Query 046397
Match_columns 901
No_of_seqs 598 out of 3299
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 20:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 4E-101 2E-105 940.7 60.6 629 2-708 87-727 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 4.3E-54 1.5E-58 527.3 37.0 524 9-602 30-626 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 9E-52 3.1E-56 505.4 39.8 500 9-592 25-595 (702)
4 2zj8_A DNA helicase, putative 100.0 7.8E-49 2.7E-53 480.7 34.3 446 9-538 23-537 (720)
5 3i4u_A ATP-dependent RNA helic 100.0 1.2E-48 4E-53 417.6 24.2 246 448-708 2-248 (270)
6 2z83_A Helicase/nucleoside tri 100.0 1.9E-38 6.6E-43 367.9 12.8 298 14-417 11-313 (459)
7 3l9o_A ATP-dependent RNA helic 100.0 3.9E-37 1.3E-41 388.4 25.4 375 6-418 181-598 (1108)
8 3o8b_A HCV NS3 protease/helica 100.0 5.3E-38 1.8E-42 371.8 16.0 302 2-419 210-516 (666)
9 2jlq_A Serine protease subunit 100.0 1.1E-37 3.9E-42 360.8 17.0 300 5-415 3-309 (451)
10 3eiq_A Eukaryotic initiation f 100.0 4.2E-37 1.4E-41 351.4 19.5 319 5-421 58-391 (414)
11 3pey_A ATP-dependent RNA helic 100.0 7E-36 2.4E-40 338.4 28.6 320 8-418 26-357 (395)
12 3fht_A ATP-dependent RNA helic 100.0 6.8E-36 2.3E-40 340.9 27.7 320 9-418 47-380 (412)
13 4f92_B U5 small nuclear ribonu 100.0 2.8E-36 9.6E-41 392.9 26.4 438 11-523 928-1450(1724)
14 4f92_B U5 small nuclear ribonu 100.0 2.6E-35 9E-40 383.8 31.9 451 10-533 80-630 (1724)
15 2db3_A ATP-dependent RNA helic 100.0 1.1E-34 3.8E-39 334.4 29.3 309 10-417 79-407 (434)
16 2ykg_A Probable ATP-dependent 100.0 1.7E-35 5.9E-40 361.5 22.7 412 8-443 12-552 (696)
17 4a4z_A Antiviral helicase SKI2 100.0 1.6E-35 5.5E-40 370.6 22.4 386 8-416 38-491 (997)
18 1s2m_A Putative ATP-dependent 100.0 1.4E-34 4.8E-39 329.3 27.8 311 10-420 44-368 (400)
19 2i4i_A ATP-dependent RNA helic 100.0 1.3E-34 4.4E-39 331.3 27.4 314 9-420 37-386 (417)
20 2whx_A Serine protease/ntpase/ 100.0 5.2E-36 1.8E-40 357.7 16.3 302 4-415 169-476 (618)
21 2xgj_A ATP-dependent RNA helic 100.0 1.8E-34 6.2E-39 361.1 30.8 397 8-443 85-531 (1010)
22 3fmp_B ATP-dependent RNA helic 100.0 1.1E-35 3.8E-40 347.2 16.1 321 10-418 115-447 (479)
23 2j0s_A ATP-dependent RNA helic 100.0 1.3E-34 4.5E-39 330.7 23.7 312 10-420 60-386 (410)
24 1hv8_A Putative ATP-dependent 100.0 4.3E-34 1.5E-38 320.4 25.7 310 9-421 28-349 (367)
25 1xti_A Probable ATP-dependent 100.0 5.8E-34 2E-38 322.8 26.9 312 10-419 31-359 (391)
26 3rc3_A ATP-dependent RNA helic 100.0 4.6E-34 1.6E-38 342.1 20.7 314 22-446 153-476 (677)
27 3fho_A ATP-dependent RNA helic 100.0 9.2E-35 3.2E-39 341.7 14.1 336 10-436 142-493 (508)
28 4a2p_A RIG-I, retinoic acid in 100.0 1.6E-33 5.5E-38 334.2 22.6 393 7-420 5-511 (556)
29 3tbk_A RIG-I helicase domain; 100.0 2.2E-33 7.6E-38 332.6 23.3 392 7-420 2-510 (555)
30 3i5x_A ATP-dependent RNA helic 100.0 3.1E-33 1.1E-37 333.1 24.0 324 10-419 95-451 (563)
31 1fuu_A Yeast initiation factor 100.0 3E-34 1E-38 325.2 14.3 314 9-421 43-370 (394)
32 2z0m_A 337AA long hypothetical 100.0 5.3E-33 1.8E-37 308.0 22.8 295 9-415 16-321 (337)
33 2v6i_A RNA helicase; membrane, 100.0 1.9E-33 6.5E-38 323.4 19.0 286 23-415 1-288 (431)
34 2v1x_A ATP-dependent DNA helic 100.0 2.8E-33 9.6E-38 333.1 21.1 310 10-421 45-378 (591)
35 3sqw_A ATP-dependent RNA helic 100.0 1.1E-32 3.7E-37 329.4 24.7 323 10-419 44-400 (579)
36 1yks_A Genome polyprotein [con 100.0 3.7E-33 1.3E-37 321.7 18.0 290 20-415 4-297 (440)
37 4gl2_A Interferon-induced heli 100.0 8.1E-34 2.8E-38 346.8 12.3 390 5-415 3-516 (699)
38 2wv9_A Flavivirin protease NS2 100.0 5.4E-33 1.8E-37 333.8 17.8 288 22-415 239-531 (673)
39 1wp9_A ATP-dependent RNA helic 100.0 1.7E-32 5.7E-37 318.1 19.6 376 5-420 5-478 (494)
40 1oyw_A RECQ helicase, ATP-depe 100.0 2.3E-32 7.9E-37 321.7 20.1 305 11-420 27-346 (523)
41 4a2q_A RIG-I, retinoic acid in 100.0 7.1E-32 2.4E-36 333.8 21.8 390 9-419 248-751 (797)
42 3oiy_A Reverse gyrase helicase 100.0 6.8E-32 2.3E-36 309.1 16.6 298 7-416 19-364 (414)
43 4a2w_A RIG-I, retinoic acid in 100.0 8.7E-31 3E-35 327.9 19.3 393 7-420 246-752 (936)
44 3llm_A ATP-dependent RNA helic 100.0 1.2E-29 3.9E-34 268.0 18.1 181 2-184 54-235 (235)
45 1gm5_A RECG; helicase, replica 100.0 6.3E-30 2.2E-34 310.8 10.8 298 9-415 368-695 (780)
46 2fwr_A DNA repair protein RAD2 100.0 5E-29 1.7E-33 290.3 14.7 336 7-420 91-457 (472)
47 2eyq_A TRCF, transcription-rep 100.0 6.3E-28 2.2E-32 306.3 24.7 298 10-417 604-922 (1151)
48 4ddu_A Reverse gyrase; topoiso 100.0 2.3E-28 8E-33 308.4 18.9 269 8-372 77-388 (1104)
49 2oca_A DAR protein, ATP-depend 100.0 7.3E-28 2.5E-32 283.2 21.9 330 9-415 113-453 (510)
50 1gku_B Reverse gyrase, TOP-RG; 99.9 3.2E-28 1.1E-32 307.2 6.9 263 12-371 59-352 (1054)
51 3h1t_A Type I site-specific re 99.9 4.1E-26 1.4E-30 273.2 19.8 338 8-407 177-545 (590)
52 1tf5_A Preprotein translocase 99.9 1.3E-24 4.6E-29 259.3 22.1 345 8-417 82-545 (844)
53 2fsf_A Preprotein translocase 99.9 1.1E-23 3.7E-28 250.8 21.9 106 285-417 440-583 (853)
54 1nkt_A Preprotein translocase 99.9 2.3E-22 7.9E-27 239.5 22.5 344 8-417 110-617 (922)
55 3dmq_A RNA polymerase-associat 99.9 1.2E-22 4.2E-27 254.6 19.8 378 8-418 152-616 (968)
56 3eaq_A Heat resistant RNA depe 99.9 2.6E-23 8.8E-28 215.8 9.6 174 275-473 20-211 (212)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.4E-21 8E-26 241.4 21.1 330 9-408 271-695 (1038)
58 1z63_A Helicase of the SNF2/RA 99.9 6E-21 2E-25 223.7 23.1 367 9-420 37-456 (500)
59 3i32_A Heat resistant RNA depe 99.9 1.6E-22 5.3E-27 220.2 6.6 179 275-478 17-213 (300)
60 3mwy_W Chromo domain-containin 99.8 1.3E-19 4.4E-24 223.8 14.0 111 285-420 571-687 (800)
61 1z3i_X Similar to RAD54-like; 99.8 7.6E-18 2.6E-22 203.0 28.1 112 284-420 414-531 (644)
62 1qde_A EIF4A, translation init 99.8 9E-19 3.1E-23 182.6 17.0 177 9-189 36-221 (224)
63 3ber_A Probable ATP-dependent 99.8 1.1E-18 3.8E-23 185.5 16.3 172 8-184 64-247 (249)
64 1vec_A ATP-dependent RNA helic 99.8 1.8E-18 6.3E-23 177.7 17.1 166 9-178 25-201 (206)
65 3iuy_A Probable ATP-dependent 99.8 1.5E-18 5.1E-23 181.6 16.1 170 9-179 42-223 (228)
66 1q0u_A Bstdead; DEAD protein, 99.8 1E-18 3.5E-23 181.7 13.8 173 9-185 26-212 (219)
67 2pl3_A Probable ATP-dependent 99.8 3E-18 1E-22 180.3 17.2 176 8-186 46-234 (236)
68 2oxc_A Probable ATP-dependent 99.8 1.4E-18 4.8E-23 182.3 14.6 172 10-184 47-228 (230)
69 3bor_A Human initiation factor 99.8 2.1E-18 7.2E-23 181.8 15.4 170 10-184 53-234 (237)
70 3dkp_A Probable ATP-dependent 99.8 5.8E-18 2E-22 179.1 18.3 176 9-186 51-242 (245)
71 3jux_A Protein translocase sub 99.8 5.7E-18 2E-22 197.7 19.7 107 285-418 473-588 (822)
72 2gxq_A Heat resistant RNA depe 99.8 5.8E-18 2E-22 174.0 17.2 170 9-183 23-204 (207)
73 3fmo_B ATP-dependent RNA helic 99.8 4.1E-18 1.4E-22 186.1 17.0 173 10-185 115-298 (300)
74 1c4o_A DNA nucleotide excision 99.8 1.1E-16 3.7E-21 193.0 28.5 114 285-418 438-551 (664)
75 1t6n_A Probable ATP-dependent 99.8 9.5E-18 3.2E-22 174.4 16.7 170 10-182 37-218 (220)
76 3fe2_A Probable ATP-dependent 99.8 4E-18 1.4E-22 180.2 13.8 173 10-185 52-238 (242)
77 1wrb_A DJVLGB; RNA helicase, D 99.7 1.5E-17 5.1E-22 176.9 16.7 173 10-185 46-240 (253)
78 3ly5_A ATP-dependent RNA helic 99.7 7.4E-18 2.5E-22 180.5 14.3 158 10-170 77-245 (262)
79 2hjv_A ATP-dependent RNA helic 99.7 2.7E-17 9.2E-22 163.0 10.0 120 276-420 25-145 (163)
80 1fuk_A Eukaryotic initiation f 99.7 2.7E-17 9.3E-22 163.3 9.8 120 276-420 20-140 (165)
81 2rb4_A ATP-dependent RNA helic 99.7 3.1E-17 1.1E-21 164.5 9.4 126 276-420 24-150 (175)
82 3b6e_A Interferon-induced heli 99.7 1.2E-16 4.1E-21 164.9 13.4 161 5-166 29-216 (216)
83 1t5i_A C_terminal domain of A 99.7 8.5E-17 2.9E-21 161.0 9.2 117 276-417 21-138 (172)
84 2jgn_A DBX, DDX3, ATP-dependen 99.7 8.4E-17 2.9E-21 163.0 7.1 110 285-419 45-155 (185)
85 2d7d_A Uvrabc system protein B 99.6 4E-16 1.4E-20 187.9 13.5 114 285-418 444-557 (661)
86 2p6n_A ATP-dependent RNA helic 99.6 4.1E-16 1.4E-20 158.7 8.8 107 286-417 54-161 (191)
87 2yjt_D ATP-dependent RNA helic 99.4 4.6E-17 1.6E-21 162.5 0.0 119 277-420 21-140 (170)
88 1rif_A DAR protein, DNA helica 99.5 1.6E-14 5.3E-19 156.2 12.5 148 8-168 112-263 (282)
89 2vl7_A XPD; helicase, unknown 99.5 3.3E-14 1.1E-18 167.7 14.7 123 276-413 375-518 (540)
90 2ipc_A Preprotein translocase 99.5 7.6E-13 2.6E-17 157.6 24.7 119 10-136 80-213 (997)
91 2fz4_A DNA repair protein RAD2 99.5 2.4E-13 8.3E-18 143.0 14.0 141 6-169 90-230 (237)
92 3crv_A XPD/RAD3 related DNA he 99.3 4.4E-10 1.5E-14 132.8 26.3 119 276-410 384-523 (551)
93 3adg_A F21M12.9 protein; HYL1, 99.2 4.7E-11 1.6E-15 101.0 8.9 68 809-876 1-72 (73)
94 1z5z_A Helicase of the SNF2/RA 99.1 5E-11 1.7E-15 127.7 8.8 111 285-420 111-227 (271)
95 2cpn_A TAR RNA-binding protein 99.1 3.5E-10 1.2E-14 99.1 10.3 69 809-878 14-86 (89)
96 1uhz_A Staufen (RNA binding pr 99.1 3.1E-10 1.1E-14 99.5 8.7 70 808-878 3-76 (89)
97 3adl_A RISC-loading complex su 99.0 5.3E-10 1.8E-14 97.7 8.9 73 805-878 9-85 (88)
98 3adj_A F21M12.9 protein; HYL1, 99.0 4.5E-10 1.5E-14 95.7 8.0 67 811-877 4-74 (76)
99 1ekz_A DSRBDIII, maternal effe 99.0 4.5E-10 1.5E-14 95.7 7.0 66 810-877 6-75 (76)
100 2l2n_A Hyponastic leave 1; DSR 99.0 8.8E-10 3E-14 99.4 8.5 72 807-878 13-88 (103)
101 1whn_A Hypothetical protein ri 99.0 1.3E-09 4.4E-14 101.7 9.7 73 809-881 24-98 (128)
102 1whq_A RNA helicase A; double- 99.0 6.1E-10 2.1E-14 99.5 7.0 70 808-879 3-77 (99)
103 2b7t_A Double-stranded RNA-spe 99.0 1E-09 3.5E-14 92.7 7.9 66 810-878 3-72 (73)
104 2dix_A Interferon-inducible do 99.0 1.9E-09 6.6E-14 93.5 9.5 67 809-877 6-76 (84)
105 3llh_A RISC-loading complex su 98.9 1.7E-09 6E-14 95.1 7.6 68 809-878 12-83 (90)
106 1di2_A XLRBPA, double stranded 98.9 2.1E-09 7.1E-14 89.8 7.3 64 813-877 2-69 (69)
107 2b7v_A Double-stranded RNA-spe 98.9 2.2E-09 7.7E-14 90.1 6.9 64 808-877 1-68 (71)
108 1x47_A DGCR8 protein; structur 98.9 4.1E-09 1.4E-13 94.1 8.5 72 809-880 14-87 (98)
109 2dmy_A Spermatid perinuclear R 98.8 1.5E-08 5.2E-13 90.3 9.4 67 808-877 13-83 (97)
110 1x49_A Interferon-induced, dou 98.8 1.4E-08 4.8E-13 90.4 7.8 69 809-878 12-84 (97)
111 2khx_A Ribonuclease 3; drosha, 98.7 7.5E-09 2.6E-13 89.8 5.5 67 812-878 2-77 (85)
112 2l33_A Interleukin enhancer-bi 98.7 1.9E-08 6.4E-13 88.1 7.4 65 811-878 14-82 (91)
113 1uil_A Double-stranded RNA-bin 98.7 2E-08 6.8E-13 92.0 7.6 66 811-877 26-99 (113)
114 1x48_A Interferon-induced, dou 98.7 2.3E-08 7.9E-13 87.4 7.4 69 809-879 4-76 (88)
115 2ljh_A Double-stranded RNA-spe 98.6 1.4E-07 4.6E-12 86.0 8.4 67 807-879 33-103 (114)
116 3p1x_A Interleukin enhancer-bi 98.5 2.4E-07 8.4E-12 78.4 6.9 63 813-878 6-72 (75)
117 1t4n_A Ribonuclease III; DSRBD 98.4 1.3E-07 4.4E-12 82.7 4.0 66 811-878 6-76 (94)
118 1qu6_A Protein kinase PKR; dsR 98.4 4.4E-07 1.5E-11 90.7 7.4 68 809-878 11-83 (179)
119 1qu6_A Protein kinase PKR; dsR 98.4 4.2E-07 1.4E-11 90.8 6.6 72 809-881 102-176 (179)
120 1t4o_A Ribonuclease III; RNT1P 98.3 3.6E-07 1.2E-11 82.8 5.1 67 810-878 7-78 (117)
121 2yt4_A Protein DGCR8; DSRBD, R 98.2 2E-06 7E-11 89.2 8.4 69 809-878 20-91 (232)
122 2nug_A Ribonuclease III, RNAse 98.1 2.3E-06 7.9E-11 88.5 6.7 66 811-877 150-219 (221)
123 1o0w_A Ribonuclease III, RNAse 98.1 2.5E-06 8.4E-11 90.1 6.7 68 811-878 179-250 (252)
124 2yt4_A Protein DGCR8; DSRBD, R 98.0 3E-06 1E-10 87.9 5.3 66 809-878 128-199 (232)
125 2l3j_A Double-stranded RNA-spe 98.0 5.9E-06 2E-10 86.1 7.5 64 809-878 159-226 (236)
126 1w36_D RECD, exodeoxyribonucle 98.0 1.6E-05 5.5E-10 94.6 11.2 67 12-79 152-218 (608)
127 2a11_A Ribonuclease III, RNAse 97.9 1.2E-06 4.2E-11 91.8 0.0 69 811-879 162-233 (242)
128 3n3w_A Ribonuclease III; nucle 97.9 2E-06 6.8E-11 90.4 0.0 66 811-877 177-247 (248)
129 2l3j_A Double-stranded RNA-spe 97.7 5.7E-05 1.9E-09 78.6 8.4 67 809-878 2-72 (236)
130 3e1s_A Exodeoxyribonuclease V, 97.5 0.00016 5.3E-09 85.4 9.5 64 9-77 189-252 (574)
131 3upu_A ATP-dependent DNA helic 97.5 0.00025 8.5E-09 81.5 11.1 64 10-77 26-94 (459)
132 2b8t_A Thymidine kinase; deoxy 97.3 0.0009 3.1E-08 68.9 10.8 115 22-165 10-124 (223)
133 4a15_A XPD helicase, ATP-depen 97.2 0.00058 2E-08 81.3 9.7 87 273-371 436-526 (620)
134 3rv0_A K. polysporus DCR1; RNA 97.2 4.7E-05 1.6E-09 83.3 0.0 75 811-886 254-329 (341)
135 2o0j_A Terminase, DNA packagin 97.2 0.0056 1.9E-07 68.1 16.4 153 7-176 161-323 (385)
136 3lfu_A DNA helicase II; SF1 he 97.0 0.0026 8.8E-08 76.2 11.9 72 10-84 10-81 (647)
137 2orw_A Thymidine kinase; TMTK, 96.9 0.0022 7.6E-08 64.0 8.8 39 23-66 2-40 (184)
138 3te6_A Regulatory protein SIR3 96.8 0.011 3.8E-07 64.0 14.3 126 23-168 44-174 (318)
139 3cpe_A Terminase, DNA packagin 96.8 0.022 7.4E-07 67.5 17.9 153 7-176 161-323 (592)
140 1xx6_A Thymidine kinase; NESG, 96.7 0.0039 1.3E-07 62.5 8.9 39 23-66 7-45 (191)
141 3ec2_A DNA replication protein 96.7 0.0064 2.2E-07 59.9 10.2 36 11-46 16-60 (180)
142 3kl4_A SRP54, signal recogniti 96.7 0.0077 2.6E-07 68.0 11.7 123 25-167 98-223 (433)
143 4b3f_X DNA-binding protein smu 96.5 0.004 1.4E-07 74.6 8.9 65 10-79 190-255 (646)
144 2db2_A KIAA0890 protein; DSRM 96.4 0.0062 2.1E-07 53.4 6.6 82 805-889 11-103 (119)
145 3dm5_A SRP54, signal recogniti 96.3 0.012 4.1E-07 66.5 10.4 123 25-167 101-224 (443)
146 2chg_A Replication factor C sm 96.3 0.033 1.1E-06 55.8 12.9 34 12-45 24-59 (226)
147 1njg_A DNA polymerase III subu 96.3 0.035 1.2E-06 56.4 13.1 33 13-45 31-66 (250)
148 3c4b_A Endoribonuclease dicer; 96.1 0.0053 1.8E-07 64.9 5.9 64 812-877 198-263 (265)
149 3n70_A Transport activator; si 96.0 0.028 9.4E-07 53.3 10.1 29 13-41 13-41 (145)
150 3e2i_A Thymidine kinase; Zn-bi 96.0 0.0069 2.4E-07 61.4 5.8 107 22-161 26-132 (219)
151 2gk6_A Regulator of nonsense t 95.9 0.012 4.2E-07 70.0 8.5 66 10-79 181-246 (624)
152 2w58_A DNAI, primosome compone 95.9 0.031 1.1E-06 55.9 10.2 20 25-44 55-74 (202)
153 2xzl_A ATP-dependent helicase 95.8 0.017 5.9E-07 70.6 9.0 66 10-79 361-426 (802)
154 2px0_A Flagellar biosynthesis 95.7 0.044 1.5E-06 58.8 10.9 127 23-174 104-231 (296)
155 1fnn_A CDC6P, cell division co 95.7 0.035 1.2E-06 61.4 10.5 43 459-501 328-374 (389)
156 3vkw_A Replicase large subunit 95.7 0.032 1.1E-06 62.8 10.0 109 24-166 161-269 (446)
157 2orv_A Thymidine kinase; TP4A 95.7 0.032 1.1E-06 57.2 9.1 40 23-67 18-57 (234)
158 2zpa_A Uncharacterized protein 95.6 0.014 4.8E-07 69.1 7.2 112 11-169 177-290 (671)
159 1a5t_A Delta prime, HOLB; zinc 95.6 0.034 1.2E-06 60.7 9.8 52 112-166 95-147 (334)
160 2v1u_A Cell division control p 95.4 0.062 2.1E-06 59.2 11.2 23 23-45 43-65 (387)
161 2wjy_A Regulator of nonsense t 95.4 0.025 8.4E-07 69.2 8.5 66 10-79 357-422 (800)
162 1vma_A Cell division protein F 95.4 0.09 3.1E-06 56.6 11.9 123 24-167 104-234 (306)
163 1jr3_A DNA polymerase III subu 95.3 0.062 2.1E-06 59.1 10.7 31 15-45 26-59 (373)
164 2j9r_A Thymidine kinase; TK1, 95.3 0.043 1.5E-06 55.7 8.4 40 23-67 27-66 (214)
165 2qby_B CDC6 homolog 3, cell di 95.2 0.037 1.3E-06 61.2 8.6 43 459-501 316-360 (384)
166 1iqp_A RFCS; clamp loader, ext 95.0 0.092 3.2E-06 56.4 10.9 32 14-45 34-67 (327)
167 3syl_A Protein CBBX; photosynt 95.0 0.089 3E-06 56.3 10.7 20 25-44 68-87 (309)
168 2qgz_A Helicase loader, putati 94.9 0.023 7.9E-07 61.4 5.8 22 24-45 152-173 (308)
169 1l8q_A Chromosomal replication 94.9 0.14 4.9E-06 55.3 12.0 21 25-45 38-58 (324)
170 2bjv_A PSP operon transcriptio 94.9 0.075 2.6E-06 55.6 9.5 21 21-41 26-46 (265)
171 3bos_A Putative DNA replicatio 94.9 0.056 1.9E-06 55.1 8.3 24 23-46 51-74 (242)
172 2kjq_A DNAA-related protein; s 94.8 0.078 2.7E-06 50.6 8.5 23 23-45 35-57 (149)
173 3u61_B DNA polymerase accessor 94.7 0.17 5.7E-06 54.7 11.8 30 15-44 36-68 (324)
174 1sxj_A Activator 1 95 kDa subu 94.5 0.12 4.1E-06 59.9 10.7 21 25-45 78-98 (516)
175 2qby_A CDC6 homolog 1, cell di 94.4 0.088 3E-06 57.8 8.9 22 24-45 45-66 (386)
176 2qen_A Walker-type ATPase; unk 94.3 0.13 4.4E-06 55.7 10.0 33 13-45 20-52 (350)
177 1ojl_A Transcriptional regulat 94.3 0.11 3.6E-06 56.0 8.9 25 22-47 23-47 (304)
178 1d2n_A N-ethylmaleimide-sensit 94.0 0.11 3.8E-06 54.6 8.3 21 25-45 65-85 (272)
179 1sxj_B Activator 1 37 kDa subu 93.9 0.17 5.8E-06 54.2 9.7 32 14-45 30-63 (323)
180 3pfi_A Holliday junction ATP-d 93.9 0.33 1.1E-05 52.6 12.1 20 25-44 56-75 (338)
181 1sxj_D Activator 1 41 kDa subu 93.8 0.068 2.3E-06 58.2 6.5 31 15-45 47-79 (353)
182 1ls1_A Signal recognition part 93.8 0.4 1.4E-05 51.2 12.4 125 24-168 98-223 (295)
183 1hqc_A RUVB; extended AAA-ATPa 93.8 0.2 7E-06 53.8 10.2 21 24-44 38-58 (324)
184 2gno_A DNA polymerase III, gam 93.8 0.28 9.6E-06 52.7 11.1 50 112-164 69-119 (305)
185 1w4r_A Thymidine kinase; type 93.7 0.063 2.1E-06 53.6 5.4 39 23-66 19-57 (195)
186 4a15_A XPD helicase, ATP-depen 93.7 0.044 1.5E-06 65.1 4.9 65 11-79 5-73 (620)
187 1sxj_C Activator 1 40 kDa subu 93.3 0.33 1.1E-05 52.8 10.7 30 16-45 36-67 (340)
188 2w0m_A SSO2452; RECA, SSPF, un 93.2 0.097 3.3E-06 53.1 6.1 29 20-48 19-47 (235)
189 3h4m_A Proteasome-activating n 93.1 0.15 5E-06 53.9 7.4 22 23-44 50-71 (285)
190 3vfd_A Spastin; ATPase, microt 93.1 0.2 6.7E-06 55.8 8.7 21 24-44 148-168 (389)
191 1w5s_A Origin recognition comp 93.0 0.23 7.9E-06 55.2 9.2 42 460-501 349-394 (412)
192 1xwi_A SKD1 protein; VPS4B, AA 92.9 0.21 7.1E-06 54.1 8.4 20 25-44 46-65 (322)
193 2fna_A Conserved hypothetical 92.7 0.38 1.3E-05 52.0 10.3 30 15-46 23-52 (357)
194 1sxj_E Activator 1 40 kDa subu 92.6 0.49 1.7E-05 51.4 11.0 43 123-167 132-174 (354)
195 1uaa_A REP helicase, protein ( 92.5 0.16 5.6E-06 60.8 7.6 90 10-118 3-92 (673)
196 3k1j_A LON protease, ATP-depen 92.4 1.1 3.8E-05 52.8 14.4 30 14-43 50-79 (604)
197 3u4q_A ATP-dependent helicase/ 92.1 0.12 4E-06 66.5 5.9 75 6-82 7-82 (1232)
198 2r6a_A DNAB helicase, replicat 92.1 0.13 4.4E-06 58.7 5.6 34 17-50 196-229 (454)
199 3pvs_A Replication-associated 92.1 0.39 1.3E-05 54.5 9.5 27 17-43 41-69 (447)
200 2z4s_A Chromosomal replication 92.1 0.4 1.4E-05 54.3 9.7 21 24-44 130-150 (440)
201 1pjr_A PCRA; DNA repair, DNA r 91.8 0.25 8.4E-06 59.9 8.0 106 10-135 12-120 (724)
202 4fcw_A Chaperone protein CLPB; 91.5 0.54 1.8E-05 50.1 9.4 19 25-43 48-66 (311)
203 2ffh_A Protein (FFH); SRP54, s 91.4 0.65 2.2E-05 52.2 10.2 52 24-78 98-149 (425)
204 3eie_A Vacuolar protein sortin 91.2 0.22 7.4E-06 53.9 6.0 21 24-44 51-71 (322)
205 3e70_C DPA, signal recognition 91.1 0.76 2.6E-05 49.8 10.2 128 23-170 128-256 (328)
206 2xxa_A Signal recognition part 91.1 0.62 2.1E-05 52.5 9.8 123 25-166 101-224 (433)
207 2qp9_X Vacuolar protein sortin 90.8 0.19 6.6E-06 55.2 5.2 21 25-45 85-105 (355)
208 3co5_A Putative two-component 90.6 0.17 5.7E-06 47.7 3.8 29 13-41 16-44 (143)
209 3pxi_A Negative regulator of g 90.5 0.95 3.2E-05 55.0 11.4 17 26-42 523-539 (758)
210 1j8m_F SRP54, signal recogniti 90.5 0.68 2.3E-05 49.5 8.9 124 25-167 99-224 (297)
211 1zu4_A FTSY; GTPase, signal re 90.4 1.7 5.7E-05 46.9 12.0 45 24-71 105-149 (320)
212 3t15_A Ribulose bisphosphate c 90.2 0.41 1.4E-05 51.0 7.0 19 25-43 37-55 (293)
213 4b4t_J 26S protease regulatory 89.9 0.44 1.5E-05 53.0 7.0 18 24-41 182-199 (405)
214 2kou_A Dicer-like protein 4; A 89.6 0.31 1.1E-05 43.2 4.4 65 812-877 5-80 (102)
215 2v3c_C SRP54, signal recogniti 89.6 0.26 8.9E-06 55.7 4.9 45 25-72 100-144 (432)
216 2j37_W Signal recognition part 89.3 2.1 7.2E-05 49.1 12.3 121 26-167 103-225 (504)
217 1g5t_A COB(I)alamin adenosyltr 89.2 0.31 1.1E-05 48.6 4.6 37 23-64 27-63 (196)
218 3b85_A Phosphate starvation-in 88.9 0.31 1.1E-05 49.2 4.4 37 9-45 7-43 (208)
219 4b4t_H 26S protease regulatory 88.8 0.66 2.2E-05 52.4 7.5 19 24-42 243-261 (467)
220 1kgd_A CASK, peripheral plasma 88.6 0.25 8.7E-06 48.4 3.5 22 23-44 4-25 (180)
221 3hgt_A HDA1 complex subunit 3; 88.5 1.6 5.6E-05 46.8 9.9 120 270-420 111-240 (328)
222 2eyu_A Twitching motility prot 88.0 0.2 6.9E-06 52.5 2.5 24 21-44 22-45 (261)
223 2l8b_A Protein TRAI, DNA helic 88.0 1.7 5.7E-05 42.6 8.7 125 7-166 32-158 (189)
224 4b4t_M 26S protease regulatory 87.9 0.61 2.1E-05 52.5 6.4 19 24-42 215-233 (434)
225 3tr0_A Guanylate kinase, GMP k 87.7 0.28 9.7E-06 48.7 3.3 24 21-44 4-27 (205)
226 3cmu_A Protein RECA, recombina 87.4 0.19 6.5E-06 66.4 2.2 27 23-49 1426-1452(2050)
227 2dr3_A UPF0273 protein PH0284; 87.4 0.54 1.8E-05 48.0 5.3 29 21-49 20-48 (247)
228 1jbk_A CLPB protein; beta barr 87.4 0.64 2.2E-05 44.9 5.6 33 13-45 30-64 (195)
229 2gza_A Type IV secretion syste 87.2 0.42 1.4E-05 52.6 4.6 27 18-44 169-195 (361)
230 3tau_A Guanylate kinase, GMP k 87.2 0.34 1.2E-05 48.7 3.5 23 22-44 6-28 (208)
231 2oap_1 GSPE-2, type II secreti 87.2 0.37 1.3E-05 55.6 4.2 27 17-43 253-279 (511)
232 4b4t_K 26S protease regulatory 87.0 1.2 4E-05 50.1 8.0 18 25-42 207-224 (428)
233 2j41_A Guanylate kinase; GMP, 86.9 0.33 1.1E-05 48.2 3.3 24 21-44 3-26 (207)
234 2yhs_A FTSY, cell division pro 86.8 2.4 8.1E-05 48.4 10.5 22 24-45 293-314 (503)
235 4b4t_I 26S protease regulatory 86.7 1.1 3.7E-05 50.2 7.5 17 25-41 217-233 (437)
236 1lvg_A Guanylate kinase, GMP k 86.6 0.35 1.2E-05 48.3 3.2 22 23-44 3-24 (198)
237 2zts_A Putative uncharacterize 86.5 0.71 2.4E-05 47.1 5.6 31 21-51 27-57 (251)
238 4b4t_L 26S protease subunit RP 86.4 1 3.4E-05 50.8 7.1 19 24-42 215-233 (437)
239 1znw_A Guanylate kinase, GMP k 86.2 0.34 1.1E-05 48.6 2.9 24 20-43 16-39 (207)
240 3vaa_A Shikimate kinase, SK; s 86.2 0.41 1.4E-05 47.6 3.5 25 21-45 22-46 (199)
241 2p65_A Hypothetical protein PF 86.2 0.64 2.2E-05 44.8 4.8 32 15-46 32-65 (187)
242 3ney_A 55 kDa erythrocyte memb 85.8 0.46 1.6E-05 47.5 3.5 23 23-45 18-40 (197)
243 2pt7_A CAG-ALFA; ATPase, prote 85.6 0.46 1.6E-05 51.6 3.8 24 19-42 166-189 (330)
244 1p9r_A General secretion pathw 85.6 0.61 2.1E-05 52.3 4.8 31 15-45 156-188 (418)
245 3umf_A Adenylate kinase; rossm 85.5 0.35 1.2E-05 49.2 2.6 26 21-46 26-51 (217)
246 1z6g_A Guanylate kinase; struc 85.5 0.45 1.5E-05 48.3 3.4 24 21-44 20-43 (218)
247 3lw7_A Adenylate kinase relate 85.5 0.35 1.2E-05 46.3 2.5 20 25-44 2-21 (179)
248 1xp8_A RECA protein, recombina 85.3 1.6 5.5E-05 48.0 8.0 29 21-49 71-99 (366)
249 4gp7_A Metallophosphoesterase; 85.2 0.24 8.3E-06 48.1 1.2 22 22-43 7-28 (171)
250 1zp6_A Hypothetical protein AT 85.2 0.32 1.1E-05 47.7 2.1 24 21-44 6-29 (191)
251 3a8t_A Adenylate isopentenyltr 84.8 0.44 1.5E-05 51.7 3.0 21 24-44 40-60 (339)
252 3exa_A TRNA delta(2)-isopenten 84.8 0.44 1.5E-05 51.1 3.0 21 24-44 3-23 (322)
253 3a00_A Guanylate kinase, GMP k 84.7 0.5 1.7E-05 46.4 3.3 21 24-44 1-21 (186)
254 1qvr_A CLPB protein; coiled co 84.7 0.87 3E-05 56.1 6.1 24 25-49 589-612 (854)
255 1kht_A Adenylate kinase; phosp 84.7 0.43 1.5E-05 46.6 2.8 22 24-45 3-24 (192)
256 3jvv_A Twitching mobility prot 84.6 0.44 1.5E-05 52.3 3.1 23 22-44 121-143 (356)
257 3bh0_A DNAB-like replicative h 84.3 1 3.6E-05 48.4 5.8 57 17-79 61-117 (315)
258 2cvh_A DNA repair and recombin 84.3 0.76 2.6E-05 46.0 4.5 27 20-46 16-42 (220)
259 3trf_A Shikimate kinase, SK; a 84.2 0.59 2E-05 45.5 3.5 22 24-45 5-26 (185)
260 2ewv_A Twitching motility prot 84.0 0.4 1.4E-05 53.0 2.4 25 21-45 133-157 (372)
261 2qor_A Guanylate kinase; phosp 83.9 0.58 2E-05 46.7 3.3 24 21-44 9-32 (204)
262 2qmh_A HPR kinase/phosphorylas 83.9 0.5 1.7E-05 47.3 2.7 22 24-45 34-55 (205)
263 2c95_A Adenylate kinase 1; tra 83.6 0.73 2.5E-05 45.2 3.9 25 21-45 6-30 (196)
264 1kag_A SKI, shikimate kinase I 83.4 0.52 1.8E-05 45.4 2.6 21 24-44 4-24 (173)
265 1qhx_A CPT, protein (chloramph 83.1 0.57 1.9E-05 45.3 2.8 20 24-43 3-22 (178)
266 2ehv_A Hypothetical protein PH 82.6 0.77 2.6E-05 46.9 3.7 28 20-47 26-53 (251)
267 3cmu_A Protein RECA, recombina 82.6 1.2 4E-05 59.1 6.1 30 20-49 1077-1106(2050)
268 3kb2_A SPBC2 prophage-derived 82.4 0.73 2.5E-05 44.1 3.3 19 26-44 3-21 (173)
269 3sr0_A Adenylate kinase; phosp 82.4 0.69 2.4E-05 46.6 3.2 21 26-46 2-22 (206)
270 2bwj_A Adenylate kinase 5; pho 82.4 0.97 3.3E-05 44.4 4.3 26 20-45 8-33 (199)
271 3cm0_A Adenylate kinase; ATP-b 82.4 0.57 1.9E-05 45.7 2.5 23 23-45 3-25 (186)
272 2ze6_A Isopentenyl transferase 82.4 0.67 2.3E-05 48.2 3.2 20 26-45 3-22 (253)
273 1zd8_A GTP:AMP phosphotransfer 82.2 0.75 2.6E-05 46.7 3.5 24 22-45 5-28 (227)
274 3foz_A TRNA delta(2)-isopenten 81.9 0.73 2.5E-05 49.3 3.3 20 25-44 11-30 (316)
275 3lnc_A Guanylate kinase, GMP k 81.8 0.42 1.4E-05 48.7 1.3 24 21-44 24-47 (231)
276 3iij_A Coilin-interacting nucl 81.7 0.82 2.8E-05 44.4 3.4 23 22-44 9-31 (180)
277 1ly1_A Polynucleotide kinase; 81.6 0.79 2.7E-05 44.2 3.2 20 25-44 3-22 (181)
278 4eun_A Thermoresistant glucoki 81.4 0.88 3E-05 45.2 3.5 23 22-44 27-49 (200)
279 1knq_A Gluconate kinase; ALFA/ 81.2 0.6 2.1E-05 45.1 2.2 22 23-44 7-28 (175)
280 1s96_A Guanylate kinase, GMP k 81.2 0.89 3E-05 46.2 3.5 24 20-43 12-35 (219)
281 3tlx_A Adenylate kinase 2; str 81.2 0.82 2.8E-05 47.1 3.3 23 23-45 28-50 (243)
282 3b9q_A Chloroplast SRP recepto 80.9 2.2 7.4E-05 45.6 6.6 22 24-45 100-121 (302)
283 1zuh_A Shikimate kinase; alpha 80.9 0.86 2.9E-05 43.7 3.2 21 24-44 7-27 (168)
284 2v54_A DTMP kinase, thymidylat 80.6 0.97 3.3E-05 44.7 3.5 22 23-44 3-24 (204)
285 4a74_A DNA repair and recombin 80.5 0.59 2E-05 47.1 1.9 28 20-47 21-48 (231)
286 1y63_A LMAJ004144AAA protein; 80.3 0.96 3.3E-05 44.3 3.3 22 23-44 9-30 (184)
287 2rhm_A Putative kinase; P-loop 80.2 0.88 3E-05 44.5 3.0 23 23-45 4-26 (193)
288 3tif_A Uncharacterized ABC tra 79.8 0.63 2.2E-05 47.9 1.8 21 22-42 29-49 (235)
289 1ex7_A Guanylate kinase; subst 79.6 1.2 4E-05 44.1 3.6 19 25-43 2-20 (186)
290 2r44_A Uncharacterized protein 79.5 1.2 4.1E-05 48.0 4.0 31 13-43 35-65 (331)
291 1e9r_A Conjugal transfer prote 79.2 1.6 5.3E-05 49.2 5.0 43 23-70 52-94 (437)
292 1tev_A UMP-CMP kinase; ploop, 79.2 0.98 3.3E-05 44.1 3.0 21 24-44 3-23 (196)
293 3fb4_A Adenylate kinase; psych 79.0 1 3.6E-05 45.0 3.2 20 26-45 2-21 (216)
294 1ofh_A ATP-dependent HSL prote 79.0 1.8 6E-05 45.7 5.2 21 24-44 50-70 (310)
295 3uie_A Adenylyl-sulfate kinase 78.6 1.1 3.6E-05 44.6 3.0 23 22-44 23-45 (200)
296 1nks_A Adenylate kinase; therm 78.6 1.1 3.8E-05 43.6 3.1 20 26-45 3-22 (194)
297 3t61_A Gluconokinase; PSI-biol 78.5 1.1 3.7E-05 44.4 3.1 21 24-44 18-38 (202)
298 1n0w_A DNA repair protein RAD5 78.5 0.86 2.9E-05 46.4 2.4 28 21-48 21-48 (243)
299 3crm_A TRNA delta(2)-isopenten 78.4 1.2 4E-05 48.1 3.5 20 25-44 6-25 (323)
300 3d3q_A TRNA delta(2)-isopenten 78.4 1.2 4.1E-05 48.4 3.5 20 25-44 8-27 (340)
301 3hws_A ATP-dependent CLP prote 78.3 1.6 5.5E-05 47.7 4.7 21 23-43 50-70 (363)
302 3dl0_A Adenylate kinase; phosp 78.3 1.1 3.9E-05 44.8 3.2 20 26-45 2-21 (216)
303 3c8u_A Fructokinase; YP_612366 78.1 0.99 3.4E-05 45.1 2.7 21 23-43 21-41 (208)
304 1cke_A CK, MSSA, protein (cyti 78.1 1.2 4.2E-05 44.8 3.4 21 24-44 5-25 (227)
305 1rj9_A FTSY, signal recognitio 78.1 2.3 7.8E-05 45.5 5.7 23 23-45 101-123 (304)
306 2cbz_A Multidrug resistance-as 78.0 0.76 2.6E-05 47.3 1.8 21 22-42 29-49 (237)
307 2plr_A DTMP kinase, probable t 78.0 1.1 3.8E-05 44.4 3.0 23 23-45 3-25 (213)
308 1zak_A Adenylate kinase; ATP:A 77.9 1.1 3.8E-05 45.1 3.0 22 24-45 5-26 (222)
309 2qt1_A Nicotinamide riboside k 77.9 0.89 3E-05 45.3 2.2 24 20-43 17-40 (207)
310 2jaq_A Deoxyguanosine kinase; 77.8 1.2 4.1E-05 43.9 3.2 20 26-45 2-21 (205)
311 1gvn_B Zeta; postsegregational 77.8 1.6 5.6E-05 46.1 4.4 21 25-45 34-54 (287)
312 2i1q_A DNA repair and recombin 77.7 1.9 6.6E-05 46.2 5.0 28 22-49 96-123 (322)
313 3asz_A Uridine kinase; cytidin 77.7 1.1 3.9E-05 44.5 3.0 22 22-43 4-25 (211)
314 1aky_A Adenylate kinase; ATP:A 77.7 1.3 4.6E-05 44.5 3.5 22 24-45 4-25 (220)
315 1cr0_A DNA primase/helicase; R 77.6 1.1 3.7E-05 47.5 3.0 33 17-49 28-60 (296)
316 1qf9_A UMP/CMP kinase, protein 77.6 1.2 4.2E-05 43.2 3.2 21 25-45 7-27 (194)
317 3b9p_A CG5977-PA, isoform A; A 77.5 1.8 6.3E-05 45.6 4.7 21 24-44 54-74 (297)
318 2pez_A Bifunctional 3'-phospho 77.4 1.2 3.9E-05 43.3 2.9 22 23-44 4-25 (179)
319 2bdt_A BH3686; alpha-beta prot 77.4 1 3.5E-05 44.1 2.5 20 25-44 3-22 (189)
320 2wwf_A Thymidilate kinase, put 77.3 1.3 4.5E-05 44.0 3.3 23 23-45 9-31 (212)
321 2ius_A DNA translocase FTSK; n 77.2 2 6.9E-05 49.3 5.2 28 22-49 165-192 (512)
322 2z0h_A DTMP kinase, thymidylat 77.2 1.2 4.2E-05 43.5 3.0 20 26-45 2-21 (197)
323 2f1r_A Molybdopterin-guanine d 77.1 0.98 3.3E-05 44.0 2.2 21 25-45 3-23 (171)
324 1lv7_A FTSH; alpha/beta domain 77.0 1.7 5.8E-05 44.8 4.2 21 24-44 45-65 (257)
325 1nlf_A Regulatory protein REPA 77.0 1 3.5E-05 47.3 2.6 27 21-47 27-53 (279)
326 2v9p_A Replication protein E1; 77.0 1.3 4.4E-05 47.4 3.3 24 21-44 123-146 (305)
327 1e6c_A Shikimate kinase; phosp 76.9 1.3 4.3E-05 42.5 3.0 20 25-44 3-22 (173)
328 3gfo_A Cobalt import ATP-bindi 76.7 0.83 2.8E-05 48.2 1.7 21 22-42 32-52 (275)
329 1nn5_A Similar to deoxythymidy 76.7 1.4 4.7E-05 43.9 3.3 23 23-45 8-30 (215)
330 1e4v_A Adenylate kinase; trans 76.7 1.3 4.5E-05 44.3 3.2 20 26-45 2-21 (214)
331 1rz3_A Hypothetical protein rb 76.7 1.9 6.5E-05 42.8 4.3 30 15-44 8-42 (201)
332 2og2_A Putative signal recogni 76.6 3.4 0.00012 45.2 6.6 22 24-45 157-178 (359)
333 3nh6_A ATP-binding cassette SU 76.6 0.76 2.6E-05 49.3 1.4 21 22-42 78-98 (306)
334 1m7g_A Adenylylsulfate kinase; 76.6 1.2 4.1E-05 44.6 2.8 24 21-44 22-45 (211)
335 2pcj_A ABC transporter, lipopr 76.5 0.86 3E-05 46.4 1.7 21 22-42 28-48 (224)
336 1ukz_A Uridylate kinase; trans 76.4 1.4 4.8E-05 43.6 3.2 21 25-45 16-36 (203)
337 2cdn_A Adenylate kinase; phosp 76.2 1.6 5.4E-05 43.2 3.5 21 25-45 21-41 (201)
338 3eph_A TRNA isopentenyltransfe 76.1 1.3 4.3E-05 49.3 2.9 20 25-44 3-22 (409)
339 1gtv_A TMK, thymidylate kinase 76.0 0.89 3E-05 45.3 1.6 20 26-45 2-21 (214)
340 1sgw_A Putative ABC transporte 75.8 0.9 3.1E-05 46.0 1.6 21 22-42 33-53 (214)
341 2ff7_A Alpha-hemolysin translo 75.8 0.94 3.2E-05 46.9 1.8 22 22-43 33-54 (247)
342 2yvu_A Probable adenylyl-sulfa 75.8 1.4 4.9E-05 42.9 3.0 23 23-45 12-34 (186)
343 3tqc_A Pantothenate kinase; bi 75.7 2.3 7.9E-05 45.8 4.9 18 26-43 94-111 (321)
344 2pt5_A Shikimate kinase, SK; a 75.6 1.4 5E-05 41.9 3.0 19 26-44 2-20 (168)
345 2pze_A Cystic fibrosis transme 75.5 0.96 3.3E-05 46.2 1.7 21 22-42 32-52 (229)
346 2pbr_A DTMP kinase, thymidylat 75.5 1.4 4.9E-05 42.8 3.0 20 26-45 2-21 (195)
347 2vp4_A Deoxynucleoside kinase; 75.5 1.2 3.9E-05 45.5 2.3 21 23-43 19-39 (230)
348 2z43_A DNA repair and recombin 75.4 2.4 8.3E-05 45.6 5.0 27 22-48 105-131 (324)
349 2vli_A Antibiotic resistance p 75.4 1.2 4.2E-05 43.0 2.4 22 23-44 4-25 (183)
350 2ghi_A Transport protein; mult 75.3 1 3.4E-05 47.1 1.8 22 22-43 44-65 (260)
351 2iyv_A Shikimate kinase, SK; t 75.3 1.5 5.2E-05 42.5 3.1 20 25-44 3-22 (184)
352 3nbx_X ATPase RAVA; AAA+ ATPas 75.2 2 6.8E-05 49.3 4.4 28 14-41 31-58 (500)
353 4a1f_A DNAB helicase, replicat 75.1 2.1 7.1E-05 46.5 4.3 57 15-77 37-93 (338)
354 3bgw_A DNAB-like replicative h 75.0 1.9 6.5E-05 48.7 4.2 55 18-78 191-245 (444)
355 1b0u_A Histidine permease; ABC 75.0 1 3.5E-05 47.1 1.8 21 22-42 30-50 (262)
356 3lda_A DNA repair protein RAD5 75.0 2.5 8.4E-05 47.1 5.0 28 22-49 176-203 (400)
357 2qz4_A Paraplegin; AAA+, SPG7, 74.9 3.1 0.00011 42.6 5.6 21 24-44 39-59 (262)
358 1g6h_A High-affinity branched- 74.9 1 3.5E-05 46.9 1.8 21 22-42 31-51 (257)
359 3kta_A Chromosome segregation 74.9 1.9 6.3E-05 41.8 3.6 19 25-43 27-45 (182)
360 1htw_A HI0065; nucleotide-bind 74.9 2.7 9.4E-05 40.2 4.7 23 22-44 31-53 (158)
361 1ak2_A Adenylate kinase isoenz 74.7 1.8 6.1E-05 44.1 3.5 23 23-45 15-37 (233)
362 2bbw_A Adenylate kinase 4, AK4 74.7 1.8 6E-05 44.5 3.5 23 23-45 26-48 (246)
363 1xjc_A MOBB protein homolog; s 74.6 3.6 0.00012 39.9 5.5 39 25-66 5-43 (169)
364 1mv5_A LMRA, multidrug resista 74.6 0.91 3.1E-05 46.9 1.3 22 22-43 26-47 (243)
365 1ji0_A ABC transporter; ATP bi 74.5 1.1 3.6E-05 46.3 1.8 21 22-42 30-50 (240)
366 2xb4_A Adenylate kinase; ATP-b 74.5 1.6 5.6E-05 44.1 3.2 20 26-45 2-21 (223)
367 1v5w_A DMC1, meiotic recombina 74.5 2.5 8.5E-05 46.0 4.8 28 22-49 120-147 (343)
368 4g1u_C Hemin import ATP-bindin 74.4 1 3.6E-05 47.1 1.7 21 22-42 35-55 (266)
369 4eaq_A DTMP kinase, thymidylat 74.2 1.6 5.5E-05 44.5 3.0 23 23-45 25-47 (229)
370 3be4_A Adenylate kinase; malar 74.0 1.9 6.6E-05 43.3 3.5 22 24-45 5-26 (217)
371 3cf2_A TER ATPase, transitiona 73.9 2.3 7.9E-05 51.6 4.7 17 25-41 239-255 (806)
372 2zu0_C Probable ATP-dependent 73.9 1.1 3.9E-05 46.9 1.8 21 22-42 44-64 (267)
373 2d2e_A SUFC protein; ABC-ATPas 73.9 1.1 3.8E-05 46.4 1.8 22 22-43 27-48 (250)
374 2if2_A Dephospho-COA kinase; a 73.8 1.5 5.1E-05 43.4 2.6 18 26-43 3-20 (204)
375 1f2t_A RAD50 ABC-ATPase; DNA d 73.8 1.4 4.8E-05 41.7 2.3 19 24-42 23-41 (149)
376 3cf0_A Transitional endoplasmi 73.7 3.3 0.00011 43.9 5.5 22 23-44 48-69 (301)
377 1vpl_A ABC transporter, ATP-bi 73.6 1.2 4E-05 46.5 1.8 21 22-42 39-59 (256)
378 2i3b_A HCR-ntpase, human cance 73.5 1.9 6.5E-05 42.6 3.3 22 24-45 1-22 (189)
379 4ag6_A VIRB4 ATPase, type IV s 73.5 3.1 0.00011 46.0 5.4 41 23-68 34-74 (392)
380 2olj_A Amino acid ABC transpor 73.5 1.2 4E-05 46.7 1.8 21 22-42 48-68 (263)
381 2ixe_A Antigen peptide transpo 73.4 1.2 4.1E-05 46.9 1.8 21 22-42 43-63 (271)
382 1ye8_A Protein THEP1, hypothet 73.4 2 6.8E-05 42.0 3.3 19 26-44 2-20 (178)
383 1ny5_A Transcriptional regulat 73.2 7.6 0.00026 42.8 8.5 24 22-46 158-181 (387)
384 1tf7_A KAIC; homohexamer, hexa 73.2 3.1 0.00011 48.0 5.5 32 20-51 35-66 (525)
385 1in4_A RUVB, holliday junction 73.1 2.4 8.3E-05 45.8 4.3 20 25-44 52-71 (334)
386 2zr9_A Protein RECA, recombina 72.8 3.2 0.00011 45.2 5.2 29 21-49 58-86 (349)
387 1via_A Shikimate kinase; struc 72.8 2 6.7E-05 41.4 3.1 19 26-44 6-24 (175)
388 2yz2_A Putative ABC transporte 72.7 1.3 4.3E-05 46.5 1.8 21 22-42 31-51 (266)
389 2ihy_A ABC transporter, ATP-bi 72.6 1.2 4.2E-05 46.9 1.7 21 22-42 45-65 (279)
390 1uf9_A TT1252 protein; P-loop, 72.2 1.9 6.6E-05 42.3 3.0 20 25-44 9-28 (203)
391 2nq2_C Hypothetical ABC transp 72.2 1.3 4.4E-05 46.1 1.7 21 22-42 29-49 (253)
392 1u94_A RECA protein, recombina 72.0 3.5 0.00012 45.1 5.2 28 22-49 61-88 (356)
393 1vht_A Dephospho-COA kinase; s 72.0 1.7 5.8E-05 43.6 2.6 21 24-44 4-24 (218)
394 2qi9_C Vitamin B12 import ATP- 72.0 1.3 4.5E-05 45.9 1.7 21 22-42 24-44 (249)
395 3uk6_A RUVB-like 2; hexameric 71.8 3.4 0.00012 44.9 5.2 29 17-45 59-91 (368)
396 3a4m_A L-seryl-tRNA(SEC) kinas 71.8 1.8 6.3E-05 44.9 2.9 21 24-44 4-24 (260)
397 1np6_A Molybdopterin-guanine d 71.8 2.3 7.8E-05 41.5 3.3 23 24-46 6-28 (174)
398 2iut_A DNA translocase FTSK; n 71.5 3.9 0.00013 47.5 5.6 44 23-67 213-256 (574)
399 3nwj_A ATSK2; P loop, shikimat 71.4 2.3 7.9E-05 44.1 3.4 21 24-44 48-68 (250)
400 1jjv_A Dephospho-COA kinase; P 71.3 2.1 7.1E-05 42.4 3.0 19 26-44 4-22 (206)
401 3d8b_A Fidgetin-like protein 1 71.0 3.6 0.00012 44.8 5.1 21 24-44 117-137 (357)
402 3hr8_A Protein RECA; alpha and 70.7 2.5 8.6E-05 46.2 3.7 27 23-49 60-86 (356)
403 1ixz_A ATP-dependent metallopr 70.6 1.7 6E-05 44.7 2.3 20 25-44 50-69 (254)
404 4e22_A Cytidylate kinase; P-lo 70.6 1.8 6.2E-05 44.7 2.5 23 22-44 25-47 (252)
405 1tue_A Replication protein E1; 70.5 2 6.7E-05 43.2 2.5 19 25-43 59-77 (212)
406 1q57_A DNA primase/helicase; d 70.4 3.6 0.00012 47.2 5.2 58 15-77 233-290 (503)
407 3fvq_A Fe(3+) IONS import ATP- 70.3 1.5 5.2E-05 48.0 1.8 21 22-42 28-48 (359)
408 2q6t_A DNAB replication FORK h 70.2 2.9 9.8E-05 47.2 4.2 57 16-77 192-248 (444)
409 2jeo_A Uridine-cytidine kinase 70.1 2.1 7E-05 44.0 2.7 24 21-44 22-45 (245)
410 2bbs_A Cystic fibrosis transme 69.9 1.6 5.4E-05 46.4 1.8 21 22-42 62-82 (290)
411 1gm5_A RECG; helicase, replica 69.8 5.1 0.00017 48.6 6.5 78 286-366 417-495 (780)
412 3aez_A Pantothenate kinase; tr 69.6 1.9 6.3E-05 46.4 2.3 23 21-43 87-109 (312)
413 2vhj_A Ntpase P4, P4; non- hyd 69.4 2.5 8.7E-05 45.4 3.3 25 23-47 122-146 (331)
414 2v26_A Myosin VI; calmodulin-b 69.4 3.6 0.00012 49.7 5.0 37 5-41 116-157 (784)
415 3sfz_A APAF-1, apoptotic pepti 69.3 16 0.00056 46.2 11.5 35 13-47 132-170 (1249)
416 4tmk_A Protein (thymidylate ki 69.2 2.9 9.8E-05 42.2 3.5 22 23-44 2-23 (213)
417 4edh_A DTMP kinase, thymidylat 68.8 2.6 8.7E-05 42.5 3.0 23 23-45 5-27 (213)
418 3v9p_A DTMP kinase, thymidylat 68.8 2.2 7.5E-05 43.6 2.5 25 21-45 22-46 (227)
419 3tmk_A Thymidylate kinase; pho 68.6 3 0.0001 42.2 3.5 23 23-45 4-26 (216)
420 3rlf_A Maltose/maltodextrin im 68.6 1.7 5.9E-05 47.9 1.8 21 22-42 27-47 (381)
421 1z47_A CYSA, putative ABC-tran 68.3 1.7 5.9E-05 47.5 1.8 21 22-42 39-59 (355)
422 1odf_A YGR205W, hypothetical 3 68.3 2.5 8.7E-05 44.8 3.0 19 25-43 32-50 (290)
423 2r8r_A Sensor protein; KDPD, P 68.3 5.6 0.00019 40.5 5.4 37 26-65 8-44 (228)
424 3lv8_A DTMP kinase, thymidylat 68.2 3.1 0.0001 42.7 3.5 24 22-45 25-48 (236)
425 3qf7_A RAD50; ABC-ATPase, ATPa 68.2 2.1 7.3E-05 47.0 2.5 19 25-43 24-42 (365)
426 2onk_A Molybdate/tungstate ABC 67.4 1.8 6.3E-05 44.5 1.6 21 22-43 23-43 (240)
427 2yyz_A Sugar ABC transporter, 67.3 1.9 6.5E-05 47.2 1.8 21 22-42 27-47 (359)
428 3auy_A DNA double-strand break 67.3 2.1 7.3E-05 47.0 2.3 19 24-42 25-43 (371)
429 2grj_A Dephospho-COA kinase; T 67.3 2.9 9.9E-05 41.4 3.0 21 24-44 12-32 (192)
430 1p5z_B DCK, deoxycytidine kina 67.3 2.3 7.8E-05 44.2 2.4 21 23-43 23-43 (263)
431 2it1_A 362AA long hypothetical 67.1 1.9 6.6E-05 47.3 1.8 21 22-42 27-47 (362)
432 2d7d_A Uvrabc system protein B 67.0 11 0.00039 44.7 8.6 70 6-83 9-83 (661)
433 2p5t_B PEZT; postsegregational 66.9 2.1 7.2E-05 44.2 2.0 20 25-44 33-52 (253)
434 3vkg_A Dynein heavy chain, cyt 66.9 6 0.00021 54.8 6.8 56 17-74 899-954 (3245)
435 3bs4_A Uncharacterized protein 66.8 5.6 0.00019 41.4 5.2 39 23-64 20-58 (260)
436 3d31_A Sulfate/molybdate ABC t 66.7 1.8 6E-05 47.3 1.4 21 22-42 24-44 (348)
437 2pjz_A Hypothetical protein ST 66.7 2 6.7E-05 45.0 1.7 19 24-42 30-48 (263)
438 2r2a_A Uncharacterized protein 66.5 3.6 0.00012 41.0 3.5 23 26-48 7-29 (199)
439 1ltq_A Polynucleotide kinase; 66.4 3 0.0001 44.0 3.2 20 25-44 3-22 (301)
440 1iy2_A ATP-dependent metallopr 66.3 2.4 8.2E-05 44.4 2.3 19 25-43 74-92 (278)
441 1tq4_A IIGP1, interferon-induc 66.3 3.9 0.00013 45.7 4.1 19 25-43 70-88 (413)
442 1pzn_A RAD51, DNA repair and r 66.1 2.3 8E-05 46.4 2.2 27 22-48 129-155 (349)
443 2chq_A Replication factor C sm 66.1 3.2 0.00011 43.8 3.4 20 26-45 40-59 (319)
444 4akg_A Glutathione S-transfera 66.1 6.1 0.00021 54.2 6.6 53 16-70 915-967 (2695)
445 1v43_A Sugar-binding transport 65.7 2.1 7.2E-05 47.1 1.8 21 22-42 35-55 (372)
446 1g29_1 MALK, maltose transport 65.6 2.1 7.2E-05 47.1 1.8 21 22-42 27-47 (372)
447 2ocp_A DGK, deoxyguanosine kin 65.4 2.6 8.8E-05 43.1 2.3 21 24-44 2-22 (241)
448 3pxg_A Negative regulator of g 65.3 4.5 0.00015 46.0 4.5 29 16-44 191-221 (468)
449 3gd7_A Fusion complex of cysti 65.3 2.7 9.1E-05 46.6 2.5 22 22-43 45-66 (390)
450 3cf2_A TER ATPase, transitiona 64.9 5 0.00017 48.7 4.9 17 25-41 512-528 (806)
451 1w36_B RECB, exodeoxyribonucle 64.7 7 0.00024 49.9 6.6 57 26-82 18-81 (1180)
452 3hjn_A DTMP kinase, thymidylat 64.5 2.9 9.8E-05 41.6 2.3 18 27-44 3-20 (197)
453 2x8a_A Nuclear valosin-contain 64.4 2.8 9.4E-05 44.0 2.3 19 25-43 45-63 (274)
454 3tui_C Methionine import ATP-b 63.9 2.4 8.3E-05 46.5 1.8 21 22-42 52-72 (366)
455 3r20_A Cytidylate kinase; stru 63.7 4.2 0.00014 41.6 3.5 22 23-44 8-29 (233)
456 1svm_A Large T antigen; AAA+ f 63.6 3.6 0.00012 45.4 3.1 24 22-45 167-190 (377)
457 2c9o_A RUVB-like 1; hexameric 63.6 6.1 0.00021 44.6 5.2 28 17-44 52-83 (456)
458 1um8_A ATP-dependent CLP prote 63.5 3.8 0.00013 44.9 3.4 20 24-43 72-91 (376)
459 1uj2_A Uridine-cytidine kinase 63.5 3.6 0.00012 42.3 3.0 19 26-44 24-42 (252)
460 1g8p_A Magnesium-chelatase 38 63.5 3.4 0.00012 44.4 3.0 20 23-42 44-63 (350)
461 3cr8_A Sulfate adenylyltranfer 63.4 2.4 8.2E-05 49.2 1.8 23 21-43 366-388 (552)
462 1oxx_K GLCV, glucose, ABC tran 63.3 1.8 6.2E-05 47.3 0.7 21 22-42 29-49 (353)
463 2zan_A Vacuolar protein sortin 63.0 7.1 0.00024 44.0 5.6 21 24-44 167-187 (444)
464 3ake_A Cytidylate kinase; CMP 63.0 3.9 0.00013 40.2 3.0 19 26-44 4-22 (208)
465 4a82_A Cystic fibrosis transme 62.9 2.5 8.6E-05 49.5 1.8 20 22-41 365-384 (578)
466 1tf7_A KAIC; homohexamer, hexa 62.9 6.9 0.00024 45.1 5.6 43 21-66 278-320 (525)
467 2f6r_A COA synthase, bifunctio 62.8 3.7 0.00013 43.2 3.0 21 25-45 76-96 (281)
468 1pui_A ENGB, probable GTP-bind 62.8 3.1 0.00011 41.0 2.3 20 22-41 24-43 (210)
469 3sop_A Neuronal-specific septi 62.7 3.2 0.00011 43.5 2.4 20 26-45 4-23 (270)
470 3io5_A Recombination and repai 62.5 4.4 0.00015 43.5 3.4 26 23-49 28-53 (333)
471 1sq5_A Pantothenate kinase; P- 62.4 5.8 0.0002 42.3 4.5 22 22-43 78-99 (308)
472 1ko7_A HPR kinase/phosphatase; 62.4 6.4 0.00022 42.1 4.7 41 6-46 110-166 (314)
473 3tqf_A HPR(Ser) kinase; transf 62.3 4.2 0.00014 39.6 2.9 24 23-46 15-38 (181)
474 4hlc_A DTMP kinase, thymidylat 62.1 4 0.00014 40.8 2.9 19 25-43 3-21 (205)
475 2oxc_A Probable ATP-dependent 62.0 18 0.00062 36.2 8.0 77 283-366 89-171 (230)
476 3qks_A DNA double-strand break 61.9 4.3 0.00015 40.4 3.1 19 24-42 23-41 (203)
477 3htx_A HEN1; HEN1, small RNA m 61.9 8.7 0.0003 46.4 6.1 43 835-877 53-95 (950)
478 3oiy_A Reverse gyrase helicase 61.5 7.4 0.00025 43.0 5.3 79 284-366 62-144 (414)
479 2r62_A Cell division protease 61.2 5.1 0.00017 41.3 3.7 21 24-44 44-64 (268)
480 1lkx_A Myosin IE heavy chain; 61.1 6.3 0.00022 46.9 4.8 36 6-41 71-111 (697)
481 3p32_A Probable GTPase RV1496/ 60.8 14 0.00048 40.1 7.3 41 25-68 80-120 (355)
482 2npi_A Protein CLP1; CLP1-PCF1 60.8 3.1 0.00011 47.2 2.1 24 20-43 134-157 (460)
483 3b60_A Lipid A export ATP-bind 60.5 2.9 9.9E-05 49.0 1.8 22 22-43 367-388 (582)
484 3qf4_A ABC transporter, ATP-bi 60.4 2.9 9.9E-05 49.0 1.8 21 22-42 367-387 (587)
485 1w9i_A Myosin II heavy chain; 60.3 6.7 0.00023 47.2 4.8 39 5-43 148-191 (770)
486 2dyk_A GTP-binding protein; GT 60.1 5.1 0.00018 37.1 3.2 20 26-45 3-22 (161)
487 2yv5_A YJEQ protein; hydrolase 59.7 5.7 0.00019 42.2 3.8 25 21-45 162-186 (302)
488 3qf4_B Uncharacterized ABC tra 59.7 2.7 9.2E-05 49.4 1.3 21 22-42 379-399 (598)
489 1g41_A Heat shock protein HSLU 59.6 5.2 0.00018 45.0 3.6 20 24-43 50-69 (444)
490 3qkt_A DNA double-strand break 59.5 3.7 0.00013 44.5 2.3 19 24-42 23-41 (339)
491 2ce2_X GTPase HRAS; signaling 59.5 5.3 0.00018 37.0 3.2 20 26-45 5-24 (166)
492 3ld9_A DTMP kinase, thymidylat 59.4 4.9 0.00017 40.8 3.0 23 23-45 20-42 (223)
493 1q3t_A Cytidylate kinase; nucl 59.3 5.6 0.00019 40.3 3.6 23 22-44 14-36 (236)
494 4anj_A Unconventional myosin-V 59.1 6.5 0.00022 48.9 4.6 37 5-41 120-161 (1052)
495 3b5x_A Lipid A export ATP-bind 58.8 4.1 0.00014 47.7 2.7 22 22-43 367-388 (582)
496 1c9k_A COBU, adenosylcobinamid 58.7 5.2 0.00018 39.1 3.0 19 27-45 2-20 (180)
497 3m6a_A ATP-dependent protease 58.6 4.3 0.00015 47.1 2.8 20 24-43 108-127 (543)
498 1nij_A Hypothetical protein YJ 58.3 4 0.00014 43.8 2.2 19 25-43 5-23 (318)
499 4db1_A Myosin-7; S1DC, cardiac 57.7 7.4 0.00025 46.9 4.6 37 5-41 147-188 (783)
500 1z2a_A RAS-related protein RAB 57.6 6 0.00021 36.9 3.2 20 26-45 7-26 (168)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.4e-101 Score=940.73 Aligned_cols=629 Identities=34% Similarity=0.572 Sum_probs=556.6
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
++.|..+|++.++++|..++..+++++|+|||||||||++|+++++..+..+. ...|+|++|+|++|.|+++++++++
T Consensus 87 l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~--g~~ilvl~P~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 87 LKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE--NTQVACTQPRRVAAMSVAQRVAEEM 164 (773)
T ss_dssp HHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG--TCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC--CceEEecCchHHHHHHHHHHHHHHh
Confidence 46688999999999999999999999999999999999999998876543322 2468889999999999999999999
Q ss_pred CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
+..++..+||.++++......++|+|+|+|++++.+..++.+.++++|||||+|+|+++.|+++.+++.+...+++.++|
T Consensus 165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 99999999999999888778899999999999999998899999999999999999999999999999999999999999
Q ss_pred EeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 162 LMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 162 lmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
+||||++.+.+.+||++++++.++|+.+||+.+|.+.. ..++ ++
T Consensus 245 l~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~-------------~~~~-----------------------~~ 288 (773)
T 2xau_A 245 IMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF-------------QRDY-----------------------LD 288 (773)
T ss_dssp EEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSC-------------CSCH-----------------------HH
T ss_pred EEeccccHHHHHHHhcCCCcccccCcccceEEEEecCC-------------chhH-----------------------HH
Confidence 99999999999999999999999999999999886531 0000 00
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCc--c--CCCCCc
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANR--I--LGDPTR 317 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~--~--~~~~~~ 317 (901)
.. ...+..++.....|++||||+++++++.+++.|.... . ......
