BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046398
(794 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 179/650 (27%), Positives = 273/650 (42%), Gaps = 108/650 (16%)
Query: 91 RYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS 150
R E+ D + S + P L D L HLD+SGN G + + + L+ LN+S
Sbjct: 198 RCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNIS 255
Query: 151 GAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSA 209
+F G IP L +L+ L L+ +++ +G+IP+ L G +L LDLS
Sbjct: 256 SNQFVGPIPPL--PLKSLQYLSLAENKF----------TGEIPDFLSGACDTLTGLDLSG 303
Query: 210 NKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTS 269
N F + + LE L+LSSN G + L + +K +DLS N E G +P S
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES 362
Query: 270 FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ--FK 327
L +++L +L SS+ SG + L Q
Sbjct: 363 LTNL----------------------------SASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 328 SLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKM 387
+L+ L L +N +G +PP N L+G+IP SLG +S L L L N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 388 NGTL-SEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS 446
G + E+ +V L+TL+L L + PS L +
Sbjct: 455 EGEIPQELMYVK--------------------------TLETLILDFNDLTGEIPSGLSN 488
Query: 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTW 506
NL+ + +SN R L+G IP+ NL +L L +N F G IP
Sbjct: 489 CTNLNWISLSNNR---------------LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 507 MGEGFTSLLILILRSNKFDGFLPIQLCR---------LTSLQILDVANNSLSGTMPGCVN 557
+G+ SL+ L L +N F+G +P + + + + + + N+ + G N
Sbjct: 534 LGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 558 NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN 617
S Q N +S T C + S V G + +D+S N
Sbjct: 593 LLEFQGI--RSEQLNRLS----TRNPCNI---TSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 618 FSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXX 677
SG IP E+ + L LNL HN +G IP+ +G+L + LD S+N+
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 678 XXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENNA 726
+++SNN L+G IP Q ++F + F+ N LCG PLP C +NA
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 134/502 (26%), Positives = 210/502 (41%), Gaps = 90/502 (17%)
Query: 200 TSLRHLDLSANKFNS--TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
SL LDLS N + TT L + L+FL++SSN L G L S++ +DLS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 258 LNFELGGPIPTSFVR--LCELTSIDVSDVKLSQDLS-------QVLDI-----------L 297
N G + + EL + +S K+S D+ + LD+ L
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 298 SACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXX 357
C SAL+ L S +++SG + + L+ L++ N GP+PP
Sbjct: 220 GDC--SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------ 265
Query: 358 XXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVN 417
+PL L+YL L+ NK G + + LT SGN V
Sbjct: 266 ---------LPL-----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 418 PNWVPPFQLKTLLLMSCHLGPQFP-SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLS 476
P + L++L L S + + P L + L VLD+ S + S
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL---------------SFNEFS 356
Query: 477 GIIPESFKNFS-NLEVLNLGDNEFVGKI-PTWMGEGFTSLLILILRSNKFDGFLPIQLCR 534
G +PES N S +L L+L N F G I P +L L L++N F G +P L
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 535 LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV- 593
+ L L ++ N LSGT+P + + S + + + + E+ ++ V
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK----------LWLNMLEGEIPQELMYVK 466
Query: 594 -MKGSMVEYNSILNLV----------RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIF 642
++ ++++N + + I +S N +GEIP + L L L LS+N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 643 TGQIPENIGNLISIESLDFSTN 664
+G IP +G+ S+ LD +TN
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTN 548
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 179/650 (27%), Positives = 273/650 (42%), Gaps = 108/650 (16%)
Query: 91 RYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS 150
R E+ D + S + P L D L HLD+SGN G + + + L+ LN+S
Sbjct: 195 RCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNIS 252
Query: 151 GAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSA 209
+F G IP L +L+ L L+ +++ +G+IP+ L G +L LDLS
Sbjct: 253 SNQFVGPIPPL--PLKSLQYLSLAENKF----------TGEIPDFLSGACDTLTGLDLSG 300
Query: 210 NKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTS 269
N F + + LE L+LSSN G + L + +K +DLS N E G +P S
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES 359
Query: 270 FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ--FK 327
L +++L +L SS+ SG + L Q
Sbjct: 360 LTNL----------------------------SASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 328 SLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKM 387
+L+ L L +N +G +PP N L+G+IP SLG +S L L L N +
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 388 NGTL-SEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS 446
G + E+ +V L+TL+L L + PS L +
Sbjct: 452 EGEIPQELMYVK--------------------------TLETLILDFNDLTGEIPSGLSN 485
Query: 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTW 506
NL+ + +SN R L+G IP+ NL +L L +N F G IP
Sbjct: 486 CTNLNWISLSNNR---------------LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 507 MGEGFTSLLILILRSNKFDGFLPIQLCR---------LTSLQILDVANNSLSGTMPGCVN 557
+G+ SL+ L L +N F+G +P + + + + + + N+ + G N
Sbjct: 531 LGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 558 NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN 617
S Q N +S T C + S V G + +D+S N
Sbjct: 590 LLEFQGI--RSEQLNRLS----TRNPCNI---TSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 618 FSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXX 677
SG IP E+ + L LNL HN +G IP+ +G+L + LD S+N+
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 678 XXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENNA 726
+++SNN L+G IP Q ++F + F+ N LCG PLP C +NA
Sbjct: 701 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 750
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 134/502 (26%), Positives = 210/502 (41%), Gaps = 90/502 (17%)
Query: 200 TSLRHLDLSANKFNS--TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
SL LDLS N + TT L + L+FL++SSN L G L S++ +DLS
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 258 LNFELGGPIPTSFVR--LCELTSIDVSDVKLSQDLS-------QVLDI-----------L 297
N G + + EL + +S K+S D+ + LD+ L
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 298 SACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXX 357
C SAL+ L S +++SG + + L+ L++ N GP+PP
Sbjct: 217 GDC--SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------ 262
Query: 358 XXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVN 417
+PL L+YL L+ NK G + + LT SGN V
Sbjct: 263 ---------LPL-----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 418 PNWVPPFQLKTLLLMSCHLGPQFP-SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLS 476
P + L++L L S + + P L + L VLD+ S + S
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL---------------SFNEFS 353
Query: 477 GIIPESFKNFS-NLEVLNLGDNEFVGKI-PTWMGEGFTSLLILILRSNKFDGFLPIQLCR 534
