467899999999999999999987653 356899999999999999999999999999999
Q ss_pred hhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcc
Q 046397 352 IAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRC 417 (901)
Q Consensus 352 iaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~ 417 (901)
++++|+|+|++.+||. +|.... ..+-|..+|.||+|||||..+|.|+.+++..
T Consensus 501 ~L~rGfDiP~v~lVvi--------~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 501 LLREGLDLPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hhcCCeeeCCCcEEEE--------eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 9999999999999987 442110 1123556788999999999999998887753
No 135
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.15 E-value=9.1e-11 Score=141.65 Aligned_cols=123 Identities=20% Similarity=0.175 Sum_probs=100.1
Q ss_pred HHHHHHHHhh-cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecch
Q 046397 274 EYVLCYICEK-ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNI 352 (901)
Q Consensus 274 ~~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTni 352 (901)
..++..+... ..+.++|||+++...++.+++.|...+ +.+..+||+++..+|..+++.|++|...|+|||++
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g-------i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG-------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc-------eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 3444444432 346789999999999999999998764 34678999999999999999999999999999999
Q ss_pred hhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCc
Q 046397 353 AETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPR 416 (901)
Q Consensus 353 aetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~ 416 (901)
+++|+|+|++++||.+.... |.. |-|..+|.||+||+||...|.|+.+++.
T Consensus 506 L~rGfdlp~v~lVii~d~ei---fG~----------~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADK---EGF----------LRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcc---ccc----------CCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999999999999833321 111 2356678899999999999999988874
No 136
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.09 E-value=3.7e-09 Score=126.89 Aligned_cols=321 Identities=17% Similarity=0.203 Sum_probs=193.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE---EEecccc
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY---KVRLEGM 98 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy---~vr~e~~ 98 (901)
+.|++++|.+|+|||||..+-..++. .....+++.+.|..+.+..++..+...++.-.|..+-- ....+.+
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk 1230 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK 1230 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchH
Confidence 45789999999999999877777664 34567899999999988888877766555443332211 0111222
Q ss_pred cCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccC-cchh---HHHHHHHHHHh-hCCCceEEEeccCC-CHHHH
Q 046397 99 KGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERG-MNED---FLLIVLKDLLS-RRPELRLVLMSATL-DAELF 172 (901)
Q Consensus 99 ~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~-~~~d---~ll~~lk~ll~-~~~~~kiIlmSATl-~~~~f 172 (901)
.-...+|+++||+..-.. + ....+++.|.||.|.-| .... .+.. ++.+.. .-+++|++.+|..+ ++..+
T Consensus 1231 l~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~ 1305 (1674)
T KOG0951|consen 1231 LLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL 1305 (1674)
T ss_pred HhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh
Confidence 234679999999977543 2 66788999999999643 1111 1112 222222 23578999999987 66666
Q ss_pred HhhhCCCcEEeeC--CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhccc
Q 046397 173 SSYFGGATVINIP--GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFN 250 (901)
Q Consensus 173 ~~yf~~~~~i~i~--gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 250 (901)
-++..+.++..+ .|..|.+++.- ++... .+ . +......+...
T Consensus 1306 -ig~s~~~v~Nf~p~~R~~Pl~i~i~-------~~~~~------~~-~---------------~~~~am~~~~~------ 1349 (1674)
T KOG0951|consen 1306 -IGASSSGVFNFSPSVRPVPLEIHIQ-------SVDIS------HF-E---------------SRMLAMTKPTY------ 1349 (1674)
T ss_pred -ccccccceeecCcccCCCceeEEEE-------Eeccc------hh-H---------------HHHHHhhhhHH------
Confidence 445555555554 34445444321 00000 00 0 00001111110
Q ss_pred ccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc-----------------CC
Q 046397 251 EYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI-----------------LG 313 (901)
Q Consensus 251 ~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~-----------------~~ 313 (901)
.++..|. ..+.+.+||+|+++++..++..+..... +.
T Consensus 1350 -----------------------~ai~~~a---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~ 1403 (1674)
T KOG0951|consen 1350 -----------------------TAIVRHA---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLR 1403 (1674)
T ss_pred -----------------------HHHHHHh---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhh
Confidence 0112222 3567899999999999887766543211 11
Q ss_pred CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHh
Q 046397 314 DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTV 393 (901)
Q Consensus 314 ~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 393 (901)
.+.+..|. |-+|+..++.-+-.-|..|.+.|.|...- -.|+-...--+|| .| ...||...+.. . ..+-+
T Consensus 1404 e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-mg---t~~ydg~e~~~--~--~y~i~ 1472 (1674)
T KOG0951|consen 1404 ESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-MG---TQYYDGKEHSY--E--DYPIA 1472 (1674)
T ss_pred hccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-ec---ceeeccccccc--c--cCchh
Confidence 12233444 88999999999999999999998887655 7777665433333 23 33466654322 2 23557
Q ss_pred cHHHHhhhcCCCCCCceEEcCCcc---hhhhcccCCCC
Q 046397 394 SAQQRRGRAGRVQPGECYRLYPRC---VYDAFAEYQLP 428 (901)
Q Consensus 394 ~~~QR~GRAGR~~~G~c~~L~s~~---~~~~l~~~~~P 428 (901)
...|+.|+|.| .|.|..+.... .|..+.....|
T Consensus 1473 ~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1473 ELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred HHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 88999999988 78888886533 34455554444
No 137
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.08 E-value=9.7e-09 Score=118.34 Aligned_cols=372 Identities=20% Similarity=0.142 Sum_probs=192.6
Q ss_pred cHHHHHHHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC-c
Q 046397 10 AYKEKNRLLTAI----SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE-K 84 (901)
Q Consensus 10 i~~~q~~il~~i----~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~-~ 84 (901)
+..||-+=++.+ .++-+.|+.-+-|-|||.|..-++.......+..++-.|+| |.-.|.. +.+.++..... .
T Consensus 168 lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~--P~StL~N-W~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 168 LRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIA--PKSTLDN-WMNEFKRFTPSLN 244 (971)
T ss_pred cchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEe--eHhhHHH-HHHHHHHhCCCcc
Confidence 345666655554 46668899999999999988776654333223223334444 9866543 33444333211 1
Q ss_pred cCcEeeEEE-----ecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 85 LGESVGYKV-----RLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 85 ~g~~vGy~v-----r~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
+-..+|-+- +-+-......+|+++|.++.++.-.- -.--++.++||||+|. --+.... |..+++...-..
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~-lk~~~W~ylvIDEaHR-iKN~~s~---L~~~lr~f~~~n 319 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF-LKKFNWRYLVIDEAHR-IKNEKSK---LSKILREFKTDN 319 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH-HhcCCceEEEechhhh-hcchhhH---HHHHHHHhcccc
Confidence 111222110 01112234689999999999875110 0123468999999994 3333322 224444444455
Q ss_pred EEEeccCC---------------------CHHHHHhhhCCCcEEeeCCc------cccceEEec-cchhhhcccccCCCC
Q 046397 160 LVLMSATL---------------------DAELFSSYFGGATVINIPGF------TYPVRTHFL-EDILDMTGYRLTPYN 211 (901)
Q Consensus 160 iIlmSATl---------------------~~~~f~~yf~~~~~i~i~gr------~~pV~~~~l-~d~~~~~~~~~~~~~ 211 (901)
-+++|.|+ +.+.|.+||... ...|. .++|-.-|+ ..+-......+.|..
T Consensus 320 rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~---~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKk 396 (971)
T KOG0385|consen 320 RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFT---NCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKK 396 (971)
T ss_pred eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccc---ccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcc
Confidence 67889994 235677777632 11111 111111111 000000000111111
Q ss_pred CCcchh-----hHHHhHhh--cccc------hhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCch--------
Q 046397 212 QIDDYG-----QEKMWKMS--KQAP------RKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGF-------- 270 (901)
Q Consensus 212 ~~~~~~-----~~~~~~~~--~~~~------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~-------- 270 (901)
.+.-|. +.+.++.- +... ...+..+...+ -.+++..-..|--.. .....|...+-
T Consensus 397 E~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~-mQLRKccnHPYLF~g---~ePg~pyttdehLv~nSGK 472 (971)
T KOG0385|consen 397 ELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIM-MQLRKCCNHPYLFDG---AEPGPPYTTDEHLVTNSGK 472 (971)
T ss_pred eeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHH-HHHHHhcCCccccCC---CCCCCCCCcchHHHhcCcc
Confidence 111000 11111100 0000 00001111111 111111111110000 00001111221
Q ss_pred -hhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC---CeEE
Q 046397 271 -NLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESG---VRKI 346 (901)
Q Consensus 271 -~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g---~~kI 346 (901)
-++..++..+. ..+.+||||-.-.. +-+.|.....+ ..+...-+.|+++.++|...++.|... +.-.
T Consensus 473 m~vLDkLL~~Lk--~~GhRVLIFSQmt~----mLDILeDyc~~---R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiF 543 (971)
T KOG0385|consen 473 MLVLDKLLPKLK--EQGHRVLIFSQMTR----MLDILEDYCML---RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIF 543 (971)
T ss_pred eehHHHHHHHHH--hCCCeEEEeHHHHH----HHHHHHHHHHh---cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEE
Confidence 23344444443 35679999965443 33444433222 235577899999999999998888543 4457
Q ss_pred EEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 347 VLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 347 IvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
+++|-..+-|||+-..+.||- ||...|...=+ +|.+|+-|.|...|=++|||.+...-+
T Consensus 544 lLSTRAGGLGINL~aADtVIl--------yDSDWNPQ~DL-------QAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 544 LLSTRAGGLGINLTAADTVIL--------YDSDWNPQVDL-------QAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred EEeccccccccccccccEEEE--------ecCCCCchhhh-------HHHHHHHhhCCcCceEEEEEeccchHH
Confidence 899999999999999999997 77777665443 788999999999999999999987554
No 138
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=4.3e-09 Score=126.41 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=84.6
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
|+.|-...|--+++-.+.=++--|....||+|||+.+.++++-.++ .|..+.|+ .|+..||.+-++.+...+. .
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al---~G~~Vhvv--T~ndyLA~RD~e~m~~l~~-~ 149 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVV--TVNDYLARRDANWMRPLYE-F 149 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH---cCCCEEEE--eCCHHHHHHHHHHHHHHhc-c
Confidence 4455555566677777776777799999999999888777765543 34444444 3999999999998877664 4
Q ss_pred cCcEeeEEEecc----cccCCCceEEEEcHHHH-HHHHhcCC-------CCCCceEEEEecCcc
Q 046397 85 LGESVGYKVRLE----GMKGRDTRLLFCTTGIL-LRRLLVDR-------NLKGVTHVIVDEVHE 136 (901)
Q Consensus 85 ~g~~vGy~vr~e----~~~~~~t~Ii~~T~g~L-lr~L~~~~-------~l~~~~~IIIDE~He 136 (901)
+|-.||.-.... ....-.++|+|+|..-+ .+.|+.+- ...++.++||||+|.
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 566666432211 11112489999999876 22222211 347889999999993
No 139
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=8.8e-10 Score=132.65 Aligned_cols=108 Identities=24% Similarity=0.279 Sum_probs=87.2
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC---
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN--- 360 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp--- 360 (901)
..+.++||||++++..+.+.+.|...++... .+|+ ...+|...+..|..+...|+||||+|++|+||+
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~-------vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~ 666 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAHN-------VLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGE 666 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCce-------eecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCcc
Confidence 3467999999999999999999998765533 7786 577888888899999999999999999999999
Q ss_pred CeE-----EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcch
Q 046397 361 DVV-----FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 361 ~V~-----~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
+|. +||.+.++ -|+..+.||+|||||. .||.+..+++.++
T Consensus 667 ~V~~vGGL~VIgterh------------------es~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 667 GVRELGGLFILGSERH------------------ESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred chhhhCCceeeCCCCC------------------chHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 554 34653333 2455677999999999 5899988887643
No 140
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.04 E-value=1.8e-08 Score=116.74 Aligned_cols=376 Identities=18% Similarity=0.173 Sum_probs=211.5
Q ss_pred cHHHHHHHHHHHH----cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 10 AYKEKNRLLTAIS----QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 10 i~~~q~~il~~i~----~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
+++||.+-++.+. ++.--|+--+-|-|||.|+..|+..-.....-.++..||| |.-++ .|+.+.++.... .+
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVC--P~Tii-~qW~~E~~~w~p-~~ 281 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVC--PATII-HQWMKEFQTWWP-PF 281 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEc--cHHHH-HHHHHHHHHhCc-ce
Confidence 6889999998884 4556789999999999999988764433212234567777 88654 355555544321 11
Q ss_pred CcEeeE-----------------EEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcc-cCcchhHHHH
Q 046397 86 GESVGY-----------------KVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHE-RGMNEDFLLI 146 (901)
Q Consensus 86 g~~vGy-----------------~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~He-R~~~~d~ll~ 146 (901)
-..+.+ ...+.........|+++|..-+. +..++ .-..+.++|+||.|. |..+++..+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpns~isla 359 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPNSKISLA 359 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCccHHHHH
Confidence 111111 11112223345568888876553 23343 234578999999994 6777876665
Q ss_pred HHHHHHhhCCCceEEEeccCCCHHHHHhhhCCCcEEeeCCcc--ccceEEeccchhhhcccccCCCCCCc-chhhH----
Q 046397 147 VLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFT--YPVRTHFLEDILDMTGYRLTPYNQID-DYGQE---- 219 (901)
Q Consensus 147 ~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~--~pV~~~~l~d~~~~~~~~~~~~~~~~-~~~~~---- 219 (901)
..+ .+..+.|+||.|+=.+.+.++|.-- -+..||+. .||=....+.++...+|.-.+...+. .|...
T Consensus 360 ckk-----i~T~~RiILSGTPiQNnL~ELwsLf-DFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 360 CKK-----IRTVHRIILSGTPIQNNLTELWSLF-DFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred HHh-----ccccceEEeeCccccchHHHHHHHh-hhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 443 3556778899998444444433200 01233432 33333333444444554332211110 00000
Q ss_pred -----HHhH-h----hc-ccchhhhh-------hhH-HHHHHHHHhhc----ccc-----cchhhhhhcccC--------
Q 046397 220 -----KMWK-M----SK-QAPRKRKS-------QIA-SAVEDTLKAAN----FNE-----YSSQTRESLSCW-------- 263 (901)
Q Consensus 220 -----~~~~-~----~~-~~~~~~~~-------~~~-~~i~~~l~~~~----~~~-----~~~~~~~~l~~~-------- 263 (901)
.+.. + .. ..+.+... ... ....+.+.... ++. +.......+++.
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcc
Confidence 0000 0 00 11111110 000 01111111000 000 011111111110
Q ss_pred --CCCCCch----------hhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHH
Q 046397 264 --NPDCIGF----------NLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSE 331 (901)
Q Consensus 264 --~~~~i~~----------~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~e 331 (901)
.....|+ ..+..++....+ .+.++|+|-.++..+.-+...|... ..+..+-+.|..+...
T Consensus 514 ~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k--qg~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 514 EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK--QGDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAAL 585 (923)
T ss_pred cccccCCCcCCChhhcchHHHHHHHHHHHhh--CCCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccch
Confidence 0111222 234444444433 3459999999998888888887741 3456778999999999
Q ss_pred HHhhcCCCCCCCe--EEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCc
Q 046397 332 QRLIFDEPESGVR--KIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGE 409 (901)
Q Consensus 332 q~~i~~~f~~g~~--kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~ 409 (901)
|....+.|.++.- -.+++|-+..-|+|+-+.+-||- |||..|.+.=. +|.-|+=|-|....=.
T Consensus 586 R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII--------fDPdWNPStD~-------QAreRawRiGQkkdV~ 650 (923)
T KOG0387|consen 586 RQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII--------FDPDWNPSTDN-------QARERAWRIGQKKDVV 650 (923)
T ss_pred hhHHHHhhcCCCceEEEEEEecccccccccccCceEEE--------ECCCCCCccch-------HHHHHHHhhcCccceE
Confidence 9999999997654 35789999999999999998887 89888877544 6667777777777788
Q ss_pred eEEcCCcchhh
Q 046397 410 CYRLYPRCVYD 420 (901)
Q Consensus 410 c~~L~s~~~~~ 420 (901)
.|||.+...-+
T Consensus 651 VYRL~t~gTIE 661 (923)
T KOG0387|consen 651 VYRLMTAGTIE 661 (923)
T ss_pred EEEEecCCcHH
Confidence 99998876554
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.03 E-value=2.4e-08 Score=125.45 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=83.6
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhc
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAET 355 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaet 355 (901)
.+..++. ..+|.+|||+++.+..+.+++.|...... ..+.++. . ++....+.++.+.|+.+...|+++|...-+
T Consensus 743 ~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~---~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 743 YIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL---EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc---cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 3344433 34689999999999999999999764221 1122222 2 232234566777787788899999999999
Q ss_pred ccCCCCe--EEEEeCCCccccccccCCC--------------cccccc--ccccHhcHHHHhhhcCCCC--CCceEEc
Q 046397 356 SITINDV--VFVIDCGKAKETSYDALNN--------------TSCLLP--SWISTVSAQQRRGRAGRVQ--PGECYRL 413 (901)
Q Consensus 356 GIdIp~V--~~VId~G~~k~~~yd~~~~--------------~~~l~~--~~iSka~~~QR~GRAGR~~--~G~c~~L 413 (901)
|||+|+- ..||-.++| |.++.. -..+.. .|..-....|-+||.=|.. .|..+.|
T Consensus 817 GVD~pg~~l~~viI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred ccccCCCceEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 9999974 788888888 433321 011111 1223346789999999985 4665554
No 142
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.98 E-value=4.3e-10 Score=97.82 Aligned_cols=71 Identities=34% Similarity=0.478 Sum_probs=63.1
Q ss_pred eEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHH
Q 046397 318 VLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQ 397 (901)
Q Consensus 318 ~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 397 (901)
+.+..+||+++.++|..+++.|..+..+|+++|+++++|+|+|++..||. +++ |.|...+.|
T Consensus 12 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~----------~~~~~~~~Q 73 (82)
T smart00490 12 IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDL----------PWSPASYIQ 73 (82)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCC----------CCCHHHHHH
Confidence 45789999999999999999999999999999999999999999999998 433 346678889
Q ss_pred HhhhcCCCC
Q 046397 398 RRGRAGRVQ 406 (901)
Q Consensus 398 R~GRAGR~~ 406 (901)
++||+||.+
T Consensus 74 ~~gR~~R~g 82 (82)
T smart00490 74 RIGRAGRAG 82 (82)
T ss_pred hhcccccCC
Confidence 999999963
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=1.2e-07 Score=112.98 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=74.1
Q ss_pred HHHHHHHhh-cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC-CeEEEEecch
Q 046397 275 YVLCYICEK-ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESG-VRKIVLATNI 352 (901)
Q Consensus 275 ~ll~~i~~~-~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g-~~kIIvaTni 352 (901)
.++..+... ..+.||||.+.+.+..+.+.+.|...++... .|++.-...|-. |+. ..| .-.|.||||+
T Consensus 414 Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~-------vLNAk~~e~EA~-IIa--~AG~~GaVTIATNM 483 (925)
T PRK12903 414 AVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHT-------VLNAKQNAREAE-IIA--KAGQKGAITIATNM 483 (925)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCce-------eecccchhhHHH-HHH--hCCCCCeEEEeccc
Confidence 344444432 3567999999999999999999998766533 455543323333 332 234 2368999999
Q ss_pred hhcccCCCCeE--------EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC-CCceEEc
Q 046397 353 AETSITINDVV--------FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-PGECYRL 413 (901)
Q Consensus 353 aetGIdIp~V~--------~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L 413 (901)
|++|.||.--. +||-+.++...+- =.|-+|||||.+ ||.+-.+
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI------------------DnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAESRRI------------------DNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCchHHH------------------HHHHhcccccCCCCCcceEE
Confidence 99999996322 7886555543332 239999999994 7865433
No 144
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.92 E-value=6e-08 Score=115.26 Aligned_cols=161 Identities=20% Similarity=0.147 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHHc----------CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-C--eeEEEEecchHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQ----------NQVVIISGETGCGKTTQVPQFILESEITSVRG-A--VCSIICTQPRRISAMSVSER 76 (901)
Q Consensus 10 i~~~q~~il~~i~~----------~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~--~~~IlvtqPrr~la~qva~r 76 (901)
+++||.|.++-+-+ ..-.|++-+.|+|||.|..-+|...+-. ... . -.+.+|+.|. .+...+++.
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCccccccccEEEccH-HHHHHHHHH
Confidence 46788888877632 2346888899999999988887755432 222 0 0234444487 455666666
Q ss_pred HHHHhCC-ccCcEeeEEEecc-----------cccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHH
Q 046397 77 VASERGE-KLGESVGYKVRLE-----------GMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFL 144 (901)
Q Consensus 77 va~e~~~-~~g~~vGy~vr~e-----------~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~l 144 (901)
|.+..+. .+....=|...-+ ....-.+.+.+-+.+.+.+... .-.+..++++|+||.| |--+++.+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~-~il~~~~glLVcDEGH-rlkN~~s~ 394 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR-KILLIRPGLLVCDEGH-RLKNSDSL 394 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH-HHhcCCCCeEEECCCC-CccchhhH
Confidence 6665553 3322221221111 0111234566777777754332 2256778999999999 44455532
Q ss_pred HHHHHHHHhhCCCceEEEeccCCCHHHHHhhhC
Q 046397 145 LIVLKDLLSRRPELRLVLMSATLDAELFSSYFG 177 (901)
Q Consensus 145 l~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~ 177 (901)
+...+..-.-.|-|++|.|+=.+.|.+||+
T Consensus 395 ---~~kaL~~l~t~rRVLLSGTp~QNdl~EyFn 424 (776)
T KOG0390|consen 395 ---TLKALSSLKTPRRVLLTGTPIQNDLKEYFN 424 (776)
T ss_pred ---HHHHHHhcCCCceEEeeCCcccccHHHHHH
Confidence 333444445567899999998888999997
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.92 E-value=7.6e-09 Score=124.04 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=88.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC-CccCcEeeEEEec---------cc
Q 046397 28 IISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG-EKLGESVGYKVRL---------EG 97 (901)
Q Consensus 28 iI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~-~~~g~~vGy~vr~---------e~ 97 (901)
+..+.+|||||..+.+.+.+.+. .|+...|+ .|...++.|+.+++...++ ..+. .|.-.. ..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~---~Gk~vLvL--vPEi~lt~q~~~rl~~~f~~~~v~---~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR---AGRGALVV--VPDQRDVDRLEAALRALLGAGDVA---VLSAGLGPADRYRRWLA 235 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH---cCCeEEEE--ecchhhHHHHHHHHHHHcCCCcEE---EECCCCCHHHHHHHHHH
Confidence 44455799999988888766542 34444444 4999999999999998887 3322 222111 12
Q ss_pred ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHH-HHHH---HHhhCCCceEEEeccCCCHHHHH
Q 046397 98 MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLI-VLKD---LLSRRPELRLVLMSATLDAELFS 173 (901)
Q Consensus 98 ~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~-~lk~---ll~~~~~~kiIlmSATl~~~~f~ 173 (901)
......+|+++|-..++- .+.++++|||||-|+-+...+-... -.++ ...+..+..+|+.|||++.+.+.
T Consensus 236 ~~~G~~~IViGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 236 VLRGQARVVVGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred HhCCCCcEEEEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 234567899999876654 6889999999999964443331000 1222 22345688999999999988765
Q ss_pred h
Q 046397 174 S 174 (901)
Q Consensus 174 ~ 174 (901)
.
T Consensus 310 ~ 310 (665)
T PRK14873 310 L 310 (665)
T ss_pred H
Confidence 4
No 146
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.90 E-value=6.4e-08 Score=116.03 Aligned_cols=125 Identities=21% Similarity=0.141 Sum_probs=80.6
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
++.|-+..+--+++-.+.-++--|....||-|||+.+.++++-.++ .|..+.|+ | +...||..-++.+...+ ..
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVv-T-~NdyLA~RD~e~m~pvy-~~ 143 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIV-T-VNDYLAKRDQEWMGQIY-RF 143 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEE-e-CCHHHHHHHHHHHHHHH-HH
Confidence 3444455555677888777788899999999999888777654333 34444443 3 88899888777665443 24
Q ss_pred cCcEeeEEEeccc----ccCCCceEEEEcHH-----HHHHHHhcCC---CCCCceEEEEecCc
Q 046397 85 LGESVGYKVRLEG----MKGRDTRLLFCTTG-----ILLRRLLVDR---NLKGVTHVIVDEVH 135 (901)
Q Consensus 85 ~g~~vGy~vr~e~----~~~~~t~Ii~~T~g-----~Llr~L~~~~---~l~~~~~IIIDE~H 135 (901)
+|-+||.-..... ...-.++|+|+|.. .|...+...+ ....+.+.|||||+
T Consensus 144 LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred cCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 5666665332111 11235799999985 4444443222 35678899999999
No 147
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.90 E-value=9.1e-08 Score=113.43 Aligned_cols=323 Identities=17% Similarity=0.170 Sum_probs=168.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccC-
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG- 100 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~- 100 (901)
..+.+.+|.+|.||||||++..|+.+.+- ....+++++..||.++.+++.++... .+.+.+-|....+....
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~---~l~gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKA---GLSGFVNYLDSDDYIIDG 119 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhc---CCCcceeeeccccccccc
Confidence 46778999999999999999888766431 23347888889999999999999533 11233333322222111
Q ss_pred CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCccc--Ccch------hHHHHHHHHHHhhCCCceEEEeccCCCHH--
Q 046397 101 RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHER--GMNE------DFLLIVLKDLLSRRPELRLVLMSATLDAE-- 170 (901)
Q Consensus 101 ~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR--~~~~------d~ll~~lk~ll~~~~~~kiIlmSATl~~~-- 170 (901)
...+-++++.+.|.|.. .+.+.++++|||||+-.- .+.+ .....+++.+++. .-++|+|-||++..
T Consensus 120 ~~~~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTV 195 (824)
T ss_pred cccCeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHH
Confidence 12344555555666532 346888999999999730 0111 1222334444443 34799999999876
Q ss_pred HHHhhhCCCcEEee-CC----ccccceE-EeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHH
Q 046397 171 LFSSYFGGATVINI-PG----FTYPVRT-HFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTL 244 (901)
Q Consensus 171 ~f~~yf~~~~~i~i-~g----r~~pV~~-~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 244 (901)
.|-+.+.+..-+++ .+ ..|.-.. .++... +.+ .+...+
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l-----------------~~~-------------------~l~~~~ 239 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSL-----------------GTD-------------------TLAAAL 239 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEeccc-----------------CcH-------------------HHHHHh
Confidence 33344543322221 11 1111111 111110 000 000000
Q ss_pred Hhhc-ccccchh---hhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397 245 KAAN-FNEYSSQ---TRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL 320 (901)
Q Consensus 245 ~~~~-~~~~~~~---~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v 320 (901)
...+ ...-... ....................+...+ ..+..|-||+.+..-.+.+++..... ...|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~~-------~~~V 309 (824)
T PF02399_consen 240 NPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCARF-------TKKV 309 (824)
T ss_pred CCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHhc-------CCeE
Confidence 0000 0000000 0000000000000011122223333 34567778998888888777777654 1236
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG 400 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 400 (901)
+.++|.-+.. .+ +. =++.+|++=|++...|+++.+..+=--.++.|-..+ - .+..+..|+.|
T Consensus 310 l~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~-----g-------pd~~s~~Q~lg 371 (824)
T PF02399_consen 310 LVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSY-----G-------PDMVSVYQMLG 371 (824)
T ss_pred EEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCC-----C-------CcHHHHHHHHH
Confidence 6777765544 22 22 356899999999999999975532111111111111 1 12335779999
Q ss_pred hcCCCCCCceEEcCCcchh
Q 046397 401 RAGRVQPGECYRLYPRCVY 419 (901)
Q Consensus 401 RAGR~~~G~c~~L~s~~~~ 419 (901)
|+=.......|..+.....
T Consensus 372 RvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 372 RVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred HHHhhccCeEEEEEecccc
Confidence 9977777777766655433
No 148
>COG4889 Predicted helicase [General function prediction only]
Probab=98.76 E-value=6e-09 Score=120.74 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=75.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhC------ccCC--CCCceEEEEecCCCCHHHHHhhcC---CCCCCCeEEEEecchhhcc
Q 046397 288 AVLVFMTGWDDINSLNDKLQAN------RILG--DPTRVLLLTCHGSMASSEQRLIFD---EPESGVRKIVLATNIAETS 356 (901)
Q Consensus 288 ~iLVFl~~~~~i~~l~~~L~~~------~~~~--~~~~~~v~~lhs~l~~~eq~~i~~---~f~~g~~kIIvaTniaetG 356 (901)
+.+-||.+.++-..+++.+..- .... ...++.+-...|.|...+|..... .|++..+||+-.--.+.+|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 5566776666665555544320 0011 122344556678999888855443 5688999999988999999
Q ss_pred cCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceE
Q 046397 357 ITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECY 411 (901)
Q Consensus 357 IdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~ 411 (901)
||+|..+-||- ||+.+.+-..+ |-.||+.|..+|+-|
T Consensus 542 VDVPaLDsViF--------f~pr~smVDIV----------QaVGRVMRKa~gK~y 578 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSSMVDIV----------QAVGRVMRKAKGKKY 578 (1518)
T ss_pred CCccccceEEE--------ecCchhHHHHH----------HHHHHHHHhCcCCcc
Confidence 99999999997 88888666555 999999999888654
No 149
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.74 E-value=2.2e-07 Score=112.30 Aligned_cols=144 Identities=22% Similarity=0.198 Sum_probs=102.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCC---CCCeEEEEe
Q 046397 273 IEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPE---SGVRKIVLA 349 (901)
Q Consensus 273 i~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~---~g~~kIIva 349 (901)
+..|+..+- ..+.+||||-.-+....-|+++|...++. .--+.|++..+-|+.+++.|. +...-.|+|
T Consensus 688 LDKLL~rLk--~~GHrVLIFSQMVRmLDIL~eYL~~r~yp-------fQRLDGsvrgelRq~AIDhFnap~SddFvFLLS 758 (1373)
T KOG0384|consen 688 LDKLLPRLK--EGGHRVLIFSQMVRMLDILAEYLSLRGYP-------FQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLS 758 (1373)
T ss_pred HHHHHHHHh--cCCceEEEhHHHHHHHHHHHHHHHHcCCc-------ceeccCCcchHHHHHHHHhccCCCCCceEEEEe
Confidence 344444442 34579999999888888889998876543 236899999999999988885 345678999
Q ss_pred cchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhhh-cccCCCC
Q 046397 350 TNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYDA-FAEYQLP 428 (901)
Q Consensus 350 TniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~~-l~~~~~P 428 (901)
|-..+-|||+-..+.||. ||...|...=+ +|.=|+-|.|....=..|||.|+..|+. |.+..
T Consensus 759 TRAGGLGINLatADTVII--------FDSDWNPQNDL-------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA-- 821 (1373)
T KOG0384|consen 759 TRAGGLGINLATADTVII--------FDSDWNPQNDL-------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA-- 821 (1373)
T ss_pred cccCcccccccccceEEE--------eCCCCCcchHH-------HHHHHHHhhcccceEEEEEEecCCchHHHHHHHH--
Confidence 999999999998888876 77766665444 3344555555555668999999998874 22211
Q ss_pred cccccCccchhhhhh
Q 046397 429 EILRTPLQSLCLQIK 443 (901)
Q Consensus 429 Ei~r~~L~~~~L~~k 443 (901)
=+.+-|+.+++|.-
T Consensus 822 -k~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 822 -KLKMVLDHAVIQRM 835 (1373)
T ss_pred -HHHhhhHHHHHHhh
Confidence 02345677777653
No 150
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.71 E-value=2e-07 Score=104.23 Aligned_cols=110 Identities=22% Similarity=0.195 Sum_probs=91.3
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeE
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVV 363 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~ 363 (901)
..+.++||-.-|+..++.+.+.|.+.++ .+-++||.+..-||.+++...+.|...|||.-|.+-.|+|+|.|.