T Consensus 289 ~~------------------------------l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~ 338 (773)
T 2xau_A 289 SA------------------------------IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP 338 (773)
T ss_dssp HH------------------------------HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HH------------------------------HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 00 1123334444568999999999999999999997511 0 011235
Q ss_pred eEEEEecCCCCHHHHHhhcCCCC-----CCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccH
Q 046397 318 VLLLTCHGSMASSEQRLIFDEPE-----SGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIST 392 (901)
Q Consensus 318 ~~v~~lhs~l~~~eq~~i~~~f~-----~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk 392 (901)
+.+.++||+|+.++|.++++.|+ +|.++||||||++|+|||||+|++|||+|++|.+.||+..++..|.+.|+|+
T Consensus 339 ~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~ 418 (773)
T 2xau_A 339 LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418 (773)
T ss_dssp EEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCH
T ss_pred eEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCH
Confidence 77999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHhhhcCCCCCCceEEcCCcchh-hhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHH
Q 046397 393 VSAQQRRGRAGRVQPGECYRLYPRCVY-DAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIE 471 (901)
Q Consensus 393 a~~~QR~GRAGR~~~G~c~~L~s~~~~-~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~ 471 (901)
++|.||+|||||.++|.||+||++..+ +.|.++..|||+|.+|.+++|+++.++++++..| .+++||+.+++..|++
T Consensus 419 ~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f--~~~~~p~~~~i~~a~~ 496 (773)
T 2xau_A 419 ASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPPAPETMMRALE 496 (773)
T ss_dssp HHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGC--CCSSCCCHHHHHHHHH
T ss_pred HHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhc--cccCCCcHHHHHHHHH
Confidence 999999999999999999999999999 5699999999999999999999999999999888 8999999999999999
Q ss_pred HHHHcCCccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcCCCC
Q 046397 472 YLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDY 551 (901)
Q Consensus 472 ~L~~~gald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~~~~ 551 (901)
.|..+||||++|+||++|+.|+.||+||++||||+.|+.|+|++++++|||+|++++||+.|.+++++++.+|+.|++..
T Consensus 497 ~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~ 576 (773)
T 2xau_A 497 ELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD 576 (773)
T ss_dssp HHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTT
T ss_pred HHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhcccc-hHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHh
Q 046397 552 SDHLALVRAFEGWKDAERGLAG-YEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICY 630 (901)
Q Consensus 552 sDhl~~l~af~~w~~~~~~~~~-~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~a 630 (901)
|||++++++|++|.+....+.. .+||++||||+++|+++.++|+||.++|.+.|+..... ..+ ...++..|+++||+
T Consensus 577 ~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~l~~ 654 (773)
T 2xau_A 577 GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTT-DYE-SPKYFDNIRKALAS 654 (773)
T ss_dssp BHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-CTT-STTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-CCC-chhhHHHHHHHHHH
Confidence 9999999999999765422233 68999999999999999999999999999999864321 111 23456789999999
Q ss_pred ccCCCccccccCCCCCccccccCC-eEEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCcccc
Q 046397 631 GLYPGISSIVQNGKSSSLKTMEDG-QVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQ 708 (901)
Q Consensus 631 glypnva~~~~~~~~~~~~t~~~~-~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~~~ 708 (901)
|||||||+.... ...|.+..++ .|+|||+|++.. .++||||+|++.|++.|||++|+|+|.||..+++....
T Consensus 655 g~~~~~a~~~~~--~~~y~~~~~~~~~~ihp~s~l~~----~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~ 727 (773)
T 2xau_A 655 GFFMQVAKKRSG--AKGYITVKDNQDVLIHPSTVLGH----DAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYD 727 (773)
T ss_dssp HHTTSEEEECCC----CEEETTTCCEEEECTTCCCCT----TCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTSC
T ss_pred hChHhheeeccC--CCcceEeeCCCEEEECCCcccCC----CCCEEEEEEeeccchhheeecccCCHHHHHHHHHHhee
Confidence 999999986532 2238776554 589999999953 26899999999999999999999999999999987653
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.3e-54 Score=527.27 Aligned_cols=524 Identities=16% Similarity=0.129 Sum_probs=367.3
Q ss_pred CcHHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH--HHhCCcc
Q 046397 9 PAYKEKNRLLTA-ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA--SERGEKL 85 (901)
Q Consensus 9 Pi~~~q~~il~~-i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva--~e~~~~~ 85 (901)
..+++|.++++. +.++++++|+||||||||+++++++++.+... ..+++|++|+|+||.|+++++. .++|..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i~P~r~La~q~~~~~~~~~~~g~~v 105 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYVTPLRALTNEKYLTFKDWELIGFKV 105 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEECSCHHHHHHHHHHHGGGGGGTCCE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEE
Confidence 468899999999 78999999999999999999999999876532 2489999999999999999993 2345566
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCC-CCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRN-LKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~-l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
+..+|+..+.+... .+++|+|||||+|++.+..++. +.++++|||||+|+.+ .+.....++.++.+.+++|+|+||
T Consensus 106 ~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~--~~~~~~~l~~i~~~~~~~~ii~lS 182 (715)
T 2va8_A 106 AMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN--DPERGPVVESVTIRAKRRNLLALS 182 (715)
T ss_dssp EECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG--CTTTHHHHHHHHHHHHTSEEEEEE
T ss_pred EEEeCCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC--CcccchHHHHHHHhcccCcEEEEc
Confidence 66667655554433 3789999999999999988874 8999999999999843 222334455555555589999999
Q ss_pred cCCC-HHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHH
Q 046397 165 ATLD-AELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDT 243 (901)
Q Consensus 165 ATl~-~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 243 (901)
||++ .+.+++||+ ++.+..+++.+|+..++..+......+... +
T Consensus 183 ATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~-------~--------------------------- 227 (715)
T 2va8_A 183 ATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVI-------F--------------------------- 227 (715)
T ss_dssp SCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEE-------E---------------------------
T ss_pred CCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeee-------c---------------------------
Confidence 9995 899999996 678889999999987765321000000000 0
Q ss_pred HHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC---CC------
Q 046397 244 LKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL---GD------ 314 (901)
Q Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~---~~------ 314 (901)
.......+. ..+.+..++..+. ..++++|||++++++++.+++.|.+.... ..
T Consensus 228 ---------~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 289 (715)
T 2va8_A 228 ---------KDNTTKKVH-------GDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEI 289 (715)
T ss_dssp ---------TTSCEEEEE-------SSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHH
T ss_pred ---------Ccchhhhcc-------cchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 000000000 0011112222222 35689999999999999999999864211 00
Q ss_pred --------------------CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccc
Q 046397 315 --------------------PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKET 374 (901)
Q Consensus 315 --------------------~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~ 374 (901)
.....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ..
T Consensus 290 ~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~ 365 (715)
T 2va8_A 290 LKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IY 365 (715)
T ss_dssp HHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-
T ss_pred HHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----Ce
Confidence 001248899999999999999999999999999999999999999999999986 34
Q ss_pred ccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcch-hhhccc---CCCCcccccCccc------hhhh
Q 046397 375 SYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCV-YDAFAE---YQLPEILRTPLQS------LCLQ 441 (901)
Q Consensus 375 ~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~-~~~l~~---~~~PEi~r~~L~~------~~L~ 441 (901)
.||+..+.. ..|+|.++|.||+|||||.+ +|.||++++... +..+.+ ...||+++++|.. .++.
T Consensus 366 ~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~ 442 (715)
T 2va8_A 366 RFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLG 442 (715)
T ss_dssp ----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHH
T ss_pred eccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHH
Confidence 577544332 57899999999999999997 899999998765 333222 4679999999876 5566
Q ss_pred hhccCC----CCHHHHhhhhcC--CChHHHHHHHHHHHHHcCCccCCC---ccchhhhhhhcCCCChHHHHHHHHhhhc-
Q 046397 442 IKSLRL----GTIAGFLSRALQ--SPELLAVQNAIEYLKIIGALDHNE---ELTVLGQYLAMLPMEPKLGKMLILGAIF- 511 (901)
Q Consensus 442 ~k~l~~----~~~~~fl~~~l~--pP~~~~v~~al~~L~~~gald~~~---~lT~lG~~la~lpl~p~~~k~ll~~~~~- 511 (901)
+...+. .++.+|+...+- +|+...+..|++.|.+.|+|+.++ .+|++|+.++.+|++|++|+|++.+...
T Consensus 443 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~ 522 (715)
T 2va8_A 443 ILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGH 522 (715)
T ss_dssp HHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHS
T ss_pred HHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhc
Confidence 666653 255666653332 556677999999999999998774 8999999999999999999999999888
Q ss_pred --CChHHHHHHHHhhc-CCCCccCCCChHHHHHHHHh---h-cC-CCC-----C---cHHHHHHHHHHHHHHhhcccchH
Q 046397 512 --NCLEPVLTIVAGLS-VRDPFLAPMDKKDLAEAAKS---Q-FS-HDY-----S---DHLALVRAFEGWKDAERGLAGYE 575 (901)
Q Consensus 512 --~cl~~~l~iaa~ls-~~~~f~~p~~~~~~~~~~~~---~-f~-~~~-----s---Dhl~~l~af~~w~~~~~~~~~~~ 575 (901)
.|..+++.|+|+.+ +.++|+.|.++....+.... . +. ... . .|+-..-+.+.|.+. .....
T Consensus 523 ~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~---~~~~~ 599 (715)
T 2va8_A 523 KASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDE---VDEDT 599 (715)
T ss_dssp CCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTT---CCHHH
T ss_pred cCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcC---CCHHH
Confidence 79999999888766 46777766443332222110 0 11 111 1 132233334555432 23456
Q ss_pred HHHhhcCCCcchhhHHHHHHHHHHHHH
Q 046397 576 YCWKNFLSAPSMKVIDSLRKEFLSLLK 602 (901)
Q Consensus 576 ~c~~~~l~~~~l~~~~~~r~ql~~~l~ 602 (901)
+|.++.+....+..+.+.-..|.+.+.
T Consensus 600 i~~~y~~~~gdl~~l~~~a~~l~~a~~ 626 (715)
T 2va8_A 600 ILSKYNIGSGDLRNMVETMDWLTYSAY 626 (715)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHHH
Confidence 888888877777666554444444433
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9e-52 Score=505.35 Aligned_cols=500 Identities=17% Similarity=0.182 Sum_probs=366.2
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH--HhCCccC
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS--ERGEKLG 86 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~--e~~~~~g 86 (901)
..+++|.++++.+.++++++|+||||||||+++++++++.+.. ..+++|++|+|+||.|+++++.. .+|..++
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~ 99 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVPLRALAGEKYESFKKWEKIGLRIG 99 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEE
Confidence 4577899999999999999999999999999999999987642 23688888999999999999932 2345566
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCC-CCCceEEEEecCcc-----cCcchhHHHHHHHHHHhhCCCceE
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRN-LKGVTHVIVDEVHE-----RGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~-l~~~~~IIIDE~He-----R~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
..+|+..+.+... ..++|+|||||++.+.+..++. +.++++|||||+|+ |+...+.++..++ ...+++|+
T Consensus 100 ~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~~~~i 175 (702)
T 2p6r_A 100 ISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR---RMNKALRV 175 (702)
T ss_dssp EECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH---HHCTTCEE
T ss_pred EEeCCCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHH---hcCcCceE
Confidence 6666655554433 4789999999999999988774 89999999999997 5555555554444 35678999
Q ss_pred EEeccCCC-HHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHH
Q 046397 161 VLMSATLD-AELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASA 239 (901)
Q Consensus 161 IlmSATl~-~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (901)
|+||||++ .+.+.+||+ ++.+..+++.+|+..++..... ..+. +. .....
T Consensus 176 i~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~--~~~~--------~~--------~~~~~---------- 226 (702)
T 2p6r_A 176 IGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGT--LELF--------DG--------AFSTS---------- 226 (702)
T ss_dssp EEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSE--EEEE--------ET--------TEEEE----------
T ss_pred EEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCe--eecc--------Cc--------chhhh----------
Confidence 99999995 889999997 7788999999999876542100 0000 00 00000
Q ss_pred HHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCcc--CCCC--
Q 046397 240 VEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRI--LGDP-- 315 (901)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~--~~~~-- 315 (901)
..+ . +..++.... ..++++||||+++++++.+++.|.+... ....
T Consensus 227 --------------------------~~~--~-~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~ 275 (702)
T 2p6r_A 227 --------------------------RRV--K-FEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGL 275 (702)
T ss_dssp --------------------------EEC--C-HHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSH
T ss_pred --------------------------hhh--h-HHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHH
Confidence 000 0 111122222 2568999999999999999999875310 0000
Q ss_pred -------------------CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccccc
Q 046397 316 -------------------TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSY 376 (901)
Q Consensus 316 -------------------~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~y 376 (901)
....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ...|
T Consensus 276 ~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~y 351 (702)
T 2p6r_A 276 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRF 351 (702)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEE
T ss_pred HHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceee
Confidence 01236789999999999999999999999999999999999999999999985 3457
Q ss_pred ccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcchhhhccc---CCCCcccccCccc------hhhhhhc
Q 046397 377 DALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCVYDAFAE---YQLPEILRTPLQS------LCLQIKS 444 (901)
Q Consensus 377 d~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~~~~l~~---~~~PEi~r~~L~~------~~L~~k~ 444 (901)
|. . ..|+|.++|.||+|||||.+ +|.||.++++..++.+.+ ...||+++++|.. .++....
T Consensus 352 d~---~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~ 424 (702)
T 2p6r_A 352 DG---Y----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIIC 424 (702)
T ss_dssp SS---S----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHH
T ss_pred CC---C----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHH
Confidence 71 1 56899999999999999997 899999999887665332 5679999999876 4455555
Q ss_pred cCC----CCHHHHhhhhc-----CCChHHHHHHHHHHHHHcCCccCC--CccchhhhhhhcCCCChHHHHHHHHhhhc--
Q 046397 445 LRL----GTIAGFLSRAL-----QSPELLAVQNAIEYLKIIGALDHN--EELTVLGQYLAMLPMEPKLGKMLILGAIF-- 511 (901)
Q Consensus 445 l~~----~~~~~fl~~~l-----~pP~~~~v~~al~~L~~~gald~~--~~lT~lG~~la~lpl~p~~~k~ll~~~~~-- 511 (901)
.+. .++.+|+...+ ++|..+.+..|++.|.+.|+|+.+ +.+|++|+.++.+|++|++++|++.+...
T Consensus 425 ~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~ 504 (702)
T 2p6r_A 425 DGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRME 504 (702)
T ss_dssp HTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCC
T ss_pred cCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhccc
Confidence 552 24555553222 378889999999999999999987 78999999999999999999999999988
Q ss_pred CChHHHHHHHHhhcC-CCCccCCCChHHHHHHH-H--hhc-CCC--CC-------cHHHHHHHHHHHHHHhhcccchHHH
Q 046397 512 NCLEPVLTIVAGLSV-RDPFLAPMDKKDLAEAA-K--SQF-SHD--YS-------DHLALVRAFEGWKDAERGLAGYEYC 577 (901)
Q Consensus 512 ~cl~~~l~iaa~ls~-~~~f~~p~~~~~~~~~~-~--~~f-~~~--~s-------Dhl~~l~af~~w~~~~~~~~~~~~c 577 (901)
.|..+++.|+|+.+. .+.++.+.+ ....+.. + ..+ ..+ .. .|+-..-+.+.|.+. ..-...|
T Consensus 505 ~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~---~~l~~i~ 580 (702)
T 2p6r_A 505 LSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEE---KDEDEIC 580 (702)
T ss_dssp CCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTT---CCHHHHH
T ss_pred CCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcC---CChHHHH
Confidence 899999999887764 567777766 3222222 1 122 111 11 344344455666542 2234577
Q ss_pred HhhcCCCcchhhHHH
Q 046397 578 WKNFLSAPSMKVIDS 592 (901)
Q Consensus 578 ~~~~l~~~~l~~~~~ 592 (901)
.++++...-++.+.+
T Consensus 581 ~~~~~~~gdl~~i~~ 595 (702)
T 2p6r_A 581 AKYGIAPGDLRRIVE 595 (702)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHhCCcHHhHHHHHH
Confidence 777775555554443
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.8e-49 Score=480.70 Aligned_cols=446 Identities=16% Similarity=0.121 Sum_probs=325.0
Q ss_pred CcHHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH--HhCCcc
Q 046397 9 PAYKEKNRLLTA-ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS--ERGEKL 85 (901)
Q Consensus 9 Pi~~~q~~il~~-i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~--e~~~~~ 85 (901)
..+++|.++++. +.++++++|+||||||||+++++++++.....+ .+++|++|+|+||.|++++++. ++|..+
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----~~~l~i~P~raLa~q~~~~~~~l~~~g~~v 98 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG----GKAVYIVPLKALAEEKFQEFQDWEKIGLRV 98 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC----SEEEEECSSGGGHHHHHHHTGGGGGGTCCE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC----CEEEEEcCcHHHHHHHHHHHHHHHhcCCEE
Confidence 678999999998 889999999999999999999999998876432 4789999999999999999952 234444
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCc-----ccCcchhHHHHHHHHHHhhCCCce
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVH-----ERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~H-----eR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
+..+| .+..+......++|+||||+++.+.+..++ .+.++++|||||+| +|+...+.++..++ ++++
T Consensus 99 ~~~~G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ 171 (720)
T 2zj8_A 99 AMATG-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQ 171 (720)
T ss_dssp EEECS-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBE
T ss_pred EEecC-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------cCCe
Confidence 43334 112222222468999999999999888876 48899999999999 55555554444333 3799
Q ss_pred EEEeccCC-CHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHH
Q 046397 160 LVLMSATL-DAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIAS 238 (901)
Q Consensus 160 iIlmSATl-~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (901)
+|+||||+ +.+.+.+||+ ++.+..+++..|+...+..+.. ..+ .. . . ..
T Consensus 172 ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~--~~~--~~-~----------------~-~~------- 221 (720)
T 2zj8_A 172 IIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGF--VTW--ED-G----------------S-ID------- 221 (720)
T ss_dssp EEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTE--EEE--TT-S----------------C-EE-------
T ss_pred EEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCe--eec--cc-c----------------c-hh-------
Confidence 99999999 6889999996 5667788888888775532100 000 00 0 0 00
Q ss_pred HHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC--C---
Q 046397 239 AVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL--G--- 313 (901)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~--~--- 313 (901)
. .....+ ++.++. ..++++||||+++++++.++..|.+.... .
T Consensus 222 ------------------------~--~~~~~~----~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~ 269 (720)
T 2zj8_A 222 ------------------------R--FSSWEE----LVYDAI--RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPE 269 (720)
T ss_dssp ------------------------E--CSSTTH----HHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred ------------------------h--hhHHHH----HHHHHH--hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhh
Confidence 0 000011 122222 24689999999999999999998753110 0
Q ss_pred ---------------------CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcc
Q 046397 314 ---------------------DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAK 372 (901)
Q Consensus 314 ---------------------~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k 372 (901)
......+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+.+
T Consensus 270 ~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~--- 346 (720)
T 2zj8_A 270 IRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI--- 346 (720)
T ss_dssp HHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS---
T ss_pred HHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC---
Confidence 00012388999999999999999999999999999999999999999999999854
Q ss_pred ccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcchhh----hcccCCCCcccccCcc------chh
Q 046397 373 ETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCVYD----AFAEYQLPEILRTPLQ------SLC 439 (901)
Q Consensus 373 ~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~~~----~l~~~~~PEi~r~~L~------~~~ 439 (901)
..||. .+ ..|+|.++|.||+|||||.+ +|.||.+++...++ .+.....++ .+.++. ..+
T Consensus 347 -~~yd~-~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~-i~s~l~~~~~l~~~l 418 (720)
T 2zj8_A 347 -WRYSD-FG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEK-LFSQLSNESNLRSQV 418 (720)
T ss_dssp -EECCS-SS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCC-CCCCTTCHHHHHHHH
T ss_pred -eeecC-CC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCC-cEeecCchhhHHHHH
Confidence 33662 11 25789999999999999986 79999999987643 233333333 334432 233
Q ss_pred hhhhccCC----CCHHHHhhhhc-------CCChHHHHHHHHHHHHHcCCcc-CCC---ccchhhhhhhcCCCChHHHHH
Q 046397 440 LQIKSLRL----GTIAGFLSRAL-------QSPELLAVQNAIEYLKIIGALD-HNE---ELTVLGQYLAMLPMEPKLGKM 504 (901)
Q Consensus 440 L~~k~l~~----~~~~~fl~~~l-------~pP~~~~v~~al~~L~~~gald-~~~---~lT~lG~~la~lpl~p~~~k~ 504 (901)
+.....+. .++.+|+...+ ++|..+.+..|++.|...|+|+ .++ .+|++|+.++.+|++|.++++
T Consensus 419 l~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~ 498 (720)
T 2zj8_A 419 LALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKM 498 (720)
T ss_dssp HHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHH
Confidence 33333332 24555543222 3344578999999999999998 655 799999999999999999999
Q ss_pred HHHhhhc----CChHHHHHHHHhhcC-CCCccCCCChHH
Q 046397 505 LILGAIF----NCLEPVLTIVAGLSV-RDPFLAPMDKKD 538 (901)
Q Consensus 505 ll~~~~~----~cl~~~l~iaa~ls~-~~~f~~p~~~~~ 538 (901)
++.+... .|..++|+|+|+++. .+.|+.|.+...
T Consensus 499 ~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~ 537 (720)
T 2zj8_A 499 FKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFER 537 (720)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHH
Confidence 9999887 899999999998885 677777654433
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=417.59 Aligned_cols=246 Identities=27% Similarity=0.498 Sum_probs=213.2
Q ss_pred CCHHHHhhhhcCCChHHHHHHHHHHHHHcCCccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCC
Q 046397 448 GTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVR 527 (901)
Q Consensus 448 ~~~~~fl~~~l~pP~~~~v~~al~~L~~~gald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~ 527 (901)
|+...+|..++|||+.+++.+|++.|..+||||++|+||++|+.|++||+||++||||+.|+.++|++++++|||+||++
T Consensus 2 g~~~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~ 81 (270)
T 3i4u_A 2 GDRGPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81 (270)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CCchhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCC
Confidence 45556666669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHhhcccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCC
Q 046397 528 DPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLV 607 (901)
Q Consensus 528 ~~f~~p~~~~~~~~~~~~~f~~~~sDhl~~l~af~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~ 607 (901)
+||+.|.+++++++++|++|++..|||++++|+|++|.+.. ...+||++||||+++|+++.++|+||.++|++.|+.
T Consensus 82 ~~f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~---~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~ 158 (270)
T 3i4u_A 82 NVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK---FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLD 158 (270)
T ss_dssp CCBCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTT---TCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcC---chhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999998753 357899999999999999999999999999998874
Q ss_pred CCCCCccccCCCCHHHHHHHHHhccCCCccccccCCCCCccccccCC-eEEEccCCccCCcCCCCCCeEEEEEEeeecce
Q 046397 608 DCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDG-QVFLYSNSVNARESEIPYPWLVFNEKMKVNSV 686 (901)
Q Consensus 608 ~~~~~~~n~~s~~~~li~a~l~aglypnva~~~~~~~~~~~~t~~~~-~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~ 686 (901)
. +..+.++..|+++||+|||||||+... ...|+|..++ .|+|||||++++. +++||||+|++.|++.
T Consensus 159 ~------~s~~~~~~~i~~~L~aG~~~nvA~~~~---~~~Y~~~~~~~~v~iHPsS~L~~~---~p~wvvy~Elv~Tsk~ 226 (270)
T 3i4u_A 159 V------VSCGKSTVRVQKAICSGFFRNAAKKDP---QEGYRTLIDQQVVYIHPSSALFNR---QPEWVVYHELVLTTKE 226 (270)
T ss_dssp C------CCCTTCTHHHHHHHHHHHGGGEEEECS---SSSEEETTTCCEEEECTTSTTTTS---CCSEEEEEEEEESSSE
T ss_pred c------CCCcchHHHHHHHHHHHhHHHHheeCC---CCceEEccCCCEEEECchhhhcCC---CCCEEEEEehhhhhHh
Confidence 2 223456788999999999999998643 2468776655 5999999999863 4689999999999999
Q ss_pred eEeccCCCChHHHHHhcCcccc
Q 046397 687 FLKDSTAVSDSVLLLFGGSISQ 708 (901)
Q Consensus 687 ~ir~~t~V~p~~llLfgg~~~~ 708 (901)
|||++|.|+|.||..+++....
T Consensus 227 y~r~vt~I~p~wL~~~ap~~~~ 248 (270)
T 3i4u_A 227 YMREVTTIDPRWLVEFAPAFFK 248 (270)
T ss_dssp EEEEEEECCHHHHHHHCTTTEE
T ss_pred HHHhccccCHHHHHHHhHHHhc
Confidence 9999999999999999998653
No 6
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.9e-38 Score=367.90 Aligned_cols=298 Identities=20% Similarity=0.220 Sum_probs=214.3
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEE
Q 046397 14 KNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKV 93 (901)
Q Consensus 14 q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~v 93 (901)
++...+++.++++++++||||||||+++++++++.+... .++++|++|+|+||.|+++++. |..+++..
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~ 79 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----RLRTAVLAPTRVVAAEMAEALR-------GLPVRYQT 79 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----TCCEEEEECSHHHHHHHHHHTT-------TSCEEECC
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----CCcEEEECchHHHHHHHHHHhc-------CceEeEEe
Confidence 344456678899999999999999999999999877642 2467777899999999999884 33344433
Q ss_pred eccc-ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHH
Q 046397 94 RLEG-MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELF 172 (901)
Q Consensus 94 r~e~-~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f 172 (901)
.... ...+...+.++|.+.+.+.+..++.+.++++|||||||+++...++.+..+..... .++.++|+||||++.+..
T Consensus 80 ~~~~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~~ 158 (459)
T 2z83_A 80 SAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTTD 158 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCC
T ss_pred cccccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcchh
Confidence 2221 12345678899999999999998899999999999999987777777777766543 468999999999975421
Q ss_pred HhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhccccc
Q 046397 173 SSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEY 252 (901)
Q Consensus 173 ~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 252 (901)
.-...+.|+..+.. .+|.. ..
T Consensus 159 ~~~~~~~pi~~~~~-~~~~~-------------------~~--------------------------------------- 179 (459)
T 2z83_A 159 PFPDSNAPIHDLQD-EIPDR-------------------AW--------------------------------------- 179 (459)
T ss_dssp SSCCCSSCEEEEEC-CCCSS-------------------CC---------------------------------------
T ss_pred hhccCCCCeEEecc-cCCcc-------------------hh---------------------------------------
Confidence 10111222221110 00000 00
Q ss_pred chhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHH
Q 046397 253 SSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQ 332 (901)
Q Consensus 253 ~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq 332 (901)
...++ .+. ...+++||||+++++++.+++.|...+ +.+..+||. +|
T Consensus 180 --------------~~~~~-------~l~--~~~~~~LVF~~s~~~~~~l~~~L~~~g-------~~v~~lh~~----~R 225 (459)
T 2z83_A 180 --------------SSGYE-------WIT--EYAGKTVWFVASVKMGNEIAMCLQRAG-------KKVIQLNRK----SY 225 (459)
T ss_dssp --------------SSCCH-------HHH--HCCSCEEEECSCHHHHHHHHHHHHHTT-------CCEEEESTT----CC
T ss_pred --------------HHHHH-------HHH--hcCCCEEEEeCChHHHHHHHHHHHhcC-------CcEEecCHH----HH
Confidence 00000 011 136899999999999999999998763 336789985 78
Q ss_pred HhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccc--cCCCccccccccccHhcHHHHhhhcCCCC--CC
Q 046397 333 RLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYD--ALNNTSCLLPSWISTVSAQQRRGRAGRVQ--PG 408 (901)
Q Consensus 333 ~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd--~~~~~~~l~~~~iSka~~~QR~GRAGR~~--~G 408 (901)
.++++.|++|+++|||||+++++|||||+ ++|||+|+.+...|+ ....+..+...|.|+++|.||+|||||.+ +|
T Consensus 226 ~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G 304 (459)
T 2z83_A 226 DTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG 304 (459)
T ss_dssp CCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC
T ss_pred HHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC
Confidence 89999999999999999999999999999 999999988877654 33333333558999999999999999995 89
Q ss_pred ceEEcCCcc
Q 046397 409 ECYRLYPRC 417 (901)
Q Consensus 409 ~c~~L~s~~ 417 (901)
.||.+++..
T Consensus 305 ~~~~~~~~~ 313 (459)
T 2z83_A 305 DEYHYGGAT 313 (459)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEccc
Confidence 999999875
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=388.37 Aligned_cols=375 Identities=19% Similarity=0.182 Sum_probs=246.5
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 6 RNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 6 ~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
..++.+.+|.++++.+.++++++|+||||||||+++.+++++.+. .+ .+++|++|+|+||.|+++++.+.++
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g--~rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---NK--QRVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---TT--CEEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---cC--CeEEEEcCcHHHHHHHHHHHHHHhC---
Confidence 345788999999999999999999999999999999999988762 22 3678888999999999999988876
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEe
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLM 163 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlm 163 (901)
.||+ +..+.....+++|+|+|||+|++++..+. .+.++++|||||||.. .+..+. ..+..++. ..+++++|+|
T Consensus 253 --~Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l-~d~~rg-~~~e~ii~~l~~~~qvl~l 327 (1108)
T 3l9o_A 253 --DVGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM-RDKERG-VVWEETIILLPDKVRYVFL 327 (1108)
T ss_dssp --SEEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT-TSHHHH-HHHHHHHHHSCTTSEEEEE
T ss_pred --CccE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc-cccchH-HHHHHHHHhcCCCceEEEE
Confidence 3555 33344455678999999999999998876 4889999999999942 222222 22333333 4568999999
Q ss_pred ccCC-CHHHHHhhhC-----CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhH
Q 046397 164 SATL-DAELFSSYFG-----GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIA 237 (901)
Q Consensus 164 SATl-~~~~f~~yf~-----~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (901)
|||+ +...|.+|++ .+.++..+.+..|++.++............... ..+...............
T Consensus 328 SATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~~~~~l~~~------ 398 (1108)
T 3l9o_A 328 SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEK---STFREENFQKAMASISNQ------ 398 (1108)
T ss_dssp ECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETT---TEECHHHHHHHHTTC---------
T ss_pred cCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccc---cchhhhhHHHHHHHHHhh------
Confidence 9998 5567777765 356777788888887766432111000000000 000000000000000000
Q ss_pred HHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC--
Q 046397 238 SAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP-- 315 (901)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~-- 315 (901)
............... ...............+..++..+.. ...+++|||++++.+++.++..|...++....
T Consensus 399 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~ 472 (1108)
T 3l9o_A 399 --IGDDPNSTDSRGKKG---QTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 472 (1108)
T ss_dssp -------------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC---
T ss_pred --hcccccccccccccc---cccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHH
Confidence 000000000000000 0000000000012233344444433 45779999999999999999998653322110
Q ss_pred ------------------------------CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEE
Q 046397 316 ------------------------------TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFV 365 (901)
Q Consensus 316 ------------------------------~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~V 365 (901)
....|.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 473 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~V 552 (1108)
T 3l9o_A 473 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 552 (1108)
T ss_dssp -CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEE
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEE
Confidence 01127899999999999999999999999999999999999999999999
Q ss_pred EeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcch
Q 046397 366 IDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCV 418 (901)
Q Consensus 366 Id~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~ 418 (901)
|++..+ ||.. . ..|+|.++|.||+|||||.+ +|.||.+++...
T Consensus 553 I~~~~~----~d~~----~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 553 FTSVRK----WDGQ----Q--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp ESCSEE----ESSS----C--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred EecCcc----cCcc----c--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 984332 3332 2 34889999999999999997 899999998763
No 8
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.3e-38 Score=371.84 Aligned_cols=302 Identities=21% Similarity=0.211 Sum_probs=226.6
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
++.|..||++.+|++++..+.++++++++||||||||+++++++++. + .+++|++|||+||.|+++++++++
T Consensus 210 l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g--~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 210 METTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------G--YKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp HHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------T--CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred hhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------C--CeEEEEcchHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999998862 2 257788899999999999999999
Q ss_pred CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
+..++..+|+.. ....++|+|+|||+|++ ...-.+.++++|||||+|+++...+..+..+.+.+...+...++
T Consensus 282 g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 282 GIDPNIRTGVRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp SCCCEEECSSCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred CCCeeEEECcEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 988877777644 34568999999999853 12225778999999999998776666555555555544455588
Q ss_pred EeccCCCHHHHHhhhCCCcEEeeCC-ccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397 162 LMSATLDAELFSSYFGGATVINIPG-FTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240 (901)
Q Consensus 162 lmSATl~~~~f~~yf~~~~~i~i~g-r~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (901)
+||||++.. +. .+. ..+++...+... ...+
T Consensus 355 l~SAT~~~~-----i~------~~~p~i~~v~~~~~~~--------------i~~~------------------------ 385 (666)
T 3o8b_A 355 LATATPPGS-----VT------VPHPNIEEVALSNTGE--------------IPFY------------------------ 385 (666)
T ss_dssp EEESSCTTC-----CC------CCCTTEEEEECBSCSS--------------EEET------------------------
T ss_pred EECCCCCcc-----cc------cCCcceEEEeecccch--------------hHHH------------------------
Confidence 899998652 10 000 001111100000 0000
Q ss_pred HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL 320 (901)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v 320 (901)
...+. ......+++|||++++++++.+++.|.+.+ +.+
T Consensus 386 ------------------------~~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g-------~~v 423 (666)
T 3o8b_A 386 ------------------------GKAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGLG-------INA 423 (666)
T ss_dssp ------------------------TEEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTTT-------CCE
T ss_pred ------------------------Hhhhh-----------hhhccCCcEEEEeCCHHHHHHHHHHHHhCC-------CcE
Confidence 00000 011257899999999999999999998763 347
Q ss_pred EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccc----cccCCCccccccccccHhcHH
Q 046397 321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETS----YDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~----yd~~~~~~~l~~~~iSka~~~ 396 (901)
..+||+|++++ ++++..+||||||++|+||||| |++|||+|+.+... ||+..++.. ...|+|.++|.
T Consensus 424 ~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syi 494 (666)
T 3o8b_A 424 VAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRS 494 (666)
T ss_dssp EEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHH
T ss_pred EEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHH
Confidence 79999998764 3456679999999999999997 99999999888665 445555544 35799999999
Q ss_pred HHhhhcCCCCCCceEEcCCcchh
Q 046397 397 QRRGRAGRVQPGECYRLYPRCVY 419 (901)
Q Consensus 397 QR~GRAGR~~~G~c~~L~s~~~~ 419 (901)
||+|||||.++|. |.||++..+
T Consensus 495 QRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 495 QRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp HHHTTBCSSSCEE-EEESCCCCB
T ss_pred HHhccCCCCCCCE-EEEEecchh
Confidence 9999999988999 999987654
No 9
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-37 Score=360.76 Aligned_cols=300 Identities=16% Similarity=0.172 Sum_probs=224.1
Q ss_pred hcCCCcHHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 5 RRNLPAYKEKNRLLTAIS-QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~-~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
++.-|+ |+ +++.+. .+++++++||||||||+++..++++..+.. + .+++|++|+|+||.|+++++.
T Consensus 3 ~q~~~i---q~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~--~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 3 AMGEPD---YE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--R--LRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCSCC---CC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--T--CCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCc---HH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--C--CcEEEECCCHHHHHHHHHHhc-----
Confidence 455566 33 455554 455669999999999999888888776542 2 367777799999999998772
Q ss_pred ccCcEeeEEEeccc-ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEE
Q 046397 84 KLGESVGYKVRLEG-MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVL 162 (901)
Q Consensus 84 ~~g~~vGy~vr~e~-~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIl 162 (901)
|..++|...... ...+.+.|.++|++.+.+.+.+++.+.++++|||||+|+++...+..+.++... ...++.++|+
T Consensus 70 --g~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~ 146 (451)
T 2jlq_A 70 --GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIF 146 (451)
T ss_dssp --TSCEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEE
T ss_pred --CceeeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEE
Confidence 445566554432 334567899999999999999888999999999999998766666655555332 2456899999
Q ss_pred eccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHH
Q 046397 163 MSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVED 242 (901)
Q Consensus 163 mSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (901)
||||++.+....++++.+++.+. +..|... |.
T Consensus 147 ~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~-~~---------------------------------------------- 178 (451)
T 2jlq_A 147 MTATPPGSTDPFPQSNSPIEDIE-REIPERS-WN---------------------------------------------- 178 (451)
T ss_dssp ECSSCTTCCCSSCCCSSCEEEEE-CCCCSSC-CS----------------------------------------------
T ss_pred EccCCCccchhhhcCCCceEecC-ccCCchh-hH----------------------------------------------
Confidence 99999775544444444444332 1111100 00
Q ss_pred HHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEE
Q 046397 243 TLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLT 322 (901)
Q Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~ 322 (901)
.+ +..+. ...+++||||+++++++.+++.|...+ +.+..
T Consensus 179 ----------------------------~~----~~~l~--~~~~~~lVF~~s~~~a~~l~~~L~~~g-------~~~~~ 217 (451)
T 2jlq_A 179 ----------------------------TG----FDWIT--DYQGKTVWFVPSIKAGNDIANCLRKSG-------KRVIQ 217 (451)
T ss_dssp ----------------------------SS----CHHHH--HCCSCEEEECSSHHHHHHHHHHHHTTT-------CCEEE
T ss_pred ----------------------------HH----HHHHH--hCCCCEEEEcCCHHHHHHHHHHHHHcC-------CeEEE
Confidence 00 00111 135799999999999999999998763 34668
Q ss_pred ecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccc---ccccHhcHHHHh
Q 046397 323 CHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLP---SWISTVSAQQRR 399 (901)
Q Consensus 323 lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~---~~iSka~~~QR~ 399 (901)
+||.+ +.++++.|++|+.+|||||+++|+|||||+ ++|||+|+.+...|| ..+...+.. .|.|.++|.||+
T Consensus 218 lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~ 291 (451)
T 2jlq_A 218 LSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRR 291 (451)
T ss_dssp ECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHH
T ss_pred CCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhc
Confidence 99975 457899999999999999999999999999 999999999999998 556666665 899999999999
Q ss_pred hhcCCCC--CCceEEcCC
Q 046397 400 GRAGRVQ--PGECYRLYP 415 (901)
Q Consensus 400 GRAGR~~--~G~c~~L~s 415 (901)
|||||.+ +|.||.+++
T Consensus 292 GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 292 GRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp TTSSCCTTCCCEEEEECS
T ss_pred cccCCCCCCCccEEEEeC
Confidence 9999996 899998875
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=351.35 Aligned_cols=319 Identities=18% Similarity=0.255 Sum_probs=218.5
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
+.-.+.+.+|.++++.+.+++++++++|||||||+++++++++.+..... ..+++|++|+++|+.|+++++..... .
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~-~ 134 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLK--ATQALVLAPTRELAQQIQKVVMALGD-Y 134 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHGG-G
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCC--ceeEEEEeChHHHHHHHHHHHHHHhc-c
Confidence 34456889999999999999999999999999999999999987643322 34567777999999999999876542 2
Q ss_pred cCcEeeEEEec-------ccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC
Q 046397 85 LGESVGYKVRL-------EGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP 156 (901)
Q Consensus 85 ~g~~vGy~vr~-------e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~ 156 (901)
.+..++..+.. +......++|+|+||+.|++.+..+. .+.++++|||||||+. ...++...+...+....+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~~~~~~~~~ 213 (414)
T 3eiq_A 135 MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM-LSRGFKDQIYDIFQKLNS 213 (414)
T ss_dssp SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH-HHTTTHHHHHHHHTTSCT
T ss_pred cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh-hccCcHHHHHHHHHhCCC
Confidence 33333322211 11122567999999999999988765 6788999999999963 222233333333333457
Q ss_pred CceEEEeccCCCHHHH---HhhhCCCcEEeeCCccccc---eEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccch
Q 046397 157 ELRLVLMSATLDAELF---SSYFGGATVINIPGFTYPV---RTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPR 230 (901)
Q Consensus 157 ~~kiIlmSATl~~~~f---~~yf~~~~~i~i~gr~~pV---~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (901)
+.++|+||||++.+.. ..++.+...+.+.....+. ...|...
T Consensus 214 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 261 (414)
T 3eiq_A 214 NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINV-------------------------------- 261 (414)
T ss_dssp TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEEC--------------------------------
T ss_pred CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEe--------------------------------
Confidence 8999999999976543 4455554444433222111 1111100
Q ss_pred hhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCc
Q 046397 231 KRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANR 310 (901)
Q Consensus 231 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~ 310 (901)
...+.....+..+......+++|||++++++++.+++.|...+
T Consensus 262 -------------------------------------~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~ 304 (414)
T 3eiq_A 262 -------------------------------------EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD 304 (414)
T ss_dssp -------------------------------------SSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT
T ss_pred -------------------------------------ChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC
Confidence 0000111233444555667899999999999999999998764
Q ss_pred cCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccc
Q 046397 311 ILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWI 390 (901)
Q Consensus 311 ~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~i 390 (901)
+.+..+||+++.++|.++++.|++|..+|||||+++++|||+|++++||+ ||++.
T Consensus 305 -------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~--------~~~p~---------- 359 (414)
T 3eiq_A 305 -------FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------YDLPT---------- 359 (414)
T ss_dssp -------CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE--------SSCCS----------
T ss_pred -------CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE--------eCCCC----------
Confidence 33668999999999999999999999999999999999999999999999 65543
Q ss_pred cHhcHHHHhhhcCCC-CCCceEEcCCcchhhh
Q 046397 391 STVSAQQRRGRAGRV-QPGECYRLYPRCVYDA 421 (901)
Q Consensus 391 Ska~~~QR~GRAGR~-~~G~c~~L~s~~~~~~ 421 (901)
|..+|.||+|||||. ++|.||.+|++.....
T Consensus 360 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp STHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred CHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 556777999999999 5899999999876543
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7e-36 Score=338.35 Aligned_cols=320 Identities=20% Similarity=0.213 Sum_probs=228.9
Q ss_pred CCcHHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 8 LPAYKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
-..+++|.++++.+.++ +++++++|||||||+++..++++.+..... ..+++++.|+++|+.|+++++.+.. ...
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~-~~~ 102 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDA--SPQAICLAPSRELARQTLEVVQEMG-KFT 102 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCC--SCCEEEECSSHHHHHHHHHHHHHHT-TTS
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCC--CccEEEECCCHHHHHHHHHHHHHHh-ccc
Confidence 34678999999999988 899999999999999999999987643322 3456777799999999999886653 222
Q ss_pred CcEeeEEE--ecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEE
Q 046397 86 GESVGYKV--RLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVL 162 (901)
Q Consensus 86 g~~vGy~v--r~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIl 162 (901)
+..++... ..........+|+|+||+.|++.+.... .+.++++|||||||+......+...+.+......++.++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~ 182 (395)
T 3pey_A 103 KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVL 182 (395)
T ss_dssp CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEE
T ss_pred CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEE
Confidence 22222222 1222233468999999999999887665 68899999999999743323333333333333446789999
Q ss_pred eccCCCHH--H-HHhhhCCCcEEeeCCccccc---eEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhh
Q 046397 163 MSATLDAE--L-FSSYFGGATVINIPGFTYPV---RTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQI 236 (901)
Q Consensus 163 mSATl~~~--~-f~~yf~~~~~i~i~gr~~pV---~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (901)
||||++.. . ...++.+...+.+.....+. ...+...
T Consensus 183 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 224 (395)
T 3pey_A 183 FSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC-------------------------------------- 224 (395)
T ss_dssp EESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC--------------------------------------
T ss_pred EEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEc--------------------------------------
Confidence 99999764 2 23444444444433222111 1111000
Q ss_pred HHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCC
Q 046397 237 ASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPT 316 (901)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~ 316 (901)
.........+..+......+++||||+++++++.+++.|...+.
T Consensus 225 -------------------------------~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~----- 268 (395)
T 3pey_A 225 -------------------------------KNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH----- 268 (395)
T ss_dssp -------------------------------SSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC-----
T ss_pred -------------------------------CchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCC-----
Confidence 00000111233444445678999999999999999999987643
Q ss_pred ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHH
Q 046397 317 RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 317 ~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 396 (901)
.+..+||+++.++|.++++.|++|+.+|||||+++++|||+|++++||+ ||.+. +...+.|..+|.
T Consensus 269 --~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~----~~~~~~s~~~~~ 334 (395)
T 3pey_A 269 --EVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YDLPT----LANGQADPATYI 334 (395)
T ss_dssp --CCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE--------SSCCB----CTTSSBCHHHHH
T ss_pred --cEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE--------cCCCC----CCcCCCCHHHhh
Confidence 3668999999999999999999999999999999999999999999999 54433 233467899999
Q ss_pred HHhhhcCCC-CCCceEEcCCcch
Q 046397 397 QRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 397 QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
||+|||||. ++|.|+.+++...