G +PES N S +L L+L N F G I P +L L L++N F G +P L
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 535 LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV- 593
+ L L ++ N LSGT+P + + S + + + + E+ ++ V
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK----------LWLNMLEGEIPQELMYVK 463
Query: 594 -MKGSMVEYNSILNLV----------RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIF 642
++ ++++N + + I +S N +GEIP + L L L LS+N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 643 TGQIPENIGNLISIESLDFSTN 664
+G IP +G+ S+ LD +TN
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTN 545
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 16/253 (6%)
Query: 479 IPESFKNFSNLEVLNLGD-NEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTS 537
IP S N L L +G N VG IP + + T L L + G +P L ++ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 538 LQILDVANNSLSGTMPGCVNNFSAMA--TIDSSHQSNAM--SYFEVTAYDCEVLEDASIV 593
L LD + N+LSGT+P +++ + T D + S A+ SY + ++ +I
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS----KLFTSMTIS 182
Query: 594 ---MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI 650
+ G + + LNL +D+S+N G+ + + Q ++L+ N + + +
Sbjct: 183 RNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V 240
Query: 651 GNLISIESLDFSTNQXXXXXXXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVG 710
G ++ LD N+ + LNVS N L G+IP LQ FD S +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
Query: 711 NN-LCGPPLPSCT 722
N LCG PLP+CT
Sbjct: 301 NKCLCGSPLPACT 313
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 63/330 (19%)
Query: 31 CTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCK--WAEVVCSNLTG-------HVLQLS 81
C +++ALL++K+DL +P+ L SW+ DCC W V+C T + L+
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 82 LRNPFRNDLRYATTEYEDYMR----SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKY 137
L P+ A Y +++ + L G + P++ L L +L ++ + G IP +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDF 120
Query: 138 LGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197
L +K L L+ S +G +P + +L NL + + +SG IP+ G
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR----------ISGAIPDSYG 170
Query: 198 NLTSL-RHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI--GLENLTSIKTI 254
+ + L + +S N+ + N L F+ LS N L+G S + +N I
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 255 DLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ 314
SL F+LG V LS++L+ L +++
Sbjct: 230 KNSLAFDLG-------------------KVGLSKNLN---------------GLDLRNNR 255
Query: 315 ISGHLTSQLGQFKSLRTLSLDDNCISGPLP 344
I G L L Q K L +L++ N + G +P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 106/270 (39%), Gaps = 52/270 (19%)
Query: 251 IKTIDLS-LNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGA-SALESL 308
+ +DLS LN PIP+S L L + + + + V I A + L L
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGPIPPAIAKLTQLHYL 106
Query: 309 VFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIP 368
+ + +SG + L Q K+L TL N +SG LPP+ N ++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 369 LSLGKISHL-EYLDLSNNKMNGTLS------EIHFVNLTK-------LTWFSASGNSLIL 414
S G S L + +S N++ G + + FV+L++ F + N+ +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 415 QVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQ 474
+ N + F L + L KNL+ LD+ N RI
Sbjct: 227 HLAKNSL-AFDLGKVGL---------------SKNLNGLDLRNNRI-------------- 256
Query: 475 LSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
G +P+ L LN+ N G+IP
Sbjct: 257 -YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 122/487 (25%), Positives = 194/487 (39%), Gaps = 75/487 (15%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSS-- 233
+ + SF ++P NLT+L HLDLS+NK S L + + L+LS
Sbjct: 134 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 234 -----NGLQ-GTISSIGLENLTSIKTIDLSLN---------------------FELGGPI 266
N +Q G I L LT D SLN F G +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 267 ----PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ 322
++ LC LT + L L ++D+ + + SLV + + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 323 LGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDL 382
G ++ L + NC G P G S + LE+LDL
Sbjct: 304 FG-WQHLELV----NCKFGQFPTLKLKSLKRLTFTSN----KGGNAFSEVDLPSLEFLDL 354
Query: 383 SNNKMN--GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGP-- 438
S N ++ G S+ F T L + S N +I ++ N++ QL+ L +L
Sbjct: 355 SRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 439 QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNE 498
+F +L S +NL LDIS+ T R +N IF S+LEVL + N
Sbjct: 413 EFSVFL-SLRNLIYLDISH-----THTRVAFNGIF----------NGLSSLEVLKMAGNS 456
Query: 499 FVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN 558
F + +L L L + + P L+SLQ+L++A+N L G +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Query: 559 FSAMATI 565
+++ I
Sbjct: 517 LTSLQKI 523
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 80 LSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139
LSLRN D+ + T R +G N L L L ++GN FQ +P
Sbjct: 418 LSLRNLIYLDISHTHT------RVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
L+NL +L+LS + + P +LS+L+ L+++
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L+ L HLD ++ + + SL+NL YL++S LS+L L ++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
+ S+ +P+ L +L LDLS + + + + L+ L+++SN
Sbjct: 455 N---------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 236 LQGTISSIGLENLTSIKTIDLSLN 259
L+ I + LTS++ I L N
Sbjct: 506 LKSVPDGI-FDRLTSLQKIWLHTN 528
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 590 ASIVMKGSMVE------YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
+++++ G+ ++ ++ + +L +++ V N S E + +L+ L+ LN++HN+
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ 137
Query: 644 G-QIPENIGNLISIESLDFSTNQ 665
++PE NL ++E LD S+N+
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 147/310 (47%), Gaps = 42/310 (13%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
LK+LT L D+ N+ Q I L +L NL L L + I P L NL+NL L+LS
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYA----------LQVHSFSWLSGQIPN--RLGNLTSLRHLDLSANKFNSTTAGWLSK 222
+ + LQ SFS S Q+ + L NLT+L LD+S+NK + + L+K
Sbjct: 138 SNTISDISALSGLTSLQQLSFS--SNQVTDLKPLANLTTLERLDISSNKVSDISV--LAK 193
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
+LE L +++N I+ +G+ LT++ +LSLN I T L LT +D++
Sbjct: 194 LTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDLA 247
Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
+ +Q+ ++ G + L L ++QIS S L +L L L++N +
Sbjct: 248 N-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED- 297
Query: 343 LPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
+ P N+ + S P+S ++ L+ L SNNK++ S NLT +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDIS-PVS--SLTKLQRLFFSNNKVSDVSS---LANLTNI 351
Query: 403 TWFSASGNSL 412
W SA N +
Sbjct: 352 NWLSAGHNQI 361
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 42/310 (13%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
LK+LT L D+ N+ Q I L +L NL L L + I P L NL+NL L+LS
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYA----------LQVHSFSWLSGQIPN--RLGNLTSLRHLDLSANKFNSTTAGWLSK 222
+ + LQ SFS S Q+ + L NLT+L LD+S+NK + + L+K
