Query 046398
Match_columns 794
No_of_seqs 1020 out of 5592
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.1E-74 1.5E-78 698.2 47.7 583 32-717 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.5E-59 1.6E-63 566.3 38.4 515 117-715 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 8E-41 1.7E-45 329.8 -14.0 486 100-691 52-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 1.7E-36 3.7E-41 312.2 8.2 369 202-663 80-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 1.4E-36 3.1E-41 312.8 6.1 367 146-545 82-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 8.8E-40 1.9E-44 322.5 -17.3 465 96-667 71-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.5E-35 3.3E-40 321.4 -4.4 465 115-688 43-510 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 3.4E-34 7.3E-39 296.8 -3.6 398 116-696 6-409 (1255)
9 KOG0618 Serine/threonine phosp 100.0 2E-34 4.4E-39 312.8 -5.8 474 108-689 12-487 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 2.3E-32 4.9E-37 283.3 -2.0 356 265-696 23-380 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.8E-22 3.8E-27 246.7 26.4 339 269-688 553-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.3E-21 4.9E-26 237.0 26.6 331 302-711 557-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.3E-25 1.1E-29 218.2 -4.4 375 304-688 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 2.7E-24 5.8E-29 213.2 -1.0 277 118-412 68-358 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 2.3E-21 5E-26 219.3 18.0 270 296-696 194-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.4E-21 5.1E-26 219.2 17.6 260 327-717 201-461 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.3E-19 5.1E-24 204.7 13.0 101 300-413 175-275 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.8E-19 1.5E-23 200.9 13.6 247 327-691 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.9E-23 185.1 1.7 67 483-549 161-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 9.5E-19 2.1E-23 186.2 -0.1 282 331-690 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 3.1E-18 6.7E-23 151.0 -3.7 185 444-696 29-217 (264)
22 KOG0617 Ras suppressor protein 99.6 5.9E-18 1.3E-22 149.2 -4.7 166 483-700 29-195 (264)
23 PLN03150 hypothetical protein; 99.6 9.3E-15 2E-19 166.9 11.3 116 607-722 419-538 (623)
24 PLN03150 hypothetical protein; 99.6 1.7E-14 3.7E-19 164.7 12.4 150 30-211 368-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.2E-18 143.6 -4.2 169 428-667 79-247 (722)
26 COG4886 Leucine-rich repeat (L 99.2 2.8E-11 6.1E-16 132.6 7.3 182 446-697 114-296 (394)
27 KOG0532 Leucine-rich repeat (L 99.2 1.2E-12 2.7E-17 136.9 -4.1 156 439-664 112-270 (722)
28 COG4886 Leucine-rich repeat (L 99.1 8.2E-11 1.8E-15 128.9 8.4 158 449-675 141-298 (394)
29 KOG3207 Beta-tubulin folding c 99.0 2.9E-11 6.4E-16 123.0 -0.8 210 425-693 122-341 (505)
30 KOG1909 Ran GTPase-activating 99.0 7.8E-11 1.7E-15 116.8 0.3 260 111-412 24-310 (382)
31 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.3E-15 111.9 1.3 131 512-694 284-415 (490)
32 KOG1909 Ran GTPase-activating 98.9 1.1E-10 2.3E-15 115.9 -2.1 146 373-549 155-311 (382)
33 KOG1259 Nischarin, modulator o 98.9 3E-10 6.6E-15 109.8 0.9 127 304-437 285-412 (490)
34 KOG4658 Apoptotic ATPase [Sign 98.9 8.2E-10 1.8E-14 129.0 3.8 270 117-408 545-827 (889)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 102.1 4.1 109 113-237 15-126 (175)
36 PF14580 LRR_9: Leucine-rich r 98.9 3E-09 6.5E-14 99.5 5.8 78 608-686 66-148 (175)
37 KOG3207 Beta-tubulin folding c 98.8 6.5E-10 1.4E-14 113.4 1.1 211 163-413 118-339 (505)
38 PF08263 LRRNT_2: Leucine rich 98.8 5.1E-09 1.1E-13 73.3 4.2 39 33-71 2-43 (43)
39 KOG4658 Apoptotic ATPase [Sign 98.8 3.8E-09 8.2E-14 123.5 5.6 271 113-404 519-798 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.3E-14 81.3 3.4 60 631-690 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 6.6E-10 1.4E-14 121.8 -1.7 85 608-695 234-322 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 8.5E-09 1.8E-13 79.1 3.8 61 606-666 1-61 (61)
43 KOG0531 Protein phosphatase 1, 98.6 9.5E-09 2.1E-13 112.7 -0.5 106 115-237 70-175 (414)
44 KOG2120 SCF ubiquitin ligase, 98.4 2.2E-09 4.7E-14 104.1 -9.9 159 118-285 186-349 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.6E-13 110.2 -6.2 80 608-691 211-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.6E-08 3.5E-13 98.2 -6.4 181 200-386 185-374 (419)
47 KOG4579 Leucine-rich repeat (L 98.3 4.6E-08 9.9E-13 84.1 -3.6 57 609-667 80-136 (177)
48 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 7E-13 107.0 -7.7 161 110-287 102-292 (1096)
49 KOG4579 Leucine-rich repeat (L 98.2 1.4E-07 3.1E-12 81.2 -2.8 87 607-697 54-141 (177)
50 KOG2982 Uncharacterized conser 98.1 5.2E-07 1.1E-11 87.9 -1.5 41 373-413 222-262 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.0 1.9E-06 4.1E-11 83.0 2.0 42 195-236 87-132 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.0 2.4E-07 5.3E-12 89.0 -3.9 244 269-549 25-316 (388)
53 PRK15386 type III secretion pr 98.0 1.5E-05 3.2E-10 83.9 8.1 76 444-548 48-124 (426)
54 KOG2982 Uncharacterized conser 97.9 8.6E-07 1.9E-11 86.4 -2.5 83 304-386 72-157 (418)
55 PF12799 LRR_4: Leucine Rich r 97.9 7.4E-06 1.6E-10 57.3 2.8 36 631-667 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 4.9E-10 54.9 2.8 37 117-155 1-37 (44)
57 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.4E-10 89.0 1.7 64 269-333 215-281 (699)
58 PRK15386 type III secretion pr 97.5 0.00025 5.4E-09 74.9 8.4 55 485-546 50-104 (426)
59 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.4E-10 88.5 0.7 130 114-254 145-280 (699)
60 KOG4341 F-box protein containi 97.2 1.8E-05 3.8E-10 81.2 -4.3 109 117-234 138-252 (483)
61 KOG1644 U2-associated snRNP A' 97.2 0.0005 1.1E-08 64.0 5.2 84 328-413 43-126 (233)
62 KOG1644 U2-associated snRNP A' 97.1 0.00067 1.5E-08 63.2 5.1 60 117-179 42-101 (233)
63 KOG4341 F-box protein containi 97.0 1.9E-05 4.1E-10 81.1 -6.3 162 113-285 160-331 (483)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00032 6.9E-09 68.2 1.9 68 109-179 35-104 (260)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0045 9.8E-08 55.5 8.0 84 322-409 7-90 (129)
66 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.4E-08 63.5 2.7 94 134-237 35-129 (260)
67 PF13306 LRR_5: Leucine rich r 96.5 0.0082 1.8E-07 53.8 7.1 60 482-544 7-66 (129)
68 KOG2123 Uncharacterized conser 96.3 0.00024 5.2E-09 69.1 -4.0 89 115-217 17-105 (388)
69 KOG2123 Uncharacterized conser 95.8 0.00046 1E-08 67.2 -4.6 80 198-280 39-123 (388)
70 KOG1947 Leucine rich repeat pr 95.7 0.0011 2.4E-08 74.9 -3.3 15 324-338 359-373 (482)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0046 1E-07 35.9 0.5 11 633-643 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0065 1.4E-07 35.2 0.7 21 655-676 1-21 (22)
73 KOG1947 Leucine rich repeat pr 94.1 0.0096 2.1E-07 67.2 -1.3 15 372-386 359-373 (482)
74 KOG0473 Leucine-rich repeat pr 93.4 0.0031 6.6E-08 60.0 -5.7 90 111-214 36-125 (326)
75 KOG4308 LRR-containing protein 93.3 0.00076 1.6E-08 74.2 -11.5 60 609-668 236-304 (478)
76 PF13504 LRR_7: Leucine rich r 91.8 0.1 2.2E-06 28.0 1.2 11 632-642 3-13 (17)
77 KOG0473 Leucine-rich repeat pr 91.5 0.011 2.5E-07 56.3 -4.5 83 606-691 42-124 (326)
78 KOG4308 LRR-containing protein 91.3 0.0018 4E-08 71.2 -11.7 90 117-212 87-184 (478)
79 PF13504 LRR_7: Leucine rich r 90.3 0.17 3.7E-06 27.1 1.2 12 488-499 2-13 (17)
80 smart00370 LRR Leucine-rich re 88.0 0.39 8.5E-06 29.0 1.8 15 654-668 2-16 (26)
81 smart00369 LRR_TYP Leucine-ric 88.0 0.39 8.5E-06 29.0 1.8 15 654-668 2-16 (26)
82 smart00369 LRR_TYP Leucine-ric 87.1 0.57 1.2E-05 28.2 2.2 21 487-508 2-22 (26)
83 smart00370 LRR Leucine-rich re 87.1 0.57 1.2E-05 28.2 2.2 21 487-508 2-22 (26)
84 KOG3864 Uncharacterized conser 85.3 0.16 3.4E-06 47.9 -1.4 87 200-286 101-188 (221)
85 PF13516 LRR_6: Leucine Rich r 84.1 0.21 4.5E-06 29.5 -0.8 13 655-667 3-15 (24)
86 PF13516 LRR_6: Leucine Rich r 83.9 0.22 4.8E-06 29.4 -0.7 16 630-645 2-17 (24)
87 KOG3864 Uncharacterized conser 78.8 0.27 5.7E-06 46.4 -2.5 83 143-233 102-185 (221)
88 smart00364 LRR_BAC Leucine-ric 71.7 2.5 5.4E-05 25.5 1.2 17 631-648 3-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 70.8 3.5 7.6E-05 25.0 1.8 15 653-667 1-15 (26)
90 KOG4242 Predicted myosin-I-bin 62.1 31 0.00067 37.4 7.8 18 352-369 215-232 (553)
91 smart00368 LRR_RI Leucine rich 60.3 7.1 0.00015 24.0 1.8 15 654-668 2-16 (28)
92 KOG3763 mRNA export factor TAP 45.0 10 0.00022 41.7 1.1 63 604-668 216-284 (585)
93 PF04478 Mid2: Mid2 like cell 37.8 18 0.00038 32.7 1.3 16 747-762 50-65 (154)
94 KOG4242 Predicted myosin-I-bin 34.1 2.2E+02 0.0047 31.3 8.7 60 304-363 414-480 (553)
95 TIGR00864 PCC polycystin catio 33.4 25 0.00053 46.8 2.1 34 636-669 1-34 (2740)
96 KOG3763 mRNA export factor TAP 29.6 30 0.00064 38.3 1.6 68 445-526 215-284 (585)
97 PF08693 SKG6: Transmembrane a 29.0 22 0.00048 24.0 0.4 12 748-759 12-23 (40)
98 smart00367 LRR_CC Leucine-rich 28.9 40 0.00086 20.1 1.5 12 142-153 2-13 (26)
99 PF07172 GRP: Glycine rich pro 25.6 59 0.0013 27.1 2.4 22 1-22 1-22 (95)
100 PF15102 TMEM154: TMEM154 prot 24.2 68 0.0015 28.9 2.6 17 759-775 72-88 (146)
101 PF03032 Brevenin: Brevenin/es 20.8 66 0.0014 22.6 1.5 23 3-25 1-23 (46)
102 PF13260 DUF4051: Protein of u 20.3 32 0.00069 23.9 -0.1 17 31-47 28-44 (54)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.1e-74 Score=698.15 Aligned_cols=583 Identities=33% Similarity=0.534 Sum_probs=544.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecc
Q 046398 32 TDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNP 111 (794)
Q Consensus 32 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 111 (794)
.++|++||++||+++.+|.+.+.+|+.+.+||.|.||+|++ .++|+.|++++ +.++|.+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~------------------~~i~~~~~~ 87 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG------------------KNISGKISS 87 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC------------------CCccccCCh
Confidence 56899999999999988888889998778999999999985 57999999998 478899999
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccccc
Q 046398 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLG-SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG 190 (794)
Q Consensus 112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~ 190 (794)
.+..+++|++|+|++|++.+. +|..+. .+++|++|+|++|++++.+|. +.+++|++|++++|. +.+
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~----------~~~ 154 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM----------LSG 154 (968)
T ss_pred HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc----------ccc
Confidence 999999999999999999874 887654 899999999999999988885 578999999999887 556
Q ss_pred CCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhh
Q 046398 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSF 270 (794)
Q Consensus 191 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l 270 (794)
.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|. .++++++|++|+++ ++.+.+.+|..+
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~-~n~l~~~~p~~l 232 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLG-YNNLSGEIPYEI 232 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECc-CCccCCcCChhH
Confidence 8899999999999999999999999999999999999999999999998888 89999999999999 778899999999
Q ss_pred hccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCC
Q 046398 271 VRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350 (794)
Q Consensus 271 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 350 (794)
.++++|+.|++++|.+.+..|..+..++ +|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+.++
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLK-----NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCC-----CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 9999999999999999999999888777 99999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEe
Q 046398 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL 430 (794)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 430 (794)
++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+.+..+..+....+|+.|+
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 9999999999999999999999999999999999999988887 788999999999999999999999999999999999
Q ss_pred cccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhc
Q 046398 431 LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEG 510 (794)
Q Consensus 431 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 510 (794)
+++|.+.+.+|..+..+++|+.|++++|++++ .+|..+..+++|+.|++++|++++.+|.... .
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~---------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~ 450 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG---------------ELPSEFTKLPLVYFLDISNNNLQGRINSRKW-D 450 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeee---------------ECChhHhcCCCCCEEECcCCcccCccChhhc-c
Confidence 99999999999999999999999999998776 4667788899999999999999998888776 6
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceee
Q 046398 511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA 590 (794)
Q Consensus 511 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 590 (794)
+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.++++|
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L---------------------------- 501 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL---------------------------- 501 (968)
T ss_pred CCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc----------------------------
Confidence 9999999999999999888766 46899999999999999999887765555
Q ss_pred EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC
Q 046398 591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI 670 (794)
Q Consensus 591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 670 (794)
+.|++++|++.+.+|..+..+++|++|+|++|.+++.+|..++++++|+.|||++|++++.+
T Consensus 502 ------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 502 ------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred ------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCC
Q 046398 671 SQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPP 717 (794)
Q Consensus 671 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~ 717 (794)
|..+..+++|+.|++++|+++|.+|..+++.++...++.|| .+||.+
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999 899865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.5e-59 Score=566.27 Aligned_cols=515 Identities=31% Similarity=0.475 Sum_probs=469.5
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCccccc-CCccccccccCccccccccccccccccCCCCc
Q 046398 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG-NLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR 195 (794)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~ 195 (794)
.+++.|+|++|.+++. +|..+..+++|++|+|++|++++.+|..+. .+++|++|++++|. +.+.+|.
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~----------l~~~~p~- 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN----------FTGSIPR- 136 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc----------cccccCc-
Confidence 4799999999999985 888999999999999999999988887765 99999999999887 4456664
Q ss_pred cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCC
Q 046398 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE 275 (794)
Q Consensus 196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~ 275 (794)
+.+++|++|++++|.+++..|..++++++|++|++++|.+.+.+|. .+.++++|++|+++ +|.+.+.+|..+.++++
T Consensus 137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLA-SNQLVGQIPRELGQMKS 213 (968)
T ss_pred -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeecc-CCCCcCcCChHHcCcCC
Confidence 5689999999999999999999999999999999999999988888 89999999999999 77888999999999999
Q ss_pred CCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCE
Q 046398 276 LTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTR 355 (794)
Q Consensus 276 L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 355 (794)
|+.|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+.++++|++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLT-----SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCC-----CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 99999999999999999888776 9999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEeccccc
Q 046398 356 LDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH 435 (794)
Q Consensus 356 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 435 (794)
|++++|.+.+.+|..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+..+..+....+|+.|++++|.
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 99999999999999999999999999999999988776 68899999999999999998888888888999999999999
Q ss_pred CCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCc
Q 046398 436 LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLL 515 (794)
Q Consensus 436 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 515 (794)
+.+.+|.++..+++|+.|++++|++.+. +|..+..+++|+.|++++|++++.+|..+. .+++|+
T Consensus 368 l~~~~p~~~~~~~~L~~L~l~~n~l~~~---------------~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~ 431 (968)
T PLN00113 368 LTGEIPEGLCSSGNLFKLILFSNSLEGE---------------IPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVY 431 (968)
T ss_pred eEeeCChhHhCcCCCCEEECcCCEeccc---------------CCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCC
Confidence 9999999999999999999999988764 556677889999999999999988888776 799999
Q ss_pred EEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEe
Q 046398 516 ILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMK 595 (794)
Q Consensus 516 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 595 (794)
.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+.