T Consensus 335 Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 335 HRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp HHHTTSSCTTCCEEEEEEECSHH
T ss_pred HhccccccCCCCceEEEEEechH
Confidence 999999999 5699999988643
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.8e-36 Score=340.91 Aligned_cols=320 Identities=15% Similarity=0.172 Sum_probs=228.6
Q ss_pred CcHHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 9 PAYKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
..+++|.++++.+.++ +++++++|||||||+++.+++++.+..... ..+++++.|+++|+.|+++++.+......+
T Consensus 47 ~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 47 RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--YPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC--CCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 4578899999999987 999999999999999999999987644332 335667779999999999988776544334
Q ss_pred cEeeEEEecccc---cCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 87 ESVGYKVRLEGM---KGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 87 ~~vGy~vr~e~~---~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
..+++....... .....+|+|+||+.|++.+.... .+.++++|||||||.......+...+........++.++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i 204 (412)
T 3fht_A 125 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 204 (412)
T ss_dssp CCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEE
T ss_pred ceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEE
Confidence 455555433322 22357899999999999886644 5688999999999963221222222222222245678999
Q ss_pred EeccCCCHH---HHHhhhCCCcEEeeCCccc---cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhh
Q 046397 162 LMSATLDAE---LFSSYFGGATVINIPGFTY---PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQ 235 (901)
Q Consensus 162 lmSATl~~~---~f~~yf~~~~~i~i~gr~~---pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (901)
+||||++.. ....++.+...+.+..... .+...+...
T Consensus 205 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 247 (412)
T 3fht_A 205 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLC------------------------------------- 247 (412)
T ss_dssp EEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEEC-------------------------------------
T ss_pred EEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEc-------------------------------------
Confidence 999999775 3334555544444432211 111111100
Q ss_pred hHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC
Q 046397 236 IASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP 315 (901)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 315 (901)
...+.....+..+......+++||||+++++++.+++.|...+.
T Consensus 248 --------------------------------~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~---- 291 (412)
T 3fht_A 248 --------------------------------SSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH---- 291 (412)
T ss_dssp --------------------------------SSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTC----
T ss_pred --------------------------------CChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCC----
Confidence 00000111233334445678999999999999999999987643
Q ss_pred CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcH
Q 046397 316 TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSA 395 (901)
Q Consensus 316 ~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~ 395 (901)
.+..+||+|+..+|.++++.|++|..+|||||+++++|||+|++++||+.+.+. +.. .+.|.++|
T Consensus 292 ---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~--------~~~----~~~s~~~~ 356 (412)
T 3fht_A 292 ---QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPV--------DKD----GNPDNETY 356 (412)
T ss_dssp ---CCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCB--------CSS----SSBCHHHH
T ss_pred ---eEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCC--------CCC----CCcchhee
Confidence 366899999999999999999999999999999999999999999999955443 221 13577899
Q ss_pred HHHhhhcCCC-CCCceEEcCCcch
Q 046397 396 QQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 396 ~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
.||+|||||. .+|.|+.+++...
T Consensus 357 ~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 357 LHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp HHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ecccCcccCCCCCceEEEEEcChh
Confidence 9999999998 5699999998654
No 13
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.8e-36 Score=392.90 Aligned_cols=438 Identities=15% Similarity=0.144 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 11 YKEKNRLLTAIS-QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 11 ~~~q~~il~~i~-~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+.|.++++.+. .+++++|++|||||||+++.++|++.+.+.. ..++++++|+|+||.|+++.+.+.++..+|..|
T Consensus 928 npiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V 1004 (1724)
T 4f92_B 928 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---EGRCVYITPMEALAEQVYMDWYEKFQDRLNKKV 1004 (1724)
T ss_dssp CHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---TCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCE
T ss_pred CHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---CCEEEEEcChHHHHHHHHHHHHHHhchhcCCEE
Confidence 467999999985 5678999999999999999999998876533 236788889999999999999998888777777
Q ss_pred eEEEec---ccccCCCceEEEEcHHHHHHHHhcC---CCCCCceEEEEecCcc----cCcchhHHHHHHHHHHhh-CCCc
Q 046397 90 GYKVRL---EGMKGRDTRLLFCTTGILLRRLLVD---RNLKGVTHVIVDEVHE----RGMNEDFLLIVLKDLLSR-RPEL 158 (901)
Q Consensus 90 Gy~vr~---e~~~~~~t~Ii~~T~g~Llr~L~~~---~~l~~~~~IIIDE~He----R~~~~d~ll~~lk~ll~~-~~~~ 158 (901)
+.-... +.....+++|+|||||.+...+.+. ..+.++++||+||+|. |+...+.++..++.+... .+++
T Consensus 1005 ~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ 1084 (1724)
T 4f92_B 1005 VLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPI 1084 (1724)
T ss_dssp EECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCC
T ss_pred EEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCc
Confidence 643211 1111135789999999986655432 2578899999999993 443344444555554443 4678
Q ss_pred eEEEeccCC-CHHHHHhhhCC--CcEEeeCCcccc--ceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhh
Q 046397 159 RLVLMSATL-DAELFSSYFGG--ATVINIPGFTYP--VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRK 233 (901)
Q Consensus 159 kiIlmSATl-~~~~f~~yf~~--~~~i~i~gr~~p--V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (901)
|+|+||||+ |++.+++|++. ..+..+.....| ++.+... +... .. ...
T Consensus 1085 riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~-------~~~~------~~-~~~------------- 1137 (1724)
T 4f92_B 1085 RIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQG-------FNIS------HT-QTR------------- 1137 (1724)
T ss_dssp EEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEE-------ECCC------SH-HHH-------------
T ss_pred eEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEe-------ccCC------Cc-hhh-------------
Confidence 999999999 88999999984 334444433333 3333211 0000 00 000
Q ss_pred hhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccC-
Q 046397 234 SQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRIL- 312 (901)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~- 312 (901)
.. .+...+...+......+++||||+++..++.++..|......
T Consensus 1138 ------~~-----------------------------~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~ 1182 (1724)
T 4f92_B 1138 ------LL-----------------------------SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAAD 1182 (1724)
T ss_dssp ------HH-----------------------------TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ------hh-----------------------------hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhc
Confidence 00 000001122233456789999999999999988777532100
Q ss_pred ---------------------CC-----CCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEE
Q 046397 313 ---------------------GD-----PTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVI 366 (901)
Q Consensus 313 ---------------------~~-----~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VI 366 (901)
.+ ....+|..|||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||
T Consensus 1183 ~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI 1262 (1724)
T 4f92_B 1183 IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII 1262 (1724)
T ss_dssp TCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEE
T ss_pred cchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEE
Confidence 00 0123588999999999999999999999999999999999999999999999
Q ss_pred eCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcchh---hhcccCCCCcccccCccch--
Q 046397 367 DCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCVY---DAFAEYQLPEILRTPLQSL-- 438 (901)
Q Consensus 367 d~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~~---~~l~~~~~PEi~r~~L~~~-- 438 (901)
.+. ..||.... ...+.|..+|.||+|||||.+ .|.|+.++..... ..+.. .|+..++.|+..
T Consensus 1263 ~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~--~~~pveS~L~~~l~ 1332 (1724)
T 4f92_B 1263 MDT----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY--EPLPVESHLDHCMH 1332 (1724)
T ss_dssp ECS----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT--SCBCCCCCGGGSCH
T ss_pred ecC----ccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC--CCCceeeecccchH
Confidence 632 23655432 124678899999999999985 7999999876543 33332 344455555432
Q ss_pred --hhhhhccC-CC---CHHHHhhhhc------C----------------CChHHHHHHHHHHHHHcCCcc--CCC--ccc
Q 046397 439 --CLQIKSLR-LG---TIAGFLSRAL------Q----------------SPELLAVQNAIEYLKIIGALD--HNE--ELT 486 (901)
Q Consensus 439 --~L~~k~l~-~~---~~~~fl~~~l------~----------------pP~~~~v~~al~~L~~~gald--~~~--~lT 486 (901)
++.....+ +. ++.+|+...+ . ..-.+.++.+++.|.+.|+|. +++ ..|
T Consensus 1333 ~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T 1412 (1724)
T 4f92_B 1333 DHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL 1412 (1724)
T ss_dssp HHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeec
Confidence 22211222 22 3344442211 1 112345788999999999995 344 469
Q ss_pred hhhhhhhcCCCChHHHHHHHHhhhcCC-hHHHHHHHHh
Q 046397 487 VLGQYLAMLPMEPKLGKMLILGAIFNC-LEPVLTIVAG 523 (901)
Q Consensus 487 ~lG~~la~lpl~p~~~k~ll~~~~~~c-l~~~l~iaa~ 523 (901)
++|++++.++++|..++++..+..-++ +..+|.+.|.
T Consensus 1413 ~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~ 1450 (1724)
T 4f92_B 1413 NLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISN 1450 (1724)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcC
Confidence 999999999999999999988766555 4566666654
No 14
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.6e-35 Score=383.82 Aligned_cols=451 Identities=18% Similarity=0.168 Sum_probs=297.2
Q ss_pred cHHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC------CCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 10 AYKEKNRLLTAIS-QNQVVIISGETGCGKTTQVPQFILESEITSVR------GAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 10 i~~~q~~il~~i~-~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~------~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
....|.++++.+. ++++++|++|||||||+.+.+++++.+.+... ....+++++.|+|+||.|+.+.+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 3467999998764 68899999999999999999999988764321 2356889999999999999999987764
Q ss_pred CccCcEeeEEEe---cccccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCc----ccCcchhHHHHHHHHHH
Q 046397 83 EKLGESVGYKVR---LEGMKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVH----ERGMNEDFLLIVLKDLL 152 (901)
Q Consensus 83 ~~~g~~vGy~vr---~e~~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~H----eR~~~~d~ll~~lk~ll 152 (901)
. +|..|+--.. ........++|+||||+.+..++.+.. .++++++|||||+| +||...+.++..+....
T Consensus 160 ~-~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 T-YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp T-TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred h-CCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHH
Confidence 3 3434432111 111111358999999999865544332 47899999999999 56555555444433333
Q ss_pred -hhCCCceEEEeccCC-CHHHHHhhhCCCc---EEeeCC--ccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhh
Q 046397 153 -SRRPELRLVLMSATL-DAELFSSYFGGAT---VINIPG--FTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMS 225 (901)
Q Consensus 153 -~~~~~~kiIlmSATl-~~~~f~~yf~~~~---~i~i~g--r~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (901)
...+++|+|+||||+ |.+.+++|++..+ ...+.. |..|++.++... ...
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~---------~~~--------------- 294 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGI---------TEK--------------- 294 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEE---------CCC---------------
T ss_pred HhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEecc---------CCc---------------
Confidence 346789999999998 8899999998642 333433 333444444311 000
Q ss_pred cccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHH
Q 046397 226 KQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDK 305 (901)
Q Consensus 226 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 305 (901)
. .......+.+. +...+.+....+++||||+++.+++.+++.
T Consensus 295 -----~-~~~~~~~~~~~--------------------------------~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~ 336 (1724)
T 4f92_B 295 -----K-AIKRFQIMNEI--------------------------------VYEKIMEHAGKNQVLVFVHSRKETGKTARA 336 (1724)
T ss_dssp -----C-HHHHHHHHHHH--------------------------------HHHHHTTCCSSCCEEEECSSTTTTHHHHHH
T ss_pred -----c-hhhhhHHHHHH--------------------------------HHHHHHHHhcCCcEEEECCCHHHHHHHHHH
Confidence 0 00000001110 111222334567999999999999998888
Q ss_pred HHhCccCC------------------------------CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhc
Q 046397 306 LQANRILG------------------------------DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAET 355 (901)
Q Consensus 306 L~~~~~~~------------------------------~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaet 355 (901)
|.+..... .....+|..|||+|+.++|..+++.|++|.++|||||++++.
T Consensus 337 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~ 416 (1724)
T 4f92_B 337 IRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAW 416 (1724)
T ss_dssp HHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHH
T ss_pred HHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHh
Confidence 76421000 001235889999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcch---hhhcccCCCCc
Q 046397 356 SITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCV---YDAFAEYQLPE 429 (901)
Q Consensus 356 GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~---~~~l~~~~~PE 429 (901)
|||+|++++||.. ...||+..+. ..++|.++|.||+|||||.+ .|.++.+.++.. |..+...+.|
T Consensus 417 GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~p- 487 (1724)
T 4f92_B 417 GVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP- 487 (1724)
T ss_dssp HSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSC-
T ss_pred hCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCc-
Confidence 9999999999962 2347776543 24679999999999999985 799999877653 3333333332
Q ss_pred cccc----CccchhhhhhccC-CC---CHHHHhhhh------cCCC-------------------hHHHHHHHHHHHHHc
Q 046397 430 ILRT----PLQSLCLQIKSLR-LG---TIAGFLSRA------LQSP-------------------ELLAVQNAIEYLKII 476 (901)
Q Consensus 430 i~r~----~L~~~~L~~k~l~-~~---~~~~fl~~~------l~pP-------------------~~~~v~~al~~L~~~ 476 (901)
..+ .+.+.+++.-.+| +. +..+||... ...| ..+.+..++..|.+.
T Consensus 488 -ieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~ 566 (1724)
T 4f92_B 488 -IESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKN 566 (1724)
T ss_dssp -CCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred -chhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHC
Confidence 122 2222222211222 22 233333221 1111 123578899999999
Q ss_pred CCccCC---C--ccchhhhhhhcCCCChHHHHHHHHhhhcCCh-HHHHHHHHhhc-CCCCccCC
Q 046397 477 GALDHN---E--ELTVLGQYLAMLPMEPKLGKMLILGAIFNCL-EPVLTIVAGLS-VRDPFLAP 533 (901)
Q Consensus 477 gald~~---~--~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl-~~~l~iaa~ls-~~~~f~~p 533 (901)
|.|..+ + ..|++|+.+|+++++|...+.+.....-.+. .++|.+.|..+ ++++.+..
T Consensus 567 ~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~ 630 (1724)
T 4f92_B 567 NLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVRE 630 (1724)
T ss_dssp TSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCG
T ss_pred CCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCH
Confidence 999532 2 5899999999999999999999877655554 45676666443 23444433
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-34 Score=334.42 Aligned_cols=309 Identities=19% Similarity=0.255 Sum_probs=220.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC---CCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR---GAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~---~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+++|.++++.+.+++++++++|||||||+++..++++.+..... .....++|+.|+|+||.|+++++.+.... .+
T Consensus 79 pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~-~~ 157 (434)
T 2db3_A 79 PTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE-SY 157 (434)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTT-SS
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhcc-CC
Confidence 578899999999999999999999999999999999988775432 12346777779999999999988765432 22
Q ss_pred cEeeEEEecc------cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh---CC
Q 046397 87 ESVGYKVRLE------GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR---RP 156 (901)
Q Consensus 87 ~~vGy~vr~e------~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~---~~ 156 (901)
..++.-.... ......++|+|+|||.|++.+.... .+.++++||+||||.. .+..+. ..++.++.. .+
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~-~~~gf~-~~~~~i~~~~~~~~ 235 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM-LDMGFS-EDMRRIMTHVTMRP 235 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHH-TSTTTH-HHHHHHHHCTTSCS
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhh-hccCcH-HHHHHHHHhcCCCC
Confidence 2222111110 1113468999999999999887655 6899999999999952 333332 334444443 56
Q ss_pred CceEEEeccCCCHH---HHHhhhCCCcEEeeCCc---cccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccch
Q 046397 157 ELRLVLMSATLDAE---LFSSYFGGATVINIPGF---TYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPR 230 (901)
Q Consensus 157 ~~kiIlmSATl~~~---~f~~yf~~~~~i~i~gr---~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (901)
+.++++||||++.+ ....|+.+...+.+... ...+...+..- .
T Consensus 236 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~---------------~---------------- 284 (434)
T 2db3_A 236 EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV---------------N---------------- 284 (434)
T ss_dssp SCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEEC---------------C----------------
T ss_pred CceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEe---------------C----------------
Confidence 78999999999765 23345554433333311 11111111100 0
Q ss_pred hhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCc
Q 046397 231 KRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANR 310 (901)
Q Consensus 231 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~ 310 (901)
..+....++ .+.... .+++||||+++.+++.+++.|...+
T Consensus 285 --------------------------------------~~~k~~~l~-~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~~ 324 (434)
T 2db3_A 285 --------------------------------------KYAKRSKLI-EILSEQ-ADGTIVFVETKRGADFLASFLSEKE 324 (434)
T ss_dssp --------------------------------------GGGHHHHHH-HHHHHC-CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred --------------------------------------cHHHHHHHH-HHHHhC-CCCEEEEEeCcHHHHHHHHHHHhCC
Confidence 000011111 222222 2349999999999999999998764
Q ss_pred cCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccc
Q 046397 311 ILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWI 390 (901)
Q Consensus 311 ~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~i 390 (901)
+.+..+||+++..+|..+++.|++|+.+|||||+++++|||+|+|++||+ ||.+.
T Consensus 325 -------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d~p~---------- 379 (434)
T 2db3_A 325 -------FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YDMPS---------- 379 (434)
T ss_dssp -------CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SSCCS----------
T ss_pred -------CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------ECCCC----------
Confidence 33778999999999999999999999999999999999999999999999 76654
Q ss_pred cHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 391 STVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 391 Ska~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|..+|.||+||+||. +.|.|+.+|+..
T Consensus 380 ~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 380 KIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp SHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred CHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 455777999999999 689999999843
No 16
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.7e-35 Score=361.46 Aligned_cols=412 Identities=17% Similarity=0.202 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
...+++|.++++.+.+++++||++|||||||+++.+++++.+.....+...+++|+.|+++|+.|+++.+.+.... .+.
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~-~~~ 90 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER-HGY 90 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT-TTC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc-CCc
Confidence 3468899999999999999999999999999999999998776544333356788889999999999988776531 222
Q ss_pred EeeEEEeccccc------CCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-----
Q 046397 88 SVGYKVRLEGMK------GRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR----- 154 (901)
Q Consensus 88 ~vGy~vr~e~~~------~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~----- 154 (901)
.++.-....... ...++|+|+|||+|++.+..+. .+.++++|||||||+..-...+ ..++...+..
T Consensus 91 ~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~-~~i~~~~l~~~~~~~ 169 (696)
T 2ykg_A 91 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY-NMIMFNYLDQKLGGS 169 (696)
T ss_dssp CEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH-HHHHHHHHHHHHTTC
T ss_pred eEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH-HHHHHHHHHHhhccc
Confidence 232211111110 1357999999999999988764 4788999999999985534333 2233322222
Q ss_pred -CCCceEEEeccCCC-------HHHHHhhhC-----CCcEEeeCCcc---------ccceEEe-------------c---
Q 046397 155 -RPELRLVLMSATLD-------AELFSSYFG-----GATVINIPGFT---------YPVRTHF-------------L--- 196 (901)
Q Consensus 155 -~~~~kiIlmSATl~-------~~~f~~yf~-----~~~~i~i~gr~---------~pV~~~~-------------l--- 196 (901)
.+..++|+||||+. .+.+..++. +...+...... .|...+. +
T Consensus 170 ~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l 249 (696)
T 2ykg_A 170 SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 249 (696)
T ss_dssp CSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHH
Confidence 36789999999997 333322221 12222211100 0100000 0
Q ss_pred -cchhhhcccccCCC-----CCCcchhhHH--Hh--Hhhcc-----cchh-hhh--------------------------
Q 046397 197 -EDILDMTGYRLTPY-----NQIDDYGQEK--MW--KMSKQ-----APRK-RKS-------------------------- 234 (901)
Q Consensus 197 -~d~~~~~~~~~~~~-----~~~~~~~~~~--~~--~~~~~-----~~~~-~~~-------------------------- 234 (901)
+++........... ....+++... .| ...+. .+.+ ...
T Consensus 250 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~ 329 (696)
T 2ykg_A 250 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 329 (696)
T ss_dssp HHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchh
Confidence 00000000000000 0000000000 00 00000 0000 000
Q ss_pred ---hhHHHHHHHHHhhcccccchhhhhhc-------------c-cCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHH
Q 046397 235 ---QIASAVEDTLKAANFNEYSSQTRESL-------------S-CWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWD 297 (901)
Q Consensus 235 ---~~~~~i~~~l~~~~~~~~~~~~~~~l-------------~-~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ 297 (901)
.....+.................... . ...........+..++........++++|||++++.
T Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~ 409 (696)
T 2ykg_A 330 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 409 (696)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHH
Confidence 00000000000000000000000000 0 000011122333344444333346789999999999
Q ss_pred HHHHHHHHHHhCccCCCCCceEEEEe--------cCCCCHHHHHhhcCCCCC-CCeEEEEecchhhcccCCCCeEEEEeC
Q 046397 298 DINSLNDKLQANRILGDPTRVLLLTC--------HGSMASSEQRLIFDEPES-GVRKIVLATNIAETSITINDVVFVIDC 368 (901)
Q Consensus 298 ~i~~l~~~L~~~~~~~~~~~~~v~~l--------hs~l~~~eq~~i~~~f~~-g~~kIIvaTniaetGIdIp~V~~VId~ 368 (901)
+++.+++.|...+.+.. +.+..+ ||+|+.++|.++++.|++ |.++|||||+++++|||+|+|++||+
T Consensus 410 ~~~~l~~~L~~~~~~~~---~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~- 485 (696)
T 2ykg_A 410 LVDALKNWIEGNPKLSF---LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL- 485 (696)
T ss_dssp HHHHHHHHHHHCTTCCS---CCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE-
T ss_pred HHHHHHHHHHhCCCccc---cceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE-
Confidence 99999999998753221 223444 779999999999999998 99999999999999999999999999
Q ss_pred CCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchh----------hhcccCCCCcccccCccch
Q 046397 369 GKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVY----------DAFAEYQLPEILRTPLQSL 438 (901)
Q Consensus 369 G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~----------~~l~~~~~PEi~r~~L~~~ 438 (901)
||++.+...|+ ||+|| ||.++|.||.|+++... +.+.+...||+.+.+++.+
T Consensus 486 -------~d~p~s~~~~~----------Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 547 (696)
T 2ykg_A 486 -------YEYVGNVIKMI----------QTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 547 (696)
T ss_dssp -------ESCC--CCCC--------------------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred -------eCCCCCHHHHH----------Hhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Confidence 88887766665 99999 99999999999998766 2333444455555555544
Q ss_pred hhhhh
Q 046397 439 CLQIK 443 (901)
Q Consensus 439 ~L~~k 443 (901)
+.+++
T Consensus 548 ~~~i~ 552 (696)
T 2ykg_A 548 REKIL 552 (696)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 17
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.6e-35 Score=370.55 Aligned_cols=386 Identities=17% Similarity=0.140 Sum_probs=240.6
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
++...+|.++++.+.++++++++||||||||+++..++.... . .+ .+++|++|+++|+.|+++++.+.++ +.
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~-~--~g--~~vlvl~PtraLa~Q~~~~l~~~~~---~~ 109 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH-R--NM--TKTIYTSPIKALSNQKFRDFKETFD---DV 109 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH-H--TT--CEEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH-h--cC--CeEEEEeCCHHHHHHHHHHHHHHcC---CC
Confidence 457899999999999999999999999999987666665543 2 22 3677788999999999999987653 22
Q ss_pred EeeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 88 SVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 88 ~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
.+|.-. .+......++|+|+||++|++++.... .+.++++|||||+|. -.+.++...+...+....++.++|+||||
T Consensus 110 ~v~~l~-G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~-l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 110 NIGLIT-GDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHY-VNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp CEEEEC-SSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTC-CCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred eEEEEe-CCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccc-ccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 333221 222334568999999999999887665 678999999999994 22222221122222334568999999999
Q ss_pred C-CHHHHHhhhC-----CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcc-------------
Q 046397 167 L-DAELFSSYFG-----GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQ------------- 227 (901)
Q Consensus 167 l-~~~~f~~yf~-----~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 227 (901)
+ +...|.+|++ .+.++..+++..|+..++..... .... .....................
T Consensus 188 ~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (997)
T 4a4z_A 188 VPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKE-LIPV-INQNSEFLEANFRKHKEILNGESAKGAPSKTDNG 265 (997)
T ss_dssp CTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTE-EEEE-ECTTCCBCHHHHHHHHHHHC--------------
T ss_pred CCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCc-chhc-ccchhhhhHHHHHHHHHHhhcccccccccccccc
Confidence 8 7889999996 45577888899998876543110 0000 000000000000000000000
Q ss_pred --------cch---hhhhhh-HHHHHHHH-HhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcC
Q 046397 228 --------APR---KRKSQI-ASAVEDTL-KAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMT 294 (901)
Q Consensus 228 --------~~~---~~~~~~-~~~i~~~l-~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~ 294 (901)
... .+.... ...-.... ..................+.........+..++..+. ....+++|||++
T Consensus 266 ~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~~~~~~IVF~~ 344 (997)
T 4a4z_A 266 RGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLR-KRELLPMVVFVF 344 (997)
T ss_dssp ---------------------------------------------------CCCCTTHHHHHHHHHH-HTTCCSEEEECS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHH-hCCCCCEEEEEC
Confidence 000 000000 00000000 0000000000000000000011122234445554443 446789999999
Q ss_pred CHHHHHHHHHHHHhCccCCC--------------------------------CCceEEEEecCCCCHHHHHhhcCCCCCC
Q 046397 295 GWDDINSLNDKLQANRILGD--------------------------------PTRVLLLTCHGSMASSEQRLIFDEPESG 342 (901)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~~--------------------------------~~~~~v~~lhs~l~~~eq~~i~~~f~~g 342 (901)
++.+++.++..|...++... .....|.++||+|++.+|..+++.|+.|
T Consensus 345 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G 424 (997)
T 4a4z_A 345 SKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG 424 (997)
T ss_dssp CHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCC
Confidence 99999999999976433210 0011478999999999999999999999
Q ss_pred CeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCc
Q 046397 343 VRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPR 416 (901)
Q Consensus 343 ~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~ 416 (901)
.++|||||+++++|||+|+ +.||..+.++ ||... ..|+|.++|.||+|||||.+ +|.||.++..
T Consensus 425 ~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 425 FIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp CCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred CCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEEecCC
Confidence 9999999999999999999 5555556665 55432 34789999999999999985 8999999853
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.4e-34 Score=329.27 Aligned_cols=311 Identities=18% Similarity=0.170 Sum_probs=224.5
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+++|.++++.+.+++++++.+|||||||+++..++++.+.... ...+++++.|+++|+.|+++++..... ..+..+
T Consensus 44 ~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~ 120 (400)
T 1s2m_A 44 PSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL--NKIQALIMVPTRELALQTSQVVRTLGK-HCGISC 120 (400)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc--CCccEEEEcCCHHHHHHHHHHHHHHhc-ccCceE
Confidence 68899999999999999999999999999999999987764322 233566667999999999998876543 233333
Q ss_pred eEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEE
Q 046397 90 GYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLV 161 (901)
Q Consensus 90 Gy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiI 161 (901)
+....... .....++|+|+||+.|++.+.... .+.++++|||||+|. +...-+...+..++... +..+++
T Consensus 121 ~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~--~~~~~~~~~~~~i~~~~~~~~~~i 198 (400)
T 1s2m_A 121 MVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK--MLSRDFKTIIEQILSFLPPTHQSL 198 (400)
T ss_dssp EEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH--HSSHHHHHHHHHHHTTSCSSCEEE
T ss_pred EEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH--hhhhchHHHHHHHHHhCCcCceEE
Confidence 32221111 123467999999999998887654 688999999999995 22233444555555544 578999
Q ss_pred EeccCCCHH---HHHhhhCCCcEEeeCCccc--cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhh
Q 046397 162 LMSATLDAE---LFSSYFGGATVINIPGFTY--PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQI 236 (901)
Q Consensus 162 lmSATl~~~---~f~~yf~~~~~i~i~gr~~--pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (901)
+||||++.. .+..++.....+.+..... .+..++...
T Consensus 199 ~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 240 (400)
T 1s2m_A 199 LFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFV-------------------------------------- 240 (400)
T ss_dssp EEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEEC--------------------------------------
T ss_pred EEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEe--------------------------------------
Confidence 999999764 2334444332222221110 011111000
Q ss_pred HHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCC
Q 046397 237 ASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPT 316 (901)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~ 316 (901)
........+..+......+++||||+++++++.+++.|...+
T Consensus 241 --------------------------------~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------ 282 (400)
T 1s2m_A 241 --------------------------------EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG------ 282 (400)
T ss_dssp --------------------------------CGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT------
T ss_pred --------------------------------chhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC------
Confidence 000001122333344567899999999999999999998753
Q ss_pred ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHH
Q 046397 317 RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 317 ~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 396 (901)
+.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+ ||++. |..+|.
T Consensus 283 -~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~--------~~~p~----------s~~~~~ 343 (400)
T 1s2m_A 283 -YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FDFPK----------TAETYL 343 (400)
T ss_dssp -CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE--------SSCCS----------SHHHHH
T ss_pred -CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE--------eCCCC----------CHHHHH
Confidence 33678999999999999999999999999999999999999999999999 55543 566788
Q ss_pred HHhhhcCCC-CCCceEEcCCcchhh
Q 046397 397 QRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 397 QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
||+|||||. ++|.|+.+|+.....
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred HhcchhcCCCCCceEEEEeccchHH
Confidence 999999999 689999999987654
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=331.26 Aligned_cols=314 Identities=18% Similarity=0.187 Sum_probs=221.0
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCC----------------CeeEEEEecchHHHHHH
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRG----------------AVCSIICTQPRRISAMS 72 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~----------------~~~~IlvtqPrr~la~q 72 (901)
..+++|.++++.+.+++++++++|||||||+++..++++.+...+.+ ...+++++.|+|+||.|
T Consensus 37 ~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 116 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ 116 (417)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH
Confidence 46788999999999999999999999999999999998877654321 12457777799999999
Q ss_pred HHHHHHHHhCCccCcEeeEEEecc------cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHH
Q 046397 73 VSERVASERGEKLGESVGYKVRLE------GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLL 145 (901)
Q Consensus 73 va~rva~e~~~~~g~~vGy~vr~e------~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll 145 (901)
+++++.+.... .+..++.-.... .....+++|+|+||+.|++.+..+. .+.++++|||||||.- ...-+.
T Consensus 117 ~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~--~~~~~~ 193 (417)
T 2i4i_A 117 IYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRM--LDMGFE 193 (417)
T ss_dssp HHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHH--HHTTCH
T ss_pred HHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHh--hccCcH
Confidence 99998766432 222222111110 0112457999999999999887765 6889999999999952 111123
Q ss_pred HHHHHHHhh-----CCCceEEEeccCCCHH---HHHhhhCCCcEEeeCCccc---cceEEeccchhhhcccccCCCCCCc
Q 046397 146 IVLKDLLSR-----RPELRLVLMSATLDAE---LFSSYFGGATVINIPGFTY---PVRTHFLEDILDMTGYRLTPYNQID 214 (901)
Q Consensus 146 ~~lk~ll~~-----~~~~kiIlmSATl~~~---~f~~yf~~~~~i~i~gr~~---pV~~~~l~d~~~~~~~~~~~~~~~~ 214 (901)
..++.++.. ....++++||||++.+ .+..++.+...+.+..... .+...+... .
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------~ 258 (417)
T 2i4i_A 194 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWV---------------E 258 (417)
T ss_dssp HHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEEC---------------C
T ss_pred HHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEe---------------c
Confidence 334455442 1257899999999764 3334554433333321110 011111000 0
Q ss_pred chhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHh-hcCCCcEEEEc
Q 046397 215 DYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICE-KERPGAVLVFM 293 (901)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~-~~~~g~iLVFl 293 (901)
. .+.. ..+..+.. ....+++||||
T Consensus 259 ---------------~---------------------------------------~~~~-~~l~~~l~~~~~~~~~lVf~ 283 (417)
T 2i4i_A 259 ---------------E---------------------------------------SDKR-SFLLDLLNATGKDSLTLVFV 283 (417)
T ss_dssp ---------------G---------------------------------------GGHH-HHHHHHHHTCCTTCEEEEEC
T ss_pred ---------------c---------------------------------------HhHH-HHHHHHHHhcCCCCeEEEEE
Confidence 0 0000 11112222 23567899999
Q ss_pred CCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccc
Q 046397 294 TGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKE 373 (901)
Q Consensus 294 ~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~ 373 (901)
+++++++.+++.|...+ +.+..+||+++.++|.++++.|++|+.+|||||+++++|||+|++++||+
T Consensus 284 ~~~~~~~~l~~~L~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~------ 350 (417)
T 2i4i_A 284 ETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN------ 350 (417)
T ss_dssp SSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE------
T ss_pred CCHHHHHHHHHHHHHCC-------CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE------
Confidence 99999999999998763 34779999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 374 TSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 374 ~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
||++. |..+|.||+|||||. ++|.||.+|++....
T Consensus 351 --~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 351 --FDLPS----------DIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp --SSCCS----------SHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred --EcCCC----------CHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 66543 566778999999999 579999999987654
No 20
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.2e-36 Score=357.70 Aligned_cols=302 Identities=17% Similarity=0.218 Sum_probs=228.7
Q ss_pred hhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 4 FRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 4 ~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
.|+.+|++++ . ++.+.+++++++++|||||||+++.+++++.+... + .+++|++|||+||.|+++.+.
T Consensus 169 ~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~--~~vLvl~PtreLa~Qi~~~l~----- 236 (618)
T 2whx_A 169 ERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--R--LRTLILAPTRVVAAEMEEALR----- 236 (618)
T ss_dssp CCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--T--CCEEEEESSHHHHHHHHHHTT-----
T ss_pred cccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--C--CeEEEEcChHHHHHHHHHHhc-----
Confidence 3788999876 2 88999999999999999999999988888877542 2 356777799999999998773
Q ss_pred ccCcEeeEEEec-ccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEE
Q 046397 84 KLGESVGYKVRL-EGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVL 162 (901)
Q Consensus 84 ~~g~~vGy~vr~-e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIl 162 (901)
+..++|..+. +....+...+.++|.+.+.+.+..++.+.++++|||||||+++...+..+..+...+. +++.++|+
T Consensus 237 --~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~~~~q~il 313 (618)
T 2whx_A 237 --GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-MGEAAAIF 313 (618)
T ss_dssp --TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEE
T ss_pred --CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-ccCccEEE
Confidence 3456666543 3344567789999999999999988899999999999999976666656665655543 36899999
Q ss_pred eccCCCHHHHHhhhC-CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397 163 MSATLDAELFSSYFG-GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE 241 (901)
Q Consensus 163 mSATl~~~~f~~yf~-~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (901)
||||++.. ...++. +.+.+.+... +|. ..
T Consensus 314 ~SAT~~~~-~~~~~~~~~~~~~v~~~-~~~----------------------~~-------------------------- 343 (618)
T 2whx_A 314 MTATPPGS-TDPFPQSNSPIEDIERE-IPE----------------------RS-------------------------- 343 (618)
T ss_dssp ECSSCTTC-CCSSCCCSSCEEEEECC-CCS----------------------SC--------------------------
T ss_pred EECCCchh-hhhhhccCCceeeeccc-CCH----------------------HH--------------------------
Confidence 99999654 122222 1122221110 000 00
Q ss_pred HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEE
Q 046397 242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLL 321 (901)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~ 321 (901)
+ . . ++..+.+ ..+++||||+++++++.+++.|...+. .+.
T Consensus 344 ---------------------~--~----~----ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~-------~v~ 383 (618)
T 2whx_A 344 ---------------------W--N----T----GFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVI 383 (618)
T ss_dssp ---------------------C--S----S----SCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHTTC-------CEE
T ss_pred ---------------------H--H----H----HHHHHHh--CCCCEEEEECChhHHHHHHHHHHHcCC-------cEE
Confidence 0 0 0 0111111 367999999999999999999997632 377
Q ss_pred EecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccccc--ccCCCccccccccccHhcHHHHh
Q 046397 322 TCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSY--DALNNTSCLLPSWISTVSAQQRR 399 (901)
Q Consensus 322 ~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~y--d~~~~~~~l~~~~iSka~~~QR~ 399 (901)
.+||. +|.++++.|++|+.+|||||+++++||||| |++|||+|..+...+ +...++......|+|.++|.||+
T Consensus 384 ~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~ 458 (618)
T 2whx_A 384 QLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRR 458 (618)
T ss_dssp EECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHH
T ss_pred EEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhc
Confidence 89984 788899999999999999999999999997 999999999876655 33344555667789999999999
Q ss_pred hhcCCCC--CCceEEcCC
Q 046397 400 GRAGRVQ--PGECYRLYP 415 (901)
Q Consensus 400 GRAGR~~--~G~c~~L~s 415 (901)
|||||.+ +|.||.+++
T Consensus 459 GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 459 GRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp TTSSCCTTCCCEEEEECS
T ss_pred cccCCCCCCCCeEEEEcc
Confidence 9999994 899999997
No 21
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=361.09 Aligned_cols=397 Identities=19% Similarity=0.189 Sum_probs=251.7
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
...+.+|.++++.+.++++++|++|||||||+++..+++..+ . .+ .++++++|+++|+.|+++++.+.++ .
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l-~--~g--~rvL~l~PtkaLa~Q~~~~l~~~~~-~--- 155 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-K--NK--QRVIYTSPIKALSNQKYRELLAEFG-D--- 155 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH-H--TT--CEEEEEESSHHHHHHHHHHHHHHHS-C---
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh-c--cC--CeEEEECChHHHHHHHHHHHHHHhC-C---
Confidence 348999999999999999999999999999999877777654 2 22 3677788999999999999998887 3
Q ss_pred EeeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEecc
Q 046397 88 SVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSA 165 (901)
Q Consensus 88 ~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSA 165 (901)
+|.- ..+....++.+|+|+||++|.+++..+. .+.++++|||||+|.-. +.+. ...+..++. ..++.++|+|||
T Consensus 156 -vgll-tGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~-d~~r-g~~~e~il~~l~~~~~il~LSA 231 (1010)
T 2xgj_A 156 -VGLM-TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR-DKER-GVVWEETIILLPDKVRYVFLSA 231 (1010)
T ss_dssp -EEEE-CSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGG-CTTT-HHHHHHHHHHSCTTCEEEEEEC
T ss_pred -EEEE-eCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhc-ccch-hHHHHHHHHhcCCCCeEEEEcC
Confidence 3431 2233334568999999999999887654 68899999999999521 1110 111122222 346799999999
Q ss_pred CC-CHHHHHhhhC-----CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHH
Q 046397 166 TL-DAELFSSYFG-----GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASA 239 (901)
Q Consensus 166 Tl-~~~~f~~yf~-----~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (901)
|+ +...|.+|++ .+.++..+++..|++.++.....+...+......... ...+...... +...
T Consensus 232 Ti~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------l~~~ 300 (1010)
T 2xgj_A 232 TIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFR---EENFQKAMAS--------ISNQ 300 (1010)
T ss_dssp CCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBC---HHHHHHHHHT--------CC--
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccc---hHHHHHHHHH--------Hhhh
Confidence 99 6677888875 4567777888888887765421000000000000000 0000000000 0000
Q ss_pred HHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC----
Q 046397 240 VEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP---- 315 (901)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~---- 315 (901)
..+................ . -.....+...+..++..+.. ...+++|||++++.+++.+++.|...++....
T Consensus 301 ~~~~~~~~~~~g~~~~~~k-~--~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 376 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYK-G--GSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 376 (1010)
T ss_dssp -------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHH
T ss_pred hcccccccccccccccccc-c--ccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHH
Confidence 0000000000000000000 0 00000002233444444433 34569999999999999999998764332100
Q ss_pred ----------------------------CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEe
Q 046397 316 ----------------------------TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVID 367 (901)
Q Consensus 316 ----------------------------~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId 367 (901)
....|..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 377 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~ 456 (1010)
T 2xgj_A 377 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT 456 (1010)
T ss_dssp HHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEES
T ss_pred HHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEe
Confidence 0123789999999999999999999999999999999999999999999997
Q ss_pred CCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcc----hhhhcccCCCCcccccCcc---c
Q 046397 368 CGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRC----VYDAFAEYQLPEILRTPLQ---S 437 (901)
Q Consensus 368 ~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~----~~~~l~~~~~PEi~r~~L~---~ 437 (901)
. . ..||... ..|+|.++|.||+|||||.+ .|.||.+++.. ....+. ...++.++..+. .
T Consensus 457 ~-~---~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~-~~~~~~l~s~f~~~~~ 525 (1010)
T 2xgj_A 457 S-V---RKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV-KGQADRLDSAFHLGYN 525 (1010)
T ss_dssp C-S---EEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH-SCCCCCCCCCCCCCHH
T ss_pred C-C---cccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH-hCCCcccccccCCcHH
Confidence 3 2 2366432 24789999999999999996 59999999865 222332 244554555544 3
Q ss_pred hhhhhh
Q 046397 438 LCLQIK 443 (901)
Q Consensus 438 ~~L~~k 443 (901)
.+|.+.
T Consensus 526 ~ilnll 531 (1010)
T 2xgj_A 526 MILNLM 531 (1010)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=347.20 Aligned_cols=321 Identities=16% Similarity=0.197 Sum_probs=120.6
Q ss_pred cHHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 10 AYKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 10 i~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
.+++|.++++.+..+ ++++++||||||||+++.+++++.+..... ...++|+.|+|+||.|+++++.+......+.
T Consensus 115 p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 192 (479)
T 3fmp_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--YPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (479)
T ss_dssp CCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHHTTSTTC
T ss_pred CCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC--CCcEEEEeChHHHHHHHHHHHHHHHhhCCCc
Confidence 456699999999986 999999999999999999999887643322 2356777799999999999887765543344
Q ss_pred EeeEEEecccc---cCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEE
Q 046397 88 SVGYKVRLEGM---KGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLV 161 (901)
Q Consensus 88 ~vGy~vr~e~~---~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiI 161 (901)
.+++.+..... .....+|+|+||+.|++.+.+.. .+.++++|||||+|+..-...+.... ..+.. ..++.++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~-~~i~~~~~~~~~~i 271 (479)
T 3fmp_B 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQS-IRIQRMLPRNCQML 271 (479)
T ss_dssp CEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHH-HHHHTTSCTTSEEE
T ss_pred eEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHH-HHHHhhCCccceEE
Confidence 45544433222 22346899999999999987644 56899999999999632222333333 33333 34578999
Q ss_pred EeccCCCHHH--HH-hhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHH
Q 046397 162 LMSATLDAEL--FS-SYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIAS 238 (901)
Q Consensus 162 lmSATl~~~~--f~-~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (901)
+||||++.+. +. .++.++..+.+.........
T Consensus 272 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------------------------- 306 (479)
T 3fmp_B 272 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT--------------------------------------------- 306 (479)
T ss_dssp EEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------------------------
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCC---------------------------------------------
Confidence 9999997753 33 34444333433321110000
Q ss_pred HHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCce
Q 046397 239 AVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRV 318 (901)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 318 (901)
+........ ........+..++.....+++||||+++.+++.+++.|...+ +
T Consensus 307 -~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~-------~ 358 (479)
T 3fmp_B 307 -IKQYYVLCS--------------------SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG-------H 358 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ceEEEEEeC--------------------CHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC-------c
Confidence 000000000 000001123334444456799999999999999999998653 3
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHH
Q 046397 319 LLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQR 398 (901)
Q Consensus 319 ~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 398 (901)
.+..+||+++..+|..+++.|++|..+|||||+++++|||+|+|++||+ ||.+.+.. .|.|..+|.||
T Consensus 359 ~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~--------~d~p~~~~----~~~s~~~~~Qr 426 (479)
T 3fmp_B 359 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNPDNETYLHR 426 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE--------ecCCCCCc----cCCCHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999 55443221 13466788899
Q ss_pred hhhcCCC-CCCceEEcCCcch
Q 046397 399 RGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 399 ~GRAGR~-~~G~c~~L~s~~~ 418 (901)
+|||||. .+|.|+.+|+...
T Consensus 427 ~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 427 IGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ---------------------
T ss_pred hcccccCCCCceEEEEEcCcc
Confidence 9999998 5799999998654
No 23
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.3e-34 Score=330.75 Aligned_cols=312 Identities=18% Similarity=0.274 Sum_probs=222.4
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+++|.++++.+.+++++++++|||||||+++..++++.+..... ..+++++.|+|+|+.|+++++.... ...+..+
T Consensus 60 ~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~ 136 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR--ETQALILAPTRELAVQIQKGLLALG-DYMNVQC 136 (410)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccC--CceEEEEcCcHHHHHHHHHHHHHHh-ccCCeEE
Confidence 678999999999999999999999999999999999886532222 3456677799999999999886643 3333333
Q ss_pred eEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceEE
Q 046397 90 GYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRLV 161 (901)
Q Consensus 90 Gy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~kiI 161 (901)
+....... ......+|+|+||+.|++.+.... .+.++++|||||+|+. ....+. ..+..++.. .++.++|
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~-~~~~~i~~~~~~~~~~i 214 (410)
T 2j0s_A 137 HACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM-LNKGFK-EQIYDVYRYLPPATQVV 214 (410)
T ss_dssp EEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-TSTTTH-HHHHHHHTTSCTTCEEE
T ss_pred EEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHH-HhhhhH-HHHHHHHHhCccCceEE
Confidence 32221111 011346899999999999887654 6788999999999963 222322 334444443 3578999
Q ss_pred EeccCCCHHHH---HhhhCCCcEEeeCCccc---cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhh
Q 046397 162 LMSATLDAELF---SSYFGGATVINIPGFTY---PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQ 235 (901)
Q Consensus 162 lmSATl~~~~f---~~yf~~~~~i~i~gr~~---pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (901)
+||||++.+.. ..|+.++..+.+..... .+...|..- .
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--------------------------- 258 (410)
T 2j0s_A 215 LISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV---------E--------------------------- 258 (410)
T ss_dssp EEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEE---------S---------------------------
T ss_pred EEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEe---------C---------------------------
Confidence 99999977532 23444333332221111 011111000 0
Q ss_pred hHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC
Q 046397 236 IASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP 315 (901)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 315 (901)
..+.....+..+......+++||||+++++++.+++.|...+.
T Consensus 259 ---------------------------------~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~---- 301 (410)
T 2j0s_A 259 ---------------------------------REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF---- 301 (410)
T ss_dssp ---------------------------------STTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTC----
T ss_pred ---------------------------------cHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCC----
Confidence 0000111222333344567999999999999999999987643
Q ss_pred CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcH
Q 046397 316 TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSA 395 (901)
Q Consensus 316 ~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~ 395 (901)
.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+ ||++. |..+|
T Consensus 302 ---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--------~~~p~----------s~~~~ 360 (410)
T 2j0s_A 302 ---TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN--------YDLPN----------NRELY 360 (410)
T ss_dssp ---CCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SSCCS----------SHHHH
T ss_pred ---ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE--------ECCCC----------CHHHH
Confidence 3668999999999999999999999999999999999999999999999 66543 55678
Q ss_pred HHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 396 QQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 396 ~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
.||+|||||. ++|.|+.+++.....
T Consensus 361 ~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 361 IHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp HHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred HHhcccccCCCCceEEEEEecHHHHH
Confidence 8999999999 689999999887654
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-34 Score=320.39 Aligned_cols=310 Identities=22% Similarity=0.302 Sum_probs=223.4
Q ss_pred CcHHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 9 PAYKEKNRLLTAISQN-QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~-~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
..+++|.++++.+.++ +++++.+|||||||++++.++++.... +...+++++.|+++|+.|+++++.+..+.. +.
T Consensus 28 ~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIILTPTRELAIQVADEIESLKGNK-NL 103 (367)
T ss_dssp SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CC
T ss_pred CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---cCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-Cc
Confidence 4678999999998887 799999999999999999998876532 223456777799999999999998876542 11
Q ss_pred EeeEEEeccc-----ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceE
Q 046397 88 SVGYKVRLEG-----MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRL 160 (901)
Q Consensus 88 ~vGy~vr~e~-----~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~ki 160 (901)
.++....... ......+|+|+||+.|++.+.... .+.++++||+||+|+. ....+.. .+..++. ..++.++
T Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~-~~~~~~~~~~~~~~~ 181 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNMGFIK-DVEKILNACNKDKRI 181 (367)
T ss_dssp CEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTTTTHH-HHHHHHHTSCSSCEE
T ss_pred eEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhhchHH-HHHHHHHhCCCCceE
Confidence 1221111100 011257899999999999887665 5889999999999963 2222322 3333433 3467899
Q ss_pred EEeccCCCHH---HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhH
Q 046397 161 VLMSATLDAE---LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIA 237 (901)
Q Consensus 161 IlmSATl~~~---~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (901)
|+||||++.+ .+..|+++...+.... ...+...|....
T Consensus 182 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------------------------------- 222 (367)
T 1hv8_A 182 LLFSATMPREILNLAKKYMGDYSFIKAKI-NANIEQSYVEVN-------------------------------------- 222 (367)
T ss_dssp EEECSSCCHHHHHHHHHHCCSEEEEECCS-SSSSEEEEEECC--------------------------------------
T ss_pred EEEeeccCHHHHHHHHHHcCCCeEEEecC-CCCceEEEEEeC--------------------------------------
Confidence 9999999875 3345666544433321 112222221100
Q ss_pred HHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCc
Q 046397 238 SAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTR 317 (901)
Q Consensus 238 ~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~ 317 (901)
..+.+..+ ..+.. ...+++||||+++++++.+++.|...+
T Consensus 223 -------------------------------~~~~~~~l-~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~------- 262 (367)
T 1hv8_A 223 -------------------------------ENERFEAL-CRLLK-NKEFYGLVFCKTKRDTKELASMLRDIG------- 262 (367)
T ss_dssp -------------------------------GGGHHHHH-HHHHC-STTCCEEEECSSHHHHHHHHHHHHHTT-------
T ss_pred -------------------------------hHHHHHHH-HHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcC-------
Confidence 00001111 11222 456799999999999999999998763
Q ss_pred eEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHH
Q 046397 318 VLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQ 397 (901)
Q Consensus 318 ~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 397 (901)
+.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+ ||++ .|..++.|
T Consensus 263 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~~~----------~s~~~~~Q 324 (367)
T 1hv8_A 263 FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YHLP----------QNPESYMH 324 (367)
T ss_dssp CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SSCC----------SCHHHHHH
T ss_pred CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ecCC----------CCHHHhhh
Confidence 33678999999999999999999999999999999999999999999999 5443 36667889
Q ss_pred HhhhcCCC-CCCceEEcCCcchhhh
Q 046397 398 RRGRAGRV-QPGECYRLYPRCVYDA 421 (901)
Q Consensus 398 R~GRAGR~-~~G~c~~L~s~~~~~~ 421 (901)
|+|||||. ++|.|+.++++..+..
T Consensus 325 ~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 325 RIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp HSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred cccccccCCCccEEEEEEcHHHHHH
Confidence 99999999 5899999999876653
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.8e-34 Score=322.79 Aligned_cols=312 Identities=18% Similarity=0.167 Sum_probs=223.7
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+++|.++++.+.+++++++.+|||+|||+++..++++.+.... ...+++++.|+++|+.|+++++.+......+..+
T Consensus 31 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 108 (391)
T 1xti_A 31 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 108 (391)
T ss_dssp CCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCE
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC--CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 78899999999999999999999999999999999887653222 2335666779999999999998776543223333
Q ss_pred eEEEeccc-------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceE
Q 046397 90 GYKVRLEG-------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRL 160 (901)
Q Consensus 90 Gy~vr~e~-------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~ki 160 (901)
+.-..... .....++|+|+||+.|++.+.... .+.++++|||||||...-..++... +..++.. .++.++
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~-~~~~~~~~~~~~~~ 187 (391)
T 1xti_A 109 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD-VQEIFRMTPHEKQV 187 (391)
T ss_dssp EEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHH-HHHHHHTSCSSSEE
T ss_pred EEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHH-HHHHHhhCCCCceE
Confidence 32211110 011346899999999999887665 6889999999999974322343333 3444443 457899
Q ss_pred EEeccCCCHH---HHHhhhCCCcEEeeCCccc----cceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhh
Q 046397 161 VLMSATLDAE---LFSSYFGGATVINIPGFTY----PVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRK 233 (901)
Q Consensus 161 IlmSATl~~~---~f~~yf~~~~~i~i~gr~~----pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (901)
|+||||++.. .+..++..+..+.+..... .+..++... .
T Consensus 188 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~---- 233 (391)
T 1xti_A 188 MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL------------------------------K---- 233 (391)
T ss_dssp EEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEEC------------------------------C----
T ss_pred EEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEc------------------------------C----
Confidence 9999999653 3445555544443332110 111111100 0
Q ss_pred hhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCC
Q 046397 234 SQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILG 313 (901)
Q Consensus 234 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~ 313 (901)
.......+..+......+++|||++++++++.+++.|...+.
T Consensus 234 ------------------------------------~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-- 275 (391)
T 1xti_A 234 ------------------------------------DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF-- 275 (391)
T ss_dssp ------------------------------------GGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTC--
T ss_pred ------------------------------------chhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCC--
Confidence 000001122233344678999999999999999999987643
Q ss_pred CCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHh
Q 046397 314 DPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTV 393 (901)
Q Consensus 314 ~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 393 (901)
.+..+||+++.++|.++++.|++|..+|||||+++++|+|+|++++||+ ||++. |..
T Consensus 276 -----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~--------~~~p~----------s~~ 332 (391)
T 1xti_A 276 -----PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDMPE----------DSD 332 (391)
T ss_dssp -----CEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE--------SSCCS----------SHH
T ss_pred -----cEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE--------eCCCC----------CHH
Confidence 3678999999999999999999999999999999999999999999999 55543 566
Q ss_pred cHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 394 SAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 394 ~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
+|.||+|||||. ++|.|+.+++....
T Consensus 333 ~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 333 TYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp HHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred HHHHhcccccCCCCceEEEEEEcccch
Confidence 788999999998 68999999986543
No 26
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.6e-34 Score=342.08 Aligned_cols=314 Identities=18% Similarity=0.174 Sum_probs=214.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR 101 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 101 (901)
.++++++++||||||||+.+++.+.. .+ .+ ++++|+|+||.|+++++.+ +|..++..+|...........
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~----~~---~g--l~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFS----AK---SG--VYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH----SS---SE--EEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHh----cC---Ce--EEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCc
Confidence 46789999999999999966555543 22 22 4446999999999999855 455555444433332222223
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEeccCCCH-HHHHhhhCCC
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMSATLDA-ELFSSYFGGA 179 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmSATl~~-~~f~~yf~~~ 179 (901)
..+++++|++++. ....+++|||||+|++ .+.++...+...+.... ++++++++|||.+. ..+....+..
T Consensus 223 ~~~il~~T~e~~~-------l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~ 294 (677)
T 3rc3_A 223 QASHVSCTVEMCS-------VTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEE 294 (677)
T ss_dssp CCSEEEEEGGGCC-------SSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred ccceeEecHhHhh-------hcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCc
Confidence 4789999986442 4578899999999976 44444444444444444 57899999999532 2222222221
Q ss_pred cEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhh
Q 046397 180 TVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRES 259 (901)
Q Consensus 180 ~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 259 (901)
..+....+..|.. +.+..
T Consensus 295 ~~v~~~~r~~~l~--~~~~~------------------------------------------------------------ 312 (677)
T 3rc3_A 295 VEVRDYKRLTPIS--VLDHA------------------------------------------------------------ 312 (677)
T ss_dssp EEEEECCCSSCEE--ECSSC------------------------------------------------------------
T ss_pred eEEEEeeecchHH--HHHHH------------------------------------------------------------
Confidence 1111111110100 00000
Q ss_pred cccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCC
Q 046397 260 LSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEP 339 (901)
Q Consensus 260 l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f 339 (901)
+ . . ......| .+||++++++++.+++.|...+ +.+.++||+|++++|.++++.|
T Consensus 313 --------l--~-------~-l~~~~~g-~iIf~~s~~~ie~la~~L~~~g-------~~v~~lHG~L~~~~R~~~~~~F 366 (677)
T 3rc3_A 313 --------L--E-------S-LDNLRPG-DCIVCFSKNDIYSVSRQIEIRG-------LESAVIYGSLPPGTKLAQAKKF 366 (677)
T ss_dssp --------C--C-------S-GGGCCTT-EEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHH
T ss_pred --------H--H-------H-HHhcCCC-CEEEEcCHHHHHHHHHHHHhcC-------CCeeeeeccCCHHHHHHHHHHH
Confidence 0 0 0 0011233 4778899999999999998753 3477999999999999999999
Q ss_pred CC--CCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC----CCceEEc
Q 046397 340 ES--GVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ----PGECYRL 413 (901)
Q Consensus 340 ~~--g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~----~G~c~~L 413 (901)
++ |.++|||||+++++|||| +|++||++|..|. .||+..+.. ..|+|.++|.||+|||||.+ +|.||.+
T Consensus 367 ~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~~---~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l 441 (677)
T 3rc3_A 367 NDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGERE---LEPITTSQALQIAGRAGRFSSRFKEGEVTTM 441 (677)
T ss_dssp HCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES
T ss_pred HccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCccc---cccCCHHHHHHHhcCCCCCCCCCCCEEEEEE
Confidence 88 899999999999999999 8999999999987 676654332 46899999999999999996 5899999
Q ss_pred CCcc--hhhhcccCCCCcccccCccchhhhhhccC
Q 046397 414 YPRC--VYDAFAEYQLPEILRTPLQSLCLQIKSLR 446 (901)
Q Consensus 414 ~s~~--~~~~l~~~~~PEi~r~~L~~~~L~~k~l~ 446 (901)
++++ .+..+.....|+|.+..|....++++.++
T Consensus 442 ~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 442 NHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp STTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred ecchHHHHHHHHhcCcchhhhccCCChHHHHHHHh
Confidence 9887 56678889999999988888888877654
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-35 Score=341.66 Aligned_cols=336 Identities=18% Similarity=0.240 Sum_probs=208.1
Q ss_pred cHHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc-cC
Q 046397 10 AYKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK-LG 86 (901)
Q Consensus 10 i~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~-~g 86 (901)
.+.+|.++++.+.++ +++++++|||||||+++.+++++.+.... ...+++++.|+++|+.|+++++.+..+.. +.