Sbjct: 138 SNTISDISALSGLTSLQQLSFS--SNQVTDLKPLANLTTLERLDISSNKVSDISV--LAK 193
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
+LE L +++N I+ +G+ LT++ +LSLN I T L LT +D++
Sbjct: 194 LTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDLA 247
Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
+ +Q+ ++ G + L L ++QIS S L +L L L++N +
Sbjct: 248 N-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED- 297
Query: 343 LPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
+ P N+ + S SL K+ L + NNK++ S NLT +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTNI 351
Query: 403 TWFSASGNSL 412
W SA N +
Sbjct: 352 NWLSAGHNQI 361
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
LK+LT L D+ N+ Q I L +L NL L L + I P L NL+NL L+LS
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
+ + S LSG Q+ + L NLT+L LD+S+NK + + L+
Sbjct: 138 SNT----ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 191
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
K +LE L +++N I+ +G+ LT++ +LSLN I T L LT +D+
Sbjct: 192 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 245
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
++ +Q+ ++ G + L L ++QIS S L +L L L++N +
Sbjct: 246 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 296
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
+ P N+ + S P+S ++ L+ L SNNK++ S NLT
Sbjct: 297 -ISPISNLKNLTYLTLYFNNISDIS-PVS--SLTKLQRLFFSNNKVSDVSS---LANLTN 349
Query: 402 LTWFSASGNSL 412
+ W SA N +
Sbjct: 350 INWLSAGHNQI 360
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 42/310 (13%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
LK+LT L D+ N+ Q I L +L NL L L + I P L NL+NL L+LS
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYA----------LQVHSFSWLSGQIPN--RLGNLTSLRHLDLSANKFNSTTAGWLSK 222
+ + LQ +FS S Q+ + L NLT+L LD+S+NK + + L+K
Sbjct: 138 SNTISDISALSGLTSLQQLNFS--SNQVTDLKPLANLTTLERLDISSNKVSDISV--LAK 193
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
+LE L +++N I+ +G+ LT++ +LSLN I T L LT +D++
Sbjct: 194 LTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDLA 247
Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
+ +Q+ ++ G + L L ++QIS S L +L L L++N +
Sbjct: 248 N-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED- 297
Query: 343 LPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
+ P N+ + S SL K+ L + NNK++ S NLT +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTNI 351
Query: 403 TWFSASGNSL 412
W SA N +
Sbjct: 352 NWLSAGHNQI 361
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 137/566 (24%), Positives = 213/566 (37%), Gaps = 122/566 (21%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSS-- 233
+ + SF ++P NLT+L HLDLS+NK S L + + L+LS
Sbjct: 134 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 234 -----NGLQ-GTISSIGLENLTSIKTIDLSLN---------------------FELGGPI 266
N +Q G I L LT D SLN F G +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 267 ----PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ 322
++ LC LT + L L ++D+ + + SLV + + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 323 LGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDL 382
G ++ L + NC G P G S + LE+LDL
Sbjct: 304 FG-WQHLELV----NCKFGQFPTLKLKSLKRLTFTSN----KGGNAFSEVDLPSLEFLDL 354
Query: 383 SNNKMN--GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGP-- 438
S N ++ G S+ F T L + S N +I ++ N++ QL+ L +L
Sbjct: 355 SRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 439 QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNE 498
+F +L S +NL LDIS+ T R +N I F S+LEVL + N
Sbjct: 413 EFSVFL-SLRNLIYLDISH-----THTRVAFNGI----------FNGLSSLEVLKMAGNS 456
Query: 499 FVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN 558
F + FLP L +L LD++ L P N+
Sbjct: 457 FQ------------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNF 618
S++ ++ SH N + Y C LN ++++D S N+
Sbjct: 493 LSSLQVLNMSH--NNFFSLDTFPYKC--------------------LNSLQVLDYSLNHI 530
Query: 619 SGEIPMELTYL-RGLQSLNLSHNIFT 643
EL + L LNL+ N F
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 80 LSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139
LSLRN D+ + T R +G N L L L ++GN FQ +P
Sbjct: 418 LSLRNLIYLDISHTHT------RVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL 199
L+NL +L+LS + + P +LS+L+ L++S + + + +F + L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPY---------KCL 517
Query: 200 TSLRHLDLSANKFNSTTAGWLSKF-NHLEFLSLSSNGLQGT 239
SL+ LD S N ++ L F + L FL+L+ N T
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 628 YLRGLQSLNLSHNIFTG-QIPENIGNLISIESLDFSTNQ 665
+L+ L+ LN++HN+ ++PE NL ++E LD S+N+
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 145/311 (46%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
LK+LT L D+ N+ Q I L +L NL L L + I P L NL+NL L+LS
Sbjct: 85 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 141
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
+ + S LSG Q+ + L NLT+L LD+S+NK + + L+
Sbjct: 142 SNT----ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 195
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
K +LE L +++N I+ +G+ LT++ +LSLN I T L LT +D+
Sbjct: 196 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 249
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
++ +Q+ ++ G + L L ++QIS S L +L L L++N +
Sbjct: 250 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 300
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
+ P N+ + S P+S ++ L+ L +NNK++ S NLT
Sbjct: 301 -ISPISNLKNLTYLTLYFNNISDIS-PVS--SLTKLQRLFFANNKVSDVSS---LANLTN 353
Query: 402 LTWFSASGNSL 412
+ W SA N +
Sbjct: 354 INWLSAGHNQI 364
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
LK+LT L D+ N+ Q I L +L NL L L + I P L NL+NL L+LS
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
+ + S LSG Q+ + L NLT+L LD+S+NK + + L+
Sbjct: 138 SNT----ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 191
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
K +LE L +++N I+ +G+ LT++ +LSLN I T L LT +D+
Sbjct: 192 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 245
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
++ +Q+ ++ G + L L ++QIS S L +L L L++N +
Sbjct: 246 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 296
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
+ P N+ + S SL K+ L + NNK++ S NLT
Sbjct: 297 -ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTN 349
Query: 402 LTWFSASGNSL 412
+ W SA N +
Sbjct: 350 INWLSAGHNQI 360
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
LK+LT L D+ N+ Q I L +L NL L L + I P L NL+NL L+LS
Sbjct: 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
+ + S LSG Q+ + L NLT+L LD+S+NK + + L+
Sbjct: 143 SNT----ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 196
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
K +LE L +++N I+ +G+ LT++ +LSLN I T L LT +D+
Sbjct: 197 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 250
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
++ +Q+ ++ G + L L ++QIS S L +L L L++N +
Sbjct: 251 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
+ P N+ + S SL K+ L + NNK++ S NLT
Sbjct: 302 -ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTN 354
Query: 402 LTWFSASGNSL 412
+ W SA N +
