Query 046398
Match_columns 794
No_of_seqs 1020 out of 5592
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 20:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.8E-84 9.4E-89 768.9 50.3 668 30-725 8-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-63 7E-68 589.9 36.6 576 93-693 100-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-56 1.4E-60 522.9 47.5 567 75-711 25-619 (680)
4 3t6q_A CD180 antigen; protein- 100.0 1.9E-54 6.6E-59 501.8 40.4 508 103-696 43-565 (606)
5 4eco_A Uncharacterized protein 100.0 4E-55 1.4E-59 506.9 28.9 507 31-692 27-601 (636)
6 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-54 2.5E-58 513.3 40.1 551 63-723 14-590 (844)
7 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-53 1.1E-57 498.2 44.7 557 75-696 49-627 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-53 9.9E-58 491.9 36.6 503 103-696 42-563 (606)
9 3t6q_A CD180 antigen; protein- 100.0 1.2E-51 4.1E-56 478.3 42.7 519 108-713 26-559 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 7.1E-53 2.4E-57 495.0 29.7 495 29-693 264-842 (876)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-51 3.8E-56 478.7 35.6 521 103-716 21-561 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-50 1.1E-54 481.9 36.5 527 99-717 10-564 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 9.4E-48 3.2E-52 442.6 37.1 501 109-699 22-539 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2E-48 6.7E-53 445.9 30.9 481 108-697 19-516 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 2.9E-47 1E-51 438.4 32.8 490 93-672 28-536 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-46 2.1E-50 422.0 27.2 456 120-696 3-486 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-45 1.4E-49 418.4 28.6 485 117-713 5-509 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 3.1E-44 1.1E-48 421.7 34.0 369 224-713 423-839 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 9.8E-44 3.4E-48 414.7 36.5 515 118-695 53-584 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-45 1.4E-49 415.2 22.7 451 103-671 10-485 (520)
21 4eco_A Uncharacterized protein 100.0 1.6E-44 5.5E-49 418.1 20.7 458 166-712 81-598 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-42 1E-46 394.9 26.3 461 116-697 30-516 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 7.9E-40 2.7E-44 381.7 39.0 527 122-712 36-578 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-41 7E-46 388.0 24.3 448 104-671 42-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.7E-40 5.8E-45 367.5 25.6 407 111-696 5-416 (454)
26 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-40 3.9E-45 351.4 17.1 293 30-386 2-302 (313)
27 3v47_A TOLL-like receptor 5B a 100.0 1.1E-38 3.7E-43 356.1 30.7 381 200-700 30-417 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 3.1E-39 1.1E-43 357.3 21.9 404 135-715 5-410 (454)
29 3v47_A TOLL-like receptor 5B a 100.0 3.9E-37 1.3E-41 343.5 32.1 358 103-504 40-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-36 4.1E-41 337.0 27.1 359 105-557 30-395 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-36 6.2E-41 335.5 28.2 320 134-550 34-353 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 2.4E-35 8.1E-40 330.9 26.0 305 328-695 33-337 (477)
33 1o6v_A Internalin A; bacterial 100.0 1.7E-34 5.7E-39 322.5 31.6 347 114-550 43-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 5.6E-34 1.9E-38 318.2 30.9 347 222-693 44-390 (466)
35 3o6n_A APL1; leucine-rich repe 100.0 7.5E-34 2.6E-38 309.9 25.9 333 273-716 44-377 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 9.9E-34 3.4E-38 317.7 26.2 328 304-695 33-360 (477)
37 3oja_B Anopheles plasmodium-re 100.0 1E-33 3.4E-38 325.9 25.6 334 273-717 50-384 (597)
38 1ogq_A PGIP-2, polygalacturona 100.0 8.3E-34 2.8E-38 298.9 18.7 258 375-721 50-312 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 3.8E-33 1.3E-37 304.3 23.0 311 114-526 42-353 (390)
40 3oja_B Anopheles plasmodium-re 100.0 2.4E-32 8.2E-37 314.4 23.9 242 115-388 49-291 (597)
41 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.9E-36 287.1 28.2 302 304-691 45-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 1.5E-30 5.1E-35 279.1 28.8 280 304-667 67-346 (347)
43 4fcg_A Uncharacterized protein 100.0 4E-32 1.4E-36 287.7 12.1 271 29-364 22-314 (328)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-30 8.2E-35 275.5 25.5 290 328-689 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 7.3E-30 2.5E-34 271.5 27.1 291 304-689 32-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-32 5.5E-37 306.7 -0.6 371 224-669 3-413 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-29 7.1E-34 268.2 21.8 290 275-665 34-331 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-32 9.2E-37 304.9 -0.8 367 249-693 3-413 (461)
49 1xku_A Decorin; proteoglycan, 100.0 6.4E-29 2.2E-33 264.2 24.7 290 274-665 31-330 (330)
50 3ogk_B Coronatine-insensitive 100.0 2.8E-31 9.7E-36 306.5 -1.5 435 109-688 65-548 (592)
51 3ogk_B Coronatine-insensitive 100.0 8.2E-31 2.8E-35 302.7 2.1 380 198-693 110-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 5.9E-28 2E-32 259.3 16.6 261 109-390 46-316 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 8.7E-28 3E-32 258.0 17.4 279 326-696 30-319 (353)
54 2z66_A Variable lymphocyte rec 99.9 3E-27 1E-31 248.6 20.4 254 330-695 10-265 (306)
55 2z66_A Variable lymphocyte rec 99.9 6E-27 2E-31 246.2 18.9 278 305-696 9-292 (306)
56 4fcg_A Uncharacterized protein 99.9 6.8E-27 2.3E-31 247.5 19.0 227 374-691 80-314 (328)
57 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-27 4.3E-32 252.4 9.5 267 305-696 12-281 (317)
58 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-25 6E-30 254.5 25.7 263 303-696 40-302 (622)
59 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-25 1.3E-29 251.6 27.8 258 327-715 40-298 (622)
60 3zyi_A Leucine-rich repeat-con 99.9 1.3E-25 4.5E-30 249.4 22.8 249 118-388 55-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 3.8E-25 1.3E-29 244.8 24.2 250 352-693 44-294 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-25 5.2E-30 232.9 19.7 170 480-697 98-267 (285)
63 3zyi_A Leucine-rich repeat-con 99.9 5.2E-25 1.8E-29 244.6 25.1 87 607-693 219-305 (452)
64 1wwl_A Monocyte differentiatio 99.9 2.9E-27 1E-31 249.0 5.1 209 423-693 94-311 (312)
65 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-25 9.2E-30 231.0 19.9 148 481-676 123-270 (285)
66 3zyj_A Leucine-rich repeat-con 99.9 4.6E-25 1.6E-29 244.1 22.6 245 121-387 47-291 (440)
67 2p1m_B Transport inhibitor res 99.9 6.1E-28 2.1E-32 278.8 -4.2 162 485-692 370-545 (594)
68 1wwl_A Monocyte differentiatio 99.9 2.1E-27 7.2E-32 250.0 0.2 247 114-388 40-309 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-26 7.2E-31 243.0 3.7 271 352-722 11-284 (317)
70 3oja_A Leucine-rich immune mol 99.9 2.2E-25 7.6E-30 248.8 11.2 150 486-686 119-270 (487)
71 2p1m_B Transport inhibitor res 99.9 8.5E-27 2.9E-31 269.2 -3.8 89 603-692 429-520 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 4.1E-23 1.4E-27 213.4 19.7 211 425-698 29-244 (276)
73 3oja_A Leucine-rich immune mol 99.9 1.7E-24 5.9E-29 241.6 9.7 237 326-662 33-270 (487)
74 2o6q_A Variable lymphocyte rec 99.9 1.9E-22 6.5E-27 207.4 22.3 207 425-696 17-223 (270)
75 2o6q_A Variable lymphocyte rec 99.9 1.9E-22 6.4E-27 207.5 21.0 218 60-365 2-219 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 5E-22 1.7E-26 205.2 22.7 204 143-364 29-237 (276)
77 3rfs_A Internalin B, repeat mo 99.9 1.5E-22 5E-27 208.5 16.0 183 444-697 59-241 (272)
78 3m19_A Variable lymphocyte rec 99.9 3.5E-22 1.2E-26 203.0 16.2 211 449-724 15-232 (251)
79 1p9a_G Platelet glycoprotein I 99.9 2.1E-21 7.3E-26 201.3 19.5 180 448-693 31-210 (290)
80 3goz_A Leucine-rich repeat-con 99.9 2.9E-23 9.9E-28 223.3 5.2 173 448-672 109-302 (362)
81 3rfs_A Internalin B, repeat mo 99.9 2.5E-21 8.4E-26 199.3 18.9 188 444-697 37-224 (272)
82 1p9a_G Platelet glycoprotein I 99.9 3E-21 1E-25 200.2 18.9 179 425-669 32-210 (290)
83 2ca6_A RAN GTPase-activating p 99.9 3.1E-23 1E-27 225.4 3.3 252 366-695 23-320 (386)
84 2ast_B S-phase kinase-associat 99.8 3.9E-22 1.3E-26 212.5 7.1 251 352-697 48-312 (336)
85 2ast_B S-phase kinase-associat 99.8 4.2E-23 1.4E-27 220.1 -0.5 266 59-393 33-311 (336)
86 4glp_A Monocyte differentiatio 99.8 1.5E-21 5.2E-26 205.1 11.4 207 426-692 93-308 (310)
87 2ca6_A RAN GTPase-activating p 99.8 5.4E-23 1.8E-27 223.5 -0.3 252 342-671 23-320 (386)
88 3m19_A Variable lymphocyte rec 99.8 3E-20 1E-24 188.8 19.1 193 60-289 2-194 (251)
89 4glp_A Monocyte differentiatio 99.8 1.1E-20 3.7E-25 198.6 16.3 233 273-550 63-308 (310)
90 2xwt_C Thyrotropin receptor; s 99.8 1E-20 3.4E-25 190.8 14.7 199 448-710 31-235 (239)
91 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4.1E-25 190.3 14.9 197 425-689 32-237 (239)
92 1h6u_A Internalin H; cell adhe 99.8 2.8E-20 9.5E-25 194.9 17.7 191 425-693 42-232 (308)
93 3goz_A Leucine-rich repeat-con 99.8 1.3E-21 4.4E-26 210.4 6.5 256 122-389 3-298 (362)
94 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.7E-24 190.4 16.0 195 113-365 37-231 (308)
95 2v70_A SLIT-2, SLIT homolog 2 99.8 6.5E-20 2.2E-24 181.9 11.4 157 490-696 14-171 (220)
96 3cvr_A Invasion plasmid antige 99.8 2.4E-19 8.3E-24 201.4 17.0 78 609-695 163-247 (571)
97 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 175.8 13.9 175 451-697 10-184 (208)
98 3cvr_A Invasion plasmid antige 99.8 6.8E-19 2.3E-23 197.8 16.8 188 376-678 60-254 (571)
99 4ay9_X Follicle-stimulating ho 99.8 1.3E-18 4.4E-23 186.0 18.0 190 352-558 31-224 (350)
100 4ay9_X Follicle-stimulating ho 99.8 7.5E-19 2.6E-23 187.8 15.8 242 120-410 12-256 (350)
101 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.5E-23 172.4 15.1 155 490-694 14-168 (220)
102 3e6j_A Variable lymphocyte rec 99.8 2.3E-18 7.7E-23 172.0 15.7 157 489-696 21-177 (229)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 3.5E-18 1.2E-22 169.4 15.3 157 451-671 14-170 (220)
104 2o6s_A Variable lymphocyte rec 99.8 4.5E-18 1.5E-22 167.3 15.5 180 120-327 10-189 (208)
105 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.3E-23 184.6 13.5 177 451-693 21-204 (361)
106 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4E-22 173.3 15.7 173 445-693 43-215 (291)
107 2v9t_B SLIT homolog 2 protein 99.7 2.1E-17 7.2E-22 163.7 14.8 154 451-669 14-167 (220)
108 3e6j_A Variable lymphocyte rec 99.7 2.1E-17 7.1E-22 165.0 14.7 164 55-265 11-174 (229)
109 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 5E-22 172.6 13.1 170 425-670 47-216 (291)
110 4ezg_A Putative uncharacterize 99.7 2E-17 6.8E-22 161.0 13.3 154 484-692 41-195 (197)
111 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.9E-22 188.6 14.2 78 609-692 134-211 (605)
112 1w8a_A SLIT protein; signaling 99.7 1.9E-17 6.6E-22 160.3 10.7 88 609-696 57-144 (192)
113 4ezg_A Putative uncharacterize 99.7 5E-17 1.7E-21 158.2 12.6 155 445-668 41-195 (197)
114 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.4E-22 167.7 10.8 170 447-693 18-187 (263)
115 1m9s_A Internalin B; cell inva 99.7 7.6E-17 2.6E-21 183.3 15.3 191 352-645 22-212 (605)
116 2xot_A Amphoterin-induced prot 99.7 1.2E-16 4E-21 171.4 14.6 156 489-694 20-179 (361)
117 4b8c_D Glucose-repressible alc 99.7 2.7E-18 9.3E-23 200.3 2.0 261 31-364 129-404 (727)
118 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.3E-22 194.7 6.3 74 482-559 242-315 (727)
119 1w8a_A SLIT protein; signaling 99.7 1E-16 3.5E-21 155.1 11.0 132 490-671 11-143 (192)
120 1dce_A Protein (RAB geranylger 99.7 1.2E-18 4.1E-23 197.0 -3.8 87 608-697 465-552 (567)
121 1dce_A Protein (RAB geranylger 99.7 9.7E-19 3.3E-23 197.7 -5.0 122 488-661 442-567 (567)
122 1xeu_A Internalin C; cellular 99.6 1.9E-16 6.4E-21 161.5 9.4 169 425-670 20-188 (263)
123 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 144.5 10.5 83 609-691 74-160 (168)
124 3sb4_A Hypothetical leucine ri 99.6 3.6E-16 1.2E-20 165.5 7.8 223 199-430 100-327 (329)
125 2je0_A Acidic leucine-rich nuc 99.6 9.2E-16 3.1E-20 141.9 9.2 128 512-687 17-149 (149)
126 2wfh_A SLIT homolog 2 protein 99.6 5.7E-15 2E-19 142.7 13.9 86 609-694 57-142 (193)
127 2ell_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 141.2 11.7 135 485-668 22-161 (168)
128 2o6r_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 140.7 12.5 88 609-696 55-142 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 137.9 9.7 129 486-663 16-149 (149)
130 3sb4_A Hypothetical leucine ri 99.6 9.4E-15 3.2E-19 154.5 13.0 286 304-684 26-327 (329)
131 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.4E-19 139.6 12.6 129 490-669 13-141 (193)
132 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 137.1 13.1 133 489-671 9-141 (177)
133 1ds9_A Outer arm dynein; leuci 99.5 3.2E-16 1.1E-20 152.6 -3.3 154 485-692 16-186 (198)
134 1a9n_A U2A', U2A'; complex (nu 99.5 4.7E-14 1.6E-18 134.3 10.7 82 609-692 67-154 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.5 5.6E-14 1.9E-18 133.8 9.8 135 482-668 14-154 (176)
136 4fdw_A Leucine rich hypothetic 99.5 3.3E-12 1.1E-16 137.8 23.4 265 326-690 112-382 (401)
137 4fdw_A Leucine rich hypothetic 99.5 4.5E-12 1.5E-16 136.8 23.0 264 303-666 113-382 (401)
138 3g39_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 126.0 10.7 90 608-697 32-121 (170)
139 4fs7_A Uncharacterized protein 99.4 1.4E-11 4.9E-16 133.5 23.1 56 624-682 337-392 (394)
140 1ds9_A Outer arm dynein; leuci 99.4 5.8E-15 2E-19 143.6 -3.8 136 510-696 16-158 (198)
141 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 123.3 10.6 89 608-696 35-123 (174)
142 3g39_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 120.9 11.2 63 609-671 57-119 (170)
143 4fs7_A Uncharacterized protein 99.3 7.5E-11 2.6E-15 127.8 23.4 81 605-688 296-376 (394)
144 2r9u_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 119.0 11.3 61 609-669 60-120 (174)
145 3un9_A NLR family member X1; l 99.3 1.5E-13 5E-18 147.0 -1.0 192 447-691 71-283 (372)
146 3un9_A NLR family member X1; l 99.2 7.4E-13 2.5E-17 141.5 0.2 167 486-693 71-254 (372)
147 4gt6_A Cell surface protein; l 99.2 2.4E-09 8.1E-14 115.9 24.2 281 111-431 57-341 (394)
148 2ifg_A High affinity nerve gro 99.1 8.4E-11 2.9E-15 125.1 10.3 104 516-668 12-117 (347)
149 4gt6_A Cell surface protein; l 99.1 7.6E-09 2.6E-13 111.9 22.9 322 305-690 66-390 (394)
150 2ifg_A High affinity nerve gro 99.0 4.6E-10 1.6E-14 119.4 10.2 103 121-237 12-116 (347)
151 2ra8_A Uncharacterized protein 98.8 3.3E-09 1.1E-13 112.1 6.4 164 481-689 166-341 (362)
152 4h09_A Hypothetical leucine ri 98.8 1.2E-06 4.2E-11 94.0 25.6 63 623-686 279-341 (379)
153 2ra8_A Uncharacterized protein 98.7 8E-09 2.7E-13 109.2 5.2 87 272-362 250-341 (362)
154 4h09_A Hypothetical leucine ri 98.7 1.1E-06 3.7E-11 94.4 21.8 71 605-677 285-355 (379)
155 1io0_A Tropomodulin; LRR prote 98.4 9.6E-08 3.3E-12 91.0 4.2 83 609-691 68-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 1.7E-07 5.7E-12 93.8 4.7 84 611-696 148-238 (267)
157 3rw6_A Nuclear RNA export fact 98.3 4.5E-07 1.5E-11 90.7 6.5 79 604-684 168-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.3 2.5E-07 8.6E-12 88.0 3.4 61 607-667 94-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 3.7E-06 1.3E-10 77.8 2.6 83 607-689 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 2.5E-05 8.4E-10 72.2 3.9 85 200-285 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00043 1.5E-08 65.2 4.0 65 626-690 94-169 (197)
162 3rfe_A Platelet glycoprotein I 96.8 0.0017 5.8E-08 57.1 6.3 56 609-666 11-67 (130)
163 3rfe_A Platelet glycoprotein I 96.6 0.0025 8.6E-08 56.0 5.9 58 633-692 11-69 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0015 5.3E-08 61.4 3.9 85 604-688 39-136 (197)
165 2lz0_A Uncharacterized protein 36.1 88 0.003 25.1 6.5 47 314-361 7-53 (100)
166 2lz0_A Uncharacterized protein 28.4 84 0.0029 25.2 5.1 46 338-384 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-84 Score=768.86 Aligned_cols=668 Identities=29% Similarity=0.398 Sum_probs=493.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcceeeeEecCCCCcEEEEEcCCCCCccc---c---ccchhhhhcccc
Q 046398 30 GCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDL---R---YATTEYEDYMRS 103 (794)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~---~---~~~~~~~~~~~~ 103 (794)
.+.++|++||++||+++.||. .+++|+.+.|||.|+||+|+ ++||++|+|++...... . ...+..+++..+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 347899999999999999988 89999878899999999998 68999999998643221 1 112223333333
Q ss_pred ccceeec--ccccCCCCCCEEeCCCCCCCCCCCCc--ccCCCCCCCEEEcCCCCCCCCCcccc-cCCccccccccCcccc
Q 046398 104 MLSGNVN--PSLVDLKHLTHLDLSGNDFQGIRIPK--YLGSLKNLRYLNLSGAEFAGIIPHQL-GNLSNLRCLDLSWSEY 178 (794)
Q Consensus 104 ~l~g~~~--~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~~~~ 178 (794)
...|..+ +.++++++|++|+|++|.+++. +|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 3444333 4556666666666666665542 455 55666666666666666655555544 5566666666665552
Q ss_pred ccccccccccccCCCCc---cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEE
Q 046398 179 ALQVHSFSWLSGQIPNR---LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID 255 (794)
Q Consensus 179 ~~~~~~~~~~~~~lp~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 255 (794)
.+..|.. +.++++|++|++++|.+++..+ +..+++|++|++++|.+++.+|. ++++++|++|+
T Consensus 164 ----------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~ 229 (768)
T 3rgz_A 164 ----------SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLD 229 (768)
T ss_dssp ----------EEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEE
T ss_pred ----------CCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEE
Confidence 2333433 5566666666666666665544 25666777777777777665554 66777777777
Q ss_pred ccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCC-CCCCEEEc
Q 046398 256 LSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF-KSLRTLSL 334 (794)
Q Consensus 256 L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L 334 (794)
++ ++.+.+.+|..+.++++|+.|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++
T Consensus 230 Ls-~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 230 IS-GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CC-SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-------CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred Cc-CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-------ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 77 55666666777777777777777777776655443 23477777777777777777776654 77888888
Q ss_pred cCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEeccCcccccccChhhhcCCC-CCCEEECcCCcc
Q 046398 335 DDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLS-LGKISHLEYLDLSNNKMNGTLSEIHFVNLT-KLTWFSASGNSL 412 (794)
Q Consensus 335 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~ls~n~l 412 (794)
++|.+++.+|..++++++|++|++++|.+++.+|.. +..+++|++|++++|++.+.+|. .+..++ +|+.|++++|.+
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCCc
Confidence 888777777777777788888888888777777755 77777888888888877776666 455555 777777777777
Q ss_pred eeEcCCCCcC--ccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccc---------cceeccCc
Q 046398 413 ILQVNPNWVP--PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF---------QLSGIIPE 481 (794)
Q Consensus 413 ~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~---------~l~~~~p~ 481 (794)
.+..+..+.. .++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..... .+.+.+|.