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--PKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--CCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 456788899999987 99999999999999999999998764332 23467777799999999999997765432 22
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEec
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMS 164 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmS 164 (901)
..+++...........++|+|+||+.|++.+.... .+.++++|||||||+......+. ..+..+.. ..++.++|+||
T Consensus 220 ~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~-~~~~~i~~~~~~~~~~i~lS 298 (508)
T 3fho_A 220 TAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG-DQSMRIKHLLPRNTQIVLFS 298 (508)
T ss_dssp EEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CH-HHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcH-HHHHHHHHhCCcCCeEEEEe
Confidence 23333333333333468999999999999887665 68899999999999743322222 22333333 34578999999
Q ss_pred cCCCH--HHHHh-hhCCCcEEeeCCccccceE---EeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHH
Q 046397 165 ATLDA--ELFSS-YFGGATVINIPGFTYPVRT---HFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIAS 238 (901)
Q Consensus 165 ATl~~--~~f~~-yf~~~~~i~i~gr~~pV~~---~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (901)
||++. +.+.. ++.+...+.+....++... .+... .
T Consensus 299 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------------------------~------- 339 (508)
T 3fho_A 299 ATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDC--------------------------------Q------- 339 (508)
T ss_dssp SCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC----------------------------------------
T ss_pred CCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEEC--------------------------------C-------
Confidence 99964 34444 4444444444433222111 00000 0
Q ss_pred HHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCce
Q 046397 239 AVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRV 318 (901)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 318 (901)
........+..+......+++||||+++++++.+++.|...+.
T Consensus 340 ------------------------------~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~------- 382 (508)
T 3fho_A 340 ------------------------------SEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGH------- 382 (508)
T ss_dssp -------------------------------CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTC-------
T ss_pred ------------------------------chHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCC-------
Confidence 0000111223333444678999999999999999999987533
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHH
Q 046397 319 LLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQR 398 (901)
Q Consensus 319 ~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 398 (901)
.+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+.+.+. .. ..+-|..+|.||
T Consensus 383 ~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~--------~~----~~~~s~~~~~Qr 450 (508)
T 3fho_A 383 TVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPL--------DQ----AGRPDPQTYLHR 450 (508)
T ss_dssp CCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----C--------C---------CTHHHHHT
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCC--------cc----cCCCCHHHHHHH
Confidence 356899999999999999999999999999999999999999999999844332 11 112366788899
Q ss_pred hhhcCCC-CCCceEEcCCcch----hhhcccCCCCcccccCcc
Q 046397 399 RGRAGRV-QPGECYRLYPRCV----YDAFAEYQLPEILRTPLQ 436 (901)
Q Consensus 399 ~GRAGR~-~~G~c~~L~s~~~----~~~l~~~~~PEi~r~~L~ 436 (901)
+|||||. ++|.|+.+++... .+.+.++...++.+.+..
T Consensus 451 ~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 451 IGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp TSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred hhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 9999999 5899999987432 223444444455444443
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.6e-33 Score=334.23 Aligned_cols=393 Identities=15% Similarity=0.126 Sum_probs=185.5
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh---CC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER---GE 83 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~---~~ 83 (901)
.+..+++|.++++.+.+++++++++|||||||.++..++++.+.....+...+++|+.|+++|+.|+++.+.... +.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 456788999999999999999999999999999999999887755433324567777799999999999997765 33
Q ss_pred ccCcEeeEEEeccc--ccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-----
Q 046397 84 KLGESVGYKVRLEG--MKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR----- 154 (901)
Q Consensus 84 ~~g~~vGy~vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~----- 154 (901)
.++...|.....+. .....++|+|+||+.|.+.+.... .+.++++|||||||...-.. .+..++...+..
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS-HHHHHHHHHHHHHHCC-
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc-hHHHHHHHHHHhhhccc
Confidence 33322222110000 011247899999999999887764 58899999999999753222 344444444332
Q ss_pred CCCceEEEeccCCCH---HHHH----------hhhCCCcEEeeCCc-c--------ccceEEe-cc----c---------
Q 046397 155 RPELRLVLMSATLDA---ELFS----------SYFGGATVINIPGF-T--------YPVRTHF-LE----D--------- 198 (901)
Q Consensus 155 ~~~~kiIlmSATl~~---~~f~----------~yf~~~~~i~i~gr-~--------~pV~~~~-l~----d--------- 198 (901)
.+..++|+||||+.. ..+. ..++ ...+..... . .|..... .+ +
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcC-CeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 467899999999932 1111 2222 222222211 0 0111100 00 0
Q ss_pred ----------hhhhcccccCCCCCCcchh-hHHHhHhhc-----ccc-hhhhhh--------------------------
Q 046397 199 ----------ILDMTGYRLTPYNQIDDYG-QEKMWKMSK-----QAP-RKRKSQ-------------------------- 235 (901)
Q Consensus 199 ----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~-~~~~~~-------------------------- 235 (901)
......+...+........ ........+ ..+ ......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 0000000000000000000 000000000 000 000000
Q ss_pred ---hHHHHHHHHHhhcccccchh--------------hhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHH
Q 046397 236 ---IASAVEDTLKAANFNEYSSQ--------------TRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDD 298 (901)
Q Consensus 236 ---~~~~i~~~l~~~~~~~~~~~--------------~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~ 298 (901)
....+...........+... .................+..++........++++|||++++.+
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 00000000000000000000 0000000111112223334444444444678899999999999
Q ss_pred HHHHHHHHHhCccCCC-----CCceEEEEecCCCCHHHHHhhcCCCCC-CCeEEEEecchhhcccCCCCeEEEEeCCCcc
Q 046397 299 INSLNDKLQANRILGD-----PTRVLLLTCHGSMASSEQRLIFDEPES-GVRKIVLATNIAETSITINDVVFVIDCGKAK 372 (901)
Q Consensus 299 i~~l~~~L~~~~~~~~-----~~~~~v~~lhs~l~~~eq~~i~~~f~~-g~~kIIvaTniaetGIdIp~V~~VId~G~~k 372 (901)
++.+++.|...+.... ........+||+|+.++|.++++.|++ |..+|||||+++++|||+|+|++||+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~----- 477 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----- 477 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEE-----
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE-----
Confidence 9999999987521111 011223467899999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 373 ETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 373 ~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
||++.+ ..+|.||+|| ||.++|.||.|+++...+
T Consensus 478 ---~d~p~s----------~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 478 ---YEYSGN----------VTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp ---ETCCSC----------HHHHHHC---------CCEEEEESCHHHH
T ss_pred ---eCCCCC----------HHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 887764 4466699999 999999999999987654
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.2e-33 Score=332.59 Aligned_cols=392 Identities=16% Similarity=0.162 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+..+++|.++++.+.+++++++++|||||||+++..++++.+.....+...+++|+.|+++|+.|+++.+.+.+... +
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~ 80 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-G 80 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-T
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-C
Confidence 356789999999999999999999999999999999999887765433224467777799999999999997765321 2
Q ss_pred cEeeEEEeccccc------CCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh----
Q 046397 87 ESVGYKVRLEGMK------GRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR---- 154 (901)
Q Consensus 87 ~~vGy~vr~e~~~------~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~---- 154 (901)
..++.-....... ...++|+|+||++|.+.+.... .+.++++|||||||...-... +..++...+..
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDHKLGE 159 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHHHTSS
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHhhhcc
Confidence 2222211111111 1247899999999999887755 578899999999997543332 33333333332
Q ss_pred --CCCceEEEeccCCCH----------HHHH---hhhCCCcEEeeCCcc---------ccceEE-eccc-----------
Q 046397 155 --RPELRLVLMSATLDA----------ELFS---SYFGGATVINIPGFT---------YPVRTH-FLED----------- 198 (901)
Q Consensus 155 --~~~~kiIlmSATl~~----------~~f~---~yf~~~~~i~i~gr~---------~pV~~~-~l~d----------- 198 (901)
.+..++++||||+.. +.+. ..+ +++.+...... .|.... ..+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 266899999999943 1111 222 22333322210 111110 0000
Q ss_pred ------------hhhhc-ccccCCCCCCcch-hhHHHhHhhc-----ccc-hhhhhhhH---------------------
Q 046397 199 ------------ILDMT-GYRLTPYNQIDDY-GQEKMWKMSK-----QAP-RKRKSQIA--------------------- 237 (901)
Q Consensus 199 ------------~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-----~~~-~~~~~~~~--------------------- 237 (901)
++... ............. .......... ..+ ........
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00000 0000000000000 0000000000 000 00000000
Q ss_pred --------HHHHHHHHhhcccccchhhh--------------hhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCC
Q 046397 238 --------SAVEDTLKAANFNEYSSQTR--------------ESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTG 295 (901)
Q Consensus 238 --------~~i~~~l~~~~~~~~~~~~~--------------~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~ 295 (901)
..+...........+..... ...............+..++.........+++|||+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00000000000000000000 00000001122334455555555555678999999999
Q ss_pred HHHHHHHHHHHHhCccCCC-----CCceEEEEecCCCCHHHHHhhcCCCCC-CCeEEEEecchhhcccCCCCeEEEEeCC
Q 046397 296 WDDINSLNDKLQANRILGD-----PTRVLLLTCHGSMASSEQRLIFDEPES-GVRKIVLATNIAETSITINDVVFVIDCG 369 (901)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~~-----~~~~~v~~lhs~l~~~eq~~i~~~f~~-g~~kIIvaTniaetGIdIp~V~~VId~G 369 (901)
+++++.+++.|...+.... ........+||+|+.++|.++++.|++ |..+|||||+++++|||+|+|++||+
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~-- 476 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL-- 476 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE--
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE--
Confidence 9999999999998653211 011223466889999999999999999 99999999999999999999999999
Q ss_pred CccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 370 KAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 370 ~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
||++.+...|+ ||+|| ||..+|.||.|+++...+
T Consensus 477 ------~d~p~s~~~~~----------Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 477 ------YEYVGNVIKMI----------QTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ------ESCCSSCCCEE----------CSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ------eCCCCCHHHHH----------HhcCc-CcCCCceEEEEEcCCCHH
Confidence 99888887777 99999 999999999999887553
No 30
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.1e-33 Score=333.13 Aligned_cols=324 Identities=16% Similarity=0.169 Sum_probs=219.7
Q ss_pred cHHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC--CCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 10 AYKEKNRLLTAIS--QNQVVIISGETGCGKTTQVPQFILESEITSVR--GAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 10 i~~~q~~il~~i~--~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~--~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
.+++|.++++.+. +++++++++|||||||+++.+++++.+..... ....+++|+.|+|+||.|+++++....+...
T Consensus 95 ~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~ 174 (563)
T 3i5x_A 95 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 174 (563)
T ss_dssp CCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc
Confidence 6789999999998 67899999999999999999999988765432 1234677777999999999999987643211
Q ss_pred Cc---EeeEEEecc-------cccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCc--chhHHHHHHHHH
Q 046397 86 GE---SVGYKVRLE-------GMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGM--NEDFLLIVLKDL 151 (901)
Q Consensus 86 g~---~vGy~vr~e-------~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~--~~d~ll~~lk~l 151 (901)
+. .+....... ......++|+|+||+.|+..+.... .+..+++|||||||+-.- ..+.+..++..+
T Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l 254 (563)
T 3i5x_A 175 GLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 254 (563)
T ss_dssp GGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred ccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhh
Confidence 11 111101000 0112357899999999998876542 578899999999995211 112222222222
Q ss_pred Hhh----CCCceEEEeccCCCHH--HHHhhh-CCCcEEeeCCcc--c-----cceEEeccchhhhcccccCCCCCCcchh
Q 046397 152 LSR----RPELRLVLMSATLDAE--LFSSYF-GGATVINIPGFT--Y-----PVRTHFLEDILDMTGYRLTPYNQIDDYG 217 (901)
Q Consensus 152 l~~----~~~~kiIlmSATl~~~--~f~~yf-~~~~~i~i~gr~--~-----pV~~~~l~d~~~~~~~~~~~~~~~~~~~ 217 (901)
... .++.++|+||||++.. .+...+ .....+.+.... . .+...+...
T Consensus 255 ~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 315 (563)
T 3i5x_A 255 NEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS------------------- 315 (563)
T ss_dssp HHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE-------------------
T ss_pred hhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC-------------------
Confidence 222 3478999999999753 333333 332222221100 0 000000000
Q ss_pred hHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHH
Q 046397 218 QEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWD 297 (901)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~ 297 (901)
.... ... ...+..+...+......+++||||+++.
T Consensus 316 ------------~~~~----~~~-----------------------------~~~~~~l~~~~~~~~~~~~~iVF~~s~~ 350 (563)
T 3i5x_A 316 ------------EKFA----NSI-----------------------------FAAVEHIKKQIKERDSNYKAIIFAPTVK 350 (563)
T ss_dssp ------------SSTT----HHH-----------------------------HHHHHHHHHHHHHTTTCCEEEEECSCHH
T ss_pred ------------chhH----hhH-----------------------------HHHHHHHHHHHhhcCCCCcEEEEcCcHH
Confidence 0000 000 0112223333444456789999999999
Q ss_pred HHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccc
Q 046397 298 DINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYD 377 (901)
Q Consensus 298 ~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd 377 (901)
+++.+++.|..... ..+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+ ||
T Consensus 351 ~~~~l~~~L~~~~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~ 418 (563)
T 3i5x_A 351 FTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG 418 (563)
T ss_dssp HHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES
T ss_pred HHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------EC
Confidence 99999999987521 1245789999999999999999999999999999999999999999999999 66
Q ss_pred cCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 378 ALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 378 ~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
.+. |..+|.||+|||||. .+|.|+.+++....
T Consensus 419 ~p~----------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 419 VPS----------ELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp CCS----------STTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred CCC----------chhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 655 445667999999999 58999999987654
No 31
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-34 Score=325.24 Aligned_cols=314 Identities=19% Similarity=0.280 Sum_probs=117.6
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
..+++|.++++.+.+++++++++|||+|||+++..++++.+..... ..+++++.|+++|+.|+++++.+.... .+..
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~ 119 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK--APQALMLAPTRELALQIQKVVMALAFH-MDIK 119 (394)
T ss_dssp SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCC--SCCEEEECSSHHHHHHHHHHHHHHTTT-SCCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCC--CCCEEEEcCCHHHHHHHHHHHHHHhcc-CCee
Confidence 4678999999999999999999999999999999998887643322 335666679999999999988765432 2222
Q ss_pred eeEEEeccc-----ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEE
Q 046397 89 VGYKVRLEG-----MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLV 161 (901)
Q Consensus 89 vGy~vr~e~-----~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiI 161 (901)
++.-..... .....++|+|+||+.|++.+.... .+.++++||+||+|+. ...++.. .+..++. ..++.++|
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~-~~~~~~~-~~~~~~~~~~~~~~~i 197 (394)
T 1fuu_A 120 VHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM-LSSGFKE-QIYQIFTLLPPTTQVV 197 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-HHTTCHH-HHHHHHHHSCTTCEEE
T ss_pred EEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh-hCCCcHH-HHHHHHHhCCCCceEE
Confidence 221111100 001246899999999999887655 5788999999999962 1122222 2233333 34678999
Q ss_pred EeccCCCHH---HHHhhhCCCcEEeeCCccccce---EEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhh
Q 046397 162 LMSATLDAE---LFSSYFGGATVINIPGFTYPVR---THFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQ 235 (901)
Q Consensus 162 lmSATl~~~---~f~~yf~~~~~i~i~gr~~pV~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (901)
+||||++.. .+..++.+...+.+.....+.. .+|..
T Consensus 198 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 239 (394)
T 1fuu_A 198 LLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVN-------------------------------------- 239 (394)
T ss_dssp EECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------------------------------
T ss_pred EEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEE--------------------------------------
Confidence 999999764 3445555443333322111000 00000
Q ss_pred hHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCC
Q 046397 236 IASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDP 315 (901)
Q Consensus 236 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~ 315 (901)
+.. . +.....+..+......+++||||+++++++.+++.|...+
T Consensus 240 ----~~~-----------------------~----~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----- 283 (394)
T 1fuu_A 240 ----VEE-----------------------E----EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK----- 283 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cCc-----------------------h----hhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC-----
Confidence 000 0 0000112222333456799999999999999999998653
Q ss_pred CceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcH
Q 046397 316 TRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSA 395 (901)
Q Consensus 316 ~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~ 395 (901)
+.+..+||+++..+|.++++.|++|..+|||||+++++|+|+|++++||+ ||++. |..+|
T Consensus 284 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~--------~~~p~----------s~~~~ 343 (394)
T 1fuu_A 284 --FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YDLPA----------NKENY 343 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE--------eCCCC----------CHHHH
Confidence 34678999999999999999999999999999999999999999999998 55543 45566
Q ss_pred HHHhhhcCCC-CCCceEEcCCcchhhh
Q 046397 396 QQRRGRAGRV-QPGECYRLYPRCVYDA 421 (901)
Q Consensus 396 ~QR~GRAGR~-~~G~c~~L~s~~~~~~ 421 (901)
.||+|||||. ++|.|+.++++.....
T Consensus 344 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 344 IHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ---------------------------
T ss_pred HHHcCcccCCCCCceEEEEEchhHHHH
Confidence 7999999999 6899999999876543
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.3e-33 Score=307.97 Aligned_cols=295 Identities=21% Similarity=0.240 Sum_probs=211.7
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
..+++|.++++.+.+++++++++|||+|||+++..++++. + .+++++.|+++|+.|+++++.+... ..+..
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~--~~~liv~P~~~L~~q~~~~~~~~~~-~~~~~ 86 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------G--MKSLVVTPTRELTRQVASHIRDIGR-YMDTK 86 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------T--CCEEEECSSHHHHHHHHHHHHHHTT-TSCCC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------c--CCEEEEeCCHHHHHHHHHHHHHHhh-hcCCc
Confidence 4689999999999999999999999999999998888763 2 2456666999999999999976532 22323
Q ss_pred eeEEEeccc-----ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEE
Q 046397 89 VGYKVRLEG-----MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLV 161 (901)
Q Consensus 89 vGy~vr~e~-----~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiI 161 (901)
++.-..... .....++|+|+||+.|++.+.... .+.++++||+||+|.. ...-+...++.++... +..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~--~~~~~~~~~~~~~~~~~~~~~~~ 164 (337)
T 2z0m_A 87 VAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM--FEMGFIDDIKIILAQTSNRKITG 164 (337)
T ss_dssp EEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH--HHTTCHHHHHHHHHHCTTCSEEE
T ss_pred EEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh--hccccHHHHHHHHhhCCcccEEE
Confidence 322111100 011347899999999999877654 5788999999999952 1111223344444443 456788
Q ss_pred EeccCCCHH---HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHH
Q 046397 162 LMSATLDAE---LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIAS 238 (901)
Q Consensus 162 lmSATl~~~---~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (901)
+||||++.. .+..|+.+...+........+...+..- . ++
T Consensus 165 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~----------------------- 207 (337)
T 2z0m_A 165 LFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHV---------K-----DD----------------------- 207 (337)
T ss_dssp EEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEEC---------S-----SS-----------------------
T ss_pred EEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEe---------C-----hH-----------------------
Confidence 999999765 4556666554443222112222222110 0 00
Q ss_pred HHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCce
Q 046397 239 AVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRV 318 (901)
Q Consensus 239 ~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~ 318 (901)
.. ..+ ........+++|||++++++++.+++.|..
T Consensus 208 -------------------------------~~---~~~-~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---------- 242 (337)
T 2z0m_A 208 -------------------------------WR---SKV-QALRENKDKGVIVFVRTRNRVAKLVRLFDN---------- 242 (337)
T ss_dssp -------------------------------SH---HHH-HHHHTCCCSSEEEECSCHHHHHHHHTTCTT----------
T ss_pred -------------------------------HH---HHH-HHHHhCCCCcEEEEEcCHHHHHHHHHHhhh----------
Confidence 00 000 112235678999999999999999887752
Q ss_pred EEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHH
Q 046397 319 LLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQR 398 (901)
Q Consensus 319 ~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 398 (901)
+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+ ||++. |..+|.||
T Consensus 243 -~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~~~~----------s~~~~~Q~ 303 (337)
T 2z0m_A 243 -AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FDAPQ----------DLRTYIHR 303 (337)
T ss_dssp -EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SSCCS----------SHHHHHHH
T ss_pred -hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ecCCC----------CHHHhhHh
Confidence 558999999999999999999999999999999999999999999999 55543 55677899
Q ss_pred hhhcCCC-CCCceEEcCC
Q 046397 399 RGRAGRV-QPGECYRLYP 415 (901)
Q Consensus 399 ~GRAGR~-~~G~c~~L~s 415 (901)
+|||||. ++|.|+.++.
T Consensus 304 ~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HTTBCGGGCCEEEEEEES
T ss_pred cCccccCCCCceEEEEEe
Confidence 9999999 6899999988
No 33
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.9e-33 Score=323.38 Aligned_cols=286 Identities=19% Similarity=0.190 Sum_probs=206.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEec-ccccCC
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRL-EGMKGR 101 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~-e~~~~~ 101 (901)
++++++++||||||||+++..++++.+... +. +++|++||++||.|+++.+. +..+++.... +....+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~--~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~ 69 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RL--RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTG 69 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TC--CEEEEESSHHHHHHHHHHTT-------TSCEEEC---------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CC--CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCC
Confidence 478999999999999999988888666543 22 56666699999999887773 3345544432 333345
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHHHhhhCCCcE
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATV 181 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~~~~~ 181 (901)
...+.++|.+.+.+.+..+..+.++++|||||+|+++...+.....++.+. ..++.++|+||||++... ..
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~-~~------- 140 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGTT-EA------- 140 (431)
T ss_dssp CCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTCC-CS-------
T ss_pred CceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcch-hh-------
Confidence 677889999999988888778999999999999987666666666666654 356899999999986531 11
Q ss_pred EeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcc
Q 046397 182 INIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLS 261 (901)
Q Consensus 182 i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 261 (901)
++....|+...-.. + .. .
T Consensus 141 --~~~~~~~i~~~~~~-------~--~~-~-------------------------------------------------- 158 (431)
T 2v6i_A 141 --FPPSNSPIIDEETR-------I--PD-K-------------------------------------------------- 158 (431)
T ss_dssp --SCCCSSCCEEEECC-------C--CS-S--------------------------------------------------
T ss_pred --hcCCCCceeecccc-------C--CH-H--------------------------------------------------
Confidence 11111111110000 0 00 0
Q ss_pred cCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCC
Q 046397 262 CWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPES 341 (901)
Q Consensus 262 ~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~ 341 (901)
. ... ++..+. ...+++||||+++++++.+++.|...+ +.+..+||+ +|.++++.|++
T Consensus 159 -----~--~~~---~~~~l~--~~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~v~~lhg~----~r~~~~~~f~~ 215 (431)
T 2v6i_A 159 -----A--WNS---GYEWIT--EFDGRTVWFVHSIKQGAEIGTCLQKAG-------KKVLYLNRK----TFESEYPKCKS 215 (431)
T ss_dssp -----C--CSS---CCHHHH--SCSSCEEEECSSHHHHHHHHHHHHHTT-------CCEEEESTT----THHHHTTHHHH
T ss_pred -----H--HHH---HHHHHH--cCCCCEEEEeCCHHHHHHHHHHHHHcC-------CeEEEeCCc----cHHHHHHhhcC
Confidence 0 000 001111 236799999999999999999998762 347799997 67889999999
Q ss_pred CCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC-CCceEEcCC
Q 046397 342 GVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-PGECYRLYP 415 (901)
Q Consensus 342 g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-~G~c~~L~s 415 (901)
|+.+|||||+++|+|||+| +.+|||+|..+...|| ..++......|.|.++|.||+|||||.+ .+.|+.+|.
T Consensus 216 g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 216 EKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999999999 9999999999998888 5566666778899999999999999996 344555554
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.8e-33 Score=333.10 Aligned_cols=310 Identities=18% Similarity=0.132 Sum_probs=215.7
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
..++|.++++.+.+++++++.+|||+|||+.+.++++.. ...++|+.|+++|+.|+++++.+. |.......
T Consensus 45 ~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l~ 115 (591)
T 2v1x_A 45 FRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPLISLMEDQLMVLKQL-GISATMLN 115 (591)
T ss_dssp CCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSCHHHHHHHHHHHHHH-TCCEEECC
T ss_pred CCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEEe
Confidence 346799999999999999999999999999887777642 136777779999999999998664 43322111
Q ss_pred eEEEecc------cc--cCCCceEEEEcHHHHH------HHHhcCCCCCCceEEEEecCcccC-----cchhHHHHHHHH
Q 046397 90 GYKVRLE------GM--KGRDTRLLFCTTGILL------RRLLVDRNLKGVTHVIVDEVHERG-----MNEDFLLIVLKD 150 (901)
Q Consensus 90 Gy~vr~e------~~--~~~~t~Ii~~T~g~Ll------r~L~~~~~l~~~~~IIIDE~HeR~-----~~~d~ll~~lk~ 150 (901)
|.....+ .. .....+|+|+||+.|. +.+.....+.++++|||||||+.. ...++. .+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~--~l~~ 193 (591)
T 2v1x_A 116 ASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK--ALGI 193 (591)
T ss_dssp SSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGG--GGGH
T ss_pred CCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHH--HHHH
Confidence 1110000 00 2356899999999774 333333357789999999999633 222221 1234
Q ss_pred HHhhCCCceEEEeccCCCHH---HHHhhhCCCc-EEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhc
Q 046397 151 LLSRRPELRLVLMSATLDAE---LFSSYFGGAT-VINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSK 226 (901)
Q Consensus 151 ll~~~~~~kiIlmSATl~~~---~f~~yf~~~~-~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (901)
+....|+.++|+||||++.. .+..+++... .....+...|.-.+.+..
T Consensus 194 l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~---------------------------- 245 (591)
T 2v1x_A 194 LKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQ---------------------------- 245 (591)
T ss_dssp HHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEE----------------------------
T ss_pred HHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEe----------------------------
Confidence 44567889999999999875 4455665332 222222221211110000
Q ss_pred ccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHH
Q 046397 227 QAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKL 306 (901)
Q Consensus 227 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L 306 (901)
... ...+.+..++..+.....++++||||+++++++.+++.|
T Consensus 246 -~~~-------------------------------------~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L 287 (591)
T 2v1x_A 246 -KPS-------------------------------------NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSL 287 (591)
T ss_dssp -CCS-------------------------------------SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHH
T ss_pred -CCC-------------------------------------cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHH
Confidence 000 000111222333333345789999999999999999999
Q ss_pred HhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccc
Q 046397 307 QANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLL 386 (901)
Q Consensus 307 ~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~ 386 (901)
...+. .+.++||+|+.++|.++++.|..|..+|||||+++++|||+|+|++||+ ||.+.
T Consensus 288 ~~~g~-------~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~~p~------ 346 (591)
T 2v1x_A 288 QNLGI-------HAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HSMSK------ 346 (591)
T ss_dssp HHTTC-------CEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SSCCS------
T ss_pred HHCCC-------CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eCCCC------
Confidence 87643 3779999999999999999999999999999999999999999999999 55544
Q ss_pred cccccHhcHHHHhhhcCCC-CCCceEEcCCcchhhh
Q 046397 387 PSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVYDA 421 (901)
Q Consensus 387 ~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~~ 421 (901)
|..+|.||+|||||. .+|.|+.+|+..+...
T Consensus 347 ----s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 347 ----SMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp ----SHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred ----CHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 556777999999999 5899999998876543
No 35
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-32 Score=329.42 Aligned_cols=323 Identities=17% Similarity=0.178 Sum_probs=219.6
Q ss_pred cHHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC--CCeeEEEEecchHHHHHHHHHHHHHHhCC--
Q 046397 10 AYKEKNRLLTAIS--QNQVVIISGETGCGKTTQVPQFILESEITSVR--GAVCSIICTQPRRISAMSVSERVASERGE-- 83 (901)
Q Consensus 10 i~~~q~~il~~i~--~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~--~~~~~IlvtqPrr~la~qva~rva~e~~~-- 83 (901)
..++|.++++.+. +++++++++|||||||+++.+++++.+..... ....+++|+.|+|+||.|+++++.+....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 6789999999998 78899999999999999999999988765431 22346777779999999999999876422
Q ss_pred --ccCcEeeEEEec-------ccccCCCceEEEEcHHHHHHHHhcC--CCCCCceEEEEecCcccCc--chhHHHHHHHH
Q 046397 84 --KLGESVGYKVRL-------EGMKGRDTRLLFCTTGILLRRLLVD--RNLKGVTHVIVDEVHERGM--NEDFLLIVLKD 150 (901)
Q Consensus 84 --~~g~~vGy~vr~-------e~~~~~~t~Ii~~T~g~Llr~L~~~--~~l~~~~~IIIDE~HeR~~--~~d~ll~~lk~ 150 (901)
.....+.. ... .......++|+|+||+.|+..+... ..+..+++|||||||+..- ..+.+..++..
T Consensus 124 ~~~~~~~~~~-~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~ 202 (579)
T 3sqw_A 124 GLKKYACVSL-VGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 202 (579)
T ss_dssp GGTTSCEEEE-CTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred cccceEEEEE-ECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHH
Confidence 11111110 000 0011135789999999999887653 2678899999999996311 11222223332
Q ss_pred HHhhC----CCceEEEeccCCCHH--HHH-hhhCCCcEEeeCCcc--c-----cceEEeccchhhhcccccCCCCCCcch
Q 046397 151 LLSRR----PELRLVLMSATLDAE--LFS-SYFGGATVINIPGFT--Y-----PVRTHFLEDILDMTGYRLTPYNQIDDY 216 (901)
Q Consensus 151 ll~~~----~~~kiIlmSATl~~~--~f~-~yf~~~~~i~i~gr~--~-----pV~~~~l~d~~~~~~~~~~~~~~~~~~ 216 (901)
+.... ++.++++||||++.. .+. .++.....+.+.... . .+...+...
T Consensus 203 l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------ 264 (579)
T 3sqw_A 203 LNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS------------------ 264 (579)
T ss_dssp HHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE------------------
T ss_pred hhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe------------------
Confidence 22222 378999999999753 232 333333333221100 0 000000000
Q ss_pred hhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCH
Q 046397 217 GQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGW 296 (901)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~ 296 (901)
.... ... ..++..+...+......+++||||+++
T Consensus 265 -------------~~~~----~~~-----------------------------~~~~~~l~~~~~~~~~~~~~iVF~~t~ 298 (579)
T 3sqw_A 265 -------------EKFA----NSI-----------------------------FAAVEHIKKQIKERDSNYKAIIFAPTV 298 (579)
T ss_dssp -------------SSTT----HHH-----------------------------HHHHHHHHHHHHHTTTCCEEEEECSSH
T ss_pred -------------cchh----hhH-----------------------------HHHHHHHHHHHhhcCCCCcEEEECCcH
Confidence 0000 000 011222333344445678999999999
Q ss_pred HHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccccc
Q 046397 297 DDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSY 376 (901)
Q Consensus 297 ~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~y 376 (901)
.+++.+++.|..... ..+.+..+||+|+..+|.++++.|+.|..+|||||+++++|||+|+|++||+ |
T Consensus 299 ~~~~~l~~~L~~~~~----~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~ 366 (579)
T 3sqw_A 299 KFTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------I 366 (579)
T ss_dssp HHHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------E
T ss_pred HHHHHHHHHHHHhhc----CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------c
Confidence 999999999987521 1244778999999999999999999999999999999999999999999999 6
Q ss_pred ccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 377 DALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 377 d~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
|++. |..+|.||+|||||. ++|.|+.+++....
T Consensus 367 ~~p~----------s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 367 GVPS----------ELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp SCCS----------STTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred CCCC----------CHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 6655 445677999999999 48999999987654
No 36
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.7e-33 Score=321.68 Aligned_cols=290 Identities=18% Similarity=0.162 Sum_probs=202.3
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecc-cc
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLE-GM 98 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e-~~ 98 (901)
++.++++++++||||||||+++..++++.+... + .++++++|||+||.|+++.+. +..+++....- ..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~--~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~~v 72 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--R--LRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFSAH 72 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--T--CCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--C--CeEEEEcchHHHHHHHHHHHh-------cCCeEEecccceec
Confidence 356889999999999999999988888876542 2 345566699999999998874 22344444321 23
Q ss_pred cCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHHHhhhCC
Q 046397 99 KGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGG 178 (901)
Q Consensus 99 ~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~~ 178 (901)
.++..-+-+++.+.+...+.....+.++++|||||+|+.+...+..+..+..+.. .++.++++||||++... ..+...
T Consensus 73 ~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~ 150 (440)
T 1yks_A 73 GSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPHS 150 (440)
T ss_dssp CCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred cCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhhc
Confidence 3445566788888888888888789999999999999875555566666666554 46799999999986541 111110
Q ss_pred CcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhh
Q 046397 179 ATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRE 258 (901)
Q Consensus 179 ~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 258 (901)
..|+...... ... .
T Consensus 151 ---------~~~~~~~~~~---------~~~-~----------------------------------------------- 164 (440)
T 1yks_A 151 ---------NGEIEDVQTD---------IPS-E----------------------------------------------- 164 (440)
T ss_dssp ---------SSCEEEEECC---------CCS-S-----------------------------------------------
T ss_pred ---------CCCeeEeeec---------cCh-H-----------------------------------------------
Confidence 0111110000 000 0
Q ss_pred hcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCC
Q 046397 259 SLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDE 338 (901)
Q Consensus 259 ~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~ 338 (901)
.. ..+ +..+.+ .++++|||||++++++.+++.|...+ +.+..+|| ++|.++++.
T Consensus 165 --------~~-~~~----~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~-------~~v~~lhg----~~R~~~~~~ 218 (440)
T 1yks_A 165 --------PW-NTG----HDWILA--DKRPTAWFLPSIRAANVMAASLRKAG-------KSVVVLNR----KTFEREYPT 218 (440)
T ss_dssp --------CC-SSS----CHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTT-------CCEEECCS----SSCC-----
T ss_pred --------HH-HHH----HHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcC-------CCEEEecc----hhHHHHHhh
Confidence 00 000 011111 36799999999999999999998763 34778999 478899999
Q ss_pred CCCCCeEEEEecchhhcccCCCCeEEEEeCCCcccccc-ccCCCccccccccccHhcHHHHhhhcCCC--CCCceEEcCC
Q 046397 339 PESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSY-DALNNTSCLLPSWISTVSAQQRRGRAGRV--QPGECYRLYP 415 (901)
Q Consensus 339 f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~y-d~~~~~~~l~~~~iSka~~~QR~GRAGR~--~~G~c~~L~s 415 (901)
|++|+.+|||||+++|+|||+| +++|||+|..+...| +...++......|.|.++|.||+|||||. .+|.||.+|+
T Consensus 219 F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 219 IKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp ---CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred hcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 9999999999999999999999 999999999887766 33334555566789999999999999997 4899999984
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=346.84 Aligned_cols=390 Identities=15% Similarity=0.190 Sum_probs=212.4
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-CCCeeEEEEecchHHHHHHH-HHHHHHHhC
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-RGAVCSIICTQPRRISAMSV-SERVASERG 82 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-~~~~~~IlvtqPrr~la~qv-a~rva~e~~ 82 (901)
+..++.+.+|.++++.+.++++++|++|||||||+++.+++++.+.... .+...+++|++|+++|+.|+ ++++.+..+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 5678899999999999999999999999999999999999887765431 12224566667999999999 999988876
Q ss_pred C--ccCcEeeEEEeccc--ccCCCceEEEEcHHHHHHHHhcC-------CCCCCceEEEEecCccc---CcchhHHHHHH
Q 046397 83 E--KLGESVGYKVRLEG--MKGRDTRLLFCTTGILLRRLLVD-------RNLKGVTHVIVDEVHER---GMNEDFLLIVL 148 (901)
Q Consensus 83 ~--~~g~~vGy~vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~-------~~l~~~~~IIIDE~HeR---~~~~d~ll~~l 148 (901)
. .++...|.....+. ......+|+|+||++|.+.+.+. ..+.++++|||||||.- +.....+..++
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 4 33333332221110 01145799999999999887432 25788999999999952 11122222222
Q ss_pred HHHH-hhC---------CCceEEEeccCCCHH----------HH---HhhhCCCcEEeeCCc--------cccceEEecc
Q 046397 149 KDLL-SRR---------PELRLVLMSATLDAE----------LF---SSYFGGATVINIPGF--------TYPVRTHFLE 197 (901)
Q Consensus 149 k~ll-~~~---------~~~kiIlmSATl~~~----------~f---~~yf~~~~~i~i~gr--------~~pV~~~~l~ 197 (901)
...+ ... +.+++|+||||+... .+ ...++...+...... ..|...+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 2211 122 778999999999641 11 122222111111110 0111111000
Q ss_pred c-------------hhhhcc--cccCCCCCCcchh-hHHHhHhhcc-------cchhhhhhh------------------
Q 046397 198 D-------------ILDMTG--YRLTPYNQIDDYG-QEKMWKMSKQ-------APRKRKSQI------------------ 236 (901)
Q Consensus 198 d-------------~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~------------------ 236 (901)
+ +..... +...+........ .......... ........+
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 0000000000000 0000000000 000000000
Q ss_pred HHHHHHHHHhhcccc-------------c--------------chhhhhhcccCCCCCCchhhHHHHHHHHHhhcC-CCc
Q 046397 237 ASAVEDTLKAANFNE-------------Y--------------SSQTRESLSCWNPDCIGFNLIEYVLCYICEKER-PGA 288 (901)
Q Consensus 237 ~~~i~~~l~~~~~~~-------------~--------------~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~-~g~ 288 (901)
...+...+....... . ....................+..++.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000000000000000 0 000000000000011122333344444444444 799
Q ss_pred EEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCC--------CCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC
Q 046397 289 VLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGS--------MASSEQRLIFDEPESGVRKIVLATNIAETSITIN 360 (901)
Q Consensus 289 iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~--------l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp 360 (901)
+|||+++++.++.+++.|...+.+.. ..+.+..+||+ |+..+|.++++.|++|..+|||||+++++|||+|
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred EEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 99999999999999999997633221 23567799999 9999999999999999999999999999999999
Q ss_pred CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCC
Q 046397 361 DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYP 415 (901)
Q Consensus 361 ~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s 415 (901)
+|++||+ ||++.+ ..+|.||+|||||.+ .++.++.
T Consensus 482 ~v~~VI~--------~d~p~s----------~~~~~Qr~GRArr~g--~~~~l~~ 516 (699)
T 4gl2_A 482 ECNIVIR--------YGLVTN----------EIAMVQARGRARADE--STYVLVA 516 (699)
T ss_dssp SCCCCEE--------ESCCCC----------HHHHHHHHTTSCSSS--CEEEEEE
T ss_pred cCCEEEE--------eCCCCC----------HHHHHHHcCCCCCCC--ceEEEEE
Confidence 9999998 887664 456669999987754 4454543
No 38
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.4e-33 Score=333.80 Aligned_cols=288 Identities=20% Similarity=0.240 Sum_probs=212.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEec-ccccC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRL-EGMKG 100 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~-e~~~~ 100 (901)
.++++++++||||||||++++.++++.+... + .+++|++|||+||.|+++++. .+ .+++.... .....
T Consensus 239 ~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~--~~~lilaPTr~La~Q~~~~l~-----~~--~i~~~~~~l~~v~t 307 (673)
T 2wv9_A 239 KKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--R--LRTAVLAPTRVVAAEMAEALR-----GL--PVRYLTPAVQREHS 307 (673)
T ss_dssp STTCEEEECCCTTTTTTTTHHHHHHHHHHHT--T--CCEEEEESSHHHHHHHHHHTT-----TS--CCEECCC---CCCC
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--C--CcEEEEccHHHHHHHHHHHHh-----cC--CeeeecccccccCC
Confidence 3899999999999999999988888776542 2 356666699999999998874 11 23343321 22334
Q ss_pred CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHHHhhhCCCc
Q 046397 101 RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGAT 180 (901)
Q Consensus 101 ~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~~~~ 180 (901)
+...+.+++.+.+.+.+..+..+.++++|||||+|+.+...+..+..++.++. .++.++|+||||++... ..+.
T Consensus 308 p~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~i-~~~~---- 381 (673)
T 2wv9_A 308 GNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGTS-DPFP---- 381 (673)
T ss_dssp SCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSC----
T ss_pred HHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChhh-hhhc----
Confidence 55678899999999988888889999999999999976666677777776654 36789999999986431 1111
Q ss_pred EEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhc
Q 046397 181 VINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESL 260 (901)
Q Consensus 181 ~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l 260 (901)
....|+...... ...
T Consensus 382 -----~~~~~i~~v~~~---------~~~--------------------------------------------------- 396 (673)
T 2wv9_A 382 -----DTNSPVHDVSSE---------IPD--------------------------------------------------- 396 (673)
T ss_dssp -----CCSSCEEEEECC---------CCS---------------------------------------------------
T ss_pred -----ccCCceEEEeee---------cCH---------------------------------------------------
Confidence 111111110000 000
Q ss_pred ccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCC
Q 046397 261 SCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPE 340 (901)
Q Consensus 261 ~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~ 340 (901)
... .. ++..+. ...+++||||+++++++.+++.|...+ +.+..+||. +|.++++.|+
T Consensus 397 -----~~~-~~----~l~~l~--~~~~~~lVF~~s~~~~e~la~~L~~~g-------~~v~~lHg~----eR~~v~~~F~ 453 (673)
T 2wv9_A 397 -----RAW-SS----GFEWIT--DYAGKTVWFVASVKMSNEIAQCLQRAG-------KRVIQLNRK----SYDTEYPKCK 453 (673)
T ss_dssp -----SCC-SS----CCHHHH--SCCSCEEEECSSHHHHHHHHHHHHTTT-------CCEEEECSS----SHHHHGGGGG
T ss_pred -----HHH-HH----HHHHHH--hCCCCEEEEECCHHHHHHHHHHHHhCC-------CeEEEeChH----HHHHHHHHHH
Confidence 000 00 011111 246899999999999999999998763 347789994 8899999999
Q ss_pred CCCeEEEEecchhhcccCCCCeEEEEeCCCcccc--ccccCCCccccccccccHhcHHHHhhhcCCC--CCCceEEcCC
Q 046397 341 SGVRKIVLATNIAETSITINDVVFVIDCGKAKET--SYDALNNTSCLLPSWISTVSAQQRRGRAGRV--QPGECYRLYP 415 (901)
Q Consensus 341 ~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~--~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~--~~G~c~~L~s 415 (901)
+|+.+|||||+++|+|||+| +++|||+|..... .||+..++..+...|.|.++|.||+|||||. ++|.||.++.
T Consensus 454 ~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 454 NGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp TCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred CCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 99999999999999999999 9999999976553 3676666666677899999999999999998 5899999975
No 39
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=318.13 Aligned_cols=376 Identities=16% Similarity=0.216 Sum_probs=228.5
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC-
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE- 83 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~- 83 (901)
...++.+++|.++++.+.++ ++++.+|||+|||+++..++++... ..+ .+++|+.|+++|+.|+++++.+..+.
T Consensus 5 ~~~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~--~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 5 RDLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYG--GKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp HHHHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSC--SCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred cCCCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCC--CeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 34567899999999999998 9999999999999999999887654 222 35666679999999999999888764
Q ss_pred --ccCcEeeEEEecc-cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 84 --KLGESVGYKVRLE-GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 84 --~~g~~vGy~vr~e-~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
.++...|.....+ .......+|+|+|++.|.+.+.... .+.++++|||||||... .......+.+.+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~-~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV-GNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS-TTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccC-CCCcHHHHHHHHHhcCCCCe
Confidence 2222222110000 0001246899999999999887654 67889999999999632 22234444555555667889
Q ss_pred EEEeccCCC--HHHHHhhhC---CCcEEeeCCcc-------ccceEEeccchhhhcccccCCCCCCcch---hhHHHh--
Q 046397 160 LVLMSATLD--AELFSSYFG---GATVINIPGFT-------YPVRTHFLEDILDMTGYRLTPYNQIDDY---GQEKMW-- 222 (901)
Q Consensus 160 iIlmSATl~--~~~f~~yf~---~~~~i~i~gr~-------~pV~~~~l~d~~~~~~~~~~~~~~~~~~---~~~~~~-- 222 (901)
+++||||+. .+.+.+++. ..+........ .+....+... ... ...... ....+.
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~ 229 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRV-------DLP--EIYKEVRKLLREMLRDA 229 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEE-------CCC--HHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEec-------CCc--HHHHHHHHHHHHHHHHH
Confidence 999999995 444444443 22111111100 0111111000 000 000000 000000
Q ss_pred -----Hhhcc------cchhhhhhhHHHHHHHHHhhcccccc----------------------h-hhhhhc--------
Q 046397 223 -----KMSKQ------APRKRKSQIASAVEDTLKAANFNEYS----------------------S-QTRESL-------- 260 (901)
Q Consensus 223 -----~~~~~------~~~~~~~~~~~~i~~~l~~~~~~~~~----------------------~-~~~~~l-------- 260 (901)
..... ............+...+.......|. . .....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (494)
T 1wp9_A 230 LKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAK 309 (494)
T ss_dssp HHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhc
Confidence 00000 00000000000000000000000000 0 000000
Q ss_pred --------------------------ccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCC
Q 046397 261 --------------------------SCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGD 314 (901)
Q Consensus 261 --------------------------~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~ 314 (901)
............+.+++........++++|||++++..++.+++.|...+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---- 385 (494)
T 1wp9_A 310 AGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---- 385 (494)
T ss_dssp TTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT----
T ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC----
Confidence 00001111223344444444444678999999999999999999999863
Q ss_pred CCceEEEEecC--------CCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccc
Q 046397 315 PTRVLLLTCHG--------SMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLL 386 (901)
Q Consensus 315 ~~~~~v~~lhs--------~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~ 386 (901)
+.+..+|| +++..+|.++++.|++|..+|||||+++++|||+|++++||. ||++.
T Consensus 386 ---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~--------~d~~~------ 448 (494)
T 1wp9_A 386 ---IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------YEPVP------ 448 (494)
T ss_dssp ---CCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--------SSCCH------
T ss_pred ---CCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE--------eCCCC------
Confidence 33668899 999999999999999999999999999999999999999998 65543
Q ss_pred cccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 387 PSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 387 ~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
|.+.+.||+|||||.++|.||+|+++...+
T Consensus 449 ----~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 449 ----SAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp ----HHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred ----CHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 556788999999999999999999987654
No 40
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.98 E-value=2.3e-32 Score=321.70 Aligned_cols=305 Identities=19% Similarity=0.246 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 046397 11 YKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVG 90 (901)
Q Consensus 11 ~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vG 90 (901)
.++|.++++.+.+++++++.+|||+|||+++..+++.. . ..++|+.|+++|+.|+.+++.. ++.......|
T Consensus 27 r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~---g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~ 97 (523)
T 1oyw_A 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----N---GLTVVVSPLISLMKDQVDQLQA-NGVAAACLNS 97 (523)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----S---SEEEEECSCHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----C---CCEEEECChHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 56899999999999999999999999999877776632 1 2466677999999999998854 3332211111
Q ss_pred EEEe------cccccCCCceEEEEcHHHHHHHHhcC-CCCCCceEEEEecCcccCc---chhHHHHHHHHHHhhCCCceE
Q 046397 91 YKVR------LEGMKGRDTRLLFCTTGILLRRLLVD-RNLKGVTHVIVDEVHERGM---NEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 91 y~vr------~e~~~~~~t~Ii~~T~g~Llr~L~~~-~~l~~~~~IIIDE~HeR~~---~~d~ll~~lk~ll~~~~~~ki 160 (901)
.... .........+|+|+||+.|+.....+ ....++++|||||+|+.+- +.......+..+....|+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 177 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCE
Confidence 0000 01111245799999999986321111 1347899999999997431 122223345556667789999
Q ss_pred EEeccCCCHHH---HHhhhC-CCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhh
Q 046397 161 VLMSATLDAEL---FSSYFG-GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQI 236 (901)
Q Consensus 161 IlmSATl~~~~---f~~yf~-~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (901)
++||||++... +.++++ ..+.+.+.+...|.-.+.+...
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~------------------------------------- 220 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK------------------------------------- 220 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEEC-------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeC-------------------------------------
Confidence 99999998753 445554 3444444443333211111000
Q ss_pred HHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCC
Q 046397 237 ASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPT 316 (901)
Q Consensus 237 ~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~ 316 (901)
.+.+..++..+ ....++++||||+++++++.+++.|...+.
T Consensus 221 ---------------------------------~~~~~~l~~~l-~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~----- 261 (523)
T 1oyw_A 221 ---------------------------------FKPLDQLMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSKGI----- 261 (523)
T ss_dssp ---------------------------------SSHHHHHHHHH-HHTTTCCEEEECSSHHHHHHHHHHHHHTTC-----
T ss_pred ---------------------------------CCHHHHHHHHH-HhcCCCcEEEEeCCHHHHHHHHHHHHHCCC-----
Confidence 00011112222 233567999999999999999999988643
Q ss_pred ceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHH
Q 046397 317 RVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQ 396 (901)
Q Consensus 317 ~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 396 (901)
.+..+||+|+.++|.++++.|.+|+.+|||||+++++|||+|+|++||+ ||.+. |.++|.
T Consensus 262 --~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~~p~----------s~~~y~ 321 (523)
T 1oyw_A 262 --SAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPR----------NIESYY 321 (523)
T ss_dssp --CEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SSCCS----------SHHHHH
T ss_pred --CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------ECCCC----------CHHHHH
Confidence 3779999999999999999999999999999999999999999999999 55443 556788
Q ss_pred HHhhhcCCCC-CCceEEcCCcchhh
Q 046397 397 QRRGRAGRVQ-PGECYRLYPRCVYD 420 (901)
Q Consensus 397 QR~GRAGR~~-~G~c~~L~s~~~~~ 420 (901)
||+|||||.+ +|.|+.+|+..+..
T Consensus 322 Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 322 QETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp HHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred HHhccccCCCCCceEEEEeCHHHHH
Confidence 9999999995 89999999877654
No 41
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=7.1e-32 Score=333.82 Aligned_cols=390 Identities=15% Similarity=0.137 Sum_probs=193.2
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh---CCcc
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER---GEKL 85 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~---~~~~ 85 (901)
....+|.++++.+.+++++++++|||||||.++..++++.+.....+...+++|+.|+++|+.|+.+.+.+.+ +..+
T Consensus 248 ~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (797)
T 4a2q_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (797)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceE
Confidence 4678999999999999999999999999999999999887765433334567777799999999999997775 3333
Q ss_pred CcEeeEEEeccc--ccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-----CC
Q 046397 86 GESVGYKVRLEG--MKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-----RP 156 (901)
Q Consensus 86 g~~vGy~vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-----~~ 156 (901)
+...|....... .....++|+|+||++|.+.+.... .+.++++|||||||...-.. .+..++..++.. .+
T Consensus 328 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~~~ 406 (797)
T 4a2q_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQ 406 (797)
T ss_dssp EEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccCCC
Confidence 333332211100 011357899999999999887654 57789999999999754333 344444444443 56
Q ss_pred CceEEEeccCCCH----------HHHH---hhhCCCcEEeeCCc-c--------ccceEE-ecc----------------
Q 046397 157 ELRLVLMSATLDA----------ELFS---SYFGGATVINIPGF-T--------YPVRTH-FLE---------------- 197 (901)
Q Consensus 157 ~~kiIlmSATl~~----------~~f~---~yf~~~~~i~i~gr-~--------~pV~~~-~l~---------------- 197 (901)
..++|+||||+.. +.+. ..++ ...+..... . .|.... ..+
T Consensus 407 ~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~-~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (797)
T 4a2q_A 407 LPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 485 (797)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCeEEEEcCCccccccccHHHHHHHHHHHHHhcC-CcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHH
Confidence 7899999999942 1121 2222 222222111 0 011000 000
Q ss_pred -------chhhhcccccCCCCCCcch-hhHHHhHhhc-----ccc-hhhhhhh---------------------------
Q 046397 198 -------DILDMTGYRLTPYNQIDDY-GQEKMWKMSK-----QAP-RKRKSQI--------------------------- 236 (901)
Q Consensus 198 -------d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~-~~~~~~~--------------------------- 236 (901)
+++........+....... .........+ ... .......
T Consensus 486 ~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 565 (797)
T 4a2q_A 486 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARII 565 (797)
T ss_dssp HHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 0000000000000000000 0000000000 000 0000000
Q ss_pred --HHHHHHHHHhhcccccchh--------------hhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHH
Q 046397 237 --ASAVEDTLKAANFNEYSSQ--------------TRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDIN 300 (901)
Q Consensus 237 --~~~i~~~l~~~~~~~~~~~--------------~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~ 300 (901)
...+...........+... .................+..++........++++|||++++..++
T Consensus 566 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~ 645 (797)
T 4a2q_A 566 DALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS 645 (797)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHH
Confidence 0000000000000000000 000000000111122333444444344466799999999999999
Q ss_pred HHHHHHHhCccCCCC-----CceEEEEecCCCCHHHHHhhcCCCCC-CCeEEEEecchhhcccCCCCeEEEEeCCCcccc
Q 046397 301 SLNDKLQANRILGDP-----TRVLLLTCHGSMASSEQRLIFDEPES-GVRKIVLATNIAETSITINDVVFVIDCGKAKET 374 (901)
Q Consensus 301 ~l~~~L~~~~~~~~~-----~~~~v~~lhs~l~~~eq~~i~~~f~~-g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~ 374 (901)
.+++.|...+..... .......+||+|+..+|..+++.|++ |..+|||||+++++|||+|+|++||+
T Consensus 646 ~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~------- 718 (797)
T 4a2q_A 646 ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL------- 718 (797)
T ss_dssp HHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE-------
T ss_pred HHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE-------
Confidence 999999875321110 11234467999999999999999999 99999999999999999999999999
Q ss_pred ccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchh
Q 046397 375 SYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVY 419 (901)
Q Consensus 375 ~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~ 419 (901)
||++.+ ..+|.||+|| ||.++|.||.|+++...
T Consensus 719 -yd~p~s----------~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 719 -YEYSGN----------VTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp -ESCCSC----------HHHHHTC--------CCCEEEEECCHHH
T ss_pred -eCCCCC----------HHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 887654 4466699999 99999999999988654
No 42
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=6.8e-32 Score=309.09 Aligned_cols=298 Identities=17% Similarity=0.135 Sum_probs=196.5
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
....+++|.++++.+.+++++++++|||||||+++..+++... ..+. +++++.|+|+||.|+++++.+... .+
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~--~~lil~Pt~~L~~q~~~~~~~~~~--~~ 91 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGK--KSALVFPTVTLVKQTLERLQKLAD--EK 91 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTC--CEEEEESSHHHHHHHHHHHHHHCC--SS
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCC--EEEEEECCHHHHHHHHHHHHHHcc--CC
Confidence 4556899999999999999999999999999997766666543 2333 455566999999999999977533 33
Q ss_pred cEeeEEEeccc----------ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcc--------------cCcchh
Q 046397 87 ESVGYKVRLEG----------MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHE--------------RGMNED 142 (901)
Q Consensus 87 ~~vGy~vr~e~----------~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~He--------------R~~~~d 142 (901)
..++.-..... .....++|+|+||+.|++.+.. ..+.++++|||||||. .+...+
T Consensus 92 ~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 92 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp CCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred ceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHH
Confidence 33332211111 1123489999999999877653 4567899999999994 222222
Q ss_pred HHHHHHHHHH--------hhCCCceEEEeccCCCHH-----HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCC
Q 046397 143 FLLIVLKDLL--------SRRPELRLVLMSATLDAE-----LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTP 209 (901)
Q Consensus 143 ~ll~~lk~ll--------~~~~~~kiIlmSATl~~~-----~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~ 209 (901)
.+..+++.+- ...++.++++||||+.+. .+..+++ ..+.........+...|...
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~----------- 238 (414)
T 3oiy_A 171 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISS----------- 238 (414)
T ss_dssp HHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESS-----------
T ss_pred HHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeecc-----------
Confidence 2222222211 012678999999995322 2222222 00000000000111111100
Q ss_pred CCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcE
Q 046397 210 YNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAV 289 (901)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~i 289 (901)
-..+.+..++ .. .++++
T Consensus 239 ----------------------------------------------------------~~~~~l~~~l----~~-~~~~~ 255 (414)
T 3oiy_A 239 ----------------------------------------------------------RSKEKLVELL----EI-FRDGI 255 (414)
T ss_dssp ----------------------------------------------------------CCHHHHHHHH----HH-HCSSE
T ss_pred ----------------------------------------------------------CHHHHHHHHH----HH-cCCCE
Confidence 0001111122 22 24899
Q ss_pred EEEcCCHHHHHHHHHHHHhCccCCCCCceEEE-EecCCCCHHHHHhhcCCCCCCCeEEEEe----cchhhcccCCCC-eE
Q 046397 290 LVFMTGWDDINSLNDKLQANRILGDPTRVLLL-TCHGSMASSEQRLIFDEPESGVRKIVLA----TNIAETSITIND-VV 363 (901)
Q Consensus 290 LVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~-~lhs~l~~~eq~~i~~~f~~g~~kIIva----TniaetGIdIp~-V~ 363 (901)
||||+++.+++.+++.|...+. .+. .+||. +|+ ++.|++|+.+|||| |+++++|||+|+ |+
T Consensus 256 lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 256 LIFAQTEEEGKELYEYLKRFKF-------NVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC-------CEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred EEEECCHHHHHHHHHHHHHcCC-------ceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccC
Confidence 9999999999999999988643 355 78884 333 89999999999999 999999999999 99
Q ss_pred EEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC-----CCceEEcCCc
Q 046397 364 FVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ-----PGECYRLYPR 416 (901)
Q Consensus 364 ~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~-----~G~c~~L~s~ 416 (901)
+||+ ||.+.+ .|..+|.||+|||||.+ +|.|+.++..