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gi-------kv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVs 516 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGI-------KVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVS 516 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCc-------eEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCccee
Confidence 3457999999999999999999998754 466999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEc
Q 046397 364 FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRL 413 (901)
Q Consensus 364 ~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L 413 (901)
+|.-..--|+-. + -|-.+.+|-+|||.|.-.|+++..
T Consensus 517 LVAIlDADKeGF----------L---Rse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 517 LVAILDADKEGF----------L---RSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred EEEEeecCcccc----------c---cccchHHHHHHHHhhccCCeEEEE
Confidence 986422222111 1 255577799999999999987644
No 151
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.71 E-value=9.1e-07 Score=106.77 Aligned_cols=116 Identities=16% Similarity=0.288 Sum_probs=87.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC-CeEE-EEecchhhcccCCCCeE
Q 046397 286 PGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESG-VRKI-VLATNIAETSITINDVV 363 (901)
Q Consensus 286 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g-~~kI-IvaTniaetGIdIp~V~ 363 (901)
..++||||.-+..+.-+.+.|.+... ..+..+.+.|+.++.+|.++.++|.++ .+.| +++|-+.+-|+|+-+.+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~m----psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGAD 1415 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYM----PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGAD 1415 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhc----CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCc
Confidence 45899999999888888887765422 234466899999999999999999988 6776 56889999999999999
Q ss_pred EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 364 FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 364 ~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
.||- -+-.|+|-+.+ +|.-|+-|-|..+-=-+|||+++...+
T Consensus 1416 TVVF----vEHDWNPMrDL-----------QAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1416 TVVF----VEHDWNPMRDL-----------QAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred eEEE----EecCCCchhhH-----------HHHHHHHhhcCceeeeeeeehhcccHH
Confidence 9984 11224554432 345566666666666789999987654
No 152
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=4.6e-06 Score=100.29 Aligned_cols=125 Identities=21% Similarity=0.167 Sum_probs=82.6
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
|+.|-+..|--+++-.+.=++--|....||-|||+.+.++++-.++ .|+.+.| || +..-||..-++.+.... .-
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL---~GkgVhV-VT-vNdYLA~RDae~m~~vy-~~ 152 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL---TGKGVHV-VT-VNDYLARRDAEWMGQVH-RF 152 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhh---cCCCeEE-Ee-CCHHHHHhHHHHHHHHH-HH
Confidence 4556666667778888877788899999999999888877765554 3333433 33 77778776666554433 23
Q ss_pred cCcEeeEEEec----ccccCCCceEEEEcHHHH-----HHHHhcCC---CCCCceEEEEecCc
Q 046397 85 LGESVGYKVRL----EGMKGRDTRLLFCTTGIL-----LRRLLVDR---NLKGVTHVIVDEVH 135 (901)
Q Consensus 85 ~g~~vGy~vr~----e~~~~~~t~Ii~~T~g~L-----lr~L~~~~---~l~~~~~IIIDE~H 135 (901)
+|-+||.-... +....-.++|+|+|+.-| .+.+..+. ....+.+.|||||+
T Consensus 153 LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred hCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 46666653321 111223689999998755 44444322 45778899999999
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=1.9e-06 Score=105.92 Aligned_cols=141 Identities=15% Similarity=0.143 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC---CCceEEEEecCCCCHHHHHhhcCCCCC----CCeEE
Q 046397 274 EYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD---PTRVLLLTCHGSMASSEQRLIFDEPES----GVRKI 346 (901)
Q Consensus 274 ~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~---~~~~~v~~lhs~l~~~eq~~i~~~f~~----g~~kI 346 (901)
...+..++.. .+|.+|||+|+....+.+.+.+...+.... ...+.+-+ . + ..++..+++.|.. |.-.|
T Consensus 511 ~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~-~--~~~~~~~l~~f~~~~~~~~gav 585 (705)
T TIGR00604 511 GELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-K-D--AQETSDALERYKQAVSEGRGAV 585 (705)
T ss_pred HHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-C-C--cchHHHHHHHHHHHHhcCCceE
Confidence 3344455444 368999999999999999998876533210 11111111 1 1 1456667777743 45569
Q ss_pred EEec--chhhcccCCCC--eEEEEeCCCccccccccCCC-------------ccccccccccHhcHHHHhhhcCCCCCCc
Q 046397 347 VLAT--NIAETSITIND--VVFVIDCGKAKETSYDALNN-------------TSCLLPSWISTVSAQQRRGRAGRVQPGE 409 (901)
Q Consensus 347 IvaT--niaetGIdIp~--V~~VId~G~~k~~~yd~~~~-------------~~~l~~~~iSka~~~QR~GRAGR~~~G~ 409 (901)
++|+ ....+|||++| .+.||-.|+|-....|+... -......+-.--...|-+||+=|.....
T Consensus 586 L~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 586 LLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred EEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCce
Confidence 9999 89999999997 57888899985322121100 0000001111235679999999996544
Q ss_pred eEEcCCcchh
Q 046397 410 CYRLYPRCVY 419 (901)
Q Consensus 410 c~~L~s~~~~ 419 (901)
...++-..+|
T Consensus 666 G~iillD~R~ 675 (705)
T TIGR00604 666 GSIVLLDKRY 675 (705)
T ss_pred EEEEEEehhc
Confidence 3333333334
No 154
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=98.51 E-value=3.3e-07 Score=76.89 Aligned_cols=63 Identities=32% Similarity=0.449 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHhcCCCCCceee-eeccCC---ceEEEEEEcC-eeeeccCCCchhhHHHHHHHHHHHHH
Q 046397 812 NSKSQLQTLLTRAGYAAPSYRT-KQLKNG---QFRSTVEFNG-MEIMGQPCNNKKNAEKDAAAEALQWI 875 (901)
Q Consensus 812 ~~~~~l~~~~~~~~~~~p~~~~-~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (901)
||++.|++++++.+...|.|.+ ...+++ .|.++|.++| ..+.|.- +|||.||.+||..||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g-~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEG-SSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999 445554 4999999999 6677765 599999999999999865
No 155
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=98.42 E-value=7.6e-07 Score=74.56 Aligned_cols=62 Identities=32% Similarity=0.397 Sum_probs=52.9
Q ss_pred cHHHHHHHHHhcCCCCCceeeee-ccCC---ceEEEEEEcCee-eeccCCCchhhHHHHHHHHHHHHHh
Q 046397 813 SKSQLQTLLTRAGYAAPSYRTKQ-LKNG---QFRSTVEFNGME-IMGQPCNNKKNAEKDAAAEALQWIM 876 (901)
Q Consensus 813 ~~~~l~~~~~~~~~~~p~~~~~~-~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (901)
|++.|++++++.|. .|.|.+.. .++. .|.++|.++|.. ++|. +.|||.||.+||..||..|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGE-GSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHhcC
Confidence 78999999999999 89999865 4443 499999999955 4554 89999999999999999873
No 156
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.41 E-value=3.5e-05 Score=85.67 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=80.5
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC-CeE-EEEecchhhcccCCCC
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESG-VRK-IVLATNIAETSITIND 361 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g-~~k-IIvaTniaetGIdIp~ 361 (901)
.++.+.+||+....-.+.+...+.+.+ +..+-+.|+.++.+|...-+.|... +.+ -|++-..+.+|+|+..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~-------vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tA 562 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRK-------VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTA 562 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcC-------CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeec
Confidence 456799999999888888888887653 3355789999999999999988743 334 4788899999999999
Q ss_pred eEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcc
Q 046397 362 VVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRC 417 (901)
Q Consensus 362 V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~ 417 (901)
...||-.-+. .+..-|+ ++.-|+-|.|....=..+.|.-+.
T Consensus 563 a~~VVFaEL~--------wnPgvLl-------QAEDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 563 ASVVVFAELH--------WNPGVLL-------QAEDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred cceEEEEEec--------CCCceEE-------echhhhhhccccceeeEEEEEecC
Confidence 9999853333 3333444 555677777766554445555443
No 157
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=98.41 E-value=5.6e-07 Score=75.49 Aligned_cols=63 Identities=29% Similarity=0.366 Sum_probs=52.4
Q ss_pred cHHHHHHHHHhcCCCCCceeeeeccCC----ceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHH
Q 046397 813 SKSQLQTLLTRAGYAAPSYRTKQLKNG----QFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWI 875 (901)
Q Consensus 813 ~~~~l~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (901)
|+++|+++.++.+...|.|.....++. .|.++|.++|..|..--++|||.|+.+||..|++.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 689999999999988877766444432 599999999999954445699999999999999987
No 158
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=98.40 E-value=6.2e-07 Score=88.17 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=58.1
Q ss_pred CCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.|||+.||+.+|+.+..+ .|.+. ..++.| |.++|.++|..|.---++|||.||++||..||..|.+.
T Consensus 108 ~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 108 LNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 399999999999998877 79774 445555 99999999998886778999999999999999998653
No 159
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.38 E-value=3.5e-06 Score=100.16 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH
Q 046397 14 KNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78 (901)
Q Consensus 14 q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva 78 (901)
-+.|.+++.+++.+++.++||+|||.+++.+++..+... ...+++|+.||++|+.|+.+.+.
T Consensus 6 ~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 6 YLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHH
Confidence 356778888999999999999999999999988765421 12467888899999999997554
No 160
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=98.38 E-value=8.5e-07 Score=87.94 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.|||+.||+.+|+.+... .|.+...++.| |.++|.++|..|.--.++|||.||.+||..||..|.+
T Consensus 109 kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 109 KNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred CChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 399999999999988764 55555667666 9999999999998678999999999999999999965
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.28 E-value=4.7e-06 Score=91.45 Aligned_cols=133 Identities=20% Similarity=0.094 Sum_probs=72.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-C--eeEEEEecchHHHHHHHHHHHHHHhCC-ccCcEeeEEEec--
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRG-A--VCSIICTQPRRISAMSVSERVASERGE-KLGESVGYKVRL-- 95 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~--~~~IlvtqPrr~la~qva~rva~e~~~-~~g~~vGy~vr~-- 95 (901)
...+..+++-++|+|||.++..++... ...... . .+.|+| |. .+..+....+.+.... .. ..+-|.-..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l-~~~~~~~~~~~~LIv~--P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~ 97 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYL-KNEFPQRGEKKTLIVV--PS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSER 97 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHH-HHCCTTSS-S-EEEEE---T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHH
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhh-hhccccccccceeEee--cc-chhhhhhhhhccccccccc-ccccccccccc
Confidence 355788999999999998887776532 222221 1 244444 99 5667888888766632 22 111111111
Q ss_pred ---ccccCCCceEEEEcHHHHH--------HHHhcCCCCCCceEEEEecCccc-CcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 96 ---EGMKGRDTRLLFCTTGILL--------RRLLVDRNLKGVTHVIVDEVHER-GMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 96 ---e~~~~~~t~Ii~~T~g~Ll--------r~L~~~~~l~~~~~IIIDE~HeR-~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
........+++++|.+.+. ..+. . -++++|||||+|.- +..+... +.+.. ....+.++|
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~---~-~~~~~vIvDEaH~~k~~~s~~~----~~l~~-l~~~~~~lL 168 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLK---Q-IKWDRVIVDEAHRLKNKDSKRY----KALRK-LRARYRWLL 168 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHH---T-SEEEEEEETTGGGGTTTTSHHH----HHHHC-CCECEEEEE
T ss_pred ccccccccccceeeeccccccccccccccccccc---c-ccceeEEEeccccccccccccc----ccccc-cccceEEee
Confidence 1122356789999999998 1121 1 34899999999963 2233222 22222 235677889
Q ss_pred ccCCC
Q 046397 164 SATLD 168 (901)
Q Consensus 164 SATl~ 168 (901)
|||+-
T Consensus 169 SgTP~ 173 (299)
T PF00176_consen 169 SGTPI 173 (299)
T ss_dssp -SS-S
T ss_pred ccccc
Confidence 99973
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.13 E-value=0.00011 Score=92.41 Aligned_cols=132 Identities=17% Similarity=0.098 Sum_probs=80.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEec-----cccc
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRL-----EGMK 99 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~-----e~~~ 99 (901)
+.-+|.--||||||..... +...+.+. .....|+++.-|+.|-.|+.+.++..-.... . +. +..- +...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~-~-~~-~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF-N-DP-KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhh-h-cc-cccCHHHHHHHHh
Confidence 3589999999999955433 33333333 2344666777999999999988855422111 1 01 1100 0011
Q ss_pred CCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 100 GRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 100 ~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
.....|+|+|-+-+-....... .-..==+||+|||| |+-.. .+-..++. ..++...+++|+|+
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G-~~~~~~~~---~~~~a~~~gFTGTP 413 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYG-ELAKLLKK---ALKKAIFIGFTGTP 413 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechh-hcccc-HHHHHHHH---HhccceEEEeeCCc
Confidence 1246899999998877665541 11222378999999 65444 34444444 34558899999997
No 163
>PRK12371 ribonuclease III; Reviewed
Probab=98.12 E-value=5.6e-06 Score=87.38 Aligned_cols=67 Identities=24% Similarity=0.234 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.|||+.||+++++.+...|.|.+. ..++.| |.++|.++|..+.---++|||.||++||..||+-|..
T Consensus 161 ~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 161 RDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 399999999999999999999985 445433 9999999998865347899999999999999988754
No 164
>PRK14718 ribonuclease III; Provisional
Probab=98.11 E-value=6.3e-06 Score=91.71 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeee-ccCCc---eEEEEEEcCeeeec-cCCCchhhHHHHHHHHHHHHHh
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQ-LKNGQ---FRSTVEFNGMEIMG-QPCNNKKNAEKDAAAEALQWIM 876 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 876 (901)
.|+|+.||+++|..+...|.|.+.. .++.| |...|.++|..+.| -.++|||.||++||..||+-|+
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999853 44444 99999999987643 2489999999999999999986
No 165
>PRK12372 ribonuclease III; Reviewed
Probab=98.08 E-value=7.8e-06 Score=90.58 Aligned_cols=65 Identities=25% Similarity=0.379 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeee--eccCCCchhhHHHHHHHHHHHHHhc
Q 046397 812 NSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEI--MGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 812 ~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
|+|+.||+++|+.+...|.|++. ..+.+| |.+.|.++|..+ .|. ++|||.||.+||..||+-|+.
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~-G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGS-GASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEE-eCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999985 334444 999999999766 454 799999999999999999984
No 166
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.05 E-value=3e-05 Score=79.85 Aligned_cols=128 Identities=27% Similarity=0.364 Sum_probs=83.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
++++++||||+||||.+.......... +....++++-..|+.|.+..+.+++.++.++. ..+.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~-----~~~~~~------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFY-----VARTES------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEE-----ESSTTS-------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccc-----hhhcch-------
Confidence 478999999999999999887765433 66788999999999999999999888874421 110000
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceEEEeccCCCHHHH
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRLVLMSATLDAELF 172 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~kiIlmSATl~~~~f 172 (901)
.|..+++.......-+++++|+||-+. |+.....++.-++.++.. .+.-.++.||||...+.+
T Consensus 67 ----~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 ----DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 132233221111123568999999998 555555555666666654 455567889999966543
No 167
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=8.4e-05 Score=84.01 Aligned_cols=131 Identities=22% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhh-cCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITS-VRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~-~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.++++++||||+||||.+..+........ ..+..+.++.+-+.|+.|...-..+++.++.++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----------------- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----------------- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-----------------
Confidence 46899999999999999887765443322 245667777777888888776666655444332
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CC-ceEEEeccCCCHHHHHhhhC
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PE-LRLVLMSATLDAELFSSYFG 177 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~-~kiIlmSATl~~~~f~~yf~ 177 (901)
...-++.-+...+. .+.++++||||++. |.......+.-++.++... ++ -.++.+|||...+.+.+.|.
T Consensus 237 --~~~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 237 --KAIESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --EeeCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 01113344444443 24678999999998 4433222344555555533 34 36788999998776665543
No 168
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.00 E-value=1.4e-05 Score=76.41 Aligned_cols=118 Identities=21% Similarity=0.332 Sum_probs=67.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhh-cCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITS-VRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG 100 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~-~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 100 (901)
++++.++|.||+|+|||+.+-.++.+..... .......+.+..|.......+++.+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 3567899999999999998888776653211 11123345555566656677788888777755432
Q ss_pred CCceEEEEcHH----HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 101 RDTRLLFCTTG----ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 101 ~~t~Ii~~T~g----~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
-.|.. .+.+.+... ...+|||||+|+-. .+..+..++.+.. .+++++|+..-
T Consensus 69 ------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGT 124 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEES
T ss_pred ------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEEC
Confidence 11233 333333322 22799999999732 3555666666655 56677766543
No 169
>PRK00102 rnc ribonuclease III; Reviewed
Probab=97.96 E-value=1.7e-05 Score=83.96 Aligned_cols=67 Identities=31% Similarity=0.403 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeee-ccC---CceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQ-LKN---GQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.|||+.||+++++.|...|.|++.. .+. ..|.++|.++|..+..-.++|||.||.+||..|++-|++
T Consensus 158 ~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 158 KDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred CCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 5999999999999999999998743 333 349999999999998899999999999999999998864
No 170
>PF13245 AAA_19: Part of AAA domain
Probab=97.92 E-value=4e-05 Score=66.09 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=45.3
Q ss_pred HHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 18 LTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 18 l~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
..++..++.++|.||.|||||+.+...+.+........ ...|+|+.|++.++..+.+++
T Consensus 4 ~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 4 RRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 33555577888899999999988888877665322222 447888889999999999988
No 171
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.88 E-value=6.3e-05 Score=92.18 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=48.4
Q ss_pred CceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHH-HHHHHHhhCCCceEEEeccCCCH
Q 046397 102 DTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLI-VLKDLLSRRPELRLVLMSATLDA 169 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~-~lk~ll~~~~~~kiIlmSATl~~ 169 (901)
...|+++||.+|..-|.++. .++.++.|||||||. +..+.... +++.....+++.-|.+|||.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr--~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADR--IIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccc--ccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46799999999998887776 899999999999995 22222222 23333445667779999999854
No 172
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.83 E-value=0.0011 Score=77.95 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=84.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCC--eEEEEecchhhcccCCCCe
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGV--RKIVLATNIAETSITINDV 362 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~--~kIIvaTniaetGIdIp~V 362 (901)
.+.+||+|-.=..-..-+...|... ++..+.|.|+.+-.+|+.+++.|...+ .-+|+||-..+-|||+-..
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l-------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~A 848 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTL-------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCA 848 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhc-------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccccc
Confidence 3478999965444333333444433 355678999999999999999997643 3568999999999999999
Q ss_pred EEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 363 VFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 363 ~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
+.||-.... |+|... -+|.-|+-|.|.++|=..|+|+++..-+
T Consensus 849 n~VIihD~d----FNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 849 NTVIIHDID----FNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred ceEEEeecC----CCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999862221 444332 2577899999999999999999987654
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.81 E-value=0.00011 Score=75.84 Aligned_cols=121 Identities=24% Similarity=0.314 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 11 YKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 11 ~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
...|.+++..+..+ +.++|.|+.|+||||.+-. +.+.+.. .+ ..|+++.|+..++..+.+.. +
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~--~g--~~v~~~apT~~Aa~~L~~~~----~------ 67 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEA--AG--KRVIGLAPTNKAAKELREKT----G------ 67 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHH--TT----EEEEESSHHHHHHHHHHH----T------
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHh--CC--CeEEEECCcHHHHHHHHHhh----C------
Confidence 45688888888533 4889999999999986544 4444332 22 46777779999888877663 1
Q ss_pred eeEEEecccccCCCceEEEEcHHHHHHHHhcC-----CCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 89 VGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-----RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 89 vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-----~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
+-..|-..++...... +.+...++|||||+-. +....+..+++.+- ..+.|+|++
T Consensus 68 ----------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasm--v~~~~~~~ll~~~~--~~~~klilv 127 (196)
T PF13604_consen 68 ----------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASM--VDSRQLARLLRLAK--KSGAKLILV 127 (196)
T ss_dssp ----------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG---BHHHHHHHHHHS---T-T-EEEEE
T ss_pred ----------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccc--cCHHHHHHHHHHHH--hcCCEEEEE
Confidence 1112222222221110 0156678999999985 45544444443321 135688877
Q ss_pred ccC
Q 046397 164 SAT 166 (901)
Q Consensus 164 SAT 166 (901)
-=+
T Consensus 128 GD~ 130 (196)
T PF13604_consen 128 GDP 130 (196)
T ss_dssp E-T
T ss_pred CCc
Confidence 544
No 174
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.75 E-value=0.00059 Score=76.10 Aligned_cols=130 Identities=22% Similarity=0.280 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
++++.++||||.||||.+.......... .+.....|+-|--.|+-|...-+..++.++.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 7899999999999999988877665532 334567788888889999888888888877542
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce-EEEeccCCCHHHHHhhhC
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR-LVLMSATLDAELFSSYFG 177 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k-iIlmSATl~~~~f~~yf~ 177 (901)
.++-+|.-|...+. .+.++++|.||=+- |+........-++.+.....++. .+.+|||...+.+.+-+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 34556666666554 57788999999998 66666667777888777665555 578999997776665443
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.71 E-value=0.00013 Score=75.07 Aligned_cols=56 Identities=34% Similarity=0.414 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchH
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRR 67 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr 67 (901)
|....|...++++.+++.+++.||.|||||+.+....++...+ +..-+|+++-|..
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---g~~~kiii~Rp~v 59 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---GEYDKIIITRPPV 59 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---TS-SEEEEEE-S-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCcEEEEEecCC
Confidence 7778999999999999999999999999999998888887643 4556888887764
No 176
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=97.68 E-value=0.00013 Score=76.54 Aligned_cols=68 Identities=31% Similarity=0.388 Sum_probs=58.1
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeeec-cCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQL-KNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.|||..||+++++.+..+|.|+...- ++-| |...|.++|....=--+++||.||+.||..|+..|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 59999999999999999999999654 4444 99999999954433458999999999999999998764
No 177
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=97.68 E-value=0.00012 Score=63.54 Aligned_cols=65 Identities=28% Similarity=0.374 Sum_probs=57.6
Q ss_pred CcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeee----------ccCCCchhhHHHHHHHHHHHHHh
Q 046397 812 NSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIM----------GQPCNNKKNAEKDAAAEALQWIM 876 (901)
Q Consensus 812 ~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 876 (901)
+|...|+++-++.+-..|+|... ..++.+ |...|.++|..+. ++|+.+||+|+-.||.-|+++|.
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 68899999999999999999996 455555 9999999999883 49999999999999999999873
No 178
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.67 E-value=0.00025 Score=86.59 Aligned_cols=104 Identities=24% Similarity=0.316 Sum_probs=72.5
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC---
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN--- 360 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp--- 360 (901)
..+.||||-+.+++.-+.+.++|...++... .|++.....|-.-|-+.-.+| .|-||||+|++|-||.
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~-------VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~ 696 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRKIPHN-------VLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSP 696 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHH-------HhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccch
Confidence 3567999999999999999999998766433 344443334444443433344 5889999999999997
Q ss_pred -----CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC-CCceEEcC
Q 046397 361 -----DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-PGECYRLY 414 (901)
Q Consensus 361 -----~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L~ 414 (901)
+=-+||-+.++.. +--=.|-+|||||.+ ||.+-.+.
T Consensus 697 ~V~e~GGL~VIgTerheS------------------rRID~QLrGRaGRQGDPGsS~f~l 738 (1112)
T PRK12901 697 EVKAAGGLAIIGTERHES------------------RRVDRQLRGRAGRQGDPGSSQFYV 738 (1112)
T ss_pred hhHHcCCCEEEEccCCCc------------------HHHHHHHhcccccCCCCCcceEEE
Confidence 3347776555543 333449999999994 78654443
No 179
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.66 E-value=0.00042 Score=82.78 Aligned_cols=141 Identities=20% Similarity=0.205 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
..|.+.+.....++.++|+|+.|+||||.+-..+....-........+|+++.||--+|..+.+.+..... .+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 56777888888899999999999999988776554321111111124789999999998888777754332 11100
Q ss_pred EEecccccCCCceEEEEcHHHHHHHHhc-------CCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 92 KVRLEGMKGRDTRLLFCTTGILLRRLLV-------DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 92 ~vr~e~~~~~~t~Ii~~T~g~Llr~L~~-------~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
........+-..|-..|+..-.. ......+++|||||+=. ++...+..+++. ..++.|+|++-
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM--vd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM--VDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc--CCHHHHHHHHHh---cCCCCEEEEEC
Confidence 00000011223444444432111 11233589999999985 555544444442 34578888775
Q ss_pred cC
Q 046397 165 AT 166 (901)
Q Consensus 165 AT 166 (901)
=.
T Consensus 294 D~ 295 (586)
T TIGR01447 294 DK 295 (586)
T ss_pred Ch
Confidence 43
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00088 Score=74.86 Aligned_cols=123 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
+++.++||||+||||.+........ ..+....++-+-|-|+.+.+.-...++..+.+ -
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-------------------v 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-------------------V 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-------------------E
Confidence 6889999999999998877765432 34555666666677876655444443332211 1
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCCHH
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDAE 170 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~~~ 170 (901)
+...++..+.+.+..-..-.++++||||-+= |.....-++.-++.++. ..|+-.++.+|||....
T Consensus 300 ~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 300 IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred EecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 1223666666555432222368999999997 33343444444555554 34555567799987543
No 181
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=97.60 E-value=0.00013 Score=76.67 Aligned_cols=65 Identities=29% Similarity=0.308 Sum_probs=55.6
Q ss_pred CCCcHHHHHHHHHhcCCCCCceeeee-ccCC---ceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHH
Q 046397 810 GDNSKSQLQTLLTRAGYAAPSYRTKQ-LKNG---QFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQW 874 (901)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~p~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (901)
..|||+.||+++++.+...|.|.+.. .+.+ .|.++|.++|..+..--+.|||.||++||..|++-
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~ 219 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEK 219 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHh
Confidence 34999999999999999999999853 2333 49999999999996666999999999999999864
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.59 E-value=0.00034 Score=73.99 Aligned_cols=58 Identities=33% Similarity=0.424 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHH
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRI 68 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~ 68 (901)
-|....|...+.++.+++.+++.||+|||||+.+..+.++.+.. +..-+|+++-|...
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~---~~~~kIiI~RP~v~ 115 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRPVLQ 115 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeeEEEEeCCCCC
Confidence 57888999999999999999999999999999888888776543 23557888777754
No 183
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.56 E-value=0.00055 Score=82.01 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
..|.+.+.....++.++|+|++|+||||.+-..+.. +.+...+....|.++.||.-+|..+.+.+..... .++.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~-l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~---- 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA-LIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL---- 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc----
Confidence 567778888888999999999999999887665543 2222233446888899999999888887754321 1110
Q ss_pred EEecccccCCCceEEEEcHHHHHHHHhc-------CCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 92 KVRLEGMKGRDTRLLFCTTGILLRRLLV-------DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 92 ~vr~e~~~~~~t~Ii~~T~g~Llr~L~~-------~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
. .........-..|-..|+..... ....-.+++|||||+-. ++...+..+++. ..++.|+|++-
T Consensus 229 ~----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM--vd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 229 T----DEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM--VDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred c----hhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc--ccHHHHHHHHHh---cccCCEEEEec
Confidence 0 00000000112333333322111 11233568999999986 555555444443 34678888875
Q ss_pred cC
Q 046397 165 AT 166 (901)
Q Consensus 165 AT 166 (901)
-.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 44
No 184
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00079 Score=75.64 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=78.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR 101 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 101 (901)
.++.+++++||||+||||.+..+........+ ...+.++.+-+-|+.+.+....+++.++.++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~---------------- 197 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYRIGGHEQLRIFGKILGVPV---------------- 197 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecccccccHHHHHHHHHHHcCCce----------------
Confidence 35779999999999999999887765543222 1344455555567777776666665554321
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEeccCCCHHHH
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMSATLDAELF 172 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmSATl~~~~f 172 (901)
..+-+++-+...+. .+.+.++|+||++- |....+.+...+..+.... +.-.++++|||...+.+
T Consensus 198 ---~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 198 ---HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred ---EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 11222322333332 34567999999997 4444455666666554332 34568899999866543
No 185
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.56 E-value=0.00049 Score=82.77 Aligned_cols=112 Identities=23% Similarity=0.230 Sum_probs=82.4
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhh---cCCCCCCCeEEEEecchhhcccCCC
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLI---FDEPESGVRKIVLATNIAETSITIN 360 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i---~~~f~~g~~kIIvaTniaetGIdIp 360 (901)
..++.||.|+.-..-+.-+.+.|.-. .+..+-+.|....++|-.. |..+.+.....|++|-...-|+|.-
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~~~-------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQ 796 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQIR-------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQ 796 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhh-------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchh
Confidence 45789999998776666666666543 2446678888888887654 5555566789999999999999999
Q ss_pred CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC---CCCceEEcCCcchhh
Q 046397 361 DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV---QPGECYRLYPRCVYD 420 (901)
Q Consensus 361 ~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~L~s~~~~~ 420 (901)
..+-||- ||...+..... |+.-||-|. ..-..++|.+-..++
T Consensus 797 tadtvii--------fdsdwnp~~d~----------qaqdrahrigq~~evRv~rl~tv~sve 841 (1157)
T KOG0386|consen 797 TADTVII--------FDSDWNPHQDL----------QAQDRAHRIGQKKEVRVLRLITVNSVE 841 (1157)
T ss_pred hcceEEE--------ecCCCCchhHH----------HHHHHHHHhhchhheeeeeeehhhHHH
Confidence 8888876 88877776555 666666555 456778887766554
No 186
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.56 E-value=0.0032 Score=70.41 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=78.8
Q ss_pred hhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC--CeEEEEecchhhcccCC
Q 046397 282 EKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESG--VRKIVLATNIAETSITI 359 (901)
Q Consensus 282 ~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g--~~kIIvaTniaetGIdI 359 (901)
+....-+.|||-.=..-...+.-.|.+. .+....+-|+|++..|...++.|.+. .+-.+++-...+..+++
T Consensus 634 ~rd~t~KsIVFSQFTSmLDLi~~rL~ka-------GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNL 706 (791)
T KOG1002|consen 634 ERDRTAKSIVFSQFTSMLDLIEWRLGKA-------GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNL 706 (791)
T ss_pred HcccchhhhhHHHHHHHHHHHHHHhhcc-------CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeee
Confidence 3444557778765544444444445443 35577899999999999999999764 45667777777777888
Q ss_pred CCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchh
Q 046397 360 NDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVY 419 (901)
Q Consensus 360 p~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~ 419 (901)
-....|.- .||=.|.. ++| ++.-|+-|.|..+|-...+++-+..-
T Consensus 707 teASqVFm--------mDPWWNpa---Ve~----Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 707 TEASQVFM--------MDPWWNPA---VEW----QAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred chhceeEe--------ecccccHH---HHh----hhhhhHHhhcCccceeEEEeehhccH
Confidence 88888875 33332221 122 44578888888899999888765443
No 187
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0022 Score=81.26 Aligned_cols=111 Identities=23% Similarity=0.303 Sum_probs=91.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC--CeEEEEecchhhcccCCCCeEEE
Q 046397 288 AVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESG--VRKIVLATNIAETSITINDVVFV 365 (901)
Q Consensus 288 ~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g--~~kIIvaTniaetGIdIp~V~~V 365 (901)
++|||.+-.....-+...+...+ +....++|+++..+|...++.|..+ ..-++++|-.++.|+|.-..+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~-------~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG-------IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC-------CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 79999999999999999888764 3366899999999999999999875 56678888999999999999999
Q ss_pred EeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 366 IDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 366 Id~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
|. ||+..+...-. ++..|+-|.|+.++=..|++.++...+
T Consensus 786 i~--------~d~~wnp~~~~-------Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 786 IL--------FDPWWNPAVEL-------QAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EE--------eccccChHHHH-------HHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 98 77766554333 566777777888888999999988754
No 188
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.55 E-value=0.00016 Score=82.88 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQN-QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78 (901)
Q Consensus 10 i~~~q~~il~~i~~~-~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva 78 (901)
..+.|.+++....++ ...+|.||+|+|||+.+...|...... + -+|+|+.|+.+++..+.+|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-~----k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-K----KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-C----CeEEEEcCchHHHHHHHHHhc
Confidence 346788888887777 678899999999998877777665532 2 379999999999999988753
No 189
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.53 E-value=0.00053 Score=84.06 Aligned_cols=126 Identities=14% Similarity=0.208 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcC----CCCCCCeEEE
Q 046397 272 LIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFD----EPESGVRKIV 347 (901)
Q Consensus 272 li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~----~f~~g~~kII 347 (901)
.+...+..++. ..|.+|||+++....+.+++.|.... ...+ ..++..+ +..+++ .|..|...|+
T Consensus 522 ~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~------~~~l-l~Q~~~~---~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 522 EMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL------RLML-LVQGDQP---RQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc------CCcE-EEeCCch---HHHHHHHHHHHhccCCCeEE
Confidence 34444445555 34558999999999999998886421 1112 2355433 334443 3445677899
Q ss_pred EecchhhcccCCCC--eEEEEeCCCccccccccCCCc--------------cccc--cccccHhcHHHHhhhcCCCC--C
Q 046397 348 LATNIAETSITIND--VVFVIDCGKAKETSYDALNNT--------------SCLL--PSWISTVSAQQRRGRAGRVQ--P 407 (901)
Q Consensus 348 vaTniaetGIdIp~--V~~VId~G~~k~~~yd~~~~~--------------~~l~--~~~iSka~~~QR~GRAGR~~--~ 407 (901)
++|....+|||+|+ ++.||-.++| |.++.+. ..+. ..|---..+.|-+||.=|.. .