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence 7776666655 667888888888888888888888888888888888888888877765432 56677888
Q ss_pred ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccc
Q 046398 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSA 561 (794)
Q Consensus 482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 561 (794)
.+..+++|++|++++|++++.+|..+. .+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.++++
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 888888888888888888888887776 6888888888888888888888888888888888888888888888888888
Q ss_pred ccccccccCCCCccccccccc------------------------------------------ccc------cceeeEEE
Q 046398 562 MATIDSSHQSNAMSYFEVTAY------------------------------------------DCE------VLEDASIV 593 (794)
Q Consensus 562 L~~l~~~~~~~~~~~~~~~~~------------------------------------------~~~------~l~~~~~~ 593 (794)
|+.++.+.+...-.++..... ... ........
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 888876554321111110000 000 00000122
Q ss_pred EeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccc
Q 046398 594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQS 673 (794)
Q Consensus 594 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~ 673 (794)
+.|..+.....++.|+.||+++|+++|.+|.+++++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 34555556667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCCCCCCCCCC
Q 046398 674 MSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENN 725 (794)
Q Consensus 674 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~~~~c~~~~ 725 (794)
++.+++|++||+++|+++|+||..++|++++..+|.|| +|||+|+..|....
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence 99999999999999999999999999999999999999 99999988886443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-63 Score=589.94 Aligned_cols=576 Identities=28% Similarity=0.379 Sum_probs=423.3
Q ss_pred cchhhhhccccccceeecc--cccCCCCCCEEeCCCCCCCCCCCCccc-CCCCCCCEEEcCCCCCCCCCccc---ccCCc
Q 046398 93 ATTEYEDYMRSMLSGNVNP--SLVDLKHLTHLDLSGNDFQGIRIPKYL-GSLKNLRYLNLSGAEFAGIIPHQ---LGNLS 166 (794)
Q Consensus 93 ~~~~~~~~~~~~l~g~~~~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~ 166 (794)
..+..++++++.+.|.+|. .++++++|++|+|++|.+.+. +|..+ .++++|++|+|++|++++..|.. +.+++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 4456677778899999998 899999999999999999874 66665 88999999999999999888877 78899
Q ss_pred cccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccC
Q 046398 167 NLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE 246 (794)
Q Consensus 167 ~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~ 246 (794)
+|++|++++|.+. +..| +.++++|++|++++|.+++.+|. ++++++|++|++++|.+++.++. .+.
T Consensus 179 ~L~~L~Ls~n~l~----------~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~ 244 (768)
T 3rgz_A 179 ELKHLAISGNKIS----------GDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AIS 244 (768)
T ss_dssp TCCEEECCSSEEE----------SCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTT
T ss_pred CCCEEECCCCccc----------ccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHh
Confidence 9999999988754 2232 25677777777777777766665 77777777777777777766665 667
Q ss_pred CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCC
Q 046398 247 NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF 326 (794)
Q Consensus 247 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 326 (794)
++++|++|+++ ++.+.+.+|.. .+++|+.|++++|.+++.+|..+... +++|++|++++|.+++.+|..++.+
T Consensus 245 ~l~~L~~L~Ls-~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~----~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 245 TCTELKLLNIS-SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA----CDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp TCSSCCEEECC-SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTT----CTTCSEEECCSSEEEECCCGGGGGC
T ss_pred cCCCCCEEECC-CCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhh----cCcCCEEECcCCcCCCccchHHhcC
Confidence 77777777777 55555555544 66667777777776666655544332 1266777777777666666666666
Q ss_pred CCCCEEEccCCcCcCCCCCC-cCCCCCCCEEEccCCcccccCCccccCCC-CCCeEeccCcccccccChhhhcC--CCCC
Q 046398 327 KSLRTLSLDDNCISGPLPPA-LGDLSSLTRLDLSRNMLNGSIPLSLGKIS-HLEYLDLSNNKMNGTLSEIHFVN--LTKL 402 (794)
Q Consensus 327 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~--l~~L 402 (794)
++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.++. .+.. +++|
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L 396 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTL 396 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCc
Confidence 77777777777666555544 66666677777777766666666666665 666666666666665554 2323 5566
Q ss_pred CEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccc---------
Q 046398 403 TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF--------- 473 (794)
Q Consensus 403 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~--------- 473 (794)
+.|++++|.+++..+..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.....
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 66666666666666666666666666666666666666666666666666666666666666665544321
Q ss_pred cceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCC
Q 046398 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP 553 (794)
Q Consensus 474 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 553 (794)
.+.+.+|..+.++++|++|++++|++++.+|.++. .+++|++|+|++|++++.+|..+..+++|++||+++|+++|.+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 45567888899999999999999999999999987 79999999999999999999999999999999999999999999
Q ss_pred chhhccccccccccccC-------------------------CCC-----------------ccccccc---ccccccce
Q 046398 554 GCVNNFSAMATIDSSHQ-------------------------SNA-----------------MSYFEVT---AYDCEVLE 588 (794)
Q Consensus 554 ~~~~~l~~L~~l~~~~~-------------------------~~~-----------------~~~~~~~---~~~~~~l~ 588 (794)
..+.....+..+..... +.. ..+.... ......+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 98877665544321110 000 0000000 01112222
Q ss_pred eeEE---EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCc
Q 046398 589 DASI---VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQ 665 (794)
Q Consensus 589 ~~~~---~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 665 (794)
.+.+ ...|..+.....++.|+.|||++|+++|.+|..++++++|++|||++|+++|.+|+.++++++|++|||++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 2222 2456777788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcccccCCCCCCEEeCcCCc-cccc
Q 046398 666 LSSKISQSMSSLSFLNHLNVSNNL-LTGK 693 (794)
Q Consensus 666 l~~~~p~~l~~l~~L~~L~ls~N~-l~g~ 693 (794)
++|.||.. ..+..+....+.+|+ +.|.
T Consensus 716 l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 716 LSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp EEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred ccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 99999975 345556667778886 5654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-56 Score=522.91 Aligned_cols=567 Identities=23% Similarity=0.245 Sum_probs=413.6
Q ss_pred CcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCC
Q 046398 75 GHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEF 154 (794)
Q Consensus 75 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l 154 (794)
.+++.|++++ +.+.+..+..+.++++|++|+|++|.+++. .|..++++++|++|+|++|.+
T Consensus 25 ~~l~~L~Ls~------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 25 TNITVLNLTH------------------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp TTCSEEECCS------------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCC
T ss_pred CCCcEEECCC------------------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCcc
Confidence 4677777776 577777777899999999999999999975 688889999999999999999
Q ss_pred CCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeecc
Q 046398 155 AGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN 234 (794)
Q Consensus 155 ~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 234 (794)
++..+..|+++++|++|++++|.+. +..|..++++++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQ----------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCC----------CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CccChhhhccCCCCCEEECCCCccC----------ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 9666667999999999999988743 344578999999999999999999999988999999999999999
Q ss_pred CCCCCCCcccc--CCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeec
Q 046398 235 GLQGTISSIGL--ENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSS 312 (794)
Q Consensus 235 ~l~~~i~~~~l--~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~ 312 (794)
.+++..+. .+ ..+++|++|+++ .+.+.+..|..+..+.+|+.+++.++.+.+.....+... ...++|++|++++
T Consensus 156 ~l~~~~~~-~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 156 KIQALKSE-ELDIFANSSLKKLELS-SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE--LANTSIRNLSLSN 231 (680)
T ss_dssp CCCCBCHH-HHGGGTTCEESEEECT-TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH--HTTSCCCEEECTT
T ss_pred cccccCHH-HhhccccccccEEECC-CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH--hhhccccEEEccC
Confidence 99865443 33 366899999999 668888888889888888888888887765443333211 1234788888888
Q ss_pred ccccccccccccCCCC--CCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccc
Q 046398 313 SQISGHLTSQLGQFKS--LRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGT 390 (794)
Q Consensus 313 n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 390 (794)
|.+++..+..+..++. |++|++++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|++++|...+.
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence 8888888887777654 88888888888877777888888888888888888887787888888888888887755432
Q ss_pred --------cChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC--CCcccCC--CCCCCEEeccCC
Q 046398 391 --------LSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ--FPSWLHS--QKNLSVLDISNA 458 (794)
Q Consensus 391 --------~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~--l~~L~~L~Ls~n 458 (794)
+....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+... ....+.. .++|+.|++++|
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 2233567788888888888888877777777788888888888765332 1122222 257888888888
Q ss_pred CCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCC
Q 046398 459 RISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538 (794)
Q Consensus 459 ~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 538 (794)
++++ ..|..+..+++|+.|++++|++++.+|...+.++++|++|++++|++.+..+..|..+++|
T Consensus 392 ~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 392 KISK---------------IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456 (680)
T ss_dssp CCCE---------------ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred CCCe---------------EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence 7765 3455667777788888888877766765444567777788888877777777777777777
Q ss_pred CEEEccCCcCc--ccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCC
Q 046398 539 QILDVANNSLS--GTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN 616 (794)
Q Consensus 539 ~~L~Ls~N~l~--~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 616 (794)
+.|++++|.+. +.+|..+.++++|+.++.+.+... +........++.|++|++++|
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~----------------------~i~~~~~~~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA----------------------NINDDMLEGLEKLEILDLQHN 514 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSS
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCCCC----------------------cCChhhhccccccCEEeCCCC
Confidence 77777777776 456777777777777765543210 111122234556677777777
Q ss_pred ccccccC--------hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 617 NFSGEIP--------MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 617 ~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
++++..+ ..++.+++|++|+|++|+++...+..|+++++|+.|+|++|++++..+..+..+++|+.|++++|
T Consensus 515 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 7765321 22566677777777777777332335677777777777777777666666667777777777777
Q ss_pred cccccCCCC-C-ccCccCcccccCC
Q 046398 689 LLTGKIPSS-T-QLQSFDASCFVGN 711 (794)
Q Consensus 689 ~l~g~iP~~-~-~~~~~~~~~~~gn 711 (794)
++++.+|.. . .+..+....+.||
T Consensus 595 ~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 595 LITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp CCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred cCCccChhHhcccccccCEEEccCC
Confidence 777665532 1 3445555556666
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-54 Score=501.77 Aligned_cols=508 Identities=21% Similarity=0.205 Sum_probs=369.8
Q ss_pred cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV 182 (794)
Q Consensus 103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 182 (794)
+.+++..+..|.++++|++|+|++|+++++ .|..|+.+++|++|+|++|++++..|..|+++++|++|++++|.+.
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--- 118 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS--- 118 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS---
T ss_pred CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc---
Confidence 355555555666666666666666666653 4556666666666666666666656666666666666666666533
Q ss_pred ccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCc--EEEccCCC
Q 046398 183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK--TIDLSLNF 260 (794)
Q Consensus 183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~--~L~L~~~~ 260 (794)
+..|..++++++|++|++++|.+++.....+..+++|++|++++|.+++..+. .++.+++|+ +|+++ ++
T Consensus 119 -------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l~-~n 189 (606)
T 3t6q_A 119 -------SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLN-GN 189 (606)
T ss_dssp -------CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEECT-TC
T ss_pred -------cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hhhhhcccceeEEecC-CC
Confidence 22244566666666666666666664433344466666666666666533333 556666666 56665 44
Q ss_pred CCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc-----ccccccccCCC--CCCEEE
Q 046398 261 ELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS-----GHLTSQLGQFK--SLRTLS 333 (794)
Q Consensus 261 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~--~L~~L~ 333 (794)
.+.+..|..+. ..+|+.|+++++. ..+..+..+. .++...+....+. ...+..+..+. +|+.|+
T Consensus 190 ~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~-----~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 190 DIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLK-----NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp CCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTT-----TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred ccCccChhHhh-hccccccccCCch---hHHHHhhhcc-----ccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 55544444433 2456666666654 2333333332 2222222111111 11122222222 688899
Q ss_pred ccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398 334 LDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413 (794)
Q Consensus 334 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~ 413 (794)
+++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+.
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcc
Confidence 9999998877777888999999999999888 778888888999999999998885444 47888899999999999887
Q ss_pred eEcCCC-CcCccccceEecccccCCCCC--CcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCC
Q 046398 414 LQVNPN-WVPPFQLKTLLLMSCHLGPQF--PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE 490 (794)
Q Consensus 414 ~~~~~~-~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~ 490 (794)
+..+.. +..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+ ..|..+..+++|+
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS---------------LKTEAFKECPQLE 403 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE---------------ECTTTTTTCTTCS
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc---------------CCHHHhcCCccCC
Confidence 666554 677888999999999887765 7778899999999999998765 4567788899999
Q ss_pred EEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccC---Cchhhcccccccccc
Q 046398 491 VLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTM---PGCVNNFSAMATIDS 567 (794)
Q Consensus 491 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~l~~ 567 (794)
+|++++|++++..|...+..+++|+.|++++|++++..|..+..+++|++|++++|++++.. +..+..