T Consensus 323 ~VI~--------~~~p~~--------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 323 YVIF--------WGTPSG--------PDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp EEEE--------ESCCTT--------TCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred EEEE--------ECCCCC--------CCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 9999 555421 25667889999999985 7999999944
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=8.7e-31 Score=327.87 Aligned_cols=393 Identities=15% Similarity=0.126 Sum_probs=191.8
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh---CC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER---GE 83 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~---~~ 83 (901)
....+.+|.++++.+.+++++++++|||||||.++..++++.+.....+...+++|+.|+++|+.|+++.+...+ +.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 345678999999999999999999999999999999998876644332224467777799999999999987765 33
Q ss_pred ccCcEeeEEEeccc--ccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-----
Q 046397 84 KLGESVGYKVRLEG--MKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR----- 154 (901)
Q Consensus 84 ~~g~~vGy~vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~----- 154 (901)
.++...|....... ......+|+|+||++|.+.+.... .+.++++|||||||...-.. .+..++..++..
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~-~~~~i~~~~~~~~~~~~ 404 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 404 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC-HHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc-cHHHHHHHHHHHhhccC
Confidence 33333332110000 001246899999999999887654 47789999999999744332 344445444443
Q ss_pred CCCceEEEeccCCCH----------HHHH---hhhCCCcEEeeCCc---------cccceEE-ecc--------------
Q 046397 155 RPELRLVLMSATLDA----------ELFS---SYFGGATVINIPGF---------TYPVRTH-FLE-------------- 197 (901)
Q Consensus 155 ~~~~kiIlmSATl~~----------~~f~---~yf~~~~~i~i~gr---------~~pV~~~-~l~-------------- 197 (901)
.+..++++||||+.. +.+. ..++ ...+..... ..|.... ..+
T Consensus 405 ~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~-~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l 483 (936)
T 4a2w_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (936)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcC-CceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHH
Confidence 567899999999932 1111 1121 222222110 0011110 000
Q ss_pred ---------chhhhcccccCCCCCCcch-hhHHHhHhhc-----ccchh-hhh---------------------------
Q 046397 198 ---------DILDMTGYRLTPYNQIDDY-GQEKMWKMSK-----QAPRK-RKS--------------------------- 234 (901)
Q Consensus 198 ---------d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~-~~~--------------------------- 234 (901)
+.+........+....... .........+ ..+.. ...
T Consensus 484 ~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~ 563 (936)
T 4a2w_A 484 MSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (936)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 0000000000000000000 0000000000 00000 000
Q ss_pred --hhHHHHHHHHHhhcccccchhh--------------hhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHH
Q 046397 235 --QIASAVEDTLKAANFNEYSSQT--------------RESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDD 298 (901)
Q Consensus 235 --~~~~~i~~~l~~~~~~~~~~~~--------------~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~ 298 (901)
.....+...........+.... ................+..++........++++|||++++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ 643 (936)
T 4a2w_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (936)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHH
Confidence 0000000000000000000000 000000001111122233333333333567899999999999
Q ss_pred HHHHHHHHHhCccCCCC-----CceEEEEecCCCCHHHHHhhcCCCCC-CCeEEEEecchhhcccCCCCeEEEEeCCCcc
Q 046397 299 INSLNDKLQANRILGDP-----TRVLLLTCHGSMASSEQRLIFDEPES-GVRKIVLATNIAETSITINDVVFVIDCGKAK 372 (901)
Q Consensus 299 i~~l~~~L~~~~~~~~~-----~~~~v~~lhs~l~~~eq~~i~~~f~~-g~~kIIvaTniaetGIdIp~V~~VId~G~~k 372 (901)
++.+++.|...+..... .......+||+|+..+|.++++.|+. |..+|||||+++++|||+|+|++||+
T Consensus 644 ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----- 718 (936)
T 4a2w_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----- 718 (936)
T ss_dssp HHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE-----
T ss_pred HHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE-----
Confidence 99999999976321110 01224467999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcchhh
Q 046397 373 ETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420 (901)
Q Consensus 373 ~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~~~ 420 (901)
||++.+.. +|.||+|| ||.++|.||.|+++...+
T Consensus 719 ---yD~p~s~~----------~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 ---YEYSGNVT----------KMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp ---ESCCSCSH----------HHHCC--------CCCEEEEESCHHHH
T ss_pred ---eCCCCCHH----------HHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 88876555 55599999 999999999999886554
No 44
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=268.01 Aligned_cols=181 Identities=55% Similarity=0.910 Sum_probs=166.7
Q ss_pred hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397 2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER 81 (901)
Q Consensus 2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~ 81 (901)
++.|..+|++.+|+++++.+.++++++++|||||||||++.+++++.....+.+..+.++|++|+|+++.|++++++.++
T Consensus 54 ~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 54 LQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp HHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999988776655556789999999999999999999999
Q ss_pred CCccCcEeeEEEecccccC-CCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397 82 GEKLGESVGYKVRLEGMKG-RDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL 160 (901)
Q Consensus 82 ~~~~g~~vGy~vr~e~~~~-~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki 160 (901)
+..+|..+||.++++.... .+++|+|||||+|++.+.. .+.++++|||||+|+|+++.|+++..++.++..+++.++
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~ 211 (235)
T 3llm_A 134 GEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRI 211 (235)
T ss_dssp TCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEE
T ss_pred ccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeE
Confidence 9999999999999887765 5689999999999999876 489999999999999999999999999999999999999
Q ss_pred EEeccCCCHHHHHhhhCCCcEEee
Q 046397 161 VLMSATLDAELFSSYFGGATVINI 184 (901)
Q Consensus 161 IlmSATl~~~~f~~yf~~~~~i~i 184 (901)
|+||||++.+.|++||+++|++++
T Consensus 212 il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 212 VLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp EEEECSSCCHHHHHHTTSCCCEEC
T ss_pred EEEecCCCHHHHHHHcCCCCEEeC
Confidence 999999999999999999998864
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.96 E-value=6.3e-30 Score=310.76 Aligned_cols=298 Identities=19% Similarity=0.278 Sum_probs=201.5
Q ss_pred CcHHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 9 PAYKEKNRLLTAISQN------QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~------~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
....+|.++++.+.++ .+++++||||||||.++..++++.... +. .++++.|+++||.|+++++.+.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~--qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhh
Confidence 4678999999988765 588999999999999999999876532 22 466666999999999999988764
Q ss_pred CccCcEeeEEEecc----------cccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHH
Q 046397 83 EKLGESVGYKVRLE----------GMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLL 152 (901)
Q Consensus 83 ~~~g~~vGy~vr~e----------~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll 152 (901)
..|..++.-.... .......+|+|+|++.+.. +..+.++++|||||+|+.+.... ..+.
T Consensus 443 -~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~ 511 (780)
T 1gm5_A 443 -KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALM 511 (780)
T ss_dssp -CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCC
T ss_pred -hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHH
Confidence 2233333211111 1123458999999987754 44688999999999997443221 1122
Q ss_pred hhCCCceEEEeccCCCHHHHH-hhhCCCcEEeeC---CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhccc
Q 046397 153 SRRPELRLVLMSATLDAELFS-SYFGGATVINIP---GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA 228 (901)
Q Consensus 153 ~~~~~~kiIlmSATl~~~~f~-~yf~~~~~i~i~---gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (901)
...++.++++||||+.+..+. .++++..+..+. ....|+...+.++.
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----------------------------- 562 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMD----------------------------- 562 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSS-----------------------------
T ss_pred HhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccc-----------------------------
Confidence 233568999999998766555 445543332222 11223333221100
Q ss_pred chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHh-hcCCCcEEEEcCCHHH--------H
Q 046397 229 PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICE-KERPGAVLVFMTGWDD--------I 299 (901)
Q Consensus 229 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~-~~~~g~iLVFl~~~~~--------i 299 (901)
....++..+.. ...+++++||||..++ +
T Consensus 563 -------------------------------------------~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a 599 (780)
T 1gm5_A 563 -------------------------------------------RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSA 599 (780)
T ss_dssp -------------------------------------------THHHHHHHHHHHTTTSCCBCCBCCCC--------CHH
T ss_pred -------------------------------------------hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHH
Confidence 00001111111 1346789999997654 5
Q ss_pred HHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccC
Q 046397 300 NSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDAL 379 (901)
Q Consensus 300 ~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~ 379 (901)
+.+++.|....+ ..+.+..+||+|+.++|..+++.|++|+.+|||||+++++|||+|++++||. ||++
T Consensus 600 ~~l~~~L~~~~~----~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~ 667 (780)
T 1gm5_A 600 VEMYEYLSKEVF----PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPE 667 (780)
T ss_dssp HHHHHSGGGSCC-------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCS
T ss_pred HHHHHHHHhhhc----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCC
Confidence 566666654111 1245778999999999999999999999999999999999999999999998 6655
Q ss_pred CCccccccccccHhcHHHHhhhcCCC-CCCceEEcCC
Q 046397 380 NNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYP 415 (901)
Q Consensus 380 ~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s 415 (901)
. .+.+++.||+|||||. .+|.||.+++
T Consensus 668 r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 668 R---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp S---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred C---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 3 1345677999999997 6899999997
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=5e-29 Score=290.31 Aligned_cols=336 Identities=18% Similarity=0.155 Sum_probs=205.3
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+..+++|.++++.+.+++++++++|||+|||.++..++... +. .++|++|+++|+.|+++++.+ ++..
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~--~~Lvl~P~~~L~~Q~~~~~~~-~~~~-- 159 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-FGEE-- 159 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CS--CEEEEESSHHHHHHHHHHGGG-GCGG--
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEECCHHHHHHHHHHHHh-CCCc--
Confidence 456899999999999999999999999999999988887653 22 455555999999999999976 5433
Q ss_pred cEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 87 ESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 87 ~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
.++. +.+......+|+|+|++.+...+.. ...++++|||||+|+-. ... .+.++...+..++++||||
T Consensus 160 -~v~~---~~g~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~~~-~~~-----~~~~~~~~~~~~~l~lSAT 227 (472)
T 2fwr_A 160 -YVGE---FSGRIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLP-AES-----YVQIAQMSIAPFRLGLTAT 227 (472)
T ss_dssp -GEEE---BSSSCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGGTT-STT-----THHHHHTCCCSEEEEEESC
T ss_pred -ceEE---ECCCcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcCCC-ChH-----HHHHHHhcCCCeEEEEecC
Confidence 0331 1122234578999999999876532 12468999999999632 222 2334555677899999999
Q ss_pred CCHH-----HHHhhhCCCcEEeeC-----Cc-cccceE--Eeccc-hhhhcccc---------cCCCC----CCcchhhH
Q 046397 167 LDAE-----LFSSYFGGATVINIP-----GF-TYPVRT--HFLED-ILDMTGYR---------LTPYN----QIDDYGQE 219 (901)
Q Consensus 167 l~~~-----~f~~yf~~~~~i~i~-----gr-~~pV~~--~~l~d-~~~~~~~~---------~~~~~----~~~~~~~~ 219 (901)
+... .+..+++. .+.... +. ..+... ...+- ..+...|. +...+ ....+.
T Consensus 228 p~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 304 (472)
T 2fwr_A 228 FEREDGRHEILKEVVGG-KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFN-- 304 (472)
T ss_dssp CCCTTSGGGSHHHHTCC-EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSST--
T ss_pred ccCCCCHHHHHHHHhCC-eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHH--
Confidence 9521 34455542 111111 00 000000 00000 00000000 00000 000000
Q ss_pred HHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHH
Q 046397 220 KMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDI 299 (901)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i 299 (901)
.........+..............+. .........+..++....++++|||+++.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~ 362 (472)
T 2fwr_A 305 KIVMASGYDERAYEALRAWEEARRIA----------------------FNSKNKIRKLREILERHRKDKIIIFTRHNELV 362 (472)
T ss_dssp TTTTTTCCSSSSSTTTHHHHHHHHHH----------------------HSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHh----------------------hcChHHHHHHHHHHHhCCCCcEEEEECCHHHH
Confidence 00000000000000000000000000 00001112333444446688999999999999
Q ss_pred HHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccC
Q 046397 300 NSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDAL 379 (901)
Q Consensus 300 ~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~ 379 (901)
+.+++.|. +..+||+++..+|.++++.|++|..+|||||+++++|+|+|++++||. ||++
T Consensus 363 ~~l~~~l~------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--------~~~~ 422 (472)
T 2fwr_A 363 YRISKVFL------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MSGS 422 (472)
T ss_dssp HHHHHHTT------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------ECCS
T ss_pred HHHHHHhC------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--------ECCC
Confidence 99998874 226899999999999999999999999999999999999999999998 7665
Q ss_pred CCccccccccccHhcHHHHhhhcCCCCCC----ceEEcCCcchhh
Q 046397 380 NNTSCLLPSWISTVSAQQRRGRAGRVQPG----ECYRLYPRCVYD 420 (901)
Q Consensus 380 ~~~~~l~~~~iSka~~~QR~GRAGR~~~G----~c~~L~s~~~~~ 420 (901)
. |.+++.||+|||||.++| .+|.++++...+
T Consensus 423 ~----------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 423 G----------SAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp S----------CCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred C----------CHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 4 345667999999999877 456666655443
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=6.3e-28 Score=306.31 Aligned_cols=298 Identities=19% Similarity=0.237 Sum_probs=208.0
Q ss_pred cHHHHHHHHHHHHc----CC--eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC
Q 046397 10 AYKEKNRLLTAISQ----NQ--VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE 83 (901)
Q Consensus 10 i~~~q~~il~~i~~----~~--~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~ 83 (901)
...+|.++++.+.+ ++ +++++||||||||.++..+++.... .+. .++|+.||++||.|+++++.+.++.
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~--~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHK--QVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTC--EEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCC--eEEEEechHHHHHHHHHHHHHHhhc
Confidence 38899999998876 55 8999999999999988777765432 233 5666679999999999999877642
Q ss_pred ccCcEeeEEEeccc----------ccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh
Q 046397 84 KLGESVGYKVRLEG----------MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS 153 (901)
Q Consensus 84 ~~g~~vGy~vr~e~----------~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~ 153 (901)
.+..++.-.++.+ ......+|+|+|++.|. .+..+.++++|||||+|+.+... ...++ .
T Consensus 679 -~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~~~---~~~l~---~ 747 (1151)
T 2eyq_A 679 -WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGVRH---KERIK---A 747 (1151)
T ss_dssp -TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCHHH---HHHHH---H
T ss_pred -CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcChHH---HHHHH---H
Confidence 2333333222211 12245899999998653 34468899999999999743221 22222 2
Q ss_pred hCCCceEEEeccCCCHHHHHhhhCCCcEEee---C-CccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccc
Q 046397 154 RRPELRLVLMSATLDAELFSSYFGGATVINI---P-GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAP 229 (901)
Q Consensus 154 ~~~~~kiIlmSATl~~~~f~~yf~~~~~i~i---~-gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (901)
..++.++++||||+.+..+...+.+..-..+ + ....++..++.+.
T Consensus 748 l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~------------------------------- 796 (1151)
T 2eyq_A 748 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY------------------------------- 796 (1151)
T ss_dssp HHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEEC-------------------------------
T ss_pred hcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecC-------------------------------
Confidence 3467899999999977666555444322111 1 1112222221110
Q ss_pred hhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhC
Q 046397 230 RKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQAN 309 (901)
Q Consensus 230 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~ 309 (901)
.. . .+...++..+ ..+++++|||+++++++.+++.|.+.
T Consensus 797 --~~----~--------------------------------~i~~~il~~l---~~g~qvlvf~~~v~~~~~l~~~L~~~ 835 (1151)
T 2eyq_A 797 --DS----M--------------------------------VVREAILREI---LRGGQVYYLYNDVENIQKAAERLAEL 835 (1151)
T ss_dssp --CH----H--------------------------------HHHHHHHHHH---TTTCEEEEECCCSSCHHHHHHHHHHH
T ss_pred --CH----H--------------------------------HHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHh
Confidence 00 0 0011112222 34689999999999999999999875
Q ss_pred ccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCcccccccc
Q 046397 310 RILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSW 389 (901)
Q Consensus 310 ~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~ 389 (901)
. ....+..+||+|+..+|.++++.|.+|+.+|||||+++++|||+|++++||. +++..
T Consensus 836 ~-----p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~~~--------- 893 (1151)
T 2eyq_A 836 V-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADH--------- 893 (1151)
T ss_dssp C-----TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTTTS---------
T ss_pred C-----CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCCCC---------
Confidence 2 1244789999999999999999999999999999999999999999999996 44321
Q ss_pred ccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 390 ISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 390 iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
.+.+++.||+||+||. .+|.||.+++..
T Consensus 894 ~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 894 FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 1345678999999998 589999998754
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=2.3e-28 Score=308.39 Aligned_cols=269 Identities=17% Similarity=0.126 Sum_probs=177.3
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
...++.|.++++.+.++++++++||||||||+.+..+++... ..+. +++|+.|+|+||.|+++++.+ ++ ..+.
T Consensus 77 f~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~--~~Lil~PtreLa~Q~~~~l~~-l~-~~~i 149 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGK--KSALVFPTVTLVKQTLERLQK-LA-DEKV 149 (1104)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTTC--CEEEEESSHHHHHHHHHHHHT-TS-CTTS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCC--eEEEEechHHHHHHHHHHHHH-hh-CCCC
Confidence 356789999999999999999999999999996666666544 2333 455566999999999999977 44 3344
Q ss_pred EeeEEEecccc----------cCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcch---hHHHH-------H
Q 046397 88 SVGYKVRLEGM----------KGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNE---DFLLI-------V 147 (901)
Q Consensus 88 ~vGy~vr~e~~----------~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~---d~ll~-------~ 147 (901)
.++.-....+. ....++|+|+||+.|++.+.. ..+.++++|||||||+-.-.. |-++. .
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 44433322211 123489999999999887653 456789999999999511100 22222 1
Q ss_pred HHHHHhh------------CCCceEEEeccCCCHH-----HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCC
Q 046397 148 LKDLLSR------------RPELRLVLMSATLDAE-----LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPY 210 (901)
Q Consensus 148 lk~ll~~------------~~~~kiIlmSATl~~~-----~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~ 210 (901)
++.++.. .++.++++||||+.+. .+..+.. ..+.........+...|...
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~------------ 295 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISS------------ 295 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESC------------
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEec------------
Confidence 3333321 1578999999995332 2222221 00000000000111111100
Q ss_pred CCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEE
Q 046397 211 NQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVL 290 (901)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iL 290 (901)
-....+ ..+... .++++|
T Consensus 296 ---------------------------------------------------------~k~~~L----~~ll~~-~~~~~L 313 (1104)
T 4ddu_A 296 ---------------------------------------------------------RSKEKL----VELLEI-FRDGIL 313 (1104)
T ss_dssp ---------------------------------------------------------CCHHHH----HHHHHH-HCSSEE
T ss_pred ---------------------------------------------------------CHHHHH----HHHHHh-cCCCEE
Confidence 000111 111222 248999
Q ss_pred EEcCCHHHHHHHHHHHHhCccCCCCCceEEE-EecCCCCHHHHHhhcCCCCCCCeEEEEe----cchhhcccCCCC-eEE
Q 046397 291 VFMTGWDDINSLNDKLQANRILGDPTRVLLL-TCHGSMASSEQRLIFDEPESGVRKIVLA----TNIAETSITIND-VVF 364 (901)
Q Consensus 291 VFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~-~lhs~l~~~eq~~i~~~f~~g~~kIIva----TniaetGIdIp~-V~~ 364 (901)
|||+++++++.+++.|...+. .+. .+|| +|++ ++.|++|+.+|||| |+++++|||||+ |++
T Consensus 314 VF~~s~~~a~~l~~~L~~~g~-------~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~ 380 (1104)
T 4ddu_A 314 IFAQTEEEGKELYEYLKRFKF-------NVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKY 380 (1104)
T ss_dssp EEESSSHHHHHHHHHHHHTTC-------CEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCE
T ss_pred EEECcHHHHHHHHHHHHhCCC-------CeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCE
Confidence 999999999999999987643 355 8898 2555 99999999999999 999999999999 999
Q ss_pred EEeCCCcc
Q 046397 365 VIDCGKAK 372 (901)
Q Consensus 365 VId~G~~k 372 (901)
||++|.|+
T Consensus 381 VI~~d~P~ 388 (1104)
T 4ddu_A 381 VIFWGTPS 388 (1104)
T ss_dssp EEEESCCE
T ss_pred EEEECCCC
Confidence 99988887
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=7.3e-28 Score=283.25 Aligned_cols=330 Identities=11% Similarity=0.079 Sum_probs=201.6
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
..+.+|.++++.+.+++++++++|||+|||+++..++..... .++ .+++++.|+++|+.|+.+++... +...+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~---~~vlvl~P~~~L~~Q~~~~~~~~-~~~~~~~ 187 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYE---GKILIIVPTTALTTQMADDFVDY-RLFSHAM 187 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH-HCS---SEEEEEESSHHHHHHHHHHHHHT-TSSCGGG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh-CCC---CeEEEEECcHHHHHHHHHHHHHh-hcCCccc
Confidence 568999999999999999999999999999999877766543 222 25666669999999999999543 2222222
Q ss_pred eeEEEecccc---cCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEec
Q 046397 89 VGYKVRLEGM---KGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLMS 164 (901)
Q Consensus 89 vGy~vr~e~~---~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlmS 164 (901)
++.-...... .....+|+|+|++.|.+. ....+.++++|||||+|.-+ .. .+..++... +..++++||
T Consensus 188 v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~--~~----~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT--GK----SISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp EEECGGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCC--HH----HHHHHGGGCTTCCEEEEEE
T ss_pred eEEEecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCC--cc----cHHHHHHhcccCcEEEEEE
Confidence 2211111111 124689999999977653 11357789999999999732 22 234444444 567899999
Q ss_pred cCCCHH-----HHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHH
Q 046397 165 ATLDAE-----LFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASA 239 (901)
Q Consensus 165 ATl~~~-----~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (901)
||++.. .+..+|+. .++.++.... ++..++.. +..... .............. ......
T Consensus 260 ATp~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~------~~~~~~--~~~~~~~~~~~~~~-------~~~~~~ 322 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFGE-IFKPVTTSKL-MEDGQVTE------LKINSI--FLRYPDEFTTKLKG-------KTYQEE 322 (510)
T ss_dssp SCGGGCSSCHHHHHHHHCS-EECCCCCC----------C------CEEEEE--EEECCHHHHHHHTT-------CCHHHH
T ss_pred eCCCCCcccHHHhHHhhCC-eEEeeCHHHH-hhCCcCCC------ceEEEE--eecCChHHhccccc-------cchHHH
Confidence 999433 12334442 2222221100 00000000 000000 00000000000000 000000
Q ss_pred HHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceE
Q 046397 240 VEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVL 319 (901)
Q Consensus 240 i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~ 319 (901)
+..... .....+.+..++..... .....+|||++ .++++.+++.|.+.+. .
T Consensus 323 ~~~~~~--------------------~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~~~-------~ 373 (510)
T 2oca_A 323 IKIITG--------------------LSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNEYD-------K 373 (510)
T ss_dssp HHHHHT--------------------CHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTTCS-------S
T ss_pred HHHHhc--------------------cHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHcCC-------C
Confidence 000000 00011223333333332 23445666666 9999999999987632 3
Q ss_pred EEEecCCCCHHHHHhhcCCCCCCCeEEEEec-chhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHH
Q 046397 320 LLTCHGSMASSEQRLIFDEPESGVRKIVLAT-NIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQR 398 (901)
Q Consensus 320 v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaT-niaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 398 (901)
+..+||+++..+|.++++.|.+|..+||||| +++++|+|+|++++||. ||++.+ .+++.||
T Consensus 374 v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~~~~s----------~~~~~Q~ 435 (510)
T 2oca_A 374 VYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AHGVKS----------KIIVLQT 435 (510)
T ss_dssp EEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SSCCCS----------CCHHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eCCCCC----------HHHHHHH
Confidence 7789999999999999999999999999999 99999999999999998 666543 3466799
Q ss_pred hhhcCCCCCCc-eEEcCC
Q 046397 399 RGRAGRVQPGE-CYRLYP 415 (901)
Q Consensus 399 ~GRAGR~~~G~-c~~L~s 415 (901)
+|||||.++|. ++.+|+
T Consensus 436 ~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 436 IGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHTTTCCCCCCEEEE
T ss_pred HhcccccCCCCceEEEEE
Confidence 99999997764 667765
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=3.2e-28 Score=307.24 Aligned_cols=263 Identities=16% Similarity=0.123 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc----
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE---- 87 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~---- 87 (901)
++|.++++.+.++++++++||||||||+ +.++++..... .+ .+++|+.|+|+||.|+++++...... .+.
T Consensus 59 ~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~--~~~lil~PtreLa~Q~~~~l~~l~~~-~~i~~~~ 132 (1054)
T 1gku_B 59 AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KG--KRCYVIFPTSLLVIQAAETIRKYAEK-AGVGTEN 132 (1054)
T ss_dssp HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TS--CCEEEEESCHHHHHHHHHHHHHHHTT-TCCSGGG
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cC--CeEEEEeccHHHHHHHHHHHHHHHhh-cCCCccc
Confidence 9999999999999999999999999998 77777776643 23 34556669999999999999776532 121
Q ss_pred EeeEEEec----c-----cccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHH------
Q 046397 88 SVGYKVRL----E-----GMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLL------ 152 (901)
Q Consensus 88 ~vGy~vr~----e-----~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll------ 152 (901)
.++.-... + ..... ++|+|+|||+|++.+.. +.++++|||||||+-.-....+..+++.+-
T Consensus 133 ~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~ 208 (1054)
T 1gku_B 133 LIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 208 (1054)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETT
T ss_pred eEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhh
Confidence 22211111 0 11112 89999999999997764 779999999999962111122222222110
Q ss_pred --hhCCCceEEEeccCCCHH-HH-HhhhCCCcEEeeCCcccc---ceEEeccchhhhcccccCCCCCCcchhhHHHhHhh
Q 046397 153 --SRRPELRLVLMSATLDAE-LF-SSYFGGATVINIPGFTYP---VRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMS 225 (901)
Q Consensus 153 --~~~~~~kiIlmSATl~~~-~f-~~yf~~~~~i~i~gr~~p---V~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (901)
...+..+++++|||++.. .+ ..++.+...+.+.....+ +...+.+.
T Consensus 209 ~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~--------------------------- 261 (1054)
T 1gku_B 209 TKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVND--------------------------- 261 (1054)
T ss_dssp TTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESC---------------------------
T ss_pred hhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEech---------------------------
Confidence 002356789999998543 11 122222111222221111 11111100
Q ss_pred cccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHH
Q 046397 226 KQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDK 305 (901)
Q Consensus 226 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~ 305 (901)
-..+. +..+.... ++++||||+++.+++.+++.
T Consensus 262 ------------------------------------------~k~~~----L~~ll~~~-~~~~LVF~~t~~~a~~l~~~ 294 (1054)
T 1gku_B 262 ------------------------------------------ESIST----LSSILEKL-GTGGIIYARTGEEAEEIYES 294 (1054)
T ss_dssp ------------------------------------------CCTTT----THHHHTTS-CSCEEEEESSHHHHHHHHHT
T ss_pred ------------------------------------------hHHHH----HHHHHhhc-CCCEEEEEcCHHHHHHHHHH
Confidence 00011 11222222 57899999999999999999
Q ss_pred HHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEe----cchhhcccCCCCe-EEEEeCCCc
Q 046397 306 LQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLA----TNIAETSITINDV-VFVIDCGKA 371 (901)
Q Consensus 306 L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIva----TniaetGIdIp~V-~~VId~G~~ 371 (901)
|... +.+..+||++. .+++.|++|..+|||| ||++++|||+|+| ++||+.|.+
T Consensus 295 L~~~--------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 295 LKNK--------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp TTTS--------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred Hhhc--------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 8764 34779999984 5677788999999999 9999999999995 999998888
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=4.1e-26 Score=273.24 Aligned_cols=338 Identities=15% Similarity=0.151 Sum_probs=180.7
Q ss_pred CCcHHHHHHHHHHHHc-----CCeEEEEcCCCChHHHHHHHHHHHHHHhhc-----CCCeeEEEEecchHHHHHHHH-HH
Q 046397 8 LPAYKEKNRLLTAISQ-----NQVVIISGETGCGKTTQVPQFILESEITSV-----RGAVCSIICTQPRRISAMSVS-ER 76 (901)
Q Consensus 8 LPi~~~q~~il~~i~~-----~~~viI~~~TGsGKTtq~p~~ile~~~~~~-----~~~~~~IlvtqPrr~la~qva-~r 76 (901)
...+.+|.++++.+.+ ++.+++++|||||||.++..++.. ++..+ .....+++++.||++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~-l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWK-LWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH-HHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHH-HHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3578899999998865 577899999999999887665544 33333 002335666669999999988 44
Q ss_pred HHHHhCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhc-----CCCCCCceEEEEecCcccCcchhHHHHHHHHH
Q 046397 77 VASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLV-----DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDL 151 (901)
Q Consensus 77 va~e~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~-----~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~l 151 (901)
+. .++..++. + .........+|+|+|++.|...+.. ......+++|||||||. ....+ ...++.+
T Consensus 256 ~~-----~~~~~~~~-~-~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~-~~~~~--~~~~~~i 325 (590)
T 3h1t_A 256 FT-----PFGDARHK-I-EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHR-GSARD--NSNWREI 325 (590)
T ss_dssp CT-----TTCSSEEE-C-CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHH
T ss_pred HH-----hcchhhhh-h-hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcc-ccccc--hHHHHHH
Confidence 42 23322221 1 1222345679999999999876532 22456789999999995 22211 1334566
Q ss_pred HhhCCCceEEEeccCCCH---HHHHhhhCCCcEEeeC-------CccccceEEeccchhhhcccccCCCCCCcchhhHHH
Q 046397 152 LSRRPELRLVLMSATLDA---ELFSSYFGGATVINIP-------GFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKM 221 (901)
Q Consensus 152 l~~~~~~kiIlmSATl~~---~~f~~yf~~~~~i~i~-------gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 221 (901)
+...+..++|+||||+.. .....+|+.. +.... +...|.....+..-....++.... ...+.+.. ..
T Consensus 326 l~~~~~~~~l~lTATP~~~~~~~~~~~f~~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~ 402 (590)
T 3h1t_A 326 LEYFEPAFQIGMTATPLREDNRDTYRYFGNP-IYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSK-GDVDRFGR-EI 402 (590)
T ss_dssp HHHSTTSEEEEEESSCSCTTTHHHHHHSCSC-SEEECHHHHHHHTSSCCEEEEEEEETTCC-------------------
T ss_pred HHhCCcceEEEeccccccccchhHHHHcCCc-eEecCHHHHhhCCccCCcEEEEeeeeeecccccccc-cccccccc-cc
Confidence 666777899999999842 3566777642 22211 111122211111100000100000 00000000 00
Q ss_pred hHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHH-HHHHhhcCCCcEEEEcCCHHHHH
Q 046397 222 WKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVL-CYICEKERPGAVLVFMTGWDDIN 300 (901)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll-~~i~~~~~~g~iLVFl~~~~~i~ 300 (901)
. ......... +..+.. ......+...+ .++......+++||||+++++++
T Consensus 403 ---~--~~~~~~~~~----~~~~~~--------------------~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~ 453 (590)
T 3h1t_A 403 ---P--DGEYQTKDF----ERVIAL--------------------KARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHAD 453 (590)
T ss_dssp -----------CCSH----HHHHHH--------------------HHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHH
T ss_pred ---c--cccCCHHHh----hhHhcC--------------------hHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHH
Confidence 0 000000000 000000 00011122222 22333345689999999999999
Q ss_pred HHHHHHHhCccCC-CCCceEEEEecCCCCHHHHHhhcCCCCCCCeE---EEEecchhhcccCCCCeEEEEeCCCcccccc
Q 046397 301 SLNDKLQANRILG-DPTRVLLLTCHGSMASSEQRLIFDEPESGVRK---IVLATNIAETSITINDVVFVIDCGKAKETSY 376 (901)
Q Consensus 301 ~l~~~L~~~~~~~-~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~k---IIvaTniaetGIdIp~V~~VId~G~~k~~~y 376 (901)
.+++.|....... ....-.+..+||.++ ++|+.+++.|++|..+ |++||+++++|||+|+|++||. |
T Consensus 454 ~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~--------~ 524 (590)
T 3h1t_A 454 EMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL--------A 524 (590)
T ss_dssp HHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE--------E
T ss_pred HHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE--------E
Confidence 9999997643210 001112567899876 3689999999987765 8899999999999999999998 6
Q ss_pred ccCCCccccccccccHhcHHHHhhhcCCCCC
Q 046397 377 DALNNTSCLLPSWISTVSAQQRRGRAGRVQP 407 (901)
Q Consensus 377 d~~~~~~~l~~~~iSka~~~QR~GRAGR~~~ 407 (901)
+++. |...|.||+||+||.++
T Consensus 525 ~~~~----------s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 525 RVVN----------SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp SCCC----------CHHHHHHHHTTSCCCBG
T ss_pred ecCC----------ChHHHHHHHhhhcccCc
Confidence 6654 45567799999999875
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=1.3e-24 Score=259.30 Aligned_cols=345 Identities=18% Similarity=0.183 Sum_probs=202.0
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
+-.+..|...+..+.+++ |..++||+|||.++.++++...+ .|..+.|+ .|+|+||.|+++.+..... .+|-
T Consensus 82 ~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVl--tptreLA~qd~e~~~~l~~-~lgl 153 (844)
T 1tf5_A 82 MFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVV--TVNEYLASRDAEQMGKIFE-FLGL 153 (844)
T ss_dssp CCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEE--ESSHHHHHHHHHHHHHHHH-HTTC
T ss_pred CCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEE--eCCHHHHHHHHHHHHHHHh-hcCC
Confidence 355788999999999988 89999999999999999885443 23344444 4999999999887755431 2333
Q ss_pred EeeEEEecc----cccCCCceEEEEcHHHH-HHHHhcC-------CCCCCceEEEEecCcccCcchh-------------
Q 046397 88 SVGYKVRLE----GMKGRDTRLLFCTTGIL-LRRLLVD-------RNLKGVTHVIVDEVHERGMNED------------- 142 (901)
Q Consensus 88 ~vGy~vr~e----~~~~~~t~Ii~~T~g~L-lr~L~~~-------~~l~~~~~IIIDE~HeR~~~~d------------- 142 (901)
.||.-+... ......++|+|+|||.| +..|... ..+.++.++||||||..-++..
T Consensus 154 ~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~ 233 (844)
T 1tf5_A 154 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKS 233 (844)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECC
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccc
Confidence 333221111 11112479999999999 4444322 2578899999999995211110
Q ss_pred -HHHHHHHHHHhhCC----------CceEE-----------------EeccCCCH--HHH-----Hh-hhC-CCc-----
Q 046397 143 -FLLIVLKDLLSRRP----------ELRLV-----------------LMSATLDA--ELF-----SS-YFG-GAT----- 180 (901)
Q Consensus 143 -~ll~~lk~ll~~~~----------~~kiI-----------------lmSATl~~--~~f-----~~-yf~-~~~----- 180 (901)
-+...+..++...+ +-++. ++|||... ..+ +. +|. +..
T Consensus 234 ~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~d 313 (844)
T 1tf5_A 234 TKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVED 313 (844)
T ss_dssp CHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEET
T ss_pred hhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEec
Confidence 13334555665543 33455 78999642 111 11 222 111
Q ss_pred --EEee--------CCcccc--------------c--------eEE---e---ccchhhhcccccCCCCCCcchhhHHHh
Q 046397 181 --VINI--------PGFTYP--------------V--------RTH---F---LEDILDMTGYRLTPYNQIDDYGQEKMW 222 (901)
Q Consensus 181 --~i~i--------~gr~~p--------------V--------~~~---~---l~d~~~~~~~~~~~~~~~~~~~~~~~~ 222 (901)
++-+ +|+.|+ + .+. | .+.+..++|-..+. ...++
T Consensus 314 g~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te--------~~e~~ 385 (844)
T 1tf5_A 314 GQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE--------EEEFR 385 (844)
T ss_dssp TEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG--------HHHHH
T ss_pred CeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh--------HHHHH
Confidence 1111 111110 0 000 1 12333333321110 00000
Q ss_pred HhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCC-CC---CCchhhHHHHHHHHHhh-cCCCcEEEEcCCHH
Q 046397 223 KMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWN-PD---CIGFNLIEYVLCYICEK-ERPGAVLVFMTGWD 297 (901)
Q Consensus 223 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~---~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~~ 297 (901)
.... ...-.. + +.......+ ++ ....+....++..+... ..+.++||||.+++
T Consensus 386 ~iY~--------------------l~vv~I-P-tn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~ 443 (844)
T 1tf5_A 386 NIYN--------------------MQVVTI-P-TNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 443 (844)
T ss_dssp HHHC--------------------CCEEEC-C-CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred HHhC--------------------CceEEe-c-CCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHH
Confidence 0000 000000 0 000000000 00 00011122223333221 23568999999999
Q ss_pred HHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC--------CeEEEEeCC
Q 046397 298 DINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN--------DVVFVIDCG 369 (901)
Q Consensus 298 ~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp--------~V~~VId~G 369 (901)
.++.+++.|...++. ...+||.+...++..+.+.+++| .|+||||+|++|+||+ ++.+||+
T Consensus 444 ~se~Ls~~L~~~gi~-------~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn-- 512 (844)
T 1tf5_A 444 TSELISKLLKNKGIP-------HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG-- 512 (844)
T ss_dssp HHHHHHHHHHTTTCC-------CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE--
T ss_pred HHHHHHHHHHHCCCC-------EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE--
Confidence 999999999987654 34789999988888787777776 5999999999999999 8999999
Q ss_pred CccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 370 KAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 370 ~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
||.+. |...|.||+||+||. .||.++.+++.+
T Consensus 513 ------~d~p~----------s~r~y~hr~GRTGRqG~~G~s~~~vs~e 545 (844)
T 1tf5_A 513 ------TERHE----------SRRIDNQLRGRSGRQGDPGITQFYLSME 545 (844)
T ss_dssp ------SSCCS----------SHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred ------ecCCC----------CHHHHHhhcCccccCCCCCeEEEEecHH
Confidence 55544 555677999999999 689998887754
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=1.1e-23 Score=250.79 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=89.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCC---
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIND--- 361 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~--- 361 (901)
.+.++|||+.+++.++.+++.|...++.. ..+||.+...++..+.+.+++| .|+||||+|++|+||+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi~~-------~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn 510 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGIKH-------NVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGS 510 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTCCC-------EECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCC
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCE-------EEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCc
Confidence 45689999999999999999999886653 3789999888888888999988 59999999999999997
Q ss_pred -----------------------------e-----EEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-C
Q 046397 362 -----------------------------V-----VFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-Q 406 (901)
Q Consensus 362 -----------------------------V-----~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~ 406 (901)
| .+||+ ||.+. |+..+.||+||+||. .
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te~pe----------s~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 511 WQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TERHE----------SRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp HHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SSCCS----------SHHHHHHHHTTSSGGGC
T ss_pred hHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------ccCCC----------CHHHHHhhccccccCCC
Confidence 4 69999 44433 556778999999999 6
Q ss_pred CCceEEcCCcc
Q 046397 407 PGECYRLYPRC 417 (901)
Q Consensus 407 ~G~c~~L~s~~ 417 (901)
||.+..+.+.+
T Consensus 573 ~G~s~~fls~e 583 (853)
T 2fsf_A 573 AGSSRFYLSME 583 (853)
T ss_dssp CEEEEEEEETT
T ss_pred CeeEEEEeccc
Confidence 89887777654
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.89 E-value=2.3e-22 Score=239.53 Aligned_cols=344 Identities=19% Similarity=0.171 Sum_probs=200.4
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
+-.+..|...+..+.+++ |..++||+|||.++.++++...+. |..+.|+ .|++.||.|.++.+.... ..+|-
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~Vv--TpTreLA~Qdae~m~~l~-~~lGL 181 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIV--TVNDYLAKRDSEWMGRVH-RFLGL 181 (922)
T ss_dssp CCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEE--ESSHHHHHHHHHHHHHHH-HHTTC
T ss_pred CCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEE--eCCHHHHHHHHHHHHHHH-hhcCC
Confidence 345778888888888887 999999999999999888655442 3334444 499999999988775442 22344
Q ss_pred EeeEEEeccc----ccCCCceEEEEcHHHH-HHHHhcC-------CCCCCceEEEEecCcccCcc---------------
Q 046397 88 SVGYKVRLEG----MKGRDTRLLFCTTGIL-LRRLLVD-------RNLKGVTHVIVDEVHERGMN--------------- 140 (901)
Q Consensus 88 ~vGy~vr~e~----~~~~~t~Ii~~T~g~L-lr~L~~~-------~~l~~~~~IIIDE~HeR~~~--------------- 140 (901)
.||.-+...+ .....++|+|+||+.| +..|... ..+.++.++||||||..-.+
T Consensus 182 sv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~ 261 (922)
T 1nkt_A 182 QVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGA 261 (922)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCC
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcc
Confidence 4442221110 1112479999999999 5555432 35788999999999952111
Q ss_pred hhHHHHHHHHHHhhCC----------CceEE-----------------EeccCCCH--HHH-----H-hhhC-C------
Q 046397 141 EDFLLIVLKDLLSRRP----------ELRLV-----------------LMSATLDA--ELF-----S-SYFG-G------ 178 (901)
Q Consensus 141 ~d~ll~~lk~ll~~~~----------~~kiI-----------------lmSATl~~--~~f-----~-~yf~-~------ 178 (901)
++++ ..+..++...+ +-++. +.|||... ..+ + .+|. +
T Consensus 262 ~~~y-~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~ 340 (922)
T 1nkt_A 262 SNWY-TEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVR 340 (922)
T ss_dssp HHHH-HHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEEC
T ss_pred hhHH-HHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeee
Confidence 2333 33445555443 45566 78999642 111 1 1232 1
Q ss_pred -CcEEeeC---Ccccc-----------------ceE----Eecc------------chhhhcccccCCCCCCcchhhHHH
Q 046397 179 -ATVINIP---GFTYP-----------------VRT----HFLE------------DILDMTGYRLTPYNQIDDYGQEKM 221 (901)
Q Consensus 179 -~~~i~i~---gr~~p-----------------V~~----~~l~------------d~~~~~~~~~~~~~~~~~~~~~~~ 221 (901)
..++.|. |+.-+ |++ .-+. .+..++|-. ......+
T Consensus 341 dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa--------~te~~Ef 412 (922)
T 1nkt_A 341 DGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA--------QTEAAEL 412 (922)
T ss_dssp SSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC--------GGGHHHH
T ss_pred cCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc--------hhHHHHH
Confidence 2222222 11111 000 0000 000111100 0000111
Q ss_pred hHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCC-CC---CCchhhHHHHHHHHHhh-cCCCcEEEEcCCH
Q 046397 222 WKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWN-PD---CIGFNLIEYVLCYICEK-ERPGAVLVFMTGW 296 (901)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~-~~---~i~~~li~~ll~~i~~~-~~~g~iLVFl~~~ 296 (901)
+.... .+.-.. .+.......+ ++ ....+....++..+... ..+.++|||+.++
T Consensus 413 ~~iY~--------------------l~vv~I--Ptn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Si 470 (922)
T 1nkt_A 413 HEIYK--------------------LGVVSI--PTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSV 470 (922)
T ss_dssp HHHHC--------------------CEEEEC--CCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHhC--------------------CCeEEe--CCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 11000 000000 0000000000 00 00111222233333322 2456899999999
Q ss_pred HHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCe--------------
Q 046397 297 DDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDV-------------- 362 (901)
Q Consensus 297 ~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V-------------- 362 (901)
+.++.+++.|...++.. ..+||.....++..+.+.+++| .|+||||+|++|+||+.+
T Consensus 471 e~sE~Ls~~L~~~Gi~~-------~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~ 541 (922)
T 1nkt_A 471 ERSEYLSRQFTKRRIPH-------NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRER 541 (922)
T ss_dssp HHHHHHHHHHHHTTCCC-------EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCE-------EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhc
Confidence 99999999999986653 3789999888888888899888 699999999999999975
Q ss_pred --------------------------------------EEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCC
Q 046397 363 --------------------------------------VFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGR 404 (901)
Q Consensus 363 --------------------------------------~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR 404 (901)
.+||+ ||.+. |+..+.||+||+||
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te~pe----------s~riy~qr~GRTGR 603 (922)
T 1nkt_A 542 GLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TERHE----------SRRIDNQLRGRSGR 603 (922)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CSCCS----------SHHHHHHHHHTSSG
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------ccCCC----------CHHHHHHHhccccc
Confidence 69999 44433 56677899999999
Q ss_pred C-CCCceEEcCCcc
Q 046397 405 V-QPGECYRLYPRC 417 (901)
Q Consensus 405 ~-~~G~c~~L~s~~ 417 (901)
. .||.+..+.+.+
T Consensus 604 qGdpG~s~fflSle 617 (922)
T 1nkt_A 604 QGDPGESRFYLSLG 617 (922)
T ss_dssp GGCCEEEEEEEETT
T ss_pred CCCCeeEEEEechh
Confidence 9 589887776643
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.89 E-value=1.2e-22 Score=254.58 Aligned_cols=378 Identities=14% Similarity=0.093 Sum_probs=205.9
Q ss_pred CCcHHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 8 LPAYKEKNRLLTAISQ--NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 8 LPi~~~q~~il~~i~~--~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
...++||.+++..+.. +..++++++||+|||.++..++.+.. ..+... +++++.|+ .++.|+.+.+.+.++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~-~~g~~~--rvLIVvP~-sLl~Qw~~E~~~~f~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL-LSGAAE--RVLIIVPE-TLQHQWLVEMLRRFNLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHH-HTSSCC--CEEEECCT-TTHHHHHHHHHHHSCCCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH-HhCCCC--eEEEEeCH-HHHHHHHHHHHHHhCCCE
Confidence 4578999999988776 45899999999999988877766544 333333 35555599 999999999987776544
Q ss_pred CcEeeEEE----ecccccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcc---hhHHHHHHHHHHhhCC
Q 046397 86 GESVGYKV----RLEGMKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMN---EDFLLIVLKDLLSRRP 156 (901)
Q Consensus 86 g~~vGy~v----r~e~~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~---~d~ll~~lk~ll~~~~ 156 (901)
....|-.. ..........+|+++|++.+.+...... ...++++|||||+|+-.-. .......++.+.. .
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~ 305 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--H 305 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--T
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--c
Confidence 32211100 0001122356899999998865311100 2457899999999963211 1112233444322 3
Q ss_pred CceEEEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccch------hhhcccccCCCCCCcchhhHHHhHhhc-ccc
Q 046397 157 ELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDI------LDMTGYRLTPYNQIDDYGQEKMWKMSK-QAP 229 (901)
Q Consensus 157 ~~kiIlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 229 (901)
..++++||||+-.....++|.-...+ -++. +.-...|.+.. ...... ..............+..... ...
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L-~p~~-~~~~~~f~~~~~~~~~i~~~~~~-l~~~~~~~~~~~~~L~~~l~~~~~ 382 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLL-DPNR-FHDFAQFVEEQKNYCPVADAVAM-LLAGNKLSNDELNMLGEMIGEQDI 382 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHH-CTTT-CSSTHHHHHHHHHHHHHHHHHHT-TTTSCCCCGGGTTSSTTTTCTTCS
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhc-Cccc-cCCHHHHHHHHHhHHHHHHHHHH-HhccCCCCHHHHHHHHHHhcchhh
Confidence 34699999998332111111100000 0000 00000000000 000000 00000000000000000000 000
Q ss_pred h-----------hhhhhhHHHHHHHHHhhc------------ccccchh-------------------------------
Q 046397 230 R-----------KRKSQIASAVEDTLKAAN------------FNEYSSQ------------------------------- 255 (901)
Q Consensus 230 ~-----------~~~~~~~~~i~~~l~~~~------------~~~~~~~------------------------------- 255 (901)
. .........+...+.... ...+...
T Consensus 383 ~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (968)
T 3dmq_A 383 EPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAED 462 (968)
T ss_dssp STTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGG
T ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHH
Confidence 0 000000111111111100 0000000
Q ss_pred ----------hhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecC
Q 046397 256 ----------TRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHG 325 (901)
Q Consensus 256 ----------~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs 325 (901)
....+...........-....+..++....++++||||+++..++.+++.|.... .+.+..+||
T Consensus 463 ~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~------g~~~~~lhG 536 (968)
T 3dmq_A 463 RARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE------GIRAAVFHE 536 (968)
T ss_dssp GTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT------CCCEEEECT
T ss_pred HHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc------CCcEEEEeC
Confidence 0000000000112222334445555555678999999999999999999998531 234778999
Q ss_pred CCCHHHHHhhcCCCCCCC--eEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcC
Q 046397 326 SMASSEQRLIFDEPESGV--RKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAG 403 (901)
Q Consensus 326 ~l~~~eq~~i~~~f~~g~--~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAG 403 (901)
+|+..+|.++++.|++|. .+|||||+++++|+|+|++++||. ||++.+ .+.+.||+||+|
T Consensus 537 ~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~--------~d~p~~----------~~~~~Q~~GR~~ 598 (968)
T 3dmq_A 537 GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM--------FDLPFN----------PDLLEQRIGRLD 598 (968)
T ss_dssp TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC--------SSCCSS----------HHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE--------ecCCCC----------HHHHHHHhhccc
Confidence 999999999999999998 999999999999999999999998 777654 446669999999
Q ss_pred CCC-CC--ceEEcCCcch
Q 046397 404 RVQ-PG--ECYRLYPRCV 418 (901)
Q Consensus 404 R~~-~G--~c~~L~s~~~ 418 (901)
|.+ .| ..|.++.+..
T Consensus 599 R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 599 RIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp CSSSCSCCEEEEEEETTS
T ss_pred cCCCCceEEEEEecCCCh
Confidence 984 34 3455555443
No 56
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.88 E-value=2.6e-23 Score=215.78 Aligned_cols=174 Identities=19% Similarity=0.279 Sum_probs=143.6
Q ss_pred HHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhh
Q 046397 275 YVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAE 354 (901)
Q Consensus 275 ~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniae 354 (901)
..+..++....++++||||+++.+++.+++.|...+ +.+.++||+|+..+|..+++.|++|.++|||||++++
T Consensus 20 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 20 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT-------CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 345555566678999999999999999999998753 3477999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcch--------------h
Q 046397 355 TSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCV--------------Y 419 (901)
Q Consensus 355 tGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~--------------~ 419 (901)
+|||+|+|++||+ ||.+. |.++|.||+|||||. ++|.||.+|+... +
T Consensus 93 ~Gidi~~v~~Vi~--------~~~p~----------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 93 RGLDIPQVDLVVH--------YRLPD----------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp CSSSCCCBSEEEE--------SSCCS----------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred cCCCCccCcEEEE--------CCCCc----------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 9999999999999 54433 667888999999999 4899999999775 3
Q ss_pred hhcccCCCCcccccCccchhhhhhccCCC---CHHHHhhhhcCCChHHHHHHHHHHH
Q 046397 420 DAFAEYQLPEILRTPLQSLCLQIKSLRLG---TIAGFLSRALQSPELLAVQNAIEYL 473 (901)
Q Consensus 420 ~~l~~~~~PEi~r~~L~~~~L~~k~l~~~---~~~~fl~~~l~pP~~~~v~~al~~L 473 (901)
..+.....|||.+..+..++++++.+..+ ...+++..++++|+++++..|+..|
T Consensus 155 ~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 155 KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 33455566788888899999999887654 3445566778889999999998766
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=2.4e-21 Score=241.45 Aligned_cols=330 Identities=12% Similarity=0.071 Sum_probs=191.9
Q ss_pred CcHHHHHHHHHHHHc--------------CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHH
Q 046397 9 PAYKEKNRLLTAISQ--------------NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVS 74 (901)
Q Consensus 9 Pi~~~q~~il~~i~~--------------~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva 74 (901)
....+|.++++.+.+ ++..+|+++||||||.++ .+++..+.. .+...+++|+.||++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--~~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--LDFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--CTTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--cCCCceEEEEeCcHHHHHHHH
Confidence 356788888888754 367899999999999886 445543321 222346777779999999998
Q ss_pred HHHHHHhCCccCcEeeEEE-ec-ccccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccCcchhHHHHHHH
Q 046397 75 ERVASERGEKLGESVGYKV-RL-EGMKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERGMNEDFLLIVLK 149 (901)
Q Consensus 75 ~rva~e~~~~~g~~vGy~v-r~-e~~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~~~~d~ll~~lk 149 (901)
+.+.......+.. +... .+ ........+|+|+|++.|...+.... .+..+.+||+||||+ +...+ ..+
T Consensus 348 ~~f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr-s~~~~----~~~ 420 (1038)
T 2w00_A 348 KEYQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR-SQFGE----AQK 420 (1038)
T ss_dssp HHHHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT-THHHH----HHH
T ss_pred HHHHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccch-hcchH----HHH
Confidence 8886533222211 1110 00 01112457999999999998765432 456789999999994 43333 244
Q ss_pred HHHhhCCCceEEEeccCCCH-------HHHHhhhCCCcEEee-------CCccccceEEeccchhhhcccccCCCCCCcc
Q 046397 150 DLLSRRPELRLVLMSATLDA-------ELFSSYFGGATVINI-------PGFTYPVRTHFLEDILDMTGYRLTPYNQIDD 215 (901)
Q Consensus 150 ~ll~~~~~~kiIlmSATl~~-------~~f~~yf~~~~~i~i-------~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~ 215 (901)
.+....|+.++++||||+.. .....+|++. +... .|..-|+...|..- . ..
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~y~~v---------~-----~~ 485 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVDYNDV---------R-----PQ 485 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEEECCC---------C-----GG
T ss_pred HHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEEEEec---------c-----ch
Confidence 55566788899999999842 2455677642 1111 13333444333210 0 00
Q ss_pred hhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhc-------CCCc
Q 046397 216 YGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKE-------RPGA 288 (901)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~-------~~g~ 288 (901)
+... .. ... +......... ..+ ..+..+ ..+...++.+..... .+++
T Consensus 486 ~~~~---~~--e~d-----------~~~~~~i~~~-------~~l--~~~~ri-~~I~~~Il~~~~~~~~~~~~~~~g~k 539 (1038)
T 2w00_A 486 FKSL---ET--ETD-----------EKKLSAAENQ-------QAF--LHPMRI-QEITQYILNNFRQKTHRTFPGSKGFN 539 (1038)
T ss_dssp GHHH---HT--CCC-----------HHHHHHTCST-------TTT--TCHHHH-HHHHHHHHHHHHHHTTCSSSSCCCCE
T ss_pred hhhc---cc--ccc-----------HHHHHHHHHH-------HHh--cCHHHH-HHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 0000 00 000 0000000000 000 000000 011222333332221 3468
Q ss_pred EEEEcCCHHHHHHHHHHHHhCcc-----CCCCCceEE-EEecCC----------C----------CHH------------
Q 046397 289 VLVFMTGWDDINSLNDKLQANRI-----LGDPTRVLL-LTCHGS----------M----------ASS------------ 330 (901)
Q Consensus 289 iLVFl~~~~~i~~l~~~L~~~~~-----~~~~~~~~v-~~lhs~----------l----------~~~------------ 330 (901)
+||||+++.++..+++.|..... ........+ ..+|++ + +..
T Consensus 540 amVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dy 619 (1038)
T 2w00_A 540 AMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREY 619 (1038)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 99999999999999999987531 011111223 345542 2 221
Q ss_pred -----------------HHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHh
Q 046397 331 -----------------EQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTV 393 (901)
Q Consensus 331 -----------------eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 393 (901)
+|..+.+.|++|..+|||+|+++.||+|+|.+.+++ +|.+. +..
T Consensus 620 n~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly---------lDkpl----------~~~ 680 (1038)
T 2w00_A 620 NSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF---------VDKNL----------RYH 680 (1038)
T ss_dssp HHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE---------EESCC----------CHH
T ss_pred HHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE---------EccCC----------Ccc
Confidence 367788889999999999999999999999996544 55544 344
Q ss_pred cHHHHhhhcCCCCCC
Q 046397 394 SAQQRRGRAGRVQPG 408 (901)
Q Consensus 394 ~~~QR~GRAGR~~~G 408 (901)
.+.||+||+||..++
T Consensus 681 ~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 681 GLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTTCCCCCT
T ss_pred ceeehhhccCcCCCC
Confidence 667999999999764
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.86 E-value=6e-21 Score=223.70 Aligned_cols=367 Identities=14% Similarity=0.093 Sum_probs=192.4
Q ss_pred CcHHHHHHHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 9 PAYKEKNRLLTAI----SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 9 Pi~~~q~~il~~i----~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
.+++||.+.++.+ ..+..++++.+||+|||.++..++... ...+....+.|+| |+ .++.|+.+.+.+....