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-------------------------------------- 473 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-------------------------------------- 473 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--------------------------------------
Confidence 999999999999998888999999999999999888776442
Q ss_pred ccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccccc
Q 046398 596 GSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMS 675 (794)
Q Consensus 596 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 675 (794)
.+.|+.||+++|++++.+|..+..+++|+.|+|++|++++.+|+.++++++|++|+|++|.+++.+|..+.
T Consensus 474 ---------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 474 ---------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ---------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 13458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCcCC
Q 046398 676 SLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCG 715 (794)
Q Consensus 676 ~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~lcg 715 (794)
.+++|+.|++++|+++|.+|.. ..+..+....+.+|.+.|
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999975 445666777788886665
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8e-41 Score=329.84 Aligned_cols=486 Identities=26% Similarity=0.410 Sum_probs=349.4
Q ss_pred ccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccc
Q 046398 100 YMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179 (794)
Q Consensus 100 ~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~ 179 (794)
+..|.+. .+.+.+.++..|++|++++|++. ++|+.++.+..++.|+.++|+++ .+|+.++.+.+|+.|+.++|...
T Consensus 52 ls~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 52 LSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee
Confidence 3334433 34556788888999999999888 57888888888999999999887 78888888999999999888765
Q ss_pred cccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCC
Q 046398 180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259 (794)
Q Consensus 180 ~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~ 259 (794)
.+|++++.+..|..++..+|+++..++ .+..+.+|..+++.+|.+. ..|...+. ++.|++++..
T Consensus 128 -----------el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~-- 191 (565)
T KOG0472|consen 128 -----------ELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN-- 191 (565)
T ss_pred -----------ecCchHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc--
Confidence 788888888889999888888876544 4778888888888888887 44442343 8888888874
Q ss_pred CCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcC
Q 046398 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCI 339 (794)
Q Consensus 260 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 339 (794)
.+.-+.+|+.++.+.+|..|++.+|++.... .+. +++.|++++++.|+|.-...+...+++++.+||+.+|++
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~-----gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIRFLP--EFP-----GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccccCC--CCC-----ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 3456778888888888888888888876422 222 333788888888887754444555788888888888888
Q ss_pred cCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCC--CCCEEECcCCcceeEcC
Q 046398 340 SGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLT--KLTWFSASGNSLILQVN 417 (794)
Q Consensus 340 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~ 417 (794)
+ ..|+.+.-+.+|++||+++|.++ .+|..++++ .|+.|.+.+|.+. ++....+..-+ -|++|.= .+...
T Consensus 265 k-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~d-- 335 (565)
T KOG0472|consen 265 K-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDD-- 335 (565)
T ss_pred c-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccC--
Confidence 7 67787888888888888888887 567778888 7888888888775 33221111100 0111100 00000
Q ss_pred CCCcCccccceEeccccc-CCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccC
Q 046398 418 PNWVPPFQLKTLLLMSCH-LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGD 496 (794)
Q Consensus 418 ~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~ 496 (794)
..... +.=.-..-. ..+.+| ......+.+.|+++.-+++. +|...|.. +.-.-....+++.
T Consensus 336 -glS~s---e~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~-VPdEVfea------------~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 336 -GLSQS---EGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTL-VPDEVFEA------------AKSEIVTSVNFSK 397 (565)
T ss_pred -CCCCC---cccccccCCCCCCccc-chhhhhhhhhhccccccccc-CCHHHHHH------------hhhcceEEEeccc
Confidence 00000 000000000 001112 23445678889999888885 34333321 0112367899999
Q ss_pred CcccccCChhhhhcCCCCcE-EEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcc
Q 046398 497 NEFVGKIPTWMGEGFTSLLI-LILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS 575 (794)
Q Consensus 497 n~l~~~ip~~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 575 (794)
|++. ++|..+.. +..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+..|
T Consensus 398 NqL~-elPk~L~~-lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L------------- 460 (565)
T KOG0472|consen 398 NQLC-ELPKRLVE-LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL------------- 460 (565)
T ss_pred chHh-hhhhhhHH-HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-------------
Confidence 9998 89987763 444444 55555555 488899999999999999999886 677776655444
Q ss_pred cccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCC
Q 046398 576 YFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLIS 655 (794)
Q Consensus 576 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 655 (794)
+.||+|+|+|. .+|..+..+..++.+-.++|++....|+.++++.+
T Consensus 461 ---------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 461 ---------------------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred ---------------------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 88999999998 89999988888888888889999666677999999
Q ss_pred CCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccc
Q 046398 656 IESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691 (794)
Q Consensus 656 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 691 (794)
|.+|||.+|.+. .+|..++++++|++|++.+|++.
T Consensus 507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999999998 58889999999999999999998
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=312.22 Aligned_cols=369 Identities=24% Similarity=0.274 Sum_probs=291.0
Q ss_pred CCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEc
Q 046398 202 LRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281 (794)
Q Consensus 202 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 281 (794)
-+.||+++|+++...+..|.++++|+++++..|.++ .||. ......+|+.|+|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--------------------------f~~~sghl~~L~L 132 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--------------------------FGHESGHLEKLDL 132 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--------------------------ccccccceeEEee
Confidence 456888888888887777778888888888777776 4544 2223334666666
Q ss_pred cCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCC
Q 046398 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361 (794)
Q Consensus 282 ~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 361 (794)
.+|.++....+.+..+. .|+.|||+.|.|+......|..-.++++|+|++|.|+......|.++.+|..|.|++|
T Consensus 133 ~~N~I~sv~se~L~~l~-----alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALP-----ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred eccccccccHHHHHhHh-----hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 67777666666666666 7888888888888776677777788999999999998887888888899999999999
Q ss_pred cccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCC
Q 046398 362 MLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFP 441 (794)
Q Consensus 362 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 441 (794)
+++...+..|.++++|+.|+|..|+|. .+....|.++++|+.+.+..|.+.......|..+.++++|+|..|++...-.
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 998666677888999999999999987 5656688999999999999999888888888888889999999988888888
Q ss_pred cccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccc
Q 046398 442 SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRS 521 (794)
Q Consensus 442 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 521 (794)
.|+-+++.|+.|++|+|.|.. +-++.+..+++|++|+|++|+++ .+++.-+..+..|++|+|++
T Consensus 287 g~lfgLt~L~~L~lS~NaI~r---------------ih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQR---------------IHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred ccccccchhhhhccchhhhhe---------------eecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccc
Confidence 888889999999999998775 35667788889999999999998 67776666788999999999
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhh
Q 046398 522 NKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEY 601 (794)
Q Consensus 522 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 601 (794)
|.++..-...|..+++|+.|||++|.++..+.+.-.-+
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f------------------------------------------ 388 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF------------------------------------------ 388 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh------------------------------------------
Confidence 99887767778888999999999998886665422111
Q ss_pred cccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCC
Q 046398 602 NSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFST 663 (794)
Q Consensus 602 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 663 (794)
..++.|+.|++.+|++..+....|..+.+|++|||.+|.|....|++|..+ .|+.|.+..
T Consensus 389 -~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 389 -NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred -ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 114555778888888876656677888888888888888877777888777 777776654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=312.79 Aligned_cols=367 Identities=24% Similarity=0.224 Sum_probs=191.5
Q ss_pred EEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCC
Q 046398 146 YLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNH 225 (794)
Q Consensus 146 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 225 (794)
.||+++|++...-+..|.++++|+.+++.+|... .+|.......+|+.|+|.+|.|+....+.+..++.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-----------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-----------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-----------hcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 3444444444444444444444444444443332 34444444444444444444444444444444444
Q ss_pred CCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCc
Q 046398 226 LEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASAL 305 (794)
Q Consensus 226 L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L 305 (794)
|+.|||+.|.++ .++...+..-.++++|+|+ +|.++..-...|..+.+|..|.|+.|+++...+..+..+. .|
T Consensus 151 lrslDLSrN~is-~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-----~L 223 (873)
T KOG4194|consen 151 LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-----KL 223 (873)
T ss_pred hhhhhhhhchhh-cccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCHHHhhhcc-----hh
Confidence 444444444444 3333333333444444444 3333333333344444444444444444433333333333 44
Q ss_pred cEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046398 306 ESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385 (794)
Q Consensus 306 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 385 (794)
+.|+|..|+|.-.--..|..+++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-..++.++++|+.|++++|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 44444444443322333444444445555555444333344444444555555555444333344444445555555555
Q ss_pred ccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcc
Q 046398 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP 465 (794)
Q Consensus 386 ~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 465 (794)
.|. .+....+.-+++|++|+++.|.++...+..+..+.+|++|.|+.|.+...-...|..+++|+.|||++|.++..|.
T Consensus 304 aI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 304 AIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 444 3333344444445555555554444444444444455555555555544445556677777778888877765433
Q ss_pred hhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 046398 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN 545 (794)
Q Consensus 466 ~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 545 (794)
+ -...|..+++|+.|++.+|++. .||...+.++++|+.|+|.+|.+..+-|.+|..+ .|++|.++.
T Consensus 383 D------------aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 383 D------------AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred c------------chhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 2 2234667888888888888887 7887777788888888888888887778888877 777776654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.8e-40 Score=322.52 Aligned_cols=465 Identities=24% Similarity=0.355 Sum_probs=350.2
Q ss_pred hhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCc
Q 046398 96 EYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175 (794)
Q Consensus 96 ~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 175 (794)
..+....+.++ ++|++++++..++.|+.++|+++ ++|+.++.+..|+.|+.++|.+. .+|++++.+..|+.|+..+
T Consensus 71 ~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 71 TVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence 34445555654 57889999999999999999999 68999999999999999999998 7889999999999999998
Q ss_pred cccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEE
Q 046398 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID 255 (794)
Q Consensus 176 ~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 255 (794)
|++. .+|..++++.+|..+++.+|++....|..+. |+.|++|+...|.+. .+|. .++.+.+|+.|+
T Consensus 147 N~i~-----------slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 147 NQIS-----------SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPP-ELGGLESLELLY 212 (565)
T ss_pred cccc-----------cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCCh-hhcchhhhHHHH
Confidence 8876 7899999999999999999999998888777 999999999999887 7888 899999999999
Q ss_pred ccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEcc
Q 046398 256 LSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLD 335 (794)
Q Consensus 256 L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 335 (794)
+. .|.+. .+| .|..+..|++++++.|.+.-...+....+. ++..||+.+|+++. .|..+.-+++|..||++
T Consensus 213 L~-~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~-----~l~vLDLRdNklke-~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 213 LR-RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN-----SLLVLDLRDNKLKE-VPDEICLLRSLERLDLS 283 (565)
T ss_pred hh-hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc-----cceeeecccccccc-CchHHHHhhhhhhhccc
Confidence 98 44443 345 889999999999999988754444444554 99999999999985 67888889999999999
Q ss_pred CCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCC---CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcc
Q 046398 336 DNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKIS---HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL 412 (794)
Q Consensus 336 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l 412 (794)
+|.++ .+|..++++ .|+.|-+.+|.+.. +-..+-+.. -|++|.= .+...-+... .-.+-..-+.
T Consensus 284 NN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~~dglS~s--e~~~e~~~t~----- 350 (565)
T KOG0472|consen 284 NNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIKDDGLSQS--EGGTETAMTL----- 350 (565)
T ss_pred CCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhccCCCCCC--cccccccCCC-----
Confidence 99999 578889999 99999999999863 222222211 1333321 1110000000 0000000000
Q ss_pred eeEcCCCCcCccccceEecccccCCCCCCcccCC--CCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCC
Q 046398 413 ILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS--QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE 490 (794)
Q Consensus 413 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~ 490 (794)
.....++.....+.+.|++++-+++....+.|.. -.-.+.++++.|++.+ +|..+..+..+.
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e----------------lPk~L~~lkelv 414 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE----------------LPKRLVELKELV 414 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh----------------hhhhhHHHHHHH
Confidence 0000011122235566666666665433332322 2237889999999875 666665555554
Q ss_pred -EEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccccc
Q 046398 491 -VLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH 569 (794)
Q Consensus 491 -~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 569 (794)
.+.+++|.+. -+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||++.|++. .+|.+...+..+
T Consensus 415 T~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l------- 483 (565)
T KOG0472|consen 415 TDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL------- 483 (565)
T ss_pred HHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH-------
Confidence 4566677664 6666665 7999999999999887 67889999999999999999887 667665443333
Q ss_pred CCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcc
Q 046398 570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN 649 (794)
Q Consensus 570 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 649 (794)
+.+-.++|++....|..++++.+|..|||.+|.+. .||..
T Consensus 484 ---------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 484 ---------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI 523 (565)
T ss_pred ---------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence 44556678888666666999999999999999998 89999
Q ss_pred ccccCCCCEEeCCCCcCc
Q 046398 650 IGNLISIESLDFSTNQLS 667 (794)
Q Consensus 650 l~~l~~L~~L~Ls~N~l~ 667 (794)
++++++|+.|+|++|++.
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-35 Score=321.43 Aligned_cols=465 Identities=27% Similarity=0.341 Sum_probs=260.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN 194 (794)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~ 194 (794)
+.-+|+.||+++|.+. ++|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|..|... .+|.
T Consensus 43 ~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-----------~lP~ 108 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-----------SLPA 108 (1081)
T ss_pred heeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-----------cCch
Confidence 3444888888888887 46777888888888888888877 67777888888888888776654 6788
Q ss_pred ccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccC
Q 046398 195 RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC 274 (794)
Q Consensus 195 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 274 (794)
++..+.+|+.||+++|++.. .|..+..+..++.+..++|.... .++... ++.+++. .+.+.+.++..+..++
T Consensus 109 ~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~-----~lg~~~-ik~~~l~-~n~l~~~~~~~i~~l~ 180 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQ-----RLGQTS-IKKLDLR-LNVLGGSFLIDIYNLT 180 (1081)
T ss_pred hHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhh-----hhcccc-chhhhhh-hhhcccchhcchhhhh
Confidence 88888888888888888744 45557777777777777772111 122222 6666666 4456666666666665
Q ss_pred CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCC
Q 046398 275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT 354 (794)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 354 (794)
. .+++.+|.+.. ..+..+ +.|+.|....|++....- .-++|+.|+.++|.++...+. .--.+|+
T Consensus 181 ~--~ldLr~N~~~~---~dls~~-----~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~ 244 (1081)
T KOG0618|consen 181 H--QLDLRYNEMEV---LDLSNL-----ANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQ 244 (1081)
T ss_pred e--eeecccchhhh---hhhhhc-----cchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccce
Confidence 5 67777777651 112222 266666666666654221 235677777777777633222 1234677
Q ss_pred EEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccc
Q 046398 355 RLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC 434 (794)
Q Consensus 355 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 434 (794)
++++++|+++ .+|++++.+.+|+.++..+|++. .+|. ......+|+.+.+..|.+.. +++...+...|++|++..|
T Consensus 245 ~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 245 YLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhc
Confidence 7777777776 45677777777777777777775 4554 34455666666666665542 2222233344444444444
Q ss_pred cCCCCCCcccCCCCC-CCEEeccCCCCCCCcchhHHhccccceeccCc-ccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398 435 HLGPQFPSWLHSQKN-LSVLDISNARISDTIPRWFWNSIFQLSGIIPE-SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT 512 (794)
Q Consensus 435 ~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 512 (794)
++....+..+.-... |..|+.+.|++.. .|. .=...+.|+.|.+.+|.+++..-..+- ++.
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~----------------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~ 383 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLST----------------LPSYEENNHAALQELYLANNHLTDSCFPVLV-NFK 383 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccc----------------cccccchhhHHHHHHHHhcCcccccchhhhc-ccc
Confidence 443222222222221 3333333333332 110 001233455555555555544333232 455
Q ss_pred CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398 513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592 (794)
Q Consensus 513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 592 (794)
.|++|+|++|++.......+.+++.|+.|+||+|+++ .+|.+..++..|
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L------------------------------ 432 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL------------------------------ 432 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh------------------------------
Confidence 5555555555555444444555555555555555555 444544444444
Q ss_pred EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC-CccccccCCCCEEeCCCCcCcccCc
Q 046398 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI-PENIGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
++|...+|++. ..| ++.+++.|+.+|+|.|+++... |.... -++|++|||++|.-...--
T Consensus 433 ----------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~ 493 (1081)
T KOG0618|consen 433 ----------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDH 493 (1081)
T ss_pred ----------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccch
Confidence 33334444544 344 5555556666666665554321 22211 1555566666555333333
Q ss_pred ccccCCCCCCEEeCcCC
Q 046398 672 QSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 672 ~~l~~l~~L~~L~ls~N 688 (794)
..|..+.++...++.-|
T Consensus 494 ~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 494 KTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhHHhhhhhheecccC
Confidence 44444444444444444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.4e-34 Score=296.84 Aligned_cols=398 Identities=28% Similarity=0.416 Sum_probs=271.8
Q ss_pred CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCc
Q 046398 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR 195 (794)
Q Consensus 116 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~ 195 (794)
++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|+..