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------- 474 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------- 474 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG---------
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc---------
Confidence 99999999987766654457899999999999999888889999999999999999987621 223333
Q ss_pred ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647 (794)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 647 (794)
++.|+.|++++|++++..|..++.+++|++|+|++|++++.+|
T Consensus 475 -------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 475 -------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp -------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred -------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 4455999999999999999999999999999999999999999
Q ss_pred ccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398 648 ENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
+.+.+++.| .|++++|++++.+|..+..+++|+.|++++|++.+..+.
T Consensus 518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999 999999999999999999999999999999999988764
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-55 Score=506.92 Aligned_cols=507 Identities=19% Similarity=0.235 Sum_probs=343.4
Q ss_pred CCHHHHHHHHHHHhcCCCCC--------CCCCCCCCCCCCcce---eeeEecCCCCcEEEEEcCCCCCccccccchhhhh
Q 046398 31 CTDSEREALLKLKQDLKDPS--------NRLGSWVVDGDCCKW---AEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYED 99 (794)
Q Consensus 31 ~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~ 99 (794)
....|++||.++++++.++. +..++|+.+.+||.| .||+|+. .|||++|+|++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~--------------- 90 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG--------------- 90 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTT---------------
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecC---------------
Confidence 44579999999999986442 234589988999999 9999975 48999999998
Q ss_pred ccccccceeecccccCCCCCCEEeCCCCCCCCC-----------CCCcccCCCCCCCEEEcCCCCCCCCCcccccC-Ccc
Q 046398 100 YMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGI-----------RIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN-LSN 167 (794)
Q Consensus 100 ~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~ 167 (794)
+.+.|.+|++++++++|++|+|++|.+... .+|... +.+|| +++++|.+.+.+|..+.. +.+
T Consensus 91 ---~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 91 ---FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp ---SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHH
T ss_pred ---cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHH
Confidence 489999999999999999999999976210 133333 45677 888888888877776663 334
Q ss_pred ccccccCccccccccccccccccCCCCccCCCCCCCEEECc--CCCCCCCCCccccCCCCCCeEeeeccCCCCC------
Q 046398 168 LRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLS--ANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT------ 239 (794)
Q Consensus 168 L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------ 239 (794)
+..+++....+. ......++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 165 l~~~~l~~~~~~----------------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 165 CINSDPQQKSIK----------------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp HHHHCTTSCCCC----------------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred HhhcCccccccc----------------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccc
Confidence 444444321111 1112223333333 466777 677777888888888888887764
Q ss_pred -----------CCccccC--CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCC-CCc-chHHHHHhhh-hcCcC
Q 046398 240 -----------ISSIGLE--NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVK-LSQ-DLSQVLDILS-ACGAS 303 (794)
Q Consensus 240 -----------i~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~~~~l~~l~-~~~~~ 303 (794)
+|. .++ ++++|++|+++ ++.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+. ...++
T Consensus 228 ~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 228 ENENSEYAQQYKTE-DLKWDNLKDLTDVEVY-NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp SCTTSHHHHHHTTS-CCCGGGCTTCCEEEEE-CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred cccccchhcccCch-hhhhcccCCCCEEEec-CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 666 666 88888888888 667778888888888888888888888 887 7888777651 01112
Q ss_pred CccEEEeecccccccccc--cccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCC-CCeE
Q 046398 304 ALESLVFSSSQISGHLTS--QLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH-LEYL 380 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L 380 (794)
+|++|++++|+++ .+|. .++.+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 6666666666666 4555 56666666666666666665565 5666666666666666665 55555666665 6666
Q ss_pred eccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCC--CCCCCEEeccCC
Q 046398 381 DLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS--QKNLSVLDISNA 458 (794)
Q Consensus 381 ~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n 458 (794)
++++|.++ .+|. .+.. +++|++|++++|
T Consensus 383 ~Ls~N~l~-~lp~-------------------------------------------------~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 383 SFAHNKLK-YIPN-------------------------------------------------IFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSSCCS-SCCS-------------------------------------------------CCCTTCSSCEEEEECCSS
T ss_pred EccCCcCc-ccch-------------------------------------------------hhhhcccCccCEEECcCC
Confidence 66666554 3332 2222 124555555555
Q ss_pred CCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcc-ccC---
Q 046398 459 RISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ-LCR--- 534 (794)
Q Consensus 459 ~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~--- 534 (794)
++++.+|.++.. .......+++|++|++++|+++ .+|..++..+++|+.|+|++|+++ .+|.. +..
T Consensus 413 ~l~~~~p~~l~~--------~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 413 EIGSVDGKNFDP--------LDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp CTTTTTTCSSCT--------TCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred cCCCcchhhhcc--------cccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 555432221100 0000114556777777777776 666666655677777777777776 34433 222
Q ss_pred ----CCCCCEEEccCCcCcccCCchhh--ccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398 535 ----LTSLQILDVANNSLSGTMPGCVN--NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV 608 (794)
Q Consensus 535 ----l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L 608 (794)
+++|++|++++|+++ .+|..+. .+++ |
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~----------------------------------------------L 515 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY----------------------------------------------L 515 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT----------------------------------------------C
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCC----------------------------------------------c
Confidence 237888888888877 5665543 3333 3
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEec------ccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCE
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNL------SHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNH 682 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 682 (794)
+.|++++|++++ +|..+..+++|+.|+| ++|++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCE
Confidence 778888888886 7888888888888888 56788889999999999999999999999 67887765 78999
Q ss_pred EeCcCCcccc
Q 046398 683 LNVSNNLLTG 692 (794)
Q Consensus 683 L~ls~N~l~g 692 (794)
|++++|++..
T Consensus 592 L~Ls~N~l~~ 601 (636)
T 4eco_A 592 LDIKDNPNIS 601 (636)
T ss_dssp EECCSCTTCE
T ss_pred EECcCCCCcc
Confidence 9999998774
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-54 Score=513.34 Aligned_cols=551 Identities=22% Similarity=0.241 Sum_probs=416.0
Q ss_pred cceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCC-CcccCCC
Q 046398 63 CKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRI-PKYLGSL 141 (794)
Q Consensus 63 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l 141 (794)
|+|.+|.+ ...+++.|+|++ +.+++..+..+.++++|++|+|++|...+. + |..|+++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~------------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L 72 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF------------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNL 72 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES------------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSC
T ss_pred CCCCCCCC--CCCCcCEEECCC------------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCC
Confidence 45666665 356778888877 477887888899999999999999965543 4 7778999
Q ss_pred CCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCc--cCCCCCCCEEECcCCCCCCCCC-c
Q 046398 142 KNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR--LGNLTSLRHLDLSANKFNSTTA-G 218 (794)
Q Consensus 142 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~--l~~l~~L~~L~Ls~n~l~~~~~-~ 218 (794)
++|++|+|++|.+++..|+.|+++++|++|+|++|.+ .+.+|.. +.++++|++|++++|.+++..+ .
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l----------~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 142 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL----------SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC----------SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC----------CcccccCccccccCCCCEEECCCCcccccccch
Confidence 9999999999999988899999999999999988874 4445554 8889999999999999988765 5
Q ss_pred cccCCCCCCeEeeeccCCCCCCCccccCCC--CCCcEEEccCCCCCCCCCchhhhccCC------CCEEEccCCCCCcch
Q 046398 219 WLSKFNHLEFLSLSSNGLQGTISSIGLENL--TSIKTIDLSLNFELGGPIPTSFVRLCE------LTSIDVSDVKLSQDL 290 (794)
Q Consensus 219 ~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~l~~~~ 290 (794)
.++++++|++|++++|.+++..+. .+..+ ++|+.|+++ .+.+.+..|..+..+.+ |+.|++++|.+++..
T Consensus 143 ~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 220 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLA-ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220 (844)
T ss_dssp GGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEEC-CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred hHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECC-CCccccccccchhhcCCccccCceeEEecCCCcCchhH
Confidence 788999999999999998876665 67666 889999998 66777777776666555 899999999888777
Q ss_pred HHHHHhhhhcCcCCccEEEeecc---------cccccccccccCC--CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEcc
Q 046398 291 SQVLDILSACGASALESLVFSSS---------QISGHLTSQLGQF--KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLS 359 (794)
Q Consensus 291 ~~~l~~l~~~~~~~L~~L~L~~n---------~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 359 (794)
+..+.... ....++.+.+..+ .+.+.....+..+ ++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 221 ~~~~~~~l--~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 221 TGNFSNAI--SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp TSGGGGTS--CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred HHHHHhhc--CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 66554321 2236777777633 3333333444443 678888888888887778888888888888888
Q ss_pred CCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC
Q 046398 360 RNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ 439 (794)
Q Consensus 360 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 439 (794)
+|.+++..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++.
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 8888877788888888888888888888744443 788888888888888888777777777788888888888877642
Q ss_pred CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEc
Q 046398 440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL 519 (794)
Q Consensus 440 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L 519 (794)
..+++|+.|++++|+++. +|.. ..+++.|++++|++++.-.......+++|+.|+|
T Consensus 378 -----~~~~~L~~L~l~~N~l~~----------------l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 378 -----HFIPSIPDIFLSGNKLVT----------------LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp -----SSCCSCSEEEEESCCCCC----------------CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred -----cCCCCcchhccCCCCccc----------------cccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 236778888888888774 3322 4578888888888874222222236788888888
Q ss_pred ccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccc
Q 046398 520 RSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSM 598 (794)
Q Consensus 520 ~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 598 (794)
++|++++..+. .+..+++|+.|++++|.+++..+... .
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~-----------------------------------------~ 472 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL-----------------------------------------C 472 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC-----------------------------------------C
T ss_pred CCCcccccccccccccCCccccccCCCCcccccccccc-----------------------------------------c
Confidence 88888765433 35567888888888888864332110 0
Q ss_pred hhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCC
Q 046398 599 VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS 678 (794)
Q Consensus 599 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 678 (794)
......++.|+.|||++|++++..|..+..+++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..+ .
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~ 547 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V 547 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence 01122355679999999999999998999999999999999999977666665 899999999999999999775 4
Q ss_pred CCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCCCC-CCCC
Q 046398 679 FLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLP-SCTE 723 (794)
Q Consensus 679 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~~~-~c~~ 723 (794)
+|+.+++++|++.+..+.. .|......+| .++|.+.. .|..
T Consensus 548 ~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 548 SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCC
Confidence 7899999999999887643 2222222345 67776655 6754
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-53 Score=498.22 Aligned_cols=557 Identities=21% Similarity=0.241 Sum_probs=459.9
Q ss_pred CcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEEcCCCC
Q 046398 75 GHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPK-YLGSLKNLRYLNLSGAE 153 (794)
Q Consensus 75 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~ 153 (794)
.+++.|++++ +.+.+..|..+.++++|++|+|++|.++. +|. .|+.+++|++|++++|+
T Consensus 49 ~~L~~L~Ls~------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 49 SQLTSLDVGF------------------NTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp TTCSEEECCS------------------SCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSC
T ss_pred CcCcEEECCC------------------CccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEEECCCCc
Confidence 3567777776 47888888889999999999999999995 454 69999999999999999
Q ss_pred CCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcccc--CCCCCCeEee
Q 046398 154 FAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLS--KFNHLEFLSL 231 (794)
Q Consensus 154 l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L 231 (794)
+++..|..|+++++|++|++++|. +.+..|..++++++|++|++++|.+++..+..+. .+++|++|++
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~----------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNG----------LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSC----------CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred cCccChhHccccCCCCEEECCCCc----------ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 998888899999999999999887 4456778899999999999999999998887664 5689999999
Q ss_pred eccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhh---ccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEE
Q 046398 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFV---RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESL 308 (794)
Q Consensus 232 ~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L 308 (794)
++|.+++..+. .+..+++|+.+++. ++.+.+.....+. ..++|+.|++++|.+.+..+..+..+. .++|++|
T Consensus 179 ~~n~l~~~~~~-~~~~l~~L~~L~l~-~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L 253 (680)
T 1ziw_A 179 SSNQIKEFSPG-CFHAIGRLFGLFLN-NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTML 253 (680)
T ss_dssp TTCCCCCBCTT-GGGGSSEECEEECT-TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEE
T ss_pred CCCcccccChh-hhhhhhhhhhhhcc-ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEE
Confidence 99999976666 88999999999998 4444332222211 347899999999999998887776654 1259999
Q ss_pred EeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc-----cCCc----cccCCCCCCe
Q 046398 309 VFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG-----SIPL----SLGKISHLEY 379 (794)
Q Consensus 309 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~----~l~~l~~L~~ 379 (794)
++++|.+++..+..++.+++|++|++++|.+++..|..+.++++|++|++++|...+ .+|. .+..+++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 999999999999999999999999999999999889999999999999999876553 2332 6788999999
Q ss_pred EeccCcccccccChhhhcCCCCCCEEECcCCccee--EcCCCCcC--ccccceEecccccCCCCCCcccCCCCCCCEEec
Q 046398 380 LDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLIL--QVNPNWVP--PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455 (794)
Q Consensus 380 L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 455 (794)
|++++|.+.+. +...|.++++|+.|++++|.+.. .....+.. ..+|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 334 L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 334 LNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EECCSCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCccCCC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 99999999864 44478999999999999997543 22233332 258999999999999999999999999999999
Q ss_pred cCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc--ccCCcccc
Q 046398 456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD--GFLPIQLC 533 (794)
Q Consensus 456 s~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~ 533 (794)
++|++++.+| +..+.++++|++|++++|++++..+..+. .+++|+.|++++|.+. +.+|..+.
T Consensus 413 ~~N~l~~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 413 GLNEIGQELT--------------GQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp CSSCCEEECC--------------SGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred CCCcCccccC--------------cccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccc
Confidence 9998875322 25678899999999999999855555444 7999999999999987 56788999
Q ss_pred CCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEc
Q 046398 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDV 613 (794)
Q Consensus 534 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdL 613 (794)
.+++|++|++++|++++..|..+.++++|+.++.+.+.... +..... .+........++.|+.|++
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~-------------~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR-LWKHAN-------------PGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG-GGSTTS-------------TTSCCCTTTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc-cchhhc-------------cCCcchhhcCCCCCCEEEC
Confidence 99999999999999998888889999999988776543110 000000 0001123456788999999
Q ss_pred CCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccccc-CCCCCCEEeCcCCcccc
Q 046398 614 SKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMS-SLSFLNHLNVSNNLLTG 692 (794)
Q Consensus 614 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g 692 (794)
++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 99999954445689999999999999999976667789999999999999999999888887 78999999999999999
Q ss_pred cCCC
Q 046398 693 KIPS 696 (794)
Q Consensus 693 ~iP~ 696 (794)
..+.
T Consensus 624 ~c~~ 627 (680)
T 1ziw_A 624 TCES 627 (680)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8775
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-53 Score=491.91 Aligned_cols=503 Identities=19% Similarity=0.177 Sum_probs=377.4
Q ss_pred cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV 182 (794)
Q Consensus 103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 182 (794)
+.+.+..+..+.++++|++|+|++|.++++ .|..|+++++|++|+|++|.+++..|+.|+++++|++|++++|.+.
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--- 117 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA--- 117 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC---
T ss_pred CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc---
Confidence 467776666788888888888888888764 5667788888888888888887777778888888888888777643
Q ss_pred ccccccccCCCCccCCCCCCCEEECcCCCCCC-CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCc----EEEcc
Q 046398 183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK----TIDLS 257 (794)
Q Consensus 183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~----~L~L~ 257 (794)
+..|..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+. .++.+++|+ +|+++
T Consensus 118 -------~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 118 -------SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp -------CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEECT
T ss_pred -------cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccceeecc
Confidence 3334667788888888888888776 4577788888888888888887754443 555555443 77887
Q ss_pred CCCCCCCCCchhhhccCCCCEEEccCCCCCc-chHHHHHhhhhcCcCCccEEEeeccccccc------ccccccCCC--C
Q 046398 258 LNFELGGPIPTSFVRLCELTSIDVSDVKLSQ-DLSQVLDILSACGASALESLVFSSSQISGH------LTSQLGQFK--S 328 (794)
Q Consensus 258 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~------~~~~l~~l~--~ 328 (794)
.+.+.+..+..+.. .+|+.|++++|.+.+ ..+..+..+. .++.+++..+.+.+. .+..+..+. .
T Consensus 190 -~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 190 -LNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLA-----GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp -TCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTT-----TCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred -CCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhcccc-----ccccccccccccccCCcccccChHHhhhhhhcc
Confidence 55555444444433 378888888887763 4455555555 677766654433221 111122221 3
Q ss_pred CCEEEc-cCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398 329 LRTLSL-DDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407 (794)
Q Consensus 329 L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l 407 (794)
++.+++ ..+.+.+..|. +..+++|++|++++|.+. .+| .+..+++|++|++++|.+ +.+|. + .+++|+.|++
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l 335 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTL 335 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEE
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc--C-CCCccceeec
Confidence 455666 56677766666 777888888888888886 455 677888888888888888 57773 3 7888888888
Q ss_pred cCCcceeEcCCCCcCccccceEecccccCCCC--CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC
Q 046398 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ--FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN 485 (794)
Q Consensus 408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~ 485 (794)
++|...... .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++ +|..+..