T Consensus 590 ~g~~sf~EGVD~pGd~l~~vII~kLP----F~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~ 665 (697)
T PRK11747 590 FGLQSFAEGLDLPGDYLTQVIITKIP----FAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR 665 (697)
T ss_pred EEeccccccccCCCCceEEEEEEcCC----CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce
Confidence 99999999999986 6888888887 3333211 0111 01111224778889988874 4
Q ss_pred CceEEc
Q 046397 408 GECYRL 413 (901)
Q Consensus 408 G~c~~L 413 (901)
|..+.|
T Consensus 666 G~i~il 671 (697)
T PRK11747 666 GRVTIL 671 (697)
T ss_pred EEEEEE
Confidence 655554
No 190
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0023 Score=73.78 Aligned_cols=127 Identities=22% Similarity=0.265 Sum_probs=77.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
+.+++++||||+||||.+..+....... ..+..+.++-+-|.|+.+.......+..++.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------ 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------ 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------------------
Confidence 5689999999999999988776654311 234566677777878777665555554444221
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-h-CCCceEEEeccCCCHHHHHh
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-R-RPELRLVLMSATLDAELFSS 174 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~-~~~~kiIlmSATl~~~~f~~ 174 (901)
....++.-+...+. .+.++++||||.+-. .....-....++.++. . .+.-.++++|||.....+.+
T Consensus 282 -~~~~~~~~l~~~l~---~~~~~DlVlIDt~G~-~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 282 -EVVYDPKELAKALE---QLRDCDVILIDTAGR-SQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred -EccCCHHhHHHHHH---HhCCCCEEEEeCCCC-CCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 11223444444443 244689999999973 2222233344555554 2 34345788999997665543
No 191
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0011 Score=73.74 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=79.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR 101 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 101 (901)
..+++++++||||+||||.+........ .++..+.++.+-|-|+.|...-...++..+.+ +
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvp--------v-------- 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVE--------L-------- 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCC--------E--------
Confidence 3467899999999999998887765432 23456677777788886655444443332211 0
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCCHHHHHhhh
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDAELFSSYF 176 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~~~~f~~yf 176 (901)
....+|.-+...+..-....++++||||=+- |+...+-++.-++.+.. ..|+.-++.+|||.......+.+
T Consensus 265 ---~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 ---IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred ---EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 1123466555444322234578999999997 33333334444454443 34566677889988765554443
No 192
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.36 E-value=0.0082 Score=72.72 Aligned_cols=124 Identities=23% Similarity=0.171 Sum_probs=72.9
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 6 RNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 6 ~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
+.|-.+.+--+++-.+.-+.--|.-.-||=|||..+.++..=..+. |+.+ -+|| .--=||.--++.....+ +.+
T Consensus 75 Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgV-hvVT-vNdYLA~RDae~m~~l~-~~L 148 (822)
T COG0653 75 RVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GKGV-HVVT-VNDYLARRDAEWMGPLY-EFL 148 (822)
T ss_pred HhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CCCc-EEee-ehHHhhhhCHHHHHHHH-HHc
Confidence 3445556667788888888888999999999997776665544432 3333 3444 22223322233332222 345
Q ss_pred CcEeeEEEeccc----ccCCCceEEEEcHHHH-----HHHHhcC---CCCCCceEEEEecCc
Q 046397 86 GESVGYKVRLEG----MKGRDTRLLFCTTGIL-----LRRLLVD---RNLKGVTHVIVDEVH 135 (901)
Q Consensus 86 g~~vGy~vr~e~----~~~~~t~Ii~~T~g~L-----lr~L~~~---~~l~~~~~IIIDE~H 135 (901)
|-+||..+..-. ...-.++|+|+|..-| ..-+..+ ....+..+-||||++
T Consensus 149 GlsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred CCceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 667776554432 2223589999997633 2222221 245567888888888
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.36 E-value=0.0025 Score=61.01 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHH
Q 046397 14 KNRLLTAISQ--NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 14 q~~il~~i~~--~~~viI~~~TGsGKTtq~p~~i 45 (901)
..++...+.. ++.++|.||+|+|||+.+-..+
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4456666665 7889999999999996554433
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.36 E-value=0.0016 Score=80.05 Aligned_cols=126 Identities=26% Similarity=0.242 Sum_probs=76.7
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.......|.+++..+..++.++|+|+.|+||||.+-. +++.+... +....|+++.||--+|..+.+ ..|..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~-i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e----~~g~~-- 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRA-IIELAEEL--GGLLPVGLAAPTGRAAKRLGE----VTGLT-- 391 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHHHHc--CCCceEEEEeCchHHHHHHHH----hcCCc--
Confidence 3456778899999999999999999999999987643 33333221 222467777899888765433 22211
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhc------CCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLV------DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~------~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
-.|-..++..... .......++|||||++. ++...+..+++. ..++.|+
T Consensus 392 --------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSM--vd~~~~~~Ll~~---~~~~~rl 446 (720)
T TIGR01448 392 --------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSM--MDTWLALSLLAA---LPDHARL 446 (720)
T ss_pred --------------------cccHHHHhhccCCccchhhhhccccCCEEEEecccc--CCHHHHHHHHHh---CCCCCEE
Confidence 0122222221100 01124578999999996 555555444442 2356788
Q ss_pred EEeccC
Q 046397 161 VLMSAT 166 (901)
Q Consensus 161 IlmSAT 166 (901)
|++--+
T Consensus 447 ilvGD~ 452 (720)
T TIGR01448 447 LLVGDT 452 (720)
T ss_pred EEECcc
Confidence 887544
No 195
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.35 E-value=0.042 Score=62.92 Aligned_cols=116 Identities=14% Similarity=0.156 Sum_probs=82.7
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhh--cccCCC
Q 046397 283 KERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAE--TSITIN 360 (901)
Q Consensus 283 ~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniae--tGIdIp 360 (901)
....+.+|||+|+.-+--++.+.|... ......+|--.+..+..++-..|-.|+.+|++-|-=+- .=..|.
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~-------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKE-------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhc-------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 456789999999999999999999854 23355778888888888888889999999999995332 345788
Q ss_pred CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCC----CCCCceEEcCCcchhh
Q 046397 361 DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGR----VQPGECYRLYPRCVYD 420 (901)
Q Consensus 361 ~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR----~~~G~c~~L~s~~~~~ 420 (901)
+|..||-+|+|....| |. +.....+.... .....|..||++.+.-
T Consensus 370 Gi~~viFY~~P~~p~f--------Y~-------El~n~~~~~~~~~~~~~~~~~~~lysk~D~~ 418 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQF--------YS-------ELLNMLDESSGGEVDAADATVTVLYSKYDAL 418 (442)
T ss_pred CCcEEEEECCCCChhH--------HH-------HHHhhhcccccccccccCceEEEEecHhHHH
Confidence 9999999666655443 11 22222222221 2467899999985543
No 196
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.34 E-value=0.00084 Score=75.86 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=57.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
++++|.|..|||||..+...+.+. .....+....++| +...+...+.+.++... ......
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~--~n~~l~~~l~~~l~~~~-----------------~~~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLC--GNHPLRNKLREQLAKKY-----------------NPKLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEE--ecchHHHHHHHHHhhhc-----------------ccchhh
Confidence 578999999999997666555443 1122333344444 88888887777775443 001122
Q ss_pred EEEEcHHHHHHHHh-cCCCCCCceEEEEecCcc
Q 046397 105 LLFCTTGILLRRLL-VDRNLKGVTHVIVDEVHE 136 (901)
Q Consensus 105 Ii~~T~g~Llr~L~-~~~~l~~~~~IIIDE~He 136 (901)
..+..+..+...+. .......+++|||||+|.
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHh
Confidence 33444544444333 334677899999999994
No 197
>PF05729 NACHT: NACHT domain
Probab=97.30 E-value=0.00059 Score=67.58 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=42.7
Q ss_pred EEEEecCcccCcchh-----HHHHHHHHHHhh--CCCceEEEeccCCCHHHHHhhhCCCcEEeeCCccc
Q 046397 128 HVIVDEVHERGMNED-----FLLIVLKDLLSR--RPELRLVLMSATLDAELFSSYFGGATVINIPGFTY 189 (901)
Q Consensus 128 ~IIIDE~HeR~~~~d-----~ll~~lk~ll~~--~~~~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~~ 189 (901)
+||||=++|-..... .+...+..++.. .++.++|+.|.+-....+..++.....+.+++...
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 488888887443222 255566666665 67899888888766666788887777777776543
No 198
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0059 Score=69.24 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
+.+++++||||+||||++..++..... ..|..+.++-+-+.|+.+.....+.++..+.++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~--~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~----------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL--HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----------------
Confidence 457889999999999999998875433 2455667777778899888877777665543210
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhh----CCCceEEEeccCCCHH---HHHhhh
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR----RPELRLVLMSATLDAE---LFSSYF 176 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~----~~~~kiIlmSATl~~~---~f~~yf 176 (901)
......-+...+. -.++++||||=+- |.....-.+.-+..++.. .+.-.++.+|||...+ .+.++|
T Consensus 284 --~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 284 --PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred --ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 0111233444443 1568999999765 332233344444544443 2335688899999664 334445
Q ss_pred C
Q 046397 177 G 177 (901)
Q Consensus 177 ~ 177 (901)
.
T Consensus 357 ~ 357 (432)
T PRK12724 357 E 357 (432)
T ss_pred c
Confidence 4
No 199
>PRK14974 cell division protein FtsY; Provisional
Probab=97.16 E-value=0.0037 Score=69.58 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=70.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|++|+||||.+..+... +. ..+..+.++-+-+.|..|.......+..+|.++.. ......+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~-l~--~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~---------~~~g~dp- 207 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYY-LK--KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK---------HKYGADP- 207 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH-HH--HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec---------ccCCCCH-
Confidence 57889999999999988776642 22 23344444444456676665555565655543211 0000000
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCCHH
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDAE 170 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~~~ 170 (901)
..++.+.+... ...++++||||.++. .....-++.-|+.+.. ..|+..++.++||...+
T Consensus 208 -----~~v~~~ai~~~-~~~~~DvVLIDTaGr-~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 208 -----AAVAYDAIEHA-KARGIDVVLIDTAGR-MHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred -----HHHHHHHHHHH-HhCCCCEEEEECCCc-cCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 11122222110 124678999999994 3323334444555544 45788889999998543
No 200
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0038 Score=72.51 Aligned_cols=129 Identities=20% Similarity=0.252 Sum_probs=72.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccC
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG 100 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 100 (901)
+..++++.++||||+||||.+..+...... ...+....++-+-+.|+.+......... .+ |..+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~----iL----gv~v~------ 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGR----QL----GIAVH------ 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhc----cc----CceeE------
Confidence 356789999999999999988776654332 2223345555555667766543333321 11 21111
Q ss_pred CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHHH
Q 046397 101 RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFS 173 (901)
Q Consensus 101 ~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~ 173 (901)
...+++.+...+. .+.++++||||..-. +.....+...+..+......-.+++++++.....+.
T Consensus 412 -----~a~d~~~L~~aL~---~l~~~DLVLIDTaG~-s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 -----EADSAESLLDLLE---RLRDYKLVLIDTAGM-GQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----ecCcHHHHHHHHH---HhccCCEEEecCCCc-chhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 0113344444443 245789999999973 222223333344333333445688889987655443
No 201
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.0035 Score=67.23 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=22.2
Q ss_pred HHHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 19 TAISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 19 ~~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
+.+..+.+++++||+|+|||+.+.....+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 34567789999999999999776655443
No 202
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.12 E-value=0.0019 Score=79.68 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=76.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH-----HHhCCccC-cEeeEEEecccc
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA-----SERGEKLG-ESVGYKVRLEGM 98 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva-----~e~~~~~g-~~vGy~vr~e~~ 98 (901)
.++.+.++||+|||..+...|++..-.. | ..++++++|+.+.-..+.+-+. ..+....+ ..+-+.+--...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~--~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY--G-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc--C-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 4789999999999988888777654322 2 2456666699877666554432 12222222 123222211100
Q ss_pred ---------c-------------CCCceEEEEcHHHHHHHHhc----C---------C--CCCCc-eEEEEecCcccCcc
Q 046397 99 ---------K-------------GRDTRLLFCTTGILLRRLLV----D---------R--NLKGV-THVIVDEVHERGMN 140 (901)
Q Consensus 99 ---------~-------------~~~t~Ii~~T~g~Llr~L~~----~---------~--~l~~~-~~IIIDE~HeR~~~ 140 (901)
. .....|+++|.++|-..... | | .+... -+||+||.|.- .
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~--~ 214 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF--P 214 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC--C
Confidence 0 11468999999988653221 0 1 01111 37999999973 3
Q ss_pred hhHHHHHHHHHHhhCCCceEEEeccCCCH
Q 046397 141 EDFLLIVLKDLLSRRPELRLVLMSATLDA 169 (901)
Q Consensus 141 ~d~ll~~lk~ll~~~~~~kiIlmSATl~~ 169 (901)
++- .-...+....|.. ++..|||.+.
T Consensus 215 ~~~--k~~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 215 RDN--KFYQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred cch--HHHHHHHhcCccc-EEEEeeecCC
Confidence 321 1123343444443 6669999854
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.10 E-value=0.0012 Score=67.70 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..++++||+|+||||.+..++.+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999998877654
No 204
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.08 E-value=0.0023 Score=66.60 Aligned_cols=129 Identities=18% Similarity=0.245 Sum_probs=81.5
Q ss_pred hhhhcCCCcHHHHHHHHHHHHc---CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQ---NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~---~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva 78 (901)
++...++=|.+.|.++...+.+ +++.+...-+|.|||+.+.-. +-..+..+ ..-++++| |. .|..|..+-+.
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pm-la~~LAdg-~~LvrviV--pk-~Ll~q~~~~L~ 90 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPM-LALALADG-SRLVRVIV--PK-ALLEQMRQMLR 90 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHH-HHHHHcCC-CcEEEEEc--CH-HHHHHHHHHHH
Confidence 5667788889999999999976 468899999999999765433 33343322 23344444 76 57777777776
Q ss_pred HHhCCccCcEeeEEEecccccC-----------------CCceEEEEcHHHHHHHHhc--------CC-----------C
Q 046397 79 SERGEKLGESVGYKVRLEGMKG-----------------RDTRLLFCTTGILLRRLLV--------DR-----------N 122 (901)
Q Consensus 79 ~e~~~~~g~~vGy~vr~e~~~~-----------------~~t~Ii~~T~g~Llr~L~~--------~~-----------~ 122 (901)
..+|.-++..| |...|+.... ....|+++||+.++..... .+ +
T Consensus 91 ~~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~ 169 (229)
T PF12340_consen 91 SRLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKW 169 (229)
T ss_pred HHHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66554333322 4444443321 2456999999977643221 11 2
Q ss_pred CCCceEEEEecCcc
Q 046397 123 LKGVTHVIVDEVHE 136 (901)
Q Consensus 123 l~~~~~IIIDE~He 136 (901)
+...+.=|+||+|+
T Consensus 170 l~~~~rdilDEsDe 183 (229)
T PF12340_consen 170 LDEHSRDILDESDE 183 (229)
T ss_pred HHhcCCeEeECchh
Confidence 44455568888886
No 205
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.04 E-value=0.0015 Score=70.05 Aligned_cols=126 Identities=21% Similarity=0.176 Sum_probs=76.4
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
++.+-.+.+--+++..+.=++.-|+...||=|||+.+.++..-.++ .|..+-|++ ...-||..=++.+...+. .
T Consensus 71 ~r~~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT--~NdyLA~RD~~~~~~~y~-~ 144 (266)
T PF07517_consen 71 RRTLGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNAL---QGKGVHVVT--SNDYLAKRDAEEMRPFYE-F 144 (266)
T ss_dssp HHHTS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEE--SSHHHHHHHHHHHHHHHH-H
T ss_pred HHHcCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEe--ccHHHhhccHHHHHHHHH-H
Confidence 3445555666666666654444499999999999887776654443 455666666 566677666666655443 5
Q ss_pred cCcEeeEEEeccccc----CCCceEEEEcHHHHHHH-Hhc----CC---CCCCceEEEEecCcc
Q 046397 85 LGESVGYKVRLEGMK----GRDTRLLFCTTGILLRR-LLV----DR---NLKGVTHVIVDEVHE 136 (901)
Q Consensus 85 ~g~~vGy~vr~e~~~----~~~t~Ii~~T~g~Llr~-L~~----~~---~l~~~~~IIIDE~He 136 (901)
+|-.||+........ .-..+|+|+|..-+-.. |.. ++ ....+.++|||||+.
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred hhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 677778765432211 12468999999866542 222 11 257889999999994
No 206
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.01 E-value=0.0082 Score=74.20 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=75.9
Q ss_pred CCcHHHHHHHHHHHHc-CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 8 LPAYKEKNRLLTAISQ-NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 8 LPi~~~q~~il~~i~~-~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
..+...|.+.+..+.. ++.++|.|+.|+||||.+-. +.+.+.. .| ..|+++.|+-.+|..+.+. .|..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~--~g--~~V~~~ApTg~Aa~~L~~~----~g~~-- 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA--AG--YRVIGAALSGKAAEGLQAE----SGIE-- 419 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh--CC--CeEEEEeCcHHHHHHHHhc----cCCc--
Confidence 4567888888888876 58999999999999977654 3333322 22 3577777998776655421 1110
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcC-CCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
-.|-..++..+..+ ..+...++|||||+-- +..+.+..+++... ....|+|++-=
T Consensus 420 --------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasM--v~~~~~~~Ll~~~~--~~~~kliLVGD 475 (744)
T TIGR02768 420 --------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGM--VGSRQMARVLKEAE--EAGAKVVLVGD 475 (744)
T ss_pred --------------------eeeHHHHHhhhccCcccCCCCcEEEEECccc--CCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 01333332222222 2467889999999986 55555555554432 24678887763
No 207
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.97 E-value=0.0026 Score=69.77 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCcHHHHHH----HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-CeeEEEEecchHHHHHHHHHHH
Q 046397 8 LPAYKEKNR----LLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG-AVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 8 LPi~~~q~~----il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~~~~IlvtqPrr~la~qva~rv 77 (901)
++.++.|.+ +.+.+.+++.+++.+|||+|||..++.+++......+.. ...+|+++.++..+..+....+
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 344778887 666678899999999999999999998887655432221 1236777668888766654444
No 208
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.97 E-value=0.0026 Score=69.77 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCcHHHHHH----HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-CeeEEEEecchHHHHHHHHHHH
Q 046397 8 LPAYKEKNR----LLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG-AVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 8 LPi~~~q~~----il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~~~~IlvtqPrr~la~qva~rv 77 (901)
++.++.|.+ +.+.+.+++.+++.+|||+|||..++.+++......+.. ...+|+++.++..+..+....+
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 344778887 666678899999999999999999998887655432221 1236777668888766654444
No 209
>PRK08181 transposase; Validated
Probab=96.96 E-value=0.0061 Score=65.83 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=60.8
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEeccccc
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMK 99 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~ 99 (901)
.+.+++++++.||+|+|||..+..+.. .+.. .|. .++++ +...+...+.. ...
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~-~a~~--~g~--~v~f~-~~~~L~~~l~~----a~~----------------- 154 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGL-ALIE--NGW--RVLFT-RTTDLVQKLQV----ARR----------------- 154 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHH-HHHH--cCC--ceeee-eHHHHHHHHHH----HHh-----------------
Confidence 456788999999999999965544433 3322 222 34443 33333333211 100
Q ss_pred CCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHHHhhhCC
Q 046397 100 GRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGG 178 (901)
Q Consensus 100 ~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~~ 178 (901)
. .+...+++. +.++++|||||++-.... +.....+-.++..+-+-+-+++|.-.+...+...|++
T Consensus 155 -~------~~~~~~l~~------l~~~dLLIIDDlg~~~~~-~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 155 -E------LQLESAIAK------LDKFDLLILDDLAYVTKD-QAETSVLFELISARYERRSILITANQPFGEWNRVFPD 219 (269)
T ss_pred -C------CcHHHHHHH------HhcCCEEEEeccccccCC-HHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCC
Confidence 0 122223332 456789999999843322 2222233333332211133555666667777777754
No 210
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.94 E-value=0.0024 Score=67.02 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHcCCe-EEEEcCCCChHHHHHHHHHHHHHHh---hcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQNQV-VIISGETGCGKTTQVPQFILESEIT---SVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~-viI~~~TGsGKTtq~p~~ile~~~~---~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
+.+.|.+++..+.++.. .+|.||.|+|||+.+...+...... .......+|+++.|+..++..+.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 35678888998888887 9999999999998877766654210 1122344788888999999999999966
No 211
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.92 E-value=0.0061 Score=65.78 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
..-.+|--.||.||--|+.-.|++.++. |....|.++ ..-.|-....+.+.+.-+..+...-=..........-..
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---Gr~r~vwvS-~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~ 137 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLR---GRKRAVWVS-VSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKE 137 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHc---CCCceEEEE-CChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCC
Confidence 3467788889999999999999998764 333346665 444555554444433222211100000011111112234
Q ss_pred eEEEEcHHHHHHHHhcCC-----------CC-CC-ceEEEEecCccc-Ccch-----hHHHHHHHHHHhhCCCceEEEec
Q 046397 104 RLLFCTTGILLRRLLVDR-----------NL-KG-VTHVIVDEVHER-GMNE-----DFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~-----------~l-~~-~~~IIIDE~HeR-~~~~-----d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
-|+|+|...|...-.... ++ .+ =.+||+||||.- +... .-.-.....+..+.|+.|+|.+|
T Consensus 138 GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~S 217 (303)
T PF13872_consen 138 GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYAS 217 (303)
T ss_pred CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEec
Confidence 699999998887643211 11 11 248999999952 1211 11222344556677999999999
Q ss_pred cCC
Q 046397 165 ATL 167 (901)
Q Consensus 165 ATl 167 (901)
||-
T Consensus 218 ATg 220 (303)
T PF13872_consen 218 ATG 220 (303)
T ss_pred ccc
Confidence 995
No 212
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.88 E-value=0.022 Score=67.61 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=91.5
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC---C-----ccCc
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG---E-----KLGE 87 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~---~-----~~g~ 87 (901)
++++.. +.+-.++.+|=|.|||+.+-.++.-.+.. . ..+|++|.|+...+.++.+++...+. . ..+.
T Consensus 180 ~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f--~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~ 254 (752)
T PHA03333 180 RIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF--L--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFK 254 (752)
T ss_pred HHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh--c--CCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCce
Confidence 344444 34566888999999998887766643321 2 25899999999999999888766553 1 1111
Q ss_pred Eee-----EEEecccccC---CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 88 SVG-----YKVRLEGMKG---RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 88 ~vG-----y~vr~e~~~~---~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
.+. ..+++..... ..+.|.|++.+ .+.-.-.+++++|||||+. +..+.+..++--+.. .+-+
T Consensus 255 iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars------~~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k 324 (752)
T PHA03333 255 IVTLKGTDENLEYISDPAAKEGKTTAHFLASS------PNAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTK 324 (752)
T ss_pred EEEeeCCeeEEEEecCcccccCcceeEEeccc------CCCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCc
Confidence 111 1122221111 12567776544 1111113568999999997 566666665544433 3678
Q ss_pred EEEeccCCCHHHHHhhhCC
Q 046397 160 LVLMSATLDAELFSSYFGG 178 (901)
Q Consensus 160 iIlmSATl~~~~f~~yf~~ 178 (901)
+|++|.+-+++.+..++.+
T Consensus 325 ~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 325 QIHISSPVDADSWISRVGE 343 (752)
T ss_pred eEEEeCCCCcchHHHHhhh
Confidence 9999999888877776664
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.86 E-value=0.0043 Score=70.40 Aligned_cols=67 Identities=21% Similarity=0.389 Sum_probs=45.8
Q ss_pred HHHHHHHHHHH------HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHH--HHHHHHHhC
Q 046397 11 YKEKNRLLTAI------SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSV--SERVASERG 82 (901)
Q Consensus 11 ~~~q~~il~~i------~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qv--a~rva~e~~ 82 (901)
.+.|+++++.+ .++..++|.|+-|+|||+.+-.++ +.+ +.....++++.||-++|..+ ...+...++
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~-~~~----~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~ 77 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAII-DYL----RSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG 77 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHH-HHh----ccccceEEEecchHHHHHhccCCcchHHhcC
Confidence 35677787777 788899999999999996553332 222 22334688888999999776 334434343
No 214
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.84 E-value=0.011 Score=74.34 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=77.5
Q ss_pred CCCcHHHHHHHHHHHHc-CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 7 NLPAYKEKNRLLTAISQ-NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~-~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
.+.+...|.+.+..+.. +++++|+|..|+||||.+ ..+.+.+ +. .| ..|+.+.|+-.+|..+.+ ..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~-e~-~G--~~V~~~ApTGkAA~~L~e----~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAW-EA-AG--YEVRGAALSGIAAENLEG----GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHH-HH-cC--CeEEEecCcHHHHHHHhh----cc----
Confidence 35577888888888876 568899999999999864 3444433 22 12 357777899877755432 11
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHHhcC-CCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
|.. -.|-..|+..+..+ ..+...++|||||+-- +.+..+..+++... ....|+|++-
T Consensus 411 ----Gi~--------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASM--v~~~~m~~LL~~a~--~~garvVLVG 468 (988)
T PRK13889 411 ----GIA--------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGM--VGTRQLERVLSHAA--DAGAKVVLVG 468 (988)
T ss_pred ----Ccc--------------hhhHHHHHhhhcccccccccCcEEEEECccc--CCHHHHHHHHHhhh--hCCCEEEEEC
Confidence 110 01333333222222 2466779999999985 56665555554432 3567888876
Q ss_pred cC
Q 046397 165 AT 166 (901)
Q Consensus 165 AT 166 (901)
=+
T Consensus 469 D~ 470 (988)
T PRK13889 469 DP 470 (988)
T ss_pred CH
Confidence 54
No 215
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.79 E-value=0.00092 Score=67.09 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecc--hhhcccCCCC-
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATN--IAETSITIND- 361 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTn--iaetGIdIp~- 361 (901)
.+|.+|||+|+.+..+.+.+.+....... ...++. .+ ..+...+++.|..+...|++++. ...+|||+|+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~---~~~v~~-q~---~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEK---GIPVFV-QG---SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-E---TSCEEE-ST---CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccc---cceeee-cC---cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 46999999999999999999887653211 112222 22 34667777888888899999998 9999999996
Q ss_pred -eEEEEeCCCccccccccCCC------------ccccccccccHhcHHHHhhhcCCCCCCceEEcC
Q 046397 362 -VVFVIDCGKAKETSYDALNN------------TSCLLPSWISTVSAQQRRGRAGRVQPGECYRLY 414 (901)
Q Consensus 362 -V~~VId~G~~k~~~yd~~~~------------~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~ 414 (901)
++.||-.|+|--..-|+... .......+..--...|-+||+=|.....+..++
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l 146 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIIL 146 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEE
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEE
Confidence 77898889884322222100 001111122224678999999999765555443
No 216
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.016 Score=70.62 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
++++.++||||+||||.+...........+ ++...++-+-+.|+.+...-..+++..+.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------ 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------ 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccchHHHHHHHHHHHhCCCCc------------------
Confidence 568999999999999998777654322221 1344455455667777665555555544321
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCCHHHHH
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDAELFS 173 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~~~~f~ 173 (901)
.++.++..+...+. .+.++++||||=+= |+....-+...+..+.. ..|.-.++.+|||...+.+.
T Consensus 246 -~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 -HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 11236666666554 35677999999998 44433445555666553 34556788999998776555
No 217
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.024 Score=64.89 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=77.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR 101 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 101 (901)
..++++.+.||||+||||.+........... ......++..-..|+.+.+....+++.+|.++.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--------------- 252 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRH-GADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--------------- 252 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecCCcchhHHHHHHHHHHHcCCcee---------------
Confidence 3567899999999999999877665433222 123445666666778777766666655543211
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEeccCCCHHHHHh
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMSATLDAELFSS 174 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmSATl~~~~f~~ 174 (901)
.+-++.-+...+. .+.+.++|+||.+= |.-..+.+...++.+.... +.-.++.+|||...+.+.+
T Consensus 253 ----~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ----SIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----cCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 0112222222222 36678999999974 4443344555666654433 3335678999987665443
No 218
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.70 E-value=0.033 Score=60.17 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=67.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
+.+.+.|++|+||||.+-....... ..+....++.+-+.|+.+.+.....+... |+.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~---~~~~~v~~i~~D~~ri~~~~ql~~~~~~~--------~~~~~---------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTI--------GFEVI---------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEecCCCCHHHHHHHHHHhhhc--------CceEE----------
Confidence 7899999999999987766544321 23445555555566654443322222211 22111
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCCHH
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDAE 170 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~~~ 170 (901)
...++..+.+.+..-....++++||||-+= |....+-++.-++.++. ..|+..++.+|||...+
T Consensus 135 -~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 135 -AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred -ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 112344444433211123468999999997 33323333333444443 34555677899998554
No 219
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.66 E-value=0.046 Score=60.64 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
++++.++||+|+||||.+........ ..+..+.++-.-+.|..|.+.....+..++. ++-.. . ....+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~--~~~dp 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-K--EGADP 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-C--CCCCH
Confidence 46888999999999998877654332 2344555555556677665555555444432 22111 0 00111
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-------hCCCceEEEeccCCCHH
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-------RRPELRLVLMSATLDAE 170 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-------~~~~~kiIlmSATl~~~ 170 (901)
.......+.. ....++++||||=+- |....+.++.-++.+.. ..|+-.++.++||...+
T Consensus 182 ------a~~v~~~l~~-~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 182 ------ASVAFDAIQA-AKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred ------HHHHHHHHHH-HHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 0111111110 123678999999998 44444445455554433 34566789999997554
No 220
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.012 Score=70.92 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
++......+.-..+.++||||+|. +..+..-.+||.+-...++.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 333333344456789999999996 44444555555433333455666544
No 221
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.58 E-value=0.0043 Score=68.42 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
.+.|.+++.. .++.++|.|..|||||+.+..-+...+.. +...+-.|+|+.+++.+|..+.+|+....+
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~-~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYE-GGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHT-SSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcc-ccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 3567888887 67888999999999999887766654432 324455788888999999999999977654
No 222
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.55 E-value=0.00081 Score=67.51 Aligned_cols=117 Identities=22% Similarity=0.309 Sum_probs=55.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecc-------cccC
Q 046397 28 IISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLE-------GMKG 100 (901)
Q Consensus 28 iI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e-------~~~~ 100 (901)
||+|+-|.|||+.+-+.+.... . . ...+|+||.|+...+..+.+.+...+. ..||..... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-~--~-~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-Q--K-GKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-S--------EEEE-SS--S-HHHHHCC------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H--h-cCceEEEecCCHHHHHHHHHHHHhhcc-----cccccccccccccccccccc
Confidence 6899999999988776654322 1 1 126899999999998887766633322 223322110 1112
Q ss_pred CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCC
Q 046397 101 RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLD 168 (901)
Q Consensus 101 ~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~ 168 (901)
....|.|..|..+... -...+++|||||=- +... +|+.++.. ...++||.|+.