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~---------------- 68 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI---------------- 68 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH----------------
Confidence 4556667777777776667777777777777777776665 56666666666666666555432
Q ss_pred cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCC
Q 046398 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE 275 (794)
Q Consensus 196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~ 275 (794)
.. .+.+..++.|+.+.+..|++. ...+|..+.++..
T Consensus 69 ------------------~v-hGELs~Lp~LRsv~~R~N~LK-------------------------nsGiP~diF~l~d 104 (1255)
T KOG0444|consen 69 ------------------SV-HGELSDLPRLRSVIVRDNNLK-------------------------NSGIPTDIFRLKD 104 (1255)
T ss_pred ------------------hh-hhhhccchhhHHHhhhccccc-------------------------cCCCCchhccccc
Confidence 21 112344445555555544443 1235566666666
Q ss_pred CCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCE
Q 046398 276 LTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTR 355 (794)
Q Consensus 276 L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 355 (794)
|+.||+++|++. ..|..+...+++-.|+|++|+|..+...-+.++..|-.
T Consensus 105 Lt~lDLShNqL~------------------------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 105 LTILDLSHNQLR------------------------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred ceeeecchhhhh------------------------------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 666666666554 23444555566667777777776333333456677777
Q ss_pred EEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEeccccc
Q 046398 356 LDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH 435 (794)
Q Consensus 356 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 435 (794)
|||++|++. .+|+.+..+..|+.|+|++|.+. ...-..+..+++|+.|.+++.+-+
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT---------------------- 210 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT---------------------- 210 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch----------------------
Confidence 777777776 56666777777777777777664 111112223333444444433211
Q ss_pred CCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCc
Q 046398 436 LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLL 515 (794)
Q Consensus 436 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 515 (794)
...+|..+..+.+|..+|+|.|.+.. +|+.+.++++|+.|+||+|+|+ ++..... ...+|+
T Consensus 211 -l~N~Ptsld~l~NL~dvDlS~N~Lp~----------------vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lE 271 (1255)
T KOG0444|consen 211 -LDNIPTSLDDLHNLRDVDLSENNLPI----------------VPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLE 271 (1255)
T ss_pred -hhcCCCchhhhhhhhhccccccCCCc----------------chHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhh
Confidence 12467788888999999999998874 7888889999999999999998 6665555 478899
Q ss_pred EEEcccccccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccccccccCCCCcccccccccccccceeeEEEE
Q 046398 516 ILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM 594 (794)
Q Consensus 516 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 594 (794)
+|+|+.|+++ .+|.++++++.|+.|.+.+|+++- -+|..++.+..|
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L-------------------------------- 318 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL-------------------------------- 318 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh--------------------------------
Confidence 9999999998 789999999999999999999863 356666665555
Q ss_pred eccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccc
Q 046398 595 KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSM 674 (794)
Q Consensus 595 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l 674 (794)
+++..++|.+. .+|+.++.+..|+.|.|++|++. .+|+.+.-|+.|+.||+..|.-.-..|.--
T Consensus 319 --------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 319 --------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred --------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 66778888887 89999999999999999999998 899999999999999999998765555433
Q ss_pred cCCCCCCEEeCcCC-----cccccCCC
Q 046398 675 SSLSFLNHLNVSNN-----LLTGKIPS 696 (794)
Q Consensus 675 ~~l~~L~~L~ls~N-----~l~g~iP~ 696 (794)
..-++|+.-++..- .+.|..|.
T Consensus 383 da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 383 DARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred hhhhcceeeecceehhhHHhhccCCcc
Confidence 33356766655532 34565553
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2e-34 Score=312.80 Aligned_cols=474 Identities=22% Similarity=0.295 Sum_probs=380.2
Q ss_pred eecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccc
Q 046398 108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSW 187 (794)
Q Consensus 108 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 187 (794)
.+|..+..-..++.|+++.|-+-..+ -+++.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+.
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-------- 81 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-------- 81 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--------
Confidence 45666666667999999999877432 234455666999999999987 78999999999999999998876
Q ss_pred cccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCc
Q 046398 188 LSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIP 267 (794)
Q Consensus 188 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~ 267 (794)
.+|.+..++.+|++|.|.+|.+. ..|..+..+++|++|+++.|.+. .+|. .+..++.++.+..++| ....
T Consensus 82 ---~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N-~~~~--- 151 (1081)
T KOG0618|consen 82 ---SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNN-EKIQ--- 151 (1081)
T ss_pred ---hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcc-hhhh---
Confidence 78899999999999999999875 45677999999999999999997 6777 7788888888888844 2222
Q ss_pred hhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCc
Q 046398 268 TSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAL 347 (794)
Q Consensus 268 ~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 347 (794)
.++... ++.+++..+.+.+.++..+..+. . .|+|.+|.+. ...+..+++|+.|....|++....
T Consensus 152 -~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~-----~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---- 215 (1081)
T KOG0618|consen 152 -RLGQTS-IKKLDLRLNVLGGSFLIDIYNLT-----H--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---- 215 (1081)
T ss_pred -hhcccc-chhhhhhhhhcccchhcchhhhh-----e--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----
Confidence 222222 78888888988888887777554 3 6999999987 234677889999999999887431
Q ss_pred CCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccc
Q 046398 348 GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLK 427 (794)
Q Consensus 348 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 427 (794)
-..++|+.|+.++|.++...+. ....+|+++++++|+++ .+| .....+.+|+.++..+|.+ ...+..+....+|+
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~ 290 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRL-VALPLRISRITSLV 290 (1081)
T ss_pred ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccceEecccchhH-HhhHHHHhhhhhHH
Confidence 2347899999999999844332 23468999999999998 667 4889999999999999999 45666777788999
Q ss_pred eEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCccc-CCCC-CCCEEEccCCcccccCCh
Q 046398 428 TLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF-KNFS-NLEVLNLGDNEFVGKIPT 505 (794)
Q Consensus 428 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l-~~l~-~L~~L~Ls~n~l~~~ip~ 505 (794)
.|.+..|.+. .+|......+.|++|+|..|++.. +|+.+ .... .|+.|+.+.|++. ..|.
T Consensus 291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~----------------lp~~~l~v~~~~l~~ln~s~n~l~-~lp~ 352 (1081)
T KOG0618|consen 291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS----------------LPDNFLAVLNASLNTLNVSSNKLS-TLPS 352 (1081)
T ss_pred HHHhhhhhhh-hCCCcccccceeeeeeehhccccc----------------cchHHHhhhhHHHHHHhhhhcccc-cccc
Confidence 9999999886 566667889999999999999875 33322 2222 3788888999887 6776
Q ss_pred hhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccc
Q 046398 506 WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585 (794)
Q Consensus 506 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 585 (794)
.-....+.|+.|++.+|.++...-+.+.+.++|+.|+|++|++......++.++..
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~------------------------ 408 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE------------------------ 408 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH------------------------
Confidence 55556788999999999999888778899999999999999997433334444433
Q ss_pred cceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCc
Q 046398 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQ 665 (794)
Q Consensus 586 ~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 665 (794)
|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+
T Consensus 409 ----------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 409 ----------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred ----------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 488999999999 89999999999999999999999 788 79999999999999999
Q ss_pred CcccCcccccCCCCCCEEeCcCCc
Q 046398 666 LSSKISQSMSSLSFLNHLNVSNNL 689 (794)
Q Consensus 666 l~~~~p~~l~~l~~L~~L~ls~N~ 689 (794)
++...-..-..-+.|++||+++|.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCc
Confidence 986433322233899999999997
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-32 Score=283.32 Aligned_cols=356 Identities=25% Similarity=0.369 Sum_probs=263.4
Q ss_pred CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC-CC
Q 046398 265 PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG-PL 343 (794)
Q Consensus 265 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~ 343 (794)
..|.....+++++.|.+...++. .+|+.+..+. +|++|.+++|++.. +...+..++.|+.+.+..|++.. -+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq-----kLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGi 95 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ-----KLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGI 95 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhh-hChHHHHHHh-----hhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCC
Confidence 34444444445555544444443 3444555444 55555555555553 33445566677777777766642 24
Q ss_pred CCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCc
Q 046398 344 PPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPP 423 (794)
Q Consensus 344 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 423 (794)
|..+..+..|+.|||++|++. ..|..+..-.++-+|+|++|+|. +||...|.+++.|-.||+++|.+.. .|+....+
T Consensus 96 P~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL 172 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRL 172 (1255)
T ss_pred Cchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHH
Confidence 555666777777777777776 56666666677777777777776 6666667777777777777776643 34444555
Q ss_pred cccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccC
Q 046398 424 FQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI 503 (794)
Q Consensus 424 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i 503 (794)
..|++|.+++|.+....-..+..+++|+.|.+++.+-+- ..+|.++..+.+|..+|+|.|.+. .+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl--------------~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL--------------DNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh--------------hcCCCchhhhhhhhhccccccCCC-cc
Confidence 667777777776654444445668889999999886542 258889999999999999999998 89
Q ss_pred ChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccc
Q 046398 504 PTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD 583 (794)
Q Consensus 504 p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 583 (794)
|..+. .+++|+.|+|++|+++. +........+|++|++|.|+++ .+|.++..++.|
T Consensus 238 Pecly-~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL--------------------- 293 (1255)
T KOG0444|consen 238 PECLY-KLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL--------------------- 293 (1255)
T ss_pred hHHHh-hhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHH---------------------
Confidence 99988 79999999999999984 3445667789999999999998 789888887777
Q ss_pred cccceeeEEEEeccchhhcccccceeEEEcCCCcccc-ccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCC
Q 046398 584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-EIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFS 662 (794)
Q Consensus 584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls 662 (794)
+.|.+.+|+++- -||..++.+.+|+++..++|.+. ..|+.+..+..|+.|.|+
T Consensus 294 -------------------------~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 294 -------------------------TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred -------------------------HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 555666776642 58999999999999999999998 999999999999999999
Q ss_pred CCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398 663 TNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 663 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
+|++. .+|+.+.-|+-|+.||+..|+=---.|.
T Consensus 348 ~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 348 HNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 99998 4899999999999999999986544443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.8e-22 Score=246.68 Aligned_cols=339 Identities=22% Similarity=0.246 Sum_probs=181.3
Q ss_pred hhhccCCCCEEEccCCCC------CcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCC
Q 046398 269 SFVRLCELTSIDVSDVKL------SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342 (794)
Q Consensus 269 ~l~~l~~L~~L~l~~~~l------~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 342 (794)
.|..+++|+.|.+..+.. ...+|..+..++ .+|+.|.+.++.+.. +|..+ .+.+|+.|++.+|.+. .
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-c
Confidence 455566666665544321 112233333222 256666666665543 34444 3466667777666665 4
Q ss_pred CCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcC
Q 046398 343 LPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422 (794)
Q Consensus 343 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 422 (794)
++..+..+++|+.|+|+++...+.+| .+..+++|+.|++++|.....+|. .+.++++|+.|++++|.....+|... .
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 55555666667777776655444555 355666677777766655445555 46666666677766655444444433 4
Q ss_pred ccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccc--
Q 046398 423 PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFV-- 500 (794)
Q Consensus 423 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~-- 500 (794)
+.+|+.|++++|.....+|.. ..+|+.|++++|.+.. +|..+ .+++|+.|++.++...
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~----------------lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE----------------FPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc----------------ccccc-cccccccccccccchhhc
Confidence 566677777766555555532 3456677777776553 33322 3556666666553321
Q ss_pred -c---cCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccc
Q 046398 501 -G---KIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSY 576 (794)
Q Consensus 501 -~---~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~ 576 (794)
+ .++.......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... ++++|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL-------------- 827 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL-------------- 827 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc--------------
Confidence 0 1111111134567777777776666667777777777777777665444555433 33333
Q ss_pred ccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCC
Q 046398 577 FEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISI 656 (794)
Q Consensus 577 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 656 (794)
+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|
T Consensus 828 --------------------------------~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L 871 (1153)
T PLN03210 828 --------------------------------ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL 871 (1153)
T ss_pred --------------------------------CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence 44555554333333321 234555555555554 455555555555
Q ss_pred CEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 657 ESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 657 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
+.|+|++|+-...+|..+..+++|+.+++++|
T Consensus 872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 55555553333334444455555555555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.3e-21 Score=236.99 Aligned_cols=331 Identities=19% Similarity=0.251 Sum_probs=231.8
Q ss_pred cCCccEEEeeccc------ccccccccccCCC-CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCC
Q 046398 302 ASALESLVFSSSQ------ISGHLTSQLGQFK-SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI 374 (794)
Q Consensus 302 ~~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 374 (794)
+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .++..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccC
Confidence 3378888776553 2334555555553 5888888887776 566665 4578888888888876 566677778
Q ss_pred CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEe
Q 046398 375 SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLD 454 (794)
Q Consensus 375 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 454 (794)
++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..+..+.+|+.|++++|...+.+|..+ ++++|+.|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 8888888887765456663 6677888888888877666677777777788888888876666666654 677888888
Q ss_pred ccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc-------cc
Q 046398 455 ISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD-------GF 527 (794)
Q Consensus 455 Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-------~~ 527 (794)
+++|...+. +|. ..++|+.|++++|.+. .+|..+ .+++|+.|.+.++... ..
T Consensus 711 Lsgc~~L~~---------------~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 711 LSGCSRLKS---------------FPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCCCCCccc---------------ccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccccccc
Confidence 888764432 222 1356778888888876 677655 4677777777764322 11
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccc
Q 046398 528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNL 607 (794)
Q Consensus 528 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 607 (794)
.+......++|+.|++++|...+.+|..++++++|
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L--------------------------------------------- 804 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL--------------------------------------------- 804 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCC---------------------------------------------
Confidence 12223345678888888887777777776665555
Q ss_pred eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN 687 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 687 (794)
+.|++++|...+.+|..+ ++++|+.|+|++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++
T Consensus 805 -~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 805 -EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred -CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 888998886556788776 7899999999998766667654 368999999999998 5888999999999999999
Q ss_pred C-cccccCCC-CCccCccCcccccCC
Q 046398 688 N-LLTGKIPS-STQLQSFDASCFVGN 711 (794)
Q Consensus 688 N-~l~g~iP~-~~~~~~~~~~~~~gn 711 (794)
| ++.+ +|. ...+..+....+.++
T Consensus 879 C~~L~~-l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 879 CNNLQR-VSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCcCc-cCcccccccCCCeeecCCC
Confidence 5 4554 543 344555544444444
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=5.3e-25 Score=218.18 Aligned_cols=375 Identities=24% Similarity=0.279 Sum_probs=238.7
Q ss_pred CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccC-CcccccCCccccCCCCCCeEec
Q 046398 304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSR-NMLNGSIPLSLGKISHLEYLDL 382 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 382 (794)
...+++|..|+|+..++..|+.+++|+.|||++|.|+.+-|.+|.++++|.+|-+.+ |+|+......|+++.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 566777777777777777777777777788877777777777777777777666655 7777555566777777777777
Q ss_pred cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCC------------CCCCcccCCCCCC
Q 046398 383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG------------PQFPSWLHSQKNL 450 (794)
Q Consensus 383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~------------~~~~~~l~~l~~L 450 (794)
.-|++. .+....|..+++|..|.+.+|.+.......+.....++.+.+..|.+. ...|..++...-.