Sbjct: 355 INWLSAGHNQI 365
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 116/464 (25%), Positives = 186/464 (40%), Gaps = 77/464 (16%)
Query: 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
L+ LR L LS N+ S LE+L +S N LQ I + S++ +DLS
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN----ISCCPMASLRHLDLSF 130
Query: 259 NFELGGPIPTSFVRLCELTSIDVSDVKLSQ-DLSQVLDILSACGASALESLVFSSSQISG 317
N P+ F L +LT + +S K Q DL V + +C L LV S I G
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC---ILLDLV--SYHIKG 185
Query: 318 HLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHL 377
T L Q + L L + P ++ + + +S+ + HL
Sbjct: 186 GETESL-QIPNTTVLHL----VFHP-----------------NSLFSVQVNMSVNALGHL 223
Query: 378 EYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG 437
+ LSN K+N + L++LT N + + W +L
Sbjct: 224 Q---LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF------- 273
Query: 438 PQFPSWLHSQKNLSVLDISNARISDTIPRW-FWNSIFQLSGIIPESFKN----FS----- 487
W + + L+I N I++ I R F S L ++ E KN FS
Sbjct: 274 -----W---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 488 ------NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL 541
N+++L++ D F+ + FT L N F + L LQ L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFT---FLNFTQNVFTDSVFQGCSTLKRLQTL 382
Query: 542 DVANNSLSGTMPGCV--NNFSAMATIDSSHQS-NAMSYFEVTAY--DCEVLEDASIVMKG 596
+ N L + N S++ T+D S S N+ +Y A+ VL +S ++ G
Sbjct: 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Query: 597 SMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640
S+ + + V+++D+ NN IP ++T+L+ LQ LN++ N
Sbjct: 443 SV--FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASN 483
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 31/205 (15%)
Query: 96 EYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFA 155
EY D + L N S + L HLDLS NDF + + K G+L L +L LS A+F
Sbjct: 103 EYLDVSHNRLQ---NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Query: 156 GIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL-----------------GN 198
+ + +L +L C+ L Y ++ L QIPN +
Sbjct: 160 QLDLLPVAHL-HLSCILLDLVSYHIKGGETESL--QIPNTTVLHLVFHPNSLFSVQVNMS 216
Query: 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
+ +L HL LS K N L + FLS + G T+ ++ L+++ + + L
Sbjct: 217 VNALGHLQLSNIKLNDENCQRL-----MTFLSELTRG--PTLLNVTLQHIETTWKCSVKL 269
Query: 259 NFELGGPIPTSFVRLCELTSIDVSD 283
F+ P P ++ + LT + D
Sbjct: 270 -FQFFWPRPVEYLNIYNLTITERID 293
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 80 LSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139
LSLRN D+ + T R +G N L L L ++GN FQ +P
Sbjct: 123 LSLRNLIYLDISHTHT------RVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL 199
L+NL +L+LS + + P +LS+L+ L++S + + + +F + L
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPY---------KCL 222
Query: 200 TSLRHLDLSANKFNSTTAGWLSKF-NHLEFLSLSSNGLQGT 239
SL+ LD S N ++ L F + L FL+L+ N T
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGL--QGTISSIGLENLTSIKTIDLS 257
+S L+L +NK S G K L LSLSSNGL +G S TS+K +DLS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLS 86
Query: 258 LNFELGGPIPTS--FVRLCELTSIDVSDVKLSQ 288
N G I S F+ L +L +D L Q
Sbjct: 87 FN----GVITMSSNFLGLEQLEHLDFQHSNLKQ 115
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 107/275 (38%), Gaps = 69/275 (25%)
Query: 373 KISHLEYLDLSNNKMN--GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL 430
K++ L L LS+N ++ G S+ F T L + S N +I ++ N++ QL+ L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107
Query: 431 LMSCHLGP--QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSN 488
+L +F +L S +NL LDIS+ T R +N IF S+
Sbjct: 108 FQHSNLKQMSEFSVFL-SLRNLIYLDISH-----THTRVAFNGIF----------NGLSS 151
Query: 489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSL 548
LEVL + N F + FLP L +L LD++ L
Sbjct: 152 LEVLKMAGNSFQ------------------------ENFLPDIFTELRNLTFLDLSQCQL 187
Query: 549 SGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV 608
P N+ S++ ++ SH N + Y C LN +
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSH--NNFFSLDTFPYKC--------------------LNSL 225
Query: 609 RIIDVSKNNFSGEIPMELTYL-RGLQSLNLSHNIF 642
+++D S N+ EL + L LNL+ N F
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAE----FAGIIPHQLGNLSNLRCL 171
L+ L HLD ++ + + SL+NL YL++S F GI LS+L L
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVL 155
Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
++ + S+ +P+ L +L LDLS + + + + L+ L++
Sbjct: 156 KMAGN---------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLN 259
S N ++ + + L S++ +D SLN
Sbjct: 207 SHNNF-FSLDTFPYKCLNSLQVLDYSLN 233
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 363 LNGSIPLS---LGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPN 419
NG I +S LG + LE+LD ++ + F++L L + S + N
Sbjct: 87 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 420 WVPPFQLKTLLLMSCHLGPQF-PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI 478
+ L+ L + F P +NL+ LD+S QL +
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC---------------QLEQL 190
Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLIL 517
P +F + S+L+VLN+ N F + T+ + SL +L
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVL 228
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 80 LSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139
LSLRN D+ + T R +G N L L L ++GN FQ +P
Sbjct: 442 LSLRNLIYLDISHTHT------RVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFT 491
Query: 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL 199
L+NL +L+LS + + P +LS+L+ L++S + + + +F + L
Sbjct: 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPY---------KCL 541
Query: 200 TSLRHLDLSANKFNSTTAGWLSKF-NHLEFLSLSSNGLQGT 239
SL+ LD S N ++ L F + L FL+L+ N T
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214
+ + SF ++P NLT+L HLDLS+NK S
Sbjct: 158 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 107/272 (39%), Gaps = 69/272 (25%)
Query: 377 LEYLDLSNNKMN--GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC 434
LE+LDLS N ++ G S+ F ++ L + S N +I ++ N++ QL+ L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 430
Query: 435 HLGP--QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL 492
+L +F +L S +NL LDIS+ T R +N IF S+LEVL
Sbjct: 431 NLKQMSEFSVFL-SLRNLIYLDISH-----THTRVAFNGIF----------NGLSSLEVL 474
Query: 493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTM 552
+ N F + FLP L +L LD++ L
Sbjct: 475 KMAGNSFQ------------------------ENFLPDIFTELRNLTFLDLSQCQLEQLS 510
Query: 553 PGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIID 612
P N+ S++ ++ SH N + Y C LN ++++D
Sbjct: 511 PTAFNSLSSLQVLNMSH--NNFFSLDTFPYKC--------------------LNSLQVLD 548
Query: 613 VSKNNFSGEIPMELTYL-RGLQSLNLSHNIFT 643
S N+ EL + L LNL+ N F
Sbjct: 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L+ L HLD ++ + + SL+NL YL++S LS+L L ++
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
+ S+ +P+ L +L LDLS + + + + L+ L++S N
Sbjct: 479 N---------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 236 LQGTISSIGLENLTSIKTIDLSLN 259
++ + + L S++ +D SLN
Sbjct: 530 F-FSLDTFPYKCLNSLQVLDYSLN 552
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 590 ASIVMKGSMVE------YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