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~----------------~~~~~~~ 397 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII----------------MSANFMG 397 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE----------------ECCCCTT
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc----------------chhhccC
Confidence 888655444 455677888888888887765 37778888889999999888664 5567888
Q ss_pred CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccc
Q 046398 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMAT 564 (794)
Q Consensus 486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~ 564 (794)
+++|+.|++++|++.+..|...+..+++|+.|++++|++.+..|..+..+++|++|++++|++++ .+|..+..+++|
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-- 475 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-- 475 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC--
Confidence 88899999999988866663334478889999999999888888888888999999999998887 366666555444
Q ss_pred cccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccc
Q 046398 565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG 644 (794)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 644 (794)
+.|++++|++++..|..++.+++|++|+|++|++++
T Consensus 476 --------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 476 --------------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp --------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred --------------------------------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 889999999999999999999999999999999998
Q ss_pred cCCccccccCCCCEEeCCCCcCcccCcccccCCC-CCCEEeCcCCcccccCCC
Q 046398 645 QIPENIGNLISIESLDFSTNQLSSKISQSMSSLS-FLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 645 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~ 696 (794)
.+|..++++++|+.|+|++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 88999999999999999999998 5777788887 599999999999988775
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-51 Score=478.32 Aligned_cols=519 Identities=20% Similarity=0.183 Sum_probs=430.0
Q ss_pred eecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccc
Q 046398 108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSW 187 (794)
Q Consensus 108 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 187 (794)
.+|..+.. ++++|+|++|.++++ .|..|+++++|++|+|++|++++..|..|+++++|++|++++|.+
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--------- 93 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL--------- 93 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------
T ss_pred cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc---------
Confidence 45555543 789999999999975 578899999999999999999988899999999999999998874
Q ss_pred cccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCc
Q 046398 188 LSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIP 267 (794)
Q Consensus 188 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~ 267 (794)
.+..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+++.... .+..+++|++|+++ ++.+.+..+
T Consensus 94 -~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~-~n~l~~~~~ 170 (606)
T 3t6q_A 94 -IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQ-NNAIHYLSK 170 (606)
T ss_dssp -SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECC-SSCCCEECH
T ss_pred -cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcc-cCcccccCh
Confidence 455688899999999999999999998788899999999999999999863323 45559999999999 677888888
Q ss_pred hhhhccCCCC--EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC----
Q 046398 268 TSFVRLCELT--SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG---- 341 (794)
Q Consensus 268 ~~l~~l~~L~--~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---- 341 (794)
..+..+++|+ .|++++|.+.+..+..+.. ..|++|++++|.. .+..+..+.+++...+....+.+
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~------~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDS------AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTT------CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhh------ccccccccCCchh---HHHHhhhccccchhheechhhcccccc
Confidence 8899999999 8999999998877665443 2789999988862 33444445554443333222221
Q ss_pred -CCCCCcCCCC--CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCC
Q 046398 342 -PLPPALGDLS--SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNP 418 (794)
Q Consensus 342 -~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 418 (794)
..+..+..+. +|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|.+....+.
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh-hhcccccCCEEECccCCcCcCchh
Confidence 1122233332 7999999999999888888999999999999999998 6776 588999999999999999988888
Q ss_pred CCcCccccceEecccccCCCCCCc-ccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCC
Q 046398 419 NWVPPFQLKTLLLMSCHLGPQFPS-WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497 (794)
Q Consensus 419 ~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n 497 (794)
.+..+++|++|++++|.+.+.++. .+..+++|++|++++|++++.. ..+..+..+++|++|++++|
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD-------------CCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE-------------ESTTTTTTCTTCCEEECCSC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc-------------CcchhcccCCCCCEEECCCC
Confidence 888999999999999998866654 5889999999999999987621 12667889999999999999
Q ss_pred cccccCChhhhhcCCCCcEEEcccccccccCCcc-ccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccc
Q 046398 498 EFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSY 576 (794)
Q Consensus 498 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~ 576 (794)
++++..|..+. .+++|+.|++++|++.+..|.. +..+++|++|++++|.+++..|..+..+++|
T Consensus 387 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 451 (606)
T 3t6q_A 387 EPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-------------- 451 (606)
T ss_dssp SCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC--------------
T ss_pred cCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC--------------
Confidence 99876666665 7999999999999999876654 8899999999999999998888777665555
Q ss_pred ccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc---cChhhhcccCCCEEecccccccccCCcccccc
Q 046398 577 FEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE---IPMELTYLRGLQSLNLSHNIFTGQIPENIGNL 653 (794)
Q Consensus 577 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 653 (794)
+.|++++|++++. .+..+..+++|++|+|++|++++..|..|+++
T Consensus 452 --------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 452 --------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp --------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred --------------------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 8999999999873 33678999999999999999999999999999
Q ss_pred CCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCc
Q 046398 654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNL 713 (794)
Q Consensus 654 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~l 713 (794)
++|+.|+|++|++++.+|..+..++.| +|++++|++++.+|.. ..+..+....+.||.+
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 999999999999999999999999999 9999999999888764 4556666777888843
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.1e-53 Score=494.95 Aligned_cols=495 Identities=19% Similarity=0.241 Sum_probs=304.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC-----CCC--cce------------eeeEecCCCCcEEEEEcCCCCCcc
Q 046398 29 VGCTDSEREALLKLKQDLKDPSNRLGSWVVD-----GDC--CKW------------AEVVCSNLTGHVLQLSLRNPFRND 89 (794)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~L~l~~~~~~~ 89 (794)
+.+..+|++||++||+++.+| +|+.+ .+| |.| .||+|+. .+||++|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 345678999999999999876 68633 356 999 9999986 68999999998
Q ss_pred ccccchhhhhccccccceeecccccCCCCCCEEeC-CCCCCCCCCCCcccCCC-CCCCEEE---c------------CCC
Q 046398 90 LRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDL-SGNDFQGIRIPKYLGSL-KNLRYLN---L------------SGA 152 (794)
Q Consensus 90 ~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~~L~---L------------s~n 152 (794)
+++.|.+|++++++++|++|+| ++|.+.+. .|-..... ..+.... + ...
T Consensus 333 -------------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 333 -------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp -------------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred -------------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 4899999999999999999999 88877654 22211111 0000000 0 000
Q ss_pred CCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcC--CCCCCCCCccccCCCCCCeEe
Q 046398 153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSA--NKFNSTTAGWLSKFNHLEFLS 230 (794)
Q Consensus 153 ~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~ 230 (794)
.+.+..+..+...+. ..+........++.+.+.. |.+++ +|..++++++|++|+
T Consensus 399 ~~s~l~~~~l~~~~~-----------------------~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~ 454 (876)
T 4ecn_A 399 NLSDLLQDAINRNPE-----------------------MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIY 454 (876)
T ss_dssp GSCHHHHHHHHTCTT-----------------------SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred hhhHHHHHHhhhCcc-----------------------ccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEE
Confidence 000000000000000 0000011112222222222 44444 444455555555555
Q ss_pred eeccCCCC-----------------CCCccccC--CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCC-CCc-c
Q 046398 231 LSSNGLQG-----------------TISSIGLE--NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVK-LSQ-D 289 (794)
Q Consensus 231 L~~n~l~~-----------------~i~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~-~ 289 (794)
+++|.+++ .+|. .++ ++++|++|+++ +|.+.+.+|..+.++++|+.|++++|+ +++ .
T Consensus 455 Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls-~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~ 532 (876)
T 4ecn_A 455 FANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532 (876)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEE-SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH
T ss_pred CcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECc-CCCCCccChHHHhCCCCCCEEECcCCCCccccc
Confidence 55555554 3666 555 78888888887 666777888888888888888888887 887 7
Q ss_pred hHHHHHhhh--hcCcCCccEEEeecccccccccc--cccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc
Q 046398 290 LSQVLDILS--ACGASALESLVFSSSQISGHLTS--QLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG 365 (794)
Q Consensus 290 ~~~~l~~l~--~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 365 (794)
+|..+..+. ...+++|++|++++|.++ .+|. .++.+++|++|++++|.++ .+| .++.+++|++|++++|.++
T Consensus 533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~- 608 (876)
T 4ecn_A 533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE- 608 (876)
T ss_dssp HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-
T ss_pred chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-
Confidence 887776653 334568999999999999 7777 8999999999999999998 777 8999999999999999999
Q ss_pred cCCccccCCCC-CCeEeccCcccccccChhhhcCCC--CCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCc
Q 046398 366 SIPLSLGKISH-LEYLDLSNNKMNGTLSEIHFVNLT--KLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPS 442 (794)
Q Consensus 366 ~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 442 (794)
.+|..+..+++ |++|++++|.+. .+|. .+..++ +|+.|++++|.
T Consensus 609 ~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~~~~L~~L~Ls~N~------------------------------- 655 (876)
T 4ecn_A 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNK------------------------------- 655 (876)
T ss_dssp CCCTTSCEECTTCCEEECCSSCCC-SCCS-CCCTTCSSCEEEEECCSSC-------------------------------
T ss_pred cchHHHhhccccCCEEECcCCCCC-cCch-hhhccccCCCCEEECcCCc-------------------------------
Confidence 88888999999 999999999987 5553 222222 13333333333
Q ss_pred ccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccC--CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcc
Q 046398 443 WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK--NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR 520 (794)
Q Consensus 443 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 520 (794)
+.+.+|. ++..+. .+++|+.|++++|+++ .+|..++..+++|+.|+|+
T Consensus 656 -----------------l~g~ip~------------l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 656 -----------------IGSEGRN------------ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILS 705 (876)
T ss_dssp -----------------TTTTSSS------------CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECC
T ss_pred -----------------CCCcccc------------chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECC
Confidence 3322111 111111 1234445555555544 4444444344455555555
Q ss_pred cccccccCCccccC--------CCCCCEEEccCCcCcccCCchhh--ccccccccccccCCCCcccccccccccccceee
Q 046398 521 SNKFDGFLPIQLCR--------LTSLQILDVANNSLSGTMPGCVN--NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA 590 (794)
Q Consensus 521 ~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 590 (794)
+|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++
T Consensus 706 ~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~----------------------------- 754 (876)
T 4ecn_A 706 NNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY----------------------------- 754 (876)
T ss_dssp SCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT-----------------------------
T ss_pred CCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC-----------------------------
Confidence 55544 23322221 125555555555555 3443332 2222
Q ss_pred EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccc------ccccccCCccccccCCCCEEeCCCC
Q 046398 591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSH------NIFTGQIPENIGNLISIESLDFSTN 664 (794)
Q Consensus 591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N 664 (794)
|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..++++++|+.|+|++|
T Consensus 755 -----------------L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 755 -----------------LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp -----------------CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred -----------------cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 2555555555554 455555555555555544 6666666666666677777777777
Q ss_pred cCcccCcccccCCCCCCEEeCcCCccccc
Q 046398 665 QLSSKISQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 665 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
++ +.+|..+. ++|+.|||++|++...
T Consensus 817 ~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 817 DI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 66 55666544 4667777777766543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-51 Score=478.66 Aligned_cols=521 Identities=20% Similarity=0.168 Sum_probs=422.1
Q ss_pred cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV 182 (794)
Q Consensus 103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 182 (794)
.+++ .+|..+. +++++|+|++|.+++. .+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+
T Consensus 21 ~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l---- 92 (606)
T 3vq2_A 21 QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI---- 92 (606)
T ss_dssp SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc----
Confidence 3443 3455444 7899999999999865 566889999999999999999988888899999999999998874
Q ss_pred ccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCC-CCCccccCCCCCCcEEEccCCCC
Q 046398 183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG-TISSIGLENLTSIKTIDLSLNFE 261 (794)
Q Consensus 183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~~~~ 261 (794)
.+..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|++|+++ ++.
T Consensus 93 ------~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls-~n~ 164 (606)
T 3vq2_A 93 ------QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLS-YNY 164 (606)
T ss_dssp ------CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECC-SSC
T ss_pred ------cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEcc-CCc
Confidence 34558889999999999999999998888889999999999999999875 5676 88999999999999 667
Q ss_pred CCCCCchhhhccCCCC----EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc-ccccccccCCCCCCEEEccC
Q 046398 262 LGGPIPTSFVRLCELT----SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS-GHLTSQLGQFKSLRTLSLDD 336 (794)
Q Consensus 262 ~~~~~~~~l~~l~~L~----~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~ 336 (794)
+.+..+..+..+.+|+ .+++++|.+++..+..+.. .+|++|++++|.++ +..|..+..+++|+.+++..
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccC------ceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 7777777777666554 8999999988665544332 27899999999887 46677888899999888865
Q ss_pred CcCcCC------CCCCcCCCC--CCCEEEc-cCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398 337 NCISGP------LPPALGDLS--SLTRLDL-SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407 (794)
Q Consensus 337 n~l~~~------~p~~l~~l~--~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l 407 (794)
+.+.+. .+..+.++. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .++ .+..+++|+.|++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l 314 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSI 314 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEE
T ss_pred cccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEc
Confidence 544321 111122222 4566777 67788877776 888999999999999986 566 6788899999999
Q ss_pred cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS 487 (794)
Q Consensus 408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~ 487 (794)
++|.+ +.++ .+ .+++|++|++++|...+.. .+..+++|++|++++|++++. +.+|..+..++
T Consensus 315 ~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~-------------~~~~~~~~~~~ 376 (606)
T 3vq2_A 315 IRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS-------------GCCSYSDLGTN 376 (606)
T ss_dssp ESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE-------------EECCHHHHCCS
T ss_pred ccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC-------------cchhhhhccCC
Confidence 99998 5555 55 8889999999999655544 567889999999999987652 12366778889
Q ss_pred CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398 488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566 (794)
Q Consensus 488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 566 (794)
+|++|++++|+++ .+|..+. .+++|+.|++++|++.+..| ..+..+++|++|++++|++++..|..+.++++|
T Consensus 377 ~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---- 450 (606)
T 3vq2_A 377 SLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL---- 450 (606)
T ss_dssp CCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----
T ss_pred cccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC----
Confidence 9999999999988 5775555 68999999999999998877 688899999999999999998888777665555
Q ss_pred cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc-ccChhhhcccCCCEEeccccccccc
Q 046398 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-EIPMELTYLRGLQSLNLSHNIFTGQ 645 (794)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~ 645 (794)
+.|++++|++++ .+|..++.+++|++|+|++|++++.
T Consensus 451 ------------------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 451 ------------------------------------------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp ------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ------------------------------------------CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 899999999998 4788999999999999999999999
Q ss_pred CCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccC-ccCcccccCC-CcCCC
Q 046398 646 IPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQ-SFDASCFVGN-NLCGP 716 (794)
Q Consensus 646 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn-~lcg~ 716 (794)
.|..++++++|+.|+|++|++++.+|..+..+++|++|++++|+++ .+|.. ..+. .+....+.+| -.|..
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 9999999999999999999999999999999999999999999999 56654 3332 3566678888 44543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-50 Score=481.90 Aligned_cols=527 Identities=22% Similarity=0.203 Sum_probs=414.2
Q ss_pred hccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCC-cccccCCccccccccCccc
Q 046398 99 DYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGII-PHQLGNLSNLRCLDLSWSE 177 (794)
Q Consensus 99 ~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~~~ 177 (794)
+.+..+++. +|. -.++|++|||++|.+++. .|..|..+++|++|+|++|...+.+ |..|+++++|++|+|++|.
T Consensus 10 dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 10 FYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EESCCCSSC-CCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EccCCCCCC-CCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 334445554 343 457899999999999875 6788899999999999999665555 7789999999999998887
Q ss_pred cccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc--ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEE
Q 046398 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW--LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID 255 (794)
Q Consensus 178 ~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 255 (794)
+ .+..|..|.++++|++|+|++|.+++..+.. +.++++|++|++++|.+++..+...++++++|++|+
T Consensus 85 l----------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 85 I----------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp C----------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred C----------cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 4 3456888999999999999999998866554 888999999999999988766544788999999999
Q ss_pred ccCCCCCCCCCchhhhcc--CCCCEEEccCCCCCcchHHHHHhhhh-cCcCCccEEEeecccccccccccccCC---CCC
Q 046398 256 LSLNFELGGPIPTSFVRL--CELTSIDVSDVKLSQDLSQVLDILSA-CGASALESLVFSSSQISGHLTSQLGQF---KSL 329 (794)
Q Consensus 256 L~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~~~~~~l~~l~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~L 329 (794)
++ ++.+.+..+..+..+ ++|+.|+++.|.+.+..+..+..+.. .....|++|++++|.+++..+..+... +++
T Consensus 155 Ls-~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 155 FS-SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EE-SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred CC-CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 98 677888888888777 88999999998888766544332220 011248889999988887777665543 567
Q ss_pred CEEEccCCc---------CcCCCCCCcCCC--CCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcC
Q 046398 330 RTLSLDDNC---------ISGPLPPALGDL--SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVN 398 (794)
Q Consensus 330 ~~L~L~~n~---------l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 398 (794)
+.+.++.+. +.+..+..+.++ ++|++|++++|.+.+..|..+..+++|+.|++++|++.+..+. .|..