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 777776 555557777777777777777776666666777777777776665521 1122223333333
Q ss_pred CEEeccCCCCCCCcchhHHhccc----------cceeccC-cccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEc
Q 046398 451 SVLDISNARISDTIPRWFWNSIF----------QLSGIIP-ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL 519 (794)
Q Consensus 451 ~~L~Ls~n~l~~~~p~~~~~~~~----------~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L 519 (794)
.-..+.+.++...-+..|..... ...+.-| ..|..+++|++|+|++|+++ .|.+..+++...++.|.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL 305 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence 33333344433322222222110 1112222 23678889999999999998 566666678889999999
Q ss_pred ccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcc--------cc----cccccccc--
Q 046398 520 RSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS--------YF----EVTAYDCE-- 585 (794)
Q Consensus 520 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~--------~~----~~~~~~~~-- 585 (794)
..|++...-...|..+..|+.|+|.+|+|+...|..|..+.+|.+++.-.++..-. +. ......|.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 99998876667788899999999999999988888888888887775433321100 00 00000010
Q ss_pred -cceeeEEE---E----eccchhhc---------ccccce-eEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398 586 -VLEDASIV---M----KGSMVEYN---------SILNLV-RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647 (794)
Q Consensus 586 -~l~~~~~~---~----~~~~~~~~---------~~l~~L-~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 647 (794)
.+..+.+. . .+ .++.. ...+.+ ++...|+..+. .+|..+. ..-.+|++.+|.++ .+|
T Consensus 386 ~~~~~~~~~dv~~~~~~c~-~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp 460 (498)
T KOG4237|consen 386 GFVRQIPISDVAFGDFRCG-GPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVP 460 (498)
T ss_pred chhccccchhccccccccC-CccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccC
Confidence 11111100 0 00 00000 001111 22333444433 4444332 34567899999999 888
Q ss_pred ccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 648 ENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
.+ .+.+| .+|+|+|+++..--..|.++++|.+|-+|||
T Consensus 461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 87 67888 9999999999888888999999999999987
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2.7e-24 Score=213.22 Aligned_cols=277 Identities=25% Similarity=0.273 Sum_probs=160.5
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCc-cccccccccccccccCCC-Cc
Q 046398 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW-SEYALQVHSFSWLSGQIP-NR 195 (794)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~~~~lp-~~ 195 (794)
.-+.++|..|.|+.+ -|..|+.+++||.||||+|.|+.+-|++|.++++|..|-+.+ |+++ .+| ..
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-----------~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-----------DLPKGA 135 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-----------hhhhhH
Confidence 456788888988864 456688899999999999999888888999998887776655 6655 566 45
Q ss_pred cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC---------
Q 046398 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI--------- 266 (794)
Q Consensus 196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~--------- 266 (794)
|++|.+|+.|.+.-|++.-...+.|..+++|..|.+.+|.+. .++...+..+..++.+.+..+..+..--
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 788889999999888888888888899999999999988887 6666678888888888887442221110
Q ss_pred --chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccccc-ccccCCCCCCEEEccCCcCcCCC
Q 046398 267 --PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLT-SQLGQFKSLRTLSLDDNCISGPL 343 (794)
Q Consensus 267 --~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 343 (794)
|..++...-.....+.+.++....+..+.. ...++.+-..+.+...+.-| ..|..+++|++|+|++|+++++-
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c----~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLC----SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhh----hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 111111111111111111111111100000 00011000111111111112 23455555555555555555555
Q ss_pred CCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcc
Q 046398 344 PPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL 412 (794)
Q Consensus 344 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l 412 (794)
+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+ .+....|..+.+|..|.+-.|.+
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcc
Confidence 555555555555555555554333344455555555555555555 33333555555555555555543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.3e-21 Score=219.29 Aligned_cols=270 Identities=26% Similarity=0.314 Sum_probs=159.2
Q ss_pred hhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCC
Q 046398 296 ILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKIS 375 (794)
Q Consensus 296 ~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 375 (794)
.+..|....-..|+++++.++. +|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .+
T Consensus 194 r~~~Cl~~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~ 262 (788)
T PRK15387 194 KMRACLNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PP 262 (788)
T ss_pred HHHHHhcCCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---cc
Confidence 3334444466677888887774 555553 477888888888773 453 2467888888888777 44532 35
Q ss_pred CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEec
Q 046398 376 HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455 (794)
Q Consensus 376 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 455 (794)
+|+.|++++|.+. .+|. ..++|+.|++++|.++. +|. .+++|+.|++
T Consensus 263 sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-------------------------LP~---~p~~L~~LdL 309 (788)
T PRK15387 263 GLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-------------------------LPV---LPPGLQELSV 309 (788)
T ss_pred ccceeeccCCchh-hhhh----chhhcCEEECcCCcccc-------------------------ccc---cccccceeEC
Confidence 7777888877776 3333 12345556666655432 221 1245666666
Q ss_pred cCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCC
Q 046398 456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRL 535 (794)
Q Consensus 456 s~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 535 (794)
++|++++ +|.. ..+|+.|++++|+++ .+|.. ..+|+.|+|++|++++ +|.. .
T Consensus 310 S~N~L~~----------------Lp~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p 361 (788)
T PRK15387 310 SDNQLAS----------------LPAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---P 361 (788)
T ss_pred CCCcccc----------------CCCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---C
Confidence 6666554 2211 124556666666665 45531 2456666666666663 3332 2
Q ss_pred CCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCC
Q 046398 536 TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSK 615 (794)
Q Consensus 536 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 615 (794)
++|+.|++++|+++. +|... ..|+.|++++
T Consensus 362 ~~L~~L~Ls~N~L~~-LP~l~-------------------------------------------------~~L~~LdLs~ 391 (788)
T PRK15387 362 SELYKLWAYNNRLTS-LPALP-------------------------------------------------SGLKELIVSG 391 (788)
T ss_pred cccceehhhcccccc-Ccccc-------------------------------------------------cccceEEecC
Confidence 456666677666652 33211 1235667777
Q ss_pred CccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCC
Q 046398 616 NNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP 695 (794)
Q Consensus 616 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 695 (794)
|+++ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|
T Consensus 392 N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 392 NRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred Cccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 7766 34432 246677777777776 456432 35666777777776 466667777777777777777777666
Q ss_pred C
Q 046398 696 S 696 (794)
Q Consensus 696 ~ 696 (794)
.
T Consensus 463 ~ 463 (788)
T PRK15387 463 Q 463 (788)
T ss_pred H
Confidence 4
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.4e-21 Score=219.19 Aligned_cols=260 Identities=27% Similarity=0.340 Sum_probs=192.8
Q ss_pred CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEE
Q 046398 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS 406 (794)
Q Consensus 327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 406 (794)
.+-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|.. +++|++|++++|+++ .+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----cccccceee
Confidence 45678999999998 6777665 47999999999988 46642 578899999998887 4543 124555555
Q ss_pred CcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC
Q 046398 407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF 486 (794)
Q Consensus 407 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l 486 (794)
+++|.+. .+|.. ..+|+.|++++|+++. +|. ..
T Consensus 269 Ls~N~L~-------------------------~Lp~l---p~~L~~L~Ls~N~Lt~----------------LP~---~p 301 (788)
T PRK15387 269 IFSNPLT-------------------------HLPAL---PSGLCKLWIFGNQLTS----------------LPV---LP 301 (788)
T ss_pred ccCCchh-------------------------hhhhc---hhhcCEEECcCCcccc----------------ccc---cc
Confidence 5555443 22321 2568899999999885 343 24
Q ss_pred CCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398 487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566 (794)
Q Consensus 487 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 566 (794)
++|+.|++++|+++ .+|.. ..+|+.|++++|++++ +|.. ..+|+.|+|++|++++ +|...
T Consensus 302 ~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~lp---------- 361 (788)
T PRK15387 302 PGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTLP---------- 361 (788)
T ss_pred cccceeECCCCccc-cCCCC----cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCCC----------
Confidence 68999999999998 57752 3578999999999985 5532 3589999999999984 44321
Q ss_pred cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC
Q 046398 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI 646 (794)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 646 (794)
.+|+.|++++|+++ .+|.. ..+|+.|+|++|+|+ .+
T Consensus 362 ---------------------------------------~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~L 397 (788)
T PRK15387 362 ---------------------------------------SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SL 397 (788)
T ss_pred ---------------------------------------cccceehhhccccc-cCccc---ccccceEEecCCccc-CC
Confidence 22477899999998 47754 357999999999999 57
Q ss_pred CccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCcCCCC
Q 046398 647 PENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCGPP 717 (794)
Q Consensus 647 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~lcg~~ 717 (794)
|... ++|+.|++++|++++ +|..+ ..|+.|++++|+++ .+|.. ..+..+....+.+|.|+|..
T Consensus 398 P~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 398 PVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 7543 679999999999986 67543 46889999999998 67754 45666667778899888753
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.3e-19 Score=204.67 Aligned_cols=101 Identities=24% Similarity=0.352 Sum_probs=58.5
Q ss_pred cCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCe
Q 046398 300 CGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEY 379 (794)
Q Consensus 300 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 379 (794)
|...+...|+++++.++. +|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.
T Consensus 175 Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~ 245 (754)
T PRK15370 175 CLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQE 245 (754)
T ss_pred hcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccE
Confidence 333456677777776664 343332 46777777777777 4454433 46777777777776 4554442 46777
Q ss_pred EeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398 380 LDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413 (794)
Q Consensus 380 L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~ 413 (794)
|++++|.+. .+|.. +. .+|+.|++++|++.
T Consensus 246 L~Ls~N~L~-~LP~~-l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 246 MELSINRIT-ELPER-LP--SALQSLDLFHNKIS 275 (754)
T ss_pred EECcCCccC-cCChh-Hh--CCCCEEECcCCccC
Confidence 777777766 44442 11 24555555555443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.8e-19 Score=200.91 Aligned_cols=247 Identities=24% Similarity=0.407 Sum_probs=144.1
Q ss_pred CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEE
Q 046398 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS 406 (794)
Q Consensus 327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 406 (794)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|.. + .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPAT-L--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChh-h--hccccEEE
Confidence 45788999999988 4666553 57999999999998 5666553 58999999999887 55542 2 23566666
Q ss_pred CcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC
Q 046398 407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF 486 (794)
Q Consensus 407 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l 486 (794)
+++|.+. .+|..+. .+|+.|++++|+++. +|..+.
T Consensus 248 Ls~N~L~-------------------------~LP~~l~--s~L~~L~Ls~N~L~~----------------LP~~l~-- 282 (754)
T PRK15370 248 LSINRIT-------------------------ELPERLP--SALQSLDLFHNKISC----------------LPENLP-- 282 (754)
T ss_pred CcCCccC-------------------------cCChhHh--CCCCEEECcCCccCc----------------cccccC--
Confidence 6666654 2232221 345566666665553 222221
Q ss_pred CCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398 487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566 (794)
Q Consensus 487 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 566 (794)
++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+
T Consensus 283 ~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---------- 344 (754)
T PRK15370 283 EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL---------- 344 (754)
T ss_pred CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh----------
Confidence 35666666666665 4554322 355666666666653 33322 2456666666666553 33221
Q ss_pred cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC
Q 046398 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI 646 (794)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 646 (794)
.++|+.|++++|+++ .+|..+. ++|+.|+|++|+++ .+
T Consensus 345 --------------------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 345 --------------------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NL 382 (754)
T ss_pred --------------------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CC
Confidence 122356666666665 4554442 46666666666666 45
Q ss_pred CccccccCCCCEEeCCCCcCcccCcccc----cCCCCCCEEeCcCCccc
Q 046398 647 PENIGNLISIESLDFSTNQLSSKISQSM----SSLSFLNHLNVSNNLLT 691 (794)
Q Consensus 647 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~ 691 (794)
|+.+. .+|+.|++++|++++ +|..+ ..++.+..+++.+|+++
T Consensus 383 P~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55443 256666666666663 33332 33456666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.3e-18 Score=185.08 Aligned_cols=67 Identities=27% Similarity=0.339 Sum_probs=32.2
Q ss_pred cCCCCCCCEEEccCCcccccCChhhhh---cCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCcCc
Q 046398 483 FKNFSNLEVLNLGDNEFVGKIPTWMGE---GFTSLLILILRSNKFDGF----LPIQLCRLTSLQILDVANNSLS 549 (794)
Q Consensus 483 l~~l~~L~~L~Ls~n~l~~~ip~~~~~---~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 549 (794)
+..+++|++|++++|.+++.....+.. ..++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 444556666666666655321111111 233555555555555422 1223444556666666666554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=9.5e-19 Score=186.20 Aligned_cols=282 Identities=24% Similarity=0.262 Sum_probs=161.2
Q ss_pred EEEccCCcCcC-CCCCCcCCCCCCCEEEccCCccccc----CCccccCCCCCCeEeccCcccccccCh------hhhcCC
Q 046398 331 TLSLDDNCISG-PLPPALGDLSSLTRLDLSRNMLNGS----IPLSLGKISHLEYLDLSNNKMNGTLSE------IHFVNL 399 (794)
Q Consensus 331 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~------~~~~~l 399 (794)
.|+|..+.+++ ..+..+..+.+|++|+++++.+++. ++..+...+++++++++++.+.+ .+. ..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhc
Confidence 45666666652 2223344556677777777776432 34445556667777777766542 010 123334
Q ss_pred CCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCC---CCCCEEeccCCCCCCCcchhHHhccccce
Q 046398 400 TKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ---KNLSVLDISNARISDTIPRWFWNSIFQLS 476 (794)
Q Consensus 400 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~ 476 (794)
++|+.|++++|. +....+..+..+ ++|++|++++|++++....+
T Consensus 81 ~~L~~L~l~~~~------------------------~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~--------- 127 (319)
T cd00116 81 CGLQELDLSDNA------------------------LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL--------- 127 (319)
T ss_pred CceeEEEccCCC------------------------CChhHHHHHHHHhccCcccEEEeeCCccchHHHHH---------
Confidence 444444444443 332222222222 44888888888776422211
Q ss_pred eccCcccCCC-CCCCEEEccCCcccccCChhh---hhcCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCcC
Q 046398 477 GIIPESFKNF-SNLEVLNLGDNEFVGKIPTWM---GEGFTSLLILILRSNKFDGF----LPIQLCRLTSLQILDVANNSL 548 (794)
Q Consensus 477 ~~~p~~l~~l-~~L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l 548 (794)
+...+..+ ++|+.|++++|.+++.....+ ...+++|+.|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 128 --l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 128 --LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred --HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 22334445 778888888888774322221 12456788888888887742 233445567888888888877
Q ss_pred cccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhc
Q 046398 549 SGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY 628 (794)
Q Consensus 549 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 628 (794)
++.....+.. ....++.|+.|++++|.+++.....+..
T Consensus 206 ~~~~~~~l~~------------------------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 206 TDEGASALAE------------------------------------------TLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred ChHHHHHHHH------------------------------------------HhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 6332221110 1112345678888888877533333322
Q ss_pred -----ccCCCEEeccccccc----ccCCccccccCCCCEEeCCCCcCccc----CcccccCC-CCCCEEeCcCCcc
Q 046398 629 -----LRGLQSLNLSHNIFT----GQIPENIGNLISIESLDFSTNQLSSK----ISQSMSSL-SFLNHLNVSNNLL 690 (794)
Q Consensus 629 -----l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 690 (794)
.+.|++|++++|.++ ..+.+.+..+++|+.+++++|.++.. ....+... +.|+++++.+|++
T Consensus 244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 367888888888876 23344556667888888888888754 44444444 6778888877764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=3.1e-18 Score=150.99 Aligned_cols=185 Identities=26% Similarity=0.502 Sum_probs=149.5
Q ss_pred cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccc
Q 046398 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK 523 (794)
Q Consensus 444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~ 523 (794)
+-.+..++.|.+++|+++. +|..++.+.+|+.|++++|++. ++|..+. .+++|+.|+++-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~----------------vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnr 90 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV----------------VPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNR 90 (264)
T ss_pred ccchhhhhhhhcccCceee----------------cCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhh
Confidence 3456778889999999884 6777888999999999999998 8998887 69999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhc
Q 046398 524 FDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYN 602 (794)
Q Consensus 524 l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 602 (794)
+. ..|..|+.++.|+.||+++|++.. .+|+.|..++.|
T Consensus 91 l~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl---------------------------------------- 129 (264)
T KOG0617|consen 91 LN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL---------------------------------------- 129 (264)
T ss_pred hh-cCccccCCCchhhhhhccccccccccCCcchhHHHHH----------------------------------------
Confidence 87 778999999999999999998864 466666554444
Q ss_pred ccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCC---
Q 046398 603 SILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSF--- 679 (794)
Q Consensus 603 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--- 679 (794)
+.|.|+.|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|+.|++.+|+++- +|..++.+.-
T Consensus 130 ------ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v-lppel~~l~l~~~ 200 (264)
T KOG0617|consen 130 ------RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV-LPPELANLDLVGN 200 (264)
T ss_pred ------HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee-cChhhhhhhhhhh
Confidence 66788888887 88889999999999999999988 889999999999999999999984 5656665542
Q ss_pred CCEEeCcCCcccccCCC
Q 046398 680 LNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 680 L~~L~ls~N~l~g~iP~ 696 (794)
=+.+.+.+|++..+|..
T Consensus 201 k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 201 KQVMRMEENPWVNPIAE 217 (264)
T ss_pred HHHHhhhhCCCCChHHH
Confidence 23455667777666543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=5.9e-18 Score=149.24 Aligned_cols=166 Identities=28% Similarity=0.510 Sum_probs=147.9
Q ss_pred cCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccc
Q 046398 483 FKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAM 562 (794)
Q Consensus 483 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 562 (794)
+.++.+.+.|.+++|+++ .+|..+. .+.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 446778899999999998 8888888 6999999999999998 67889999999999999999987 778888877666
Q ss_pred cccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc-ccChhhhcccCCCEEeccccc
Q 046398 563 ATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-EIPMELTYLRGLQSLNLSHNI 641 (794)
Q Consensus 563 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~ 641 (794)
+.|||++|++.. .+|..|..++.|+.|+|+.|.