+++++ G+ ++ ++ + +L +++ V N S E + +L+ L+ LN++HN+
Sbjct: 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ 161
Query: 644 G-QIPENIGNLISIESLDFSTNQ 665
++PE NL ++E LD S+N+
Sbjct: 162 SFKLPEYFSNLTNLEHLDLSSNK 184
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 202 LRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF 260
++ LDLS N + +A L+ F LE L+LSSN L T+ LE+L++++T+DL+ N+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 201 SLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF 260
+++ LDLS N + +A L+ F LE L+LSSN L T+ LE+L++++T+DL+ N+
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214
+ + SF ++P NLT+L HLDLS+NK S
Sbjct: 135 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 590 ASIVMKGSMVE------YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
+++++ G+ ++ ++ + +L +++ V N S E + +L+ L+ LN++HN+
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ 138
Query: 644 G-QIPENIGNLISIESLDFSTNQ 665
++PE NL ++E LD S+N+
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNK 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214
+ + SF ++P NLT+L HLDLS+NK S
Sbjct: 134 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 590 ASIVMKGSMVE------YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
+++++ G+ ++ ++ + +L +++ V N S E + +L+ L+ LN++HN+
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ 137
Query: 644 G-QIPENIGNLISIESLDFSTNQ 665
++PE NL ++E LD S+N+
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK 160
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 56/199 (28%)
Query: 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS 250
+IP+ L S ++LDLS N + F L+ L LS +Q TI ++L+
Sbjct: 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77
Query: 251 IKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVF 310
+ T+ L+ G PI Q L + + G S+L+ LV
Sbjct: 78 LSTLILT-----GNPI-------------------------QSLALGAFSGLSSLQKLVA 107
Query: 311 SSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLS 370
+ ++ +G K+L+ L++ N I +P
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQS-----------------------FKLPEY 144
Query: 371 LGKISHLEYLDLSNNKMNG 389
+++LE+LDLS+NK+
Sbjct: 145 FSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214
+ + SF ++P NLT+L HLDLS+NK S
Sbjct: 136 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 590 ASIVMKGSMVE------YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
+++++ G+ ++ ++ + +L +++ V N S E + +L+ L+ LN++HN+
Sbjct: 81 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ 139
Query: 644 G-QIPENIGNLISIESLDFSTNQ 665
++PE NL ++E LD S+N+
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNK 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214
+ + SF ++P NLT+L HLDLS+NK S
Sbjct: 135 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 590 ASIVMKGSMVE------YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
+++++ G+ ++ ++ + +L +++ V N S E + +L+ L+ LN++HN+
Sbjct: 80 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ 138
Query: 644 G-QIPENIGNLISIESLDFSTNQ 665
++PE NL ++E LD S+N+
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNK 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL+ L L+GN Q + + + G L +L+ L A + +G+L L+ L+++
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214
+ + SF ++P NLT+L HLDLS+NK S
Sbjct: 136 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 628 YLRGLQSLNLSHNIFTG-QIPENIGNLISIESLDFSTNQ 665
+L+ L+ LN++HN+ ++PE NL ++E LD S+N+
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
L +L +T L+LSGN + + + L++++ L+L+ + + P L LSNL+ L
Sbjct: 87 LKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 141
Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA-GWLSKFNHLE 227
L + Q+ + S L+G LT+L++L + N+ N T LSK L
Sbjct: 142 LDLN----QITNISPLAG--------LTNLQYLSIGNNQVNDLTPLANLSKLTTLR 185
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 33/160 (20%)
Query: 110 NPSLVDLKHLTHLDLSGNDFQGI------RIPKY----LGSLKNLRYLNLSGAEFAGIIP 159
N + V L L L L N + I RIP LG LK L Y+ S F G
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI--SEGAFEG--- 183
Query: 160 HQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW 219
LSNLR L+L+ +IPN L L L LDLS N ++ G
Sbjct: 184 -----LSNLRYLNLAMCNLR-----------EIPN-LTPLIKLDELDLSGNHLSAIRPGS 226
Query: 220 LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
HL+ L + + +Q I +NL S+ I+L+ N
Sbjct: 227 FQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPK-YLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
+L +L +LT+L L+GN Q + P L NL+ L L + + L+NL
Sbjct: 80 ALKELTNLTYLILTGNQLQSL--PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
L L Y Q+ S L + ++L NLT LDL N+ S G K L+ LS
Sbjct: 138 LYL----YHNQLQS---LPKGVFDKLTNLT---RLDLDNNQLQSLPEGVFDKLTQLKQLS 187
Query: 231 LSSNGLQGTISSIGLENLTSIKTI 254
L+ N L+ + + LTS+ I
Sbjct: 188 LNDNQLKSVPDGV-FDRLTSLTHI 210
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 137 YLGSLKNLRYLNLSGAEFAGIIPHQLG--NLSNLRCLDLSWSEYALQVHSFSWLS----- 189
+LG+ +++ ++S A F G+ + NL ++S + + H FS L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF----HCFSGLQELDLT 286
Query: 190 ----GQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGL 245
++P+ L L++L+ L LSANKF + S F L LS+ N + + + L
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 246 ENLTSIKTIDLS 257
ENL +++ +DLS
Sbjct: 347 ENLENLRELDLS 358
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525
+F+N I +F FS L+ L+L + ++P+ + G ++L L+L +NKF+
Sbjct: 264 HYFFN-------ISSNTFHCFSGLQELDLTATH-LSELPSGLV-GLSTLKKLVLSANKFE 314
Query: 526 GFLPIQLCRLTSLQILDVANNSLSGTM-PGCVNNFSAMATIDSSH 569
I SL L + N+ + GC+ N + +D SH
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
+L SL HLDLS N +S ++ W + L++L+L N Q + NLT+++T+ +
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 258 LNFELGGPI-PTSFVRLCELTSIDVSDVKL----SQDLSQVLDI 296
N E I F L L +++ + L SQ L + DI
Sbjct: 158 -NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 200
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 69 VCSNLTGHVLQLSLRNPFRNDLRYA--TTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSG 126
C+NL +L+ S N D Y+ + E+ D + LS + L L +L+L G
Sbjct: 74 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 133
Query: 127 NDFQGIRIPKYLGSLKNLRYLNLSGAE-FAGIIPHQLGNLSNLRCLDL 173
N +Q + + +L NL+ L + E F+ I L++L L++
Sbjct: 134 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 181
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 98 EDYMRSML-SGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAG 156
++++RSM +G + L+ LK+LT LD+S N F +P + +R+LNLS G
Sbjct: 396 QNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSS---TG 447
Query: 157 IIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTT 216
I + L LD+S + + SFS L L+ L +S NK +
Sbjct: 448 IRVVKTCIPQTLEVLDVSNN----NLDSFSLF----------LPRLQELYISRNKLKTLP 493
Query: 217 AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
S F L + ++SN L+ I + LTS++ I L N
Sbjct: 494 DA--SLFPVLLVMKIASNQLKSVPDGI-FDRLTSLQKIWLHTN 533
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 113 LVDLKHLTHLDLSGNDFQGIRIPK-YLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