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~ 312 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYG 312 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcC
Confidence 788876432 222223344443 6899999999999888888888899999999999999855444 7888
Q ss_pred CCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceec
Q 046398 399 LTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI 478 (794)
Q Consensus 399 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~ 478 (794)
+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------- 376 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT---------------- 376 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----------------
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----------------
Confidence 9999999999999888878888888899999999998888878888889999999999998775
Q ss_pred cCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccC-CccccCCCCCCEEEccCCcCcccCCch-h
Q 046398 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL-PIQLCRLTSLQILDVANNSLSGTMPGC-V 556 (794)
Q Consensus 479 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~ 556 (794)
+ ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|++|++++|++++..+.. +
T Consensus 377 i----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 377 I----HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp C----SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred c----cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 2 23678899999999987 67653 567889999999988643 234568889999999999887543321 1
Q ss_pred hccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccc-----cccChhhhcccC
Q 046398 557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS-----GEIPMELTYLRG 631 (794)
Q Consensus 557 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~~ip~~l~~l~~ 631 (794)
. .+++|+.|++++|.++ +..+..+..+++
T Consensus 448 ~----------------------------------------------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 448 S----------------------------------------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp C----------------------------------------------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred c----------------------------------------------cCCccccccCCCCccccccccccchhhhcCccc
Confidence 1 1345688999999997 455567889999
Q ss_pred CCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC
Q 046398 632 LQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN 711 (794)
Q Consensus 632 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn 711 (794)
|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|+++|.+|.. +..+....+.||
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N 557 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN 557 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC
Confidence 99999999999999999999999999999999999998887776 89999999999999999964 567777788899
Q ss_pred -CcCCCC
Q 046398 712 -NLCGPP 717 (794)
Q Consensus 712 -~lcg~~ 717 (794)
-.|..+
T Consensus 558 p~~C~c~ 564 (844)
T 3j0a_A 558 KFICECE 564 (844)
T ss_dssp CCCCSSS
T ss_pred Ccccccc
Confidence 566543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-48 Score=442.56 Aligned_cols=501 Identities=20% Similarity=0.195 Sum_probs=395.0
Q ss_pred ecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccc
Q 046398 109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWL 188 (794)
Q Consensus 109 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 188 (794)
+|..+. +++++|+|++|.++++ .+..|..+++|++|+|++|++++..|..|+++++|++|++++|.+.
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~--------- 89 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--------- 89 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------
T ss_pred cCCCcc--ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC---------
Confidence 444443 5789999999998865 4667888999999999999998877888899999999999888743
Q ss_pred ccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCC-CCCccccCCCCCCcEEEccCCCCCCCCCc
Q 046398 189 SGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG-TISSIGLENLTSIKTIDLSLNFELGGPIP 267 (794)
Q Consensus 189 ~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~~~~~~~~~~ 267 (794)
+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|. .++++++|++|+++ ++.+.+..+
T Consensus 90 -~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~-~n~l~~~~~ 166 (570)
T 2z63_A 90 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLS-SNKIQSIYC 166 (570)
T ss_dssp -EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECT-TSCCCEECG
T ss_pred -ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCc-CCccceecH
Confidence 3445788889999999999999888877678899999999999998876 4566 78888999999998 667777777
Q ss_pred hhhhccCCC----CEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccc-cccccccCCCCCCEEEccCCcCc--
Q 046398 268 TSFVRLCEL----TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG-HLTSQLGQFKSLRTLSLDDNCIS-- 340 (794)
Q Consensus 268 ~~l~~l~~L----~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~-- 340 (794)
..+..+++| +.+++++|.+.+..+..+... +|++|++++|.... ..+..+..+++++.+.+....+.
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~------~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC------cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 788888887 788888888887666554322 68888888874332 23445566666666555432221
Q ss_pred ----CCCCCCcCCCC--CCCEEEccCC-cccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398 341 ----GPLPPALGDLS--SLTRLDLSRN-MLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413 (794)
Q Consensus 341 ----~~~p~~l~~l~--~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~ 413 (794)
......+..++ .++.++++++ .+.+..|..+..+++|++|++++|.+. .+|. .+..+ +|+.|++++|.+.
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB-CCSCC-CCSEEEEESCBCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh-hhccC-CccEEeeccCccc
Confidence 11112222222 3566677776 667777888888888888888888887 5665 45566 8888888888876
Q ss_pred eEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEE
Q 046398 414 LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN 493 (794)
Q Consensus 414 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~ 493 (794)
.++. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. ..|..+..+++|++|+
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~-------------~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG-------------CCSQSDFGTTSLKYLD 379 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE-------------EEEHHHHTCSCCCEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc-------------cccccccccCccCEEE
Confidence 2332 3567888899988888776665 67899999999999887521 2355677889999999
Q ss_pred ccCCcccccCChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCC
Q 046398 494 LGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSN 572 (794)
Q Consensus 494 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 572 (794)
+++|++++ +|..+. .+++|+.|++++|++.+..| ..+..+++|++|++++|++.+..|..+.++++|
T Consensus 380 l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------- 447 (570)
T 2z63_A 380 LSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------- 447 (570)
T ss_dssp CCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----------
T ss_pred CCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC----------
Confidence 99999984 555444 78999999999999998766 578899999999999999998888777665555
Q ss_pred CcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccc-cccChhhhcccCCCEEecccccccccCCcccc
Q 046398 573 AMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS-GEIPMELTYLRGLQSLNLSHNIFTGQIPENIG 651 (794)
Q Consensus 573 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 651 (794)
+.|++++|+++ +.+|..+..+++|++|+|++|++++..|..++
T Consensus 448 ------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 448 ------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp ------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ------------------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 88999999998 68999999999999999999999988899999
Q ss_pred ccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCCc
Q 046398 652 NLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQ 699 (794)
Q Consensus 652 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 699 (794)
++++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|....
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 999999999999999999999999999999999999999999997543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-48 Score=445.89 Aligned_cols=481 Identities=19% Similarity=0.243 Sum_probs=361.6
Q ss_pred eecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccc
Q 046398 108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSW 187 (794)
Q Consensus 108 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~ 187 (794)
.+|+.+. ++|++|+|++|++++. .|..|+.+++|++|++++|++++..|+.|+++++|++|++++|.+.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-------- 87 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-------- 87 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--------
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC--------
Confidence 3454443 7899999999999875 5788999999999999999999888889999999999999988743
Q ss_pred cccCCCCccCCCCCCCEEECcCCCCCCC-CCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC
Q 046398 188 LSGQIPNRLGNLTSLRHLDLSANKFNST-TAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI 266 (794)
Q Consensus 188 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~ 266 (794)
+..|..++++++|++|++++|.+++. .+..+.++++|++|++++|.+.+.++...+.++++|++|+++ ++.+.+..
T Consensus 88 --~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~ 164 (549)
T 2z81_A 88 --SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQ 164 (549)
T ss_dssp --SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEEC
T ss_pred --ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-CCcccccC
Confidence 44455689999999999999999874 567789999999999999986667776688999999999999 67788888
Q ss_pred chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccc---cccccCCCCCCEEEccCCcCcCCC
Q 046398 267 PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL---TSQLGQFKSLRTLSLDDNCISGPL 343 (794)
Q Consensus 267 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~ 343 (794)
|..+..+++|+.|+++.|.+.......+..++ +|++|++++|++++.. ......+++|+.|++++|.+++..
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILS-----SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT-----TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcc-----cccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 88999999999999988887543332223333 7888888888777642 112234566777777777665432
Q ss_pred C----CCcCCCCCCCEEEccCCcccccC------CccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398 344 P----PALGDLSSLTRLDLSRNMLNGSI------PLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413 (794)
Q Consensus 344 p----~~l~~l~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~ 413 (794)
+ ..+..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+.... .+..+
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~---~~~~l-------------- 302 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY---LFYDL-------------- 302 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG---GSCCC--------------
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh---hcccc--------------
Confidence 2 22345566777777776665421 112344555666666555543110 00000
Q ss_pred eEcCCCCcCccccceEecccccCCCCCCccc-CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEE
Q 046398 414 LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL-HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL 492 (794)
Q Consensus 414 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L 492 (794)
+..+....+|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|.. +..+..+++|++|
T Consensus 303 ---~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------~~~~~~l~~L~~L 366 (549)
T 2z81_A 303 ---STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN------------SACKGAWPSLQTL 366 (549)
T ss_dssp ---CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH------------HTCTTSSTTCCEE
T ss_pred ---hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc------------hhhhhccccCcEE
Confidence 000112346777777777765 455554 57899999999999988744321 2346788999999
Q ss_pred EccCCcccccCCh--hhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccC
Q 046398 493 NLGDNEFVGKIPT--WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQ 570 (794)
Q Consensus 493 ~Ls~n~l~~~ip~--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 570 (794)
++++|++++ ++. .....+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+
T Consensus 367 ~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-------------- 429 (549)
T 2z81_A 367 VLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-------------- 429 (549)
T ss_dssp ECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--------------
T ss_pred EccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--------------
Confidence 999999974 442 23347999999999999998 678889999999999999999873 33221
Q ss_pred CCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccc
Q 046398 571 SNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI 650 (794)
Q Consensus 571 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 650 (794)
.+.|+.||+++|++++.+ ..+++|++|+|++|+++ .+|+ .
T Consensus 430 ----------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 430 ----------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp ----------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred ----------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 134589999999999753 57899999999999999 7887 5
Q ss_pred cccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC
Q 046398 651 GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS 697 (794)
Q Consensus 651 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 697 (794)
+.+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 78999999999999999999999999999999999999999998853
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-47 Score=438.41 Aligned_cols=490 Identities=20% Similarity=0.202 Sum_probs=403.1
Q ss_pred cchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccc
Q 046398 93 ATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172 (794)
Q Consensus 93 ~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 172 (794)
..+..+++..+.+++..+..|.++++|++|+|++|+++++ .|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 3456678888999988888999999999999999999965 567899999999999999999988889999999999999
Q ss_pred cCccccccccccccccccCCC-CccCCCCCCCEEECcCCCCCCC-CCccccCCCCCCeEeeeccCCCCCCCccccCCCCC
Q 046398 173 LSWSEYALQVHSFSWLSGQIP-NRLGNLTSLRHLDLSANKFNST-TAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS 250 (794)
Q Consensus 173 Ls~~~~~~~~~~~~~~~~~lp-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~ 250 (794)
+++|.+. .+| ..++++++|++|++++|.+++. .|..++++++|++|++++|.+++..+. .++.+++
T Consensus 107 L~~n~l~-----------~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 174 (570)
T 2z63_A 107 AVETNLA-----------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQ 174 (570)
T ss_dssp CTTSCCC-----------CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG-GGHHHHT
T ss_pred ccccccc-----------cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH-Hccchhc
Confidence 9998854 344 3699999999999999999884 688999999999999999999855444 7777888
Q ss_pred C----cEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCc-chHHHHHhhhhcCcCCccEEEeeccccc------ccc
Q 046398 251 I----KTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ-DLSQVLDILSACGASALESLVFSSSQIS------GHL 319 (794)
Q Consensus 251 L----~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~l~------~~~ 319 (794)
| +.++++ ++.+.+..+..+... +|+.|++++|.... ..+..+..+. .++...+....+. ...
T Consensus 175 L~~~~~~L~l~-~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~-----~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 175 MPLLNLSLDLS-LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA-----GLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp CTTCCCEEECT-TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT-----TCEEEEEEEEECCCCSSCEECC
T ss_pred cchhhhhcccC-CCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc-----ccceeeeccccccCchhhhhcc
Confidence 7 899999 677777777777665 89999999886543 3344455444 6665555433221 112
Q ss_pred cccccCCC--CCCEEEccCC-cCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhh
Q 046398 320 TSQLGQFK--SLRTLSLDDN-CISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF 396 (794)
Q Consensus 320 ~~~l~~l~--~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 396 (794)
...+..++ .++.++++++ .+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--- 321 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--- 321 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---
Confidence 22233332 3567777777 677778888888889999999999887 577778887 8999999999887 5554
Q ss_pred cCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCC--CcccCCCCCCCEEeccCCCCCCCcchhHHhcccc
Q 046398 397 VNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQF--PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQ 474 (794)
Q Consensus 397 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 474 (794)
..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------ 387 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------ 387 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE------------
T ss_pred ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc------------
Confidence 4778899999999887765544 56778999999999887654 6778889999999999998775
Q ss_pred ceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCc-ccCC
Q 046398 475 LSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS-GTMP 553 (794)
Q Consensus 475 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p 553 (794)
++..+..+++|++|++++|++.+..|...+..+++|++|++++|++.+..|..+..+++|++|++++|+++ +.+|
T Consensus 388 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p 463 (570)
T 2z63_A 388 ----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463 (570)
T ss_dssp ----EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ----ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch
Confidence 34448889999999999999997666444557999999999999999999999999999999999999997 5677
Q ss_pred chhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCC
Q 046398 554 GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ 633 (794)
Q Consensus 554 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 633 (794)
..+..+++| +.|++++|++++..|..+..+++|+
T Consensus 464 ~~~~~l~~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 464 DIFTELRNL----------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp SCCTTCTTC----------------------------------------------CEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhhhcccCC----------------------------------------------CEEECCCCccccCChhhhhcccCCC
Confidence 766665554 8999999999999899999999999
Q ss_pred EEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398 634 SLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ 672 (794)
Q Consensus 634 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 672 (794)
+|+|++|++++..|..+.++++|+.|++++|++++..|.
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999988888899999999999999999998764
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-46 Score=421.97 Aligned_cols=456 Identities=21% Similarity=0.214 Sum_probs=320.2
Q ss_pred CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCC
Q 046398 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL 199 (794)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l 199 (794)
++||+++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+ .+..|..|+++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----------~~~~~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI----------QYLDISVFKFN 68 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC----------CEEEGGGGTTC
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCcc----------CCcChHHhhcc
Confidence 46677777776 3566554 6777777777777666556666666666666665553 22335555666
Q ss_pred CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEE
Q 046398 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI 279 (794)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 279 (794)
++|++|++++|+++.. |.. .+++|++|++++|.+++. .+|..++++++|+.|
T Consensus 69 ~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~-------------------------~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 69 QELEYLDLSHNKLVKI-SCH--PTVNLKHLDLSFNAFDAL-------------------------PICKEFGNMSQLKFL 120 (520)
T ss_dssp TTCCEEECCSSCCCEE-ECC--CCCCCSEEECCSSCCSSC-------------------------CCCGGGGGCTTCCEE
T ss_pred cCCCEEecCCCceeec-Ccc--ccCCccEEeccCCccccc-------------------------cchhhhccCCcceEE
Confidence 6666666666665532 222 455555555555555431 223333334444444
Q ss_pred EccCCCCCcchHHHHHhhhhcCcCCc--cEEEeecccc--cccccccccCCC-CCCEEEccCCcCcCCCCC-CcCCCCCC
Q 046398 280 DVSDVKLSQDLSQVLDILSACGASAL--ESLVFSSSQI--SGHLTSQLGQFK-SLRTLSLDDNCISGPLPP-ALGDLSSL 353 (794)
Q Consensus 280 ~l~~~~l~~~~~~~l~~l~~~~~~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L 353 (794)
++++|.+++. .+..++ +| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++. .+..+++|
T Consensus 121 ~L~~n~l~~~---~~~~l~-----~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 121 GLSTTHLEKS---SVLPIA-----HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp EEEESSCCGG---GGGGGT-----TSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred EecCcccchh---hccccc-----cceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 4444444331 111122 44 6666666666 555666555544 233567777777665543 45678888
Q ss_pred CEEEccCCc-------ccccCCccccCCCCCCeEeccCcccccccChhhh--cCCCCCCEEECcCCcceeEcCCCC----
Q 046398 354 TRLDLSRNM-------LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF--VNLTKLTWFSASGNSLILQVNPNW---- 420 (794)
Q Consensus 354 ~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~---- 420 (794)
+.|++++|. +.+.+| .++.+++|+.|++++|.+.+....... ...++|+.|++++|.+.+.++..+
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 888888886 666665 678888888888888887653322111 124688888888888887777777
Q ss_pred -cCccccceEecccccCCCCCC-cccCCC---CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEcc
Q 046398 421 -VPPFQLKTLLLMSCHLGPQFP-SWLHSQ---KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLG 495 (794)
Q Consensus 421 -~~~~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls 495 (794)
..+..|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+. + ....+++|++|+++
T Consensus 272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~----------------~-~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM----------------L-CPSKISPFLHLDFS 332 (520)
T ss_dssp SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC----------------C-CCSSCCCCCEEECC
T ss_pred cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc----------------c-chhhCCcccEEEeE
Confidence 7788888999988887 455 344333 6799999999987652 1 12578899999999
Q ss_pred CCcccccCChhhhhcCCCCcEEEcccccccc--cCCccccCCCCCCEEEccCCcCcccCCch-hhccccccccccccCCC
Q 046398 496 DNEFVGKIPTWMGEGFTSLLILILRSNKFDG--FLPIQLCRLTSLQILDVANNSLSGTMPGC-VNNFSAMATIDSSHQSN 572 (794)
Q Consensus 496 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~ 572 (794)
+|++++.+|..+. .+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..
T Consensus 333 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~-------------- 397 (520)
T 2z7x_B 333 NNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW-------------- 397 (520)
T ss_dssp SSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------
T ss_pred CCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc--------------
Confidence 9999987888776 79999999999999987 56678999999999999999998756543 333
Q ss_pred CcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccc
Q 046398 573 AMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGN 652 (794)
Q Consensus 573 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 652 (794)
++.|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..
T Consensus 398 --------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 398 --------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp --------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred --------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 34458999999999988887765 79999999999999 89999999
Q ss_pred cCCCCEEeCCCCcCcccCcc-cccCCCCCCEEeCcCCcccccCCC
Q 046398 653 LISIESLDFSTNQLSSKISQ-SMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 653 l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
+++|+.|+|++|+++. +|. .+..+++|++|++++|++++..|.