T Consensus 72 ~~~~i~f~~Pd~l~~~------~~~~DlliVDEAAa--Ip~p----~L~~ll~~---~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAE------KPQADLLIVDEAAA--IPLP----LLKQLLRR---FPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT----------SCEEECTGGG--S-HH----HHHHHHCC---SSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhC------cCCCCEEEEechhc--CCHH----HHHHHHhh---CCEEEEEeecc
Confidence 3568889999877642 12358999999974 4443 34444433 34567888874
No 223
>PF13173 AAA_14: AAA domain
Probab=96.55 E-value=0.013 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILES 48 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~ 48 (901)
++++++|.||.|+||||.+-+++-+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999988887654
No 224
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.54 E-value=0.0059 Score=57.78 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile 47 (901)
++.++|.||+||||||.+-..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999877665543
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.023 Score=63.19 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=31.0
Q ss_pred CCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEEeccCCCHHHHHhhhC
Q 046397 123 LKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVLMSATLDAELFSSYFG 177 (901)
Q Consensus 123 l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIlmSATl~~~~f~~yf~ 177 (901)
+.++++||||+++.- ..+++....+-.++..+- .-+-+++|..++.+.+.+.|+
T Consensus 244 l~~~DLLIIDDlG~e-~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 244 LINCDLLIIDDLGTE-KITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred hccCCEEEEeccCCC-CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 456899999999832 344444455555555332 123355666666665555443
No 226
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.51 E-value=0.011 Score=72.05 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=95.0
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCe--EEEEecchhhcccCCCC
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVR--KIVLATNIAETSITIND 361 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~--kIIvaTniaetGIdIp~ 361 (901)
..+.++|||..-.....-+...|..++ +..+-+.|....++|+..++.|....+ -.|++|--...|||+-+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHg-------ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtg 1346 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHG-------YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTG 1346 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcc-------eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccccc
Confidence 346799999988777777777777664 346688999999999999999987654 56899999999999999
Q ss_pred eEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 362 VVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 362 V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
.+.||- ||...|... -+++.-|+-|.|+++.=+.|||+++..-+
T Consensus 1347 ADTVvF--------YDsDwNPtM-------DaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1347 ADTVVF--------YDSDWNPTM-------DAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred CceEEE--------ecCCCCchh-------hhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 999997 887766442 35788899999999999999999987654
No 227
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.035 Score=64.53 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=73.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.++++.+.||||+||||.+...........+ +....++.+-+-|+.+.+....+++.++..+. .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~------~--------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYRIGGHEQLRIYGKILGVPVH------A--------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccchhHHHHHHHHHHHhCCCee------c---------
Confidence 4578999999999999998887754433222 22445556667788887777777666653211 0
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEeccCCCHHHHH
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMSATLDAELFS 173 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmSATl~~~~f~ 173 (901)
.-+..-+...+. .+.+.++++||.+= |+.....+...+..+.... |.-.++.++||.....+.
T Consensus 319 ----~~~~~Dl~~aL~---~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 319 ----VKDAADLRLALS---ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred ----cCCchhHHHHHH---hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 001111111221 46677899999975 3322222222232222221 333678899998766544
No 228
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.47 E-value=0.043 Score=63.37 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=70.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|++|+||||.+..+... +. ..+..+.++.+-+.|..|......++...+.++ .... ...+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~-L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~--------~~~~---~~~d 161 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARY-FK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF--------YGDP---DNKD 161 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE--------EecC---CccC
Confidence 47889999999999988776643 22 245566677776777777665666655544321 0000 0000
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCCH
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDA 169 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~~ 169 (901)
...++.+.+.. +...++||||.+-.. ...+-++.-++.+.. ..|+.-++.++||...
T Consensus 162 ----~~~i~~~al~~---~~~~DvVIIDTAGr~-~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 162 ----AVEIAKEGLEK---FKKADVIIVDTAGRH-ALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred ----HHHHHHHHHHH---hhcCCEEEEECCCcc-cchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 11223333322 223489999999632 233334444444433 3567778889998744
No 229
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.43 E-value=0.0011 Score=80.39 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=104.0
Q ss_pred CCCcHHHHHHHHHHHHcC----------------CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHH
Q 046397 7 NLPAYKEKNRLLTAISQN----------------QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISA 70 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~----------------~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la 70 (901)
.||+-..+....+.+.+. .++++-+|||+|||..+-..+...... .+.++++++.|-..++
T Consensus 910 plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~---~p~~kvvyIap~kalv 986 (1230)
T KOG0952|consen 910 PLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY---YPGSKVVYIAPDKALV 986 (1230)
T ss_pred CCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc---CCCccEEEEcCCchhh
Confidence 456555555555555432 356788999999998888777665432 2346888889999999
Q ss_pred HHHHHHHHHHhCCccCcEeeEEE-eccccc------CCCceEEEEcHHHHHHHHh---cCCCCCCceEEEEecCcccCcc
Q 046397 71 MSVSERVASERGEKLGESVGYKV-RLEGMK------GRDTRLLFCTTGILLRRLL---VDRNLKGVTHVIVDEVHERGMN 140 (901)
Q Consensus 71 ~qva~rva~e~~~~~g~~vGy~v-r~e~~~------~~~t~Ii~~T~g~Llr~L~---~~~~l~~~~~IIIDE~HeR~~~ 140 (901)
.+-+++.....-.+ |+++ +.++.. -.+++|+++||+....... +...+.+++.+|+||.|--+-+
T Consensus 987 ker~~Dw~~r~~~~-----g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 987 KERSDDWSKRDELP-----GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred cccccchhhhcccC-----CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 88777775554433 3332 222221 1357899999987765443 3347889999999999952222
Q ss_pred hhHHHHHHHHHHh-----hCCCceEEEeccCC-CHHHHHhhhCCCcE
Q 046397 141 EDFLLIVLKDLLS-----RRPELRLVLMSATL-DAELFSSYFGGATV 181 (901)
Q Consensus 141 ~d~ll~~lk~ll~-----~~~~~kiIlmSATl-~~~~f~~yf~~~~~ 181 (901)
-...+.++..... ..+.+|++++|--+ ++..+++|++-.+.
T Consensus 1062 rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~ 1108 (1230)
T KOG0952|consen 1062 RGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM 1108 (1230)
T ss_pred CcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc
Confidence 1111111111111 12346777776554 88899999985444
No 230
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.40 E-value=0.024 Score=69.70 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCe--
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDV-- 362 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V-- 362 (901)
.+|.+|||+|+.+..+.+.+.+...... ..+..+|..+..+..+-|....++ .++|+|..+.+|||+|+=
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~------~~v~~q~~~~~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l 549 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERST------LPVLTQGEDEREELLEKFKASGEG--LILVGGGSFWEGVDFPGDAL 549 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCcc------ceeeecCCCcHHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCe
Confidence 4569999999999999999999875321 233567776666544444444333 899999999999999965
Q ss_pred EEEEeCCCcccccccc----------CC--CccccccccccHhcHHHHhhhcCCCC--CCceEEc
Q 046397 363 VFVIDCGKAKETSYDA----------LN--NTSCLLPSWISTVSAQQRRGRAGRVQ--PGECYRL 413 (901)
Q Consensus 363 ~~VId~G~~k~~~yd~----------~~--~~~~l~~~~iSka~~~QR~GRAGR~~--~G~c~~L 413 (901)
+.||-.|+|--..-|+ .. +...+...+..-....|-+||+=|.. .|.++.|
T Consensus 550 ~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 550 RLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 6677778773321111 11 11122223334457789999999984 4666666
No 231
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.37 E-value=0.016 Score=63.24 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=55.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.+++++++||||+||||.+..++....... .+..+.++-+-|.|+.+.......+...+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~---------------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVK---------------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCcee----------------
Confidence 345899999999999999887765543221 124666777777787776655555444332210
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecC
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEV 134 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~ 134 (901)
...++.-+...+. .+.++++||||.+
T Consensus 256 ---~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 ---VARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred ---ccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 1123444544443 3456899999975
No 232
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.35 E-value=0.059 Score=58.48 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=72.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
++++++|++|+||||.+........ ..+....++.+-+.|..+......+++.++..+ +.. .. ..+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~-----~~~--~~--~~d-- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV-----IKQ--KE--GAD-- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE-----EeC--CC--CCC--
Confidence 5788899999999998877765432 345556666666777777665555655554211 000 00 011
Q ss_pred EEEEcH-HHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-------hCCCceEEEeccCCCHHHH
Q 046397 105 LLFCTT-GILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-------RRPELRLVLMSATLDAELF 172 (901)
Q Consensus 105 Ii~~T~-g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-------~~~~~kiIlmSATl~~~~f 172 (901)
| ....+.+.. ....++++||||=+-. ......++.-++.+.. ..++-.++.++||...+.+
T Consensus 139 -----p~~~~~~~l~~-~~~~~~D~ViIDT~G~-~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 139 -----PAAVAFDAIQK-AKARNIDVVLIDTAGR-LQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred -----HHHHHHHHHHH-HHHCCCCEEEEeCCCC-CcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 1 122222211 1235789999999973 3333333434444432 2266778999999755433
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=96.23 E-value=0.059 Score=58.12 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=22.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
+..+.++++.||+|+|||+.+..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 567889999999999999877665443
No 234
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.18 E-value=0.013 Score=71.08 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQN-QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 10 i~~~q~~il~~i~~~-~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
+...|.+++..+..+ +.++|.||+|+|||+.+...+.... .. |. +|+|+.|+..++.++.+++..
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~--g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KR--GL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-Hc--CC--CEEEEcCcHHHHHHHHHHHHh
Confidence 567788778777765 8899999999999988877666543 22 22 788889999999999999954
No 235
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.013 Score=67.66 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=21.1
Q ss_pred HHHHHcCC---eEEEEcCCCChHHHHHHHHHH
Q 046397 18 LTAISQNQ---VVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 18 l~~i~~~~---~viI~~~TGsGKTtq~p~~il 46 (901)
..++.+++ .++++||.|+||||.+-.+.-
T Consensus 31 ~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 31 QNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445554 369999999999988766554
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.15 E-value=0.057 Score=56.68 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
.+..+++.||+|+|||+.+-.+..+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999877655443
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.13 E-value=0.083 Score=56.28 Aligned_cols=115 Identities=19% Similarity=0.334 Sum_probs=65.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
+.+++.|++|+|||+.+...+.+ +.. .+. .++++ + +..+..++...+.. ..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~-l~~--~g~--~v~~i-t----~~~l~~~l~~~~~~-----------------~~-- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE-LLL--RGK--SVLII-T----VADIMSAMKDTFSN-----------------SE-- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHh--cCC--eEEEE-E----HHHHHHHHHHHHhh-----------------cc--
Confidence 57899999999999766554433 332 233 33333 2 22233333222100 00
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEeccCCCHHHHHhhhCC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMSATLDAELFSSYFGG 178 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmSATl~~~~f~~yf~~ 178 (901)
.+...+++. +.++++|||||++.-. .+++-..++-.++..+ .+-+-+++|.-++.+.+.+++++
T Consensus 151 ---~~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 ---TSEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred ---ccHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 123334443 4578999999999532 5666555666666644 33455566666777777777753
No 238
>PRK08116 hypothetical protein; Validated
Probab=96.13 E-value=0.053 Score=58.73 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCCceEEEEecCcccCcchhHHHHHHHHHHhhC--CCceEEEeccCCCHHHHHhhh
Q 046397 123 LKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR--PELRLVLMSATLDAELFSSYF 176 (901)
Q Consensus 123 l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~--~~~kiIlmSATl~~~~f~~yf 176 (901)
+.+.++|||||++.- ..+++....+-.++..+ ....+|+.| ..+.+.+.+.+
T Consensus 176 l~~~dlLviDDlg~e-~~t~~~~~~l~~iin~r~~~~~~~IiTs-N~~~~eL~~~~ 229 (268)
T PRK08116 176 LVNADLLILDDLGAE-RDTEWAREKVYNIIDSRYRKGLPTIVTT-NLSLEELKNQY 229 (268)
T ss_pred hcCCCEEEEecccCC-CCCHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHHHH
Confidence 456789999999721 23455444455555533 234455544 45555544433
No 239
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.07 E-value=0.032 Score=60.27 Aligned_cols=22 Identities=36% Similarity=0.752 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
...++|+||+|+||||.+-.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999998776554
No 240
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.05 E-value=0.053 Score=57.15 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~il 46 (901)
.++.+++.||+|+|||+.+-.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999976654433
No 241
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.02 E-value=0.36 Score=56.97 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=65.6
Q ss_pred eEEEEecCCCCHHHHHhhcCCCC---CCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhc
Q 046397 318 VLLLTCHGSMASSEQRLIFDEPE---SGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVS 394 (901)
Q Consensus 318 ~~v~~lhs~l~~~eq~~i~~~f~---~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~ 394 (901)
+....+||.+...+|..+.+.|. .|.+-.+++-...+-|+|+-+.+++|-.++. |+|. | -.+
T Consensus 771 ~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH----WNPa-----L------EqQ 835 (901)
T KOG4439|consen 771 HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH----WNPA-----L------EQQ 835 (901)
T ss_pred eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc----cCHH-----H------HHH
Confidence 34567899999999999998884 3466778888889999999999999874443 4432 1 135
Q ss_pred HHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 395 AQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 395 ~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
|--|+=|.|...+-..||+.....-+
T Consensus 836 AcDRIYR~GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 836 ACDRIYRMGQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred HHHHHHHhcccCceEEEEEEecCcHH
Confidence 55677888888888888887765543
No 242
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.99 E-value=0.031 Score=67.21 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=27.9
Q ss_pred cCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 119 VDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 119 ~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
..+.+..+.+|||||+|. +..+..-.+++.+-...+..++|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 344567889999999996 44444444555544344556666654
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.98 E-value=0.057 Score=61.89 Aligned_cols=123 Identities=20% Similarity=0.263 Sum_probs=70.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.++.++|++|+||||.+....... . ..|..+.++.+=|.|..|....+..++..+.++ |....+ .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l--~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~~~----~--- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY--Q-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSYTE----S--- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH--H-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----EeecCC----C---
Confidence 478899999999999887766532 2 345566777777888877766555544333211 111000 0
Q ss_pred EEEEcH-HHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCC
Q 046397 105 LLFCTT-GILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLD 168 (901)
Q Consensus 105 Ii~~T~-g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~ 168 (901)
.| .+..+.+..- .-.++++||||=+- |....+-++.-++.+.. ..|+..++.++||..
T Consensus 166 ----dp~~i~~~~l~~~-~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 166 ----DPVKIASEGVEKF-KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred ----CHHHHHHHHHHHH-HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 11 1111111110 11468999999997 33333334444555443 346667888999873
No 244
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.023 Score=69.88 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=27.0
Q ss_pred CCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 120 DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 120 ~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
.+.-..+.++||||+|. +..+..-.+||.+-.-.+++++|+.
T Consensus 114 ~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 34446789999999997 5555555556544333345666664
No 245
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.91 E-value=0.097 Score=66.49 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCCcHHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 7 NLPAYKEKNRLLTAIS-QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~-~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
...+...|.+.+..+. .++.++|+|+.|+||||.+-. +.+.+ +. .| ..|+...|+--+|..+.+ +.|..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~-e~-~G--~~V~g~ApTgkAA~~L~e----~~Gi~- 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAW-EA-AG--YRVVGGALAGKAAEGLEK----EAGIQ- 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHH-HH-cC--CeEEEEcCcHHHHHHHHH----hhCCC-
Confidence 3567788888888774 578999999999999977654 33332 22 22 357777799777755532 22211
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHH-hcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRL-LVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L-~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
-.|-..++..+ .....+..-++|||||+.- +.+..+..+++.+. ....|+|++-
T Consensus 449 ---------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsM--v~~~~m~~Ll~~~~--~~garvVLVG 503 (1102)
T PRK13826 449 ---------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGM--VASRQMALFVEAVT--RAGAKLVLVG 503 (1102)
T ss_pred ---------------------eeeHHHHHhhhccCccCCCCCcEEEEECccc--CCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 11222322111 1223566778999999996 66666666665542 2467888876
Q ss_pred cC
Q 046397 165 AT 166 (901)
Q Consensus 165 AT 166 (901)
=+
T Consensus 504 D~ 505 (1102)
T PRK13826 504 DP 505 (1102)
T ss_pred CH
Confidence 54
No 246
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.90 E-value=0.065 Score=57.94 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+....+.++..+..+..+++.||+|+|||+.+-.+
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 44566788888999999999999999999777544
No 247
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.028 Score=63.78 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
++..+...|......++||||+|. +..+..-.+++.+-...+..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 333444455566788999999996 33333334444443333455666643
No 248
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.053 Score=67.40 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=27.2
Q ss_pred cCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 119 VDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 119 ~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
..+....+.++||||+|. +..+..-.+||.+-...+++.+|+.+
T Consensus 114 ~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 114 FAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344557889999999997 44554444554443333455666654
No 249
>PRK10867 signal recognition particle protein; Provisional
Probab=95.88 E-value=0.064 Score=61.81 Aligned_cols=125 Identities=19% Similarity=0.240 Sum_probs=72.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|++|+||||.+..+..... ...|..+.++.+-+.|..|.......++..+.++ |.. .. .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-----~~~---~~-~---- 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV-----FPS---GD-G---- 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE-----Eec---CC-C----
Confidence 4788999999999998887766432 1225667788888899888755555554433221 110 00 0
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLD 168 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~ 168 (901)
..|.-+...........++++||||=+=. ....+.+...+..+.. ..|+--++.++|+..
T Consensus 166 ---~dp~~i~~~a~~~a~~~~~DvVIIDTaGr-l~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 166 ---QDPVDIAKAALEEAKENGYDVVIVDTAGR-LHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCC-cccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 12333332221111235689999999873 2223334444444433 245555778888873
No 250
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.88 E-value=0.049 Score=60.95 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHH
Q 046397 13 EKNRLLTAISQNQ--VVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 13 ~q~~il~~i~~~~--~viI~~~TGsGKTtq~p~~ile 47 (901)
..+.+...+..++ .+++.||+|+|||+.+-.+.-+
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444555556665 7999999999999877665543
No 251
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.87 E-value=0.039 Score=66.48 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=29.6
Q ss_pred HHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 114 LRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 114 lr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
+..+...+.-..+.++||||+|. +..+..-.+||.+-.-.++.++|+.
T Consensus 108 i~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 108 LDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 33344445556789999999996 5555566666644333344555554
No 252
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.026 Score=66.81 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEec
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMS 164 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmS 164 (901)
++..+...+...+..++||||+|. +..+..-.+++. +... +...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~-LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKT-LEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHH-HhcCCCCceEEEEE
Confidence 445555556667889999999996 444444444443 3443 345566544
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.032 Score=62.77 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
+.+.+...+....+.+|||||+|. ++......+++.+-.-.++..+|++|.
T Consensus 129 l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 129 VGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred HHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 344444445567889999999997 555555555555533333455566653
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.83 E-value=0.015 Score=58.95 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=54.3
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEeccccc
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMK 99 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~ 99 (901)
.+.+++++++.|++|+|||..+.....+ +.. +|..+ +++ +...+. +++.....
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~-~~~--~g~~v--~f~-~~~~L~----~~l~~~~~----------------- 95 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANE-AIR--KGYSV--LFI-TASDLL----DELKQSRS----------------- 95 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHH-HHH--TT--E--EEE-EHHHHH----HHHHCCHC-----------------
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHH-hcc--CCcce--eEe-ecCcee----cccccccc-----------------
Confidence 3457789999999999999766555443 333 33333 332 333333 33311000
Q ss_pred CCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEeccCCCHHHHHhhhCC
Q 046397 100 GRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMSATLDAELFSSYFGG 178 (901)
Q Consensus 100 ~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmSATl~~~~f~~yf~~ 178 (901)
.. +.+.+++.+ .+++++||||+---. .++.....+-.++..+ .+..+|+ |.-++.+.+.+.|++
T Consensus 96 ~~-------~~~~~~~~l------~~~dlLilDDlG~~~-~~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 96 DG-------SYEELLKRL------KRVDLLILDDLGYEP-LSEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGD 160 (178)
T ss_dssp CT-------THCHHHHHH------HTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT----
T ss_pred cc-------chhhhcCcc------ccccEecccccceee-ecccccccchhhhhHhhcccCeEe-eCCCchhhHhhcccc
Confidence 00 112234433 467899999997322 2233333333333322 2223444 555788888888875
No 255
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.073 Score=63.52 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=30.2
Q ss_pred HHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 115 RRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 115 r~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
..+...+...++.++||||+|. +.....-.+||.+-.-.+++++|+.|-
T Consensus 114 e~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 114 DKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 3333344566789999999997 555555566664433334566666543
No 256
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.77 E-value=0.015 Score=67.54 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
+...|..+++++.++...+|.||+|+|||....-.+++.. +.. ...|+|..|..+++.|+|+.+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~-~~~---~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQH---AGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH-Hhc---CCceEEEcccchhHHHHHHHHHh
Confidence 5678999999999999999999999999966555555433 322 34688889999999999999943
No 257
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.72 E-value=0.1 Score=60.16 Aligned_cols=125 Identities=21% Similarity=0.283 Sum_probs=71.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|++|+||||.+..++.... ...|..+.++.+=++|..|....++.+...+.++ |.. .. ..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~--~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~-----~~~---~~-~~--- 165 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLK--KKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV-----FAL---GK-GQ--- 165 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HhCCCeEEEEeccccchHHHHHHHHHHHhcCCce-----Eec---CC-CC---
Confidence 3788999999999999887776532 1245667778887888887766666655444221 100 00 00
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLD 168 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~ 168 (901)
.|.-+...........++++||||=+-. ....+.++..+..+.. ..|+--++.++||..
T Consensus 166 ----~P~~i~~~al~~~~~~~~DvVIIDTaGr-~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 166 ----SPVEIARRALEYAKENGFDVVIVDTAGR-LQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEeCCCc-cccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 1222221111111235688999999983 3333344444544443 235556777888864
No 258
>PRK12377 putative replication protein; Provisional
Probab=95.71 E-value=0.32 Score=52.03 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
...+++.|++|+|||..+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4689999999999996554443
No 259
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.69 E-value=0.14 Score=51.47 Aligned_cols=125 Identities=21% Similarity=0.308 Sum_probs=63.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCceE
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRL 105 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 105 (901)
++++.|++|+||||....+..... ..+..+.++-.-++|..+.....+.+...+ ..+.... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~--------~~~~~~~---~~--- 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVG--------VPVFEEG---EG--- 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCC--------eEEEecC---CC---
Confidence 578999999999988766655432 224445555555666554433333222221 1111110 00
Q ss_pred EEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceEEEeccCCCHH
Q 046397 106 LFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRLVLMSATLDAE 170 (901)
Q Consensus 106 i~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~kiIlmSATl~~~ 170 (901)
..+..++........-.++++||||.......+.+. +..++.+... .++--++.++|+...+
T Consensus 65 --~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~~~ 127 (173)
T cd03115 65 --KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCChH
Confidence 112222211111112246789999999854343333 3334444432 3566677788865443
No 260
>PRK08727 hypothetical protein; Validated
Probab=95.67 E-value=0.072 Score=56.52 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.3
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
+.+++.|++|+|||..+-.
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999965543
No 261
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.64 E-value=0.034 Score=56.76 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred HHHHHHHcC---CeEEEEcCCCChHHHHHHHHHH
Q 046397 16 RLLTAISQN---QVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 16 ~il~~i~~~---~~viI~~~TGsGKTtq~p~~il 46 (901)
.+.+.+.++ +.+++.||+|+|||+.+-.++.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 355666665 4589999999999987766544
No 262
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.042 Score=64.93 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 120 DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 120 ~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
.+.-..+.++||||||. +..+..-.+++.+-...++.++|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 44556789999999996 44555555555433333455666543
No 263
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.087 Score=63.04 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 115 RRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 115 r~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
..+...|....+.++||||+|. +..+..-.+++.+-.-.++..+|+.+
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3344455678899999999996 44555545554443333355556554
No 264
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.60 E-value=0.096 Score=60.08 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
.+++|+||+|+|||+.+-.++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 679999999999997665544
No 265
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.54 Score=53.87 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=70.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchh--hcccCCCCeE
Q 046397 286 PGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIA--ETSITINDVV 363 (901)
Q Consensus 286 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTnia--etGIdIp~V~ 363 (901)
...+||+.|+.-+-.++.+.+.+..+. ...+|---+.+.-.++-+-|-.|..+|++=|--+ =+--+|.+|.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~-------F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk 624 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEIS-------FVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVK 624 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcc-------hHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheeccee
Confidence 467899999999999999998875321 1112211122222222234556788898888644 2456888999
Q ss_pred EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC-----CCceEEcCCcchh
Q 046397 364 FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-----PGECYRLYPRCVY 419 (901)
Q Consensus 364 ~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-----~G~c~~L~s~~~~ 419 (901)
-||- |-+|++..-|. +...+.+|+.-.+ .-.|-.||++.+-
T Consensus 625 ~vVf--------YqpP~~P~FYs-------Eiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 625 NVVF--------YQPPNNPHFYS-------EIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred eEEE--------ecCCCCcHHHH-------HHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9998 66666655443 5557777764332 2378888887543
No 266
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=95.54 E-value=0.0076 Score=64.96 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=64.8
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC-CccCcEeeEEEecccc
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG-EKLGESVGYKVRLEGM 98 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~-~~~g~~vGy~vr~e~~ 98 (901)
-.+.+.-.|++|||||||||-+.-|.++.+.+.-+.--|..=+ |..-+|.-+-...+..+- ..+...--|.-+||
T Consensus 269 GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi--~n~rla~~mL~Qyagyrl~drl~~y~HWadrFE-- 344 (514)
T KOG2373|consen 269 GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEI--PNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFE-- 344 (514)
T ss_pred cCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeec--chHHHHHHHHHHHccCchHhhhhhhhHHHHHHh--
Confidence 3345668999999999999999999998775432222233333 443333332222211100 00000001222332
Q ss_pred cCCCceEEEEcH------HHHHHHHhcCCCCCCceEEEEecCc----------ccCcchhHHHHHHHHHH
Q 046397 99 KGRDTRLLFCTT------GILLRRLLVDRNLKGVTHVIVDEVH----------ERGMNEDFLLIVLKDLL 152 (901)
Q Consensus 99 ~~~~t~Ii~~T~------g~Llr~L~~~~~l~~~~~IIIDE~H----------eR~~~~d~ll~~lk~ll 152 (901)
...+.|+|- ...++.+.......++.|||||..+ .|-...|.+.++++.+.
T Consensus 345 ---rlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fA 411 (514)
T KOG2373|consen 345 ---RLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFA 411 (514)
T ss_pred ---ccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHHHHh
Confidence 233555552 2334444444466778999999887 23334455555555543
No 267
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.057 Score=64.90 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
++......+....+.++||||+|. +..+..-.+++.+-.-.+..++|+.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 334444455667899999999996 45555544454433323345666544
No 268
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.055 Score=63.23 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 114 LRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 114 lr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
+......|....+.++||||+|. +..+.+-.+++.+-.-.++.++|+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 33444456678899999999996 44444444455443333445555543
No 269
>PRK06893 DNA replication initiation factor; Validated
Probab=95.48 E-value=0.15 Score=54.03 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCceEEEEecCcccCcchh---HHHHHHHHHHhhCCCceEEEeccCCCHHH
Q 046397 123 LKGVTHVIVDEVHERGMNED---FLLIVLKDLLSRRPELRLVLMSATLDAEL 171 (901)
Q Consensus 123 l~~~~~IIIDE~HeR~~~~d---~ll~~lk~ll~~~~~~kiIlmSATl~~~~ 171 (901)
+.+.++|||||+|.-....+ .+..++..... ....+|++|++..+..
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 35678999999995322222 33333443322 2335678888875543
No 270
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.47 E-value=0.15 Score=62.42 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=16.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+++|.|+||+|||+.+-.. ++.+
T Consensus 783 vLYIyG~PGTGKTATVK~V-LrEL 805 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSV-IQLL 805 (1164)
T ss_pred eEEEECCCCCCHHHHHHHH-HHHH
Confidence 4579999999999665544 4443
No 271
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.034 Score=65.61 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 116 RLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 116 ~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
.+...+......+|||||+|. +..+.+..+++.+-...+...+|+.
T Consensus 107 ~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 107 KVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 334445677889999999995 3444454555544333334444444
No 272
>PRK06921 hypothetical protein; Provisional
Probab=95.39 E-value=0.1 Score=56.41 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEI 50 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~ 50 (901)
.++.+++.|+||+|||..+.. |...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~a-ia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTA-AANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHH-HHHHHh
Confidence 467899999999999966543 344443
No 273
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.063 Score=64.18 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=28.6
Q ss_pred ECcEEEEEeChhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046397 718 MGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLN 755 (901)
Q Consensus 718 ~d~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~p~~~ 755 (901)
++|--.|..+.+.-.++.+|+..|...|....-+-.+.
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (702)
T PRK14960 611 IGGNTVFHIPQEYENMLTQLQQALIEALKQQWPNTQFT 648 (702)
T ss_pred ccceEEEecHHHHHHHHHHHHHHHHHHHHhhCCCCeeE
Confidence 46777888888888888888888888887766554443
No 274
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.37 E-value=0.027 Score=57.18 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=30.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
.++|.||+|+|||+...+++.+.+ ..|..+.++-+..+ ..++.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~---~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES---PEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC---HHHHHHHH
Confidence 378999999999999999988765 23445555544333 44444443
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.35 E-value=0.12 Score=50.43 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+++|.|++|+|||+.+.+++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999988877766543
No 276
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.13 Score=58.13 Aligned_cols=105 Identities=27% Similarity=0.260 Sum_probs=54.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCC-eeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGA-VCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~-~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
.+++|.|+||+||| +...++.+.......+. .+.|=|. .----.++...+...++. + +.+
T Consensus 43 ~n~~iyG~~GTGKT-~~~~~v~~~l~~~~~~~~~~yINc~--~~~t~~~i~~~i~~~~~~---------~-------p~~ 103 (366)
T COG1474 43 SNIIIYGPTGTGKT-ATVKFVMEELEESSANVEVVYINCL--ELRTPYQVLSKILNKLGK---------V-------PLT 103 (366)
T ss_pred ccEEEECCCCCCHh-HHHHHHHHHHHhhhccCceEEEeee--eCCCHHHHHHHHHHHcCC---------C-------CCC
Confidence 46899999999998 66677777776543333 2333331 111223444455444430 0 000
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCc-chhHHHHHHHH
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGM-NEDFLLIVLKD 150 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~-~~d~ll~~lk~ 150 (901)
-..+.+.+-.....-......-+||+||++...- ..+.+..+++.