L L++L LDLS +D + L +L++L+YLNLS E G+ L L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 172 DLSWSE-------------YALQVHSFSWLSGQIPNR--LGNLTSLRHLDLSANKFNSTT 216
D++++ + L+V + S N+ L L LRHL+L N F
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD-- 462
Query: 217 AGWLSKFN------HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
G +SK N LE L LSS L +I L ++ +DLS N
Sbjct: 463 -GSISKTNLLQMVGSLEILILSSCNLL-SIDQQAFHGLRNVNHLDLSHN 509
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 113 LVDLKHLTHLDLSGNDFQGIRIPK--YLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
L L+ L HL+L GN FQ I K L + +L L LS I L N+
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNH 503
Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
LDLS + L+G + L +L L +L++++N L + ++
Sbjct: 504 LDLSHNS----------LTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIIN 552
Query: 231 LSSNGLQGTISSI 243
LS N L T S+I
Sbjct: 553 LSHNPLDCTCSNI 565
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 26/181 (14%)
Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
+ S + +F+ F+ ++ L+L G +P+ + EG SL L+L +N FD I
Sbjct: 264 RFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGI-EGMNSLKKLVLNANSFDQLCQINAA 321
Query: 534 RLTSLQILDVANNSLS---GTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA 590
SL+ L + N GT C+ + +D SH ++ A DC L+
Sbjct: 322 SFPSLRDLYIKGNMRKLDLGTR--CLEKLENLQKLDLSHS-------DIEASDCCNLQLK 372
Query: 591 SIV-MKGSMVEYNSILNL----------VRIIDVSKNNFSGEIPME-LTYLRGLQSLNLS 638
++ ++ + YN L L + ++DV+ + + P L L+ LNLS
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
Query: 639 H 639
H
Sbjct: 433 H 433
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
+L SL HLDLS N +S ++ W + L++L+L N Q + NLT+++T+ +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 258 LNFELGGPI-PTSFVRLCELTSIDVSDVKL----SQDLSQVLDI 296
N E I F L L +++ + L SQ L + DI
Sbjct: 132 -NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 69 VCSNLTGHVLQLSLRNPFRNDLRYA--TTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSG 126
C+NL +L+ S N D Y+ + E+ D + LS + L L +L+L G
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107
Query: 127 NDFQGIRIPKYLGSLKNLRYLNLSGAE-FAGIIPHQLGNLSNLRCLDL 173
N +Q + + +L NL+ L + E F+ I L++L L++
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
QL+GI P +F+ S+++ L LG+N+ + +I M G L L L N+ +P
Sbjct: 65 QLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 534 RLTSLQILDVANN 546
L SL L++A+N
Sbjct: 124 HLNSLTSLNLASN 136
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 99 DYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGII 158
+ R+ L+G + H+ L L N + I +LG L L+ LNL + + ++
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG-LHQLKTLNLYDNQISCVM 118
Query: 159 PHQLGNLSNLRCLDLSWSEYALQVHSFSWLS 189
P +L++L L+L+ + + H +W +
Sbjct: 119 PGSFEHLNSLTSLNLASNPFNCNCH-LAWFA 148
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 93 ATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGA 152
A TE D + L+ + + L LT L+L N Q + + L L L L+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANN 93
Query: 153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF 212
+ A + LG +L LD + L + L + +RL T L+ L L+ N+
Sbjct: 94 QLASL---PLGVFDHLTQLD----KLYLGGNQLKSLPSGVFDRL---TKLKELRLNTNQL 143
Query: 213 NSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDL 256
S AG K +L+ LSLS+N LQ ++ + L ++TI L
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITL 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 93 ATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGA 152
A TE D + L+ + + L LT L+L N Q + + L L L L+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANN 93
Query: 153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF 212
+ A + LG +L LD + L + L + +RL T L+ L L+ N+
Sbjct: 94 QLASL---PLGVFDHLTQLD----KLYLGGNQLKSLPSGVFDRL---TKLKELRLNTNQL 143
Query: 213 NSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDL 256
S AG K +L+ LSLS+N LQ ++ + L ++TI L
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITL 186
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL++L L+GN Q P L +L L + A + +G L L+ L+++
Sbjct: 74 LHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA- 131
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFL 229
H+F S ++P NLT+L H+DLS N + T N L+FL
Sbjct: 132 -------HNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITV------NDLQFL 171
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS----GAEFAGIIPHQLGN 164
++ + + L+ L HLD + + + SL+ L YL++S +F GI LG
Sbjct: 386 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF---LG- 441
Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN 224
L++L L ++ + S+ + N N T+L LDLS + + G +
Sbjct: 442 LTSLNTLKMAGN---------SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 492
Query: 225 HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
L+ L++S N L SS L S+ T+D S N
Sbjct: 493 RLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFN 526
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 111 PSLVDLKHLTHLDLSGND----FQGIRIPKYLGSLKNLRYLNLS--GAEFAGIIPHQLGN 164
P+L DL L L L+ N F+ + +P +L YL+LS F+G +
Sbjct: 318 PTL-DLPFLKSLTLTMNKGSISFKKVALP-------SLSYLDLSRNALSFSGCCSYSDLG 369
Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTT--AGWLSK 222
++LR LDLS++ + +F +G L L+HLD + T + +LS
Sbjct: 370 TNSLRHLDLSFNGAIIMSANF----------MG-LEELQHLDFQHSTLKRVTEFSAFLS- 417
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
L +L +S + I L LTS+ T+ ++ N + F LT +D+S
Sbjct: 418 LEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 476
Query: 283 DVKLSQDLSQVLDIL 297
+L Q V D L
Sbjct: 477 KCQLEQISWGVFDTL 491
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
L HL++L L+GN Q P L +L L + A + +G L L+ L+++
Sbjct: 79 LHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA- 136
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFL 229
H+F S ++P NLT+L H+DLS N + T N L+FL
Sbjct: 137 -------HNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITV------NDLQFL 176
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS----GAEFAGIIPHQLGNLSNLRCL 171
L+ L HLD + + + SL+ L YL++S +F GI LG L++L L
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF---LG-LTSLNTL 453
Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
++ + S+ + N N T+L LDLS + + G + L+ L++
Sbjct: 454 KMAGN---------SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504
Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLN 259
S N L SS L S+ T+D S N
Sbjct: 505 SHNNLLFLDSS-HYNQLYSLSTLDCSFN 531
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 111 PSLVDLKHLTHLDLSGND----FQGIRIPKYLGSLKNLRYLNLS--GAEFAGIIPHQLGN 164
P+L DL L L L+ N F+ + +P +L YL+LS F+G +
Sbjct: 323 PTL-DLPFLKSLTLTMNKGSISFKKVALP-------SLSYLDLSRNALSFSGCCSYSDLG 374
Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTT--AGWLSK 222
++LR LDLS++ + +F +G L L+HLD + T + +LS
Sbjct: 375 TNSLRHLDLSFNGAIIMSANF----------MG-LEELQHLDFQHSTLKRVTEFSAFLS- 422
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
L +L +S + I L LTS+ T+ ++ N + F LT +D+S
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481
Query: 283 DVKLSQDLSQVLDIL 297
+L Q V D L
Sbjct: 482 KCQLEQISWGVFDTL 496
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 25/189 (13%)