T Consensus 443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999999996 555 499999999999999999987663
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-45 Score=418.37 Aligned_cols=485 Identities=22% Similarity=0.269 Sum_probs=349.3
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCcc
Q 046398 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL 196 (794)
Q Consensus 117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l 196 (794)
+...+.|.+++.++ .+|..+. ++|++|++++|++++..|..|+++++|++|++++|.+ .+..|..|
T Consensus 5 ~~~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----------~~~~~~~~ 70 (549)
T 2z81_A 5 DASGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI----------NTIEGDAF 70 (549)
T ss_dssp CTTSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC----------CEECTTTT
T ss_pred CCCceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc----------CccChhhc
Confidence 34445788899998 5788664 7999999999999988899999999999999999874 44556889
Q ss_pred CCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC-CCccccCCCCCCcEEEccCCCCCCCCC-chhhhccC
Q 046398 197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT-ISSIGLENLTSIKTIDLSLNFELGGPI-PTSFVRLC 274 (794)
Q Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~ 274 (794)
.++++|++|++++|.+++..+..++++++|++|++++|.+++. ++. .++++++|++|+++ ++...+.+ +..+.+++
T Consensus 71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~-~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIG-NVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEE-ESSSCCEECTTTTTTCC
T ss_pred cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECC-CCccccccCHhhhhccc
Confidence 9999999999999999999998899999999999999999853 344 78899999999998 44433344 35677788
Q ss_pred CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCC--C-CCcCCCC
Q 046398 275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPL--P-PALGDLS 351 (794)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~ 351 (794)
+|+.|++++|.+++..|..+..++ +|++|++++|.+.......+..+++|++|++++|.+++.. | .....++
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~-----~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIR-----DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCS-----EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred ccCeeeccCCcccccChhhhhccc-----cCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 788888877777776666655544 6777777777665443333455677777777777776532 1 1123456
Q ss_pred CCCEEEccCCcccccCC----ccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccc
Q 046398 352 SLTRLDLSRNMLNGSIP----LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLK 427 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~ 427 (794)
+|++|++++|.+++..+ ..+..+++|+.+++++|.+.+.... . . .....+....+++
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-~-----~-------------~~~~~~~~l~~L~ 284 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-N-----P-------------SESDVVSELGKVE 284 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-C-----C-------------CTTTCCCCCTTCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-c-----c-------------cchhhhhhhcccc
Confidence 67777777776654332 2334556666666666665532110 0 0 0001122334455
Q ss_pred eEecccccCCCC-----CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCccc-CCCCCCCEEEccCCcccc
Q 046398 428 TLLLMSCHLGPQ-----FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF-KNFSNLEVLNLGDNEFVG 501 (794)
Q Consensus 428 ~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~ 501 (794)
.+.+.++.+... ++..+....+|+.|++++|++.. +|..+ ..+++|++|++++|++++
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~----------------ip~~~~~~l~~L~~L~Ls~N~l~~ 348 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL----------------VPCSFSQHLKSLEFLDLSENLMVE 348 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC----------------CCHHHHHHCTTCCEEECCSSCCCH
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCcccc----------------CCHHHHhcCccccEEEccCCcccc
Confidence 555555443321 12223345678999999998764 44443 367889999999999887
Q ss_pred cCChhh--hhcCCCCcEEEcccccccccCC--ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccc
Q 046398 502 KIPTWM--GEGFTSLLILILRSNKFDGFLP--IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYF 577 (794)
Q Consensus 502 ~ip~~~--~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 577 (794)
.+|... ...+++|+.|++++|++++..+ ..+..+++|++||+++|+++ .+|..+..+
T Consensus 349 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~------------------ 409 (549)
T 2z81_A 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP------------------ 409 (549)
T ss_dssp HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC------------------
T ss_pred ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc------------------
Confidence 665321 2367889999999999886532 45788899999999999887 556554443
Q ss_pred cccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCC
Q 046398 578 EVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIE 657 (794)
Q Consensus 578 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 657 (794)
+.|++|++++|+++ .+|..+ .++|++|+|++|++++.+ ..+++|+
T Consensus 410 ----------------------------~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 410 ----------------------------EKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp ----------------------------TTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred ----------------------------ccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhc
Confidence 34489999999998 455444 368999999999999643 5789999
Q ss_pred EEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCc
Q 046398 658 SLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNL 713 (794)
Q Consensus 658 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~l 713 (794)
+|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+....+.+|.+
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 9999999998 5776 578999999999999999988863 5667777777888843
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-44 Score=421.71 Aligned_cols=369 Identities=17% Similarity=0.227 Sum_probs=299.1
Q ss_pred CCCCeEeeec--cCCCCCCCccccCCCCCCcEEEccCCCCCCC-----------------CCchhhh--ccCCCCEEEcc
Q 046398 224 NHLEFLSLSS--NGLQGTISSIGLENLTSIKTIDLSLNFELGG-----------------PIPTSFV--RLCELTSIDVS 282 (794)
Q Consensus 224 ~~L~~L~L~~--n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~ 282 (794)
..++.+.+.. |.+++ +|. .++++++|++|+|+ ++.+++ .+|..++ ++++|+.|+++
T Consensus 423 l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cchhhceeccccCcccc-hhH-HHhcCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 3444454544 78887 888 89999999999999 677888 3899877 99999999999
Q ss_pred CCCCCcchHHHHHhhhhcCcCCccEEEeeccc-ccc-cccccccCC-------CCCCEEEccCCcCcCCCCC--CcCCCC
Q 046398 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQ-ISG-HLTSQLGQF-------KSLRTLSLDDNCISGPLPP--ALGDLS 351 (794)
Q Consensus 283 ~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l-------~~L~~L~L~~n~l~~~~p~--~l~~l~ 351 (794)
+|.+.+.+|..+..++ +|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .+++++
T Consensus 500 ~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp SCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred CCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 9999999998888777 99999999998 998 788766555 49999999999999 7888 899999
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL 431 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 431 (794)
+|++|++++|.++ .+| .++.+++|++|++++|++. .+|.
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~-------------------------------------- 612 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE-------------------------------------- 612 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT--------------------------------------
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH--------------------------------------
Confidence 9999999999999 888 8999999999999999887 4443
Q ss_pred ccccCCCCCCcccCCCCC-CCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC--CCCEEEccCCcccccCChhh-
Q 046398 432 MSCHLGPQFPSWLHSQKN-LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS--NLEVLNLGDNEFVGKIPTWM- 507 (794)
Q Consensus 432 ~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~ip~~~- 507 (794)
.+..+++ |+.|++++|+++. +|..+..++ +|+.|++++|++++.+|...
T Consensus 613 -----------~l~~l~~~L~~L~Ls~N~L~~----------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 613 -----------DFCAFTDQVEGLGFSHNKLKY----------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp -----------TSCEECTTCCEEECCSSCCCS----------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred -----------HHhhccccCCEEECcCCCCCc----------------CchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 2333445 6666666666652 444555544 49999999999998766422
Q ss_pred --h-hcCCCCcEEEcccccccccCCcc-ccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccc
Q 046398 508 --G-EGFTSLLILILRSNKFDGFLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD 583 (794)
Q Consensus 508 --~-~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 583 (794)
. -.+++|+.|+|++|+++. +|.. +..+++|+.|+|++|+++ .+|..+.....
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~---------------------- 721 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKD---------------------- 721 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT----------------------
T ss_pred hhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc----------------------
Confidence 1 024589999999999994 5554 458999999999999999 66654332110
Q ss_pred cccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhh--cccCCCEEecccccccccCCccccccCCCCEEeC
Q 046398 584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT--YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDF 661 (794)
Q Consensus 584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 661 (794)
.....++.|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++++++|+.|+|
T Consensus 722 ----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 722 ----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp ----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred ----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence 00112446799999999999 8899987 99999999999999996 8999999999999999
Q ss_pred CC------CcCcccCcccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCCCc
Q 046398 662 ST------NQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNL 713 (794)
Q Consensus 662 s~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~l 713 (794)
++ |++.+.+|..+..+++|+.|+|++|++ +.||.. ....+....+.+|.+
T Consensus 784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred CCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence 77 889999999999999999999999999 899986 235666666777744
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.8e-44 Score=414.73 Aligned_cols=515 Identities=20% Similarity=0.189 Sum_probs=291.4
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccC
Q 046398 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197 (794)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~ 197 (794)
++++|||++|+|+.+ .+..|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++. +..+..|.
T Consensus 53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~----------~l~~~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----------SLALGAFS 121 (635)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----------EECGGGGT
T ss_pred CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC----------CCCHHHhc
Confidence 567777777777743 3456777777777777777777666666777777777777776643 22234567
Q ss_pred CCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC-CCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCC
Q 046398 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT-ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL 276 (794)
Q Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L 276 (794)
++++|++|++++|++++..+..|+++++|++|++++|.+++. +|. .+..+++|++|+++ ++.+.+..+..+..+.++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~-~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECC-SSCCCEECGGGGHHHHTC
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhccc-Cccccccccccccchhhh
Confidence 777777777777777777666677777777777777777643 333 56677777777777 556666666666554443
Q ss_pred ----CEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc-ccccccCCCCCCEEEccCCcC------cCCCCC
Q 046398 277 ----TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH-LTSQLGQFKSLRTLSLDDNCI------SGPLPP 345 (794)
Q Consensus 277 ----~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l------~~~~p~ 345 (794)
..++++.|.+....+..+... .++.+++.+|..... .+..+..++.++...+..+.. ......
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~------~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred hhhhhhhhcccCcccccCcccccch------hhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 356666666655443332221 345566665544321 223344455555444432211 111112
Q ss_pred CcCCCCCCCEEEccCCccc---ccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcC
Q 046398 346 ALGDLSSLTRLDLSRNMLN---GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422 (794)
Q Consensus 346 ~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 422 (794)
.+.....+...++..+... ...+..+..+.+++.+++.++.+.. +. .+.....|+.|++.+|.+..... ..
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~---~~ 347 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK--DFSYNFGWQHLELVNCKFGQFPT---LK 347 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG--GGGSCCCCSEEEEESCEESSCCC---CB
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-cc--ccccchhhhhhhcccccccCcCc---cc
Confidence 2222333333333322211 1122233344455555555555442 11 23344455555555554432221 12
Q ss_pred ccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccccc
Q 046398 423 PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGK 502 (794)
Q Consensus 423 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 502 (794)
...|+.+.+.+|....... ...+++|+.+++++|.+... +..+..+..+.+|+.+++..|.+.+
T Consensus 348 l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~-------------~~~~~~~~~~~~L~~L~~~~~~~~~- 411 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK-------------GCCSQSDFGTISLKYLDLSFNGVIT- 411 (635)
T ss_dssp CTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEE-------------EECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred chhhhhcccccccCCCCcc--cccccccccchhhccccccc-------------cccccchhhhhhhhhhhcccccccc-
Confidence 3345555555544432221 23445555555555554321 1222333344445555555444432
Q ss_pred CChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccc
Q 046398 503 IPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTA 581 (794)
Q Consensus 503 ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 581 (794)
++..+. .+++|+.+++++|+.....+ ..+..+++++.+++++|.+.+..+..+..++.++.++...+...
T Consensus 412 ~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~-------- 482 (635)
T 4g8a_A 412 MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ-------- 482 (635)
T ss_dssp ECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG--------
T ss_pred cccccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc--------
Confidence 222222 34445555554444433322 23444445555555555554444444444444444332221100
Q ss_pred cccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeC
Q 046398 582 YDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDF 661 (794)
Q Consensus 582 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 661 (794)
.+..+.....+++|++|||++|++++..|..|+++++|++|+|++|+|++..|..|+++++|++|||
T Consensus 483 -------------~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 483 -------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp -------------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred -------------cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 0001112233556699999999999999999999999999999999999888889999999999999
Q ss_pred CCCcCcccCcccccCC-CCCCEEeCcCCcccccCC
Q 046398 662 STNQLSSKISQSMSSL-SFLNHLNVSNNLLTGKIP 695 (794)
Q Consensus 662 s~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP 695 (794)
++|++++.+|+.+..+ ++|++|++++|++++...
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999988 689999999999987643
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=415.23 Aligned_cols=451 Identities=21% Similarity=0.226 Sum_probs=330.4
Q ss_pred cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV 182 (794)
Q Consensus 103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 182 (794)
+.++ .+|..+. ++|++|+|++|.+++. .|..|..+++|++|+|++|++++..|+.|+++++|++|++++|.+.
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 82 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--- 82 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---
T ss_pred CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---
Confidence 4666 4677666 8999999999999975 5678999999999999999999888999999999999999999865
Q ss_pred ccccccccCCCCccCCCCCCCEEECcCCCCCC-CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCC--cEEEccCC
Q 046398 183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSI--KTIDLSLN 259 (794)
Q Consensus 183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L--~~L~L~~~ 259 (794)
.+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+++. .+..+++| ++|+++ .
T Consensus 83 --------~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~-~ 147 (520)
T 2z7x_B 83 --------KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLV-L 147 (520)
T ss_dssp --------EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEE-E
T ss_pred --------ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEee-c
Confidence 56766 89999999999999998 4688999999999999999998752 56777777 999998 5
Q ss_pred CCC--CCCCchhhhccC-CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccc-------ccccccccccCCCCC
Q 046398 260 FEL--GGPIPTSFVRLC-ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ-------ISGHLTSQLGQFKSL 329 (794)
Q Consensus 260 ~~~--~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-------l~~~~~~~l~~l~~L 329 (794)
+.+ .+..|..+..+. +...+++++|.+.+.++.. ....+++|+.+++++|. +.+.++ .++.+++|
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L 222 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV----SVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKL 222 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC----CCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTC
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhh----hhhcccceeeccccccccccccceeecchh-hhccccch
Confidence 566 667777776655 2334566666655433221 11123366666666665 454444 55666666
Q ss_pred CEEEccCCcCcCCCCCCcC---CCCCCCEEEccCCcccccCCccc-----cCCCCCCeEeccCcccccccChhhhcCCCC
Q 046398 330 RTLSLDDNCISGPLPPALG---DLSSLTRLDLSRNMLNGSIPLSL-----GKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401 (794)
Q Consensus 330 ~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 401 (794)
+.|++++|.+++..+..+. ..++|++|++++|.+++.+|..+ +.+++|+.+++++|.+ .+|...+..+
T Consensus 223 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~-- 298 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI-- 298 (520)
T ss_dssp CEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH--
T ss_pred hhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc--
Confidence 6666666655532211110 12466666666666666666655 5666666666666665 3442222222
Q ss_pred CCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCc
Q 046398 402 LTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPE 481 (794)
Q Consensus 402 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~ 481 (794)
....+|+.|++++|.+.... ....+++|++|++++|++++. +|.
T Consensus 299 -------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~---------------~~~ 342 (520)
T 2z7x_B 299 -------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT---------------VFE 342 (520)
T ss_dssp -------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT---------------TTT
T ss_pred -------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh---------------hhh
Confidence 00123444444444443221 125678889999999988763 556
Q ss_pred ccCCCCCCCEEEccCCcccc--cCChhhhhcCCCCcEEEcccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhc
Q 046398 482 SFKNFSNLEVLNLGDNEFVG--KIPTWMGEGFTSLLILILRSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNN 558 (794)
Q Consensus 482 ~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 558 (794)
.+..+++|++|++++|++++ .+|..+. .+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+.
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred hhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence 67888999999999999885 4455554 689999999999999985665 478899999999999999876664431
Q ss_pred cccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecc
Q 046398 559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLS 638 (794)
Q Consensus 559 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls 638 (794)
+.|+.||+++|+++ .+|..+..+++|++|+|+
T Consensus 421 -----------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 421 -----------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp -----------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred -----------------------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 23589999999999 889988899999999999
Q ss_pred cccccccCCcc-ccccCCCCEEeCCCCcCcccCc
Q 046398 639 HNIFTGQIPEN-IGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 639 ~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
+|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 453 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 453 SNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999 67765 9999999999999999998654
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-44 Score=418.09 Aligned_cols=458 Identities=15% Similarity=0.190 Sum_probs=350.5
Q ss_pred ccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCC------CC------CCCccccCCCCCCeEeeec
Q 046398 166 SNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF------NS------TTAGWLSKFNHLEFLSLSS 233 (794)
Q Consensus 166 ~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l------~~------~~~~~l~~l~~L~~L~L~~ 233 (794)
.+++.|+|+++. +.|.+|..++++++|++|+|++|.+ .+ .+|... +.+|+ +++++
T Consensus 81 ~~V~~L~L~~~~----------l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~ 147 (636)
T 4eco_A 81 GRVTGLSLEGFG----------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQK 147 (636)
T ss_dssp CCEEEEECTTSC----------CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHH
T ss_pred CCEEEEEecCcc----------cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHH
Confidence 478889998777 5688999999999999999999965 22 222222 34566 77777
Q ss_pred cCCCCCCCccccCC-CCCCcEEEccCCCCCCCCCchhhhccCCCCEEEcc--CCCCCcchHHHHHhhhhcCcCCccEEEe
Q 046398 234 NGLQGTISSIGLEN-LTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS--DVKLSQDLSQVLDILSACGASALESLVF 310 (794)
Q Consensus 234 n~l~~~i~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~--~~~l~~~~~~~l~~l~~~~~~~L~~L~L 310 (794)
|.+.+.++. .+.. +..+..+++.. ..+. ......++.+.+. .|++++ +|..+..++ +|++|++
T Consensus 148 ~~l~~~~~~-~~~~~~~~l~~~~l~~-~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~-----~L~~L~L 213 (636)
T 4eco_A 148 TFVDYDPRE-DFSDLIKDCINSDPQQ-KSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLT-----KLRQFYM 213 (636)
T ss_dssp HHTCCCGGG-GSCHHHHHHHHHCTTS-CCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT-----TCCEEEE
T ss_pred hhhccCchh-hHHHHHHHHhhcCccc-cccc------cccccchhhhhhccccCCCcc-CCHHHhccc-----CCCEEEC
Confidence 777766655 3321 11111111110 0000 0001112222221 345555 555555554 6777777
Q ss_pred eccccccc-----------------cccccc--CCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCc-ccc-cCCc
Q 046398 311 SSSQISGH-----------------LTSQLG--QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM-LNG-SIPL 369 (794)
Q Consensus 311 ~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~ 369 (794)
++|.+++. +|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|.