T Consensus 105 ----------------------------------------------evldltynnl~e~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 105 ----------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred ----------------------------------------------hhhhccccccccccCCcchhHHHHHHHHHhcCCC
Confidence 778888888864 578888899999999999999
Q ss_pred ccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCCcc
Q 046398 642 FTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQL 700 (794)
Q Consensus 642 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 700 (794)
+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|.++--.|+.+++
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 98 89999999999999999999998 58999999999999999999999887765443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=9.3e-15 Score=166.88 Aligned_cols=116 Identities=34% Similarity=0.603 Sum_probs=103.2
Q ss_pred ceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398 607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686 (794)
Q Consensus 607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 686 (794)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCC--ccCccCcccccCC-CcCCCCCC-CCC
Q 046398 687 NNLLTGKIPSST--QLQSFDASCFVGN-NLCGPPLP-SCT 722 (794)
Q Consensus 687 ~N~l~g~iP~~~--~~~~~~~~~~~gn-~lcg~~~~-~c~ 722 (794)
+|+++|.+|..- .+.......+.+| .+||.|.. .|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999751 1223345568899 89997643 564
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.7e-14 Score=164.69 Aligned_cols=150 Identities=34% Similarity=0.538 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc----ceeeeEecC--CC--CcEEEEEcCCCCCccccccchhhhhcc
Q 046398 30 GCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCC----KWAEVVCSN--LT--GHVLQLSLRNPFRNDLRYATTEYEDYM 101 (794)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~ 101 (794)
.+.++|.+||+++|+++.++.. .+|. +..|| .|.||.|.. .. .+|+.|+|++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~----------------- 427 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN----------------- 427 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCC-----------------
Confidence 4677899999999999976532 4795 44443 799999952 12 2578888877
Q ss_pred ccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccc
Q 046398 102 RSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQ 181 (794)
Q Consensus 102 ~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~ 181 (794)
+.+.|.+|+.+.++++|+.|+|++|.+.+. +|..++.+++|++|+|++|++++.+|+.++++++|++|+|++|.
T Consensus 428 -n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~---- 501 (623)
T PLN03150 428 -QGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS---- 501 (623)
T ss_pred -CCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc----
Confidence 477888888888888888888888888874 78888888888888888888888888877777777777777665
Q ss_pred cccccccccCCCCccCCC-CCCCEEECcCCC
Q 046398 182 VHSFSWLSGQIPNRLGNL-TSLRHLDLSANK 211 (794)
Q Consensus 182 ~~~~~~~~~~lp~~l~~l-~~L~~L~Ls~n~ 211 (794)
+.|.+|..+..+ .++..+++.+|.
T Consensus 502 ------l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 502 ------LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ------ccccCChHHhhccccCceEEecCCc
Confidence 456666666542 345555555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.5e-13 Score=143.60 Aligned_cols=169 Identities=25% Similarity=0.413 Sum_probs=85.3
Q ss_pred eEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhh
Q 046398 428 TLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM 507 (794)
Q Consensus 428 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~ 507 (794)
..+++.|.+. ++|..+..+..|+.+.+..|.+.. +|..++++..|++|||+.|+++ .+|..+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~----------------ip~~i~~L~~lt~l~ls~NqlS-~lp~~l 140 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT----------------IPEAICNLEALTFLDLSSNQLS-HLPDGL 140 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhcccee----------------cchhhhhhhHHHHhhhccchhh-cCChhh
Confidence 3444444443 344444445555555555554442 4455555555555555555554 455554
Q ss_pred hhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccc
Q 046398 508 GEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL 587 (794)
Q Consensus 508 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l 587 (794)
+ .--|+.|.+++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.+|
T Consensus 141 C--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl------------------------- 191 (722)
T KOG0532|consen 141 C--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL------------------------- 191 (722)
T ss_pred h--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-------------------------
Confidence 4 223555555555554 34445555555555555555554 333333333333
Q ss_pred eeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398 588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS 667 (794)
Q Consensus 588 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 667 (794)
+.|.+..|++. .+|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.+.
T Consensus 192 ---------------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 192 ---------------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ---------------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 34444555554 445555533 3555666666665 55555666666666666666555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.8e-11 Score=132.57 Aligned_cols=182 Identities=36% Similarity=0.528 Sum_probs=124.0
Q ss_pred CCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC-CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccc
Q 046398 446 SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS-NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF 524 (794)
Q Consensus 446 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l 524 (794)
..+.++.|++.+|.++. ++......+ +|+.|++++|++. .+|..+. .+++|+.|++++|++
T Consensus 114 ~~~~l~~L~l~~n~i~~----------------i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l 175 (394)
T COG4886 114 ELTNLTSLDLDNNNITD----------------IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDL 175 (394)
T ss_pred cccceeEEecCCccccc----------------Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchh
Confidence 34567777777777765 444444453 7777777777776 5654454 577777788888777
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccc
Q 046398 525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI 604 (794)
Q Consensus 525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (794)
. .+|......+.|+.|++++|++. .+|.....
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~---------------------------------------------- 207 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL---------------------------------------------- 207 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccc-cCchhhhh----------------------------------------------
Confidence 7 34444446777888888888776 33332211
Q ss_pred ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398 605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN 684 (794)
Q Consensus 605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 684 (794)
+..|+++++++|++. .++..+..+..+..+.+++|++. .++..++.+++++.|++++|.++...+ +..+.+++.|+
T Consensus 208 ~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~ 283 (394)
T COG4886 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEe
Confidence 222466777777544 45666777788888888888877 446777888888888888888875433 77888888888
Q ss_pred CcCCcccccCCCC
Q 046398 685 VSNNLLTGKIPSS 697 (794)
Q Consensus 685 ls~N~l~g~iP~~ 697 (794)
+++|.++..+|..
T Consensus 284 ~s~n~~~~~~~~~ 296 (394)
T COG4886 284 LSGNSLSNALPLI 296 (394)
T ss_pred ccCccccccchhh
Confidence 8888888776654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.2e-12 Score=136.87 Aligned_cols=156 Identities=28% Similarity=0.428 Sum_probs=86.0
Q ss_pred CCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEE
Q 046398 439 QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILI 518 (794)
Q Consensus 439 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 518 (794)
.+|..+..+..|+++|++.|+++. +|..++.|+ |+.|-+++|+++ .+|..++ ..+.|..|+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~----------------lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig-~~~tl~~ld 172 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSH----------------LPDGLCDLP-LKVLIVSNNKLT-SLPEEIG-LLPTLAHLD 172 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhc----------------CChhhhcCc-ceeEEEecCccc-cCCcccc-cchhHHHhh
Confidence 345555566666666666666553 455555554 666666666665 5666665 556666666
Q ss_pred cccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccc
Q 046398 519 LRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSM 598 (794)
Q Consensus 519 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 598 (794)
.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++
T Consensus 173 ~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------------------------------- 212 (722)
T KOG0532|consen 173 VSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------------------------------- 212 (722)
T ss_pred hhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------------------------------
Confidence 6666665 34555666666666666666655 2333222111
Q ss_pred hhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcccc---ccCCCCEEeCCCC
Q 046398 599 VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIG---NLISIESLDFSTN 664 (794)
Q Consensus 599 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N 664 (794)
|..||+|+|+++ .||-.|..++.|++|-|.+|.+. ..|..+. ...--++|+..-+
T Consensus 213 ---------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 ---------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 255666666665 56666666666666666666665 4444332 2223345555555
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=8.2e-11 Score=128.87 Aligned_cols=158 Identities=30% Similarity=0.516 Sum_probs=113.0
Q ss_pred CCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccC
Q 046398 449 NLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL 528 (794)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~ 528 (794)
+|+.|++++|++.. +|..+..+++|+.|++++|+++ .+|.... ..++|+.|++++|++. .+
T Consensus 141 nL~~L~l~~N~i~~----------------l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l 201 (394)
T COG4886 141 NLKELDLSDNKIES----------------LPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DL 201 (394)
T ss_pred hcccccccccchhh----------------hhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhheeccCCccc-cC
Confidence 67777777777764 4455677888888888888887 6776554 4778888888888887 45
Q ss_pred CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398 529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV 608 (794)
Q Consensus 529 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L 608 (794)
|........|+++++++|++. ..+..+.+++.+
T Consensus 202 ~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------------------------------------- 234 (394)
T COG4886 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------------------------------------- 234 (394)
T ss_pred chhhhhhhhhhhhhhcCCcce-ecchhhhhcccc----------------------------------------------
Confidence 555555666888888888633 233333333333
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccccc
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMS 675 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 675 (794)
..+.+++|++. .++..++.+++++.|++++|.++ .++. ++.+.+++.|++++|.++..+|....
T Consensus 235 ~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 235 SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhc
Confidence 45557777776 33667788888999999999998 5555 88889999999999999877665543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.9e-11 Score=123.01 Aligned_cols=210 Identities=22% Similarity=0.233 Sum_probs=131.1
Q ss_pred ccceEecccccCCCCCC-cccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccC
Q 046398 425 QLKTLLLMSCHLGPQFP-SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI 503 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i 503 (794)
+|+.+.+.++....... .....+++++.||++.|-+..-- .+......+|+|+.|+++.|++.-..
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------PVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-------------HHHHHHHhcccchhcccccccccCCc
Confidence 44444444444332111 34556778888888888655311 12233446778888888888876433
Q ss_pred ChhhhhcCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccc
Q 046398 504 PTWMGEGFTSLLILILRSNKFDGF-LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAY 582 (794)
Q Consensus 504 p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 582 (794)
....-..++.|+.|.|++|.++.. +......+|+|+.|+|..|...+.-...
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--------------------------- 241 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--------------------------- 241 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---------------------------
Confidence 333333567788888888887632 2223446778888888887522111111
Q ss_pred ccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc-ChhhhcccCCCEEeccccccccc-CCcc-----ccccCC
Q 046398 583 DCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI-PMELTYLRGLQSLNLSHNIFTGQ-IPEN-----IGNLIS 655 (794)
Q Consensus 583 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~-ip~~-----l~~l~~ 655 (794)
...+..|+.|||++|++...- -...+.++.|+.|+++.+.++.. +|+. ....++
T Consensus 242 -------------------~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 242 -------------------TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred -------------------hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 122445688899999886321 14567888999999999988742 2443 456789
Q ss_pred CCEEeCCCCcCccc-CcccccCCCCCCEEeCcCCccccc
Q 046398 656 IESLDFSTNQLSSK-ISQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 656 L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
|++|++++|++..- .-..+..+.+|+.|.+-.|+++.+
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99999999998531 113455677888888888888754
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=7.8e-11 Score=116.84 Aligned_cols=260 Identities=28% Similarity=0.322 Sum_probs=136.3
Q ss_pred ccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCCCCC----CCcccccCCccccccccCccccccccc
Q 046398 111 PSLVDLKHLTHLDLSGNDFQGI---RIPKYLGSLKNLRYLNLSGAEFAG----IIPHQLGNLSNLRCLDLSWSEYALQVH 183 (794)
Q Consensus 111 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~~~~~~~~~ 183 (794)
+.+..+..++.++||+|.|... .+...+.+.++|+..++|.- ++| .+|+.+..
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~------------------- 83 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM------------------- 83 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH-------------------
Confidence 4455677777777777776531 12334555667777776653 222 23322110
Q ss_pred cccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc----ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCC
Q 046398 184 SFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW----LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259 (794)
Q Consensus 184 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~ 259 (794)
+.+.+..+++|++||||.|-+....+.. +..+..|++|.|.+|.+. ......++ ..|..|..
T Consensus 84 --------l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~--~al~~l~~--- 149 (382)
T KOG1909|consen 84 --------LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLG--RALFELAV--- 149 (382)
T ss_pred --------HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHH--HHHHHHHH---
Confidence 1123344567777777777766554433 345566777777666653 11100000 00111110
Q ss_pred CCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc----ccccccCCCCCCEEEcc
Q 046398 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH----LTSQLGQFKSLRTLSLD 335 (794)
Q Consensus 260 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~ 335 (794)
......-++|+.+...+|.+.......+...- ...+.|+.+.+..|.|... ....+..+++|+.|||.
T Consensus 150 -------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~-~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 150 -------NKKAASKPKLRVFICGRNRLENGGATALAEAF-QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR 221 (382)
T ss_pred -------HhccCCCcceEEEEeeccccccccHHHHHHHH-HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc
Confidence 01122334566666666666544333322111 1123667777776665421 22345667788888888
Q ss_pred CCcCcCC----CCCCcCCCCCCCEEEccCCcccccCCccc-----cCCCCCCeEeccCcccccc---cChhhhcCCCCCC
Q 046398 336 DNCISGP----LPPALGDLSSLTRLDLSRNMLNGSIPLSL-----GKISHLEYLDLSNNKMNGT---LSEIHFVNLTKLT 403 (794)
Q Consensus 336 ~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~ 403 (794)
+|.++.. +...+..+++|++|++++|.+...-..++ ...|+|++|.+.+|.++.. .-.......+.|.
T Consensus 222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 8777643 22345556777888888777764332222 2357777787777777521 1112334456666
Q ss_pred EEECcCCcc
Q 046398 404 WFSASGNSL 412 (794)
Q Consensus 404 ~L~ls~n~l 412 (794)
.|++++|.+
T Consensus 302 kLnLngN~l 310 (382)
T KOG1909|consen 302 KLNLNGNRL 310 (382)
T ss_pred HhcCCcccc
Confidence 666666665
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.5e-10 Score=111.89 Aligned_cols=131 Identities=23% Similarity=0.284 Sum_probs=87.6
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398 512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591 (794)
Q Consensus 512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 591 (794)
..|+.+||++|.++ .+.++..-.|.++.|++|+|.+... .++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL-------------------------------- 325 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL-------------------------------- 325 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh--------------------------------
Confidence 34666777777666 3445555666777777777766521 111
Q ss_pred EEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC-
Q 046398 592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI- 670 (794)
Q Consensus 592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~- 670 (794)
..+++|+.||||+|.++ .+...-..+-+++.|+|+.|.|... +.++.+-+|..||+++|+|...-
T Consensus 326 -----------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 326 -----------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred -----------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH
Confidence 12344577777777776 3443444567788888888887633 55778888888888888886532
Q ss_pred cccccCCCCCCEEeCcCCcccccC
Q 046398 671 SQSMSSLSFLNHLNVSNNLLTGKI 694 (794)
Q Consensus 671 p~~l~~l~~L~~L~ls~N~l~g~i 694 (794)
-..+++|+.|+.+.|.+|++.+.+
T Consensus 392 V~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 392 VNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hcccccccHHHHHhhcCCCccccc
Confidence 246788888999999999888764
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=1.1e-10 Score=115.94 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=89.1
Q ss_pred CCCCCCeEeccCcccccccC---hhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCC
Q 046398 373 KISHLEYLDLSNNKMNGTLS---EIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKN 449 (794)
Q Consensus 373 ~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 449 (794)
.-+.|+++...+|++...-. ...|...+.|+.+.++.|.+..... ......+..+++
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--------------------~al~eal~~~~~ 214 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--------------------TALAEALEHCPH 214 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--------------------HHHHHHHHhCCc
Confidence 34566667666666642110 1134444555555555554321100 012334667788
Q ss_pred CCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhh----hhcCCCCcEEEccccccc
Q 046398 450 LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM----GEGFTSLLILILRSNKFD 525 (794)
Q Consensus 450 L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~----~~~l~~L~~L~L~~n~l~ 525 (794)
|+.|||.+|.++..-.. .+...+..+++|+.|++++|.+...-...+ ....|+|++|.+.+|.++
T Consensus 215 LevLdl~DNtft~egs~-----------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 215 LEVLDLRDNTFTLEGSV-----------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ceeeecccchhhhHHHH-----------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 88888888877642221 233456677888899999888765443332 335688999999999887
Q ss_pred cc----CCccccCCCCCCEEEccCCcCc
Q 046398 526 GF----LPIQLCRLTSLQILDVANNSLS 549 (794)
Q Consensus 526 ~~----~p~~~~~l~~L~~L~Ls~N~l~ 549 (794)
.. +...+...+.|..|+|++|++.
T Consensus 284 ~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 284 RDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 42 2334556889999999999984
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3e-10 Score=109.83 Aligned_cols=127 Identities=28% Similarity=0.247 Sum_probs=58.8
Q ss_pred CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398 304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS 383 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 383 (794)
.|+++||++|.|+. +.++..-.|.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-..+-+++.|.|+
T Consensus 285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 34444444444442 223333345555555555555422 22444555555555555554 222233344455555555
Q ss_pred CcccccccChhhhcCCCCCCEEECcCCcceeE-cCCCCcCccccceEecccccCC
Q 046398 384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQ-VNPNWVPPFQLKTLLLMSCHLG 437 (794)
Q Consensus 384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~ 437 (794)
.|.+. .++ .+..+.+|..||+++|++... ....++.++.|+.+.+.+|.+.