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~-~~~~~~~~~LIv~--P~-~l~~qw~~e~~~~~~~- 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENELTPSLVIC--PL-SVLKNWEEELSKFAPH- 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH-HHTTCCSSEEEEE--CS-TTHHHHHHHHHHHCTT-
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCCCCEEEEc--cH-HHHHHHHHHHHHHCCC-
Confidence 3788999998876 467889999999999998877666543 3333334445555 95 5778888888765421
Q ss_pred cCcEee-EEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEe
Q 046397 85 LGESVG-YKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLM 163 (901)
Q Consensus 85 ~g~~vG-y~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlm 163 (901)
. .+. |.-..........+|+++|++.+.+... .....+++||+||+|.-.-..... ...+...+..+.+++
T Consensus 112 ~--~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~----~~~l~~l~~~~~l~L 183 (500)
T 1z63_A 112 L--RFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKI----FKAVKELKSKYRIAL 183 (500)
T ss_dssp S--CEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHH----HHHHHTSCEEEEEEE
T ss_pred c--eEEEEecCchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHH----HHHHHhhccCcEEEE
Confidence 1 111 1000011112346899999999876432 123468999999999621111111 222233345678999
Q ss_pred ccCCCHHHHHhhh------CCCcEEeeC----CccccceEE------eccchhhhccc-----------ccCCCC-----
Q 046397 164 SATLDAELFSSYF------GGATVINIP----GFTYPVRTH------FLEDILDMTGY-----------RLTPYN----- 211 (901)
Q Consensus 164 SATl~~~~f~~yf------~~~~~i~i~----gr~~pV~~~------~l~d~~~~~~~-----------~~~~~~----- 211 (901)
|||+-.+...++| ...+.-... ....|+... .+...+...-+ .+++..
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 9998332222211 110000000 000000000 00000000000 000000
Q ss_pred -CCcchhhHHHhHhhc-----cc----chhhhhhhHHHHHHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHH
Q 046397 212 -QIDDYGQEKMWKMSK-----QA----PRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYIC 281 (901)
Q Consensus 212 -~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~ 281 (901)
...+ .+...+.... .. .......+...+.. +...... +.....-............+.+++....
T Consensus 264 ~~l~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-lr~~~~~---p~l~~~~~~~~~~s~K~~~l~~~l~~~~ 338 (500)
T 1z63_A 264 CNLTP-EQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLK-LKQIVDH---PALLKGGEQSVRRSGKMIRTMEIIEEAL 338 (500)
T ss_dssp ECCCH-HHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHH-HHHHTTC---THHHHCSCCCSTTCHHHHHHHHHHHHHH
T ss_pred cCCCH-HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH-HHHHhCC---HHHhcCccchhhcchhHHHHHHHHHHHH
Confidence 0000 0011111000 00 00000000000000 0000000 0000000000000111122223333322
Q ss_pred hhcCCCcEEEEcCCHHHHHHHHHHHHhC-ccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC-CeE-EEEecchhhcccC
Q 046397 282 EKERPGAVLVFMTGWDDINSLNDKLQAN-RILGDPTRVLLLTCHGSMASSEQRLIFDEPESG-VRK-IVLATNIAETSIT 358 (901)
Q Consensus 282 ~~~~~g~iLVFl~~~~~i~~l~~~L~~~-~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g-~~k-IIvaTniaetGId 358 (901)
..+.++|||+.....+..+.+.|... +.. +..+||+++..+|.++++.|++| ..+ +|+||+++++|+|
T Consensus 339 --~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~-------~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 339 --DEGDKIAIFTQFVDMGKIIRNIIEKELNTE-------VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp --TTTCCEEEECSCHHHHHHHHHHHHHHHTCC-------CCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred --ccCCcEEEEEehHHHHHHHHHHHHHhhCCC-------eEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 35679999999999999999999864 322 44789999999999999999887 444 7999999999999
Q ss_pred CCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCC---CceEEcCCcchhh
Q 046397 359 INDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQP---GECYRLYPRCVYD 420 (901)
Q Consensus 359 Ip~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~---G~c~~L~s~~~~~ 420 (901)
+|++++||. ||++.+...+. ||+||++|.+. ..+|+|+++...+
T Consensus 410 l~~~~~vi~--------~d~~~~~~~~~----------Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 410 LTSANRVIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp CTTCSEEEE--------SSCCSCC---C----------HHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred hhhCCEEEE--------eCCCCCcchHH----------HHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 999999998 88877766666 99999999853 3568888776554
No 59
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.86 E-value=1.6e-22 Score=220.18 Aligned_cols=179 Identities=19% Similarity=0.249 Sum_probs=145.4
Q ss_pred HHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhh
Q 046397 275 YVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAE 354 (901)
Q Consensus 275 ~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniae 354 (901)
..+..++....++++||||+++++++.+++.|...+ +.+.++||+|++.+|..+++.|++|.++||||||+++
T Consensus 17 ~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g-------~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~ 89 (300)
T 3i32_A 17 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89 (300)
T ss_dssp HHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT-------CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTT
T ss_pred HHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC-------CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhh
Confidence 344555555568999999999999999999998753 3477999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcch--------------h
Q 046397 355 TSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCV--------------Y 419 (901)
Q Consensus 355 tGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~--------------~ 419 (901)
+|||||+|++||+ ||.+. |.++|.||+|||||. ++|.||.+|+... +
T Consensus 90 ~Gidi~~v~~VI~--------~d~p~----------s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 90 RGLDIPQVDLVVH--------YRMPD----------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CSTTCCCCSEEEE--------SSCCS----------STTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred cCccccceeEEEE--------cCCCC----------CHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 9999999999999 54443 456778999999999 5899999998775 3
Q ss_pred hhcccCCCCcccccCccchhhhhhccCCCCHHH---HhhhhcCCChHHHHHHHHHHHHHcCC
Q 046397 420 DAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAG---FLSRALQSPELLAVQNAIEYLKIIGA 478 (901)
Q Consensus 420 ~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~---fl~~~l~pP~~~~v~~al~~L~~~ga 478 (901)
..+.....|||.+..+..++++++.++.+++.. ++.+++++|+.+.+..|+..|.....
T Consensus 152 ~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 152 KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred eEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 345556678899999999999998876554443 34566788999999999999976654
No 60
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=223.80 Aligned_cols=111 Identities=23% Similarity=0.231 Sum_probs=94.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCC---eEEEEecchhhcccCCCC
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGV---RKIVLATNIAETSITIND 361 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~---~kIIvaTniaetGIdIp~ 361 (901)
.+.++|||+.....+..+.+.|...++ .+..+||+++..+|.++++.|..+. ..+|+||.++++|||++.
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~-------~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGI-------NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTC-------CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 457999999999999999999987643 2558999999999999999998754 359999999999999999
Q ss_pred eEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcchhh
Q 046397 362 VVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCVYD 420 (901)
Q Consensus 362 V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~~~ 420 (901)
+++||. ||++.+.. ...||.||++|.+ +..+|+|+++...+
T Consensus 644 a~~VI~--------~D~~wnp~----------~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 644 ADTVVI--------FDSDWNPQ----------ADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp CCEEEE--------SSCCSCSH----------HHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred cceEEE--------ecCCCChh----------hHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 999998 88876555 4459999999974 56789999887665
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=7.6e-18 Score=202.96 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=93.5
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCe---EEEEecchhhcccCCC
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVR---KIVLATNIAETSITIN 360 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~---kIIvaTniaetGIdIp 360 (901)
..+.++|||+.....++.+.+.|...++ .+..+||+++.++|.++++.|.+|.. .+|+||.++++|+|++
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~ 486 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRY-------LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLI 486 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTC-------CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCT
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHCCC-------CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccc
Confidence 3568999999999999999999987643 36689999999999999999988754 5899999999999999
Q ss_pred CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCC---CceEEcCCcchhh
Q 046397 361 DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQP---GECYRLYPRCVYD 420 (901)
Q Consensus 361 ~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~---G~c~~L~s~~~~~ 420 (901)
++++||. ||++.+. +.+.|++||++|.+. ..+|+|++....+
T Consensus 487 ~a~~Vi~--------~d~~wnp----------~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 487 GANRLVM--------FDPDWNP----------ANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp TEEEEEE--------CSCCSSH----------HHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred cCCEEEE--------ECCCCCc----------cHHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 9999998 8776544 456699999999853 4678888776543
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.79 E-value=9e-19 Score=182.62 Aligned_cols=177 Identities=20% Similarity=0.262 Sum_probs=119.7
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCC---cc
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGE---KL 85 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~---~~ 85 (901)
..+.+|.++++.+.+++++++++|||||||+++..++++.+..... ..+++++.|+++|+.|+++++...... .+
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 113 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK--APQALMLAPTRELALQIQKVVMALAFHMDIKV 113 (224)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCC--SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCE
T ss_pred CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCC--CceEEEEECCHHHHHHHHHHHHHHhcccCceE
Confidence 4688999999999999999999999999999999988887643322 346777779999999999988765422 22
Q ss_pred CcEeeEEEecc-cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEE
Q 046397 86 GESVGYKVRLE-GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVL 162 (901)
Q Consensus 86 g~~vGy~vr~e-~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIl 162 (901)
+...|.....+ ......++|+|+||+.|++.+.... .+.++++||+||||.- ...++. ..+..++. ..++.++++
T Consensus 114 ~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~~-~~l~~i~~~~~~~~~~i~ 191 (224)
T 1qde_A 114 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM-LSSGFK-EQIYQIFTLLPPTTQVVL 191 (224)
T ss_dssp EEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-HHTTCH-HHHHHHHHHSCTTCEEEE
T ss_pred EEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH-hhhhhH-HHHHHHHHhCCccCeEEE
Confidence 22222111111 1111348999999999999887654 6888999999999952 122222 22333433 346789999
Q ss_pred eccCCCHH---HHHhhhCCCcEEeeCCccc
Q 046397 163 MSATLDAE---LFSSYFGGATVINIPGFTY 189 (901)
Q Consensus 163 mSATl~~~---~f~~yf~~~~~i~i~gr~~ 189 (901)
||||++.+ .+..|++++..+.+++..+
T Consensus 192 lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~ 221 (224)
T 1qde_A 192 LSATMPNDVLEVTTKFMRNPVRILVKKDEL 221 (224)
T ss_dssp EESSCCHHHHHHHHHHCSSCEEEC------
T ss_pred EEeecCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 99999774 4556777776676665443
No 63
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=185.49 Aligned_cols=172 Identities=20% Similarity=0.237 Sum_probs=122.0
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
...+.+|.++++.+.+++++++++|||||||+++.+++++.+..... ..+++|+.|+|+|+.|+++++..... ..+.
T Consensus 64 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~--~~~~lil~Ptr~L~~q~~~~~~~~~~-~~~~ 140 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ--RLFALVLTPTRELAFQISEQFEALGS-SIGV 140 (249)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC--SSCEEEECSSHHHHHHHHHHHHHHHG-GGTC
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC--CceEEEEeCCHHHHHHHHHHHHHHhc-cCCe
Confidence 35789999999999999999999999999999999999988765433 34567777999999999998866532 2222
Q ss_pred EeeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCc
Q 046397 88 SVGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPEL 158 (901)
Q Consensus 88 ~vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~ 158 (901)
.++.-..... .....++|+|+||+.|++.+.... .+.++++|||||||. -.+.++... +..++.. .++.
T Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~-l~~~~~~~~-l~~i~~~~~~~~ 218 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR-ILNMDFETE-VDKILKVIPRDR 218 (249)
T ss_dssp CEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH-HHHTTCHHH-HHHHHHSSCSSS
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh-hhccChHHH-HHHHHHhCCCCC
Confidence 2222111110 112467999999999999887643 688999999999994 233344333 3344443 4578
Q ss_pred eEEEeccCCCHH---HHHhhhCCCcEEee
Q 046397 159 RLVLMSATLDAE---LFSSYFGGATVINI 184 (901)
Q Consensus 159 kiIlmSATl~~~---~f~~yf~~~~~i~i 184 (901)
++++||||++.+ ....|+.++..+.+
T Consensus 219 ~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 219 KTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred eEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999765 23456655544443
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=1.8e-18 Score=177.73 Aligned_cols=166 Identities=16% Similarity=0.202 Sum_probs=118.5
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
..+++|.++++.+.+++++++++|||||||+++..++++....... ..+++++.|+++|+.|+++++........+..
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 102 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKD--NIQAMVIVPTRELALQVSQICIQVSKHMGGAK 102 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSC--SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCC
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCC--CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 4678999999999999999999999999999999888877543222 34566667999999999999876653321333
Q ss_pred eeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceE
Q 046397 89 VGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRL 160 (901)
Q Consensus 89 vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~ki 160 (901)
++....... ......+|+|+||+.|.+.+.... .+.++++||+||||+- ...++ ...+..++...+ +.++
T Consensus 103 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~-~~~~~-~~~l~~i~~~~~~~~~~ 180 (206)
T 1vec_A 103 VMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL-LSQDF-VQIMEDIILTLPKNRQI 180 (206)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHH-TSTTT-HHHHHHHHHHSCTTCEE
T ss_pred EEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHh-HhhCc-HHHHHHHHHhCCccceE
Confidence 332211111 112467899999999999887655 6889999999999962 22233 334455555444 7899
Q ss_pred EEeccCCCHHH---HHhhhCC
Q 046397 161 VLMSATLDAEL---FSSYFGG 178 (901)
Q Consensus 161 IlmSATl~~~~---f~~yf~~ 178 (901)
++||||++.+. +..|+.+
T Consensus 181 l~~SAT~~~~~~~~~~~~l~~ 201 (206)
T 1vec_A 181 LLYSATFPLSVQKFMNSHLEK 201 (206)
T ss_dssp EEEESCCCHHHHHHHHHHCSS
T ss_pred EEEEeeCCHHHHHHHHHHcCC
Confidence 99999997652 3445544
No 65
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=181.61 Aligned_cols=170 Identities=21% Similarity=0.199 Sum_probs=114.4
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhh----cCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITS----VRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~----~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
..+.+|.++++.+.+++++++++|||||||+++..+++..+... ......+++++.|+|+||.|+++++.......
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 121 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG 121 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999988888765321 11223456777799999999999997764221
Q ss_pred c--CcEeeEEEecc--cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCce
Q 046397 85 L--GESVGYKVRLE--GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELR 159 (901)
Q Consensus 85 ~--g~~vGy~vr~e--~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~k 159 (901)
+ ....|-....+ .....+++|+|+||+.|++.+..+. .+.++++|||||||.- .+.++...+.+.+....++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~-~~~~~~~~~~~i~~~~~~~~~ 200 (228)
T 3iuy_A 122 LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM-LDMEFEPQIRKILLDVRPDRQ 200 (228)
T ss_dssp CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHH-HHTTCHHHHHHHHHHSCSSCE
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHH-hccchHHHHHHHHHhCCcCCe
Confidence 1 11111110000 0112357999999999999887665 6889999999999942 222233222222333456889
Q ss_pred EEEeccCCCHH---HHHhhhCCC
Q 046397 160 LVLMSATLDAE---LFSSYFGGA 179 (901)
Q Consensus 160 iIlmSATl~~~---~f~~yf~~~ 179 (901)
+++||||++.+ ....|+.++
T Consensus 201 ~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 201 TVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp EEEEESCCCHHHHHHHHTTCSSC
T ss_pred EEEEEeeCCHHHHHHHHHHCCCC
Confidence 99999999764 333455544
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.77 E-value=1e-18 Score=181.74 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=120.7
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc---
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL--- 85 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~--- 85 (901)
..+++|.++++.+.+++++++++|||||||+++..++++.+..... ..+++++.|+|+|+.|+++++.+......
T Consensus 26 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 103 (219)
T 1q0u_A 26 KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERA--EVQAVITAPTRELATQIYHETLKITKFCPKDR 103 (219)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcC--CceEEEEcCcHHHHHHHHHHHHHHhhhccccc
Confidence 4688999999999999999999999999999999999887643222 34566667999999999998876653211
Q ss_pred CcEeeEEEecc------cccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CC
Q 046397 86 GESVGYKVRLE------GMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PE 157 (901)
Q Consensus 86 g~~vGy~vr~e------~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~ 157 (901)
+..++.-.... .....+.+|+|+||+.|.+.+.... .+.++++|||||||.- ...-+...+..++... ++
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~--~~~~~~~~l~~i~~~~~~~ 181 (219)
T 1q0u_A 104 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM--LDMGFITDVDQIAARMPKD 181 (219)
T ss_dssp CCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH--HHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH--hhhChHHHHHHHHHhCCcc
Confidence 22222111110 1112357899999999999887654 5788999999999952 2111223344455544 47
Q ss_pred ceEEEeccCCCHH---HHHhhhCCCcEEeeC
Q 046397 158 LRLVLMSATLDAE---LFSSYFGGATVINIP 185 (901)
Q Consensus 158 ~kiIlmSATl~~~---~f~~yf~~~~~i~i~ 185 (901)
.++++||||++.+ .+..|+.++..+.+.
T Consensus 182 ~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 182 LQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp CEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred cEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 8999999999764 345666665444443
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=180.34 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=122.4
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC--CCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR--GAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~--~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
-..+++|.++++.+.+++++++++|||||||+++..++++.+..... ....+++|+.|+|+|+.|+++++..... ..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~ 124 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK-NH 124 (236)
T ss_dssp CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-TS
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC-CC
Confidence 35688999999999999999999999999999999999887754211 1234577777999999999998866542 22
Q ss_pred CcEeeEEEecc-----cccCCCceEEEEcHHHHHHHHhcC--CCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CC
Q 046397 86 GESVGYKVRLE-----GMKGRDTRLLFCTTGILLRRLLVD--RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PE 157 (901)
Q Consensus 86 g~~vGy~vr~e-----~~~~~~t~Ii~~T~g~Llr~L~~~--~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~ 157 (901)
+..++.-.... .....+++|+|+||+.|++.+... ..+.++++|||||||.- .+.++. ..+..++... ++
T Consensus 125 ~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~-~~~~~~-~~~~~i~~~~~~~ 202 (236)
T 2pl3_A 125 DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI-LDMGFA-DTMNAVIENLPKK 202 (236)
T ss_dssp SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHH-HHTTTH-HHHHHHHHTSCTT
T ss_pred CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHH-hcCCcH-HHHHHHHHhCCCC
Confidence 32332211111 111135799999999999988765 36789999999999941 222222 2344444443 47
Q ss_pred ceEEEeccCCCHH--HH-HhhhCCCcEEeeCC
Q 046397 158 LRLVLMSATLDAE--LF-SSYFGGATVINIPG 186 (901)
Q Consensus 158 ~kiIlmSATl~~~--~f-~~yf~~~~~i~i~g 186 (901)
.++++||||++.+ .+ ..|+.++..+.+.+
T Consensus 203 ~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 203 RQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp SEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred CeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 8899999999765 33 35566666666554
No 68
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.77 E-value=1.4e-18 Score=182.29 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+.+|.++++.+.+++++++++|||||||+++..++++.+..... ..+++++.|+|+|+.|+++++........+..+
T Consensus 47 ~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 124 (230)
T 2oxc_A 47 PSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENL--STQILILAPTREIAVQIHSVITAIGIKMEGLEC 124 (230)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCC--CceEEEEeCCHHHHHHHHHHHHHHhcccCCceE
Confidence 678999999999999999999999999999999998887654332 345667779999999999999765432223333
Q ss_pred eEEEec-----ccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEE
Q 046397 90 GYKVRL-----EGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVL 162 (901)
Q Consensus 90 Gy~vr~-----e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIl 162 (901)
+.-... ......+.+|+|+||+.|++.+.... .+.++++|||||||.- .....+...++.++...+ +.++++
T Consensus 125 ~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~-~~~~~~~~~~~~i~~~~~~~~~~l~ 203 (230)
T 2oxc_A 125 HVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL-LEEGSFQEQINWIYSSLPASKQMLA 203 (230)
T ss_dssp EEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH-HSTTSSHHHHHHHHHHSCSSCEEEE
T ss_pred EEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh-hcCcchHHHHHHHHHhCCCCCeEEE
Confidence 221111 11112357999999999999887654 5788999999999952 111112333444555444 789999
Q ss_pred eccCCCHH---HHHhhhCCCcEEee
Q 046397 163 MSATLDAE---LFSSYFGGATVINI 184 (901)
Q Consensus 163 mSATl~~~---~f~~yf~~~~~i~i 184 (901)
||||++.+ .+..||+++..+.+
T Consensus 204 lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 204 VSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999765 34566666555443
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.77 E-value=2.1e-18 Score=181.83 Aligned_cols=170 Identities=16% Similarity=0.245 Sum_probs=116.2
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+++|.++++.+.+++++++++|||||||+++.+++++.+..... ..+++|+.|+|+|+.|+++++..... ..+..+
T Consensus 53 ~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~ 129 (237)
T 3bor_A 53 PSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFK--ETQALVLAPTRELAQQIQKVILALGD-YMGATC 129 (237)
T ss_dssp CCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHTT-TTTCCE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCC--CceEEEEECcHHHHHHHHHHHHHHhh-hcCceE
Confidence 678999999999999999999999999999999999887643222 34567777999999999998876542 222222
Q ss_pred eEEE-------ecccccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceE
Q 046397 90 GYKV-------RLEGMKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRL 160 (901)
Q Consensus 90 Gy~v-------r~e~~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~ki 160 (901)
+... .........++|+|+||+.|++.+.... .+.++++||+||||.. ....+. ..+..++. ..++.++
T Consensus 130 ~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~-~~~~~~-~~l~~i~~~~~~~~~~ 207 (237)
T 3bor_A 130 HACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM-LSRGFK-DQIYEIFQKLNTSIQV 207 (237)
T ss_dssp EEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHH-HHTTCH-HHHHHHHHHSCTTCEE
T ss_pred EEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHh-hccCcH-HHHHHHHHhCCCCCeE
Confidence 2111 1111122337999999999999887654 6788999999999952 112222 22333333 3457899
Q ss_pred EEeccCCCHH---HHHhhhCCCcEEee
Q 046397 161 VLMSATLDAE---LFSSYFGGATVINI 184 (901)
Q Consensus 161 IlmSATl~~~---~f~~yf~~~~~i~i 184 (901)
|+||||++.+ ....|+.++..+.+
T Consensus 208 i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 208 VLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred EEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999764 34456655444433
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.77 E-value=5.8e-18 Score=179.13 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=122.5
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
..+.+|.++++.+.+++++++++|||||||+++..++++.+... .....+++++.|+|+|+.|+++++.+... ..+..
T Consensus 51 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~ 128 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRALIISPTRELASQIHRELIKISE-GTGFR 128 (245)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEEEECSSHHHHHHHHHHHHHHTT-TSCCC
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEEEEeCCHHHHHHHHHHHHHHhc-ccCce
Confidence 36889999999999999999999999999999999988876422 22334567777999999999998866543 22222
Q ss_pred eeEEE-------ecccccCCCceEEEEcHHHHHHHHhcCC---CCCCceEEEEecCcccCcc--hhHHHHHHHHHHhh-C
Q 046397 89 VGYKV-------RLEGMKGRDTRLLFCTTGILLRRLLVDR---NLKGVTHVIVDEVHERGMN--EDFLLIVLKDLLSR-R 155 (901)
Q Consensus 89 vGy~v-------r~e~~~~~~t~Ii~~T~g~Llr~L~~~~---~l~~~~~IIIDE~HeR~~~--~d~ll~~lk~ll~~-~ 155 (901)
++... ........+++|+|+||+.|...+...+ .+.++++|||||||+..-. ..+...+.+.+... .
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~ 208 (245)
T 3dkp_A 129 IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS 208 (245)
T ss_dssp EECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC
T ss_pred EEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC
Confidence 22111 1122234568999999999999987763 6889999999999963111 23333333332222 3
Q ss_pred CCceEEEeccCCCHH---HHHhhhCCCcEEeeCC
Q 046397 156 PELRLVLMSATLDAE---LFSSYFGGATVINIPG 186 (901)
Q Consensus 156 ~~~kiIlmSATl~~~---~f~~yf~~~~~i~i~g 186 (901)
++.++++||||++.+ ....|++++..+.+.+
T Consensus 209 ~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 209 HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 578999999999764 3345666666666654
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.77 E-value=5.7e-18 Score=197.74 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=86.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCC----
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN---- 360 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp---- 360 (901)
.+.++|||+++++.++.+++.|...++.. ..+||+....++..+.+.+++| .|+||||+|++|+||+
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~-------~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~ 543 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPH-------QVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPG 543 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCC-------EEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCE-------EEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcc
Confidence 45789999999999999999999876543 3789997666666666666666 5999999999999998
Q ss_pred ----CeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcch
Q 046397 361 ----DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCV 418 (901)
Q Consensus 361 ----~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~ 418 (901)
++.+||+ |+.+. |...+.||+||+||. .||.++.+++.++
T Consensus 544 V~~~GglhVIn--------te~Pe----------s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 544 VAELGGLCIIG--------TERHE----------SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TTTTTSCEEEE--------SSCCS----------SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred hhhcCCCEEEe--------cCCCC----------CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 7779999 54443 455677999999999 5899988876543
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=5.8e-18 Score=174.03 Aligned_cols=170 Identities=24% Similarity=0.200 Sum_probs=118.6
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-CCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-RGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
..+++|.++++.+.+++++++.+|||||||+++..++++.+.... .+...+++++.|+++++.|+++++...... +
T Consensus 23 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~-- 99 (207)
T 2gxq_A 23 TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH-L-- 99 (207)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT-S--
T ss_pred CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc-c--
Confidence 568899999999999999999999999999999999888764311 123346777779999999999999776543 1
Q ss_pred EeeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCce
Q 046397 88 SVGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELR 159 (901)
Q Consensus 88 ~vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~k 159 (901)
.++.-..... .....++|+|+||+.+++.+.... .+.++++||+||||.- ....+...+..++.. .++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~--~~~~~~~~~~~i~~~~~~~~~ 177 (207)
T 2gxq_A 100 KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM--LSMGFEEEVEALLSATPPSRQ 177 (207)
T ss_dssp CEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH--HHTTCHHHHHHHHHTSCTTSE
T ss_pred eEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh--hccchHHHHHHHHHhCCccCe
Confidence 1111110100 001357899999999999887654 6889999999999952 111122334444443 35789
Q ss_pred EEEeccCCCHH--HH-HhhhCCCcEEe
Q 046397 160 LVLMSATLDAE--LF-SSYFGGATVIN 183 (901)
Q Consensus 160 iIlmSATl~~~--~f-~~yf~~~~~i~ 183 (901)
+|+||||++.+ .+ ..|++++..+.
T Consensus 178 ~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 178 TLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp EEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 99999999764 33 45555544443
No 73
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=186.14 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=121.7
Q ss_pred cHHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 10 AYKEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 10 i~~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
.+.+|.++++.+..+ +++++++|||||||+++.+++++.+.....+ +.++|+.|+|+||.|+++.+........+.
T Consensus 115 pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~--~~~lil~PtreLa~Q~~~~~~~l~~~~~~~ 192 (300)
T 3fmo_B 115 PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY--PQCLCLSPTYELALQTGKVIEQMGKFYPEL 192 (300)
T ss_dssp CCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCC--ceEEEEcCcHHHHHHHHHHHHHHHhhCCCc
Confidence 467799999999987 9999999999999999999999877543333 345666699999999998886664432233
Q ss_pred EeeEEEeccc---ccCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCceEE
Q 046397 88 SVGYKVRLEG---MKGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPELRLV 161 (901)
Q Consensus 88 ~vGy~vr~e~---~~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~kiI 161 (901)
.+++.+.... ......+|+|+|||.|++.+.... .+.++++|||||||.. .+...+...+..++.. .++.|+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l-~~~~~~~~~~~~i~~~~~~~~q~i 271 (300)
T 3fmo_B 193 KLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM-IATQGHQDQSIRIQRMLPRNCQML 271 (300)
T ss_dssp CEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH-HHSTTHHHHHHHHHTTSCTTCEEE
T ss_pred EEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH-hhccCcHHHHHHHHHhCCCCCEEE
Confidence 3444332222 122457899999999999987643 5789999999999952 2212233344444443 4578999
Q ss_pred EeccCCCHH--HHH-hhhCCCcEEeeC
Q 046397 162 LMSATLDAE--LFS-SYFGGATVINIP 185 (901)
Q Consensus 162 lmSATl~~~--~f~-~yf~~~~~i~i~ 185 (901)
+||||++.+ .|. .|+.++..+.+.
T Consensus 272 ~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 272 LFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999999765 333 455555555543
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.75 E-value=1.1e-16 Score=192.96 Aligned_cols=114 Identities=21% Similarity=0.175 Sum_probs=98.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEE
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVF 364 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~ 364 (901)
.++++|||++++..++.+++.|...++ .+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~l 510 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------RARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSL 510 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------CceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCE
Confidence 467999999999999999999998753 3567999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcch
Q 046397 365 VIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCV 418 (901)
Q Consensus 365 VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~ 418 (901)
||+++..+. ..+.|..+|.||+|||||.++|.|+.+++...
T Consensus 511 VI~~d~d~~-------------G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 511 VAILDADKE-------------GFLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp EEETTTTSC-------------SGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred EEEeCCccc-------------CCCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 999443321 11346778999999999999999999987643
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.75 E-value=9.5e-18 Score=174.42 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+++|.++++.+.+++++++++|||||||+++..++++..... ....+++++.|+++|+.|+++++.+......+..+
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 114 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCE
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceE
Confidence 6789999999999999999999999999999999988765321 22335777779999999999988766432213333
Q ss_pred eEEEeccc-------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceE
Q 046397 90 GYKVRLEG-------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRL 160 (901)
Q Consensus 90 Gy~vr~e~-------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~ki 160 (901)
+.-..... .....++|+|+||+.|++.+.... .+.++++||+||||...-..++ ...+..++... ++.++
T Consensus 115 ~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~-~~~~~~i~~~~~~~~~~ 193 (220)
T 1t6n_A 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM-RRDVQEIFRMTPHEKQV 193 (220)
T ss_dssp EEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHH-HHHHHHHHHTSCSSSEE
T ss_pred EEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCc-HHHHHHHHHhCCCcCeE
Confidence 32111100 111246999999999999887655 6889999999999963212233 33445555544 47899
Q ss_pred EEeccCCCHH---HHHhhhCCCcEE
Q 046397 161 VLMSATLDAE---LFSSYFGGATVI 182 (901)
Q Consensus 161 IlmSATl~~~---~f~~yf~~~~~i 182 (901)
|+||||++.+ ....|+.++..+
T Consensus 194 i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 194 MMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp EEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred EEEEeecCHHHHHHHHHHcCCCeEE
Confidence 9999999653 344566655444
No 76
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.75 E-value=4e-18 Score=180.21 Aligned_cols=173 Identities=19% Similarity=0.158 Sum_probs=119.5
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc---CCCeeEEEEecchHHHHHHHHHHHHHHhCCccC
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV---RGAVCSIICTQPRRISAMSVSERVASERGEKLG 86 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~---~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g 86 (901)
.+++|.++++.+.+++++++++|||||||+++..+++..+.... .+...+++|+.|+|+|+.|+++.+..... ..+
T Consensus 52 ~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~-~~~ 130 (242)
T 3fe2_A 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR-ACR 130 (242)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh-hcC
Confidence 67899999999999999999999999999999999988765321 12234566667999999999888765432 112
Q ss_pred cEeeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-CCCc
Q 046397 87 ESVGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR-RPEL 158 (901)
Q Consensus 87 ~~vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~-~~~~ 158 (901)
..++.-..... ....+++|+|+||+.|++.+.... .+.++++|||||||.- .+..+ ...+..++.. .++.
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l-~~~~~-~~~~~~i~~~~~~~~ 208 (242)
T 3fe2_A 131 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM-LDMGF-EPQIRKIVDQIRPDR 208 (242)
T ss_dssp CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHH-HHTTC-HHHHHHHHTTSCSSC
T ss_pred ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHH-hhhCc-HHHHHHHHHhCCccc
Confidence 22221111100 011247899999999999887665 6889999999999952 22222 2334444443 4678
Q ss_pred eEEEeccCCCHH---HHHhhhCCCcEEeeC
Q 046397 159 RLVLMSATLDAE---LFSSYFGGATVINIP 185 (901)
Q Consensus 159 kiIlmSATl~~~---~f~~yf~~~~~i~i~ 185 (901)
++++||||++.+ ....|+.++-.+.+.
T Consensus 209 q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 209 QTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999765 334566655555554
No 77
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.74 E-value=1.5e-17 Score=176.93 Aligned_cols=173 Identities=15% Similarity=0.157 Sum_probs=119.2
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-------CCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-------RGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-------~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
.+.+|.++++.+.+++++++++|||||||+++..++++.+.... .....+++++.|+|+|+.|+++++.....
T Consensus 46 ~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (253)
T 1wrb_A 46 PTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 125 (253)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999988775432 11223567777999999999999876543
Q ss_pred CccCcEeeEEEeccc------ccCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhh-
Q 046397 83 EKLGESVGYKVRLEG------MKGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSR- 154 (901)
Q Consensus 83 ~~~g~~vGy~vr~e~------~~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~- 154 (901)
. .+..++.-..... .....++|+|+||+.|++.+.... .+.++++||+||||+ +...-+...++.++..
T Consensus 126 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~--~~~~~~~~~~~~i~~~~ 202 (253)
T 1wrb_A 126 N-TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR--MLDMGFEPQIRKIIEES 202 (253)
T ss_dssp T-SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH--HHHTTCHHHHHHHHHSS
T ss_pred c-CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH--HHhCchHHHHHHHHhhc
Confidence 2 2222221111110 112457999999999999887765 688999999999995 2111122334444442
Q ss_pred -CC---CceEEEeccCCCHH--HH-HhhhCCCcEEeeC
Q 046397 155 -RP---ELRLVLMSATLDAE--LF-SSYFGGATVINIP 185 (901)
Q Consensus 155 -~~---~~kiIlmSATl~~~--~f-~~yf~~~~~i~i~ 185 (901)
.+ +.++++||||++.+ .+ ..|+.++..+.+.
T Consensus 203 ~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 203 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp CCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred cCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 22 67899999999765 33 3555554444443
No 78
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=180.49 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=113.5
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC--CCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVR--GAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~--~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
.+++|.++++.+..++++++++|||||||+++..++++.+..... .....++|+.|+|+||.|+++++.+... ..+.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~-~~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT-HHVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-TCCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh-hcCc
Confidence 678999999999999999999999999999999999887754211 1233567777999999999999876543 3333
Q ss_pred EeeEEEecccc------cCCCceEEEEcHHHHHHHHhcCC--CCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCc
Q 046397 88 SVGYKVRLEGM------KGRDTRLLFCTTGILLRRLLVDR--NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PEL 158 (901)
Q Consensus 88 ~vGy~vr~e~~------~~~~t~Ii~~T~g~Llr~L~~~~--~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~ 158 (901)
.++.-...... ....++|+|+|||.++..+...+ .+.++++|||||||.- .+..+ ...+..++... ++.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l-~~~~~-~~~l~~i~~~~~~~~ 233 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRI-LDVGF-EEELKQIIKLLPTRR 233 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHH-HHTTC-HHHHHHHHHHSCSSS
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHH-hhhhH-HHHHHHHHHhCCCCC
Confidence 33322211110 11247899999999999887754 6889999999999941 22222 23344444443 568
Q ss_pred eEEEeccCCCHH
Q 046397 159 RLVLMSATLDAE 170 (901)
Q Consensus 159 kiIlmSATl~~~ 170 (901)
++|+||||++.+
T Consensus 234 q~l~~SAT~~~~ 245 (262)
T 3ly5_A 234 QTMLFSATQTRK 245 (262)
T ss_dssp EEEEECSSCCHH
T ss_pred eEEEEEecCCHH
Confidence 999999999765
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.70 E-value=2.7e-17 Score=163.03 Aligned_cols=120 Identities=24% Similarity=0.372 Sum_probs=103.0
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhc
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAET 355 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaet 355 (901)
.+..+.....++++|||++++.+++.+++.|...+ +.+..+||+|+..+|..+++.|++|..+|||||+++++
T Consensus 25 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 97 (163)
T 2hjv_A 25 LLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG-------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR 97 (163)
T ss_dssp HHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTT
T ss_pred HHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 34444455567899999999999999999998764 33779999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 356 SITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 356 GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
|+|+|++++||+ ||++. |..+|.||+||+||. ++|.|+.+++.....
T Consensus 98 Gld~~~~~~Vi~--------~~~p~----------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 98 GIDIENISLVIN--------YDLPL----------EKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp TCCCSCCSEEEE--------SSCCS----------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred CCchhcCCEEEE--------eCCCC----------CHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 999999999999 66543 556777999999999 589999999876543
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.70 E-value=2.7e-17 Score=163.33 Aligned_cols=120 Identities=21% Similarity=0.353 Sum_probs=99.4
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhc
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAET 355 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaet 355 (901)
.+..+......+++|||++++++++.+++.|...+ +.+..+||+|+..+|..+++.|++|..+|||||+++++
T Consensus 20 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 20 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK-------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence 34445555577899999999999999999998753 34779999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 356 SITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 356 GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
|+|+|++++||+ ||++.+.. +|.||+|||||. ++|.|+.+++.....
T Consensus 93 G~d~~~~~~Vi~--------~~~p~~~~----------~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 93 GIDVQQVSLVIN--------YDLPANKE----------NYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp TCCCCSCSEEEE--------SSCCSSGG----------GGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred CCCcccCCEEEE--------eCCCCCHH----------HHHHHhcccccCCCCceEEEEEcchHHH
Confidence 999999999999 66655444 555999999999 689999999876543
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=164.51 Aligned_cols=126 Identities=17% Similarity=0.293 Sum_probs=102.7
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhc
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAET 355 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaet 355 (901)
.+..+......+++||||+++.+++.+++.|...+ +.+..+||+|+..+|..+++.|++|..+|||||+++++
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG-------HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT-------CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCT
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhc
Confidence 34455555677899999999999999999998753 34779999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 356 SITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 356 GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
|+|+|++++||+ ||.+.+.. .+.|..+|.||+|||||. ++|.|+.+++.....
T Consensus 97 Gid~~~~~~Vi~--------~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 97 GIDVKQVTIVVN--------FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp TTCCTTEEEEEE--------SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred CCCcccCCEEEE--------eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 999999999999 55542221 125778899999999998 689999999876543
No 82
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=164.95 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=104.9
Q ss_pred hcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-CCCeeEEEEecchHHHHHH-HHHHHHHHhC
Q 046397 5 RRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-RGAVCSIICTQPRRISAMS-VSERVASERG 82 (901)
Q Consensus 5 r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-~~~~~~IlvtqPrr~la~q-va~rva~e~~ 82 (901)
...++.+++|.++++.+.+++++++.+|||+|||+++..++++.+.... .+...+++++.|+++++.| +.+.+.....
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999999999999888887654322 1123356666699999999 6666655544
Q ss_pred C--ccCcEeeEEEeccc--ccCCCceEEEEcHHHHHHHHhcC-------CCCCCceEEEEecCcccCcchhHHHHHHHHH
Q 046397 83 E--KLGESVGYKVRLEG--MKGRDTRLLFCTTGILLRRLLVD-------RNLKGVTHVIVDEVHERGMNEDFLLIVLKDL 151 (901)
Q Consensus 83 ~--~~g~~vGy~vr~e~--~~~~~t~Ii~~T~g~Llr~L~~~-------~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~l 151 (901)
. .++...|..-.... ......+|+|+||+.|.+.+... ..+.++++|||||||+.. ...++..+++.+
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~-~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN-KEAVYNNIMRHY 187 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHH
T ss_pred cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc-cCCcHHHHHHHH
Confidence 3 11111111000000 00123789999999999988764 346789999999999642 222333444333
Q ss_pred HhhC--------------CCceEEEeccC
Q 046397 152 LSRR--------------PELRLVLMSAT 166 (901)
Q Consensus 152 l~~~--------------~~~kiIlmSAT 166 (901)
+... ++.++|+||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 3322 78899999998
No 83
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.67 E-value=8.5e-17 Score=160.95 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=102.0
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhc
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAET 355 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaet 355 (901)
.+..+......+++||||+++.+++.+++.|...+. .+..+||+|+..+|..+++.|++|..+|||||+++++
T Consensus 21 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 21 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCC-------CEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 444555556778999999999999999999987643 3678999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 356 SITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 356 GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|+|+|++++||+ ||++. |..+|.||+|||||. ++|.|+.+++..
T Consensus 94 Gldi~~~~~Vi~--------~d~p~----------~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 94 GMDIERVNIAFN--------YDMPE----------DSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp TCCGGGCSEEEE--------SSCCS----------SHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred CcchhhCCEEEE--------ECCCC----------CHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 999999999999 66654 556777999999999 589999999864
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.65 E-value=8.4e-17 Score=162.98 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=84.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEE
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVF 364 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~ 364 (901)
..+++|||++++..++.+++.|...+ +.+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~ 117 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 117 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT-------CCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC-------CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCE
Confidence 57899999999999999999998753 34779999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchh
Q 046397 365 VIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVY 419 (901)
Q Consensus 365 VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~ 419 (901)
||+ ||++. |..+|.||+|||||. ++|.|+.+++....
T Consensus 118 VI~--------~d~p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 118 VIN--------FDLPS----------DIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp EEE--------SSCCS----------SHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred EEE--------eCCCC----------CHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 999 76654 555777999999999 58999999987654
No 85
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.64 E-value=4e-16 Score=187.87 Aligned_cols=114 Identities=22% Similarity=0.173 Sum_probs=98.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEE
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVF 364 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~ 364 (901)
.++++|||+++...++.+++.|...++ .+..+||++++.+|.++++.|++|..+|+|||+++++|+|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~l 516 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGI-------KVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSL 516 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCC-------CeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCE
Confidence 457999999999999999999998743 3567999999999999999999999999999999999999999999
Q ss_pred EEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCCCCceEEcCCcch
Q 046397 365 VIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCV 418 (901)
Q Consensus 365 VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~~L~s~~~ 418 (901)
||+++..+ |. .+.|..+|.||+|||||.++|.|+.+++...
T Consensus 517 Vi~~d~d~---~G----------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 517 VAILDADK---EG----------FLRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp EEETTTTC---CT----------TTTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred EEEeCccc---cc----------CCCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 99944432 11 1346778889999999999999999988643
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.62 E-value=4.1e-16 Score=158.72 Aligned_cols=107 Identities=21% Similarity=0.382 Sum_probs=94.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEE
Q 046397 286 PGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFV 365 (901)
Q Consensus 286 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~V 365 (901)
++++|||++++.+++.+++.|...+ +.+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~V 126 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHV 126 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEE
Confidence 5689999999999999999998754 336789999999999999999999999999999999999999999999
Q ss_pred EeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcc
Q 046397 366 IDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRC 417 (901)
Q Consensus 366 Id~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~ 417 (901)
|+ ||++. |..+|.||+|||||. ++|.|+.+++..
T Consensus 127 I~--------~d~p~----------~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 127 IN--------YDMPE----------EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EE--------SSCCS----------SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EE--------eCCCC----------CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99 76654 455677999999999 589999999864
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.40 E-value=4.6e-17 Score=162.53 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=100.8
Q ss_pred HHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcc
Q 046397 277 LCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETS 356 (901)
Q Consensus 277 l~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetG 356 (901)
+..+......+++|||++++.+++.+++.|...+ +.+..+||+|+..+|..+++.|++|..+|||||+++++|
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 93 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREAG-------INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93 (170)
Confidence 3344444567899999999999999999998753 346689999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-CCCceEEcCCcchhh
Q 046397 357 ITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-QPGECYRLYPRCVYD 420 (901)
Q Consensus 357 IdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-~~G~c~~L~s~~~~~ 420 (901)
+|+|++++||+ ||++.+ ..+|.||+|||||. ++|.|+.+++.....
T Consensus 94 id~~~~~~Vi~--------~~~p~~----------~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 94 IDIPDVSHVFN--------FDMPRS----------GDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 99999999999 666544 44566999999999 489999999876443
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.55 E-value=1.6e-14 Score=156.24 Aligned_cols=148 Identities=10% Similarity=0.000 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCc
Q 046397 8 LPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGE 87 (901)
Q Consensus 8 LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~ 87 (901)
+..+.+|.+.++.+.+++..++++|||+|||.++..++..... .+. .+++++.|+++|+.|+.+++.+.... .+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~---~~~lil~Pt~~L~~q~~~~l~~~~~~-~~~ 186 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYE---GKILIIVPTTALTTQMADDFVDYRLF-SHA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HCS---SEEEEECSSHHHHHHHHHHHHHHTSC-CGG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cCC---CeEEEEECCHHHHHHHHHHHHHhccc-ccc
Confidence 4678899999999888888899999999999998777665442 222 25777779999999999999765332 211
Q ss_pred EeeEEEecccc---cCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhC-CCceEEEe
Q 046397 88 SVGYKVRLEGM---KGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRR-PELRLVLM 163 (901)
Q Consensus 88 ~vGy~vr~e~~---~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~-~~~kiIlm 163 (901)
.++.-...... .....+|+|+|++.+.+.. ...+.++++|||||||.- ..+ .++.++... +..++++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~--~~~----~~~~il~~~~~~~~~l~l 258 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLA--TGK----SISSIISGLNNCMFKFGL 258 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGC--CHH----HHHHHTTTCTTCCEEEEE
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccC--Ccc----cHHHHHHHhhcCCeEEEE
Confidence 22211111111 1146899999999886542 125678999999999973 333 344454543 57899999
Q ss_pred ccCCC
Q 046397 164 SATLD 168 (901)
Q Consensus 164 SATl~ 168 (901)
|||+.
T Consensus 259 SATp~ 263 (282)
T 1rif_A 259 SGSLR 263 (282)
T ss_dssp CSSCC
T ss_pred eCCCC
Confidence 99994
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.53 E-value=3.3e-14 Score=167.72 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEE--ecchh
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVL--ATNIA 353 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIv--aTnia 353 (901)
.+..++.. .+|.+|||+|+....+.+++.+... .+ ..++.. .++.++++.|+.+. .|++ +|..+
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~---------~~-~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~ 440 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI---------PV-IEENKK--TRHEEVLELMKTGK-YLVMLVMRAKE 440 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS---------CE-EESTTT--CCHHHHHHHHHTSC-CEEEEEC----
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC---------ce-EecCCC--CcHHHHHHHHhcCC-eEEEEEecCce
Confidence 34444443 5789999999999999998877532 12 345543 34566667776653 5666 89999
Q ss_pred hcccCCCC----eEEEEeCCCccccccccCC-------------CccccccccccHhcHHHHhhhcCCCC--CCceEEc
Q 046397 354 ETSITIND----VVFVIDCGKAKETSYDALN-------------NTSCLLPSWISTVSAQQRRGRAGRVQ--PGECYRL 413 (901)
Q Consensus 354 etGIdIp~----V~~VId~G~~k~~~yd~~~-------------~~~~l~~~~iSka~~~QR~GRAGR~~--~G~c~~L 413 (901)
.+|||+|+ +++||..|+|....-|+.. ....+. .+..-....|-+||+-|.. .|..+.+
T Consensus 441 ~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 441 SEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp -----------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred ecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 99999998 8999999998433222210 000010 0111356789999999984 4544433
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.52 E-value=7.6e-13 Score=157.55 Aligned_cols=119 Identities=19% Similarity=0.156 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
.+..|...+..+.+++ |..+.||+|||.++.++++...+ .|..+.|++ |+++||.|.++.+..... .+|-.|
T Consensus 80 Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvT--PTreLA~Qdae~m~~l~~-~lGLsv 151 (997)
T 2ipc_A 80 HFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVT--VNDYLARRDAEWMGPVYR-GLGLSV 151 (997)
T ss_dssp CCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEE--SSHHHHHHHHHHHHHHHH-TTTCCE
T ss_pred CcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEe--CCHHHHHHHHHHHHHHHH-hcCCeE
Confidence 4778888888898888 89999999999999888865443 233444444 999999999988765542 344444
Q ss_pred eEEEeccc----ccCCCceEEEEcHHHH-HHHHhcC-------CCCC---CceEEEEecCcc
Q 046397 90 GYKVRLEG----MKGRDTRLLFCTTGIL-LRRLLVD-------RNLK---GVTHVIVDEVHE 136 (901)
Q Consensus 90 Gy~vr~e~----~~~~~t~Ii~~T~g~L-lr~L~~~-------~~l~---~~~~IIIDE~He 136 (901)
|.-+...+ .....++|+|+||+.| ++.|..+ ..++ ++.++||||+|.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 43221111 1112479999999999 6666544 2467 899999999994
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.47 E-value=2.4e-13 Score=143.04 Aligned_cols=141 Identities=19% Similarity=0.096 Sum_probs=100.8
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCcc
Q 046397 6 RNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKL 85 (901)
Q Consensus 6 ~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~ 85 (901)
.....+.+|.++++.+.+++.+++++|||+|||+++..++... +. .++++.|+++|+.|+.+++.+ ++..
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~--~~liv~P~~~L~~q~~~~~~~-~~~~- 159 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-FGEE- 159 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CS--CEEEEESSHHHHHHHHHHHGG-GCGG-
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEeCCHHHHHHHHHHHHh-CCCC-
Confidence 3456789999999999999999999999999999887776542 22 345555999999999998866 4432
Q ss_pred CcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 86 GESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 86 g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
.++. +........+|+++|++.+.+.... ....+++|||||+|.- ..+. .+.++...+..++++|||
T Consensus 160 --~v~~---~~g~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l--~~~~----~~~i~~~~~~~~~l~LSA 226 (237)
T 2fz4_A 160 --YVGE---FSGRIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL--PAES----YVQIAQMSIAPFRLGLTA 226 (237)
T ss_dssp --GEEE---ESSSCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCC--CTTT----HHHHHHTCCCSEEEEEEE
T ss_pred --eEEE---EeCCCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccC--CChH----HHHHHHhccCCEEEEEec
Confidence 0221 1112224578999999998876542 2245899999999963 2222 234455566788999999
Q ss_pred CCCH
Q 046397 166 TLDA 169 (901)
Q Consensus 166 Tl~~ 169 (901)
|+..
T Consensus 227 Tp~r 230 (237)
T 2fz4_A 227 TFER 230 (237)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9854
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.27 E-value=4.4e-10 Score=132.82 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEec--chh
Q 046397 276 VLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLAT--NIA 353 (901)
Q Consensus 276 ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaT--nia 353 (901)
.+..++.. .+|.+|||+|+....+.+++.+ ...++.=..+++..+..+.|+ ..+ .-|++|| ...
T Consensus 384 ~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~~----------~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~ 449 (551)
T 3crv_A 384 YLLKIYFQ-AKANVLVVFPSYEIMDRVMSRI----------SLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHH-CSSEEEEEESCHHHHHHHHTTC----------CSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCS
T ss_pred HHHHHHHh-CCCCEEEEecCHHHHHHHHHhc----------CCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEeccee
Confidence 34444433 4689999999999999888621 112333233566666666665 223 3799998 699
Q ss_pred hcccCCC-----CeEEEEeCCCccccccccCC-----------Ccccc---ccccccHhcHHHHhhhcCCCCCCce
Q 046397 354 ETSITIN-----DVVFVIDCGKAKETSYDALN-----------NTSCL---LPSWISTVSAQQRRGRAGRVQPGEC 410 (901)
Q Consensus 354 etGIdIp-----~V~~VId~G~~k~~~yd~~~-----------~~~~l---~~~~iSka~~~QR~GRAGR~~~G~c 410 (901)
.+|||+| ..+.||-.|+|--.. |+.. +-..+ ...+ --....|-+||+=|.....+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G 523 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKC 523 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEE
T ss_pred cccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccE
Confidence 9999999 378888889885433 3321 11011 1122 34467799999999864433
No 93
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.19 E-value=4.7e-11 Score=101.00 Aligned_cols=68 Identities=29% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHh
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGMEI-MGQPCNNKKNAEKDAAAEALQWIM 876 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 876 (901)
|+.|||+.||+++++.+..+|.|.+...++.| |.++|.++|..| .|.-.+|||.||.+||..||.+|.
T Consensus 1 ~~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 1 GSHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp -CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999997667666 999999999877 455438999999999999999985
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.15 E-value=5e-11 Score=127.72 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=84.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhC-ccCCCCCceEEEEecCCCCHHHHHhhcCCCCCC-CeE-EEEecchhhcccCCCC
Q 046397 285 RPGAVLVFMTGWDDINSLNDKLQAN-RILGDPTRVLLLTCHGSMASSEQRLIFDEPESG-VRK-IVLATNIAETSITIND 361 (901)
Q Consensus 285 ~~g~iLVFl~~~~~i~~l~~~L~~~-~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g-~~k-IIvaTniaetGIdIp~ 361 (901)
.+.++|||+.....+..+.+.|... +.. +..+||+++..+|.++++.|.+| ..+ +|+||+++++|+|+++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~~-------~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~ 183 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNTE-------VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 183 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCSC-------CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCCc-------EEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCccc
Confidence 5679999999999999999999863 332 44789999999999999999887 566 7899999999999999
Q ss_pred eEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCCC---CCceEEcCCcchhh
Q 046397 362 VVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQ---PGECYRLYPRCVYD 420 (901)
Q Consensus 362 V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~---~G~c~~L~s~~~~~ 420 (901)
+++||. ||++.+...+. ||.||++|.+ +-.+|+|+++...+
T Consensus 184 a~~VI~--------~d~~wnp~~~~----------Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 184 ANRVIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp CSEEEE--------CSCCSCTTTC------------------------CCEEEEEEETTSHH
T ss_pred CCEEEE--------ECCCCChhHHH----------HHHHhccccCCCCceEEEEEeeCCCHH
Confidence 999999 88888777766 9999999984 44568888876554
No 95
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.10 E-value=3.5e-10 Score=99.10 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=61.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
++.|||+.||+++++.+..+|.|.+ ...++.| |.++|.++|....| .+++||.||.+||..||..|...
T Consensus 14 ~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 14 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG-SGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCEEEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence 5679999999999999999999998 4456665 99999999996677 68999999999999999999864
No 96
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.07 E-value=3.1e-10 Score=99.50 Aligned_cols=70 Identities=23% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 808 PGGDNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.|+.|||+.||+++++.+..+|.|.+. ..++.| |.+.|.++|....|. ++|||.||.+||..||.+|...
T Consensus 3 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 3 SGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT-GPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp CSSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHHhcc
Confidence 456799999999999999999999984 456655 999999999877787 8999999999999999999753
No 97
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.04 E-value=5.3e-10 Score=97.73 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=61.6
Q ss_pred CCCCCCCCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 805 ESGPGGDNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
|......|||+.||+++++.+...|.|.+. ..++.+ |.++|.++|....| .++|||.||.+||..||..|...
T Consensus 9 ~~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 9 GLVPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG-SGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CCCCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCEEEEE-eeCCHHHHHHHHHHHHHHHHHcc
Confidence 344455699999999999999999999984 456555 99999999985566 58999999999999999999754
No 98
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.03 E-value=4.5e-10 Score=95.67 Aligned_cols=67 Identities=33% Similarity=0.435 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.|||+.||+++++.+...|.|.+. ..++.| |.+.|.++|..+..-.++|||.||.+||..||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999984 456666 9999999998775556899999999999999999974
No 99
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.01 E-value=4.5e-10 Score=95.75 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 810 GDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
+.|||+.||+++++.+.. |.|.+ ...++.| |.++|.++|....|. ++|||.||.+||..||..|..
T Consensus 6 ~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~~~~~G~-G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGE-GNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEEEEEC-CCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 469999999999999988 99997 4556655 999999999667776 799999999999999999975
No 100
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=98.99 E-value=8.8e-10 Score=99.36 Aligned_cols=72 Identities=28% Similarity=0.286 Sum_probs=58.8
Q ss_pred CCCCCCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCeeeeccCC-CchhhHHHHHHHHHHHHHhcC
Q 046397 807 GPGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGMEIMGQPC-NNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 807 ~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 878 (901)
-+.+.|||+.||+++++.+..+|.|.+...++.| |.++|.++|..|.--.+ +|||.||.+||..||..|...
T Consensus 13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKS 88 (103)
T ss_dssp ------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcc
Confidence 3456699999999999999999999997667666 99999999988744445 899999999999999999853
No 101
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.98 E-value=1.3e-09 Score=101.66 Aligned_cols=73 Identities=23% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeeeec-cCCceEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTKQL-KNGQFRSTVEFNGMEI-MGQPCNNKKNAEKDAAAEALQWIMGGIKT 881 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (901)
...|||+.||+++++.+..+|.|.+... ....|.++|.++|..| .|.-+++||.||.+||..||.+|...+.+
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~~~ 98 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEGR 98 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSSST
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhccccc
Confidence 3459999999999999999999998654 2233999999999887 77766999999999999999999865433
No 102
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=98.98 E-value=6.1e-10 Score=99.51 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=59.6
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCe--eeeccCCCchhhHHHHHHHHHHHHHhcCC
Q 046397 808 PGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGM--EIMGQPCNNKKNAEKDAAAEALQWIMGGI 879 (901)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (901)
.|..|+|+.||+++++. ...|.|.+...++.| |.+.|.++|. ...|. ++|||.||.+||..||.+|....
T Consensus 3 ~g~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 3 SGSSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGN-STNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCCCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEE-ESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEec-cCCHHHHHHHHHHHHHHHHHhhC
Confidence 45679999999999999 889999997666666 9999999994 33443 69999999999999999998743
No 103
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=98.98 E-value=1e-09 Score=92.75 Aligned_cols=66 Identities=27% Similarity=0.174 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 810 GDNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
..|||+.||++++. ...|.|.+. ..++.| |.++|.++|..|.|. ++|||.||.+||..||..|.+.
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEEEEE-ESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEEEee-cCCHHHHHHHHHHHHHHHHhcC
Confidence 45999999999995 789999984 456666 999999999999885 8999999999999999999864
No 104
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.97 E-value=1.9e-09 Score=93.50 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=58.6
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.+.|||+.||+++++.+ ..|.|.+ ...++.| |.+.|.++|....|. +++||.||.+||..||..|..
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~-G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETTEEEEEC-SSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECCEEEEee-eCCHHHHHHHHHHHHHHHHhc
Confidence 45699999999999998 7999998 4456555 999999999777776 799999999999999999975
No 105
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=95.07 Aligned_cols=68 Identities=34% Similarity=0.408 Sum_probs=55.6
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.+.|||+.||+++++.+ ..|.|.+ ...++.| |.++|.++|..+.|. ++|||.||.+||..||..|.+.