T Consensus 214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence 77777664 888888 99999999999999999999999999999999999998 888 7888
Q ss_pred cccCC------CCCCeEeccCcccccccCh-hhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCc
Q 046398 370 SLGKI------SHLEYLDLSNNKMNGTLSE-IHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPS 442 (794)
Q Consensus 370 ~l~~l------~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 442 (794)
.++.+ ++|++|++++|+++ .+|. ..+.++++|+.|++++|.+.+.++ .+..+++|++|++++|.+. .+|.
T Consensus 294 ~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~ 370 (636)
T 4eco_A 294 DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA 370 (636)
T ss_dssp HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT
T ss_pred HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccH
Confidence 88776 89999999999998 6775 468899999999999999998888 8888899999999999988 7888
Q ss_pred ccCCCCC-CCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC--CCCEEEccCCcccccCChhhhh------cCCC
Q 046398 443 WLHSQKN-LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS--NLEVLNLGDNEFVGKIPTWMGE------GFTS 513 (794)
Q Consensus 443 ~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~ip~~~~~------~l~~ 513 (794)
.+..+++ |++|++++|+++. +|..+..++ +|++|++++|++++.+|..+.. .+++
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~~----------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLKY----------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp TSEEECTTCCEEECCSSCCSS----------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred hhhhhcccCcEEEccCCcCcc----------------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 8999999 9999999999884 555565544 8999999999999888876541 3679
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEE
Q 046398 514 LLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV 593 (794)
Q Consensus 514 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 593 (794)
|+.|++++|++++..+..+..+++|++|++++|+++ .+|........
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-------------------------------- 481 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-------------------------------- 481 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT--------------------------------
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc--------------------------------
Confidence 999999999999554445667999999999999998 55543221100
Q ss_pred EeccchhhcccccceeEEEcCCCccccccChhhh--cccCCCEEecccccccccCCccccccCCCCEEeC------CCCc
Q 046398 594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT--YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDF------STNQ 665 (794)
Q Consensus 594 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~ 665 (794)
.....++.|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++|+
T Consensus 482 ------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 482 ------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp ------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred ------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 00112346799999999999 7898887 99999999999999997 9999999999999999 5688
Q ss_pred CcccCcccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCCC
Q 046398 666 LSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNN 712 (794)
Q Consensus 666 l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 712 (794)
+.+.+|..+..+++|++|++++|++ +.||..- ...+....+.+|.
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNP 598 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCT
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCC
Confidence 9999999999999999999999999 8899752 3566666777773
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-42 Score=394.89 Aligned_cols=461 Identities=20% Similarity=0.228 Sum_probs=311.2
Q ss_pred CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCc
Q 046398 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR 195 (794)
Q Consensus 116 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~ 195 (794)
+...+++++++|+++ .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|.+ .+..|..
T Consensus 30 ~~~~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l----------~~~~~~~ 95 (562)
T 3a79_B 30 NELESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI----------RSLDFHV 95 (562)
T ss_dssp ---CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC----------CEECTTT
T ss_pred cCCCcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC----------CcCCHHH
Confidence 334478888888887 3676553 6888888888888876667777777777777777663 3344666
Q ss_pred cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC-CCccccCCCCCCcEEEccCCCCCCCCCchhhhccC
Q 046398 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT-ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC 274 (794)
Q Consensus 196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 274 (794)
|.++++|++|++++|+++..... .+++|++|++++|.+++. +|. .++++++|++|+++ ++.+.+. .+..++
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~-~n~l~~~---~~~~l~ 167 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLS-AAKFRQL---DLLPVA 167 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEE-CSBCCTT---TTGGGT
T ss_pred hCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchH-hhcccCcccEEecC-CCccccC---chhhhh
Confidence 77777777777777777643332 566677777776666531 222 44455555555554 2233221 111111
Q ss_pred CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccc--cccccccccCCC--CCCEEEccCCcCcCCCCC-CcCC
Q 046398 275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQI--SGHLTSQLGQFK--SLRTLSLDDNCISGPLPP-ALGD 349 (794)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~-~l~~ 349 (794)
+| +|++|++++|.+ ++..|..+..++ .+ .+++++|.+.+.++. .+..
T Consensus 168 ~L---------------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~ 219 (562)
T 3a79_B 168 HL---------------------------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNA 219 (562)
T ss_dssp TS---------------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESS
T ss_pred hc---------------------------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccc
Confidence 11 226666666666 555555555443 22 456666666654443 3445
Q ss_pred CCCCCEEEccCCc-----ccccCCccccCCCCCCeEeccCcccccccChh--hhcCCCCCCEEECcCCcceeEcCCCC--
Q 046398 350 LSSLTRLDLSRNM-----LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI--HFVNLTKLTWFSASGNSLILQVNPNW-- 420 (794)
Q Consensus 350 l~~L~~L~Ls~n~-----l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~-- 420 (794)
+++|+.+++++|. +.+. ...+..+++|+.++++++.+.+..... .....++|+.|++++|.+.+.+|..+
T Consensus 220 l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 220 LGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred cceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 6777777777764 2222 234566777777777776655321110 11223477778888777776666655
Q ss_pred ---cCccccceEecccccCCCCCC-cccC---CCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEE
Q 046398 421 ---VPPFQLKTLLLMSCHLGPQFP-SWLH---SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN 493 (794)
Q Consensus 421 ---~~~~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~ 493 (794)
..+..|+.+++..+.+ .+| .++. ...+|+.|++++|.+... + ....+++|++|+
T Consensus 299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~----------------~-~~~~l~~L~~L~ 359 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM----------------V-CPPSPSSFTFLN 359 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC----------------C-CCSSCCCCCEEE
T ss_pred cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc----------------c-CccCCCCceEEE
Confidence 4444555555555554 334 2221 125789999999987641 1 125788999999
Q ss_pred ccCCcccccCChhhhhcCCCCcEEEccccccccc--CCccccCCCCCCEEEccCCcCcccCCch-hhccccccccccccC
Q 046398 494 LGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF--LPIQLCRLTSLQILDVANNSLSGTMPGC-VNNFSAMATIDSSHQ 570 (794)
Q Consensus 494 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~ 570 (794)
+++|++++.+|..+. .+++|+.|++++|++++. +|..+..+++|++|++++|++++.+|.. +..
T Consensus 360 l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------------ 426 (562)
T 3a79_B 360 FTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------------ 426 (562)
T ss_dssp CCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC------------
T ss_pred CCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC------------
Confidence 999999987887775 789999999999999873 3567889999999999999998756543 333
Q ss_pred CCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccc
Q 046398 571 SNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI 650 (794)
Q Consensus 571 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 650 (794)
++.|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+
T Consensus 427 ----------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 427 ----------------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred ----------------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence 33458999999999988887665 79999999999999 889888
Q ss_pred cccCCCCEEeCCCCcCcccCccc-ccCCCCCCEEeCcCCcccccCCCC
Q 046398 651 GNLISIESLDFSTNQLSSKISQS-MSSLSFLNHLNVSNNLLTGKIPSS 697 (794)
Q Consensus 651 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~~ 697 (794)
..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++++.+|..
T Consensus 470 ~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 470 THLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred cCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 899999999999999995 5555 999999999999999999987743
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.9e-40 Score=381.69 Aligned_cols=527 Identities=20% Similarity=0.194 Sum_probs=401.2
Q ss_pred EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCC
Q 046398 122 LDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTS 201 (794)
Q Consensus 122 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~ 201 (794)
.+-++-+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|+|++|.+. +..|..|.++++
T Consensus 36 ~~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----------~i~~~~f~~L~~ 101 (635)
T 4g8a_A 36 YQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSH 101 (635)
T ss_dssp EECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----------EECTTTTTTCTT
T ss_pred EECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----------CcChhHhcCCCC
Confidence 344445566 4677653 47999999999999877889999999999999999854 333567999999
Q ss_pred CCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCC-CCCchhhhccCCCCEEE
Q 046398 202 LRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELG-GPIPTSFVRLCELTSID 280 (794)
Q Consensus 202 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~ 280 (794)
|++|+|++|++++..+..|.++++|++|++++|.+++ ++...++++++|++|+++ +|.+. ...|..+..+++|+.|+
T Consensus 102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccc-cCccccCCCchhhccchhhhhhc
Confidence 9999999999999999999999999999999999985 454479999999999999 55554 46788999999999999
Q ss_pred ccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCC-CCCCcCCCCCCCEEEcc
Q 046398 281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP-LPPALGDLSSLTRLDLS 359 (794)
Q Consensus 281 l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls 359 (794)
+++|++++..+..+..+.... .....++++.|.++...+..+. ...++.+++.+|..... .+..+..+..++...+.
T Consensus 180 L~~N~l~~~~~~~l~~L~~l~-~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 180 LSSNKIQSIYCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp CCSSCCCEECGGGGHHHHTCT-TCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred ccCccccccccccccchhhhh-hhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 999999988887776665111 1345788999999876665544 34577888888765422 22345566777766664
Q ss_pred CCcc------cccCCccccCCCCCCeEeccCccccccc--ChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398 360 RNML------NGSIPLSLGKISHLEYLDLSNNKMNGTL--SEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL 431 (794)
Q Consensus 360 ~n~l------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 431 (794)
.+.. .......+..+..+...++..+...... ....+....+++.+++.++.+.... .+.....++.|++
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l 335 (635)
T 4g8a_A 258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLEL 335 (635)
T ss_dssp EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhc
Confidence 3332 2223334445556666666554432111 1124667788999999998876543 3455668999999
Q ss_pred ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccc--cCChhhhh
Q 046398 432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG--KIPTWMGE 509 (794)
Q Consensus 432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~ 509 (794)
.+|.+....+. .+..|+.+++.+|.+... .....+++|+.|++++|.+.. ..+....
T Consensus 336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~-----------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~- 394 (635)
T 4g8a_A 336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNA-----------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF- 394 (635)
T ss_dssp ESCEESSCCCC---BCTTCCEEEEESCCSCCB-----------------CCCCBCTTCCEEECCSSCCBEEEECCHHHH-
T ss_pred ccccccCcCcc---cchhhhhcccccccCCCC-----------------cccccccccccchhhccccccccccccchh-
Confidence 99988765543 457789999999987642 234578999999999998853 3455555
Q ss_pred cCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCC-chhhccccccccccccCCCCcccccccccccccce
Q 046398 510 GFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP-GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLE 588 (794)
Q Consensus 510 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 588 (794)
.+.+|+.+++..|..... +..+..+++|+.+++++|+.....+ ..+.+++.+..++...+..
T Consensus 395 ~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l---------------- 457 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---------------- 457 (635)
T ss_dssp SCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC----------------
T ss_pred hhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccccccccccccccc----------------
Confidence 688999999999998754 5578899999999999998876654 4566777776665443321
Q ss_pred eeEEEEeccchhhcccccceeEEEcCCCcc-ccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398 589 DASIVMKGSMVEYNSILNLVRIIDVSKNNF-SGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS 667 (794)
Q Consensus 589 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 667 (794)
.+........++.++.|++++|++ .+.+|..+..+++|++|+|++|++++.+|..|+++++|+.|+|++|+|+
T Consensus 458 ------~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 458 ------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp ------EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ------ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 112223344577889999999985 4567888999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCEEeCcCCcccccCCCC-Ccc-CccCcccccCCC
Q 046398 668 SKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQL-QSFDASCFVGNN 712 (794)
Q Consensus 668 ~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~-~~~~~~~~~gn~ 712 (794)
+..|..+..+++|++||+++|++++.+|.. ..+ .++....+.+|.
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999999999999999999999999998864 222 456666677883
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-41 Score=387.97 Aligned_cols=448 Identities=19% Similarity=0.215 Sum_probs=322.4
Q ss_pred ccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccc
Q 046398 104 MLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVH 183 (794)
Q Consensus 104 ~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~ 183 (794)
.+++ +|..+. ++|++|+|++|.+++. .|..|+.+++|++|+|++|++++..|+.|+++++|++|++++|.+.
T Consensus 42 ~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---- 113 (562)
T 3a79_B 42 NLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---- 113 (562)
T ss_dssp CCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC----
T ss_pred CCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC----
Confidence 5664 666554 8999999999999975 5678999999999999999999888999999999999999999865
Q ss_pred cccccccCCCCccCCCCCCCEEECcCCCCCCC-CCccccCCCCCCeEeeeccCCCCCCCccccCCCCCC--cEEEccCCC
Q 046398 184 SFSWLSGQIPNRLGNLTSLRHLDLSANKFNST-TAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSI--KTIDLSLNF 260 (794)
Q Consensus 184 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L--~~L~L~~~~ 260 (794)
.+|.. .+++|++|++++|++++. .|..++++++|++|++++|.+++. .+..+++| ++|+++ .+
T Consensus 114 -------~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~-~n 179 (562)
T 3a79_B 114 -------NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLD-LV 179 (562)
T ss_dssp -------EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEE-ES
T ss_pred -------ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEee-cc
Confidence 56766 899999999999999985 468899999999999999999853 45555555 999999 66
Q ss_pred CC--CCCCchhhhccC-CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccc-----ccccccccccCCCCCCEE
Q 046398 261 EL--GGPIPTSFVRLC-ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ-----ISGHLTSQLGQFKSLRTL 332 (794)
Q Consensus 261 ~~--~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L 332 (794)
.+ .+..|..+..+. ..-.++++.|.+.+.++.. ....+++|+.+++++|. +.+. ...+..+++|+.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L 254 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM----SVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNV 254 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE----EESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhh----cccccceEEEecccccccccchHHHH-HHHHhccCcceEE
Confidence 66 777777777654 1124566777666533221 11223367777777764 2221 2345566777777
Q ss_pred EccCCcCcCCC----CCCcCCCCCCCEEEccCCcccccCCccc-----cCCCCCCeEeccCcccccccChhhhcCCCCCC
Q 046398 333 SLDDNCISGPL----PPALGDLSSLTRLDLSRNMLNGSIPLSL-----GKISHLEYLDLSNNKMNGTLSEIHFVNLTKLT 403 (794)
Q Consensus 333 ~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 403 (794)
+++++.+.+.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+|...+..+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~---- 327 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV---- 327 (562)
T ss_dssp EEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH----
T ss_pred EecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh----
Confidence 77666554321 1111 22367777777777776666655 4445555555555544 3332222111
Q ss_pred EEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCccc
Q 046398 404 WFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF 483 (794)
Q Consensus 404 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l 483 (794)
....+|++|++++|.+.... ....+++|++|++++|++++. +|..+
T Consensus 328 -----------------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~---------------~~~~~ 373 (562)
T 3a79_B 328 -----------------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDS---------------VFQGC 373 (562)
T ss_dssp -----------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT---------------TTTTC
T ss_pred -----------------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccc---------------hhhhh
Confidence 00123444444444443221 125677888888888887763 55667
Q ss_pred CCCCCCCEEEccCCcccccCC---hhhhhcCCCCcEEEcccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhcc
Q 046398 484 KNFSNLEVLNLGDNEFVGKIP---TWMGEGFTSLLILILRSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNNF 559 (794)
Q Consensus 484 ~~l~~L~~L~Ls~n~l~~~ip---~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 559 (794)
..+++|++|++++|++++ ++ ..+. .+++|+.|++++|++++.+|. .+..+++|++|++++|++++.+|..+.
T Consensus 374 ~~l~~L~~L~L~~N~l~~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKN-FFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp CSCSSCCEEECCSSCCCB-TTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred cccCCCCEEECCCCCcCC-cccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 788899999999998874 43 3333 688999999999999884554 578889999999999999876554331
Q ss_pred ccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccc
Q 046398 560 SAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSH 639 (794)
Q Consensus 560 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 639 (794)
+.|+.||+++|+++ .+|..+..+++|++|+|++
T Consensus 450 ----------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 450 ----------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp ----------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred ----------------------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence 23589999999998 7888888999999999999
Q ss_pred ccccccCCcc-ccccCCCCEEeCCCCcCcccCc
Q 046398 640 NIFTGQIPEN-IGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 640 N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 483 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 483 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999 67766 9999999999999999998665
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-40 Score=367.48 Aligned_cols=407 Identities=24% Similarity=0.289 Sum_probs=206.0
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccccc
Q 046398 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG 190 (794)
Q Consensus 111 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~ 190 (794)
|.-.+.++|++|++++|.+. .+|+.++++++|++|++++|.+.|.+|..++++++|+.++++.|..