T Consensus 361 ~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55544 222 234444555555555554322 1223445555555555555554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=8.2e-10 Score=128.98 Aligned_cols=270 Identities=26% Similarity=0.303 Sum_probs=140.0
Q ss_pred CCCCEEeCCCCC--CCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398 117 KHLTHLDLSGND--FQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN 194 (794)
Q Consensus 117 ~~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~ 194 (794)
+.|++|-+..|. +..+ -+++|..++.|++|||++|.=-+.+|+.+++|-+||+|+++++.+. .+|.
T Consensus 545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-----------~LP~ 612 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-----------HLPS 612 (889)
T ss_pred CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-----------ccch
Confidence 356666666664 3322 2344666777777777776555567777777777777777766654 6777
Q ss_pred ccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCC-CCCccccCCCCCCcEEEccCCCCCCCCCchhhhcc
Q 046398 195 RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG-TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL 273 (794)
Q Consensus 195 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l 273 (794)
.+++|.+|.+|++..+.....++.....|++|++|.+....... ......+.++..|+.+...... ..+...+..+
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~~~ 689 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---VLLLEDLLGM 689 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---hHhHhhhhhh
Confidence 77777777777777665555556656667777777776554211 1111123344444444443111 0111111112
Q ss_pred CCCC----EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccC------CCCCCEEEccCCcCcCCC
Q 046398 274 CELT----SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ------FKSLRTLSLDDNCISGPL 343 (794)
Q Consensus 274 ~~L~----~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~ 343 (794)
.+|. .+.+..+... ..+..+. .+.+|+.|.+.++.+.......... ++++..+.+.++... ..
T Consensus 690 ~~L~~~~~~l~~~~~~~~-~~~~~~~-----~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~ 762 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKR-TLISSLG-----SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RD 762 (889)
T ss_pred HHHHHHhHhhhhcccccc-eeecccc-----cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cc
Confidence 2211 1111111110 0111112 2337777887777765433222111 233333333343332 23
Q ss_pred CCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECc
Q 046398 344 PPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408 (794)
Q Consensus 344 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls 408 (794)
+.+....++|+.|.+..+.....+.+....+..++.+.+..+.+.+.--....+.++++..+.+.
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 33344568899999988877766666666667777666666666543111133444444444443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.2e-09 Score=102.10 Aligned_cols=109 Identities=34% Similarity=0.447 Sum_probs=28.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccC
Q 046398 113 LVDLKHLTHLDLSGNDFQGIRIPKYLG-SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQ 191 (794)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~ 191 (794)
+.+..++++|+|++|.|+.+ +.++ .+.+|+.|+|++|.++.. +.+..+++|++|++++|++. .
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-----------~ 78 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-----------S 78 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS--------------S
T ss_pred cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-----------c
Confidence 34445677777777777643 2344 466777777777777632 23555666666666666544 2
Q ss_pred CCCcc-CCCCCCCEEECcCCCCCCCC-CccccCCCCCCeEeeeccCCC
Q 046398 192 IPNRL-GNLTSLRHLDLSANKFNSTT-AGWLSKFNHLEFLSLSSNGLQ 237 (794)
Q Consensus 192 lp~~l-~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 237 (794)
+...+ ..+++|++|++++|++.... -..+..+++|++|++.+|++.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 33223 23566666666666654422 133445555555555555543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=3e-09 Score=99.46 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=32.7
Q ss_pred eeEEEcCCCccccccChhh-hcccCCCEEecccccccccC-CccccccCCCCEEeCCCCcCcccC---cccccCCCCCCE
Q 046398 608 VRIIDVSKNNFSGEIPMEL-TYLRGLQSLNLSHNIFTGQI-PENIGNLISIESLDFSTNQLSSKI---SQSMSSLSFLNH 682 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~ 682 (794)
|+.|++++|+++ .+++.+ ..+++|++|+|++|+|...- -..+..+++|+.|+|.+|+++... ...+..+|+|+.
T Consensus 66 L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 66 LKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp --EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred hhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 356666666665 343334 35677777777777776321 134666777788888888776431 123556778888
Q ss_pred EeCc
Q 046398 683 LNVS 686 (794)
Q Consensus 683 L~ls 686 (794)
||-.
T Consensus 145 LD~~ 148 (175)
T PF14580_consen 145 LDGQ 148 (175)
T ss_dssp ETTE
T ss_pred eCCE
Confidence 7743
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=6.5e-10 Score=113.40 Aligned_cols=211 Identities=27% Similarity=0.245 Sum_probs=128.4
Q ss_pred cCCccccccccCccccccccccccccccCCC--CccCCCCCCCEEECcCCCCCCCCC--ccccCCCCCCeEeeeccCCCC
Q 046398 163 GNLSNLRCLDLSWSEYALQVHSFSWLSGQIP--NRLGNLTSLRHLDLSANKFNSTTA--GWLSKFNHLEFLSLSSNGLQG 238 (794)
Q Consensus 163 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp--~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~ 238 (794)
+++++|+...|.++... ..+ .....|++++.||||.|-+....+ .....+|+|+.|+++.|.+..
T Consensus 118 sn~kkL~~IsLdn~~V~-----------~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-----------DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred hhHHhhhheeecCcccc-----------ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 56888888888776654 222 356678999999999987765432 345678899999999888763
Q ss_pred CCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc
Q 046398 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH 318 (794)
Q Consensus 239 ~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 318 (794)
......-. .+++|+.|.++.|.++...-.++. ..+|+|+.|+|..|.....
T Consensus 187 ~~~s~~~~-------------------------~l~~lK~L~l~~CGls~k~V~~~~----~~fPsl~~L~L~~N~~~~~ 237 (505)
T KOG3207|consen 187 FISSNTTL-------------------------LLSHLKQLVLNSCGLSWKDVQWIL----LTFPSLEVLYLEANEIILI 237 (505)
T ss_pred Cccccchh-------------------------hhhhhheEEeccCCCCHHHHHHHH----HhCCcHHHhhhhcccccce
Confidence 32221111 344667777777777632222211 1234777888877753333
Q ss_pred ccccccCCCCCCEEEccCCcCcCCC-CCCcCCCCCCCEEEccCCccccc-CCcc-----ccCCCCCCeEeccCccccccc
Q 046398 319 LTSQLGQFKSLRTLSLDDNCISGPL-PPALGDLSSLTRLDLSRNMLNGS-IPLS-----LGKISHLEYLDLSNNKMNGTL 391 (794)
Q Consensus 319 ~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~ 391 (794)
.......+..|++|||++|.+.... -...+.++.|+.|+++.+.+... .|+. ...+++|++|++..|++..--
T Consensus 238 ~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 238 KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 3333444667888888888776321 13356677888888888877632 2222 245677888888888875222
Q ss_pred ChhhhcCCCCCCEEECcCCcce
Q 046398 392 SEIHFVNLTKLTWFSASGNSLI 413 (794)
Q Consensus 392 ~~~~~~~l~~L~~L~ls~n~l~ 413 (794)
....+..+++|+.+.+..|.+.
T Consensus 318 sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 318 SLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhccchhhhhhccccccc
Confidence 2223444555666665555553
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.81 E-value=5.1e-09 Score=73.27 Aligned_cols=39 Identities=44% Similarity=0.916 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCCCC--CCCcceeeeEec
Q 046398 33 DSEREALLKLKQDLK-DPSNRLGSWVVD--GDCCKWAEVVCS 71 (794)
Q Consensus 33 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~--~~~c~w~gv~c~ 71 (794)
++|++||++||+++. +|.+.+.+|+.. .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 577899999855 799999999995
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=3.8e-09 Score=123.52 Aligned_cols=271 Identities=22% Similarity=0.222 Sum_probs=165.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCC--CCCCCcccccCCccccccccCcccccccccccccccc
Q 046398 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAE--FAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG 190 (794)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~ 190 (794)
..+....|...+.+|.+. .++.... .++|++|-+..|. +....++.|..++.|++|||++|. --+
T Consensus 519 ~~~~~~~rr~s~~~~~~~--~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~----------~l~ 585 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE--HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS----------SLS 585 (889)
T ss_pred ccchhheeEEEEeccchh--hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC----------ccC
Confidence 445577889999999887 3455443 4589999999996 554555568899999999999865 335
Q ss_pred CCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCC-CCCCCCchh
Q 046398 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF-ELGGPIPTS 269 (794)
Q Consensus 191 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~ 269 (794)
.+|..+++|-+||+|++++..+. ..|..+.++++|.+|++..+.-...++. ....+++|++|.+.... ..+...-..
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHh
Confidence 89999999999999999999987 6677899999999999998876545544 56679999999997443 333333445
Q ss_pred hhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCC
Q 046398 270 FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349 (794)
Q Consensus 270 l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 349 (794)
+.++.+|+.+....... .+-..+..... -....+.+.+.++.. ...+..+..+.+|+.|.+.++.+......+...
T Consensus 664 l~~Le~L~~ls~~~~s~--~~~e~l~~~~~-L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~ 739 (889)
T KOG4658|consen 664 LENLEHLENLSITISSV--LLLEDLLGMTR-LRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEES 739 (889)
T ss_pred hhcccchhhheeecchh--HhHhhhhhhHH-HHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccc
Confidence 55666666665543332 00011100000 000112222222222 133455667788888888888776433222211
Q ss_pred ------CCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCE
Q 046398 350 ------LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404 (794)
Q Consensus 350 ------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 404 (794)
++++..+.+.++... ..+.+..-.++|+.|.+..+.....+.. ....+..++.
T Consensus 740 ~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~ 798 (889)
T KOG4658|consen 740 LIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKE 798 (889)
T ss_pred cchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCC-HHHHhhhccc
Confidence 122333333333222 1222333457788888877766544333 2333344443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3.4e-09 Score=81.31 Aligned_cols=60 Identities=42% Similarity=0.554 Sum_probs=38.1
Q ss_pred CCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398 631 GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690 (794)
Q Consensus 631 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 690 (794)
+|++|++++|+++...++.|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666644445666666666666666666666666666666666666666654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=6.6e-10 Score=121.79 Aligned_cols=85 Identities=25% Similarity=0.269 Sum_probs=54.6
Q ss_pred eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCccc---Cccc-ccCCCCCCEE
Q 046398 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK---ISQS-MSSLSFLNHL 683 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L 683 (794)
|+.+++++|.+. .++..+..+..+..|++++|++... ..+.....+..+..+.|.+... .... ....+.+..+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 356677777766 3335566677777888888877643 3355566677777777776531 1121 4556777888
Q ss_pred eCcCCcccccCC
Q 046398 684 NVSNNLLTGKIP 695 (794)
Q Consensus 684 ~ls~N~l~g~iP 695 (794)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888887776655
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=8.5e-09 Score=79.08 Aligned_cols=61 Identities=31% Similarity=0.461 Sum_probs=56.3
Q ss_pred cceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcC
Q 046398 606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQL 666 (794)
Q Consensus 606 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 666 (794)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4679999999999977678899999999999999999988888999999999999999986
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=9.5e-09 Score=112.71 Aligned_cols=106 Identities=33% Similarity=0.453 Sum_probs=56.0
Q ss_pred CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN 194 (794)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~ 194 (794)
.+..++.+++..|.+.. +-..+..+++|.+|++.+|+|... ...+..+++|++|++++|.+. . -.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-----------~-i~ 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-----------K-LE 134 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-----------c-cc
Confidence 45566666666666663 234456666777777777766632 222555666666666655543 1 12
Q ss_pred ccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCC
Q 046398 195 RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237 (794)
Q Consensus 195 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 237 (794)
.+..++.|+.|++++|.++.... +..++.|+.+++++|.+.
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred chhhccchhhheeccCcchhccC--CccchhhhcccCCcchhh
Confidence 23344445555555555543322 333445555555555444
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.2e-09 Score=104.07 Aligned_cols=159 Identities=22% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccC
Q 046398 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197 (794)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~ 197 (794)
+|++||||+..++...+-..+..+.+|+.|.|.++++.+.+...+.+-.+|+.|+++.+.-. -+..+.--+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~--------t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF--------TENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc--------chhHHHHHHH
Confidence 47777777777664434444566777777777777777777777777777777777655421 0001112345
Q ss_pred CCCCCCEEECcCCCCCCCCCcc-ccC-CCCCCeEeeeccCCC---CCCCccccCCCCCCcEEEccCCCCCCCCCchhhhc
Q 046398 198 NLTSLRHLDLSANKFNSTTAGW-LSK-FNHLEFLSLSSNGLQ---GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR 272 (794)
Q Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~~-l~~-l~~L~~L~L~~n~l~---~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~ 272 (794)
+++.|..|+++.|.+....... +.. -++|+.|+++++.-. ..+.. -...+++|.+|||+.+..++......|.+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHh
Confidence 6677777777776554332211 111 145666666654311 01111 22355666666666555555544455555
Q ss_pred cCCCCEEEccCCC
Q 046398 273 LCELTSIDVSDVK 285 (794)
Q Consensus 273 l~~L~~L~l~~~~ 285 (794)
++.|++|.++.|.
T Consensus 337 f~~L~~lSlsRCY 349 (419)
T KOG2120|consen 337 FNYLQHLSLSRCY 349 (419)
T ss_pred cchheeeehhhhc
Confidence 5555555555543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1.2e-08 Score=110.18 Aligned_cols=80 Identities=35% Similarity=0.361 Sum_probs=40.6
Q ss_pred eeEEEcCCCccccccChh-hhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc-ccccCCCCCCEEeC
Q 046398 608 VRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS-QSMSSLSFLNHLNV 685 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l 685 (794)
|+.|||++|.+. .+|.. ...+ .|+.|+|++|.++.. ..+.+|.+|+-||+++|-|++.-. .-+..|.+|+.|+|
T Consensus 211 LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 211 LKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred ccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 355555555554 23321 1122 266666666666532 335566666666666666654211 11334555666666
Q ss_pred cCCccc
Q 046398 686 SNNLLT 691 (794)
Q Consensus 686 s~N~l~ 691 (794)
.+|++.
T Consensus 287 eGNPl~ 292 (1096)
T KOG1859|consen 287 EGNPLC 292 (1096)
T ss_pred cCCccc
Confidence 666654
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.6e-08 Score=98.21 Aligned_cols=181 Identities=24% Similarity=0.263 Sum_probs=113.9
Q ss_pred CCCCEEECcCCCCCCCC-CccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCch-hhhccCCCC
Q 046398 200 TSLRHLDLSANKFNSTT-AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT-SFVRLCELT 277 (794)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~l~~l~~L~ 277 (794)
+.|++||||...++... ...+..+.+|+.|.+.++++.+.|.. .+++-.+|+.|+++..+.++..-.. -+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34777777776665322 23356677888888888888777666 6777788888888766555543222 356788888
Q ss_pred EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc---ccccccccCCCCCCEEEccCCcC-cCCCCCCcCCCCCC
Q 046398 278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS---GHLTSQLGQFKSLRTLSLDDNCI-SGPLPPALGDLSSL 353 (794)
Q Consensus 278 ~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L 353 (794)
.|+++.|.+..+.-..+- .+-.++|+.|+++++.-. ..+..-...+++|.+|||++|.. +......|.+++.|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V---~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAV---AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hcCchHhhccchhhhHHH---hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 888888877654422211 112237778888776311 11122234578888888887643 33233345677888
Q ss_pred CEEEccCCcccccCCc---cccCCCCCCeEeccCcc
Q 046398 354 TRLDLSRNMLNGSIPL---SLGKISHLEYLDLSNNK 386 (794)
Q Consensus 354 ~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~N~ 386 (794)
++|.++.|.. .+|. .+...|+|.+|++.++-
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 8888888764 3443 34566788888877654
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=4.6e-08 Score=84.13 Aligned_cols=57 Identities=32% Similarity=0.503 Sum_probs=27.9
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS 667 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 667 (794)
+.+++++|+++ .+|.++..++.|+.||++.|.+. ..|.-+..|.++-.||.-+|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 44444555554 44444555555555555555554 34444444555555555544443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=3.2e-08 Score=107.02 Aligned_cols=161 Identities=25% Similarity=0.349 Sum_probs=87.9
Q ss_pred cccccCCCCCCEEeCCCCCCCCCC----CC--------------------cccCC------CCCCCEEEcCCCCCCCCCc
Q 046398 110 NPSLVDLKHLTHLDLSGNDFQGIR----IP--------------------KYLGS------LKNLRYLNLSGAEFAGIIP 159 (794)
Q Consensus 110 ~~~l~~l~~L~~L~Ls~n~l~~~~----~p--------------------~~~~~------l~~L~~L~Ls~n~l~~~~p 159 (794)
|-++..+..||+|.|.++.+.... +- ...+. ...|...+.++|.+. ...