Query: 453 LDISNARISDTIPRWFWN---SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE 509
+D +++ D IP N S L + SF NFS L+ L+L E + I
Sbjct: 19 MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWH 77
Query: 510 GFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH 569
G L LIL N F P LTSL+ L L+ + + ++ +H
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYL 629
N + ++ AY ++++ NLV +D+S N +L +L
Sbjct: 138 --NFIHSCKLPAY------------------FSNLTNLVH-VDLSYNYIQTITVNDLQFL 176
Query: 630 RGLQSLNLS 638
R +NLS
Sbjct: 177 RENPQVNLS 185
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 11/151 (7%)
Query: 93 ATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGA 152
A T Y D + L N +L LT L L GN Q + L +L YLNLS
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTN 86
Query: 153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF 212
+ + L+ L+ E AL + L + ++ LT L+ L L N+
Sbjct: 87 QLQSLPNGVFDKLTQLK-------ELALNTNQLQSLPDGVFDK---LTQLKDLRLYQNQL 136
Query: 213 NSTTAGWLSKFNHLEFLSLSSNGLQGTISSI 243
S G + L+++ L N T I
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 167
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
LTSL L L NK S G +K L +L+LS+N LQ + + + LT +K + L+
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELALNT 109
Query: 259 N 259
N
Sbjct: 110 N 110
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 18/116 (15%)
Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
L +L +T L+LSGN + + + L++++ L+L+ + + P L LSNL+ L
Sbjct: 81 LKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135
Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDL-SANKFNSTTAGWLSKFNHLE 227
L + Q+ + S L+G LT+L++L + +A + T LSK L+
Sbjct: 136 LDLN----QITNISPLAG--------LTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
L +L L+L N+ T L + L LS N L+ + GL+ SIKT+DL+
Sbjct: 62 LNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQ---SIKTLDLT- 115
Query: 259 NFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH 318
+ ++ T L L+++ V L DL+Q+ +I G + L+ L ++Q+S
Sbjct: 116 STQI-----TDVTPLAGLSNLQV----LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166
Query: 319 LTSQLGQFKSLRTLSLDDNCIS 340
+ L L TL DDN IS
Sbjct: 167 --TPLANLSKLTTLKADDNKIS 186
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 27/156 (17%)
Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNL-------SGAEFAGIIPHQLGNL------ 165
+T LDLSGN F+ ++ ++ + +L G+ F N
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 166 -SNLRCLDLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF 223
S ++ DLS S+ +AL FS + T L L L+ N+ N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFS-----------HFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 224 NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
HL L+LS N L G+I S ENL ++ +DLS N
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQL 162
++LSGN L L+ L L N+ + I+ + +++ L+L+ + I L
Sbjct: 118 AVLSGNFFKPLTSLEMLV---LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Query: 163 GNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA 217
N L S LQ + WL + TS+ LDLS N F + A
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 367 IPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQ- 425
+P L HL +DLSNN+++ TLS F N+T+L S N L +PP
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL------RCIPPRTF 98
Query: 426 --LKTLLLMSCH 435
LK+L L+S H
Sbjct: 99 DGLKSLRLLSLH 110
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 437 GPQF---PSWLHSQKNLSVLDISNARISDTIPRWFWN---------SIFQLSGIIPESFK 484
G QF P L + K+L+++D+SN RIS + F N S +L I P +F
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 485 NFSNLEVLNLGDNEF 499
+L +L+L N+
Sbjct: 100 GLKSLRLLSLHGNDI 114
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
QL + P F + + L L+LG NE +P + + TSL L L +N+
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATI 565
+LT L+ L + NN L G ++ + +
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 33/146 (22%)
Query: 112 SLVDLKHLTHLDLSGNDFQGI----------------------RIPK-YLGSLKNLRYLN 148
+L +L +LT+L L+GN Q + +P L NL YLN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 149 LSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLS 208
L+ + + L+NL LDLS+++ L LT L+ L L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQ----------LQSLPEGVFDKLTQLKDLRLY 189
Query: 209 ANKFNSTTAGWLSKFNHLEFLSLSSN 234
N+ S G + L+++ L N
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 374 ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWV--PPFQLKTLLL 431
+ ++ YL L NK++ + LT LT+ +GN L Q PN V LK L+L
Sbjct: 62 LPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVL 116
Query: 432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEV 491
+ L NL+ L++++ ++ ++P+ G+ F +NL
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPK----------GV----FDKLTNLTE 161
Query: 492 LNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGT 551
L+L N+ +P + + T L L L N+ RLTSLQ + + +N T
Sbjct: 162 LDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220
Query: 552 MPG 554
PG
Sbjct: 221 CPG 223
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL 541
+ K +NL L L N+ +P + + T+L L+L N+ +LT+L L
Sbjct: 80 ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 542 DVANNSLSGTMPGCVNNFSAMATIDSSH 569
++A+N L G + + + +D S+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSY 166
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 169 RCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF 228
RC + S + A+ H +++ +P G T R LDL N+ + + F HLE
Sbjct: 6 RC-ECSAQDRAVLCHRKRFVA--VPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60
Query: 229 LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKL 286
L L+ N + + NL +++T+ L N P+ F L LT +D+S+ K+
Sbjct: 61 LELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV-FTGLSNLTKLDISENKI 116
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 136 KYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR 195
++L L L+ + I + L ++ NL L+L + + H F
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFD--------- 167
Query: 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID 255
+L +L ++ +NK G K L+ L+L+SN L+ I + LTS++ I
Sbjct: 168 --DLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI-FDRLTSLQKIW 224
Query: 256 LSLN 259
L N
Sbjct: 225 LHTN 228
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS-- 176
LT LDLS N+ + + L +LRYL+L + P LSNLR L L +
Sbjct: 250 LTQLDLSYNNLHDVGNGSF-SYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFT 308
Query: 177 --EYALQVH------SFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF 228
+L H SF WL L +L++ N ST + + L++
Sbjct: 309 KQSVSLASHPNIDDFSFQWLK-----------YLEYLNMDDNNIPSTKSNTFTGLVSLKY 357
Query: 229 LSLS 232
LSLS
Sbjct: 358 LSLS 361
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 27/234 (11%)
Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIP-HQLGNLSNL----- 168
+L+ +T L ++G I+ +YL NL YLNL+G + I P L L+NL
Sbjct: 42 ELESITKLVVAGEKVASIQGIEYL---TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN 98
Query: 169 RCLDLSWSEYALQVHSFSWLSGQIPN--RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHL 226
+ D+S + + I + L NLT L+L AN N + LS L
Sbjct: 99 KITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGAN-HNLSDLSPLSNXTGL 157