T Consensus 12 ~~kd~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp -CCCHHHHHHHHHHHTT-CCCEEEEEEEC-----CCEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcC-CCCEEEEEEeECCCCCCcEEEEEEECCEEEEEE-eCCHHHHHHHHHHHHHHHHHhc
Confidence 35699999999999887 5899998 4566665 999999999988885 8999999999999999999764
No 106
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=98.91 E-value=2.1e-09 Score=89.82 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=56.4
Q ss_pred cHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 813 SKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 813 ~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
|++.||+++++.+...|.|.+ ...++.| |.++|.++|....| .++|||.||.+||..||..|.+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G-~G~sKK~Aeq~AA~~al~~L~~ 69 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG-SGTSKQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCEEEEe-ecCCHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999998 4466666 99999999984455 6899999999999999999863
No 107
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=98.89 E-value=2.2e-09 Score=90.11 Aligned_cols=64 Identities=28% Similarity=0.332 Sum_probs=56.3
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 808 PGGDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
+.+.||++.||++ ...|.|.+ ...++.| |.++|.++|..|.|. ++|||.||.+||..||..|.+
T Consensus 1 p~~knp~s~L~E~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G~-G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 1 PSGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CCSSCHHHHHHHH-----CCSCEEEEEECCCCTTTCCEEEEEECSSCEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHh-----CCCCEEEEEEeECCCCCceEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHHHh
Confidence 3578999999999 47899997 4456666 999999999999987 899999999999999999975
No 108
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.88 E-value=4.1e-09 Score=94.06 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=61.2
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeeee-ccC-CceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCCC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTKQ-LKN-GQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIK 880 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (901)
.+.|||+.||+++++.+..+|.|.+.. .++ ..|.+.|.++|..+.--.+++||.||.+||..||.+|.....
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 87 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFV 87 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhh
Confidence 667999999999999999999999854 222 459999999998775445899999999999999999986433
No 109
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.80 E-value=1.5e-08 Score=90.26 Aligned_cols=67 Identities=19% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 808 PGGDNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 808 ~~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
....|||+.||+++++. ..|.|.+. ..++.| |.++|.++|..|.|. ++|||.||.+||..||..|..
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEAS-GPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEEEEe-eCCHHHHHHHHHHHHHHHhCC
Confidence 45579999999999995 79999985 466666 999999999999885 799999999999999999964
No 110
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.76 E-value=1.4e-08 Score=90.39 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=58.8
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
...|||+.||+++++.+.. |.|.. ...++.| |.+.|.++|..+.--.+++||.||.+||..||..|...
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence 4469999999999999986 89996 4566666 99999999987743447999999999999999999864
No 111
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=98.75 E-value=7.5e-09 Score=89.84 Aligned_cols=67 Identities=27% Similarity=0.224 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHh-----cCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 812 NSKSQLQTLLTR-----AGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 812 ~~~~~l~~~~~~-----~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
|||+.||+++++ .+...|.|.+. ..++.+ |.+.|.++|..+.---++|||.||.+||..||..|...
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 899999999998 46789999984 455555 99999999987644467999999999999999887653
No 112
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=98.72 E-value=1.9e-08 Score=88.09 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.++|+.||++.++.+ .|.|.+ ...++.+ |.++|.++|..|.|. ++|||.||.+||..||..|...
T Consensus 14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~~G~-G~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEEEee-eCCHHHHHHHHHHHHHHHHhhc
Confidence 479999999999988 999998 4456665 999999999999885 8999999999999999999754
No 113
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=98.71 E-value=2e-08 Score=91.97 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEc-----CeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFN-----GMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.|||+.||+++++.+. .|.|.+...++.| |.+.|.++ |..+.--.++|||.||.+||..||..|..
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 4999999999999998 9999977777776 99999994 65543346799999999999999999976
No 114
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.71 E-value=2.3e-08 Score=87.41 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=57.6
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeeeeccCCc----eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ----FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGI 879 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (901)
+..|||+.||+++++.+..+ .|. ...++.| |.+.|.++|..+.---++|||.||.+||..||..|....
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 4 GSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp SSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcC
Confidence 44699999999999999865 999 5555443 999999999887434579999999999999999998753
No 115
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=98.56 E-value=1.4e-07 Score=86.02 Aligned_cols=67 Identities=30% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCCCCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCC
Q 046397 807 GPGGDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGI 879 (901)
Q Consensus 807 ~~~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (901)
-+.+.|+|+.||++++. |.|.+ ...++.| |.++|.++|..|.|. ++|||.||.+||..||..|.+..
T Consensus 33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~~G~-G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEEEee-eCCHHHHHHHHHHHHHHHHHcCC
Confidence 34567999999999763 99998 4456555 999999999999776 69999999999999999998754
No 116
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=98.46 E-value=2.4e-07 Score=78.36 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 813 SKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 813 ~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.||.||+|.+.. +.|.|... ..++.| |.+.|.++|..|.|. ++|||.||.+||..||..|...
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEEEEE-ESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEEEEE-ECCHHHHHHHHHHHHHHHHHcc
Confidence 344455555553 69999985 466666 999999999999985 8999999999999999998653
No 117
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=98.41 E-value=1.3e-07 Score=82.72 Aligned_cols=66 Identities=24% Similarity=0.062 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCe-ee-eccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGM-EI-MGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.|+|..||++++..+ ..|.|.....++.| |...|.++|. .. .|. ++|||.||.+||..||..|.-+
T Consensus 6 ~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~~l 76 (94)
T 1t4n_A 6 MNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKKML 76 (94)
T ss_dssp HHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEE-ESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999864 68999986656555 9999999997 33 444 7999999999999999987654
No 118
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.37 E-value=4.4e-07 Score=90.66 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=59.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEI-MGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
+..|||+.||+++++.+.. |.|... ..++.| |.+.|.++|..+ .|. ++|||.||.+||..||..|...
T Consensus 11 ~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGE-GRSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEE-CCSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecC-CCCHHHHHHHHHHHHHHHHhcc
Confidence 3469999999999999987 999984 556665 999999999877 665 7999999999999999999874
No 119
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.35 E-value=4.2e-07 Score=90.81 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=62.5
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCCCC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKT 881 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (901)
...||++.||+++++.+.++ .|.+...++.| |.++|.++|..|....++|||+|+++||.+||..|.+...+
T Consensus 102 ~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~~~~ 176 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETG 176 (179)
T ss_dssp CCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhcccCc
Confidence 45699999999999999986 99987766655 99999999998766679999999999999999999875443
No 120
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=98.34 E-value=3.6e-07 Score=82.78 Aligned_cols=67 Identities=24% Similarity=0.051 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCe-ee-eccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 810 GDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGM-EI-MGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 810 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
..|+|..||++++.. ...|.|.....++.| |...|.++|. .. .|. ++|||.||.+||..||..+.-+
T Consensus 7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~~l 78 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKKML 78 (117)
T ss_dssp CTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEE-ESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHHHH
Confidence 349999999999994 478999986657666 9999999997 33 444 7999999999999999988764
No 121
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.22 E-value=2e-06 Score=89.22 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=60.2
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeeee-ccC-CceEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTKQ-LKN-GQFRSTVEFNGMEI-MGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.+.|||+.||+++++.|...|.|.... .++ ..|.++|.++|..| .|. ++|||.||.+||..||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 566999999999999999999999853 332 45999999999987 666 7999999999999999999874
No 122
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=98.13 E-value=2.3e-06 Score=88.48 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.|||+.||+++++.+...|.|.+ ...++.| |.++|.++|....| .++|||.||.+||..|+..|+.
T Consensus 150 ~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~~~~G-~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 150 KDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG-EGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCEEEEE-ecCCHHHHHHHHHHHHHHHhhc
Confidence 49999999999999999999998 4455554 99999999995555 6899999999999999999963
No 123
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=98.12 E-value=2.5e-06 Score=90.05 Aligned_cols=68 Identities=29% Similarity=0.309 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.|||+.||+++++.+...|.|.+. ..++.| |.+.|.++|..+.---++|||.||.+||..||..|..+
T Consensus 179 ~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 179 FDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp SCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 499999999999999999999984 355544 99999999976533347899999999999999999765
No 124
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.04 E-value=3e-06 Score=87.93 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCcee---eeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYR---TKQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
+..|||+.||+ +++.+..+|.|. +...++.| |.++|. +..+.|. ++|||.||.+||..||..|...
T Consensus 128 ~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~~~~G~-G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 128 GLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KHTVRGW-CKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp TCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TEEEEEE-ESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EEEEEEE-eCCHHHHHHHHHHHHHHHHHhh
Confidence 45699999999 888899999998 45567666 988887 8888885 7899999999999999999864
No 125
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.04 E-value=5.9e-06 Score=86.07 Aligned_cols=64 Identities=27% Similarity=0.271 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceee-eeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRT-KQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
.+.|||+.||++ ...|.|.+ ...++.| |.++|.++|..|.| -++|||.||.+||..||..|.+.
T Consensus 159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFFEG-SGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEEEE-EESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEEEe-eeCCHHHHHHHHHHHHHHHHccc
Confidence 567999999999 57899997 4456555 99999999999998 58999999999999999999864
No 126
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.99 E-value=1.6e-05 Score=94.65 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 12 KEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 12 ~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
..|.+++..+..+++++|+|++||||||.+...+. .+.....+...+|+++.||+.+|.++.+.+..
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~-~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLA-ALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHH-HHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHH-HHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 45788888888999999999999999976654332 22211112334788888999999998877643
No 127
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=97.93 E-value=1.2e-06 Score=91.85 Aligned_cols=69 Identities=29% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHhcCCCCCceeeeeccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCC
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGI 879 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (901)
.|||+.||+++++.+...|.|.+...++.| |.++|.++|..+.--.++|||.||.+||..|+..|...+
T Consensus 162 ~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 162 LDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 489999999999999999999987666655 999999999764333489999999999999999998653
No 128
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=97.86 E-value=2e-06 Score=90.39 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeee-eccCCCchhhHHHHHHHHHHHHHhc
Q 046397 811 DNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEI-MGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
.|||+.||+++++.+...|.|.+. ..++.| |.+.|.++|..+ .| -++|||.||.+||+.|++.|++
T Consensus 177 ~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 177 KDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence 499999999999999999999984 445443 999999999654 55 5899999999999999998875
No 129
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=97.73 E-value=5.7e-05 Score=78.59 Aligned_cols=67 Identities=28% Similarity=0.204 Sum_probs=57.9
Q ss_pred CCCCcHHHHHHHHHhcCCCCCceeee-eccCCc---eEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcC
Q 046397 809 GGDNSKSQLQTLLTRAGYAAPSYRTK-QLKNGQ---FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGG 878 (901)
Q Consensus 809 ~~~~~~~~l~~~~~~~~~~~p~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (901)
|..|+|+.||.+... ...|.|... ..++.| |.+.|.++|..|.|. +++||.||.+||..||..|...
T Consensus 2 ~~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~G~-G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 2 GPVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEEEEE-ESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEEEEe-cCChHHHHHHHHHHHHHHHHhc
Confidence 467999999999865 468999984 466665 999999999999885 6999999999999999999874
No 130
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.54 E-value=0.00016 Score=85.38 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
.+...|.+++..+..+++++|.|+.|+||||.+-..+ ..+.. .+ ..|+++.|+..+|..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~-~~l~~--~g--~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA-DLAES--LG--LEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHH-HHHHH--TT--CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHH-HHHHh--cC--CeEEEecCcHHHHHHhHhhh
Confidence 3567899999999999999999999999998765443 33322 22 35667779999888776654
No 131
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.54 E-value=0.00025 Score=81.51 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHc-----CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQ-----NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 10 i~~~q~~il~~i~~-----~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
+...|.+++..+.. ...++|.|+.|||||+.+-.. ...+...+. ..|+++.|+..+|..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~-~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFI-IEALISTGE---TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHH-HHHHHHTTC---CCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHH-HHHHHhcCC---ceEEEecCcHHHHHHHHhhh
Confidence 44577777876643 249999999999999776544 344433222 24667779999988877766
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.31 E-value=0.0009 Score=68.89 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=64.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR 101 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 101 (901)
..+..++++|++|+||||.+.+.+..... .+. ++++.+|...-- . . ..+....|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~---~g~--kVli~~~~~d~r-~--~-------~~i~srlG~~--------- 65 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY---ADV--KYLVFKPKIDTR-S--I-------RNIQSRTGTS--------- 65 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH---TTC--CEEEEEECCCGG-G--C-------SSCCCCCCCS---------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh---cCC--EEEEEEeccCch-H--H-------HHHHHhcCCC---------
Confidence 35678999999999999999998876542 233 345555653210 0 0 0111111110
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEecc
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSA 165 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSA 165 (901)
...+.+.+..-++..+.....-..+++|||||++- +..+ ....++.+... +..+|+..-
T Consensus 66 ~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 66 LPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp SCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred ccccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 01223445556666665443334689999999995 3344 44455555443 566665544
No 133
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.24 E-value=0.00058 Score=81.32 Aligned_cols=87 Identities=10% Similarity=0.140 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecc-
Q 046397 273 IEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATN- 351 (901)
Q Consensus 273 i~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTn- 351 (901)
+...+..++... +|.+|||+|+....+.+++.+.. . ... ...+++..++..+++.|. +...|+++|.
T Consensus 436 ~~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~---~----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~ 503 (620)
T 4a15_A 436 MATVIEDIILKV-KKNTIVYFPSYSLMDRVENRVSF---E----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSG 503 (620)
T ss_dssp HHHHHHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS---C----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETT
T ss_pred HHHHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh---c----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEec
Confidence 334444454433 57799999999988888776651 1 111 344455566777878887 7778899874
Q ss_pred -hhhcccCCCC--eEEEEeCCCc
Q 046397 352 -IAETSITIND--VVFVIDCGKA 371 (901)
Q Consensus 352 -iaetGIdIp~--V~~VId~G~~ 371 (901)
...+|||+|+ .+.||-.|+|
T Consensus 504 gsf~EGiD~~g~~l~~viI~~lP 526 (620)
T 4a15_A 504 GRLSEGINFPGNELEMIILAGLP 526 (620)
T ss_dssp SCC--------CCCCEEEESSCC
T ss_pred CceeccccCCCCceEEEEEEcCC
Confidence 8899999986 4577777877
No 134
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=97.23 E-value=4.7e-05 Score=83.27 Aligned_cols=75 Identities=24% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHhcCCCC-CceeeeeccCCceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhcCCCCCcchh
Q 046397 811 DNSKSQLQTLLTRAGYAA-PSYRTKQLKNGQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKTSEECI 886 (901)
Q Consensus 811 ~~~~~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (901)
.|||..||+++++.|... |.|..... .|.|.+.|.++|..+.--.++|||.||.+||+.|+..|+...+-...+|
T Consensus 254 ~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~-~GpF~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~k~~~~~i 329 (341)
T 3rv0_A 254 KNAKNELAELLQINKLGHKLHYRKLTE-MPPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLRKYSVYDL 329 (341)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHHHcCCCCCceEEEEec-cCCEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 499999999999988665 69987542 3459999999997665456889999999999999999998765554443
No 135
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.20 E-value=0.0056 Score=68.12 Aligned_cols=153 Identities=10% Similarity=0.085 Sum_probs=92.2
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhC---C
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERG---E 83 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~---~ 83 (901)
.+....+|.+++..+...+.+++..+-+.|||+.+...++..++. .....|+++.|++..|..+.+++..... .
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 356799999999988777889999999999998887777665443 2234788899999999888777665432 1
Q ss_pred ccCcEe----eEEEecccccCCCceEEEEc--HHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCC
Q 046397 84 KLGESV----GYKVRLEGMKGRDTRLLFCT--TGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPE 157 (901)
Q Consensus 84 ~~g~~v----Gy~vr~e~~~~~~t~Ii~~T--~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~ 157 (901)
.+...+ ...+.+. .+..|.+.+ ++.+ .. .+++++|+||+|.-. +.+-+...++..+...++
T Consensus 238 ll~~~~~~~~~~~I~f~----nGs~i~~lsa~~~sl----rG----~~~~~viiDE~a~~~-~~~el~~al~~~ls~~~~ 304 (385)
T 2o0j_A 238 FLQPGIVEWNKGSIELD----NGSSIGAYASSPDAV----RG----NSFAMIYIEDCAFIP-NFHDSWLAIQPVISSGRR 304 (385)
T ss_dssp TTSCCEEEECSSEEEET----TSCEEEEEECSHHHH----HT----SCCSEEEEESGGGST-THHHHHHHHHHHHHSTTC
T ss_pred hhhhhhccCCccEEEeC----CCCEEEEEECCCCCc----cC----CCCCEEEechhhhcC-CCHHHHHHHHHHhhcCCC
Confidence 111111 1122221 234555444 3322 11 235789999999732 112333344444444455
Q ss_pred ceE-EEeccCCCHHHHHhhh
Q 046397 158 LRL-VLMSATLDAELFSSYF 176 (901)
Q Consensus 158 ~ki-IlmSATl~~~~f~~yf 176 (901)
.++ +.-|++.. ..|.+.+
T Consensus 305 ~kiiiiSTP~g~-n~fy~l~ 323 (385)
T 2o0j_A 305 SKIIITTTPNGL-NHFYDIW 323 (385)
T ss_dssp CEEEEEECCCSS-SHHHHHH
T ss_pred CcEEEEeCCCCc-hhHHHHH
Confidence 554 44555544 3555544
No 136
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.98 E-value=0.0026 Score=76.20 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
+.+.|.+++.. .+..++|.|+.|||||+.+..-+...+. .+...+-+|+++.+++.+|.++.+|+.+..+..
T Consensus 10 Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~-~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 10 LNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMS-VENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp CCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHH-TSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHH-hCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 45678888873 4677899999999999887776655432 222234467777799999999999998887643
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.91 E-value=0.0022 Score=63.95 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=28.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
.+...+++|+.|+||||.+.+.+.+... .+. ++++.+|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~---~g~--~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL---GKK--KVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH---TTC--EEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH---CCC--eEEEEeec
Confidence 3678899999999999999887765542 233 45555577
No 138
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.011 Score=63.99 Aligned_cols=126 Identities=16% Similarity=0.104 Sum_probs=63.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcC-C--CeeEEEEec-chHHHHHHHHHHHHHHhCCccCcEeeEEEecccc
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVR-G--AVCSIICTQ-PRRISAMSVSERVASERGEKLGESVGYKVRLEGM 98 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~-~--~~~~Ilvtq-Prr~la~qva~rva~e~~~~~g~~vGy~vr~e~~ 98 (901)
...+++|.||+|+|||+.+-.. ++.+..... + ....++.+- ..-....+++..+..... |..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v-~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~~-------- 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDV-MDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENLC-------- 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHH-HHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC----------
T ss_pred CCCeEEEECCCCCCHHHHHHHH-HHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCCC--------
Confidence 4568999999999999665444 444432211 1 122222211 111112233334433332 11000
Q ss_pred cCCCceEEEEcHHHHHHHHhcCC-CCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCC
Q 046397 99 KGRDTRLLFCTTGILLRRLLVDR-NLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLD 168 (901)
Q Consensus 99 ~~~~t~Ii~~T~g~Llr~L~~~~-~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~ 168 (901)
... +...|.+.+...+ .-....+||+||+|... ..+++..+++........+-+|+.++|++
T Consensus 112 -~~~------~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 112 -GDI------SLEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp -CCC------CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred -chH------HHHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 000 1233333333211 22446799999999755 77777777764322334566788899985
No 139
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.82 E-value=0.022 Score=67.47 Aligned_cols=153 Identities=10% Similarity=0.093 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc--
Q 046397 7 NLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK-- 84 (901)
Q Consensus 7 ~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~-- 84 (901)
.+....+|..++..+...+.+++.++-|+|||+.+..+++..+... +...|+++.|++..|..+.+.+.......
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 3557899999999987778899999999999998877766555432 23478899999999999888877665332
Q ss_pred -cCcE-e---eEEEecccccCCCceEEEEc--HHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCC
Q 046397 85 -LGES-V---GYKVRLEGMKGRDTRLLFCT--TGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPE 157 (901)
Q Consensus 85 -~g~~-v---Gy~vr~e~~~~~~t~Ii~~T--~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~ 157 (901)
+... . ...+.+ ..+..|.+.+ ++.+.- .+.+++|+||+|+-.-..+.+ ..+...+...++
T Consensus 238 ~~~~~~~~~~~~~i~~----~nGs~i~~~s~~~~~lrG--------~~~~~~iiDE~~~~~~~~~l~-~~~~~~l~~~~~ 304 (592)
T 3cpe_A 238 FLQPGIVEWNKGSIEL----DNGSSIGAYASSPDAVRG--------NSFAMIYIEDCAFIPNFHDSW-LAIQPVISSGRR 304 (592)
T ss_dssp TTSCCEEEECSSEEEE----TTSCEEEEEECCHHHHHH--------SCCSEEEEETGGGCTTHHHHH-HHHHHHHSSSSC
T ss_pred hhccccccCCccEEEe----cCCCEEEEEeCCCCCccC--------CCcceEEEehhccCCchhHHH-HHHHHHhccCCC
Confidence 1111 1 111222 1234555443 333321 136799999999732111333 233334433344
Q ss_pred ceEEE-eccCCCHHHHHhhh
Q 046397 158 LRLVL-MSATLDAELFSSYF 176 (901)
Q Consensus 158 ~kiIl-mSATl~~~~f~~yf 176 (901)
.++++ .|++.. ..|.+.+
T Consensus 305 ~~ii~isTP~~~-~~~y~~~ 323 (592)
T 3cpe_A 305 SKIIITTTPNGL-NHFYDIW 323 (592)
T ss_dssp CEEEEEECCCTT-SHHHHHH
T ss_pred ceEEEEeCCCCc-hhHHHHH
Confidence 55444 444433 3444443
No 140
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.72 E-value=0.0039 Score=62.50 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=28.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
.++..++.|+.||||||.+...+.+.. ..+. ++++.+|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~---~~g~--kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK---IAKQ--KIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTC--CEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH---HCCC--EEEEEEec
Confidence 456899999999999999988877654 2233 45666677
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.69 E-value=0.0064 Score=59.92 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHH---------cCCeEEEEcCCCChHHHHHHHHHH
Q 046397 11 YKEKNRLLTAIS---------QNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 11 ~~~q~~il~~i~---------~~~~viI~~~TGsGKTtq~p~~il 46 (901)
...|+++++.+. .++.+++.||+|+||||.+-...-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 445666666553 478999999999999987765443
No 142
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.65 E-value=0.0077 Score=68.04 Aligned_cols=123 Identities=16% Similarity=0.258 Sum_probs=71.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|++|+||||.+........ ..|..+.++..-+.|..+.......+...+.++ |. ... .
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-----~~-----~~~-~-- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-----YG-----EPN-N-- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-----EC-----CTT-C--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEecCccchhHHHHHHHHHHhcCCce-----ee-----ccc-c--
Confidence 4789999999999998877664332 345667777777888877666655554433221 00 000 0
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccC--cchhHHHHHHHHHHh-hCCCceEEEeccCC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERG--MNEDFLLIVLKDLLS-RRPELRLVLMSATL 167 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~--~~~d~ll~~lk~ll~-~~~~~kiIlmSATl 167 (901)
..|..+...........++++||||++-... .+..+. .-++.+.. ..|+.-+++++|+.
T Consensus 162 ---~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm-~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 162 ---QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLL-EEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp ---SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHH-HHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHH-HHHHHHHHhhCCcceEEEEeCcc
Confidence 0233222222212223578999999997433 333333 33443333 45677778888886
No 143
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.54 E-value=0.004 Score=74.61 Aligned_cols=65 Identities=29% Similarity=0.475 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAIS-QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 10 i~~~q~~il~~i~-~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
+...|.+++..+. .....+|.||+|+|||+.+...|.... .. + .+|+++.|+..++.++.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~--~--~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-KQ--G--LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-HT--T--CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-hC--C--CeEEEEcCchHHHHHHHHHHHh
Confidence 4566777666654 566899999999999988877776544 22 2 3688888999999999999954
No 144
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.0062 Score=53.43 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=56.3
Q ss_pred CCCCCCCCcHHHHHHHHHh-cCCCCCc-----eeeeeccCCceEEEEEEc---CeeeeccCCCchhhHHHHHHHHHHHHH
Q 046397 805 ESGPGGDNSKSQLQTLLTR-AGYAAPS-----YRTKQLKNGQFRSTVEFN---GMEIMGQPCNNKKNAEKDAAAEALQWI 875 (901)
Q Consensus 805 ~~~~~~~~~~~~l~~~~~~-~~~~~p~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (901)
+--.--..|||+|-++++| .+..-.. |.| .+...=.||+.++ -|+|+|. ++.|-.||.+||+.|.+||
T Consensus 11 ~~L~~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t--~g~k~K~~tl~l~WP~~mef~a~-G~rK~eAE~kAAA~AC~kL 87 (119)
T 2db2_A 11 DLLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHT--NGPKKKKVTLHIKWPKSVEVEGY-GSKKIDAERQAAAAACQLF 87 (119)
T ss_dssp CSTTTCSCHHHHHHHHHHHHTTHHHHHHHEEEEEC--CSSSSEEEEEEECSSSCEEEEEE-ESSHHHHHHHHHHHHHHHH
T ss_pred hHHHhCCChHHHHHHHHHHHHccCchhhheeEEee--cCCceeEEEEEecCCCcEEEEee-ccchHHHHHHHHHHHHHHH
Confidence 3344455899999999999 4432221 122 2333347888875 6899986 6789999999999999999
Q ss_pred hcC--CCCCcchhhHH
Q 046397 876 MGG--IKTSEECINHM 889 (901)
Q Consensus 876 ~~~--~~~~~~~~~~~ 889 (901)
+++ -..+++-++|.
T Consensus 88 K~Lgll~p~n~pl~ha 103 (119)
T 2db2_A 88 KGWGLLGPRNELFDAA 103 (119)
T ss_dssp HHHTSSCTTCCCCCHH
T ss_pred HHcCccCCCCCcchHH
Confidence 983 34444545543
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.30 E-value=0.012 Score=66.48 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=71.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|++|+||||.+...+.... ..|..+.++..-|.|..|.......+...+.++ .... ..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~---~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv--------~~~~-~~---- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ---KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV--------FGNP-QE---- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE--------ECCT-TC----
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE--------EecC-CC----
Confidence 5889999999999998877664322 356677788888899888766655544433221 1100 00
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATL 167 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl 167 (901)
..|.-+.+.......-.++++||||.+= |....+-+..-++.+.. ..|+.-++.++||.
T Consensus 165 ---~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 ---KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 1232222211111112358999999996 32233334444544433 34677788888885
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.033 Score=55.79 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHH
Q 046397 12 KEKNRLLTAISQN--QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 12 ~~q~~il~~i~~~--~~viI~~~TGsGKTtq~p~~i 45 (901)
...+++...+..+ ..++|.||+|+|||+.+-.+.
T Consensus 24 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3444555666554 359999999999997665443
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.27 E-value=0.035 Score=56.36 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCC---eEEEEcCCCChHHHHHHHHH
Q 046397 13 EKNRLLTAISQNQ---VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 13 ~q~~il~~i~~~~---~viI~~~TGsGKTtq~p~~i 45 (901)
..+.+...+..++ .++|.||+|+|||+.+-.+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445556666655 79999999999998765544
No 148
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=96.11 E-value=0.0053 Score=64.94 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHhcCCCCCceee-eeccCCceEEEEEEcCee-eeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 812 NSKSQLQTLLTRAGYAAPSYRT-KQLKNGQFRSTVEFNGME-IMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 812 ~~~~~l~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
+||+.||++.+..+. .|.|.. .....+.|..+|.++|.. ..|. ++|||.||.+||+.||..|+.
T Consensus 198 ~~k~~l~el~~~~~~-~~~~~~~~~~~~~~f~v~v~v~~~~~~~G~-G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 198 VPRSPVRELLEMEPE-TAKFSPAERTYDGKVRVTVEVVGKGKFKGV-GRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp SCCCHHHHHHHHCTT-TEEECCCEECTTSCEEEEEEETTTEEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccC-CceeeeccccCCCcEEEEEEEecceEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 456667777766432 233332 123455699999999964 4444 789999999999999999863
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.04 E-value=0.028 Score=53.34 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHH
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~ 41 (901)
.++.+-.....+..++|.||+|+|||+.+
T Consensus 13 ~~~~~~~~a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp HHHHHHHHTTCCSCEEEESSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHH
Confidence 33444444467788999999999999655
No 150
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.99 E-value=0.0069 Score=61.44 Aligned_cols=107 Identities=15% Similarity=0.223 Sum_probs=54.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCC
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR 101 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~ 101 (901)
..+...+|+|+-||||||.+...+.+... .+. ++++.+|...--.. ...|. ...|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~---~g~--kvli~kp~~D~R~~-~~~I~----Sr~G~~------------- 82 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY---AKQ--KVVVFKPAIDDRYH-KEKVV----SHNGNA------------- 82 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH---TTC--CEEEEEEC----------------CBTTBC-------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH---cCC--ceEEEEeccCCcch-hhhHH----HhcCCc-------------
Confidence 45788999999999999988887655432 223 45666676431111 01111 111110
Q ss_pred CceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397 102 DTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV 161 (901)
Q Consensus 102 ~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI 161 (901)
..-+.+..+.-++..+ ..++++|+|||++ ..++-+...+..+.. .+..||
T Consensus 83 ~~a~~v~~~~di~~~i-----~~~~dvV~IDEaQ---Ff~~~~v~~l~~la~--~gi~Vi 132 (219)
T 3e2i_A 83 IEAINISKASEIMTHD-----LTNVDVIGIDEVQ---FFDDEIVSIVEKLSA--DGHRVI 132 (219)
T ss_dssp CEEEEESSGGGGGGSC-----CTTCSEEEECCGG---GSCTHHHHHHHHHHH--TTCEEE
T ss_pred eeeEEeCCHHHHHHHH-----hcCCCEEEEechh---cCCHHHHHHHHHHHH--CCCEEE
Confidence 1122333332222211 2468899999999 455445555666653 344444
No 151
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.90 E-value=0.012 Score=70.03 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
....|.+++..+..+..++|.||+|+|||+.+...+.. +... ...+|+++.|+..++.++.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~-l~~~---~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYH-LARQ---GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHH-HHTS---SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHH-HHHc---CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 46788899998888899999999999999887665543 3221 233688888999999999999854
No 152
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.88 E-value=0.031 Score=55.88 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
+.++|.||+|+|||+.+-.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 78999999999999765443
No 153
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.017 Score=70.60 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
+...|.+++..+..+..++|.||+|+|||+.+...+... ... . ..+|+++.|+..+|.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l-~~~-~--~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHL-SKI-H--KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHH-HHH-H--CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhC-C--CCeEEEEcCcHHHHHHHHHHHHh
Confidence 457899999998888899999999999998776655433 221 1 23688888999999999999965
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.68 E-value=0.044 Score=58.78 Aligned_cols=127 Identities=21% Similarity=0.216 Sum_probs=68.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.++++.++|++|+||||.+........ ...|..+.++-.-|.|..+.+.....+...+..+. . .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----------~--~-- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM--LEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE----------V--C-- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC----------B--C--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--HhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE----------e--c--
Confidence 356899999999999998876654332 22455566665556666655433333322221110 0 0
Q ss_pred ceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCCHHHHHh
Q 046397 103 TRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDAELFSS 174 (901)
Q Consensus 103 t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~~~~f~~ 174 (901)
..+..+...+. .+.++++||||..- +......++.-+..++. ..++-.+++++||.+...+.+
T Consensus 168 -----~~~~~l~~al~---~~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 168 -----YTKEEFQQAKE---LFSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp -----SSHHHHHHHHH---HGGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred -----CCHHHHHHHHH---HhcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence 12333333232 13678999999665 33333333333444433 224445778878876554443
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.66 E-value=0.035 Score=61.36 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHHHHcCCccCCCc---cchhhh-hhhcCCCChHH
Q 046397 459 QSPELLAVQNAIEYLKIIGALDHNEE---LTVLGQ-YLAMLPMEPKL 501 (901)
Q Consensus 459 ~pP~~~~v~~al~~L~~~gald~~~~---lT~lG~-~la~lpl~p~~ 501 (901)
.|.+...+..+++.|...|.|..... --..|+ ...+|.+++.-
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~ 374 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLD 374 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHH
Confidence 45567788899999999999865321 112343 25556666643
No 156
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.66 E-value=0.032 Score=62.85 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
.++.+|.|+.|||||+.+...+. . . .++++.|++.++..+.+++... |. ....
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~------~--~--~~lVlTpT~~aa~~l~~kl~~~-----~~------------~~~~ 213 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN------F--E--EDLILVPGRQAAEMIRRRANAS-----GI------------IVAT 213 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC------T--T--TCEEEESCHHHHHHHHHHHTTT-----SC------------CCCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc------c--C--CeEEEeCCHHHHHHHHHHhhhc-----Cc------------cccc
Confidence 35889999999999987754431 1 1 2344459999999888877211 10 0112
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccC
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSAT 166 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSAT 166 (901)
..-+.|-+.++-.-.. .....+++|||||+-. +....+..++. ..+..++|+..-.
T Consensus 214 ~~~V~T~dsfL~~~~~-~~~~~~d~liiDE~sm--~~~~~l~~l~~----~~~~~~vilvGD~ 269 (446)
T 3vkw_A 214 KDNVRTVDSFLMNYGK-GARCQFKRLFIDEGLM--LHTGCVNFLVE----MSLCDIAYVYGDT 269 (446)
T ss_dssp TTTEEEHHHHHHTTTS-SCCCCCSEEEEETGGG--SCHHHHHHHHH----HTTCSEEEEEECT
T ss_pred cceEEEeHHhhcCCCC-CCCCcCCEEEEeCccc--CCHHHHHHHHH----hCCCCEEEEecCc
Confidence 3447788766532110 1122489999999984 44444443333 2233566665444
No 157
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.66 E-value=0.032 Score=57.24 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=30.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRR 67 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr 67 (901)
.++..+++|+-||||||.+.+.+..... .|. ++++.+|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~--kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQY--KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTC--CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCC--eEEEEeecC
Confidence 4788999999999999999988876542 232 566666764
No 158
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.63 E-value=0.014 Score=69.07 Aligned_cols=112 Identities=23% Similarity=0.367 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 046397 11 YKEKNRLLTAISQ--NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGES 88 (901)
Q Consensus 11 ~~~q~~il~~i~~--~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~ 88 (901)
...|.++++.+.. ..+.+|+|+-|.|||+.+-+.+.... + .++||.|+...+..+.+...+
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-----~---~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-----G---RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-----S---CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-----h---CcEEECCCHHHHHHHHHHhhC---------
Confidence 3467888888876 56889999999999987776665321 1 358899999988766554310
Q ss_pred eeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCC
Q 046397 89 VGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLD 168 (901)
Q Consensus 89 vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~ 168 (901)
.|-|+.|.-++. .....++|||||+=- +.... ++.++.. ...|+||-|++
T Consensus 240 ---------------~i~~~~Pd~~~~------~~~~~dlliVDEAAa--Ip~pl----l~~ll~~---~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ---------------KFRFIAPDALLA------SDEQADWLVVDEAAA--IPAPL----LHQLVSR---FPRTLLTTTVQ 289 (671)
T ss_dssp ---------------GCCBCCHHHHHH------SCCCCSEEEEETGGG--SCHHH----HHHHHTT---SSEEEEEEEBS
T ss_pred ---------------CeEEeCchhhhh------CcccCCEEEEEchhc--CCHHH----HHHHHhh---CCeEEEEecCC
Confidence 155777876543 234689999999975 55544 4444443 34588999985
Q ss_pred H
Q 046397 169 A 169 (901)
Q Consensus 169 ~ 169 (901)
.
T Consensus 290 G 290 (671)
T 2zpa_A 290 G 290 (671)
T ss_dssp S
T ss_pred c
Confidence 3
No 159
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.59 E-value=0.034 Score=60.71 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEEeccC
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVLMSAT 166 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIlmSAT 166 (901)
-+...+...+...+..+|||||+|. +..+..-.+++. +...+ +..+|+.+..
T Consensus 95 ~l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~-lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 95 EVTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKT-LEEPPAETWFFLATRE 147 (334)
T ss_dssp HHHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHH-HTSCCTTEEEEEEESC
T ss_pred HHHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHH-hcCCCCCeEEEEEeCC
Confidence 3444455555667889999999997 444444444444 33333 4555655443
No 160
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.39 E-value=0.062 Score=59.22 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
..+.++|.||+|+|||+.+-.+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 45689999999999997765544
No 161
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.38 E-value=0.025 Score=69.18 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
....|.+++..+..++.++|.||+|+|||+.+...+.. +... ...+|+++.|+..+|.++.+++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~-l~~~---~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYH-LARQ---GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHH-HHTT---CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHH-HHHc---CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 46788888988888899999999999999877655543 3321 223688888999999999999854
No 162
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.36 E-value=0.09 Score=56.61 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
++++.++|++||||||.+........ ..+..+.++-.-++|..+....+.+.+..+..+ + . .......
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-------~-~-~~s~~~~ 171 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAADTFRAAAIEQLKIWGERVGATV-------I-S-HSEGADP 171 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-------E-C-CSTTCCH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccccccHHHHHHHHHHHHHcCCcE-------E-e-cCCccCH
Confidence 35788999999999998876654322 234455555555677666543333433333221 0 1 1111111
Q ss_pred -eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-------hCCCceEEEeccCC
Q 046397 104 -RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-------RRPELRLVLMSATL 167 (901)
Q Consensus 104 -~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-------~~~~~kiIlmSATl 167 (901)
.+. .+.+.+.+ ..++++|||||.- +....+-++..++.+.. ..|+--++.+.||.
T Consensus 172 ~~v~---~~al~~a~-----~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 172 AAVA---FDAVAHAL-----ARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp HHHH---HHHHHHHH-----HTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred HHHH---HHHHHHHH-----hcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 110 11122222 2467899999997 33334444444444332 12444466677774
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.28 E-value=0.062 Score=59.09 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=22.2
Q ss_pred HHHHHHHHcCC---eEEEEcCCCChHHHHHHHHH
Q 046397 15 NRLLTAISQNQ---VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 15 ~~il~~i~~~~---~viI~~~TGsGKTtq~p~~i 45 (901)
+.+...+..++ .++++||+|+|||+.+-.+.
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la 59 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 44555555554 48999999999998775443
No 164
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.27 E-value=0.043 Score=55.65 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=29.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRR 67 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr 67 (901)
.+...+++|+-||||||.+.+.+..... .+. ++++.+|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~---~g~--kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF---AKQ--HAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH---TTC--CEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH---CCC--EEEEEEecc
Confidence 3567889999999999999998876642 233 456666875
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.21 E-value=0.037 Score=61.21 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHHHcCCccCCCcc-chhhh-hhhcCCCChHH
Q 046397 459 QSPELLAVQNAIEYLKIIGALDHNEEL-TVLGQ-YLAMLPMEPKL 501 (901)
Q Consensus 459 ~pP~~~~v~~al~~L~~~gald~~~~l-T~lG~-~la~lpl~p~~ 501 (901)
+|.+...+..+++.|...|.|.....= -.-|+ .+-.|.++|.-
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~ 360 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYALVEDKEK 360 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEEESSSHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEecCCHHH
Confidence 566777888999999999998653110 01332 25566677744
No 166
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.092 Score=56.38 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHH
Q 046397 14 KNRLLTAISQNQ--VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 14 q~~il~~i~~~~--~viI~~~TGsGKTtq~p~~i 45 (901)
.+.+...+..++ .+++.||+|+|||+.+-.+.
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 344555555554 69999999999997665443
No 167
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.01 E-value=0.089 Score=56.27 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.2
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..+++.||+|+|||+.+-.+
T Consensus 68 ~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999766433
No 168
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.95 E-value=0.023 Score=61.37 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
++.+++.||||+|||+.+-.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 6899999999999997654433
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.90 E-value=0.14 Score=55.26 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.1
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
+.++|.||+|+|||+.+-.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 589999999999997765443
No 170
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.89 E-value=0.075 Score=55.64 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=17.3
Q ss_pred HHcCCeEEEEcCCCChHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~ 41 (901)
...+..++|.||+|+|||+.+
T Consensus 26 ~~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHH
Confidence 446778999999999999554
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.88 E-value=0.056 Score=55.13 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~il 46 (901)
.++.++|.||+|+|||+.+-.+.-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999987655443
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.81 E-value=0.078 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.++.+++.||+|+||||.+-...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 58899999999999997765443
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.68 E-value=0.17 Score=54.66 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=19.8
Q ss_pred HHHHHHHHcCC---eEEEEcCCCChHHHHHHHH
Q 046397 15 NRLLTAISQNQ---VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 15 ~~il~~i~~~~---~viI~~~TGsGKTtq~p~~ 44 (901)
+.+...+..++ .+++.||+|+|||+.+-.+
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 34445555443 5677888999999766443
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.49 E-value=0.12 Score=59.95 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.4
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
+.++++||+|+|||+.+-.+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999997765443
No 175
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.39 E-value=0.088 Score=57.84 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
++.++|.||+|+|||+.+-.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5689999999999998765544
No 176
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.34 E-value=0.13 Score=55.69 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.-+++.+.+..++.++|.||.|+|||+.+-.+.
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence 344555666667999999999999998776654
No 177
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.26 E-value=0.11 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=18.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
.....++|.||||+|||+.+ ..+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA-r~i~~ 47 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA-RALHA 47 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH-HHHHH
T ss_pred CCCCcEEEECCCCchHHHHH-HHHHH
Confidence 45678999999999999554 34443
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.01 E-value=0.11 Score=54.62 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..+++.||+|+|||+.+-.+.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 479999999999997664443
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.90 E-value=0.17 Score=54.17 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHH
Q 046397 14 KNRLLTAISQNQ--VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 14 q~~il~~i~~~~--~viI~~~TGsGKTtq~p~~i 45 (901)
.+.+...+.+++ .+++.||+|+|||+.+-.+.
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 344555555543 49999999999997665443
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.89 E-value=0.33 Score=52.56 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.4
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|.||+|+|||+.+-.+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 47999999999999765443
No 181
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.82 E-value=0.068 Score=58.25 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=22.5
Q ss_pred HHHHHHHHcC--CeEEEEcCCCChHHHHHHHHH
Q 046397 15 NRLLTAISQN--QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 15 ~~il~~i~~~--~~viI~~~TGsGKTtq~p~~i 45 (901)
+.+...+..+ ..+++.||+|+|||+.+-.+.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALT 79 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4455556655 569999999999997765443
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.81 E-value=0.4 Score=51.17 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=61.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCc
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDT 103 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t 103 (901)
++++.++|++|+||||.+........ ..+....++-.-++|..+......+..+.+..+ +... . .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~-------~~~~-~-~--- 162 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-------LEVM-D-G--- 162 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-------EECC-T-T---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEE-------EEcC-C-C---
Confidence 45788899999999988766554322 234455555555677665433333333332211 0000 0 0
Q ss_pred eEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccCCC
Q 046397 104 RLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLD 168 (901)
Q Consensus 104 ~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSATl~ 168 (901)
..|..+++.....-...++++|||||.-.-+.+...+.. +..+.. ..|+.-++.+.|+..
T Consensus 163 ----~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~-l~~~~~~~~~~~~~lv~~~~~~ 223 (295)
T 1ls1_A 163 ----ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE-LARLKEVLGPDEVLLVLDAMTG 223 (295)
T ss_dssp ----CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH-HHHHHHHHCCSEEEEEEEGGGT
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH-HHHHhhhcCCCEEEEEEeCCCc
Confidence 123333332211111246899999999533343322222 222222 245554555666643
No 183
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.80 E-value=0.2 Score=53.75 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...++|.||+|+|||+.+-.+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 368999999999999765443
No 184
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.76 E-value=0.28 Score=52.68 Aligned_cols=50 Identities=24% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCC-CceEEEec
Q 046397 112 ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRP-ELRLVLMS 164 (901)
Q Consensus 112 ~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~-~~kiIlmS 164 (901)
-+...+...|...+..+|||||+|. +..+..-.+++ .+...| +..+|+.+
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk-~LEep~~~t~fIl~t 119 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLK-ALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHH-HHHSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHH-HHhCCCCCeEEEEEE
Confidence 3455555566677899999999996 34444434443 444443 44555554
No 185
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.74 E-value=0.063 Score=53.60 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=28.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
.++..++.||.||||||-+.+.+-....+ +. ++++..|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~--kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEccc
Confidence 46789999999999999999988766543 22 34444476
No 186
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.68 E-value=0.044 Score=65.09 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=50.4
Q ss_pred HHHHHHHH----HHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 11 YKEKNRLL----TAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 11 ~~~q~~il----~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
++.|.+++ +++.+++++++.+|||+|||..+..+++..+...+ .+|+++.||++++.|+.+.+..
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~----~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK----LKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT----CEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC----CeEEEECCCHHHHHHHHHHHHH
Confidence 34555554 56789999999999999999999998887764322 2677777999999999876644
No 187
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.25 E-value=0.33 Score=52.81 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=22.2
Q ss_pred HHHHHHHcCCe--EEEEcCCCChHHHHHHHHH
Q 046397 16 RLLTAISQNQV--VIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 16 ~il~~i~~~~~--viI~~~TGsGKTtq~p~~i 45 (901)
.+...+.+++. +++.||+|+||||.+-.+.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 44455566665 9999999999998775543
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.24 E-value=0.097 Score=53.08 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=23.5
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILES 48 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~ 48 (901)
.+..+..++|.||+||||||.+-+++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45568899999999999998887776544
No 189
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.07 E-value=0.15 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
....+++.||+|+|||+.+-.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 4578999999999999766433
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.07 E-value=0.2 Score=55.79 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...+++.||+|+|||+.+-.+
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 478999999999999766443
No 191
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.99 E-value=0.23 Score=55.19 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=24.0
Q ss_pred CChHHHHHHHHHHHHHcCCccCCCc-cchhhhh-hhcCC--CChHH
Q 046397 460 SPELLAVQNAIEYLKIIGALDHNEE-LTVLGQY-LAMLP--MEPKL 501 (901)
Q Consensus 460 pP~~~~v~~al~~L~~~gald~~~~-lT~lG~~-la~lp--l~p~~ 501 (901)
+.+...+..+++.|...|.|..... -..-|+. +-.|. ++|..
T Consensus 349 ~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~~~~~~~~ 394 (412)
T 1w5s_A 349 PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLAPHLPADR 394 (412)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeCCCCCHHH
Confidence 4456678889999999999865321 1123443 44555 66644
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.92 E-value=0.21 Score=54.12 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=16.5
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+++.||+|||||+.+-.+
T Consensus 46 ~~iLL~GppGtGKT~la~al 65 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAV 65 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 67999999999999666443
No 193
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.68 E-value=0.38 Score=51.97 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHH
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p~~il 46 (901)
+++.+ +.. +.++|.||.|+|||+.+-.+.-
T Consensus 23 ~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 23 EKLKG-LRA-PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp HHHHH-TCS-SEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHH-hcC-CcEEEECCCCCCHHHHHHHHHH
Confidence 34444 444 7999999999999987766553
No 194
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.57 E-value=0.49 Score=51.44 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=25.6
Q ss_pred CCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCC
Q 046397 123 LKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATL 167 (901)
Q Consensus 123 l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl 167 (901)
..+..+||+||+|. ++.+....+++.+-...++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999997 55555444444443333455666665543
No 195
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.50 E-value=0.16 Score=60.83 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.+.|.+++.. .+..++|.|+.|||||+.+..-+...+...+. ....|+++..++.+|.++.+|+....+...
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~---- 75 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTLGRKE---- 75 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHSCTTT----
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHcCccc----
Confidence 34677777775 36788999999999998877666544432221 334677777999999999999987765321
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHh
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLL 118 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~ 118 (901)
...+.++|-..+...+.
T Consensus 76 ------------~~~~~v~Tfhs~~~~il 92 (673)
T 1uaa_A 76 ------------ARGLMISTFHTLGLDII 92 (673)
T ss_dssp ------------TTTSEEEEHHHHHHHHH
T ss_pred ------------ccCCEEEeHHHHHHHHH
Confidence 12467888765554443
No 196
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.40 E-value=1.1 Score=52.85 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHHHH
Q 046397 14 KNRLLTAISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 14 q~~il~~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+.+...+..+..+++.||+||||||.+-.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHH
Confidence 345666678899999999999999976643
No 197
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.10 E-value=0.12 Score=66.51 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=55.6
Q ss_pred cCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhc-CCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 6 RNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSV-RGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 6 ~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~-~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
......+.|.+++.. .+++++|.|..|||||+.+..-++..+.... .-..-.|+|+.+|+.+|..+.+|+....+
T Consensus 7 ~~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp ---CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 345567788888876 3779999999999999998877776554311 11334688888999999999999977654
No 198
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.09 E-value=0.13 Score=58.70 Aligned_cols=34 Identities=12% Similarity=0.288 Sum_probs=26.9
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQFILESEI 50 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~ 50 (901)
++.-+..+..++|.|++|+||||.+.+++.....
T Consensus 196 ~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 196 MTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp HHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3334556789999999999999999888876553
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.06 E-value=0.39 Score=54.53 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=20.0
Q ss_pred HHHHHHcCC--eEEEEcCCCChHHHHHHH
Q 046397 17 LLTAISQNQ--VVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 17 il~~i~~~~--~viI~~~TGsGKTtq~p~ 43 (901)
+...+..++ .+++.||+|+||||.+-.
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHH
Confidence 345555555 599999999999976543
No 200
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.06 E-value=0.4 Score=54.29 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+.+++.||+|+||||.+-.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ai 150 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357999999999999766433
No 201
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.84 E-value=0.25 Score=59.85 Aligned_cols=106 Identities=21% Similarity=0.176 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 046397 10 AYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESV 89 (901)
Q Consensus 10 i~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~v 89 (901)
+.+.|.+++.. .+..++|.|..|||||+.+..-+...+.+.+ -....|+++..|+.+|.++.+|+....+..
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~----- 83 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLGGA----- 83 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHGGG-----
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhccc-----
Confidence 45678887775 3567899999999999887766654443222 233467777899999999999998776431
Q ss_pred eEEEecccccCCCceEEEEcHHHHHHHHhc-CCCCC--CceEEEEecCc
Q 046397 90 GYKVRLEGMKGRDTRLLFCTTGILLRRLLV-DRNLK--GVTHVIVDEVH 135 (901)
Q Consensus 90 Gy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~-~~~l~--~~~~IIIDE~H 135 (901)
...+.++|-..+...+.. ..... .-+.-|+|+.+
T Consensus 84 ------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp ------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred ------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 123578887655444332 11100 11245677655
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.46 E-value=0.54 Score=50.06 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.9
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
..+++.||+|+|||+.+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 4799999999999976643
No 203
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.37 E-value=0.65 Score=52.18 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=34.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva 78 (901)
+.++.++|++|+||||.+....... . ..+..+.++-.-+.+..+.......+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l--~-~~g~~Vllvd~D~~r~aa~~qL~~~~ 149 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY--K-GKGRRPLLVAADTQRPAAREQLRLLG 149 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH--H-TTTCCEEEEECCSSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--H-HcCCeEEEeeccccCchhHHHHHHhc
Confidence 3478889999999998877655432 2 34556667777778877764333333
No 204
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.23 E-value=0.22 Score=53.90 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...+++.||+|+|||+.+-.+
T Consensus 51 ~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 357999999999999766443
No 205
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.08 E-value=0.76 Score=49.79 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=61.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCC
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRD 102 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~ 102 (901)
.+.++.+.||+||||||.+-..... +. ..+....+.-.-+.|..+.......+...+.. + -.... ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~--l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~------~--v~q~~-~~- 194 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW--LK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK------V--IKHSY-GA- 194 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCE------E--ECCCT-TC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HH-hcCCEEEEEeecccccchHHHHHHHHHHcCce------E--Eeccc-cC-
Confidence 3568999999999999987655432 22 23334444444445555554444444433321 1 11110 00
Q ss_pred ceEEEEcHH-HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHH
Q 046397 103 TRLLFCTTG-ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAE 170 (901)
Q Consensus 103 t~Ii~~T~g-~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~ 170 (901)
.|. .....+.. ....+++++++|.+-...........+-.......|+..++++.||...+
T Consensus 195 ------~p~~~v~e~l~~-~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~ 256 (328)
T 3e70_C 195 ------DPAAVAYDAIQH-AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA 256 (328)
T ss_dssp ------CHHHHHHHHHHH-HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH
T ss_pred ------CHHHHHHHHHHH-HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH
Confidence 111 11111100 00134678999998632223333222222112235777888888886433
No 206
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.06 E-value=0.62 Score=52.53 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=65.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.+++++|++|+||||.+........ ...|..+.++-.-|.|..+...........+..+- ... ..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~--~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~--------~~~---~~-- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLR--EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF--------PSD---VG-- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH--HTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC--------CCC---SS--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE--------eCC---CC--
Confidence 3788899999999998877765432 22266777887778887776544444333332211 000 00
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHh-hCCCceEEEeccC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSAT 166 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~-~~~~~kiIlmSAT 166 (901)
.+|..+++.....-.-.++++||||=+-..+.+ +.+...+..+.. ..|+.-++.+.|+
T Consensus 166 ---~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~-~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 166 ---QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD-EAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp ---SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTC-HHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEECCCccccc-HHHHHHHHHHHHhhcCcceeEEeecc
Confidence 134433222111101146899999997522222 233333443332 2444445555665
No 207
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.84 E-value=0.19 Score=55.21 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=16.7
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..+++.||+|||||+.+-.+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHH
Confidence 468999999999997664443
No 208
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.56 E-value=0.17 Score=47.73 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHH
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~ 41 (901)
.++.+......+..+++.||+|+|||+.+
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHH
Confidence 34444455567788999999999999543
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.53 E-value=0.95 Score=54.99 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.5
Q ss_pred eEEEEcCCCChHHHHHH
Q 046397 26 VVIISGETGCGKTTQVP 42 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p 42 (901)
.+++.||||+|||+.+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999996553
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.46 E-value=0.68 Score=49.47 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=65.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCce
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTR 104 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~ 104 (901)
.++.++|++|+||||.+........ ..+..+.++-.-|+|..+...........+..+-. + ...
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~-------~~~---- 162 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E-------PGE---- 162 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C-------TTC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c-------CCC----
Confidence 4788899999999998877654332 23556667777778777665444443333322100 0 000
Q ss_pred EEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCc-chhHHHHHHHHHHh-hCCCceEEEeccCC
Q 046397 105 LLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGM-NEDFLLIVLKDLLS-RRPELRLVLMSATL 167 (901)
Q Consensus 105 Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~-~~d~ll~~lk~ll~-~~~~~kiIlmSATl 167 (901)
..|..++......-.-.++++||||=.-.... ..+.+..-++.+.. ..++.-++.+.|+.
T Consensus 163 ---~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 ---KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 12333332221110114689999999863221 23344433433322 34565666677663
No 211
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.36 E-value=1.7 Score=46.91 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAM 71 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~ 71 (901)
++++.++|++|+||||.+........ ..+....++-.-++|..+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D~~r~~a~ 149 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAADTFRAGAT 149 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCCSCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCcchhHH
Confidence 34788999999999988766554322 2344555555556666543
No 212
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.25 E-value=0.41 Score=50.99 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.2
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
..+++.||+|+|||+.+-.
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999965543
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.44 Score=52.99 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCChHHHHH
Q 046397 24 NQVVIISGETGCGKTTQV 41 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~ 41 (901)
.+-+++.||+|||||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 367999999999999544
No 214
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=89.58 E-value=0.31 Score=43.21 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhc-----CCCCCceeeeec--cCCceEEEEEEcC----eeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 812 NSKSQLQTLLTRA-----GYAAPSYRTKQL--KNGQFRSTVEFNG----MEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 812 ~~~~~l~~~~~~~-----~~~~p~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
|+-++|....++- ....|.|..... .++.| |||.+=. ..|.|.|++|||.|.+.||-+|..-|-.
T Consensus 5 sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 5 SSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp HHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHH
Confidence 3444444444441 246788885322 24557 9998644 3799999999999999999999998865
No 215
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.56 E-value=0.26 Score=55.67 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=30.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMS 72 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~q 72 (901)
.+++++|++|+||||.+........ . .|..+.++-.-|.|..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-~--~G~kVllv~~D~~r~~a~~ 144 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-K--RGLKPALIAADTYRPAAYE 144 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-H--HHCCEEEECCSCCCTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeccccCchHHH
Confidence 3789999999999998877665443 2 2445556655566655543
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.28 E-value=2.1 Score=49.10 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=64.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEecccccCCCceE
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRL 105 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~~~~t~I 105 (901)
+++++|++|+||||.+...+.... ..|..+.++-.-|.|..+...........+..+ |.. ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~---~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v-----~~~----~~~~---- 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ---RKGWKTCLICADTFRAGAFDQLKQNATKARIPF-----YGS----YTEM---- 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE-----EEC----CCCS----
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEeccccchhHHHHHHHHhhccCceE-----Ecc----CCCC----
Confidence 788999999999998877765432 235566677666777777554444433333221 000 0000
Q ss_pred EEEcHH-HHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHH-hhCCCceEEEeccCC
Q 046397 106 LFCTTG-ILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLL-SRRPELRLVLMSATL 167 (901)
Q Consensus 106 i~~T~g-~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll-~~~~~~kiIlmSATl 167 (901)
.|. ++.+.+..- ...+++++|||-+=....+.++... +..+. ...++.-++++.|+.