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 556888999999999998775320 00 00000 012455556666655 344
Q ss_pred ccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC
Q 046398 160 HQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT 239 (794)
Q Consensus 160 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 239 (794)
.++.-++.|++|||++|++. . .+.+..|++|++|||++|.+....--....+. |+.|.+++|.++.
T Consensus 181 ~SLqll~ale~LnLshNk~~-----------~-v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t- 246 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFT-----------K-VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT- 246 (1096)
T ss_pred HHHHHHHHhhhhccchhhhh-----------h-hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh-
Confidence 55556666677777666653 1 22455666677777777766555443333333 6666666666552
Q ss_pred CCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCC
Q 046398 240 ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLS 287 (794)
Q Consensus 240 i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 287 (794)
+. ++.++.+|+.||+++|......-...+..+..|+.|.|.+|.+.
T Consensus 247 L~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 LR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 11 45566666666666332222222223444455555666665554
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1.4e-07 Score=81.16 Aligned_cols=87 Identities=24% Similarity=0.406 Sum_probs=70.7
Q ss_pred ceeEEEcCCCccccccChhhh-cccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeC
Q 046398 607 LVRIIDVSKNNFSGEIPMELT-YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV 685 (794)
Q Consensus 607 ~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 685 (794)
.|+.++|++|.+. ..|+.|. ..+.++.|+|++|.|+ .+|+++..++.|+.|+++.|.+.. .|..+..|.+|..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcC
Confidence 3477899999998 4555554 4468999999999999 889999999999999999999985 5666777889999998
Q ss_pred cCCcccccCCCC
Q 046398 686 SNNLLTGKIPSS 697 (794)
Q Consensus 686 s~N~l~g~iP~~ 697 (794)
-+|... +||..
T Consensus 131 ~~na~~-eid~d 141 (177)
T KOG4579|consen 131 PENARA-EIDVD 141 (177)
T ss_pred CCCccc-cCcHH
Confidence 888764 66654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=5.2e-07 Score=87.91 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred CCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398 373 KISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413 (794)
Q Consensus 373 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~ 413 (794)
.++.+..|+|+.|++..--....+.+++.|..|.++++++.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 33444455555555543222334455555555555555543
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=1.9e-06 Score=83.00 Aligned_cols=42 Identities=36% Similarity=0.415 Sum_probs=24.1
Q ss_pred ccCCCCCCCEEECcCCCCCCCCCcc----ccCCCCCCeEeeeccCC
Q 046398 195 RLGNLTSLRHLDLSANKFNSTTAGW----LSKFNHLEFLSLSSNGL 236 (794)
Q Consensus 195 ~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l 236 (794)
.+.+|++|+..+||.|.|....|+. +++-+.|++|.+++|.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3445666666666666665554433 33445566666666554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=2.4e-07 Score=88.95 Aligned_cols=244 Identities=19% Similarity=0.205 Sum_probs=133.9
Q ss_pred hhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccc---cccc-------cccccCCCCCCEEEccCCc
Q 046398 269 SFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQI---SGHL-------TSQLGQFKSLRTLSLDDNC 338 (794)
Q Consensus 269 ~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l---~~~~-------~~~l~~l~~L~~L~L~~n~ 338 (794)
.+..+..++.+++++|.+......++...-. ...+|+..++++-.. ...+ ...+..||+|+..+|++|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455778888899998888776666654321 123566666554321 1111 2234567788888888887
Q ss_pred CcCCCCCCc----CCCCCCCEEEccCCccccc----CCcc---------ccCCCCCCeEeccCcccccccCh----hhhc
Q 046398 339 ISGPLPPAL----GDLSSLTRLDLSRNMLNGS----IPLS---------LGKISHLEYLDLSNNKMNGTLSE----IHFV 397 (794)
Q Consensus 339 l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~----~p~~---------l~~l~~L~~L~Ls~N~l~~~~~~----~~~~ 397 (794)
+....|..+ +.-+.|++|.+++|.+.-. +..+ ..+-|.|++.....|++.. .+. ..+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHH
Confidence 766655433 4456777777777766411 1111 1123455555555555541 111 0111
Q ss_pred CCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC-----CCcccCCCCCCCEEeccCCCCCCCcchhHHhcc
Q 046398 398 NLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ-----FPSWLHSQKNLSVLDISNARISDTIPRWFWNSI 472 (794)
Q Consensus 398 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 472 (794)
.-. .|+++.+..|.+... ..-.+..+.+|+.||+..|-++-.-...
T Consensus 183 sh~------------------------~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~----- 233 (388)
T COG5238 183 SHE------------------------NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY----- 233 (388)
T ss_pred hhc------------------------CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH-----
Confidence 112 444555555444322 1112345677888888888776432221
Q ss_pred ccceeccCcccCCCCCCCEEEccCCcccccCChhhhh-----cCCCCcEEEcccccccccCCccc-------cCCCCCCE
Q 046398 473 FQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE-----GFTSLLILILRSNKFDGFLPIQL-------CRLTSLQI 540 (794)
Q Consensus 473 ~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-----~l~~L~~L~L~~n~l~~~~p~~~-------~~l~~L~~ 540 (794)
+...++..+.|+.|.+.+|-++..-...... ..|+|..|...+|...+.+-..+ .++|-|..
T Consensus 234 ------La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~ 307 (388)
T COG5238 234 ------LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVD 307 (388)
T ss_pred ------HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHH
Confidence 2334455566788888888776444333321 24677777777777655332211 24566667
Q ss_pred EEccCCcCc
Q 046398 541 LDVANNSLS 549 (794)
Q Consensus 541 L~Ls~N~l~ 549 (794)
|.+.+|++.
T Consensus 308 le~ngNr~~ 316 (388)
T COG5238 308 LERNGNRIK 316 (388)
T ss_pred HHHccCcch
Confidence 777777765
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=1.5e-05 Score=83.95 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=41.8
Q ss_pred cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccc-
Q 046398 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN- 522 (794)
Q Consensus 444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n- 522 (794)
+..+.+++.|++++|.++. +|. -.++|+.|.+++|.-...+|..+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s----------------LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES----------------LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc----------------cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcc
Confidence 4456777777777776654 341 12357777776643323555433 246777777776
Q ss_pred cccccCCccccCCCCCCEEEccCCcC
Q 046398 523 KFDGFLPIQLCRLTSLQILDVANNSL 548 (794)
Q Consensus 523 ~l~~~~p~~~~~l~~L~~L~Ls~N~l 548 (794)
.+. .+| ++|+.|+++++..
T Consensus 106 ~L~-sLP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 106 EIS-GLP------ESVRSLEIKGSAT 124 (426)
T ss_pred ccc-ccc------cccceEEeCCCCC
Confidence 333 333 2456666655443
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=8.6e-07 Score=86.40 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=44.4
Q ss_pred CccEEEeecccccc--cccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc-cCCccccCCCCCCeE
Q 046398 304 ALESLVFSSSQISG--HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG-SIPLSLGKISHLEYL 380 (794)
Q Consensus 304 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L 380 (794)
.++++||.+|.|+. .+...+.++|.|+.|+++.|.+...+-..-....+|++|.|.+..+.- .....+..+|.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 67777777777764 233445566777777777776654332111234566666666555431 122233444555555
Q ss_pred eccCcc
Q 046398 381 DLSNNK 386 (794)
Q Consensus 381 ~Ls~N~ 386 (794)
.++.|.
T Consensus 152 HmS~N~ 157 (418)
T KOG2982|consen 152 HMSDNS 157 (418)
T ss_pred hhccch
Confidence 555553
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=7.4e-06 Score=57.30 Aligned_cols=36 Identities=39% Similarity=0.683 Sum_probs=17.0
Q ss_pred CCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398 631 GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS 667 (794)
Q Consensus 631 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 667 (794)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 34444555555555555555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.3e-05 Score=54.86 Aligned_cols=37 Identities=43% Similarity=0.606 Sum_probs=27.6
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCC
Q 046398 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFA 155 (794)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~ 155 (794)
++|++|++++|+++ .+|+.+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 46788888888888 46777788888888888888777
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3e-05 Score=88.97 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=27.6
Q ss_pred hhhccCCCCEEEccCCCCCcchHHHHHhhh--hcCcCCccEEEeecccccccccccc-cCCCCCCEEE
Q 046398 269 SFVRLCELTSIDVSDVKLSQDLSQVLDILS--ACGASALESLVFSSSQISGHLTSQL-GQFKSLRTLS 333 (794)
Q Consensus 269 ~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~--~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ 333 (794)
.+.++++|+.||+|........ ..+...- ...+|+|+.||.+++.+....-+.+ ...++|+.+.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred HHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 3445555555555554433322 1111110 1124466666666666554433322 2234444443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00025 Score=74.93 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=30.3
Q ss_pred CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 046398 485 NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANN 546 (794)
Q Consensus 485 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 546 (794)
.+.+++.|++++|.++ .+|. -.++|+.|.+++|.-...+|+.+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4456666666666665 5552 13356666666644333445433 246666666666
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=3.4e-05 Score=88.45 Aligned_cols=130 Identities=29% Similarity=0.349 Sum_probs=85.4
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC
Q 046398 114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP 193 (794)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp 193 (794)
..||+|+.|.+++-.+...++-....++++|+.||+|+++++.. .++++|++||+|.+.+=.+. ....-
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e---------~~~~l 213 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE---------SYQDL 213 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC---------chhhH
Confidence 46889999999887776544445567889999999999988754 67889999999988533321 11122
Q ss_pred CccCCCCCCCEEECcCCCCCCCC--C----ccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEE
Q 046398 194 NRLGNLTSLRHLDLSANKFNSTT--A----GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTI 254 (794)
Q Consensus 194 ~~l~~l~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L 254 (794)
..+.+|++|++||+|........ . +.-..+|+|+.||.+++.+...+-..-+..-++|+.+
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 35678899999999887554332 1 1123477888888887776654433233333444433
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.24 E-value=1.8e-05 Score=81.23 Aligned_cols=109 Identities=21% Similarity=0.192 Sum_probs=55.1
Q ss_pred CCCCEEeCCCCCCCCC-CCCcccCCCCCCCEEEcCCCC-CCCCCcccc-cCCccccccccCccccccccccccccccCCC
Q 046398 117 KHLTHLDLSGNDFQGI-RIPKYLGSLKNLRYLNLSGAE-FAGIIPHQL-GNLSNLRCLDLSWSEYALQVHSFSWLSGQIP 193 (794)
Q Consensus 117 ~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp 193 (794)
..|+.|.+.++.-.+. .+-....+++++++|++.++. +++..-..+ ..+++|++|++..|..- +...-
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i---------T~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI---------TDVSL 208 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh---------HHHHH
Confidence 4677777877753322 233344567788888887774 332222222 34677777777654321 11111
Q ss_pred C-ccCCCCCCCEEECcCC-CCCCCCC-ccccCCCCCCeEeeecc
Q 046398 194 N-RLGNLTSLRHLDLSAN-KFNSTTA-GWLSKFNHLEFLSLSSN 234 (794)
Q Consensus 194 ~-~l~~l~~L~~L~Ls~n-~l~~~~~-~~l~~l~~L~~L~L~~n 234 (794)
+ -...+++|++|+++.+ ++++... ....++..++.+.+.+|
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 1 1234667777777766 3333211 12334444555544443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.0005 Score=64.03 Aligned_cols=84 Identities=23% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407 (794)
Q Consensus 328 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l 407 (794)
+...+||++|.+... ..|..++.|.+|.+.+|+|+..-|.--.-+++|+.|.+.+|++...-.-..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455677777766522 335566777777777777775555433445667777777777763333334566667777776
Q ss_pred cCCcce
Q 046398 408 SGNSLI 413 (794)
Q Consensus 408 s~n~l~ 413 (794)
-+|+.+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 666654
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.12 E-value=0.00067 Score=63.16 Aligned_cols=60 Identities=27% Similarity=0.332 Sum_probs=38.5
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccc
Q 046398 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179 (794)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~ 179 (794)
.....+||++|.+... ..|..++.|..|.|++|+|+.+-|.--..+++|+.|.|.+|.+.
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 3456677777777632 34566777777888877777655554445566666666655543
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=1.9e-05 Score=81.06 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=86.9
Q ss_pred ccCCCCCCEEeCCCCC-CCCCCCCcccCCCCCCCEEEcCCC-CCCCCCcc-cccCCccccccccCccccccccccccccc
Q 046398 113 LVDLKHLTHLDLSGND-FQGIRIPKYLGSLKNLRYLNLSGA-EFAGIIPH-QLGNLSNLRCLDLSWSEYALQVHSFSWLS 189 (794)
Q Consensus 113 l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~ 189 (794)
-.+++++++|++.++. +++...-..-..+++|++|+|..| .++...-. -...+++|++|++|+|.-. +
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi---------~ 230 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI---------S 230 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh---------h
Confidence 3678899999998885 443322222356889999999985 45543333 2346899999999988632 2
Q ss_pred c-CCCCccCCCCCCCEEECcCCCCCCCCCccc----cCCCCCCeEeeeccC-CCCCCCccccCCCCCCcEEEccCCCCCC
Q 046398 190 G-QIPNRLGNLTSLRHLDLSANKFNSTTAGWL----SKFNHLEFLSLSSNG-LQGTISSIGLENLTSIKTIDLSLNFELG 263 (794)
Q Consensus 190 ~-~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~-l~~~i~~~~l~~l~~L~~L~L~~~~~~~ 263 (794)
+ .+-.-..++..++.+-+.+|. +...+.+ +.+..+.++++..+. +++.--...-..+..|+.++.+....++
T Consensus 231 ~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 231 GNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred cCcchHHhccchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 2 122233445556666555542 1111112 233445556655553 2211100011235566677666444433
Q ss_pred CCCchhhh-ccCCCCEEEccCCC
Q 046398 264 GPIPTSFV-RLCELTSIDVSDVK 285 (794)
Q Consensus 264 ~~~~~~l~-~l~~L~~L~l~~~~ 285 (794)
......++ +..+|+.+.++.++
T Consensus 309 d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 309 DEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hHHHHHHhcCCCceEEEeccccc
Confidence 33333332 44556666665554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00032 Score=68.21 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=35.7
Q ss_pred ecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCC--CCCCCCcccccCCccccccccCccccc
Q 046398 109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGA--EFAGIIPHQLGNLSNLRCLDLSWSEYA 179 (794)
Q Consensus 109 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~~~~~ 179 (794)
+....-.+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++++.++--...+++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333334455555555555555432 23344666667777666 444444444444566666666655543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.83 E-value=0.0045 Score=55.52 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=34.2
Q ss_pred cccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCC
Q 046398 322 QLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401 (794)
Q Consensus 322 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 401 (794)
.|..+++|+.+.+.. .+.......|.++++|+.+.+..+ +.......+..+++++.+.+.+ .+. .++...|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344555555555553 333333444555555666655553 3323333445555555555543 222 334444555555
Q ss_pred CCEEECcC
Q 046398 402 LTWFSASG 409 (794)
Q Consensus 402 L~~L~ls~ 409 (794)
|+.+.+..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 55555544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0016 Score=63.55 Aligned_cols=94 Identities=21% Similarity=0.263 Sum_probs=56.8
Q ss_pred CCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCC
Q 046398 134 IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFN 213 (794)
Q Consensus 134 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 213 (794)
+......+..|+.|++.+..++.. ..+-.|++|+.|++|.|+.. .++.++....++++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~--------~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRR--------VSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccc--------ccccceehhhhCCceeEEeecCCccc
Confidence 444455566777777777766532 23556778888888877444 44455555556678888888888765
Q ss_pred CC-CCccccCCCCCCeEeeeccCCC
Q 046398 214 ST-TAGWLSKFNHLEFLSLSSNGLQ 237 (794)
Q Consensus 214 ~~-~~~~l~~l~~L~~L~L~~n~l~ 237 (794)
.. ....+..+.+|..|++.+|..+
T Consensus 105 ~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 105 DLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cccccchhhhhcchhhhhcccCCcc
Confidence 31 1112444555666666655543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.48 E-value=0.0082 Score=53.83 Aligned_cols=60 Identities=23% Similarity=0.217 Sum_probs=23.4
Q ss_pred ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEcc
Q 046398 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVA 544 (794)
Q Consensus 482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 544 (794)
.|.++++|+.+.+.. .+. .++...+.++++|+.+.+.++ +.......|..+++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 455555666666553 333 444444444445555555443 333333344444445555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00024 Score=69.13 Aligned_cols=89 Identities=26% Similarity=0.254 Sum_probs=62.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN 194 (794)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~ 194 (794)
.+.+.+.|+..++.++++. ...+++.|++|.||-|+|+..-| +..|++|++|.|..|.+.... --.