Query: 227 EFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKL 286
+L+++ + ++ L +L S LSLN+ I L LTS+
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYS-----LSLNYNQIEDIS----PLASLTSLHY----F 204
Query: 287 SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCIS 340
+ ++Q+ DI + L SL +++I+ S L L L + N IS
Sbjct: 205 TAYVNQITDITPVANXTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQIS 256
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 86 FRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLR 145
F +L Y + ++ VN L HLDLS N F + I K G++ L+
Sbjct: 67 FNQELEYLDLSHNKLVKISCHPTVN--------LKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 146 YLNLSGA--EFAGIIPHQLGNLSNL 168
+L LS E + ++P N+S +
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKV 143
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
P+L L L L+LSGN IR P L +LR L L A+ A I + +L +L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 171 LDLS 174
L+LS
Sbjct: 231 LNLS 234
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
LK L HL++ ND GI+ + G L NL+YL+LS + ++LR L+
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNS------------FTSLRT--LTN 377
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
+ HS L L+L+ NK + + S HLE L L N
Sbjct: 378 ETFVSLAHS----------------PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 421
Query: 236 LQGTISS---IGLENLTSI-----KTIDLSLN-FELGGPIPTSFVRLCELTSIDVS 282
+ ++ GLEN+ I K + L+ N F L + +R L ++D S
Sbjct: 422 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 477
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
LK L HL++ ND GI+ + G L NL+YL+LS + ++LR L+
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNS------------FTSLRT--LTN 382
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
+ HS L L+L+ NK + + S HLE L L N
Sbjct: 383 ETFVSLAHS----------------PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 426
Query: 236 LQGTISS---IGLENLTSI-----KTIDLSLN-FELGGPIPTSFVRLCELTSIDVS 282
+ ++ GLEN+ I K + L+ N F L + +R L ++D S
Sbjct: 427 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 482
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 207 LSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI 266
L N+ + A +L L L SN L G I + LT ++ +DLS N +L
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 267 PTSFVRLCELTSIDVSDVKLSQ 288
PT+F L L ++ + L +
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQE 118
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
LK L HL++ ND GI+ + G L NL+YL+LS + ++LR L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNS------------FTSLRT--LTN 372
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
+ HS L L+L+ NK + + S HLE L L N
Sbjct: 373 ETFVSLAHS----------------PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 236 LQGTISS---IGLENLTSI-----KTIDLSLN-FELGGPIPTSFVRLCELTSIDVS 282
+ ++ GLEN+ I K + L+ N F L + +R L ++D S
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
P+L L L L+LSGN IR P L +LR L L A+ A I + +L +L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 171 LDLS 174
L+LS
Sbjct: 231 LNLS 234
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK 252
P LT L LDL N+ AG K L LSL+ N L+ +I +NL S+
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLT 105
Query: 253 TI 254
I
Sbjct: 106 HI 107
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 39/257 (15%)
Query: 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQL 162
++LSGN L L+ L L N+ + I+ + +++ L+L+ + I L
Sbjct: 118 AVLSGNFFKPLTSLEMLV---LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Query: 163 GNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSK 222
N L S LQ + WL + TS+ LDLS N F + A +
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---KR 231
Query: 223 FNHLEFLSLSSNGLQGTI--------SSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC 274
F F +++ +Q I SS G T+ K D NF G + S V+ C
Sbjct: 232 F----FDAIAGTKIQSLILSNSYNMGSSFG---HTNFKDPD---NFTFKG-LEASGVKTC 280
Query: 275 ELTS--------------IDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLT 320
+L+ D+ + L+Q+ +D + G + L+ L ++Q+
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPD 340
Query: 321 SQLGQFKSLRTLSLDDN 337
+ SL+ + L N
Sbjct: 341 GIFDRLTSLQKIWLHTN 357
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK 252
P LT L LDL N+ AG K L LSL+ N L+ +I +NL S+
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLT 113
Query: 253 TI 254
I
Sbjct: 114 HI 115
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
Q++ + P F + NL+ L LG N+ G +P + + T L +L L +N+
Sbjct: 51 QITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 534 RLTSLQILDVANNSLS 549
RL L+ L + N L+
Sbjct: 110 RLVHLKELFMCCNKLT 125
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 395 HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLD 454
H ++L+ L F+ S N + + T L ++ + + P+ + + NL VLD
Sbjct: 227 HALDLSNLQIFNISAN----------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLD 276
Query: 455 ISNARISDTIPRWFWNSIFQLS---------GIIPESFKNFSNLEVLNLGDNEFVGKIPT 505
+S+ R++ ++P S FQL +P F N NL+ L + N +
Sbjct: 277 LSHNRLT-SLPAEL-GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Query: 506 WMGEGFTSLLILILRSNKFDGFLP 529
+ E + LI LR N+ + LP
Sbjct: 335 ILTEKSVTGLIFYLRDNRPEIPLP 358
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 164 NLSNLRCLDLSWSEYALQVHSFSWLSG----QIPNRLGNLTSLRHLDLSANKFNSTTA 217
+LSNL+ ++S + + + +L+G ++P + NL++LR LDLS N+ S A
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 452 VLDISNARI---SDTIPRWFWNSIFQLSG----IIPESFKNFSNLEVLNLGDNEFVGKIP 504
LD+SN +I S I ++ + + L+G +P KN SNL VL+L N +P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LP 286
Query: 505 TWMGEGFTSLLILILRSNKFDGF---LPIQLCRLTSLQILDVANNSLS 549
+G F FD LP + L +LQ L V N L
Sbjct: 287 AELGSCFQLKYFYF-----FDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK 252
P LT L LDL N+ AG K L LSL+ N L+ +I +NL S+
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLT 105
Query: 253 TI 254
I
Sbjct: 106 HI 107
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEF---AGIIPHQL 162
+L+ LK+LT++D+S N F +P+ + ++YLNLS G IP L
Sbjct: 382 TLLTLKNLTNIDISKNSFHS--MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTL 433
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDL 256
G +++ LDLS N+ + L + +L+ L L+SNG+ TI +L S++ +DL
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDL 81
Query: 257 SLNF 260
S N+
Sbjct: 82 SYNY 85
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDL 256
G +++ LDLS N+ + L + +L+ L L+SNG+ TI +L S++ +DL
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDL 107
Query: 257 SLNF 260
S N+
Sbjct: 108 SYNY 111
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQL 162
+LK LT LDLS N + + + G L +L+ ++ S + + H+L
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,100,598
Number of Sequences: 62578
Number of extensions: 883528
Number of successful extensions: 2303
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 363
length of query: 794
length of database: 14,973,337
effective HSP length: 107
effective length of query: 687
effective length of database: 8,277,491
effective search space: 5686636317
effective search space used: 5686636317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)