T Consensus 167 ---dp~~i~~~al~~~-~~~~~DvvIIDTpG~~~~~~~l~~e-l~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 ---DPVIIASEGVEKF-KNENFEIIIVDTSGRHKQEDSLFEE-MLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp ---CHHHHHHHHHHHH-HHTTCCEEEEEECCCCTTCHHHHHH-HHHHHHHHCCSEEEEEEETTC
T ss_pred ---CHHHHHHHHHHHH-HHCCCcEEEEeCCCCcccchhHHHH-HHHHHhhhcCceEEEEEeccc
Confidence 121 221111110 1146899999998643333333322 22222 125666677788774
No 217
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.16 E-value=0.31 Score=48.65 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEec
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQ 64 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvtq 64 (901)
+...++|.+++|.||||++.-..+..+ +.|.+ ++++|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~r--V~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV---GHGKN--VGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH---HTTCC--EEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH---HCCCe--EEEEE
Confidence 456889999999999999988888765 34444 44443
No 218
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.86 E-value=0.31 Score=49.24 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 9 PAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 9 Pi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
|-.-.+..+++.+..++.+.|.||.||||||.+-...
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 4444566789999999999999999999998765544
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.84 E-value=0.66 Score=52.41 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
.+-+++.||+|||||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 4689999999999995543
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.62 E-value=0.25 Score=48.37 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.++.++|+||+||||||.+-..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5778999999999999876543
No 221
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=88.46 E-value=1.6 Score=46.85 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEe
Q 046397 270 FNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLA 349 (901)
Q Consensus 270 ~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIva 349 (901)
+.++..++..+.+ .+.+||||+.......-+.+.+... .+....+.|+....+++. .+....|-+.
T Consensus 111 f~~L~~LL~~l~~--~~~kVLIfsq~t~~LDilE~~l~~~-------~~~y~RlDG~~~~~~~k~-----~~~~~~i~Ll 176 (328)
T 3hgt_A 111 FSVLRDLINLVQE--YETETAIVCRPGRTMDLLEALLLGN-------KVHIKRYDGHSIKSAAAA-----NDFSCTVHLF 176 (328)
T ss_dssp HHHHHHHHHHHTT--SCEEEEEEECSTHHHHHHHHHHTTS-------SCEEEESSSCCC------------CCSEEEEEE
T ss_pred HHHHHHHHHHHHh--CCCEEEEEECChhHHHHHHHHHhcC-------CCceEeCCCCchhhhhhc-----ccCCceEEEE
Confidence 3445555555533 4579999999999888888888754 345667888755443321 2455667666
Q ss_pred cchhhcccC-----CCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhhhcCCC-----CCCceEEcCCcchh
Q 046397 350 TNIAETSIT-----INDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRV-----QPGECYRLYPRCVY 419 (901)
Q Consensus 350 TniaetGId-----Ip~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~-----~~G~c~~L~s~~~~ 419 (901)
|....-|++ .-..+.||- ||+.-+... ...|.+-||-|. ++=..|||.+....
T Consensus 177 tsag~~gin~~~~nl~~aD~VI~--------~DsdwNp~~---------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 177 SSEGINFTKYPIKSKARFDMLIC--------LDTTVDTSQ---------KDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp ESSCCCTTTSCCCCCSCCSEEEE--------CSTTCCTTS---------HHHHHHHCCC---------CCEEEEEETTSH
T ss_pred ECCCCCCcCcccccCCCCCEEEE--------ECCCCCCCC---------hHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 775566675 456666765 776655443 223555444444 45578999887654
Q ss_pred h
Q 046397 420 D 420 (901)
Q Consensus 420 ~ 420 (901)
+
T Consensus 240 E 240 (328)
T 3hgt_A 240 D 240 (328)
T ss_dssp H
T ss_pred H
Confidence 4
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.99 E-value=0.2 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=20.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..+.|+|||||||||.+-..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l 45 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASM 45 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHH
Confidence 567889999999999999876544
No 223
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.98 E-value=1.7 Score=42.64 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=73.6
Q ss_pred CCCcHHHHHHHHHHH--HcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCc
Q 046397 7 NLPAYKEKNRLLTAI--SQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEK 84 (901)
Q Consensus 7 ~LPi~~~q~~il~~i--~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~ 84 (901)
.+|-..-|...+..+ ...++.+|.|.-|++|+.....-++...-+ .|. .|.++.|+...+..+++.+. .
T Consensus 32 ~~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr--~V~vLAp~~~s~~~l~~~~~-----l 102 (189)
T 2l8b_A 32 SVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGR--EVQIIAADRRSQMNMKQDER-----L 102 (189)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTC--CEEEECSTTHHHHHHSCTTT-----C
T ss_pred ccccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCe--EEEEEcCchHHHHHHHhhcC-----c
Confidence 444445566666666 466799999999999998866555554433 333 57777799888877655440 0
Q ss_pred cCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEec
Q 046397 85 LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMS 164 (901)
Q Consensus 85 ~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmS 164 (901)
-+..+ |... .+..+..|..=+.+||||+-. +...-++.++.... ..+.|+|+|-
T Consensus 103 ~~~t~-------------------t~~~---ll~~~~~~tp~s~lIVD~Aek--LS~kE~~~Lld~A~--~~naqvvll~ 156 (189)
T 2l8b_A 103 SGELI-------------------TGRR---QLLEGMAFTPGSTVIVDQGEK--LSLKETLTLLDGAA--RHNVQVLITD 156 (189)
T ss_dssp SSCSS-------------------STTT---TTTTSCCCCCCCEEEEEESSS--HHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred Cccee-------------------ehhh---hhcCCCCCCCCCEEEEechhh--cCHHHHHHHHHHHH--hcCCEEEEeC
Confidence 11111 1100 112222345667999999996 33333344444432 3468988874
Q ss_pred cC
Q 046397 165 AT 166 (901)
Q Consensus 165 AT 166 (901)
-+
T Consensus 157 ~~ 158 (189)
T 2l8b_A 157 SG 158 (189)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.91 E-value=0.61 Score=52.51 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
.+-+++.||+|||||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 3679999999999995543
No 225
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.66 E-value=0.28 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..+.|.||+||||||.+-..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHH
Confidence 346789999999999999876543
No 226
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.44 E-value=0.19 Score=66.36 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=24.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
.+.++++.||+|+|||+.+.+++.+..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888765
No 227
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.39 E-value=0.54 Score=47.99 Aligned_cols=29 Identities=38% Similarity=0.597 Sum_probs=24.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..+..++|.|++|+||||.+.+++....
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998888877654
No 228
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.36 E-value=0.64 Score=44.86 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=23.2
Q ss_pred HHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHH
Q 046397 13 EKNRLLTAISQ--NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 13 ~q~~il~~i~~--~~~viI~~~TGsGKTtq~p~~i 45 (901)
..+++.+.+.. ...++|+||+|+|||+.+-.+.
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHH
Confidence 34455555543 3679999999999997665443
No 229
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.22 E-value=0.42 Score=52.60 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=21.8
Q ss_pred HHHHHcCCeEEEEcCCCChHHHHHHHH
Q 046397 18 LTAISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 18 l~~i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
--.+..+..++|+|||||||||.+-..
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l 195 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKAL 195 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHH
Confidence 335678999999999999999876543
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.17 E-value=0.34 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.0
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+..++|+||+||||||.+-..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHH
Confidence 35788999999999999876544
No 231
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.16 E-value=0.37 Score=55.61 Aligned_cols=27 Identities=41% Similarity=0.519 Sum_probs=21.5
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
+--.+..+.+++|+|||||||||.+-.
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~a 279 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNA 279 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHH
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 334567888999999999999987643
No 232
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.97 E-value=1.2 Score=50.14 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.0
Q ss_pred CeEEEEcCCCChHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVP 42 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p 42 (901)
+-+++.||+|||||+.+-
T Consensus 207 rGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CEEEEESCTTTTHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999996553
No 233
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.94 E-value=0.33 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..++|+||+||||||++-..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999887543
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.81 E-value=2.4 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
+.++.|.|++||||||.+-...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHH
Confidence 4588999999999998876544
No 235
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.72 E-value=1.1 Score=50.17 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.8
Q ss_pred CeEEEEcCCCChHHHHH
Q 046397 25 QVVIISGETGCGKTTQV 41 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~ 41 (901)
+-+++.||+|||||+.+
T Consensus 217 rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SEEEEESSTTTTHHHHH
T ss_pred CCCceECCCCchHHHHH
Confidence 67999999999999544
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.55 E-value=0.35 Score=48.27 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.++.++|+||+||||||.+-..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5788999999999999877544
No 237
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.50 E-value=0.71 Score=47.12 Aligned_cols=31 Identities=35% Similarity=0.576 Sum_probs=25.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEIT 51 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~ 51 (901)
+..+..++|.|++|+|||+.+.+++.+.+..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~ 57 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE 57 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3457899999999999999999988775543
No 238
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.42 E-value=1 Score=50.78 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
.+-+++.||+|||||+.+-
T Consensus 215 prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999996543
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.24 E-value=0.34 Score=48.63 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=18.7
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+..+..+.|.||+||||||.+-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999999987644
No 240
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.24 E-value=0.41 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
+..+..++|+|++||||||..-...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4567899999999999998875543
No 241
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.19 E-value=0.64 Score=44.80 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=22.7
Q ss_pred HHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHH
Q 046397 15 NRLLTAISQ--NQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 15 ~~il~~i~~--~~~viI~~~TGsGKTtq~p~~il 46 (901)
+++++.+.. ...++|.||+|+|||+.+-.+.-
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 345555543 56899999999999977655443
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.80 E-value=0.46 Score=47.54 Aligned_cols=23 Identities=13% Similarity=0.465 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.++.++|+||+|+||||.+-..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 67899999999999998765543
No 243
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.58 E-value=0.46 Score=51.58 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=20.0
Q ss_pred HHHHcCCeEEEEcCCCChHHHHHH
Q 046397 19 TAISQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 19 ~~i~~~~~viI~~~TGsGKTtq~p 42 (901)
-.+..+..+.|+|||||||||.+-
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHH
T ss_pred hhccCCCEEEEECCCCCCHHHHHH
Confidence 345689999999999999998553
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.55 E-value=0.61 Score=52.33 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=21.8
Q ss_pred HHHHHHHH--cCCeEEEEcCCCChHHHHHHHHH
Q 046397 15 NRLLTAIS--QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 15 ~~il~~i~--~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+++..+. .+..++|+|||||||||.+-..+
T Consensus 156 ~~~L~~l~~~~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 156 HDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 34444433 45689999999999998765443
No 245
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.53 E-value=0.35 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=20.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~il 46 (901)
+.+.++++|.||+||||+||+-...-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567889999999999999876543
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.49 E-value=0.45 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..++.+.|.||+||||||.+-..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L 43 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKL 43 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 567899999999999999876543
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.47 E-value=0.35 Score=46.28 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=16.9
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+|++||||||++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999987655
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.25 E-value=1.6 Score=47.98 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..+..++|.|++|+|||+.+.+++.+..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 34578999999999999999888877654
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.22 E-value=0.24 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..+..+.+.||.||||||.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4677899999999999987764
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.16 E-value=0.32 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..++|.|+.||||||.+-..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999876443
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.76 E-value=0.44 Score=51.68 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+.++|+||||||||+.....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 358999999999999765443
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.75 E-value=0.44 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...++|+||||||||+.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHH
Confidence 457899999999999766443
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.74 E-value=0.5 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
++.+.|.||+||||||.+-..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L 21 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 467899999999999876543
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.73 E-value=0.87 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=17.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
..+++.||||+|||+.+- .+.+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~-~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAK-TLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHh
Confidence 378999999999996553 444433
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.71 E-value=0.43 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
+..++|+|+.||||||+.-...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999875543
No 256
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.65 E-value=0.44 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=18.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+..++|+|||||||||.+-..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l 143 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAM 143 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 35668999999999999876543
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=84.33 E-value=1 Score=48.37 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVAS 79 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~ 79 (901)
++.-+..+..++|.|++|+|||+.+.+++...+. .+..+.++.+ -....++..|+..
T Consensus 61 ~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g~~vl~~sl---E~s~~~l~~R~~~ 117 (315)
T 3bh0_A 61 MTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSL---EMGKKENIKRLIV 117 (315)
T ss_dssp HHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TTCEEEEEES---SSCHHHHHHHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEEC---CCCHHHHHHHHHH
Confidence 3344556789999999999999999888876543 2333333332 2445556666643
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.28 E-value=0.76 Score=45.95 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~il 46 (901)
-+..+..++|.|++||||||.+.+++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 355688999999999999998888776
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.20 E-value=0.59 Score=45.55 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
...++++|++||||||+.-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999998776543
No 260
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.97 E-value=0.4 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
+..+..++|+|||||||||.+-..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999998775543
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.93 E-value=0.58 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..++|+||+||||||++-..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 356788999999999999876554
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.91 E-value=0.5 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
+..++|.||||+|||+.+..++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998776543
No 263
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.58 E-value=0.73 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.620 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
+.....++|+|+.||||||+.-.+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999999876553
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=83.41 E-value=0.52 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..++|.|+.||||||..-..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 568999999999999876443
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.06 E-value=0.57 Score=45.31 Aligned_cols=20 Identities=25% Similarity=0.518 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~ 43 (901)
+..++++|+.||||||..-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46799999999999987644
No 266
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.58 E-value=0.77 Score=46.93 Aligned_cols=28 Identities=39% Similarity=0.672 Sum_probs=23.3
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
.+..+..+.|.||+||||||.+-+++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988766643
No 267
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.56 E-value=1.2 Score=59.12 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=26.5
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
-+..+.++++.|++|||||+.+.+++.+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355788999999999999999999998875
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.45 E-value=0.73 Score=44.05 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.3
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
.++|+|+.||||||+.-.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999887654
No 269
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=82.44 E-value=0.69 Score=46.55 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=17.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~il 46 (901)
++++.||+||||+||+-...-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999876553
No 270
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=82.39 E-value=0.97 Score=44.41 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=20.7
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+.....++|+|++||||||+.-...
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34567889999999999999875543
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=82.37 E-value=0.57 Score=45.69 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..+++.|+.||||||+.-.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999876543
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.35 E-value=0.67 Score=48.16 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=16.5
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|+|||||||||.+-...
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999998775543
No 273
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.22 E-value=0.75 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.....++|.|++||||||++-...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999875543
No 274
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.95 E-value=0.73 Score=49.32 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.3
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+||||||||+.+...
T Consensus 11 ~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHH
Confidence 47889999999999766544
No 275
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.80 E-value=0.42 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=15.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..+.|.||+||||||.+-..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999876543
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.67 E-value=0.82 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.....++|+|++||||||+.-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 35678999999999999877554
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.56 E-value=0.79 Score=44.19 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=16.7
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++++|++||||||++-..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 36899999999999987554
No 278
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=81.35 E-value=0.88 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=18.7
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+..++|.|+.||||||.+-..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35789999999999999877544
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=81.23 E-value=0.6 Score=45.07 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+..++|+|+.||||||.+-..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3568999999999999877543
No 280
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.22 E-value=0.89 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+..+..++|+||.||||||.+-.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHH
Confidence 356788999999999999987654
No 281
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=81.20 E-value=0.82 Score=47.12 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
....++|.|+.||||||++-.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34478999999999999886654
No 282
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.94 E-value=2.2 Score=45.60 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
+.++.+.||+||||||.+-...
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4588899999999998876644
No 283
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.89 E-value=0.86 Score=43.67 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
-++++|.|+.||||||+.-.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHH
Confidence 378999999999999887554
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.65 E-value=0.97 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+..++|.|+.||||||+.-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999988654
No 285
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.46 E-value=0.59 Score=47.13 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=22.6
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
-+..+..+.|.||+||||||.+-+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999888776543
No 286
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.35 E-value=0.96 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+..++|+|+.||||||+.-.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999877543
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.21 E-value=0.88 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..++++|+.||||||++-...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999876543
No 288
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=79.75 E-value=0.63 Score=47.86 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 468899999999999997653
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.60 E-value=1.2 Score=44.12 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=15.5
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
+-+||+||+|+||||.+-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 290
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.47 E-value=1.2 Score=47.97 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHH
Q 046397 13 EKNRLLTAISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 13 ~q~~il~~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..+.++..+..+..+++.||+|+|||+.+-.
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHH
Confidence 3445666667788999999999999965543
No 291
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.18 E-value=1.6 Score=49.17 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=29.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISA 70 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la 70 (901)
.+.+++|.|+||||||+.+...+. .++.. + ..++|+=|..+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~-~~~~~--g--~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAY-TGLLR--G--DRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHH-HHHHT--T--CEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHH-HHHHC--C--CcEEEEeCCCchh
Confidence 357899999999999987644443 34332 2 2567777887775
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=79.17 E-value=0.98 Score=44.09 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...++|.|++||||||++-.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987554
No 293
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.05 E-value=1 Score=45.02 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.7
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|+|+.||||||++-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886653
No 294
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.00 E-value=1.8 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...+++.||+|+|||+.+-.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 568999999999999665433
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=78.57 E-value=1.1 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+..++|.|+.||||||.+-..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45778999999999999876543
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.56 E-value=1.1 Score=43.62 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=16.8
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|.|+.||||||++-...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999876543
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.48 E-value=1.1 Score=44.44 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...++|+|+.||||||++-.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 358999999999999887554
No 298
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.45 E-value=0.86 Score=46.36 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=23.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILES 48 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~ 48 (901)
+..+..+.|.||+||||||.+.+++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4567899999999999999888877653
No 299
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.43 E-value=1.2 Score=48.09 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.2
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+|||||||||.....
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999766443
No 300
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.42 E-value=1.2 Score=48.40 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.3
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+|||||||||.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 47899999999999766443
No 301
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.33 E-value=1.6 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=16.9
Q ss_pred cCCeEEEEcCCCChHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~ 43 (901)
....+++.||+|||||+.+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999975533
No 302
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.26 E-value=1.1 Score=44.77 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.6
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|+|+.||||||++-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886543
No 303
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=78.15 E-value=0.99 Score=45.14 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCChHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+..+.|.||+||||||.+-.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~ 41 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456889999999999987643
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.12 E-value=1.2 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+.|.|++||||||.+-..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 467899999999999877544
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.08 E-value=2.3 Score=45.46 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+.++.|.||+||||||.+-...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35689999999999998876554
No 306
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=78.05 E-value=0.76 Score=47.30 Aligned_cols=21 Identities=29% Similarity=0.771 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999997653
No 307
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=78.01 E-value=1.1 Score=44.39 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..++|.|+.||||||++-...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999999886654
No 308
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=77.87 E-value=1.1 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
...++|.|+.||||||+.-...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999886544
No 309
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=77.86 E-value=0.89 Score=45.29 Aligned_cols=24 Identities=38% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+..+..+.|+|++||||||.+-.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHH
Confidence 344567889999999999987644
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=77.83 E-value=1.2 Score=43.87 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.7
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|.|+.||||||++-...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 57899999999999876543
No 311
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=77.83 E-value=1.6 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=17.5
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..++++|+.||||||.+-...
T Consensus 34 ~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999876553
No 312
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.70 E-value=1.9 Score=46.23 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=23.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
..+..++|.|++|+|||+.+.+++.+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~ 123 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQ 123 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999888887643
No 313
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.69 E-value=1.1 Score=44.52 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=17.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..+..+.|.||+||||||.+-.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHH
Confidence 3556889999999999987644
No 314
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.68 E-value=1.3 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
+..+++.|+.||||||++-...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999886553
No 315
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=77.59 E-value=1.1 Score=47.49 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+.-.+..+..++|.|++|+||||.+.+++....
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 334456789999999999999998877765543
No 316
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=77.59 E-value=1.2 Score=43.24 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=17.2
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..++|+|+.||||||++-.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999875543
No 317
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.47 E-value=1.8 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...+++.||+|||||+.+-.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 578999999999999766443
No 318
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=77.40 E-value=1.2 Score=43.29 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+..++++|+.||||||+.-.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4678899999999999876543
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=77.40 E-value=1 Score=44.08 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=16.7
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|.||.||||||.+-..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46889999999999877554
No 320
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=77.28 E-value=1.3 Score=43.98 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..++|+|+.||||||+.-.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999876554
No 321
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.21 E-value=2 Score=49.28 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=21.7
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
.+...++|.|+||||||+.+-.+++..+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999987766665444
No 322
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.17 E-value=1.2 Score=43.55 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=16.7
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|.|+.||||||++-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999986543
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=77.07 E-value=0.98 Score=43.99 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=17.1
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
+.+.|+|++||||||.+-..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568899999999998775543
No 324
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.03 E-value=1.7 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+.+++.||+||||||.+-..
T Consensus 45 ~~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 457899999999999766443
No 325
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.02 E-value=1 Score=47.29 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
+..+..++|.||+||||||.+.+++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999999999998888763
No 326
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.99 E-value=1.3 Score=47.43 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..++.+.|.||+||||||.+-..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHH
Confidence 357899999999999999876543
No 327
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=76.94 E-value=1.3 Score=42.49 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+|+.||||||+.-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999887554
No 328
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=76.75 E-value=0.83 Score=48.19 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999998664
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=76.74 E-value=1.4 Score=43.90 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..++|+|+.||||||++-.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999886554
No 330
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.73 E-value=1.3 Score=44.32 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.7
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|.|+.||||||++-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886554
No 331
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=76.71 E-value=1.9 Score=42.79 Aligned_cols=30 Identities=33% Similarity=0.327 Sum_probs=21.6
Q ss_pred HHHHHHHHc-----CCeEEEEcCCCChHHHHHHHH
Q 046397 15 NRLLTAISQ-----NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 15 ~~il~~i~~-----~~~viI~~~TGsGKTtq~p~~ 44 (901)
+++.+.+.. +..+.|+|+.||||||.+-.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHH
Confidence 345555543 457899999999999876543
No 332
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.60 E-value=3.4 Score=45.24 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
+.++.+.||+||||||.+-...
T Consensus 157 g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4578999999999998876544
No 333
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=76.60 E-value=0.76 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|+||+||||||.+-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 467899999999999998763
No 334
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=76.58 E-value=1.2 Score=44.57 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..+++.|+.||||||++-..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 456778999999999999887553
No 335
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.50 E-value=0.86 Score=46.42 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999997653
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.39 E-value=1.4 Score=43.57 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..++|+|+.||||||+.-.+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999875543
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=76.22 E-value=1.6 Score=43.19 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..++|+|+.||||||++-.+.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999875543
No 338
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.11 E-value=1.3 Score=49.30 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=16.0
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+||||||||+.+...
T Consensus 3 ~~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHH
Confidence 46899999999999765443
No 339
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.05 E-value=0.89 Score=45.32 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.9
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|.|+.||||||++-...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999886543
No 340
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=75.79 E-value=0.9 Score=46.02 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999997653
No 341
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=75.78 E-value=0.94 Score=46.92 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++.+.|.||.||||||.+-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999986543
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.77 E-value=1.4 Score=42.92 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..+++.|+.||||||++-...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45688999999999999876543
No 343
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=75.68 E-value=2.3 Score=45.81 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.7
Q ss_pred eEEEEcCCCChHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~ 43 (901)
++-|.||+||||||.+-.
T Consensus 94 iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 789999999999988643
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.63 E-value=1.4 Score=41.87 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=16.1
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
.++|+|+.||||||+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5789999999999887544
No 345
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=75.54 E-value=0.96 Score=46.24 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999997653
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.54 E-value=1.4 Score=42.84 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=16.6
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.++|+|+.||||||+.-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999875543
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.49 E-value=1.2 Score=45.49 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCChHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+..+.|.|+.||||||++-.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456789999999999997643
No 348
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.40 E-value=2.4 Score=45.59 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILES 48 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~ 48 (901)
..+..++|.|++|||||+.+.+++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 456899999999999999888887764
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=75.38 E-value=1.2 Score=43.04 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=13.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
....++|+|+.||||||++-.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999987654
No 350
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=75.32 E-value=1 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++.+.|.||.||||||.+-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4688999999999999986543
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.30 E-value=1.5 Score=42.55 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+|+.||||||+.-.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999887554
No 352
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.17 E-value=2 Score=49.32 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHH
Q 046397 14 KNRLLTAISQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 14 q~~il~~i~~~~~viI~~~TGsGKTtq~ 41 (901)
.+.++.++..+..+++.||+|+|||+.+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3456666778899999999999999544
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=75.06 E-value=2.1 Score=46.50 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
++++.-+..+..++|.|++|+|||+.+.+++...+. .+..+.++-. -..+.++..|+
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl---Ems~~ql~~Rl 93 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL---EMSAEQLALRA 93 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES---SSCHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC---CCCHHHHHHHH
Confidence 344445567889999999999999999888876653 3334434332 23445666665
No 354
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.01 E-value=1.9 Score=48.73 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=36.2
Q ss_pred HHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHH
Q 046397 18 LTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVA 78 (901)
Q Consensus 18 l~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva 78 (901)
+.-+..+..++|.|++|+|||+.+.+++...+.. |..+.++. .-....|+..|+.
T Consensus 191 lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fS---lEms~~ql~~R~~ 245 (444)
T 3bgw_A 191 TYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHS---LEMGKKENIKRLI 245 (444)
T ss_dssp HSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEEC---SSSCTTHHHHHHH
T ss_pred cCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEE---CCCCHHHHHHHHH
Confidence 3334567899999999999999999988876542 33333332 2233445555653
No 355
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=74.98 E-value=1 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999998653
No 356
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.96 E-value=2.5 Score=47.09 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
..+..+.|.||+||||||.+.++++...
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 3578999999999999999888776544
No 357
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.92 E-value=3.1 Score=42.63 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...+++.||+|+|||+.+-.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999766443
No 358
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=74.92 E-value=1 Score=46.94 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999997653
No 359
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=74.87 E-value=1.9 Score=41.81 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.8
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
...+|+||+||||||.+-.
T Consensus 27 g~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp SEEEEEECTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 4789999999999976543
No 360
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.86 E-value=2.7 Score=40.17 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=18.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+.++.+.||.||||||.+-..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 67789999999999999766433
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.74 E-value=1.8 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
....+++.|++||||||++-...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999886554
No 362
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=74.72 E-value=1.8 Score=44.49 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
....++|.|+.||||||++-...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999998875543
No 363
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.64 E-value=3.6 Score=39.85 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=24.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
.++.|+|+.||||||.+...+- .+- .++..+.++..-|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~-~l~--~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA-AAV--REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH-HHH--HTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHH-hhH--hcCCeeeEEEeCCC
Confidence 5789999999999987766543 221 23444455554443
No 364
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.60 E-value=0.91 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++.+.|.||.||||||.+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4678899999999999986533
No 365
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.54 E-value=1.1 Score=46.28 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999998653
No 366
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=74.53 E-value=1.6 Score=44.11 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=16.8
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.+++.|+.||||||++-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886553
No 367
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.49 E-value=2.5 Score=45.97 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
..+..++|.|++|||||+.+.+++....
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999998888877643
No 368
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=74.44 E-value=1 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 467899999999999998653
No 369
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=74.15 E-value=1.6 Score=44.54 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..+++.|+.||||||++-...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 56689999999999999986544
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.99 E-value=1.9 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
...+++.|+.||||||++-...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999886543
No 371
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.94 E-value=2.3 Score=51.56 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.8
Q ss_pred CeEEEEcCCCChHHHHH
Q 046397 25 QVVIISGETGCGKTTQV 41 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~ 41 (901)
+-+++.||.|||||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999655
No 372
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=73.92 E-value=1.1 Score=46.91 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999998654
No 373
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=73.88 E-value=1.1 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++.+.|.||.||||||.+-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKI 48 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4688999999999999987543
No 374
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=73.79 E-value=1.5 Score=43.40 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.3
Q ss_pred eEEEEcCCCChHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~ 43 (901)
.+.|+|+.||||||..-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 588999999999987644
No 375
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=73.75 E-value=1.4 Score=41.69 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
....+|.||+|||||+.+-
T Consensus 23 ~g~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLD 41 (149)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3578999999999997643
No 376
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=73.67 E-value=3.3 Score=43.92 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
....+++.||+|||||+.+-..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHH
Confidence 4567999999999999765433
No 377
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.64 E-value=1.2 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+=
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 467899999999999998653
No 378
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=73.54 E-value=1.9 Score=42.63 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~i 45 (901)
++.+.|.||.||||||.+-...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 4578999999999998776543
No 379
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=73.53 E-value=3.1 Score=45.98 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=27.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRI 68 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~ 68 (901)
.+.+++|.|+|||||||.+-..+... .. .+ ..|++.-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~--~~--~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM--QG--SRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT--TT--CCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH--CC--CEEEEEeCCcC
Confidence 57789999999999998775555433 22 22 24556667655
No 380
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=73.52 E-value=1.2 Score=46.70 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+=
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHH
Confidence 467899999999999998653
No 381
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=73.41 E-value=1.2 Score=46.86 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999997653
No 382
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=73.38 E-value=2 Score=42.00 Aligned_cols=19 Identities=53% Similarity=0.812 Sum_probs=15.5
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
.+.|.||.||||||.+-..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l 20 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKI 20 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999876443
No 383
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=73.23 E-value=7.6 Score=42.81 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=17.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~il 46 (901)
..+-.+++.|++|+|||+.+ ..+.
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA-r~ih 181 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA-RLIH 181 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH-HHHH
T ss_pred CCCCCeEEecCCCcCHHHHH-HHHH
Confidence 34567899999999999643 4443
No 384
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.17 E-value=3.1 Score=48.04 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.0
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHh
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQFILESEIT 51 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~ 51 (901)
.+..+..+.|.||+||||||.+-++++.-+..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 44578999999999999999998876655544
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.11 E-value=2.4 Score=45.78 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+++.||+|+||||.+-.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 67999999999999776444
No 386
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=72.80 E-value=3.2 Score=45.21 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
+..+..++|.|++||||||.+.+++....
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999888887654
No 387
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=72.77 E-value=2 Score=41.43 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.0
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
.++|.|+.||||||..-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999876544
No 388
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=72.71 E-value=1.3 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 467899999999999998653
No 389
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=72.62 E-value=1.2 Score=46.94 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 467899999999999998653
No 390
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=72.17 E-value=1.9 Score=42.34 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.4
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..+.|+|++||||||..-.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999877443
No 391
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=72.16 E-value=1.3 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.778 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999998653
No 392
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.00 E-value=3.5 Score=45.08 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.0
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
..+..++|.|++|+||||.+.+++.+..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999988887654
No 393
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.99 E-value=1.7 Score=43.56 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+.|+|+.||||||+.-.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 347899999999999877543
No 394
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=71.97 E-value=1.3 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 467899999999999998653
No 395
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.84 E-value=3.4 Score=44.87 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=20.4
Q ss_pred HHHHHHcC----CeEEEEcCCCChHHHHHHHHH
Q 046397 17 LLTAISQN----QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 17 il~~i~~~----~~viI~~~TGsGKTtq~p~~i 45 (901)
+...+..+ +.+++.||+|+|||+.+-.+.
T Consensus 59 l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 59 VLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp HHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34444443 479999999999997665443
No 396
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=71.83 E-value=1.8 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...++++|+.||||||++-..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHH
Confidence 457899999999999887554
No 397
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=71.81 E-value=2.3 Score=41.49 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~il 46 (901)
-..++|+|++||||||.+...+-
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 36789999999999987766543
No 398
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=71.46 E-value=3.9 Score=47.45 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=29.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRR 67 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr 67 (901)
+...++|.|.||||||+.+-.+|+..+.. .....++++++-|..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~-~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFK-STPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTT-CCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHh-CCCcceEEEEeCCCh
Confidence 35789999999999997776666654432 222345666665653
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=71.38 E-value=2.3 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..++|.|+.||||||..-..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 899999999999999886544
No 400
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=71.30 E-value=2.1 Score=42.43 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=15.8
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
++.|.|+.||||||..-.+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999877544
No 401
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.01 E-value=3.6 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...+++.||+|+|||+.+-.+
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 568999999999999766544
No 402
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.72 E-value=2.5 Score=46.21 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=22.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
.+..++|.||+||||||.+.+++....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999998888876543
No 403
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.62 E-value=1.7 Score=44.66 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=15.9
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
+.+++.||+||||||.+-..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 34899999999999766443
No 404
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=70.55 E-value=1.8 Score=44.73 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+.++.|.||+||||||.+-..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999876443
No 405
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.49 E-value=2 Score=43.17 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=15.9
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
+.+++.||.|+|||+.+..
T Consensus 59 n~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp SEEEEESCGGGCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4799999999999977633
No 406
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.37 E-value=3.6 Score=47.16 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 15 NRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 15 ~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
++++.-+..+..++|.|++|+|||+.+.+++.+.+.. .+..+.++-+ -....++..|+
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~---E~s~~~l~~r~ 290 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAML---EESVEETAEDL 290 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEES---SSCHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEec---cCCHHHHHHHH
Confidence 3444445678899999999999999999988875532 1344444433 23345666665
No 407
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=70.30 E-value=1.5 Score=48.01 Aligned_cols=21 Identities=38% Similarity=0.806 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr 48 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLR 48 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHH
Confidence 467899999999999997653
No 408
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=70.19 E-value=2.9 Score=47.21 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHH
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERV 77 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rv 77 (901)
+++.-+..+..++|.|++|+|||+.+.+++...+.. .+..+.++-+. ....++..|+
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE---~~~~~l~~R~ 248 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE---MPAAQLTLRM 248 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS---SCHHHHHHHH
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC---CCHHHHHHHH
Confidence 333335567899999999999999988888765532 23334333332 3344666665
No 409
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=70.15 E-value=2.1 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..+..+-|.||.||||||.+-.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 346678899999999999876543
No 410
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=69.91 E-value=1.6 Score=46.42 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=17.5
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||.||||||.+-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 356789999999999998653
No 411
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=69.80 E-value=5.1 Score=48.58 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=62.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecc-hhhcccCCCCeEE
Q 046397 286 PGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATN-IAETSITINDVVF 364 (901)
Q Consensus 286 ~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTn-iaetGIdIp~V~~ 364 (901)
+.+++|.+|++.-+...++.+..... ...+.+..+||+++..++..+++....|..+|||+|. .+...+.+.++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~---~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~l 493 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFS---KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 493 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHT---CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhh---hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCce
Confidence 46899999999988888887765421 1235578899999999999888888889999999996 4455678888888
Q ss_pred EE
Q 046397 365 VI 366 (901)
Q Consensus 365 VI 366 (901)
||
T Consensus 494 VV 495 (780)
T 1gm5_A 494 VI 495 (780)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 412
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=69.61 E-value=1.9 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
+..+..+.|.||+||||||.+-.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHH
Confidence 34567899999999999987643
No 413
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=69.44 E-value=2.5 Score=45.42 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
.+..++|.||+|+|||+.+.+++.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899999999999988887664
No 414
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=69.43 E-value=3.6 Score=49.70 Aligned_cols=37 Identities=27% Similarity=0.562 Sum_probs=27.4
Q ss_pred hcCCC--cHHHHHHHHHHH---HcCCeEEEEcCCCChHHHHH
Q 046397 5 RRNLP--AYKEKNRLLTAI---SQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 5 r~~LP--i~~~q~~il~~i---~~~~~viI~~~TGsGKTtq~ 41 (901)
+..+| ||+.-+.....+ ..+|.+||+|++|+|||...
T Consensus 116 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 116 LGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 34566 566666666665 46899999999999999543
No 415
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=69.26 E-value=16 Score=46.25 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=25.1
Q ss_pred HHHHHHHHHH----cCCeEEEEcCCCChHHHHHHHHHHH
Q 046397 13 EKNRLLTAIS----QNQVVIISGETGCGKTTQVPQFILE 47 (901)
Q Consensus 13 ~q~~il~~i~----~~~~viI~~~TGsGKTtq~p~~ile 47 (901)
..+++.+.+. ..+++.|+|+-|.||||.+.++..+
T Consensus 132 ~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 132 LVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred HHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3455666662 3457889999999999888766544
No 416
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=69.18 E-value=2.9 Score=42.20 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
++..+++.|+.|||||||+-..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999998654
No 417
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=68.85 E-value=2.6 Score=42.54 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..+++.|+.|||||||+-...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 56788999999999999986543
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=68.79 E-value=2.2 Score=43.56 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=17.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
+..+..+++.|+.|||||||+-...
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999987643
No 419
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=68.64 E-value=3 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..+++.|+.|||||||+-...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999986643
No 420
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=68.60 E-value=1.7 Score=47.94 Aligned_cols=21 Identities=33% Similarity=0.778 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+-
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLR 47 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHH
Confidence 467899999999999998653
No 421
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=68.34 E-value=1.7 Score=47.47 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILR 59 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 467899999999999998653
No 422
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=68.34 E-value=2.5 Score=44.78 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=15.8
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
..+.|+|++||||||.+-.
T Consensus 32 ~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4788999999999987643
No 423
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.26 E-value=5.6 Score=40.46 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecc
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQP 65 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqP 65 (901)
++++.++.|+||||.+........ ..|..+.++.+-|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~---~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL---RQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---HCCCCEEEEEeCC
Confidence 588999999999998777665543 2455666777656
No 424
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=68.20 E-value=3.1 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=19.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
..+..+++.|+.|||||||+-...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999886554
No 425
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=68.20 E-value=2.1 Score=46.95 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=15.8
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
...+|+|||||||||.+-.
T Consensus 24 g~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3778999999999987643
No 426
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=67.43 E-value=1.8 Score=44.52 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.. ..+.|.||.||||||.+-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~ 43 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLEL 43 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHH
Confidence 35 7889999999999986643
No 427
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=67.31 E-value=1.9 Score=47.23 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLL 47 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 467899999999999998653
No 428
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=67.31 E-value=2.1 Score=47.02 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
....+|+||||+|||+.+-
T Consensus 25 ~gl~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFE 43 (371)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3578999999999997643
No 429
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.29 E-value=2.9 Score=41.38 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
+-++.|+|+.||||||..-.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346789999999999887554
No 430
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.28 E-value=2.3 Score=44.17 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCChHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~ 43 (901)
+...++|.|+.||||||++-.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456789999999999998843
No 431
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=67.14 E-value=1.9 Score=47.27 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLY 47 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHH
Confidence 467899999999999998653
No 432
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=66.95 E-value=11 Score=44.66 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=47.1
Q ss_pred cCCCcHHHHHHHHH----HHHcCC-eEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397 6 RNLPAYKEKNRLLT----AISQNQ-VVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE 80 (901)
Q Consensus 6 ~~LPi~~~q~~il~----~i~~~~-~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e 80 (901)
..++...+|.+.+. .+.++. ..++.|-||||||..+...+.+. + . .++|+.|...+|.++++.+...
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~--~--~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----N--K--PTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----C--C--CEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----C--C--CEEEEECCHHHHHHHHHHHHHH
Confidence 34455566655554 444453 46788999999997666544321 1 1 2555569999999999999888
Q ss_pred hCC
Q 046397 81 RGE 83 (901)
Q Consensus 81 ~~~ 83 (901)
++.
T Consensus 81 ~~~ 83 (661)
T 2d7d_A 81 FPN 83 (661)
T ss_dssp CTT
T ss_pred cCC
Confidence 754
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.91 E-value=2.1 Score=44.22 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++++|+.||||||.+-..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999877554
No 434
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.86 E-value=6 Score=54.84 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=35.5
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHH
Q 046397 17 LLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVS 74 (901)
Q Consensus 17 il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva 74 (901)
+.+.+..+.-++++||||||||+..- +|..++..-.+....+.++-|.-+...+++
T Consensus 899 Lye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l~~~~~~~~~iNPKait~~eLy 954 (3245)
T 3vkg_A 899 LHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQVDNIKSEAHVMDPKAITKDQLF 954 (3245)
T ss_dssp HHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTTTTCEEEEEEECTTTSCHHHHH
T ss_pred HHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHhhCCCceEEEECCCCCchhhhc
Confidence 44455667789999999999997653 223333333344556667778765544433
No 435
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=66.77 E-value=5.6 Score=41.40 Aligned_cols=39 Identities=3% Similarity=0.049 Sum_probs=29.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEec
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQ 64 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~Ilvtq 64 (901)
.+..++|.|.+|+|||+...||+.+.+ .+|..|.++-..
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~---~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKL---KSDNLVGMFSIS 58 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHH---HTTCEEEEEECS
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHH---HCCCcEEEEEEe
Confidence 567889999999999999999998765 245566555443
No 436
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=66.71 E-value=1.8 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr 44 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLE 44 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHH
Confidence 467899999999999997653
No 437
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=66.65 E-value=2 Score=44.98 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
++.+.|.||.||||||.+-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp SSEEEEECCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 7889999999999998653
No 438
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=66.54 E-value=3.6 Score=41.01 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFILES 48 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~ 48 (901)
..+++|+.|||||+.+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999998876666554
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.36 E-value=3 Score=43.97 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ 44 (901)
..++|+|+.||||||++-..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36899999999999987554
No 440
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.31 E-value=2.4 Score=44.36 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.5
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
+.++|.||+||||||.+-.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHH
Confidence 3489999999999976643
No 441
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=66.29 E-value=3.9 Score=45.67 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=16.0
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
..+.|.|++|+||||.+=.
T Consensus 70 ~~valvG~nGaGKSTLln~ 88 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINT 88 (413)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3899999999999987643
No 442
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=66.15 E-value=2.3 Score=46.35 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFILES 48 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ile~ 48 (901)
..+..+.|.||.||||||.+.+++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999888877653
No 443
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=66.14 E-value=3.2 Score=43.79 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=16.1
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.+++.||+|+|||+.+-.+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHH
Confidence 59999999999997664443
No 444
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=66.10 E-value=6.1 Score=54.21 Aligned_cols=53 Identities=17% Similarity=0.413 Sum_probs=32.5
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHH
Q 046397 16 RLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISA 70 (901)
Q Consensus 16 ~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la 70 (901)
++.+.+..+..++++||||||||+.+- .+.+. +..-.+....+.++-|.-+..
T Consensus 915 ql~e~~~~r~gvmlvGptgsGKTt~~~-~La~a-l~~l~~~~~~~~~inpk~~t~ 967 (2695)
T 4akg_A 915 QFYYMQKTQQALILVGKAGCGKTATWK-TVIDA-MAIFDGHANVVYVIDTKVLTK 967 (2695)
T ss_dssp HHHHHHHHCSEEEEECSTTSSHHHHHH-HHHHH-HHHHTCCEEEEEEECTTTSCH
T ss_pred HHHHHHHhcceEEEECCCCCCHHHHHH-HHHHH-HHHhcCCCceEEEeCCCCCCH
Confidence 344566778899999999999997653 33322 222233444555565764433
No 445
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=65.75 E-value=2.1 Score=47.11 Aligned_cols=21 Identities=33% Similarity=0.797 Sum_probs=17.8
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLR 55 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 467899999999999998653
No 446
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=65.58 E-value=2.1 Score=47.13 Aligned_cols=21 Identities=38% Similarity=0.808 Sum_probs=17.9
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLR 47 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHH
Confidence 467899999999999998653
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=65.44 E-value=2.6 Score=43.06 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
+..++|.|..||||||++-..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 346899999999999987543
No 448
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.34 E-value=4.5 Score=45.96 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=20.8
Q ss_pred HHHHHH--HcCCeEEEEcCCCChHHHHHHHH
Q 046397 16 RLLTAI--SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 16 ~il~~i--~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
.++..+ ....++++.||+|+|||+.+-.+
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 345555 34568999999999999766443
No 449
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=65.27 E-value=2.7 Score=46.63 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=18.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..+..+.|.||+||||||.+-.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~ 66 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSA 66 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHH
Confidence 4678999999999999987643
No 450
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=64.86 E-value=5 Score=48.67 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=14.2
Q ss_pred CeEEEEcCCCChHHHHH
Q 046397 25 QVVIISGETGCGKTTQV 41 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~ 41 (901)
+-+++.||.|||||+.+
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 46899999999999544
No 451
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=64.74 E-value=7 Score=49.88 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=43.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhc-------CCCeeEEEEecchHHHHHHHHHHHHHHhC
Q 046397 26 VVIISGETGCGKTTQVPQFILESEITSV-------RGAVCSIICTQPRRISAMSVSERVASERG 82 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ile~~~~~~-------~~~~~~IlvtqPrr~la~qva~rva~e~~ 82 (901)
..+|.|.-|||||+.+..-++..+...+ .-..-.|+|+.=|+.+|.++.+||.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 4499999999999888877777665322 11234688888999999999999987653
No 452
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=64.48 E-value=2.9 Score=41.57 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.3
Q ss_pred EEEEcCCCChHHHHHHHH
Q 046397 27 VIISGETGCGKTTQVPQF 44 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~~ 44 (901)
+++.|.-|||||||+-..
T Consensus 3 I~~EG~DGsGKsTq~~~L 20 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578899999999998653
No 453
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=64.35 E-value=2.8 Score=44.03 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=15.4
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
+-+++.||.||||||.+-.
T Consensus 45 ~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp SEEEEESSTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 3489999999999976543
No 454
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=63.86 E-value=2.4 Score=46.45 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHH
Confidence 467899999999999998753
No 455
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=63.71 E-value=4.2 Score=41.59 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..-++.|.||+||||||..-..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4458999999999999877544
No 456
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=63.65 E-value=3.6 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
..++.++|.||+||||||.+-...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999998765443
No 457
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=63.65 E-value=6.1 Score=44.64 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=20.1
Q ss_pred HHHHHHcC----CeEEEEcCCCChHHHHHHHH
Q 046397 17 LLTAISQN----QVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 17 il~~i~~~----~~viI~~~TGsGKTtq~p~~ 44 (901)
+++.+..+ +.+++.||+|+|||+.+-..
T Consensus 52 ~~~~~~~~~~~~~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 52 IVELIKSKKMAGRAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEEECCCcCCHHHHHHHH
Confidence 44555443 57999999999999766433
No 458
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=63.52 E-value=3.8 Score=44.90 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.4
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~ 43 (901)
...+++.||+|+|||+.+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 46799999999999966543
No 459
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=63.51 E-value=3.6 Score=42.30 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.0
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
++.|+|+.||||||..-.+
T Consensus 24 iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999877543
No 460
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.45 E-value=3.4 Score=44.41 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=16.1
Q ss_pred cCCeEEEEcCCCChHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p 42 (901)
....+++.||+|+|||+.+-
T Consensus 44 ~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHH
T ss_pred CCceEEEECCCCccHHHHHH
Confidence 34569999999999996553
No 461
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=63.36 E-value=2.4 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.409 Sum_probs=18.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
+..+.+++|.|+.||||||..-.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~ 388 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARA 388 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHH
Confidence 34678999999999999986543
No 462
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=63.30 E-value=1.8 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.416 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..+..+.|.||.||||||.+=
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr 49 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMR 49 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHH
Confidence 467899999999999998653
No 463
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=63.04 E-value=7.1 Score=43.96 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
.+.+++.||+|+|||+.+-.+
T Consensus 167 ~~~vLL~GppGtGKT~lA~ai 187 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAV 187 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 367999999999999766443
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=63.04 E-value=3.9 Score=40.25 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=16.2
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~ 44 (901)
++.|.|+.||||||..-..
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7889999999999877544
No 465
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=62.89 E-value=2.5 Score=49.49 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=17.6
Q ss_pred HcCCeEEEEcCCCChHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~ 41 (901)
..++.+.|+||+||||||.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 46789999999999999865
No 466
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.89 E-value=6.9 Score=45.09 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPR 66 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPr 66 (901)
+..+..+.|.|++||||||.+-+++-... ..|..+..+..+.+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENAC---ANKERAILFAYEES 320 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEESSSC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCCCEEEEEEeCC
Confidence 45788999999999999998887765432 23444444444433
No 467
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=62.84 E-value=3.7 Score=43.20 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~i 45 (901)
..+.|+|+.||||||+.-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999876554
No 468
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=62.82 E-value=3.1 Score=41.00 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=16.7
Q ss_pred HcCCeEEEEcCCCChHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~ 41 (901)
..+..+++.|++|+||||.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35667999999999999765
No 469
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=62.73 E-value=3.2 Score=43.48 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=15.9
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
++.|.||+||||||.+=...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999998765443
No 470
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=62.49 E-value=4.4 Score=43.45 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFILESE 49 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~ile~~ 49 (901)
.+ .+.|.||+||||||...+++.+..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 35 789999999999999999987755
No 471
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=62.38 E-value=5.8 Score=42.25 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=17.7
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..+..+.|.|++||||||.+-.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456888999999999987643
No 472
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=62.37 E-value=6.4 Score=42.09 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=30.1
Q ss_pred cCCCcHHHHHHHHHHHHc----------------CCeEEEEcCCCChHHHHHHHHHH
Q 046397 6 RNLPAYKEKNRLLTAISQ----------------NQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 6 ~~LPi~~~q~~il~~i~~----------------~~~viI~~~TGsGKTtq~p~~il 46 (901)
.+.+-+..-.++...+.+ +.-+++.|+.|+||||.+..++-
T Consensus 110 T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 110 SKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp CCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 344555556666666665 77899999999999988876653
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=62.34 E-value=4.2 Score=39.62 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFIL 46 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~il 46 (901)
.+.-+++.|+.|+||||.+..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356789999999999998877654
No 474
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=62.08 E-value=4 Score=40.77 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.3
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
+-+++.|.-|||||||+-.
T Consensus 3 kFI~~EG~dGsGKsTq~~~ 21 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINE 21 (205)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578999999999999854
No 475
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=61.99 E-value=18 Score=36.18 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=54.3
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecch-----h-hcc
Q 046397 283 KERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNI-----A-ETS 356 (901)
Q Consensus 283 ~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTni-----a-etG 356 (901)
......+||.+|+++-+...++.+...... .....+..++|+.+..++...++ ...|+|+|.- . ...
T Consensus 89 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 89 ENLSTQILILAPTREIAVQIHSVITAIGIK--MEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTT--STTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTS
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHHhcc--cCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCC
Confidence 344579999999999999998888764321 11345778899999888777654 3679999972 1 234
Q ss_pred cCCCCeEEEE
Q 046397 357 ITINDVVFVI 366 (901)
Q Consensus 357 IdIp~V~~VI 366 (901)
++..++.+||
T Consensus 162 ~~~~~~~~lV 171 (230)
T 2oxc_A 162 LNPGSIRLFI 171 (230)
T ss_dssp SCGGGCCEEE
T ss_pred cccccCCEEE
Confidence 5667776665
No 476
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=61.88 E-value=4.3 Score=40.37 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
....+|.||+||||||.+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHH
Confidence 3578999999999997753
No 477
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=61.85 E-value=8.7 Score=46.41 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=37.7
Q ss_pred eccCCceEEEEEEcCeeeeccCCCchhhHHHHHHHHHHHHHhc
Q 046397 835 QLKNGQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG 877 (901)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (901)
+-++..|+|.+++-+.+-+-.+++.||-||..||-.|+.-|--
T Consensus 53 ~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~g~ 95 (950)
T 3htx_A 53 QKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLGI 95 (950)
T ss_dssp CCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTTTS
T ss_pred CCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHHhCC
Confidence 3344579999999999999999999999999999999887654
No 478
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=61.46 E-value=7.4 Score=42.96 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=58.6
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCCCCCCeEEEEecchhh----cccCC
Q 046397 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAE----TSITI 359 (901)
Q Consensus 284 ~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniae----tGIdI 359 (901)
..++.+||.+|+++-+...++.+..... ..+.+..+||+.+..++...++....|...|+|+|+-.- .-+..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD----EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC----SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc----CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 4567999999999999999999987422 345688999999997776666666667789999996221 12455
Q ss_pred CCeEEEE
Q 046397 360 NDVVFVI 366 (901)
Q Consensus 360 p~V~~VI 366 (901)
.++.+||
T Consensus 138 ~~~~~iV 144 (414)
T 3oiy_A 138 KRFDFVF 144 (414)
T ss_dssp CCCSEEE
T ss_pred ccccEEE
Confidence 5677666
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.20 E-value=5.1 Score=41.34 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~~ 44 (901)
...+++.||+|+|||+.+-.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 456899999999999766443
No 480
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=61.14 E-value=6.3 Score=46.90 Aligned_cols=36 Identities=42% Similarity=0.653 Sum_probs=25.8
Q ss_pred cCCC--cHHHHHHHHHHH---HcCCeEEEEcCCCChHHHHH
Q 046397 6 RNLP--AYKEKNRLLTAI---SQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 6 ~~LP--i~~~q~~il~~i---~~~~~viI~~~TGsGKTtq~ 41 (901)
..+| ||+.-+.....+ .++|.+||+|++|+|||...
T Consensus 71 ~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 71 YEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 3454 455555655555 46899999999999999554
No 481
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=60.81 E-value=14 Score=40.07 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=26.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHH
Q 046397 25 QVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRI 68 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~ 68 (901)
.+++|+|++|+||||.+-.++.... ..|..+.++-.-|+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~---~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI---ERGHRVAVLAVDPSST 120 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---hCCCceEEEecCCCCC
Confidence 3789999999999998877665432 3455566666656544
No 482
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=60.80 E-value=3.1 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=19.7
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHH
Q 046397 20 AISQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 20 ~i~~~~~viI~~~TGsGKTtq~p~ 43 (901)
.+..+..+.|.||+||||||.+=.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~ 157 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRT 157 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHH
T ss_pred EeCCCCEEEEECCCCCCHHHHHHH
Confidence 345789999999999999986543
No 483
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=60.50 E-value=2.9 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++.+.|.||+||||||.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999987643
No 484
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=60.42 E-value=2.9 Score=49.04 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|+||+||||||.+-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999998663
No 485
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=60.25 E-value=6.7 Score=47.16 Aligned_cols=39 Identities=28% Similarity=0.534 Sum_probs=27.1
Q ss_pred hcCCC--cHHHHHHHHHHH---HcCCeEEEEcCCCChHHHHHHH
Q 046397 5 RRNLP--AYKEKNRLLTAI---SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 5 r~~LP--i~~~q~~il~~i---~~~~~viI~~~TGsGKTtq~p~ 43 (901)
|..+| ||+.-+.....+ ..+|.+||+|++|+|||...-.
T Consensus 148 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~ 191 (770)
T 1w9i_A 148 RNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKK 191 (770)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHH
Confidence 34555 455555555555 4688999999999999966443
No 486
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=60.13 E-value=5.1 Score=37.13 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.4
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.+++.|++|+|||+.+-.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999998765554
No 487
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=59.71 E-value=5.7 Score=42.23 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 046397 21 ISQNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 21 i~~~~~viI~~~TGsGKTtq~p~~i 45 (901)
+..++.+.+.||+|+||||.+=..+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999998765543
No 488
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=59.65 E-value=2.7 Score=49.44 Aligned_cols=21 Identities=48% Similarity=0.578 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCChHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p 42 (901)
..++.+.|.||+||||||.+-
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 467899999999999998763
No 489
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=59.63 E-value=5.2 Score=44.98 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~ 43 (901)
...+++.||+|||||+.+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36799999999999976643
No 490
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=59.53 E-value=3.7 Score=44.47 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCChHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVP 42 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p 42 (901)
....+|+||+|||||+.+-
T Consensus 23 ~~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3578999999999998754
No 491
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=59.48 E-value=5.3 Score=36.97 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=16.3
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.+++.|++|+||||.+-.++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999998765554
No 492
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=59.42 E-value=4.9 Score=40.79 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 046397 23 QNQVVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 23 ~~~~viI~~~TGsGKTtq~p~~i 45 (901)
.+..+++.|+.||||||++-...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999976543
No 493
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=59.34 E-value=5.6 Score=40.33 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQF 44 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~~ 44 (901)
..+..+.|.|+.||||||..-.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 34568999999999999876543
No 494
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=59.09 E-value=6.5 Score=48.95 Aligned_cols=37 Identities=27% Similarity=0.562 Sum_probs=27.2
Q ss_pred hcCCC--cHHHHHHHHHHH---HcCCeEEEEcCCCChHHHHH
Q 046397 5 RRNLP--AYKEKNRLLTAI---SQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 5 r~~LP--i~~~q~~il~~i---~~~~~viI~~~TGsGKTtq~ 41 (901)
|..+| ||+..+.+...+ ..+|.+||+|++|||||...
T Consensus 120 ~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 120 LGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp BTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 34455 566666666665 36889999999999999654
No 495
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=58.77 E-value=4.1 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=18.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 046397 22 SQNQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 22 ~~~~~viI~~~TGsGKTtq~p~ 43 (901)
..++.+.|.||+||||||.+-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 5788999999999999987644
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=58.73 E-value=5.2 Score=39.14 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=16.5
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 046397 27 VIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 27 viI~~~TGsGKTtq~p~~i 45 (901)
++|.|++|||||+.+.++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999998877765
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=58.57 E-value=4.3 Score=47.10 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 046397 24 NQVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 24 ~~~viI~~~TGsGKTtq~p~ 43 (901)
+..+++.||+||||||.+-.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 67899999999999976543
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=58.26 E-value=4 Score=43.81 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.1
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 046397 25 QVVIISGETGCGKTTQVPQ 43 (901)
Q Consensus 25 ~~viI~~~TGsGKTtq~p~ 43 (901)
++++|+|+.||||||.+-.
T Consensus 5 ~v~~i~G~~GaGKTTll~~ 23 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRH 23 (318)
T ss_dssp EEEEEEESSSSSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHH
Confidence 4789999999999987644
No 499
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=57.72 E-value=7.4 Score=46.93 Aligned_cols=37 Identities=30% Similarity=0.590 Sum_probs=27.0
Q ss_pred hcCCC--cHHHHHHHHHHH---HcCCeEEEEcCCCChHHHHH
Q 046397 5 RRNLP--AYKEKNRLLTAI---SQNQVVIISGETGCGKTTQV 41 (901)
Q Consensus 5 r~~LP--i~~~q~~il~~i---~~~~~viI~~~TGsGKTtq~ 41 (901)
|..+| ||+.-+.....+ ..+|.+||+|+.|+|||...
T Consensus 147 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 147 RSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 34555 556666666665 36889999999999999654
No 500
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=57.61 E-value=6 Score=36.88 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=16.3
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 046397 26 VVIISGETGCGKTTQVPQFI 45 (901)
Q Consensus 26 ~viI~~~TGsGKTtq~p~~i 45 (901)
.+++.|++|+||||.+-.++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57899999999998765544
Done!