T Consensus 104 --g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~ 149 (366)
T COG1474 104 --GDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA 149 (366)
T ss_pred --CCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh
Confidence 1122333333222223456677899999995311 11455555543
No 277
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.25 E-value=0.079 Score=52.82 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=62.9
Q ss_pred HHHHHHcC---CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEE
Q 046397 17 LLTAISQN---QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKV 93 (901)
Q Consensus 17 il~~i~~~---~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~v 93 (901)
+...+.++ +.+++.||.|+||++.+..++..-. ....... .| -.-..+. ++.. + .-.+.. -+
T Consensus 9 L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll-~~~~~~~---~c--~~c~~c~----~~~~--~-~~~d~~--~~ 73 (162)
T PF13177_consen 9 LKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL-CSNPNED---PC--GECRSCR----RIEE--G-NHPDFI--II 73 (162)
T ss_dssp HHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC--TT-CTT-------SSSHHHH----HHHT--T--CTTEE--EE
T ss_pred HHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc-CCCCCCC---CC--CCCHHHH----HHHh--c-cCcceE--EE
Confidence 34444444 4689999999999988877765432 2221111 11 1111222 1110 0 000110 01
Q ss_pred ecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 94 RLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 94 r~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
..+ .....|.+-....+...+...+.-..+.++||||+|. +..+..-++||.+-.-.++..+|++|-.+
T Consensus 74 ~~~---~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 74 KPD---KKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp ETT---TSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred ecc---cccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 000 0111233323333444444455557899999999997 56666666666554444466677666554
No 278
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.24 E-value=0.11 Score=62.54 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
++..+...+....+.+|||||+|. +..+..-.+++.+-.-.++..+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 444455566778899999999997 44444444454433334456677654
No 279
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.22 E-value=0.13 Score=58.36 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=18.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
..++|.||+|+|||+.+- .+++.+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 679999999999996654 444433
No 280
>PRK05642 DNA replication initiation factor; Validated
Probab=95.21 E-value=0.13 Score=54.56 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=14.5
Q ss_pred CeEEEEcCCCChHHHHH
Q 046397 25 QVVIISGETGCGKTTQV 41 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~ 41 (901)
..++|.|++|+|||..+
T Consensus 46 ~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999653
No 281
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.17 E-value=0.16 Score=59.50 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=22.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
+.+++.||+|+|||+.+ +.+...+.+.. ....++++
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~--~~~~v~yi 184 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN--PNAKVVYV 184 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC--CCCeEEEE
Confidence 46899999999999655 44444443322 23455554
No 282
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.15 Score=60.77 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 114 LRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 114 lr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
+......|...++.++||||+|. +..+..-.+++.+-...++..+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 33344456667889999999996 34444444555443333455666654
No 283
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.15 E-value=0.11 Score=59.73 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
..+.++.++..++++++.|++|+|||+.+-...
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 446788888899999999999999998775443
No 284
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.3 Score=52.52 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=66.0
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEec
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRL 95 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~ 95 (901)
.+.+.+.++.++++.|++|+|||..+.....+.+ . .|. .++++ +...++..+..-. .. |
T Consensus 97 ~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~--sv~f~-~~~el~~~Lk~~~----~~--~--------- 155 (254)
T COG1484 97 SLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--AGI--SVLFI-TAPDLLSKLKAAF----DE--G--------- 155 (254)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCC--eEEEE-EHHHHHHHHHHHH----hc--C---------
Confidence 3444556788999999999999966655444433 2 233 33333 5555555554433 11 0
Q ss_pred ccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCc---chhHHHHHHHHHHhhCCCceEEEeccCCCHHHH
Q 046397 96 EGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGM---NEDFLLIVLKDLLSRRPELRLVLMSATLDAELF 172 (901)
Q Consensus 96 e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~---~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f 172 (901)
...+.|.+ .+.+++++||||+=-... ..+.+..++......+ .. ++|.-.+.+.+
T Consensus 156 ------------~~~~~l~~------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~ 213 (254)
T COG1484 156 ------------RLEEKLLR------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEW 213 (254)
T ss_pred ------------chHHHHHH------HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHH
Confidence 01233444 256789999999983222 2244444444333332 22 55555566666
Q ss_pred HhhhC
Q 046397 173 SSYFG 177 (901)
Q Consensus 173 ~~yf~ 177 (901)
...|+
T Consensus 214 ~~~~~ 218 (254)
T COG1484 214 DELFG 218 (254)
T ss_pred Hhhcc
Confidence 66655
No 285
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.14 E-value=0.092 Score=64.70 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHHHHHHc-----CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHH
Q 046397 16 RLLTAISQ-----NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVS 74 (901)
Q Consensus 16 ~il~~i~~-----~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva 74 (901)
+|.+++.+ ++.++|.|+||+|||..++.+.+..+...+ .+|||...|..|-.|+.
T Consensus 36 ~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~----k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 36 EVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK----KKLVISTATVALQEQLV 95 (697)
T ss_pred HHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC----CeEEEEcCCHHHHHHHH
Confidence 34445555 478999999999999999999876554322 26788779999987775
No 286
>PHA02533 17 large terminase protein; Provisional
Probab=95.10 E-value=0.49 Score=56.24 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=93.3
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc--
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK-- 84 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~-- 84 (901)
.+++..+|.+++..+..++-.++.-+=..|||+.+..+++..+... . ...++++.|++..|..+.+++.......
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~--~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-K--DKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-C--CCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 5778999999999987778888999999999999887766555432 2 2378888899999999888886433210
Q ss_pred c-C-cEee---EEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 85 L-G-ESVG---YKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 85 ~-g-~~vG---y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
+ . ..+. ..+.+ ...+.|.+.|..- +.. .=.+.+++|+||+|...-..+++.. +...+......+
T Consensus 134 l~~~~i~~~~~~~I~l----~NGS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r 202 (534)
T PHA02533 134 FLQPGIVEWNKGSIEL----ENGSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSK 202 (534)
T ss_pred HhhcceeecCccEEEe----CCCCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCce
Confidence 0 0 0000 01212 2345565555421 000 1123567999999963222233333 344444444456
Q ss_pred EEEeccCCCHHHHHhhhC
Q 046397 160 LVLMSATLDAELFSSYFG 177 (901)
Q Consensus 160 iIlmSATl~~~~f~~yf~ 177 (901)
++..|..-....|.+.+.
T Consensus 203 ~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 203 IIITSTPNGLNHFYDIWT 220 (534)
T ss_pred EEEEECCCchhhHHHHHH
Confidence 666666643333555443
No 287
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.09 E-value=0.045 Score=58.75 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=64.7
Q ss_pred HHHHHHHHHHH------cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 12 KEKNRLLTAIS------QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 12 ~~q~~il~~i~------~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
..|+.++.++. ...+.+..||.|+|||..+..+..+.. ...-. |-|++-. -.+.|+|..+
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~--~~~~~--------~~rvl~l----naSderGisv 104 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN--CEQLF--------PCRVLEL----NASDERGISV 104 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc--Ccccc--------ccchhhh----cccccccccc
Confidence 34555555553 356899999999999988877654422 11112 3333311 1234444331
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
+ -+... .-..+.+... ..++ ....+.+||+||||- +.+|....+.|-+-......++|+..
T Consensus 105 v--------r~Kik-~fakl~~~~~-------~~~~~~~~~fKiiIlDEcds--mtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 105 V--------REKIK-NFAKLTVLLK-------RSDGYPCPPFKIIILDECDS--MTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred h--------hhhhc-CHHHHhhccc-------cccCCCCCcceEEEEechhh--hhHHHHHHHHHHHhccccceEEEEEc
Confidence 1 11111 0011111111 1222 566789999999997 55665555444433334466777765
Q ss_pred cCC
Q 046397 165 ATL 167 (901)
Q Consensus 165 ATl 167 (901)
--+
T Consensus 167 nyl 169 (346)
T KOG0989|consen 167 NYL 169 (346)
T ss_pred CCh
Confidence 543
No 288
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.08 E-value=0.22 Score=67.83 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 7 NLPAYKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
.+++..-|.+.+..+..+ ++.+|.|+.|+||||.+-.. .+.+ +. .| ..|++..|+.-+|..+.+.. |..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l-~~~~-~~-~G--~~V~~lAPTgrAA~~L~e~~----g~~ 497 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLL-LHLA-SE-QG--YEIQIITAGSLSAQELRQKI----PRL 497 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHH-HHHH-Hh-cC--CeEEEEeCCHHHHHHHHHHh----cch
Confidence 456777888888887654 89999999999999765443 3332 21 22 35777779988776665543 211
Q ss_pred cCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 85 LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 85 ~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
-. ++. ++-..... .....|...++ ..+..+..-++|||||+-. +.+..+..+++.. ...+.|+|++-
T Consensus 498 A~-Ti~---~~l~~l~~--~~~~~tv~~fl---~~~~~l~~~~vlIVDEAsM--l~~~~~~~Ll~~a--~~~garvVlvG 564 (1960)
T TIGR02760 498 AS-TFI---TWVKNLFN--DDQDHTVQGLL---DKSSPFSNKDIFVVDEANK--LSNNELLKLIDKA--EQHNSKLILLN 564 (1960)
T ss_pred hh-hHH---HHHHhhcc--cccchhHHHhh---cccCCCCCCCEEEEECCCC--CCHHHHHHHHHHH--hhcCCEEEEEc
Confidence 00 000 00000000 01122333333 2233566789999999996 5666555555543 23568888886
Q ss_pred cC
Q 046397 165 AT 166 (901)
Q Consensus 165 AT 166 (901)
=+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 55
No 289
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.04 E-value=0.072 Score=56.37 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=29.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEec
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQ 64 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvtq 64 (901)
+..+..++|.|++||||||...+++...+ . ++..+..+.+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~--~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-Q--NGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-h--CCCcEEEEeCC
Confidence 45678999999999999999888887643 2 34444444443
No 290
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.13 Score=60.18 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=20.6
Q ss_pred HHHHHcCC---eEEEEcCCCChHHHHHHHHHH
Q 046397 18 LTAISQNQ---VVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 18 l~~i~~~~---~viI~~~TGsGKTtq~p~~il 46 (901)
...+.+++ .++++||+|+||||.+-.+.-
T Consensus 27 ~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 27 INALKKNSISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33444543 369999999999988766543
No 291
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.04 E-value=0.17 Score=55.69 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 8 LPAYKEKNRLLTAISQNQ--VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~--~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
-|-..+|.-.++++.... -|.+.|.-|||||..+...-++..++.+ ..-+|+|+-|+
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~ 285 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPT 285 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCC
Confidence 467788999999998654 5788999999999888887777766543 45589998787
No 292
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.24 Score=56.06 Aligned_cols=63 Identities=24% Similarity=0.153 Sum_probs=38.1
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
..|.|-..--+.+.+...+......+|||||+|. ++......+++.+-.-.++..+|++|...
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 3454444334445555455667889999999997 55666666665553333345566665554
No 293
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=94.99 E-value=0.075 Score=57.55 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHh
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIM 876 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (901)
-+.||=+.||++.++.+-+.|.|... ..+..+ |.-.|-+.+..=+|. +.+||+|-+|||.+-|+-|-
T Consensus 140 ~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~~Gk-G~sKKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 140 QVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTEEGK-GPSKKIAKRNAAEAMLESLG 210 (339)
T ss_pred cccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceeeecC-CchHHHHHHHHHHHHHHHhc
Confidence 36799999999999999999999994 455555 999999999999997 67899999999998888775
No 294
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.97 E-value=0.25 Score=54.81 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=22.9
Q ss_pred CCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEEec
Q 046397 124 KGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVLMS 164 (901)
Q Consensus 124 ~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIlmS 164 (901)
.+.++|||||+|.- ...-....++.++...+ +.++|+.+
T Consensus 99 ~~~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 45789999999963 12223345566555544 45555543
No 295
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=94.94 E-value=0.057 Score=62.44 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCC
Q 046397 810 GDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGI 879 (901)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (901)
+.||-++|-+++. .|.|.- ...++++ |..+|+++|..|-|- +++||+|--+||++|++.|-+..
T Consensus 89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 7799999999988 555554 3444444 999999999999999 99999999999999999998853
No 296
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.2 Score=58.08 Aligned_cols=138 Identities=22% Similarity=0.203 Sum_probs=71.9
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHH---HHH--HHhCCc---cCcEee-EEEeccccc
Q 046397 29 ISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSE---RVA--SERGEK---LGESVG-YKVRLEGMK 99 (901)
Q Consensus 29 I~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~---rva--~e~~~~---~g~~vG-y~vr~e~~~ 99 (901)
..+.||||||....-.||+.. . +|-+--+.++--.-++-...-. .++ -.+.+. .+..+. -.|..-+..
T Consensus 2 f~matgsgkt~~ma~lil~~y-~--kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECY-K--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred cccccCCChhhHHHHHHHHHH-H--hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 357899999988888888754 2 3333334443333333211110 000 001111 111111 111111223
Q ss_pred CCCceEEEEcHHHHHHHHhcCC-------CCCCceE-EEEecCcccCcch-----h------HHHHHHHHHHhhCCCceE
Q 046397 100 GRDTRLLFCTTGILLRRLLVDR-------NLKGVTH-VIVDEVHERGMNE-----D------FLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 100 ~~~t~Ii~~T~g~Llr~L~~~~-------~l~~~~~-IIIDE~HeR~~~~-----d------~ll~~lk~ll~~~~~~ki 160 (901)
+....|.|+|.+.|...+.+.. .+.+..+ .+-||+|+-...+ | -+...+.-.+...++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 4567899999999887765533 3444444 5679999632211 1 122334444556777778
Q ss_pred EEeccCCCH
Q 046397 161 VLMSATLDA 169 (901)
Q Consensus 161 IlmSATl~~ 169 (901)
+..|||.+.
T Consensus 159 lef~at~~k 167 (812)
T COG3421 159 LEFSATIPK 167 (812)
T ss_pred ehhhhcCCc
Confidence 899999863
No 297
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.94 E-value=0.063 Score=56.14 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=22.9
Q ss_pred HHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHH
Q 046397 14 KNRLLTAISQ--NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 14 q~~il~~i~~--~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+++.+.+.+ ++.++|.||.|+|||+.+-.++
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~ 41 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLLKEFI 41 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHH
Confidence 3455555655 5899999999999997544433
No 298
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.92 E-value=0.18 Score=54.83 Aligned_cols=123 Identities=21% Similarity=0.225 Sum_probs=66.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcC-CCee-EEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVR-GAVC-SIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~-~~~~-~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.+++|+|+||.|||+.+-.|.-.+...... +..+ .+++-.|...-....+..+-..+|.+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------------- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------------- 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--------------
Confidence 589999999999999887777654322111 1122 334444776666777777777776553211
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcc--cC--cchhHHHHHHHHHHhhCCCceEEEeccCCC
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHE--RG--MNEDFLLIVLKDLLSRRPELRLVLMSATLD 168 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~He--R~--~~~d~ll~~lk~ll~~~~~~kiIlmSATl~ 168 (901)
.++--.+. ..++.|. --++.++||||+|. .| ...--.+..+|.+-+.. .+-+|+. .|.+
T Consensus 128 ~~~~~~~~-~~~~llr----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~v-Gt~~ 190 (302)
T PF05621_consen 128 DRVAKLEQ-QVLRLLR----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGV-GTRE 190 (302)
T ss_pred CCHHHHHH-HHHHHHH----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEe-ccHH
Confidence 00100011 1112221 13578999999995 12 22334556666653322 3445544 5543
No 299
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.89 E-value=0.24 Score=58.91 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=88.2
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc-CcEe----e
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL-GESV----G 90 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~-g~~v----G 90 (901)
++++.. +.+-.++..|==.|||..+. +++-.++..-. ..+|+++.|++..+..+.+++........ +..+ |
T Consensus 247 ~~~~~f-kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~--Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 247 AAVRHF-RQRATVFLVPRRHGKTWFLV-PLIALALATFR--GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred HHHHHh-hccceEEEecccCCchhhHH-HHHHHHHHhCC--CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 344443 34567888899999997665 33333332212 35899999999999999988876432111 1111 1
Q ss_pred --EEEecccccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 91 --YKVRLEGMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 91 --y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
+.+.+.+ ...+.|.|.+. .++. -=.+++++|||||+. +..+.+..++--+... +.++|.+|.|
T Consensus 323 e~I~i~f~n--G~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~ 389 (738)
T PHA03368 323 ETISFSFPD--GSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSST 389 (738)
T ss_pred cEEEEEecC--CCccEEEEEec-------cCCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecC
Confidence 1112221 12246777643 1111 123689999999998 6777777777443333 8899999999
Q ss_pred CCHHHHHhhhC
Q 046397 167 LDAELFSSYFG 177 (901)
Q Consensus 167 l~~~~f~~yf~ 177 (901)
-+.+....|+.
T Consensus 390 Ns~~~sTSFL~ 400 (738)
T PHA03368 390 NTGKASTSFLY 400 (738)
T ss_pred CCCccchHHHH
Confidence 76655555543
No 300
>PHA02244 ATPase-like protein
Probab=94.88 E-value=0.11 Score=58.08 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.....+...+..+..+++.||||||||+.+-.+.
T Consensus 107 ~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA 140 (383)
T PHA02244 107 YETADIAKIVNANIPVFLKGGAGSGKNHIAEQIA 140 (383)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 3556677788889999999999999997665443
No 301
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.87 E-value=0.53 Score=52.03 Aligned_cols=113 Identities=13% Similarity=0.221 Sum_probs=59.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.++.+++.|++|+|||..+.....+ +.. +|..+ .++..|. ++..+...+ +. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~-l~~--~g~~v-~~~~~~~--l~~~lk~~~----~~------------------~ 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANE-LAK--KGVSS-TLLHFPE--FIRELKNSI----SD------------------G 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-HHH--cCCCE-EEEEHHH--HHHHHHHHH----hc------------------C
Confidence 3568999999999999666544433 332 33333 3333342 333322221 10 0
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHH-HHHHHHHhhC-CCceEEEeccCCCHHHHHhhh
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLL-IVLKDLLSRR-PELRLVLMSATLDAELFSSYF 176 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll-~~lk~ll~~~-~~~kiIlmSATl~~~~f~~yf 176 (901)
+...+++ .+.+++++||||+.--. .+++.. .++..++..+ .+-+-.++|.-++.+.+.++|
T Consensus 207 ------~~~~~l~------~l~~~dlLiIDDiG~e~-~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ------SVKEKID------AVKEAPVLMLDDIGAEQ-MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ------cHHHHHH------HhcCCCEEEEecCCCcc-ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 1122333 24678999999998322 233322 3444444433 233445566666777777766
No 302
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.86 E-value=0.077 Score=62.56 Aligned_cols=148 Identities=20% Similarity=0.193 Sum_probs=86.5
Q ss_pred HHHHHHHHHHc---------CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 13 EKNRLLTAISQ---------NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 13 ~q~~il~~i~~---------~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
+|.-|+..+.. .+.+++.-+=|-|||+.+....+..++..+ .....|+++.+++.-|..+.+.+......
T Consensus 2 wQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 2 WQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred cHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 45566666541 245788889999999887766555544322 22357999999999999998877665432
Q ss_pred c--cCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCc
Q 046397 84 K--LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPEL 158 (901)
Q Consensus 84 ~--~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ 158 (901)
. +....+..+ .......|.+-.++..++.+.+++ .=.+.+++|+||+|+ ...+-+...++.-+..+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~--~~~~~~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHA--HKDDELYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCC--CCCHHHHHHHHhhhccCCCc
Confidence 1 111111111 001122344333343433333333 122468999999997 34444666677777777777
Q ss_pred eEEE-eccCC
Q 046397 159 RLVL-MSATL 167 (901)
Q Consensus 159 kiIl-mSATl 167 (901)
.++. .||..
T Consensus 155 l~~~ISTag~ 164 (477)
T PF03354_consen 155 LIIIISTAGD 164 (477)
T ss_pred eEEEEeCCCC
Confidence 6554 45544
No 303
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.86 E-value=0.091 Score=61.87 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~il 46 (901)
+.++++||.|+||||.+-.+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999988766543
No 304
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.85 E-value=0.1 Score=62.49 Aligned_cols=30 Identities=37% Similarity=0.457 Sum_probs=21.4
Q ss_pred HHHHHHcC---CeEEEEcCCCChHHHHHHHHHH
Q 046397 17 LLTAISQN---QVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 17 il~~i~~~---~~viI~~~TGsGKTtq~p~~il 46 (901)
+..++.++ +.++++||.|+||||.+-.+.-
T Consensus 28 L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 28 LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34445554 3588999999999988766553
No 305
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.091 Score=60.40 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHHHHHHcCC---eEEEEcCCCChHHHHHHHHHH
Q 046397 16 RLLTAISQNQ---VVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 16 ~il~~i~~~~---~viI~~~TGsGKTtq~p~~il 46 (901)
.+..++.+++ .++++||.|+||||.+-.+.-
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHH
Confidence 3444455553 488999999999988866643
No 306
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.82 E-value=0.29 Score=56.45 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=23.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
+.+++.|++|+|||..+ +.+...+.+.. ....++++
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~--~~~~v~yi 172 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN--PNAKVVYV 172 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC--CCCcEEEE
Confidence 46899999999999665 55555554332 22345554
No 307
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.78 E-value=0.12 Score=61.68 Aligned_cols=30 Identities=40% Similarity=0.525 Sum_probs=21.2
Q ss_pred HHHHHHHcC---CeEEEEcCCCChHHHHHHHHH
Q 046397 16 RLLTAISQN---QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 16 ~il~~i~~~---~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..++.++ +.++++||.|+||||.+-.+.
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 344445444 457899999999998776554
No 308
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.78 E-value=0.22 Score=52.30 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=62.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
+.++|.||+|+|||. ..+.+.....+... ..+|+++ +-..........+..
T Consensus 35 ~~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~--~~~v~y~-~~~~f~~~~~~~~~~------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH-LLQAIANEAQKQHP--GKRVVYL-SAEEFIREFADALRD------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHH-HHHHHHHHHHHHCT--TS-EEEE-EHHHHHHHHHHHHHT-------------------------
T ss_pred CceEEECCCCCCHHH-HHHHHHHHHHhccc--cccceee-cHHHHHHHHHHHHHc-------------------------
Confidence 358999999999996 44555555443322 3356554 333333333333310
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcc---hhHHHHHHHHHHhhCCCceEEEeccCCCHH------HHHhh
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMN---EDFLLIVLKDLLSRRPELRLVLMSATLDAE------LFSSY 175 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~---~d~ll~~lk~ll~~~~~~kiIlmSATl~~~------~f~~y 175 (901)
.....+... +..+++++||++|.-.-. .+.+..++..+... +-++|+.|...+.+ .+.+-
T Consensus 86 ---~~~~~~~~~------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~SR 154 (219)
T PF00308_consen 86 ---GEIEEFKDR------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRSR 154 (219)
T ss_dssp ---TSHHHHHHH------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHHH
T ss_pred ---ccchhhhhh------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhhh
Confidence 011233332 457899999999963222 23455555554443 34666666554322 34444
Q ss_pred hCCCcEEeeC
Q 046397 176 FGGATVINIP 185 (901)
Q Consensus 176 f~~~~~i~i~ 185 (901)
|....++.+.
T Consensus 155 l~~Gl~~~l~ 164 (219)
T PF00308_consen 155 LSWGLVVELQ 164 (219)
T ss_dssp HHCSEEEEE-
T ss_pred HhhcchhhcC
Confidence 4444444443
No 309
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.75 E-value=0.25 Score=59.57 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
+...+...|....+.++||||+|. +..+..-.+++.+-.-.++..+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 444444556778899999999996 34443444444333323345555544
No 310
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.078 Score=59.13 Aligned_cols=134 Identities=17% Similarity=0.282 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHHHcCC----eEEEEcCCCChHHHHHHHHHHHHHHhhcC--CCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 9 PAYKEKNRLLTAISQNQ----VVIISGETGCGKTTQVPQFILESEITSVR--GAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~----~viI~~~TGsGKTtq~p~~ile~~~~~~~--~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
++|+++....+.+...+ -.+++||.|+|||+.+-.+.-. ++.... +..|- .-..+ ..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~-llC~~~~~~~~Cg------~C~sC----~~~~~--- 68 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAA-LLCEAPQGGGACG------SCKGC----QLLRA--- 68 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHH-HcCCCCCCCCCCC------CCHHH----HHHhc---
Confidence 35667777777775433 5889999999999877665432 222111 11110 10111 11100
Q ss_pred CccCcEee-EEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceE
Q 046397 83 EKLGESVG-YKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRL 160 (901)
Q Consensus 83 ~~~g~~vG-y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~ki 160 (901)
|..-. +.+.-+. ....|-+-..--+...+...+...+..++||||+|. ++.+..-.+||.+ ...| +..+
T Consensus 69 ---g~HPD~~~i~~~~---~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~--m~~~aaNaLLK~L-EEPp~~~~f 139 (328)
T PRK05707 69 ---GSHPDNFVLEPEE---ADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEA--MNRNAANALLKSL-EEPSGDTVL 139 (328)
T ss_pred ---CCCCCEEEEeccC---CCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhh--CCHHHHHHHHHHH-hCCCCCeEE
Confidence 00000 0111010 011222222223444455566678899999999997 5555556666643 4443 3445
Q ss_pred EEecc
Q 046397 161 VLMSA 165 (901)
Q Consensus 161 IlmSA 165 (901)
|+.|.
T Consensus 140 iL~t~ 144 (328)
T PRK05707 140 LLISH 144 (328)
T ss_pred EEEEC
Confidence 54443
No 311
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.68 E-value=0.18 Score=59.20 Aligned_cols=115 Identities=23% Similarity=0.234 Sum_probs=92.9
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCe-EEEEecchhhcccCCCCe
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVR-KIVLATNIAETSITINDV 362 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~-kIIvaTniaetGIdIp~V 362 (901)
..+.++|+|+.-...+.-+.++|...+ +..+.+.|+....+|+.+...|....+ -.+++|-..+-||++...
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~-------Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAA 1114 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRG-------YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAA 1114 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhc-------cceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccccc
Confidence 456799999998888888888887543 446789999999999999999976544 568999999999999999
Q ss_pred EEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 363 VFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 363 ~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
+.||- ||...+.+.- .++.-|+-|-|.++.-.+|+|.++..-+
T Consensus 1115 DTViF--------YdSDWNPT~D-------~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1115 DTVIF--------YDSDWNPTAD-------QQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ceEEE--------ecCCCCcchh-------hHHHHHHHhccCccceeeeeecccccHH
Confidence 99997 7776665433 2566777888888888999999987665
No 312
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.67 E-value=0.22 Score=53.76 Aligned_cols=21 Identities=33% Similarity=0.397 Sum_probs=17.0
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
.++++.||+||||||.+-.+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 478999999999997765443
No 313
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.63 E-value=0.38 Score=56.15 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=26.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVS 74 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva 74 (901)
+.++|.|++|+|||..+ +.+...+..... ..+++++ +...+...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~--~~~v~yv-~~~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFS--DLKVSYM-SGDEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCC--CCeEEEE-EHHHHHHHHH
Confidence 45899999999999655 555554433222 2355555 3334444433
No 314
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.25 Score=56.50 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
+.+.+...|...+..++||||+|. +.....-.+++. +...|+-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~-LEep~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKA-VEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHH-hhcCCCCCeEEEEEC
Confidence 344444456667889999999996 444444444443 344444444555555
No 315
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.57 E-value=0.032 Score=52.76 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=15.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 046397 27 VIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~~i 45 (901)
+++.||.|||||+.+-..+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999997664443
No 316
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.56 E-value=0.21 Score=53.09 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~il 46 (901)
...+++.||+|||||+.+-.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999976654443
No 317
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=94.53 E-value=0.13 Score=61.96 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=38.7
Q ss_pred CeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC---CCCceEE
Q 046397 343 VRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV---QPGECYR 412 (901)
Q Consensus 343 ~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~---~~G~c~~ 412 (901)
.++.|+|--.+-.|-|-|+|=.++- ..+.. |-.+=.|-+||.-|. ..|.-.+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIck--------L~~S~----------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICK--------LRSSG----------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEE--------ecCCC----------cchHHHHHhccceeeeeccccceec
Confidence 3899999999999999999876653 22222 333456999999998 5676665
No 318
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.51 E-value=0.45 Score=52.63 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.6
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..+++.||+|+|||+.+-.+.
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999997765443
No 319
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.47 E-value=0.13 Score=62.14 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=21.5
Q ss_pred HHHHHHcCC---eEEEEcCCCChHHHHHHHHHH
Q 046397 17 LLTAISQNQ---VVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 17 il~~i~~~~---~viI~~~TGsGKTtq~p~~il 46 (901)
+...+.+++ .+|++||.|+||||.+-.++-
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555553 458999999999988766653
No 320
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.45 E-value=0.19 Score=59.37 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 120 DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 120 ~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
.|....+.++||||+|. +..+..-.+++.+-.-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45677899999999997 45555555554443333455666654
No 321
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.35 E-value=0.085 Score=58.49 Aligned_cols=51 Identities=24% Similarity=0.297 Sum_probs=34.1
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHH
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRIS 69 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~l 69 (901)
-+..++..+.+++|+|+|||||||..- .++...... ....+|++++...++
T Consensus 136 ~L~~~v~~~~nilI~G~tGSGKTTll~-aL~~~i~~~--~~~~rivtiEd~~El 186 (323)
T PRK13833 136 VIRSAIDSRLNIVISGGTGSGKTTLAN-AVIAEIVAS--APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHHhcC--CCCceEEEecCCccc
Confidence 345556778899999999999998773 344433211 123478887777665
No 322
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.29 E-value=0.14 Score=62.13 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=73.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc--EeeEEEeccc--ccC
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE--SVGYKVRLEG--MKG 100 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~--~vGy~vr~e~--~~~ 100 (901)
..++|+|.-|=|||..+-+.+.- +. ...+ ...|+||.|+.+.+.++.+..-+-+. .+|- .|.+....+. ..+
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~-~~-~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~-~lg~~~~v~~d~~g~~~~~~~ 307 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAA-AA-RLAG-SVRIIVTAPTPANVQTLFEFAGKGLE-FLGYKRKVAPDALGEIREVSG 307 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHH-HH-HhcC-CceEEEeCCCHHHHHHHHHHHHHhHH-HhCCccccccccccceeeecC
Confidence 38999999999999888766632 21 1111 56899999999998888765533221 1111 1111110010 112
Q ss_pred CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCC
Q 046397 101 RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLD 168 (901)
Q Consensus 101 ~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~ 168 (901)
+...|-|..|.... ..-++||||||=- +..-++..++ .. .+.++||.|+.
T Consensus 308 ~~~~i~y~~P~~a~---------~~~DllvVDEAAa--IplplL~~l~----~~---~~rv~~sTTIh 357 (758)
T COG1444 308 DGFRIEYVPPDDAQ---------EEADLLVVDEAAA--IPLPLLHKLL----RR---FPRVLFSTTIH 357 (758)
T ss_pred CceeEEeeCcchhc---------ccCCEEEEehhhc--CChHHHHHHH----hh---cCceEEEeeec
Confidence 33457788876443 1157999999974 4444444333 33 35688999985
No 323
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.29 E-value=0.14 Score=58.90 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 8 LPAYKEKNRLLTAIS--QNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 8 LPi~~~q~~il~~i~--~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
|.....+.+.+..+. .+.-++|+|||||||||....++-+
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ 281 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSE 281 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 444455544444443 3457889999999999887666544
No 324
>PLN03025 replication factor C subunit; Provisional
Probab=94.23 E-value=0.3 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=17.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~il 46 (901)
..+++.||+|+|||+.+-.+.-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999987755543
No 325
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.22 E-value=0.12 Score=57.05 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEe
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVR 94 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr 94 (901)
+.+..++..+.+++|+|+|||||||.+-. +++.... .....+|+++....++... -...+.+..