T Consensus 17 dl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sld---------EL~ 82 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLD---------ELE 82 (388)
T ss_pred HHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHH---------HHH
Confidence 4667888999999998653 34568899999999999985533 788899999999877654100 012
Q ss_pred ccCCCCCCCEEECcCCCCCCCCC
Q 046398 195 RLGNLTSLRHLDLSANKFNSTTA 217 (794)
Q Consensus 195 ~l~~l~~L~~L~Ls~n~l~~~~~ 217 (794)
.+.++++|+.|.|..|.-.+..+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHhcCchhhhHhhccCCcccccc
Confidence 34566777777777766555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00046 Score=67.22 Aligned_cols=80 Identities=28% Similarity=0.278 Sum_probs=39.8
Q ss_pred CCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCch-----hhhc
Q 046398 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT-----SFVR 272 (794)
Q Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~-----~l~~ 272 (794)
+++.|++|.||-|+|+...| +..+++|++|+|..|.|...-....+.++++|+.|.|. .|.-.|.-+. .+.-
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~-ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD-ENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc-cCCcccccchhHHHHHHHH
Confidence 34455555555555554444 55556666666666655432222234555666666665 3333333222 2445
Q ss_pred cCCCCEEE
Q 046398 273 LCELTSID 280 (794)
Q Consensus 273 l~~L~~L~ 280 (794)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 56666554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.70 E-value=0.0011 Score=74.88 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=7.2
Q ss_pred cCCCCCCEEEccCCc
Q 046398 324 GQFKSLRTLSLDDNC 338 (794)
Q Consensus 324 ~~l~~L~~L~L~~n~ 338 (794)
..+++++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 344455555554444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0046 Score=35.86 Aligned_cols=11 Identities=45% Similarity=0.495 Sum_probs=4.6
Q ss_pred CEEeccccccc
Q 046398 633 QSLNLSHNIFT 643 (794)
Q Consensus 633 ~~L~Ls~N~l~ 643 (794)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.0065 Score=35.24 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=13.1
Q ss_pred CCCEEeCCCCcCcccCcccccC
Q 046398 655 SIESLDFSTNQLSSKISQSMSS 676 (794)
Q Consensus 655 ~L~~L~Ls~N~l~~~~p~~l~~ 676 (794)
+|+.|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777776 56655543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.11 E-value=0.0096 Score=67.16 Aligned_cols=15 Identities=27% Similarity=0.147 Sum_probs=8.3
Q ss_pred cCCCCCCeEeccCcc
Q 046398 372 GKISHLEYLDLSNNK 386 (794)
Q Consensus 372 ~~l~~L~~L~Ls~N~ 386 (794)
..+++++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 445555555555555
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.38 E-value=0.0031 Score=60.03 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=74.7
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccccc
Q 046398 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG 190 (794)
Q Consensus 111 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~ 190 (794)
..+..+...++||++.|++. .+-..|..++.|..||++.|.+. ..|..++.+..++++++..|...
T Consensus 36 ~ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~----------- 101 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS----------- 101 (326)
T ss_pred hhhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-----------
Confidence 45678889999999999887 45677788889999999999887 78999999999999999877654
Q ss_pred CCCCccCCCCCCCEEECcCCCCCC
Q 046398 191 QIPNRLGNLTSLRHLDLSANKFNS 214 (794)
Q Consensus 191 ~lp~~l~~l~~L~~L~Ls~n~l~~ 214 (794)
..|.+++..+.++++++..|.+.-
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred hCCccccccCCcchhhhccCcchH
Confidence 678888888999988888887543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.32 E-value=0.00076 Score=74.20 Aligned_cols=60 Identities=28% Similarity=0.342 Sum_probs=30.0
Q ss_pred eEEEcCCCccccc----cChhhhcc-cCCCEEecccccccccCC----ccccccCCCCEEeCCCCcCcc
Q 046398 609 RIIDVSKNNFSGE----IPMELTYL-RGLQSLNLSHNIFTGQIP----ENIGNLISIESLDFSTNQLSS 668 (794)
Q Consensus 609 ~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~ 668 (794)
..+++++|++.+. ..+.+..+ ..++.++++.|.|+..-. +.+.....++.|.++.|.+..
T Consensus 236 ~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 236 RELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3466666666532 12223333 445666666666654322 223344556666666666554
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.75 E-value=0.1 Score=28.03 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=3.5
Q ss_pred CCEEecccccc
Q 046398 632 LQSLNLSHNIF 642 (794)
Q Consensus 632 L~~L~Ls~N~l 642 (794)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.46 E-value=0.011 Score=56.27 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=70.7
Q ss_pred cceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeC
Q 046398 606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV 685 (794)
Q Consensus 606 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 685 (794)
...+.||++.|++- ..-..++-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 44588999999886 45566777888999999999998 78899999999999999888887 57888999999999999
Q ss_pred cCCccc
Q 046398 686 SNNLLT 691 (794)
Q Consensus 686 s~N~l~ 691 (794)
.+|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999875
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.28 E-value=0.0018 Score=71.21 Aligned_cols=90 Identities=26% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCCEEeCCCCCCCCCC---CCcccCCCCCCCEEEcCCCCCCCCCcc----cccCC-ccccccccCcccccccccccccc
Q 046398 117 KHLTHLDLSGNDFQGIR---IPKYLGSLKNLRYLNLSGAEFAGIIPH----QLGNL-SNLRCLDLSWSEYALQVHSFSWL 188 (794)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~L~Ls~n~l~~~~p~----~l~~l-~~L~~L~Ls~~~~~~~~~~~~~~ 188 (794)
..+.+|.|.+|.+.... +-..+.....|..|++++|.+.+.--. .+... ..|++|++..|..... .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~------g 160 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE------G 160 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc------c
Confidence 44777788888776431 123345566777777777777633211 12222 3455565555443311 1
Q ss_pred ccCCCCccCCCCCCCEEECcCCCC
Q 046398 189 SGQIPNRLGNLTSLRHLDLSANKF 212 (794)
Q Consensus 189 ~~~lp~~l~~l~~L~~L~Ls~n~l 212 (794)
...+.+.+.....++.++++.|.+
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhccc
Confidence 112334444455555555555544
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.30 E-value=0.17 Score=27.11 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=4.1
Q ss_pred CCCEEEccCCcc
Q 046398 488 NLEVLNLGDNEF 499 (794)
Q Consensus 488 ~L~~L~Ls~n~l 499 (794)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.01 E-value=0.39 Score=28.97 Aligned_cols=15 Identities=53% Similarity=0.667 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCcCcc
Q 046398 654 ISIESLDFSTNQLSS 668 (794)
Q Consensus 654 ~~L~~L~Ls~N~l~~ 668 (794)
++|+.|+|++|+|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.01 E-value=0.39 Score=28.97 Aligned_cols=15 Identities=53% Similarity=0.667 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCcCcc
Q 046398 654 ISIESLDFSTNQLSS 668 (794)
Q Consensus 654 ~~L~~L~Ls~N~l~~ 668 (794)
++|+.|+|++|+|..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.12 E-value=0.57 Score=28.24 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=13.5
Q ss_pred CCCCEEEccCCcccccCChhhh
Q 046398 487 SNLEVLNLGDNEFVGKIPTWMG 508 (794)
Q Consensus 487 ~~L~~L~Ls~n~l~~~ip~~~~ 508 (794)
++|+.|+|++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45677777777776 5666544
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.12 E-value=0.57 Score=28.24 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=13.5
Q ss_pred CCCCEEEccCCcccccCChhhh
Q 046398 487 SNLEVLNLGDNEFVGKIPTWMG 508 (794)
Q Consensus 487 ~~L~~L~Ls~n~l~~~ip~~~~ 508 (794)
++|+.|+|++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45677777777776 5666544
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=0.16 Score=47.90 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=55.9
Q ss_pred CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccC-CCCCCcEEEccCCCCCCCCCchhhhccCCCCE
Q 046398 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE-NLTSIKTIDLSLNFELGGPIPTSFVRLCELTS 278 (794)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~ 278 (794)
..++.+|-++..|....-+.+.+++.++.|.+.++.--+...-..++ -.++|+.|+++++..++..--..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34556666666666666666777777777777766522111100111 34678888888887887777777888888888
Q ss_pred EEccCCCC
Q 046398 279 IDVSDVKL 286 (794)
Q Consensus 279 L~l~~~~l 286 (794)
|.+.+-..
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 87766443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.05 E-value=0.21 Score=29.55 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=4.5
Q ss_pred CCCEEeCCCCcCc
Q 046398 655 SIESLDFSTNQLS 667 (794)
Q Consensus 655 ~L~~L~Ls~N~l~ 667 (794)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.91 E-value=0.22 Score=29.42 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=7.5
Q ss_pred cCCCEEeccccccccc
Q 046398 630 RGLQSLNLSHNIFTGQ 645 (794)
Q Consensus 630 ~~L~~L~Ls~N~l~~~ 645 (794)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555543
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.79 E-value=0.27 Score=46.44 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=47.9
Q ss_pred CCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCC-CCCCCCCcccc
Q 046398 143 NLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN-KFNSTTAGWLS 221 (794)
Q Consensus 143 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~ 221 (794)
.++.+|-+++.|..+--+.+.+++.++.|.+.+|... +++. + +.+-. -.++|+.|++++| +|+...-..+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~---dD~~-L-~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF---DDWC-L-ERLGG---LAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch---hhHH-H-HHhcc---cccchheeeccCCCeechhHHHHHH
Confidence 4666777777666555555666666666666555432 0000 0 00100 2467888888876 56666666677
Q ss_pred CCCCCCeEeeec
Q 046398 222 KFNHLEFLSLSS 233 (794)
Q Consensus 222 ~l~~L~~L~L~~ 233 (794)
.+++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 777777776653
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.68 E-value=2.5 Score=25.50 Aligned_cols=17 Identities=47% Similarity=0.778 Sum_probs=9.1
Q ss_pred CCCEEecccccccccCCc
Q 046398 631 GLQSLNLSHNIFTGQIPE 648 (794)
Q Consensus 631 ~L~~L~Ls~N~l~~~ip~ 648 (794)
+|+.|++++|+++ ..|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555555666555 4443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.78 E-value=3.5 Score=24.96 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=10.1
Q ss_pred cCCCCEEeCCCCcCc
Q 046398 653 LISIESLDFSTNQLS 667 (794)
Q Consensus 653 l~~L~~L~Ls~N~l~ 667 (794)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.11 E-value=31 Score=37.38 Aligned_cols=18 Identities=50% Similarity=0.464 Sum_probs=9.8
Q ss_pred CCCEEEccCCcccccCCc
Q 046398 352 SLTRLDLSRNMLNGSIPL 369 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p~ 369 (794)
.+.+++++.|.....+|.
T Consensus 215 ~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cccccccccCCCCccchh
Confidence 355566666655555543
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.34 E-value=7.1 Score=24.04 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=9.3
Q ss_pred CCCCEEeCCCCcCcc
Q 046398 654 ISIESLDFSTNQLSS 668 (794)
Q Consensus 654 ~~L~~L~Ls~N~l~~ 668 (794)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456666666666653
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.05 E-value=10 Score=41.75 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=40.8
Q ss_pred cccceeEEEcCCCcccccc--ChhhhcccCCCEEecccc--cccccCCcccccc--CCCCEEeCCCCcCcc
Q 046398 604 ILNLVRIIDVSKNNFSGEI--PMELTYLRGLQSLNLSHN--IFTGQIPENIGNL--ISIESLDFSTNQLSS 668 (794)
Q Consensus 604 ~l~~L~~LdLs~N~l~~~i--p~~l~~l~~L~~L~Ls~N--~l~~~ip~~l~~l--~~L~~L~Ls~N~l~~ 668 (794)
..+.+..+.|++|++...- ..--..-+.|+.|+||+| .+.. ..++..+ ..|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3566788899999886321 111223478999999999 4432 2233333 457899999999875
No 93
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.77 E-value=18 Score=32.68 Aligned_cols=16 Identities=13% Similarity=0.083 Sum_probs=7.8
Q ss_pred eeeeehhhhHHHHHHh
Q 046398 747 LYVSIAVGFVVGFWCF 762 (794)
Q Consensus 747 ~~~~~~~~~~~~~~~~ 762 (794)
+.+++++|+.+.++++
T Consensus 50 IVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG 65 (154)
T ss_pred EEEEEEecccHHHHHH
Confidence 4555555554444433
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.13 E-value=2.2e+02 Score=31.29 Aligned_cols=60 Identities=27% Similarity=0.313 Sum_probs=34.5
Q ss_pred CccEEEeecccccccccc---cccCCCCCCEEEccCCcCcCC----CCCCcCCCCCCCEEEccCCcc
Q 046398 304 ALESLVFSSSQISGHLTS---QLGQFKSLRTLSLDDNCISGP----LPPALGDLSSLTRLDLSRNML 363 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 363 (794)
-+..+.++.+......-. .+..-+.+..|++++|..... +|..+..-..++....+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 456667777665533222 233446788999999877532 344444444555555555544
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.35 E-value=25 Score=46.77 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred ecccccccccCCccccccCCCCEEeCCCCcCccc
Q 046398 636 NLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK 669 (794)
Q Consensus 636 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 669 (794)
||++|+|+..-+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6889999966566788899999999999988764
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.60 E-value=30 Score=38.33 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=36.5
Q ss_pred CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCC--cccccCChhhhhcCCCCcEEEcccc
Q 046398 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN--EFVGKIPTWMGEGFTSLLILILRSN 522 (794)
Q Consensus 445 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~ip~~~~~~l~~L~~L~L~~n 522 (794)
.+.+.+..+.+++|++... .+ +...-...|+|+.|+|++| .+......+-. +...|++|.+.+|
T Consensus 215 ~n~p~i~sl~lsnNrL~~L------------d~-~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GN 280 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHL------------DA-LSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGN 280 (585)
T ss_pred cCCcceeeeecccchhhch------------hh-hhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCC
Confidence 4667777777888877642 11 1111123467777777777 33211111111 3455777777777
Q ss_pred cccc
Q 046398 523 KFDG 526 (794)
Q Consensus 523 ~l~~ 526 (794)
++..
T Consensus 281 Plc~ 284 (585)
T KOG3763|consen 281 PLCT 284 (585)
T ss_pred cccc
Confidence 7654
No 97
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.00 E-value=22 Score=24.03 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=5.0
Q ss_pred eeeehhhhHHHH
Q 046398 748 YVSIAVGFVVGF 759 (794)
Q Consensus 748 ~~~~~~~~~~~~ 759 (794)
.+++++++-+++
T Consensus 12 aIa~~VvVPV~v 23 (40)
T PF08693_consen 12 AIAVGVVVPVGV 23 (40)
T ss_pred EEEEEEEechHH
Confidence 344444443333
No 98
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.90 E-value=40 Score=20.12 Aligned_cols=12 Identities=58% Similarity=0.794 Sum_probs=7.5
Q ss_pred CCCCEEEcCCCC
Q 046398 142 KNLRYLNLSGAE 153 (794)
Q Consensus 142 ~~L~~L~Ls~n~ 153 (794)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 466666666663
No 99
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.59 E-value=59 Score=27.09 Aligned_cols=22 Identities=32% Similarity=0.313 Sum_probs=10.2
Q ss_pred CcchhHHHHHHHHHHHHHHHhh
Q 046398 1 MKSTMSVSVALVFLELFAISSF 22 (794)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (794)
|-|-..+++.|++.+++++++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 5544444444444444444433
No 100
>PF15102 TMEM154: TMEM154 protein family
Probab=24.19 E-value=68 Score=28.88 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=9.0
Q ss_pred HHHhhhhheeecccccc
Q 046398 759 FWCFIGPLLLNRGWRYK 775 (794)
Q Consensus 759 ~~~~~~~~~~~~~~~~~ 775 (794)
+++++++++++||||.+
T Consensus 72 Ll~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHheeEEeecccC
Confidence 33344444556677764
No 101
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=20.82 E-value=66 Score=22.64 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHhhcCC
Q 046398 3 STMSVSVALVFLELFAISSFCSG 25 (794)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (794)
++|..+++|+|++.++..++|..
T Consensus 1 ftlKKsllLlfflG~ISlSlCee 23 (46)
T PF03032_consen 1 FTLKKSLLLLFFLGTISLSLCEE 23 (46)
T ss_pred CcchHHHHHHHHHHHcccchHHH
Confidence 46788888888888877777653
No 102
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=20.29 E-value=32 Score=23.87 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHhcCC
Q 046398 31 CTDSEREALLKLKQDLK 47 (794)
Q Consensus 31 ~~~~~~~~ll~~k~~~~ 47 (794)
...+||+||++-+..+-
T Consensus 28 afrqdrdallear~kl~ 44 (54)
T PF13260_consen 28 AFRQDRDALLEARNKLF 44 (54)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 45689999999887763
Done!