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~--~~~~~ri~tiEd~~El~~~------------~~~~v~~~~- 186 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAK--NDPTDRVVIIEDTRELQCA------------APNVVQLRT- 186 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhc--cCCCceEEEECCchhhcCC------------CCCEEEEEe-
Confidence 34555667788999999999999987744 3333321 1123478888777765321 111222221
Q ss_pred cccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCc
Q 046397 95 LEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVH 135 (901)
Q Consensus 95 ~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~H 135 (901)
. .+. .|...+++...+ .+.+.||+.|+=
T Consensus 187 ---~--~~~----~~~~~~l~~aLR----~~pD~iivGEiR 214 (299)
T TIGR02782 187 ---S--DDA----ISMTRLLKATLR----LRPDRIIVGEVR 214 (299)
T ss_pred ---c--CCC----CCHHHHHHHHhc----CCCCEEEEeccC
Confidence 1 111 166666665432 356789999994
No 326
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.21 E-value=0.1 Score=56.20 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=30.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEec
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQ 64 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvtq 64 (901)
..+..++|+|++|+|||+...|++.+.+. +|..+..+-+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEec
Confidence 46789999999999999999999887552 34455555544
No 327
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.12 Score=55.88 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCChHHHHH
Q 046397 24 NQVVIISGETGCGKTTQV 41 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~ 41 (901)
..++++.||||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 357899999999999433
No 328
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.13 E-value=0.27 Score=52.02 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=29.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
..+..++|.|++|+|||+.+.+++.+.+. .+..+..+-+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~ 61 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITT 61 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEc
Confidence 45789999999999999999999877652 3445544443
No 329
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.12 E-value=0.27 Score=57.23 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=22.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
+.+++.||+|+|||..+ +.+...+.+.. ...+++++
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~--~~~~v~yi 166 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE--PDLRVMYI 166 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhC--CCCeEEEE
Confidence 46899999999999655 34444443322 23456665
No 330
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.19 Score=60.78 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=28.1
Q ss_pred CcEEEECc-EEEEEeChhHHHHHHHHHHHHHHHHHHHHcCCC
Q 046397 713 GHLKMMGG-YLEFFMNPSVADMYQCIRRELDELIQNKLLNPR 753 (901)
Q Consensus 713 ~~~~~~d~-~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~p~ 753 (901)
|++..+|+ -....+.++...+++.=...++..+++.+.++-
T Consensus 465 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (620)
T PRK14948 465 AELVSLDSNRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSI 506 (620)
T ss_pred hheecccCCEEEEEeCHHHHHHHHHhHHHHHHHHHHHhCCCe
Confidence 44443333 234444778888888877889999998888773
No 331
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.06 E-value=0.2 Score=55.59 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
-+.+.....+...++.+|||||++. +..|..-.+++.+-...++..+|+.+-
T Consensus 96 ~~~~~~~~~~~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 96 ELAEFLSESPLEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HHHHHhccCCCCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 3333333344457889999999996 455555555554444444555555443
No 332
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.99 E-value=0.19 Score=61.06 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEEec
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVLMS 164 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIlmS 164 (901)
.+...+...|....+.++||||||. +..+..-.+++. +...| ...+|+++
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKt-LEEPP~~tifILaT 155 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKT-LEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHH-hhcCCCceEEEEEc
Confidence 3445555566778899999999996 444444444444 33333 34444444
No 333
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.93 E-value=0.073 Score=57.68 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=27.6
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
++.-+..+..++|.|+||+|||+.+.+++...+
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445567788999999999999999999887655
No 334
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.93 E-value=0.12 Score=60.07 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-CeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG-AVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
|.+.|++|+.. ..+..+||.|..||||||.+++=+...++..... ...-|+++-|.|....-++..+ -++|
T Consensus 213 IQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL-PeLG 284 (747)
T COG3973 213 IQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL-PELG 284 (747)
T ss_pred hhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc-hhhc
Confidence 44566776664 5678999999999999999887555444322111 1112677779999876655433 4444
No 335
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.86 E-value=0.14 Score=62.88 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=47.1
Q ss_pred CcHHHHHHHHH----HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 9 PAYKEKNRLLT----AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 9 Pi~~~q~~il~----~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
..+..|.+.+. ++.++..++|.||||+|||..++.+.+......+ ..+++..+++.+-.|+.++.
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~----~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG----KKVIISTRTKALQEQLLEED 83 (654)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC----CcEEEECCCHHHHHHHHHhh
Confidence 34566666554 4456777999999999999999999988765433 35666668888877766544
No 336
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.85 E-value=0.16 Score=55.26 Aligned_cols=130 Identities=19% Similarity=0.148 Sum_probs=65.0
Q ss_pred HHHHHHHHHc----CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 14 KNRLLTAISQ----NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 14 q~~il~~i~~----~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
-+++.+.+.. .+++.|.|..|+|||+.+.++..+...... -.+.+.+.........++.+.+...++......
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~--f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~- 81 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNR--FDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI- 81 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC--CTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS-
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccc--ccccccccccccccccccccccccccccccccc-
Confidence 3566666665 568999999999999988887755332222 233444444444334556666666665442211
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
.... ++-- -...+.+.|... -.+||+|.+++.. + +..+...+.....+.++|+.|=.
T Consensus 82 --------~~~~--~~~~-~~~~l~~~L~~~-----~~LlVlDdv~~~~---~-~~~l~~~~~~~~~~~kilvTTR~ 138 (287)
T PF00931_consen 82 --------SDPK--DIEE-LQDQLRELLKDK-----RCLLVLDDVWDEE---D-LEELREPLPSFSSGSKILVTTRD 138 (287)
T ss_dssp --------SCCS--SHHH-HHHHHHHHHCCT-----SEEEEEEEE-SHH---H-H-------HCHHSS-EEEEEESC
T ss_pred --------cccc--cccc-ccccchhhhccc-----cceeeeeeecccc---c-ccccccccccccccccccccccc
Confidence 0000 0000 122333333322 4689999998632 1 11111112223346788887654
No 337
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.79 E-value=0.14 Score=61.49 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHH
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDL 151 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~l 151 (901)
+.......|....+.++||||+|. +..+..-.+++.+
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtL 143 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTL 143 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHh
Confidence 334444456678899999999996 4454455555543
No 338
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.78 E-value=0.3 Score=61.41 Aligned_cols=119 Identities=21% Similarity=0.345 Sum_probs=60.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCceE
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRL 105 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 105 (901)
++++.||||+|||..+-. +.+.++. + .. .++.. . ..-.+-...++...|.+. +.+||.
T Consensus 598 ~~lf~Gp~GvGKT~lA~~-La~~l~~-~--~~-~~~~~-d--mse~~~~~~~~~l~g~~~-gyvg~~------------- 655 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALA-LAELLYG-G--EQ-NLITI-N--MSEFQEAHTVSRLKGSPP-GYVGYG------------- 655 (852)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHhC-C--Cc-ceEEE-e--HHHhhhhhhhccccCCCC-Cccccc-------------
Confidence 589999999999965543 3333331 1 11 23332 1 111111223333333322 234442
Q ss_pred EEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-----------CceEEEeccCCCHHHHHh
Q 046397 106 LFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-----------ELRLVLMSATLDAELFSS 174 (901)
Q Consensus 106 i~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-----------~~kiIlmSATl~~~~f~~ 174 (901)
..|.|...+.. ..+++|++||++. .+.+++..++ .++.... .-.+|+||..+..+.+.+
T Consensus 656 ---~~g~L~~~v~~----~p~svvllDEiek--a~~~v~~~Ll-q~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~ 725 (852)
T TIGR03345 656 ---EGGVLTEAVRR----KPYSVVLLDEVEK--AHPDVLELFY-QVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMA 725 (852)
T ss_pred ---ccchHHHHHHh----CCCcEEEEechhh--cCHHHHHHHH-HHhhcceeecCCCcEEeccccEEEEeCCCchHHHHH
Confidence 22455555554 3468999999985 4444433222 3332211 124778888877766655
Q ss_pred hh
Q 046397 175 YF 176 (901)
Q Consensus 175 yf 176 (901)
.+
T Consensus 726 ~~ 727 (852)
T TIGR03345 726 LC 727 (852)
T ss_pred hc
Confidence 44
No 339
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.78 E-value=0.45 Score=53.23 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=24.9
Q ss_pred CceEEEEecCcccC-cchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 125 GVTHVIVDEVHERG-MNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 125 ~~~~IIIDE~HeR~-~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
.=.+++|||+|..+ ...|+++-.+ .+=.|++.-||-
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~v-------E~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHV-------ENGTIILIGATT 140 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhh-------cCCeEEEEeccC
Confidence 34689999999533 3556666554 345788888985
No 340
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.68 E-value=0.23 Score=58.43 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
.+...+...|....+.++||||+|. +..+..-.+++.+-...++..+|+.
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3444555566778899999999996 3344444444443322233444443
No 341
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.58 E-value=0.3 Score=49.50 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
++..+++||-.||||+-.++-+...... |. ++++--|.-- .|. + . +.|.-.+. ....
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~---g~--~v~vfkp~iD------~R~----~--~-~~V~Sr~G-----~~~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA---GM--KVLVFKPAID------TRY----G--V-GKVSSRIG-----LSSE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc---CC--eEEEEecccc------ccc----c--c-ceeeeccC-----Cccc
Confidence 5677999999999999887776654432 22 3444335411 111 0 0 01110000 0122
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHH
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAE 170 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~ 170 (901)
-++|-.+.-+...+........+++|.||||+ ...+-+...+.++... +-+-.|-+.++.+
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ---F~~~~~v~~l~~lad~---lgi~Vi~~GL~~D 121 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQ---FFDEELVYVLNELADR---LGIPVICYGLDTD 121 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhH---hCCHHHHHHHHHHHhh---cCCEEEEeccccc
Confidence 34555666677777655444448899999999 4444444455554432 2344455666554
No 342
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.54 E-value=0.39 Score=55.17 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=73.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHH-HHHHHHHHHHHHhCCccCcEeeEEEecc--cc--c
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRI-SAMSVSERVASERGEKLGESVGYKVRLE--GM--K 99 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~-la~qva~rva~e~~~~~g~~vGy~vr~e--~~--~ 99 (901)
+..++.|..|||||..+.+.++..++.. ....+++|+-|+.- +..++...+..... .+|...-+...-. .. .
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~-~~g~~~~~~~~~~~~~i~~~ 78 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLS-IEGINYEFKKSKSSMEIKIL 78 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHH-HcCChhheeecCCccEEEec
Confidence 4578999999999988888877777653 13467888877766 55566666654332 1221111111100 00 0
Q ss_pred CCCceEEEEcH-HHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCC
Q 046397 100 GRDTRLLFCTT-GILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLD 168 (901)
Q Consensus 100 ~~~t~Ii~~T~-g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~ 168 (901)
.....|+|..- +---+ +. ....++.+.+||+.+ +..+.+..++..+ +.......|++|.|++
T Consensus 79 ~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~--~~~~~~~~l~~rl-r~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQ--LTFEDIKELIPRL-RETGGKKFIIFSSNPE 141 (396)
T ss_pred CCCeEEEeecccCChhH-hh---Ccceeeeehhhhhhh--cCHHHHHHHHHHh-hccCCccEEEEEcCcC
Confidence 11345555443 11100 11 234478999999998 4445555555443 2111222478888874
No 343
>PRK06620 hypothetical protein; Validated
Probab=93.48 E-value=0.34 Score=50.66 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.9
Q ss_pred CeEEEEcCCCChHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVP 42 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p 42 (901)
+.+++.||+|||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999996553
No 344
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.41 E-value=0.43 Score=53.82 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHH
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDL 151 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~l 151 (901)
.+...+...|...+..+|||||+|. +..+....+++.+
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~l 141 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTL 141 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHH
Confidence 3555555566778889999999996 3344444444444
No 345
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.41 E-value=0.31 Score=56.78 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+.++|.||+|+|||+.+- .+...+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l 165 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHAL 165 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHH
Confidence 468999999999996544 444443
No 346
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.41 E-value=0.15 Score=52.72 Aligned_cols=20 Identities=45% Similarity=0.622 Sum_probs=17.1
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
.+++++||+|+||||.+...
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 57999999999999987543
No 347
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.38 E-value=0.66 Score=50.77 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.5
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..+++.||+|||||+.+-.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 37899999999999876444
No 348
>PRK09087 hypothetical protein; Validated
Probab=93.36 E-value=0.82 Score=48.25 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
++.++|+||+|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999996554
No 349
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.28 E-value=0.15 Score=53.12 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.9
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..+++.||+|+||||.+-..
T Consensus 51 ~h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHH
Confidence 47999999999999766433
No 350
>PRK04195 replication factor C large subunit; Provisional
Probab=93.25 E-value=0.84 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~il 46 (901)
.+.++|.||+|+||||.+-.++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999987755443
No 351
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.24 E-value=0.95 Score=49.69 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=75.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|-.|+||||.+........ ..|..+.+.-.-.-|+.|+..-+..++..|..+ |... .-...+.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~---~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v-------I~~~-~G~DpAa 208 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK---QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV-------ISGK-EGADPAA 208 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH---HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE-------EccC-CCCCcHH
Confidence 4788999999999999887665432 355666666666788888887776666554432 1111 1112233
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCC------ceEEEeccCCCH
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPE------LRLVLMSATLDA 169 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~------~kiIlmSATl~~ 169 (901)
++|..-+.- .-+++++|++|=+-. --+..-|+.-|+.+.+. .|. -.++.+=||.-.
T Consensus 209 VafDAi~~A--------kar~~DvvliDTAGR-Lhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 209 VAFDAIQAA--------KARGIDVVLIDTAGR-LHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred HHHHHHHHH--------HHcCCCEEEEeCccc-ccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 444333322 236899999999984 33444455556655542 222 245566898733
No 352
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.21 E-value=0.069 Score=56.30 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=16.9
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 046397 27 VIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~~ile 47 (901)
++|.|+.||||||.+...+-+
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 479999999999877666544
No 353
>PTZ00293 thymidine kinase; Provisional
Probab=93.19 E-value=0.5 Score=48.96 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
.+...++.||.+|||||.+.+.+....
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~ 29 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFT 29 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHH
Confidence 356789999999999999888776554
No 354
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.18 E-value=0.093 Score=56.89 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=29.6
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRI 68 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~ 68 (901)
.++.+.+++|+|+|||||||..-.+ ++..-.. ..+|++++...+
T Consensus 123 ~v~~~~~ili~G~tGSGKTT~l~al-l~~i~~~----~~~iv~iEd~~E 166 (270)
T PF00437_consen 123 AVRGRGNILISGPTGSGKTTLLNAL-LEEIPPE----DERIVTIEDPPE 166 (270)
T ss_dssp CHHTTEEEEEEESTTSSHHHHHHHH-HHHCHTT----TSEEEEEESSS-
T ss_pred ccccceEEEEECCCccccchHHHHH-hhhcccc----ccceEEeccccc
Confidence 3456799999999999999988555 4433211 246777665544
No 355
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.17 E-value=0.17 Score=56.13 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=33.2
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHH
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRIS 69 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~l 69 (901)
-+..++..+.+++|+|+|||||||.+-. ++..... .....+|+++..+.++
T Consensus 140 ~L~~~v~~~~~ilI~G~tGSGKTTll~a-L~~~~~~--~~~~~rivtIEd~~El 190 (319)
T PRK13894 140 AIIAAVRAHRNILVIGGTGSGKTTLVNA-IINEMVI--QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHhhhh--cCCCceEEEEcCCCcc
Confidence 3444567889999999999999976643 4433221 1223467777666654
No 356
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.11 E-value=0.56 Score=54.69 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHHHHHH----------cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHH
Q 046397 7 NLPAYKEKNRLLTAIS----------QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSER 76 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~----------~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~r 76 (901)
..++.++|.-|+.+|. .-+..+|..|-+-||||.+.-+.+...+-.. .....+.++.|+..-|.+....
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHH
Confidence 4567889999999986 2246889999999999887754443332211 2233577777998888777765
Q ss_pred HHHHhCCc--cCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccCcchhHHHHHHHHH
Q 046397 77 VASERGEK--LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERGMNEDFLLIVLKDL 151 (901)
Q Consensus 77 va~e~~~~--~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~~~~d~ll~~lk~l 151 (901)
+..-.... +...++++. ....|.+.-....++.+..++ .=.+..+.|+||.|+.+-.. -+...++.-
T Consensus 138 ar~mv~~~~~l~~~~~~q~-------~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~~~~~~g 209 (546)
T COG4626 138 ARDMVKRDDDLRDLCNVQT-------HSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMYSEAKGG 209 (546)
T ss_pred HHHHHHhCcchhhhhcccc-------ceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHHHHHHhh
Confidence 54332211 111111111 111233333344445555554 23457899999999843322 344555555
Q ss_pred HhhCCCceEEEeccC
Q 046397 152 LSRRPELRLVLMSAT 166 (901)
Q Consensus 152 l~~~~~~kiIlmSAT 166 (901)
+..+|+..++..|-.
T Consensus 210 ~~ar~~~l~~~ITT~ 224 (546)
T COG4626 210 LGARPEGLVVYITTS 224 (546)
T ss_pred hccCcCceEEEEecC
Confidence 667788888777654
No 357
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.09 E-value=0.13 Score=57.55 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=31.7
Q ss_pred HHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHH
Q 046397 18 LTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISA 70 (901)
Q Consensus 18 l~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la 70 (901)
-.++..+.+++|+|+|||||||..-. ++... ....+|+.+..+.++.
T Consensus 156 ~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~i-----~~~~rivtiEd~~El~ 202 (344)
T PRK13851 156 HACVVGRLTMLLCGPTGSGKTTMSKT-LISAI-----PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHcCCeEEEECCCCccHHHHHHH-HHccc-----CCCCCEEEECCCcccc
Confidence 34456788999999999999987643 33322 1234677777776553
No 358
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.08 E-value=0.45 Score=54.06 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=21.5
Q ss_pred HHHHHHHcCC---eEEEEcCCCChHHHHHHHH
Q 046397 16 RLLTAISQNQ---VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 16 ~il~~i~~~~---~viI~~~TGsGKTtq~p~~ 44 (901)
.+...+.+++ .+++.||.|+|||+.+-.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4455555553 7889999999999777655
No 359
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.00 E-value=0.45 Score=57.50 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=21.6
Q ss_pred HHHHHHcC---CeEEEEcCCCChHHHHHHHHHH
Q 046397 17 LLTAISQN---QVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 17 il~~i~~~---~~viI~~~TGsGKTtq~p~~il 46 (901)
+..++.++ +..|++||.|+||||.+-.+.-
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 44445554 3488999999999988866543
No 360
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.99 E-value=0.33 Score=59.49 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=68.1
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.-|+...|.+++.. ....++|.|..|||||+.+.--+... +..+...+-.|+++..+|.+|..+.+|+....|
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayL-l~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg---- 266 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWL-LARGQAQPEQILLLAFGRQAAEEMDERIRERLG---- 266 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHH-HHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC----
Confidence 35788888877754 34567899999999997765544332 222323344788888999999999999976543
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecC
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEV 134 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~ 134 (901)
...|.+.|--.+-..+.... ....++.+..|+-
T Consensus 267 ---------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~ 301 (684)
T PRK11054 267 ---------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSK 301 (684)
T ss_pred ---------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchH
Confidence 13577888766654443221 2233444455554
No 361
>CHL00181 cbbX CbbX; Provisional
Probab=92.96 E-value=0.81 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~il 46 (901)
+.++++.||+|+|||+.+-.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999977655533
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.95 E-value=0.21 Score=58.95 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=35.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
..+..++|.||+|+||||...||+.+.+ .+|.++..+- .-+...|+..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s---~eEs~~~i~~~~ 310 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFA---YEESRAQLLRNA 310 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEE---eeCCHHHHHHHH
Confidence 4568999999999999999999988765 2344554443 344455666554
No 363
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.92 E-value=0.42 Score=61.10 Aligned_cols=33 Identities=33% Similarity=0.632 Sum_probs=26.2
Q ss_pred HHHHHHHHH---cCCeEEEEcCCCChHHHHHHHHHH
Q 046397 14 KNRLLTAIS---QNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 14 q~~il~~i~---~~~~viI~~~TGsGKTtq~p~~il 46 (901)
+..++..+. ..+.++|+||.|.||||.+.+|+.
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 455555554 457899999999999999999873
No 364
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.88 E-value=0.38 Score=59.58 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=81.5
Q ss_pred HHHHHHHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh-CCcc
Q 046397 11 YKEKNRLLTAI----SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER-GEKL 85 (901)
Q Consensus 11 ~~~q~~il~~i----~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~-~~~~ 85 (901)
..||..-++.+ ++|=+-|+.-+-|-|||.|..-++.+.+-+.+.-+.-.|+| |+-.+.. +--.+.... |.++
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVV--pTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVV--PTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEe--echhhhh-hhHHHhhhCCcceE
Confidence 46676666665 46778899999999999998877776555444433445666 8855432 111121111 1111
Q ss_pred CcEeeEE-E----ecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcc-cCcchhHHHHHHHHHHhhCCCce
Q 046397 86 GESVGYK-V----RLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHE-RGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 86 g~~vGy~-v----r~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~He-R~~~~d~ll~~lk~ll~~~~~~k 159 (901)
-...|-. - |-.....+..++.+++...+++-+.. ..-.++.++|+||+|. .++.+ ..+..++..+ .-|
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaqnIKnfks----qrWQAllnfn-sqr 767 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQNIKNFKS----QRWQALLNFN-SQR 767 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhhhhcchhH----HHHHHHhccc-hhh
Confidence 1122211 0 11222334467878888777765432 2345678999999995 12222 2233333332 334
Q ss_pred EEEeccCC
Q 046397 160 LVLMSATL 167 (901)
Q Consensus 160 iIlmSATl 167 (901)
.+|++.|.
T Consensus 768 RLLLtgTP 775 (1958)
T KOG0391|consen 768 RLLLTGTP 775 (1958)
T ss_pred eeeecCCc
Confidence 56777774
No 365
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.83 E-value=0.99 Score=51.17 Aligned_cols=133 Identities=22% Similarity=0.335 Sum_probs=83.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++.+|=-||||||.+...... +.. ++..+.++++-..|.+|....+.+++..+.++... + .....
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~---------~~~~P 167 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G---------TEKDP 167 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C---------CCCCH
Confidence 46888999999999998776543 233 67778888888999999988888877766544221 1 01111
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCC--CHHHHHhhhC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATL--DAELFSSYFG 177 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl--~~~~f~~yf~ 177 (901)
+-++..+ +... ....+++||||=+-...++.+.+-. ++.+-. ..|+=-++.+-|++ ++...++-|+
T Consensus 168 v~Iak~a--l~~a----k~~~~DvvIvDTAGRl~ide~Lm~E-l~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 168 VEIAKAA--LEKA----KEEGYDVVIVDTAGRLHIDEELMDE-LKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HHHHHHH--HHHH----HHcCCCEEEEeCCCcccccHHHHHH-HHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 1111111 1111 2356899999999865565554444 444433 56776777788877 4444444454
No 366
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.82 E-value=0.28 Score=59.95 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva 78 (901)
+|++++.++...+-.+|.|=+|+||||.+...|--... . |+ +|+.|.-|..++..+--++.
T Consensus 674 Qr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-~--gk--kVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 674 QRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-L--GK--KVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred HHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-c--CC--eEEEEehhhHHHHHHHHHHh
Confidence 56777888888889999999999999888776543332 2 22 67888788888777766663
No 367
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.75 E-value=0.23 Score=61.08 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.+.|.+++.. ....++|.|..|||||+.+..-+...+.. ....+-+|+++..|+-+|.++.+|+....+..
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~-~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG-CGYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh-cCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 34567777765 34567888999999998877666544322 22234578888899999999999997765421
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHhcCC--CCC-CceEEEEecCc
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR--NLK-GVTHVIVDEVH 135 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~-~~~~IIIDE~H 135 (901)
....+.++|-..+...+.... .+. .-..-|+|+..
T Consensus 75 -----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 -----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred -----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 112477899776654443221 110 11345677765
No 368
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.66 E-value=0.46 Score=56.81 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=14.5
Q ss_pred CeEEEEcCCCChHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVP 42 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p 42 (901)
+.++|.|++|+|||..+-
T Consensus 315 NpL~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH 332 (617)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 458999999999995443
No 369
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.65 E-value=0.43 Score=46.81 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=56.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEec-cccc-----
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRL-EGMK----- 99 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~-e~~~----- 99 (901)
.+.|+|++|+||||.+.. +.+.+-+.+ -+-+-+++ |- | ..-|..+||.+.. ++..
T Consensus 7 ki~ITG~PGvGKtTl~~k-i~e~L~~~g-~kvgGf~t--~E----------V-----R~gGkR~GF~Ivdl~tg~~~~la 67 (179)
T COG1618 7 KIFITGRPGVGKTTLVLK-IAEKLREKG-YKVGGFIT--PE----------V-----REGGKRIGFKIVDLATGEEGILA 67 (179)
T ss_pred EEEEeCCCCccHHHHHHH-HHHHHHhcC-ceeeeEEe--ee----------e-----ecCCeEeeeEEEEccCCceEEEE
Confidence 579999999999987654 444443221 11223444 21 2 1235567776622 1000
Q ss_pred -CCCceEEEEcHHHHHHHHhc------CCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC
Q 046397 100 -GRDTRLLFCTTGILLRRLLV------DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR 155 (901)
Q Consensus 100 -~~~t~Ii~~T~g~Llr~L~~------~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~ 155 (901)
......-++-.++.+..+.. ...+..-++|||||+--.-+.+.-+...+..++...
T Consensus 68 ~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~ 130 (179)
T COG1618 68 RVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG 130 (179)
T ss_pred EcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence 00112222222222221110 012445689999999955466666666677766543
No 370
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.50 E-value=0.71 Score=55.99 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
++..+...|...++.+|||||+|. +..+..-. |...+...|+--++++.+|
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~--Ls~~a~na-LLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHM--LSQAAFNA-FLKTLEEPPSYAIFILATT 159 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECccc--CCHHHHHH-HHHHHhCCCCCeEEEEEeC
Confidence 334445567888999999999997 33333333 3344444444333444444
No 371
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.49 E-value=1 Score=56.84 Aligned_cols=120 Identities=24% Similarity=0.372 Sum_probs=59.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCceE
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRL 105 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 105 (901)
.+++.||||+|||+.+ ..+.+.+... +. ..|.+ ....... ...++..+|.+.| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~~--~~-~~i~i--d~se~~~--~~~~~~LiG~~pg-y~g~~~------------ 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFDS--DD-AMVRI--DMSEFME--KHSVSRLVGAPPG-YVGYEE------------ 658 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhcC--CC-cEEEE--EhHHhhh--hhhHHHHhCCCCc-ccccch------------
Confidence 6899999999999866 4444444321 11 12222 1111111 1123334444332 444431
Q ss_pred EEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC---------CCce--EEEeccCCCHHHHHh
Q 046397 106 LFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR---------PELR--LVLMSATLDAELFSS 174 (901)
Q Consensus 106 i~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~---------~~~k--iIlmSATl~~~~f~~ 174 (901)
.+.+...+.. ..+++|++||++. +..+....++. ++... -+++ +|+||..+..+.+.+
T Consensus 659 ----~g~l~~~v~~----~p~~vLllDEiek--a~~~v~~~Ll~-ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~ 727 (857)
T PRK10865 659 ----GGYLTEAVRR----RPYSVILLDEVEK--AHPDVFNILLQ-VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE 727 (857)
T ss_pred ----hHHHHHHHHh----CCCCeEEEeehhh--CCHHHHHHHHH-HHhhCceecCCceEEeecccEEEEeCCcchHHHHH
Confidence 1223333322 3357999999996 44554443333 33211 1233 567777776555555
Q ss_pred hhC
Q 046397 175 YFG 177 (901)
Q Consensus 175 yf~ 177 (901)
.|+
T Consensus 728 ~~~ 730 (857)
T PRK10865 728 RFG 730 (857)
T ss_pred hcc
Confidence 444
No 372
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=92.47 E-value=0.41 Score=51.99 Aligned_cols=67 Identities=24% Similarity=0.205 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeee-ccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCC
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQ-LKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGI 879 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (901)
.-|=++||+.+.|.|. .|+|.+-+ .+..| |+.-|.|....=+|+ +++||.|.+.||-.++..|+++.
T Consensus 38 KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~a~Ge-G~sKK~AKh~AA~~~L~~lk~l~ 108 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEITATGE-GKSKKLAKHRAAEALLKELKKLP 108 (339)
T ss_pred CChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeEEecC-CCchhHHHHHHHHHHHHHHhcCC
Confidence 5678999999999886 48898854 77777 888888888888887 79999999999999999999853
No 373
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.45 E-value=0.17 Score=56.69 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 113 LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 113 Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
+...+...+...+..++||||+|. +..+..-.+++.+-.-.++..+|+.+.
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 334444455677889999999996 444444444444333333455555443
No 374
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.39 E-value=0.42 Score=57.29 Aligned_cols=31 Identities=35% Similarity=0.516 Sum_probs=22.2
Q ss_pred HHHHHHHcCC---eEEEEcCCCChHHHHHHHHHH
Q 046397 16 RLLTAISQNQ---VVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 16 ~il~~i~~~~---~viI~~~TGsGKTtq~p~~il 46 (901)
.+...+.+++ .++++||.|+||||.+-.+..
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555555553 468999999999988766543
No 375
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.38 E-value=1 Score=59.40 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHH--HHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 9 PAYKEKNRLLTAISQ--NQVVIISGETGCGKTTQVPQFI--LESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 9 Pi~~~q~~il~~i~~--~~~viI~~~TGsGKTtq~p~~i--le~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
.+..-|.+.+..+.. +++++|.|..|+||||.+-..+ +..+. ......|+.+.|+--+|..+.+ .|..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~---e~~g~~V~glAPTgkAa~~L~e-----~Gi~ 906 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP---ESERPRVVGLGPTHRAVGEMRS-----AGVD 906 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh---hccCceEEEEechHHHHHHHHH-----hCch
Confidence 356678888888774 5899999999999998753322 22111 1122357667799877765532 1211
Q ss_pred cCcEeeEEEecccccCCCceEEEEcHHHHHHHH-----hcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 85 LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRL-----LVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 85 ~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L-----~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
-.|-..||... ..+......++|||||+=- +....+..+++.+ . ..+.|
T Consensus 907 ----------------------A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASM--V~~~~m~~ll~~~-~-~~gar 960 (1623)
T PRK14712 907 ----------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALI-A-AGGGR 960 (1623)
T ss_pred ----------------------HhhHHHHhccccchhhcccCCCCCCcEEEEEcccc--ccHHHHHHHHHhh-h-hCCCE
Confidence 01222222210 1111233468999999985 4443333444432 2 24578
Q ss_pred EEEeccC
Q 046397 160 LVLMSAT 166 (901)
Q Consensus 160 iIlmSAT 166 (901)
+|++-=+
T Consensus 961 vVLVGD~ 967 (1623)
T PRK14712 961 AVASGDT 967 (1623)
T ss_pred EEEEcch
Confidence 8888755
No 376
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.29 E-value=0.99 Score=50.11 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=37.4
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
|-+-...-+.+.+...|...++.++||||+|. ++....-.+||. +...|+..+|+++..
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~-LEEPp~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKT-LEEPGNGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHH-HhCCCCCeEEEEECC
Confidence 43334445666666677788999999999997 444444444444 455566666666554
No 377
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.20 E-value=0.52 Score=52.78 Aligned_cols=60 Identities=22% Similarity=0.167 Sum_probs=38.3
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
|.+-.-.-|.+.+...+....+.++|||++|. ++....-.+||.+-.-.++..+|+.|..
T Consensus 112 I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCHHHHHHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 44444445666666666778899999999997 5555556666665443344555655554
No 378
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.14 E-value=0.72 Score=51.16 Aligned_cols=53 Identities=26% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
-+.+.+...+...++.++||||+|. ++....-.+||.+-.-.++..+|+.|..
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3444455566777899999999997 5555556666644333345566666654
No 379
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.13 E-value=0.45 Score=59.09 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.+.|.+++.. ....++|.|..|||||+.+..-+...+ ....-.+-.|+++..|+-+|.++.+|+.+..+..
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li-~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~----- 76 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLL-SVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS----- 76 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc-----
Confidence 44667777764 346789999999999988766655433 2222234578888899999999999997765421
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHhc-CC---CCCCceEEEEecCcc
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLLV-DR---NLKGVTHVIVDEVHE 136 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~-~~---~l~~~~~IIIDE~He 136 (901)
...+.++|-..+...+.. .. .+. -..-|+|+.++
T Consensus 77 ------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 125678997655443332 21 111 12346777653
No 380
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.12 E-value=0.12 Score=42.45 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCChHHHHH
Q 046397 24 NQVVIISGETGCGKTTQV 41 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~ 41 (901)
+++++|+|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999875
No 381
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.09 E-value=0.25 Score=55.19 Aligned_cols=46 Identities=30% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHH
Q 046397 19 TAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISA 70 (901)
Q Consensus 19 ~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la 70 (901)
.++..+.+++|+|+|||||||.+-. ++...- ..-+|+++.-+.++.
T Consensus 155 ~~v~~~~nili~G~tgSGKTTll~a-L~~~ip-----~~~ri~tiEd~~El~ 200 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNA-ALREIP-----AIERLITVEDAREIV 200 (332)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHH-HHhhCC-----CCCeEEEecCCCccc
Confidence 3456788999999999999987733 444331 123677765555543
No 382
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.03 E-value=0.24 Score=52.10 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=29.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
..+..++|.|++|+|||+...|++.+.+.+. |..|..+-+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ 56 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF 56 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe
Confidence 3578999999999999999999998876431 344544443
No 383
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.01 E-value=0.58 Score=52.03 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
-+.+.+...+....+.++|||++|. +.....-.+||.+-.-.++..+|+.|..
T Consensus 94 ~l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 94 EINEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3444555566778899999999997 5555555666655443344555555443
No 384
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.98 E-value=0.85 Score=62.32 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHH---HHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 8 LPAYKEKNRLLTAISQ--NQVVIISGETGCGKTTQVP---QFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 8 LPi~~~q~~il~~i~~--~~~viI~~~TGsGKTtq~p---~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
..+...|.+.+..+.. ++.++|.|..|+||||.+- ..+.+.+ +. ....|+.+.|+-.+|..+.+ .
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~~---~g~~v~glApT~~Aa~~L~~-----~- 1087 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-ES---EQLQVIGLAPTHEAVGELKS-----A- 1087 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-Hh---cCCeEEEEeChHHHHHHHHh-----c-
Confidence 3567888888888764 4788999999999998873 3333332 21 12467777899877766532 1
Q ss_pred CccCcEeeEEEecccccCCCceEEEEcHHHHHHHH---hcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 83 EKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRL---LVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 83 ~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L---~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
|+. -.|-..++... ...+.+...++|||||+=- +.+..+..+++.+ ..+..|
T Consensus 1088 -------g~~--------------a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasM--v~~~~~~~l~~~~--~~~~ak 1142 (1960)
T TIGR02760 1088 -------GVQ--------------AQTLDSFLTDISLYRNSGGDFRNTLFILDESSM--VSNFQLTHATELV--QKSGSR 1142 (1960)
T ss_pred -------CCc--------------hHhHHHHhcCcccccccCCCCcccEEEEEcccc--ccHHHHHHHHHhc--cCCCCE
Confidence 111 01222232110 1122355678999999974 4554444444433 234578
Q ss_pred EEEeccC
Q 046397 160 LVLMSAT 166 (901)
Q Consensus 160 iIlmSAT 166 (901)
+|++-=+
T Consensus 1143 ~vlvGD~ 1149 (1960)
T TIGR02760 1143 AVSLGDI 1149 (1960)
T ss_pred EEEeCCh
Confidence 8877544
No 385
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.96 E-value=1.3 Score=49.53 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
....+++-.....+..|+|.|++|+||++.+ .+|..
T Consensus 9 ~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lA-r~iH~ 44 (329)
T TIGR02974 9 LEVLEQVSRLAPLDRPVLIIGERGTGKELIA-ARLHY 44 (329)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCChHHHHH-HHHHH
Confidence 3455666666677888999999999999644 44443
No 386
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.95 E-value=0.54 Score=57.08 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHH
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p 42 (901)
..++..+...++.++..|||+|||...+
T Consensus 31 ~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 31 TRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred HHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 3566777888999999999999996654
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.90 E-value=0.23 Score=50.62 Aligned_cols=27 Identities=41% Similarity=0.594 Sum_probs=21.5
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
+-..+..+.+++|+|||||||||.+-.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 344456789999999999999987643
No 388
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.89 E-value=0.32 Score=54.89 Aligned_cols=32 Identities=38% Similarity=0.659 Sum_probs=23.2
Q ss_pred HHHHHH-cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 17 LLTAIS-QNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 17 il~~i~-~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+.+.+. .+..++|+|||||||||.+-. ++...
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~a-Ll~~i 158 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAA-IIREL 158 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHH-HHHHH
Confidence 445554 678999999999999987743 44433
No 389
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.83 E-value=0.86 Score=52.71 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=19.8
Q ss_pred HHHHHHcC--CeEEEEcCCCChHHHHHHHH
Q 046397 17 LLTAISQN--QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 17 il~~i~~~--~~viI~~~TGsGKTtq~p~~ 44 (901)
+...+.++ ..+++.||+|+||||.+-.+
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARII 56 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHH
Confidence 33334444 37899999999999777554
No 390
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.80 E-value=0.26 Score=57.40 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=50.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccC
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKG 100 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~ 100 (901)
+..+..++|.|++|+||||...|++.+.. ..+.. ++++ -..+...|+..|. ..++.....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~--vlYv-s~Ees~~qi~~ra-~rlg~~~~~------------- 136 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGK--VLYV-SGEESASQIKLRA-ERLGLPSDN------------- 136 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCe--EEEE-EccccHHHHHHHH-HHcCCChhc-------------
Confidence 34567999999999999999999987654 12333 3332 2334455665553 333332111
Q ss_pred CCceEEEE---cHHHHHHHHhcCCCCCCceEEEEecCc
Q 046397 101 RDTRLLFC---TTGILLRRLLVDRNLKGVTHVIVDEVH 135 (901)
Q Consensus 101 ~~t~Ii~~---T~g~Llr~L~~~~~l~~~~~IIIDE~H 135 (901)
+.+. .-..++..+.. .+.++||||+++
T Consensus 137 ----l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq 166 (446)
T PRK11823 137 ----LYLLAETNLEAILATIEE----EKPDLVVIDSIQ 166 (446)
T ss_pred ----EEEeCCCCHHHHHHHHHh----hCCCEEEEechh
Confidence 1221 12344444422 356899999998
No 391
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.79 E-value=0.18 Score=53.89 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=21.7
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILES 48 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~ 48 (901)
.+..++.++|.||.|+||||.+ ..+...
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~ 39 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLL-QSIANA 39 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence 4568999999999999999754 444443
No 392
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=91.77 E-value=0.25 Score=44.05 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=35.2
Q ss_pred CCCceeeeeccCCceEEEEEEcC----eeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 827 AAPSYRTKQLKNGQFRSTVEFNG----MEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 827 ~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
..|.|......+ .|+++|.+=. ..|.|.|.++||.|.+.||-+|..-|-.
T Consensus 20 ~~P~~~~~~~~~-~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~ 73 (90)
T PF03368_consen 20 LKPEFEIEKIGS-GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHE 73 (90)
T ss_dssp SS-EEEEEE--G--EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCC-cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHH
Confidence 468888876554 8999998753 2499999999999999999999998876
No 393
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=91.76 E-value=0.63 Score=57.84 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.+.|.+++.. ....++|.|..|||||+.+..-+.... ....-.+-.|+++.-|+-+|.++.+|+.+..+..
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li-~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~----- 81 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLM-QVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS----- 81 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC-----
Confidence 45667777764 345778999999999987765555332 2222234578888899999999999997765421
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHhcC-C---CCCCceEEEEecCc
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-R---NLKGVTHVIVDEVH 135 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-~---~l~~~~~IIIDE~H 135 (901)
...+.++|-..+...+... . .+. -..-|+|+.+
T Consensus 82 ------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 82 ------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred ------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 1246789976555443322 1 111 1235778765
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.73 E-value=0.81 Score=45.91 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=18.7
Q ss_pred CCceEEEEecCcccCcchhHHHHHHHHHHh
Q 046397 124 KGVTHVIVDEVHERGMNEDFLLIVLKDLLS 153 (901)
Q Consensus 124 ~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~ 153 (901)
.+-+++||||+=..-....-+...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 456899999998554667666677777776
No 395
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.73 E-value=0.74 Score=56.78 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVG 90 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vG 90 (901)
.+.|.+++.. ....++|.|..|||||+.+..-+...+...+ -.+-.|+++..++.+|.++-+|+.+..+..
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-YKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 3456676664 3567899999999999888877765543222 234567777789999999999997766421
Q ss_pred EEEecccccCCCceEEEEcHHHHHHHHhcCC-----CCCCceEEEEecCcc
Q 046397 91 YKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-----NLKGVTHVIVDEVHE 136 (901)
Q Consensus 91 y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-----~l~~~~~IIIDE~He 136 (901)
...++.+.|-..|...+.... ... ..-|+||...
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~~~--~~~il~~~~~ 112 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGYKS--NFSLFDETDQ 112 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCCCC--CCEEeCHHHH
Confidence 124678889776655443321 112 2357787763
No 396
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.73 E-value=1.5 Score=58.76 Aligned_cols=126 Identities=15% Similarity=0.085 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 9 PAYKEKNRLLTAISQ--NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 9 Pi~~~q~~il~~i~~--~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+...|.+.+..+.. +++++|.|..|+||||.+-..+ +.+..........|+.+.|+--+|..+.+ .
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~-~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~----- 1035 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVM-SAVNTLPESERPRVVGLGPTHRAVGEMRS-----A----- 1035 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH-HHHHHhhcccCceEEEECCcHHHHHHHHh-----c-----
Confidence 456778888888876 4799999999999998764332 22211111122356667799877655432 1
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHh-----cCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLL-----VDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~-----~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
|+. -.|-..+|.... .+.....-++|||||+=- +++..+..+++.+- ..+.|+|
T Consensus 1036 ---Gi~--------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSM--v~~~~m~~Ll~~~~--~~garvV 1094 (1747)
T PRK13709 1036 ---GVD--------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSM--VGNTDMARAYALIA--AGGGRAV 1094 (1747)
T ss_pred ---Ccc--------------hhhHHHHhcccccccccccCCCCCCcEEEEEcccc--ccHHHHHHHHHhhh--cCCCEEE
Confidence 210 123333332110 011223458999999974 45544444444332 2357888
Q ss_pred EeccC
Q 046397 162 LMSAT 166 (901)
Q Consensus 162 lmSAT 166 (901)
++-=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 87654
No 397
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.72 E-value=1.1 Score=44.82 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
....+.+-........|+|.|++|+||++ +...|.+
T Consensus 9 ~~~~~~~~~~a~~~~pVlI~GE~GtGK~~-lA~~IH~ 44 (168)
T PF00158_consen 9 KRLREQAKRAASSDLPVLITGETGTGKEL-LARAIHN 44 (168)
T ss_dssp HHHHHHHHHHTTSTS-EEEECSTTSSHHH-HHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcHHH-HHHHHHH
Confidence 34455556666677899999999999994 3455544
No 398
>PHA00729 NTP-binding motif containing protein
Probab=91.68 E-value=0.57 Score=49.06 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=20.5
Q ss_pred HHHHHHcC--CeEEEEcCCCChHHHHHHHHH
Q 046397 17 LLTAISQN--QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 17 il~~i~~~--~~viI~~~TGsGKTtq~p~~i 45 (901)
+++.+..+ .+++|.|++|+|||+.+....
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 44444433 479999999999997765443
No 399
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.62 E-value=0.22 Score=56.43 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
.+-.++.+.|+||+|+||||.+- .|......+.....+.|+++.-|..-+..+.+.+
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~-~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQ-KIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHH-HHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 34678999999999999997543 3554432221222344444423323333433333
No 400
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.59 E-value=0.15 Score=54.87 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+.-++|+|||||||||.+.-.|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamI 146 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMI 146 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHH
Confidence 45678999999999998876655
No 401
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.37 E-value=0.42 Score=50.83 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=35.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
+..+..++|.|++|||||+.+.+++.+.+. +|..+..+-+ .+...++.+++
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~---ee~~~~i~~~~ 68 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVAL---EEHPVQVRRNM 68 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEe---eCCHHHHHHHH
Confidence 346789999999999999999999987652 3444444433 33444555554
No 402
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.36 E-value=0.37 Score=50.59 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=24.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..++++.|.|++|||||+.+.+++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 44578999999999999988888877654
No 403
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.32 E-value=0.51 Score=54.26 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=43.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEe
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVR 94 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr 94 (901)
+.-++-|.||||||+.+...|.+- +.+. +|+.|.+.||-|++..+...+..+ .|-|-|.
T Consensus 33 ~~QtLLGvTGSGKTfT~AnVI~~~------~rPt--LV~AhNKTLAaQLy~Efk~fFP~N---aVEYFVS 91 (663)
T COG0556 33 KHQTLLGVTGSGKTFTMANVIAKV------QRPT--LVLAHNKTLAAQLYSEFKEFFPEN---AVEYFVS 91 (663)
T ss_pred eeeEEeeeccCCchhHHHHHHHHh------CCCe--EEEecchhHHHHHHHHHHHhCcCc---ceEEEee
Confidence 567788999999998887777542 2333 344599999999999998887654 3444443
No 404
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.29 E-value=2.1 Score=48.77 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=31.4
Q ss_pred CceEEEEecCcccCcc---hhHHHHHHHHHHhhCCCceEEEeccCCCH------HHHHhhhCCCcEEeeC
Q 046397 125 GVTHVIVDEVHERGMN---EDFLLIVLKDLLSRRPELRLVLMSATLDA------ELFSSYFGGATVINIP 185 (901)
Q Consensus 125 ~~~~IIIDE~HeR~~~---~d~ll~~lk~ll~~~~~~kiIlmSATl~~------~~f~~yf~~~~~i~i~ 185 (901)
++++++||.++-..-. ...+...+..+..... ++|+.|...+. +.+.+-|...-++.+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~ 242 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIE 242 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCCCchhhccccHHHHHHHhceeEEeeC
Confidence 7899999999943222 2333344444433322 66666654433 2445555544444444
No 405
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.27 E-value=1.4 Score=48.87 Aligned_cols=33 Identities=36% Similarity=0.512 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcC---CeEEEEcCCCChHHHHHHHHH
Q 046397 13 EKNRLLTAISQN---QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 13 ~q~~il~~i~~~---~~viI~~~TGsGKTtq~p~~i 45 (901)
..+++...+.++ +..++.||-|+|||+.+-.+.
T Consensus 12 ~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a 47 (313)
T PRK05564 12 IKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIA 47 (313)
T ss_pred HHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHH
Confidence 344566666555 356899999999998776665
No 406
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=91.16 E-value=0.23 Score=61.55 Aligned_cols=118 Identities=21% Similarity=0.133 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEE
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYK 92 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~ 92 (901)
|--+++-.+.=++--|....||=|||+.+.++++-.++. |..+.|+-+ .--||.-=++.+...+ .-+|-+||.-
T Consensus 140 ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~---G~gVHvVTv--NDYLA~RDaewm~p~y-~flGLtVg~i 213 (1025)
T PRK12900 140 YDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT---GRGVHVVTV--NDYLAQRDKEWMNPVF-EFHGLSVGVI 213 (1025)
T ss_pred cchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc---CCCcEEEee--chHhhhhhHHHHHHHH-HHhCCeeeee
Confidence 334577777666767899999999998887776655543 344444432 2223332233222221 2346666643
Q ss_pred Eec----ccccCCCceEEEEcHH-----HHHHHHhcCC---CCCCceEEEEecCcc
Q 046397 93 VRL----EGMKGRDTRLLFCTTG-----ILLRRLLVDR---NLKGVTHVIVDEVHE 136 (901)
Q Consensus 93 vr~----e~~~~~~t~Ii~~T~g-----~Llr~L~~~~---~l~~~~~IIIDE~He 136 (901)
... +....-.++|+|+|.. .|...+..++ -...+.+.|||||+.
T Consensus 214 ~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 214 LNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred CCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 211 1112236899999975 3333333333 357788999999994
No 407
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.13 E-value=0.47 Score=53.87 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=24.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..+..++|.|++|+||||...+++.+..
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999886544
No 408
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.08 E-value=1.3 Score=46.72 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=34.4
Q ss_pred HHHHcCC-eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 19 TAISQNQ-VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 19 ~~i~~~~-~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
..+..++ .+.++|+-|||||+..= .+++.. ..+..+.|++-.|+- ....+.+++..+.
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~---~~d~~~~v~i~~~~~-s~~~~~~ai~~~l 103 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASL---NEDQVAVVVIDKPTL-SDATLLEAIVADL 103 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhc---CCCceEEEEecCcch-hHHHHHHHHHHHh
Confidence 3456677 89999999999996554 444433 233445555544553 3344455554443
No 409
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=91.01 E-value=0.71 Score=44.52 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHH
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQ 40 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq 40 (901)
+...++++-.....+..|+|.|++|+||++.
T Consensus 7 ~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 7 MRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 4556777777777888999999999999953
No 410
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.89 E-value=0.41 Score=52.72 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHH
Q 046397 14 KNRLLTAI-SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISA 70 (901)
Q Consensus 14 q~~il~~i-~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la 70 (901)
+.+++..+ ....+++|+|.|||||||.+-.+... + ...-+|+|++-+.+|-
T Consensus 162 ~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~--i----~~~eRvItiEDtaELq 213 (355)
T COG4962 162 AAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGF--I----DSDERVITIEDTAELQ 213 (355)
T ss_pred HHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc--C----CCcccEEEEeehhhhc
Confidence 33444444 44459999999999999876443322 1 1122889987776654
No 411
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.84 E-value=1 Score=51.38 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 19 TAISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 19 ~~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
+.+.++.+++..||+|+|||..+...-..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 56788999999999999999666544333
No 412
>PRK04328 hypothetical protein; Provisional
Probab=90.57 E-value=0.54 Score=50.39 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=29.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
..+..++|.|++|||||+...+++.+.+. +|..+..+-+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEe
Confidence 35789999999999999999999987642 3445544443
No 413
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.54 E-value=1 Score=50.29 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=16.5
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+++.||+|+|||+.+-.+
T Consensus 52 ~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CcEEEECCCCccHHHHHHHH
Confidence 57999999999999766543
No 414
>PRK05973 replicative DNA helicase; Provisional
Probab=90.53 E-value=0.54 Score=49.82 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
+++..-+..++.++|.|++|+|||+...+++.+.+. .|..+.++-.. +...++.+|.
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---~Ge~vlyfSlE---es~~~i~~R~ 111 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---SGRTGVFFTLE---YTEQDVRDRL 111 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEEe---CCHHHHHHHH
Confidence 445556678899999999999999999999987652 24444343322 2234555555
No 415
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.53 E-value=0.55 Score=50.63 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=35.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
+..+.+++|.|++|||||+...||+.+.+- .|.+|..+- +.+...++.+..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---~ge~vlyvs---~~e~~~~l~~~~ 70 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAR---EGEPVLYVS---TEESPEELLENA 70 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHh---cCCcEEEEE---ecCCHHHHHHHH
Confidence 457899999999999999999999998763 355554443 334444444444
No 416
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.49 E-value=2.2 Score=54.14 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=58.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.++++.||||+|||+.+-. +.+.... .+.. .+.+ ..-.... ...++...|.+. +.+||..
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~-La~~l~~--~~~~-~i~~--d~s~~~~--~~~~~~l~g~~~-g~~g~~~----------- 655 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKA-LAEFLFD--DEDA-MVRI--DMSEYME--KHSVARLIGAPP-GYVGYEE----------- 655 (852)
T ss_pred eEEEEEcCCCCCHHHHHHH-HHHHhcC--CCCc-EEEE--echhhcc--cchHHHhcCCCC-CccCccc-----------
Confidence 3688999999999965543 3333321 1111 2222 1111111 112223333332 2444421
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC--------CCce--EEEeccCCCHHHHHh
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR--------PELR--LVLMSATLDAELFSS 174 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~--------~~~k--iIlmSATl~~~~f~~ 174 (901)
.|.|...+...| +++|++||++. +..+....++.-+-..+ -+++ +|+||..+..+.+.+
T Consensus 656 -----~g~l~~~v~~~p----~~vlllDeiek--a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~ 724 (852)
T TIGR03346 656 -----GGQLTEAVRRKP----YSVVLFDEVEK--AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQE 724 (852)
T ss_pred -----ccHHHHHHHcCC----CcEEEEecccc--CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhh
Confidence 134444444333 47999999996 55555444443321110 1233 566777776665554
Q ss_pred hh
Q 046397 175 YF 176 (901)
Q Consensus 175 yf 176 (901)
.+
T Consensus 725 ~~ 726 (852)
T TIGR03346 725 LA 726 (852)
T ss_pred hc
Confidence 43
No 417
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.43 E-value=0.38 Score=51.98 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=22.9
Q ss_pred HHHHHHHH-HHH-cCCeEEEEcCCCChHHHHHHHHH
Q 046397 12 KEKNRLLT-AIS-QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 12 ~~q~~il~-~i~-~~~~viI~~~TGsGKTtq~p~~i 45 (901)
..+.+.+. .+. .+..++|+|+|||||||.+-.++
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHH
Confidence 33444444 444 34579999999999998875443
No 418
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.37 E-value=1.8 Score=48.13 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
-+.+.+...+...++.++|||++|. ++....-.+||.+-.-.++..+|+.|..
T Consensus 95 ~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 95 QCNRLAQESSQLNGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHHHhhCcccCCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3344444556778899999999997 4555555566655443344555555554
No 419
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.22 E-value=3.5 Score=46.21 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=57.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHH---HHHHhCCccCcEeeEEEecccc--cCCC
Q 046397 28 IISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSER---VASERGEKLGESVGYKVRLEGM--KGRD 102 (901)
Q Consensus 28 iI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~r---va~e~~~~~g~~vGy~vr~e~~--~~~~ 102 (901)
++.++.|+|||+.....++..++.... ...++++.....+...+... +...... .. ...+.-..+.. ....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--GRRVIIASTYRQARDIFGRFWKGIIELLPS-WF-EIKFNEWNDRKIILPNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----EEEEEESSHHHHHHHHHHHHHHHHTS-T-TT-S--EEEE-SSEEEETTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hc-CcccccCCCCcEEecCc
Confidence 578999999999988887777654332 23555554444444443332 2111222 11 11111111111 1244
Q ss_pred ceEEEEcHHH--HHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 103 TRLLFCTTGI--LLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 103 t~Ii~~T~g~--Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
..|.+.+.+. -...+.. ..++.||+||+-. +..+.....+............+..|-|.
T Consensus 77 ~~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp -EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred eEEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 5577777432 1122232 5678999999764 33444555555555544444333445544
No 420
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=89.99 E-value=1.6 Score=49.61 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHH
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++|....-.+..|+|.|+||+||+..+-.
T Consensus 90 ~~eqik~~ap~~~~vLi~GetGtGKel~A~~ 120 (403)
T COG1221 90 LREQIKAYAPSGLPVLIIGETGTGKELFARL 120 (403)
T ss_pred HHHHHHhhCCCCCcEEEecCCCccHHHHHHH
Confidence 3444444445678999999999999965543
No 421
>PHA00149 DNA encapsidation protein
Probab=89.98 E-value=4.4 Score=43.50 Aligned_cols=142 Identities=17% Similarity=0.238 Sum_probs=80.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchH-HHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCceEE
Q 046397 28 IISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRR-ISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLL 106 (901)
Q Consensus 28 iI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr-~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~Ii 106 (901)
+|.|.-|-|||.++--.++++.+..+. ..+.+--.. ++.. ...-++.+.-+.... -+.|......-..-.|-
T Consensus 21 fviG~RgiGKTya~k~~~~k~~i~kge----qfiYLRr~k~El~~-k~~Ff~d~~~~~~~~--~F~Vkg~ki~~~~k~ig 93 (331)
T PHA00149 21 FVIGARGIGKTYALKKYLIKRFIKKGE----QFIYLRRYKSELKK-KSKFFADIAQEFPNT--EFEVKGRKIYIKGKLIG 93 (331)
T ss_pred EEEeccccchhhHHHHHHHHHHHhcCc----EEEEEEecchhhhh-hhhhhHHHHHhCCCC--ceEEEccEEEEcCeEEE
Confidence 566999999999999998888876543 344421111 2211 233444444332211 11121111111122344
Q ss_pred EEcHHHHHHHHhcCCCCCCceEEEEecCcc-cC------cchhHHHHHHHHHHhhCCCceEEEeccCCC-HHHHHhhhC
Q 046397 107 FCTTGILLRRLLVDRNLKGVTHVIVDEVHE-RG------MNEDFLLIVLKDLLSRRPELRLVLMSATLD-AELFSSYFG 177 (901)
Q Consensus 107 ~~T~g~Llr~L~~~~~l~~~~~IIIDE~He-R~------~~~d~ll~~lk~ll~~~~~~kiIlmSATl~-~~~f~~yf~ 177 (901)
+.-|=.-...+. .+...++.+|++||+-. ++ -..+.++.++..+-+.+.+++++.+|-... .+-+-.||+
T Consensus 94 y~i~LS~~q~~K-s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 94 YAIPLSTWQALK-SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred EEEehhhHHhhc-ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 554433333332 34678899999999983 21 244578888888888899999999987642 223444554
No 422
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.82 E-value=2 Score=53.03 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=16.9
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..+++.||+|+||||.+-.+.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999997765443
No 423
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.81 E-value=0.29 Score=50.47 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=16.5
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+|||||||||.+-..
T Consensus 2 GlilI~GptGSGKTTll~~l 21 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999887543
No 424
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.73 E-value=0.29 Score=45.75 Aligned_cols=19 Identities=47% Similarity=0.789 Sum_probs=15.6
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
+++|+|++||||||.+-..
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 5799999999999766443
No 425
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.71 E-value=1.2 Score=48.99 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=19.0
Q ss_pred HHHcC--CeEEEEcCCCChHHHHHHHHH
Q 046397 20 AISQN--QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 20 ~i~~~--~~viI~~~TGsGKTtq~p~~i 45 (901)
.|++| ..+|+.||.|+||||.+-+.+
T Consensus 156 ~ieq~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 156 LIEQNRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred HHHcCCCCceEEecCCCCchHHHHHHHH
Confidence 34444 478999999999998764443
No 426
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=89.71 E-value=0.47 Score=59.13 Aligned_cols=118 Identities=22% Similarity=0.148 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEE
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYK 92 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~ 92 (901)
|--+++-.+.=++--|..+.||=|||+.+.++++-.++. |+.+.|+ | ..--||.-=++.+...+ ..+|-+||.-
T Consensus 171 yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---GkgVHvV-T-VNDYLA~RDaewmgply-~fLGLsvg~i 244 (1112)
T PRK12901 171 YDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---GNGVHVV-T-VNDYLAKRDSEWMGPLY-EFHGLSVDCI 244 (1112)
T ss_pred cchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---CCCcEEE-E-echhhhhccHHHHHHHH-HHhCCceeec
Confidence 344677777777777999999999998887776655543 3344444 4 22233322222222211 2345566643
Q ss_pred Eec-----ccccCCCceEEEEcHHH-----HHHHHhcCC---CCCCceEEEEecCcc
Q 046397 93 VRL-----EGMKGRDTRLLFCTTGI-----LLRRLLVDR---NLKGVTHVIVDEVHE 136 (901)
Q Consensus 93 vr~-----e~~~~~~t~Ii~~T~g~-----Llr~L~~~~---~l~~~~~IIIDE~He 136 (901)
... +.+..-.++|+|+|..- |.+.+..++ ....+.+.|||||+.
T Consensus 245 ~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 245 DKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred CCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 221 11122368999999753 333333222 456788999999994
No 427
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.60 E-value=0.71 Score=52.31 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=25.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
..+..++|+|||||||||.+-. +++...+. ....+|+.+.-.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~a-l~~~i~~~--~~~~~IvtiEdp 188 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAAS-IYQHCGET--YPDRKIVTYEDP 188 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHH-HHHHHHhc--CCCceEEEEecC
Confidence 3567889999999999987743 44443221 112356655433
No 428
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.54 E-value=1.2 Score=55.54 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.+.|.+++.. ....++|.|..|||||+.+..-+...+ ....-.+-+|+++.-|+-+|..+.+|+.+..+.
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li-~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------ 75 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLI-AEKNVAPWNILAITFTNKAAREMKERVEKLLGP------ 75 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHH-HcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc------
Confidence 44667777765 346688999999999988776665443 222223346888889999999999999765432
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHhcC-CC-CC-CceEEEEecCcc
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-RN-LK-GVTHVIVDEVHE 136 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-~~-l~-~~~~IIIDE~He 136 (901)
...++.++|-..+...+... .. +. .-..-|+|+...
T Consensus 76 -----------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 -----------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred -----------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 11357889976555444322 11 10 112347777663
No 429
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.39 E-value=2.1 Score=50.02 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=22.1
Q ss_pred HHHHHHHcC---CeEEEEcCCCChHHHHHHHHHH
Q 046397 16 RLLTAISQN---QVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 16 ~il~~i~~~---~~viI~~~TGsGKTtq~p~~il 46 (901)
.+...+..+ +..++.||.|+||||.+-.+.-
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 344455554 3578999999999988766554
No 430
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=2.6 Score=46.95 Aligned_cols=133 Identities=19% Similarity=0.259 Sum_probs=81.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|=-|+||||....+.... ..+|..+.++|.-.-|+.|....+..+..-+.++.. .|. .
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~---kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--syt--------e--- 165 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYY---KKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--SYT--------E--- 165 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHH---HhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe--ccc--------c---
Confidence 588899999999999988876543 357788889998888888876555554443333211 110 0
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCC--HHHHHhhhC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLD--AELFSSYFG 177 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~--~~~f~~yf~ 177 (901)
+-|-.+...-.....-+++++||+|=.-.+ -...-|..-++++.+ ..|+.-|..|-|++- ++..+.-|.
T Consensus 166 ---~dpv~ia~egv~~fKke~fdvIIvDTSGRh-~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 166 ---ADPVKIASEGVDRFKKENFDVIIVDTSGRH-KQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred ---cchHHHHHHHHHHHHhcCCcEEEEeCCCch-hhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 011122221111223468999999998743 333344444555444 568888889999983 334444443
No 431
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=2.3 Score=52.19 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=64.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+.+..||||.|||..+-+. .+.++. +. ...|-+ -- +=.+-...|+...|.+. ++|||...
T Consensus 522 gsFlF~GPTGVGKTELAkaL-A~~Lfg-~e--~aliR~--DM--SEy~EkHsVSrLIGaPP-GYVGyeeG---------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKAL-AEALFG-DE--QALIRI--DM--SEYMEKHSVSRLIGAPP-GYVGYEEG---------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHHHH-HHHhcC-CC--ccceee--ch--HHHHHHHHHHHHhCCCC-CCceeccc----------
Confidence 37888999999999555443 333321 11 112222 11 11112234555566554 47888642
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC---------CCce--EEEeccCCCHHHHH
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR---------PELR--LVLMSATLDAELFS 173 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~---------~~~k--iIlmSATl~~~~f~ 173 (901)
|.|.....++ -|++|.+||+.. .+.|++-.+|.- +..- -+++ +|+||.-+-.+.+.
T Consensus 583 ------G~LTEaVRr~----PySViLlDEIEK--AHpdV~nilLQV-lDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~ 649 (786)
T COG0542 583 ------GQLTEAVRRK----PYSVILLDEIEK--AHPDVFNLLLQV-LDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEIL 649 (786)
T ss_pred ------cchhHhhhcC----CCeEEEechhhh--cCHHHHHHHHHH-hcCCeeecCCCCEEecceeEEEEecccchHHHH
Confidence 2333344433 389999999986 556655444332 2210 1233 78888887766655
Q ss_pred hh
Q 046397 174 SY 175 (901)
Q Consensus 174 ~y 175 (901)
+.
T Consensus 650 ~~ 651 (786)
T COG0542 650 RD 651 (786)
T ss_pred hh
Confidence 54
No 432
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=89.20 E-value=3.6 Score=44.77 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=75.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHH----HHHHHHHHHHHHhCCccCcEeeEEEecccc
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRI----SAMSVSERVASERGEKLGESVGYKVRLEGM 98 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~----la~qva~rva~e~~~~~g~~vGy~vr~e~~ 98 (901)
++-.-+|.|.-|-|||.++--.++++.++.+. ..+++--... ++....+.+++++...--...|-.+-.+
T Consensus 16 ~~~~~~viG~RgiGKtya~k~~~i~df~~~G~----qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk~~k~~id-- 89 (333)
T PF05894_consen 16 DRILNFVIGARGIGKTYALKKKLIKDFIEYGE----QFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVKGNKIYID-- 89 (333)
T ss_pred cceEEEEEecccccchhHHHHHHHHHHHhcCC----EEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEEccEEEEC--
Confidence 33444667999999999999998998887553 3333211111 1222333444443221111222222111
Q ss_pred cCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCc-ccCc------chhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 99 KGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVH-ERGM------NEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 99 ~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~H-eR~~------~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
.-.|-+.+|=.-... .......++.+||+||+- |++- ..+.|+.++..+-+.+.+++++.+|--
T Consensus 90 ---gk~~g~~~~Ls~~q~-~Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~Na 160 (333)
T PF05894_consen 90 ---GKLIGYFIPLSGWQK-LKSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSNA 160 (333)
T ss_pred ---CeEEEEEEecchhhh-cccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEecc
Confidence 122333333111111 223478899999999998 5432 234577777777788899999999874
No 433
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.20 E-value=1.8 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.845 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
++.+++.||+||||||.+-...
T Consensus 110 ~~illL~GP~GsGKTTl~~~la 131 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILS 131 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998775544
No 434
>PRK13695 putative NTPase; Provisional
Probab=89.12 E-value=2.2 Score=42.77 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=16.3
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|+|+.|+||||.+-..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999998777543
No 435
>PRK10436 hypothetical protein; Provisional
Probab=88.96 E-value=0.54 Score=54.83 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=22.5
Q ss_pred HHHHHHHHH-H-HcCCeEEEEcCCCChHHHHHHHH
Q 046397 12 KEKNRLLTA-I-SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 12 ~~q~~il~~-i-~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+.+.+.. + ..+..++|+|||||||||.....
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~ 238 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSA 238 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHH
Confidence 334444443 3 35678999999999999877443
No 436
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.96 E-value=1.6 Score=43.86 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 27 VIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
++|.|++|||||+.+.+++.+ .+.+ ++++.-.+..-..+.+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~--~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGP--VTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCC--eEEEEccCcCCHHHHHHHHH
Confidence 689999999999998888754 2222 33332333445566677644
No 437
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.93 E-value=1.6 Score=53.35 Aligned_cols=138 Identities=25% Similarity=0.374 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHc---CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe-------cchHHHHHHHHHHHHHH
Q 046397 11 YKEKNRLLTAISQ---NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT-------QPRRISAMSVSERVASE 80 (901)
Q Consensus 11 ~~~q~~il~~i~~---~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt-------qPrr~la~qva~rva~e 80 (901)
+-.+..+++.+.. .+.++|++|-|+||||.+.++.. .. ..+. .|... +|-|-. ..+..-+.+.
T Consensus 21 ~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~-~~---~~~~--~v~Wlslde~dndp~rF~-~yLi~al~~~ 93 (894)
T COG2909 21 YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE-LA---ADGA--AVAWLSLDESDNDPARFL-SYLIAALQQA 93 (894)
T ss_pred ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH-hc---Cccc--ceeEeecCCccCCHHHHH-HHHHHHHHHh
Confidence 3446677777764 47899999999999999999975 21 1111 12221 132211 1111111111
Q ss_pred hCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcC-CCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-Cc
Q 046397 81 RGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD-RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-EL 158 (901)
Q Consensus 81 ~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~-~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~ 158 (901)
.. ..|+... .+ ...+--+ .-..+++.+..+ ....+--++|+|+.|- +....+-.-++.+++..| ++
T Consensus 94 ~p-~~~~~a~-~l-------~q~~~~~-~l~~l~~~L~~Ela~~~~pl~LVlDDyHl--i~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 94 TP-TLGDEAQ-TL-------LQKHQYV-SLESLLSSLLNELASYEGPLYLVLDDYHL--ISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred Cc-cccHHHH-HH-------HHhcccc-cHHHHHHHHHHHHHhhcCceEEEeccccc--cCcccHHHHHHHHHHhCCCCe
Confidence 11 1111111 00 0001111 112233333321 1223335899999995 566667777888887654 68
Q ss_pred eEEEeccCC
Q 046397 159 RLVLMSATL 167 (901)
Q Consensus 159 kiIlmSATl 167 (901)
.+|+.|=+-
T Consensus 162 ~lvv~SR~r 170 (894)
T COG2909 162 TLVVTSRSR 170 (894)
T ss_pred EEEEEeccC
Confidence 888888764
No 438
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.92 E-value=0.8 Score=50.79 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=24.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..+..+.|.||+||||||...+++.+..
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34477999999999999999999887754
No 439
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.90 E-value=2.3 Score=53.05 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
..++++.||+|+|||+.+-..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 468899999999999665433
No 440
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.89 E-value=0.59 Score=61.48 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
+.|.+++. ..+++++|+|.-|||||+.+..-++..+.. + ...-.|+|+.=|+.+|..+.+|+.+.....+...-..
T Consensus 4 ~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~-~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 4 DEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILR-G-VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred HHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhc-C-CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 45666666 368899999999999999888877765542 2 1223477777999999999999987765433221110
Q ss_pred EEecccccCCCceEEEEcHHHHHHHHhc-CCCCCCc--eEEEEecCcccCcchhHHHHHHH
Q 046397 92 KVRLEGMKGRDTRLLFCTTGILLRRLLV-DRNLKGV--THVIVDEVHERGMNEDFLLIVLK 149 (901)
Q Consensus 92 ~vr~e~~~~~~t~Ii~~T~g~Llr~L~~-~~~l~~~--~~IIIDE~HeR~~~~d~ll~~lk 149 (901)
.++......-...-++|-..+...+.. ....-++ .+=|.||....-+..+.+-.++.
T Consensus 80 -~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e 139 (1232)
T TIGR02785 80 -KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFE 139 (1232)
T ss_pred -HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHH
Confidence 011111111234567887655544433 3221111 34468887643333344433333
No 441
>PF12846 AAA_10: AAA-like domain
Probab=88.87 E-value=0.52 Score=51.41 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAM 71 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~ 71 (901)
|.+++|.|+||||||+.+-..+ ...+..+ ..+++.=|......
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~-~~~~~~g----~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLL-EQLIRRG----PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHH-HHHHHcC----CCEEEEcCCchHHH
Confidence 5689999999999998777554 4444332 34666566654443
No 442
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=2.1 Score=49.39 Aligned_cols=106 Identities=25% Similarity=0.452 Sum_probs=60.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCceE
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRL 105 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 105 (901)
.+++.||.|||||+.+.+..+... -+..+|+ .|....-.+-..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~-----FPFvKii--Spe~miG~sEsaKc~~-------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSD-----FPFVKII--SPEDMIGLSESAKCAH-------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcC-----CCeEEEe--ChHHccCccHHHHHHH--------------------------
Confidence 589999999999988877766532 2333443 3664433322222211
Q ss_pred EEEcHHHHHHHHhcCCCCCCceEEEEecCccc------C-cchhHHHHHHHHHHhhCCCc--eEEEeccCCCHHHH
Q 046397 106 LFCTTGILLRRLLVDRNLKGVTHVIVDEVHER------G-MNEDFLLIVLKDLLSRRPEL--RLVLMSATLDAELF 172 (901)
Q Consensus 106 i~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR------~-~~~d~ll~~lk~ll~~~~~~--kiIlmSATl~~~~f 172 (901)
++....|..-+.+++||||++..- | -.+...+..|.-++++.|.- |++++.-|-..+.+
T Consensus 587 --------i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL 654 (744)
T KOG0741|consen 587 --------IKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL 654 (744)
T ss_pred --------HHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHH
Confidence 122223334556788999988720 1 13445666677777766543 67666666444433
No 443
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=88.49 E-value=0.74 Score=46.55 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=25.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
+..++.||-+||||+.+.+-+..... .+. ++++..|.
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~---~~~--~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEI---AGK--KVLVFKPA 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH---TT---EEEEEEES
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHh---CCC--eEEEEEec
Confidence 45789999999999998887755432 222 45555575
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.15 E-value=0.3 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=18.4
Q ss_pred HHcCCeEEEEcCCCChHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~ 41 (901)
+.++.+++|+||.||||||.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999754
No 445
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.13 E-value=1.1 Score=47.18 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=24.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..+..++|.|++|+|||+.+.+++.+.+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 45678999999999999999888887654
No 446
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.11 E-value=0.82 Score=54.03 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEec
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQ 64 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvtq 64 (901)
+-.+..++|.|++||||||.+.||+.+.+.+ .|..|..+...
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~e 59 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFE 59 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEe
Confidence 3467899999999999999999999876532 13455555443
No 447
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.05 E-value=2.4 Score=42.78 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
+..++.+.|.|+.||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQL 47 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 35788999999999999975543
No 448
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.03 E-value=2.2 Score=53.20 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=15.2
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
++++.||||+|||+.+-.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred eEEEECCCCccHHHHHHHH
Confidence 5799999999999655443
No 449
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.00 E-value=1.6 Score=42.87 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+++.+.|.|++|+||||.+-.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~ 44 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRA 44 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 5678999999999999975533
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.97 E-value=0.66 Score=51.41 Aligned_cols=24 Identities=50% Similarity=0.684 Sum_probs=20.0
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+..+.+++|+|+|||||||.+-.
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~a 163 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKS 163 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999999987643
No 451
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=87.85 E-value=0.32 Score=56.90 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
-|.....-.|.-.++.+.||||||- +.+..+-++||.+-.-.+++++| =||-
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHM--LS~~afNALLKTLEEPP~hV~FI--lATT 157 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHM--LSKQAFNALLKTLEEPPSHVKFI--LATT 157 (515)
T ss_pred HHHHHhccCCccccceEEEEecHHh--hhHHHHHHHhcccccCccCeEEE--EecC
Confidence 3444555567788999999999996 55566666676654433344444 4553
No 452
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.78 E-value=0.73 Score=52.07 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
|-.+|..+|.||.|+||||.+-. |............+.|+++.-+..-+..+.+.+
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~-Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsI 221 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQN-IANSITTNHPEVHLIVLLIDERPEEVTDMQRSV 221 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHH-HHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHh
Confidence 45789999999999999975444 555443322233344555555533344443433
No 453
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=87.78 E-value=3.8 Score=49.13 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
...+.+-.....+..|+|.||||||||+.+ .+|.+
T Consensus 207 ~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA-~~ih~ 241 (534)
T TIGR01817 207 QVVDQARVVARSNSTVLLRGESGTGKELIA-KAIHY 241 (534)
T ss_pred HHHHHHHHHhCcCCCEEEECCCCccHHHHH-HHHHH
Confidence 344555555567778999999999999554 34443
No 454
>PRK13764 ATPase; Provisional
Probab=87.75 E-value=0.92 Score=54.43 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 16 RLLTAI-SQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 16 ~il~~i-~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
++++.+ ..+..++|+|+|||||||.+ +.+++.+
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 445554 34678999999999999876 4455444
No 455
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=87.64 E-value=2.5 Score=47.07 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=77.6
Q ss_pred hcCCCcHHHHHHHHHHHHcCC------eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeE---EEEecchHHHHHHHHH
Q 046397 5 RRNLPAYKEKNRLLTAISQNQ------VVIISGETGCGKTTQVPQFILESEITSVRGAVCS---IICTQPRRISAMSVSE 75 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~------~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~---IlvtqPrr~la~qva~ 75 (901)
-...|..+.|-..+..+..++ .++|-|.+|+|||..+-+++-.. +-...- +=|. -.+++-.++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecf-t~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECF-TYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhc-cHHHHHHHHHH
Confidence 356788888888888887664 34899999999997766665432 111111 1111 34455555555
Q ss_pred HHHHHhCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcc-cCcchhHHHHHHHHHHhh
Q 046397 76 RVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHE-RGMNEDFLLIVLKDLLSR 154 (901)
Q Consensus 76 rva~e~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~He-R~~~~d~ll~~lk~ll~~ 154 (901)
.+. ....-|..++ .+...+++--.++...........--+||+|-++. |++++-.+..+++--.-.
T Consensus 79 ~~~------~~d~dg~~~~-------~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 79 KSQ------LADKDGDKVE-------GDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL 145 (438)
T ss_pred Hhc------cCCCchhhhh-------hHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh
Confidence 441 0111111111 11122233222222211111233456899999994 556665555544422222
Q ss_pred CCCceEEEeccCCCHHHHH
Q 046397 155 RPELRLVLMSATLDAELFS 173 (901)
Q Consensus 155 ~~~~kiIlmSATl~~~~f~ 173 (901)
..+.-.|++|+++....+-
T Consensus 146 ~~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 146 NEPTIVIILSAPSCEKQYL 164 (438)
T ss_pred CCCceEEEEeccccHHHhh
Confidence 2234467789998665433
No 456
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.57 E-value=0.94 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile 47 (901)
.+.+++.||+|||||+.+ ..+..
T Consensus 216 p~GILLyGPPGTGKT~LA-KAlA~ 238 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA-KAVAN 238 (512)
T ss_pred CcceEEECCCCCcHHHHH-HHHHH
Confidence 356999999999999643 34433
No 457
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.57 E-value=3.5 Score=40.08 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p 42 (901)
+..++.+.|.|+.||||||.+-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999997653
No 458
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.52 E-value=2.1 Score=54.01 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=15.2
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
.++++||||+|||+.+-..
T Consensus 541 ~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999665443
No 459
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.51 E-value=0.68 Score=55.70 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=22.7
Q ss_pred cHHHHHHHHH-HHH-cCCeEEEEcCCCChHHHHHHH
Q 046397 10 AYKEKNRLLT-AIS-QNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 10 i~~~q~~il~-~i~-~~~~viI~~~TGsGKTtq~p~ 43 (901)
..+.+.+.+. .+. .+..++|+|||||||||....
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 3344333444 343 466889999999999988643
No 460
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.43 E-value=0.49 Score=53.28 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=20.7
Q ss_pred HHHHHH-cCCeEEEEcCCCChHHHHHHHH
Q 046397 17 LLTAIS-QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 17 il~~i~-~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+.+. .+..++|+|||||||||..-.+
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al 142 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASM 142 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHH
Confidence 334443 4678999999999999887543
No 461
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.41 E-value=3.3 Score=46.85 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC-CeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRG-AVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~-~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.+-+.+.|+.|+|||. +++..+..-.. .+.++ +--.-..++.+++.+..+..
T Consensus 62 ~~GlYl~G~vG~GKT~-----Lmd~f~~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~~~~------------------ 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM-----LMDLFYDSLPIKRKRRV----HFHEFMLDVHSRLHQLRGQD------------------ 114 (362)
T ss_pred CceEEEECCCCCchhH-----HHHHHHHhCCccccccc----cccHHHHHHHHHHHHHhCCC------------------
Confidence 5679999999999994 44444432222 22222 22345556666665554110
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHH-HHHHHHhhCCCceEEEeccCCCHHHH
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLI-VLKDLLSRRPELRLVLMSATLDAELF 172 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~-~lk~ll~~~~~~kiIlmSATl~~~~f 172 (901)
+- -+ .+.+.+ ..+..+|.+||+|-.++..-.++. ++..+.. ..+-+|..|-+.+.+..
T Consensus 115 -~~---l~-~va~~l-----~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~--~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 115 -DP---LP-QVADEL-----AKESRLLCFDEFQVTDIADAMILKRLFEALFK--RGVVLVATSNRPPEDLY 173 (362)
T ss_pred -cc---HH-HHHHHH-----HhcCCEEEEeeeeccchhHHHHHHHHHHHHHH--CCCEEEecCCCChHHHc
Confidence 00 11 122332 355679999999966555544444 4444433 46778888888766543
No 462
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.24 E-value=1.1 Score=55.54 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecch
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNI 352 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTni 352 (901)
.+.++++.+||..-+.++++.|..........+..+. +||.|+..+++.+++++.+|..+|+|+|+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 4588999999999999999999875433333344555 999999999999999999999999999984
No 463
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.16 E-value=0.52 Score=45.35 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=16.7
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
+++++|++||||||.+-.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57999999999998876554
No 464
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=86.99 E-value=0.5 Score=50.16 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=29.1
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEIT 51 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~ 51 (901)
+++.-+..++.++|+|+||+|||+.+.+++.+.+..
T Consensus 5 ~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 5 NLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred hhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 344456678899999999999999999988876643
No 465
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.76 E-value=2 Score=53.96 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=17.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
++..+++.||+|+|||+.+-..
T Consensus 346 ~~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3457999999999999665443
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.72 E-value=0.56 Score=47.26 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
++.++|.||+||||||.+-..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L 21 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKAL 21 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 467899999999999865443
No 467
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=86.67 E-value=0.44 Score=44.70 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=14.1
Q ss_pred EEEEcCCCChHHHHHHH
Q 046397 27 VIISGETGCGKTTQVPQ 43 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~ 43 (901)
|+|.|++||||||.+-.
T Consensus 1 I~i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred CEEECCCCCCHHHHHHH
Confidence 68999999999976543
No 468
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.65 E-value=1.5 Score=46.98 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=16.4
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+++.||+|-||||.+-..
T Consensus 53 DHvLl~GPPGlGKTTLA~II 72 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHII 72 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHH
Confidence 57999999999999766443
No 469
>PRK08760 replicative DNA helicase; Provisional
Probab=86.60 E-value=1.5 Score=51.72 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva 78 (901)
++.-+..++.++|.|.||.|||+.+.+++...+... +..+.++. --....|++.|+.
T Consensus 222 ~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fS---lEMs~~ql~~Rl~ 278 (476)
T PRK08760 222 MTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFS---MEMSASQLAMRLI 278 (476)
T ss_pred HhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEe---ccCCHHHHHHHHH
Confidence 344455678999999999999998888887655432 33333332 2233456666653
No 470
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=86.56 E-value=4.4 Score=48.25 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHH
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~ 41 (901)
....+++-.....+..|+|.|++|+||++.+
T Consensus 197 ~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 197 QQLKKEIEVVAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCccHHHHH
Confidence 3445555555667789999999999999554
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.45 E-value=1.5 Score=46.10 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=33.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
..+..++|.|++|+|||+...+++.+.+. .+..+..+-+ .....++.+++
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~---~g~~~~y~s~---e~~~~~l~~~~ 63 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLK---NGEKAMYISL---EEREERILGYA 63 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEC---CCCHHHHHHHH
Confidence 35789999999999999999988876542 3444444433 22345555554
No 472
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.41 E-value=1.5 Score=45.33 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=28.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
..++.+.|.||+|||||+...+++.+... .+..+..+-+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEC
Confidence 35789999999999999988888776542 2444444444
No 473
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.39 E-value=0.91 Score=49.30 Aligned_cols=25 Identities=32% Similarity=0.708 Sum_probs=20.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
+.+++.++++||||||||..+-.++
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHHhhh
Confidence 4678899999999999996655543
No 474
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.32 E-value=0.78 Score=54.06 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHH-H-cCCeEEEEcCCCChHHHHHHHH
Q 046397 10 AYKEKNRLLTAI-S-QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 10 i~~~q~~il~~i-~-~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+.+.+.+..+ . .+..++|+|||||||||..-..
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~ 262 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAA 262 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 334444444444 3 3457899999999999877443
No 475
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.12 E-value=0.79 Score=51.33 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=35.7
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
|.+-..--+.+.+...+...++.++|||++|. ++...--.+||.+-.-.++.-+|+.|.-
T Consensus 88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 88 LGVDAVREVTEKLYEHARLGGAKVVWLPDAAL--LTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEcchHh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 33333334555566667788899999999997 4555555556554333333445555443
No 476
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.08 E-value=1.6 Score=44.37 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=35.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-----CCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSV-----RGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-----~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
.+..++|.|++|+|||+.+.+++...+.... .....+++++. .-....++.+|+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~-~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYIS-LEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEE-SSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEe-ccCCHHHHHHHHHHHh
Confidence 5789999999999999999988887652110 01334566653 3333556777776554
No 477
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.06 E-value=1.7 Score=51.96 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=18.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++.+.|+||+||||||.+-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLML 380 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 5789999999999999986643
No 478
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=85.95 E-value=2.2 Score=52.28 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=85.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCC-----------C----CceEEEEecCCCCHHHHHhhcCCCCC----CCeE
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGD-----------P----TRVLLLTCHGSMASSEQRLIFDEPES----GVRK 345 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~-----------~----~~~~v~~lhs~l~~~eq~~i~~~f~~----g~~k 345 (901)
-+.+.|||-.+......+..+|......+. . .....+.+.|.....+|++.-+.|.. ..+-
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 467999999888877777777753211100 0 11225678999999999988877753 2356
Q ss_pred EEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 346 IVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 346 IIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
.||+|-...-|||+=..+-||. ||...|.+.-. +.+=|+=|-|...|-..|||+.....+
T Consensus 1221 ~LISTRAGsLGiNLvAANRVII--------fDasWNPSyDt-------QSIFRvyRfGQtKPvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVII--------FDASWNPSYDT-------QSIFRVYRFGQTKPVYIYRFIAQGTME 1280 (1567)
T ss_pred EEEeeccCccccceeecceEEE--------EecccCCccch-------HHHHHHHhhcCcCceeehhhhhcccHH
Confidence 8999999999999988888876 66655554333 333566777778899999998766543
No 479
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=85.94 E-value=5 Score=43.86 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=74.2
Q ss_pred HHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHHHHHhh-------cCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 16 RLLTAI-SQNQVVIISGETGCGKTTQVPQFILESEITS-------VRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 16 ~il~~i-~~~~~viI~~~TGsGKTtq~p~~ile~~~~~-------~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
++++.. .++-+++|.|+.|.||||..++..+....-. ...+...++-..-.|+.+..-.+.|.+.++...++
T Consensus 80 ~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPad 159 (402)
T COG3598 80 QLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPAD 159 (402)
T ss_pred hhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHh
Confidence 444443 5566777889999999998877665433211 11122334444556666666666676667765544
Q ss_pred EeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCccc----CcchhHHHHHHHHHH--hhCCCceEE
Q 046397 88 SVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHER----GMNEDFLLIVLKDLL--SRRPELRLV 161 (901)
Q Consensus 88 ~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR----~~~~d~ll~~lk~ll--~~~~~~kiI 161 (901)
.-.... .+.......--+..| .|.++....-.-...++||||=.=.- +...|-...+++..- ...-++-||
T Consensus 160 vrn~dl--td~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIi 236 (402)
T COG3598 160 VRNMDL--TDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAII 236 (402)
T ss_pred hhheec--cccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEE
Confidence 322221 111111111112344 55555544434456778888865411 011122222222221 223456677
Q ss_pred EeccCC
Q 046397 162 LMSATL 167 (901)
Q Consensus 162 lmSATl 167 (901)
.++-|.
T Consensus 237 y~hHts 242 (402)
T COG3598 237 YIHHTS 242 (402)
T ss_pred EEeccc
Confidence 777764
No 480
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=85.92 E-value=1.1 Score=49.48 Aligned_cols=48 Identities=31% Similarity=0.486 Sum_probs=31.2
Q ss_pred HHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 16 RLLTAI----SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 16 ~il~~i----~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
++++.+ ....++.|+|++||||||.+-....... ..+..+.++-.-|.
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~---~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR---RRGLKVAVIAVDPS 73 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCC
Confidence 345554 3567899999999999987766554321 23455556555443
No 481
>CHL00176 ftsH cell division protein; Validated
Probab=85.87 E-value=3.6 Score=50.16 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.0
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+++.||+|+|||+.+-..
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999665443
No 482
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=85.83 E-value=6 Score=43.23 Aligned_cols=125 Identities=13% Similarity=0.153 Sum_probs=66.1
Q ss_pred HHHHHHHHcCC---eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeE
Q 046397 15 NRLLTAISQNQ---VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGY 91 (901)
Q Consensus 15 ~~il~~i~~~~---~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy 91 (901)
+++..++.+++ -.++.||.|+||++.+..+.. .++.... | .. ...+.. +. .-.+
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~-~llC~~~----------~--~~----c~~~~~--~~----HPD~ 63 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELAS-LILKETS----------P--EA----AYKISQ--KI----HPDI 63 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHH-HHhCCCC----------c--cH----HHHHhc--CC----CCCE
Confidence 35667777654 688999999999977665543 2222110 1 01 112210 00 0011
Q ss_pred E-EecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 92 K-VRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 92 ~-vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
. +.-+. ....|-+-...-+.+.+...|.-..+.++|||++|. +..+..-.+||.+-.-.++..+|+.|...
T Consensus 64 ~~i~p~~---~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~--mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 64 HEFSPQG---KGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADR--MTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred EEEecCC---CCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhh--cCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 1 11010 001132333333445555566778899999999997 55555566666554444455666666653
No 483
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.72 E-value=0.72 Score=55.31 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHH-HHHHHH
Q 046397 10 AYKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVS-ERVASE 80 (901)
Q Consensus 10 i~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva-~rva~e 80 (901)
..+|+.++++++... +.|++.+++-+|||+.+..++...+ ...++.+++++|+..+|.... +|+...
T Consensus 17 ~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i----~~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 17 RTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI----DQDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE----EeCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 457899999999765 5889999999999985544443322 123467899999999998765 555443
No 484
>PRK00300 gmk guanylate kinase; Provisional
Probab=85.72 E-value=0.64 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
..+..++|+||+||||||.+-..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALL 26 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999998665443
No 485
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=85.70 E-value=5.5 Score=37.27 Aligned_cols=95 Identities=26% Similarity=0.335 Sum_probs=47.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCceEE
Q 046397 27 VIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLL 106 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~Ii 106 (901)
++++|..|+||||........ +. ..+.+..++-+-| .++.+++. ...+..... +.. ........-.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~-l~--~~g~~V~~id~D~-----~~~~~~~~----~~~~~~~~~-i~~-g~~~~~~~g~ 67 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY-LA--EKGKPVLAIDADP-----DDLPERLS----VEVGEIKLL-LVM-GMGRPGGEGC 67 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HH--HCCCcEEEEECCc-----hhhHHHHh----hccCCceEE-EEe-cccccCCCCC
Confidence 689999999999876555433 22 2445566666666 33333332 222211110 100 0111112233
Q ss_pred EEcHHHHHHHHhcCCCCCCceEEEEecCc
Q 046397 107 FCTTGILLRRLLVDRNLKGVTHVIVDEVH 135 (901)
Q Consensus 107 ~~T~g~Llr~L~~~~~l~~~~~IIIDE~H 135 (901)
||-...+++.+...-....++++|+|=.-
T Consensus 68 ~~~~n~~~~~~l~~~~~~~~~~vivDt~a 96 (116)
T cd02034 68 YCPENALLNALLRHLVLTRDEQVVVDTEA 96 (116)
T ss_pred EehhhHHHHHHHHHeEccCCCEEEEecHH
Confidence 55553355554444345667788888543
No 486
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=85.69 E-value=0.99 Score=47.09 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..+..++|.|++|||||+...+++.+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999887654
No 487
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=85.66 E-value=1.1 Score=46.17 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=25.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
.++.+++|.|.||||||+.+-..+...+. ......+.++++-|.
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~ll~~l~~-~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTLLLSLAL-TYSPDDVQLYIIDPK 79 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHHHHHHHT-T--TTTEEEEEE-TT
T ss_pred CCCceEEEEcCCCCCccHHHHHHHHHHHH-HhcCCccEEEEEcCC
Confidence 34568999999999999777665554443 222345666666554
No 488
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.66 E-value=0.83 Score=50.64 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=23.4
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..++..+++++|+|+|||||||..-..
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnal 163 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNAL 163 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHH
Confidence 5667788999999999999999776443
No 489
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.47 E-value=0.56 Score=49.50 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=26.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEe
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICT 63 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvt 63 (901)
.+..-+||+|+|||||||.....+-.+ .+...+.|+-+
T Consensus 125 ~kRGLviiVGaTGSGKSTtmAaMi~yR----N~~s~gHIiTI 162 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTTMAAMIGYR----NKNSTGHIITI 162 (375)
T ss_pred ccCceEEEECCCCCCchhhHHHHhccc----ccCCCCceEEe
Confidence 466789999999999998876655432 33344556654
No 490
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.46 E-value=2.6 Score=42.14 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 578899999999999997553
No 491
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=85.46 E-value=1.2 Score=50.61 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=37.3
Q ss_pred ceEEEEecCcccCcchhHHHHHHHHHHh---hCCCceEEEeccCCC-HHHHHhhhCC
Q 046397 126 VTHVIVDEVHERGMNEDFLLIVLKDLLS---RRPELRLVLMSATLD-AELFSSYFGG 178 (901)
Q Consensus 126 ~~~IIIDE~HeR~~~~d~ll~~lk~ll~---~~~~~kiIlmSATl~-~~~f~~yf~~ 178 (901)
.=+||||-+.++.-..+++...+.+... ...-.+||++|.... ...+++.+.+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn 205 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPN 205 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCC
Confidence 4589999999887677777766655433 445578999998873 4466666544
No 492
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=85.43 E-value=2.3 Score=53.20 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHH--------cCCeEEEEcCCCChHHHHHHH
Q 046397 10 AYKEKNRLLTAIS--------QNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 10 i~~~q~~il~~i~--------~~~~viI~~~TGsGKTtq~p~ 43 (901)
....++.|++.+. .+..+++.||+|+|||+.+-.
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ 368 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQS 368 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHH
Confidence 3455667776554 356899999999999965533
No 493
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=85.43 E-value=0.51 Score=49.42 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=18.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p 42 (901)
+..+..+.|.||+||||||..-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678899999999999998653
No 494
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.20 E-value=1.2 Score=58.06 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=50.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
...+++++|.|..|||||..+.+-+++.++..+.-..-.|+|+..|+.+|..+.+||.+-..+
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 346789999999999999888888888777543223447888889999999999999766543
No 495
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=85.09 E-value=2.7 Score=47.07 Aligned_cols=66 Identities=27% Similarity=0.282 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHhcC------CCCCceeeeeccCCc----eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 812 NSKSQLQTLLTRAG------YAAPSYRTKQLKNGQ----FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 812 ~~~~~l~~~~~~~~------~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
+||+-||--..+.. -..|-|++..-++.- |.--|.|+|....---++|-||||++||+-|++=++.
T Consensus 428 dpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 428 DPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred CcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 68888886554432 347888885444332 9999999998888888999999999999999998885
No 496
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=85.04 E-value=15 Score=40.70 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEec----chHHHHHHHHHHHHHHhCCccCcEeeEEEecccc
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQ----PRRISAMSVSERVASERGEKLGESVGYKVRLEGM 98 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvtq----Prr~la~qva~rva~e~~~~~g~~vGy~vr~e~~ 98 (901)
+.+.+++.||-|||||+.+--.+.+ . + ..|....++=+- --+++...++...+.|.... +..+| +.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~-q-~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g------sf 117 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-I-Q-ENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG------SF 117 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-H-H-hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec------cc
Confidence 5678999999999999666555544 2 1 223333333222 24555666666666665422 11111 00
Q ss_pred cCCCceEEEEcHHHHHHHHhcCCCCCCc-eEEEEecCccc-C-cchhHHHHHHHHHHhhCCCceEEEeccCCCH
Q 046397 99 KGRDTRLLFCTTGILLRRLLVDRNLKGV-THVIVDEVHER-G-MNEDFLLIVLKDLLSRRPELRLVLMSATLDA 169 (901)
Q Consensus 99 ~~~~t~Ii~~T~g~Llr~L~~~~~l~~~-~~IIIDE~HeR-~-~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~ 169 (901)
.. +-..|+..|..+..-... -..|+||++-- . ...-.+..++......+.++-+|++|--+|.
T Consensus 118 te--------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 118 TE--------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred ch--------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 00 123556666655544444 45677888721 1 2222333334333334556778999988875
No 497
>PRK08233 hypothetical protein; Provisional
Probab=84.91 E-value=0.71 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
..++.|.|++||||||++-...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999886554
No 498
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.84 E-value=0.78 Score=44.05 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=15.6
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.|++.||+|+|||+.+-.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47999999999996654443
No 499
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=84.82 E-value=1.2 Score=49.37 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
..++..+..++.+++.|++|||||+.+-+....
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHH
Confidence 457777788899999999999999887766543
No 500
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=84.71 E-value=0.75 Score=44.41 Aligned_cols=18 Identities=33% Similarity=0.783 Sum_probs=14.6
Q ss_pred EEEEcCCCChHHHHHHHH
Q 046397 27 VIISGETGCGKTTQVPQF 44 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~~ 44 (901)
++|+|||||||||.+-..
T Consensus 2 i~i~GpsGsGKstl~~~L 19 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRL 19 (137)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999855444
Done!