T Consensus 5 p~~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------ 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred ccccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence 44445689999999999994 5899999999999999999999999999999999999988876642
Q ss_pred CCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhh
Q 046398 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSF 270 (794)
Q Consensus 191 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l 270 (794)
.++++|++++|.+++... -.++|++|++++|.+++ +|. .+++|++|+++ ++.+.+ ++.
T Consensus 71 ---------~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~-~n~l~~-l~~-- 128 (454)
T 1jl5_A 71 ---------RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVD-NNNLKA-LSD-- 128 (454)
T ss_dssp ---------HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECC-SSCCSC-CCS--
T ss_pred ---------cCCCEEEecCCccccCCC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECC-CCccCc-ccC--
Confidence 468899999999887543 13688888888888875 553 13556666665 333332 110
Q ss_pred hccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCC
Q 046398 271 VRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350 (794)
Q Consensus 271 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 350 (794)
. .++|++|++++|++++ +| .++.+++|++|++++|++++ +|..+
T Consensus 129 --~----------------------------~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--- 172 (454)
T 1jl5_A 129 --L----------------------------PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--- 172 (454)
T ss_dssp --C----------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---
T ss_pred --C----------------------------CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---
Confidence 0 0156666666666665 44 46667777777777777764 44332
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEe
Q 046398 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL 430 (794)
Q Consensus 351 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 430 (794)
++|++|++++|.+++ +| .++.+++|++|++++|++++ +|. ..++|+.|++++|.+. .++ .+..+++|++|+
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~ 243 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIY 243 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEE
Confidence 467777777777764 44 46667777777777777663 332 1235566666666554 222 244445555555
Q ss_pred cccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhc
Q 046398 431 LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEG 510 (794)
Q Consensus 431 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 510 (794)
+++|.+.+ +|.. +++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .
T Consensus 244 l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~----------------l~~~---~~~L~~L~ls~N~l~~-l~~----~ 295 (454)
T 1jl5_A 244 ADNNLLKT-LPDL---PPSLEALNVRDNYLTD----------------LPEL---PQSLTFLDVSENIFSG-LSE----L 295 (454)
T ss_dssp CCSSCCSS-CCSC---CTTCCEEECCSSCCSC----------------CCCC---CTTCCEEECCSSCCSE-ESC----C
T ss_pred CCCCcCCc-cccc---ccccCEEECCCCcccc----------------cCcc---cCcCCEEECcCCccCc-ccC----c
Confidence 55555543 2221 2456666666665554 2221 2456666666666553 221 1
Q ss_pred CCCCcEEEcccccccccCCccccCC-CCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccccccee
Q 046398 511 FTSLLILILRSNKFDGFLPIQLCRL-TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED 589 (794)
Q Consensus 511 l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~ 589 (794)
.++|+.|++++|++++. + .+ ++|++|++++|++++ +|..
T Consensus 296 ~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------------- 335 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---------------------------------- 335 (454)
T ss_dssp CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----------------------------------
T ss_pred CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc----------------------------------
Confidence 24566666666665531 1 12 356666666666553 3321
Q ss_pred eEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccc--cCCccccccCCCCEEeCCCCcCc
Q 046398 590 ASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG--QIPENIGNLISIESLDFSTNQLS 667 (794)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~ 667 (794)
++.|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.+++++ +.|.+.
T Consensus 336 ---------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~ 388 (454)
T 1jl5_A 336 ---------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHL 388 (454)
T ss_dssp ---------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC--
T ss_pred ---------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccc
Confidence 122356666666665 3444 35566666666666665 455544432 234555
Q ss_pred ccCcccccCCCCCCEEeCcCCcccc--cCCC
Q 046398 668 SKISQSMSSLSFLNHLNVSNNLLTG--KIPS 696 (794)
Q Consensus 668 ~~~p~~l~~l~~L~~L~ls~N~l~g--~iP~ 696 (794)
+.+|.. +++|++|++++|+++| .||.
T Consensus 389 ~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 389 AEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp -------------------------------
T ss_pred cccccc---cCcCCEEECCCCcCCccccchh
Confidence 555542 3778889999999887 7775
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-40 Score=351.35 Aligned_cols=293 Identities=31% Similarity=0.527 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc--eeeeEecCCC--CcEEEEEcCCCCCccccccchhhhhcccccc
Q 046398 30 GCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCK--WAEVVCSNLT--GHVLQLSLRNPFRNDLRYATTEYEDYMRSML 105 (794)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l 105 (794)
.|.++|++||++||+++.+|. .+++|..+.+||. |.||+|+..+ ++|++|++++. .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~------------------~l 62 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------------NL 62 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------------CC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC------------------Cc
Confidence 599999999999999998876 7899987789998 9999998654 89999999984 78
Q ss_pred ce--eecccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398 106 SG--NVNPSLVDLKHLTHLDLSG-NDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV 182 (794)
Q Consensus 106 ~g--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 182 (794)
.| .+|+.+.++++|++|+|++ |.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|++++|.
T Consensus 63 ~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~----- 136 (313)
T 1ogq_A 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA----- 136 (313)
T ss_dssp SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-----
T ss_pred cCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-----
Confidence 88 8899999999999999995 888875 89999999999999999999998899999999999999998877
Q ss_pred ccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCC-CCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCC
Q 046398 183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN-HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFE 261 (794)
Q Consensus 183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~ 261 (794)
+.+.+|..+.++++|++|++++|++++..|..+..++ +|++|++++|.+++.+|. .+..++ |++|+++ ++.
T Consensus 137 -----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls-~N~ 208 (313)
T 1ogq_A 137 -----LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLS-RNM 208 (313)
T ss_dssp -----EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECC-SSE
T ss_pred -----cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECc-CCc
Confidence 4467788888888888888888888888888787777 788888877777655554 333333 4444443 222
Q ss_pred CCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC
Q 046398 262 LGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341 (794)
Q Consensus 262 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 341 (794)
+.+..|..+..++ +|++|++++|.+++.++. +..+++|++|++++|.+++
T Consensus 209 l~~~~~~~~~~l~-----------------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 209 LEGDASVLFGSDK-----------------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp EEECCGGGCCTTS-----------------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred ccCcCCHHHhcCC-----------------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 3322332222222 333333333333332222 3344455555555555544
Q ss_pred CCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcc
Q 046398 342 PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386 (794)
Q Consensus 342 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 386 (794)
.+|.++..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 44444444555555555555555444433 444445555554444
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-38 Score=356.12 Aligned_cols=381 Identities=18% Similarity=0.175 Sum_probs=238.9
Q ss_pred CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEE
Q 046398 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI 279 (794)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 279 (794)
++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|+++ ++.+.+..|..+.++++|+.|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-YNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT-TCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC-CCccCccChhhccCcccCCEE
Confidence 5677777777777777777777777777777777777666655567777777777777 556666667777777777777
Q ss_pred EccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCC-cCCCCCCCEEEc
Q 046398 280 DVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPA-LGDLSSLTRLDL 358 (794)
Q Consensus 280 ~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 358 (794)
++++|.+++..+.. ..+..+++|++|++++|.+++..|.. +.++++|++|++
T Consensus 109 ~L~~n~l~~~~~~~---------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 109 TLTQCNLDGAVLSG---------------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp ECTTSCCBTHHHHS---------------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred eCCCCCCCccccCc---------------------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 77777666543322 11334444455555555444443433 444455555555
Q ss_pred cCCcccccCCccccCC--CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccC
Q 046398 359 SRNMLNGSIPLSLGKI--SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHL 436 (794)
Q Consensus 359 s~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 436 (794)
++|.+++..+..+..+ .+|+.|++++|.+.+..+. .+.. .....+...++|++|++++|.+
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~-~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY-WLGW----------------EKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT-CTTH----------------HHHCCTTTTCEEEEEECTTSCC
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchh-hccc----------------cccccccccceeeeEecCCCcc
Confidence 5555544444444333 3455555555554421111 0000 0000000111222222222222
Q ss_pred CCCCCcccC---CCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhh-hcCC
Q 046398 437 GPQFPSWLH---SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG-EGFT 512 (794)
Q Consensus 437 ~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~~l~ 512 (794)
.+..|..+. ..++|+.|++++|.+.+.. +..+.+.+..+..+. ...+
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSS-----------------------------FGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-----------------------------TTCCSSCCCCTTTTGGGTTS
T ss_pred cccchhhhhccccccceeeEeeccccccccc-----------------------------cchhhhccCccccccccccc
Confidence 222221111 1134444444444433210 000111111111110 0246
Q ss_pred CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398 513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592 (794)
Q Consensus 513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 592 (794)
+|+.|++++|++.+..|..+..+++|++|++++|++++..|..+.++++|
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------ 325 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL------------------------------ 325 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------------
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC------------------------------
Confidence 78888888888888888888889999999999999988777777665554
Q ss_pred EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ 672 (794)
Q Consensus 593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 672 (794)
+.|++++|++++..|..++.+++|++|+|++|++++..|..+.++++|++|+|++|++++..+.
T Consensus 326 ----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 326 ----------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp ----------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 8889999999888888999999999999999999988899999999999999999999998888
Q ss_pred cccCCCCCCEEeCcCCcccccCCCCCcc
Q 046398 673 SMSSLSFLNHLNVSNNLLTGKIPSSTQL 700 (794)
Q Consensus 673 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 700 (794)
.+..+++|++|++++|++++.+|....+
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred HhccCCcccEEEccCCCcccCCCcchHH
Confidence 8899999999999999999999975444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.1e-39 Score=357.31 Aligned_cols=404 Identities=22% Similarity=0.279 Sum_probs=265.6
Q ss_pred CcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCC
Q 046398 135 PKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214 (794)
Q Consensus 135 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~ 214 (794)
|+.+ +.++|++|++++|.+ +.+|++++++++|++|++++|. +.|.+|..++++++|+.+++..|..
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~----------~~~~~p~~~~~l~~L~~l~l~~c~~-- 70 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSE----------WERNAPPGNGEQREMAVSRLRDCLD-- 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHH----------HHHTSCTTSCCCHHHHHHHHHHHHH--
T ss_pred cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCc----------ccccCCcccccchhcchhhhhhhhc--
Confidence 3444 468999999999999 7999999999999999999877 5578899999999888888876642
Q ss_pred CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHH
Q 046398 215 TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVL 294 (794)
Q Consensus 215 ~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l 294 (794)
.++++|++++|.+++ +|. -.++|++|+++ ++.+++ +|..
T Consensus 71 ---------~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~-~n~l~~-lp~~------------------------- 109 (454)
T 1jl5_A 71 ---------RQAHELELNNLGLSS-LPE----LPPHLESLVAS-CNSLTE-LPEL------------------------- 109 (454)
T ss_dssp ---------HTCSEEECTTSCCSC-CCS----CCTTCSEEECC-SSCCSS-CCCC-------------------------
T ss_pred ---------cCCCEEEecCCcccc-CCC----CcCCCCEEEcc-CCcCCc-cccc-------------------------
Confidence 568889999888874 332 12455555555 333333 2211
Q ss_pred HhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCC
Q 046398 295 DILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI 374 (794)
Q Consensus 295 ~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 374 (794)
.++|++|++++|++++. +.. .++|++|++++|.+++ +| .++++++|++|++++|++++ +|..+
T Consensus 110 -------~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--- 172 (454)
T 1jl5_A 110 -------PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--- 172 (454)
T ss_dssp -------CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---
T ss_pred -------cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---
Confidence 12777888888877753 221 2689999999999996 67 59999999999999999985 66543
Q ss_pred CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEe
Q 046398 375 SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLD 454 (794)
Q Consensus 375 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 454 (794)
++|++|++++|++++ ++ .+.++++|+.|++++|.+.+. +. .+.+|++|++++|.+. .+|. +..+++|++|+
T Consensus 173 ~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~ 243 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIY 243 (454)
T ss_dssp TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCC-cccc-cCCCCCCCEEE
Confidence 589999999999985 66 488999999999999998752 22 1258999999999887 5664 88899999999
Q ss_pred ccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccC
Q 046398 455 ISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCR 534 (794)
Q Consensus 455 Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 534 (794)
+++|++++ +|. .+++|++|++++|+++ .+|.. +++|+.|++++|++++. |. .
T Consensus 244 l~~N~l~~----------------l~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~l-~~---~ 295 (454)
T 1jl5_A 244 ADNNLLKT----------------LPD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSGL-SE---L 295 (454)
T ss_dssp CCSSCCSS----------------CCS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSEE-SC---C
T ss_pred CCCCcCCc----------------ccc---cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCcc-cC---c
Confidence 99998875 333 2378999999999988 46652 47899999999998863 21 1
Q ss_pred CCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcC
Q 046398 535 LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVS 614 (794)
Q Consensus 535 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs 614 (794)
.++|++|++++|++++. +. + .+.|+.|+++
T Consensus 296 ~~~L~~L~l~~N~l~~i-~~----~---------------------------------------------~~~L~~L~Ls 325 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSL-CD----L---------------------------------------------PPSLEELNVS 325 (454)
T ss_dssp CTTCCEEECCSSCCSEE-CC----C---------------------------------------------CTTCCEEECC
T ss_pred CCcCCEEECcCCcCCcc-cC----C---------------------------------------------cCcCCEEECC
Confidence 26889999999988741 11 0 1245899999
Q ss_pred CCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcc--cCcccccCCCCCCEEeCcCCcccc
Q 046398 615 KNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS--KISQSMSSLSFLNHLNVSNNLLTG 692 (794)
Q Consensus 615 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g 692 (794)
+|++++ +|.. +++|++|++++|+++ .+|. .+++|+.|++++|++++ .+|..+.. ++.|.+.|
T Consensus 326 ~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~ 389 (454)
T 1jl5_A 326 NNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLA 389 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---
T ss_pred CCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccc
Confidence 999986 6654 588999999999999 6777 47899999999999998 67766543 35688889
Q ss_pred cCCCCCccCccCcccccCCCcCC
Q 046398 693 KIPSSTQLQSFDASCFVGNNLCG 715 (794)
Q Consensus 693 ~iP~~~~~~~~~~~~~~gn~lcg 715 (794)
.+|.. +..+....+.+|.+.|
T Consensus 390 ~i~~~--~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 390 EVPEL--PQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----------------------
T ss_pred ccccc--cCcCCEEECCCCcCCc
Confidence 99874 4566667788887766
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-37 Score=343.55 Aligned_cols=358 Identities=19% Similarity=0.199 Sum_probs=203.3
Q ss_pred cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV 182 (794)
Q Consensus 103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~ 182 (794)
+.+.+..+..+.++++|++|+|++|.+.+.-.+..|..+++|++|+|++|++++..|..|+++++|++|++++|.+.
T Consensus 40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 116 (455)
T 3v47_A 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD--- 116 (455)
T ss_dssp SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB---
T ss_pred CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC---
Confidence 35565556666666777777777666654212445666667777777776666666666666667777777666532
Q ss_pred ccccccccCCCCc--cCCCCCCCEEECcCCCCCCCCCcc-ccCCCCCCeEeeeccCCCCCCCccccCCC--CCCcEEEcc
Q 046398 183 HSFSWLSGQIPNR--LGNLTSLRHLDLSANKFNSTTAGW-LSKFNHLEFLSLSSNGLQGTISSIGLENL--TSIKTIDLS 257 (794)
Q Consensus 183 ~~~~~~~~~lp~~--l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i~~~~l~~l--~~L~~L~L~ 257 (794)
+.+|.. +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+. .+..+ ++|+.|+++
T Consensus 117 -------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 117 -------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLS 188 (455)
T ss_dssp -------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECT
T ss_pred -------ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccc
Confidence 222322 666666777777766666665554 56666667777666666654444 44443 566666666
Q ss_pred CCCCCCCCCchh--------hhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCC
Q 046398 258 LNFELGGPIPTS--------FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSL 329 (794)
Q Consensus 258 ~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 329 (794)
++.+.+..+.. +..+++|+.|++++|.+.+..+..+.... ..++|+.|++++|...+....
T Consensus 189 -~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-------- 257 (455)
T 3v47_A 189 -SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI--AGTKIQSLILSNSYNMGSSFG-------- 257 (455)
T ss_dssp -TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT--TTCCEEEEECTTCTTTSCCTT--------
T ss_pred -cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc--cccceeeEeeccccccccccc--------
Confidence 44444333222 22445666666666666666655554431 112566666666544332110
Q ss_pred CEEEccCCcCcCCCCCCcC--CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398 330 RTLSLDDNCISGPLPPALG--DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407 (794)
Q Consensus 330 ~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l 407 (794)
.+.+.+..+..+. ..++|++|++++|.+++..|..++.+++|++|++++|++.+..+. .+..+++|+.|++
T Consensus 258 ------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L 330 (455)
T 3v47_A 258 ------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNL 330 (455)
T ss_dssp ------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC
T ss_pred ------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEEC
Confidence 0001111111111 123555555555555555555555555555555555555533222 4555555555555
Q ss_pred cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS 487 (794)
Q Consensus 408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~ 487 (794)
++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..++
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~ 395 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV---------------PDGIFDRLT 395 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCT
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC---------------CHhHhccCC
Confidence 55555555445555555666666666666656666677777777778877777652 234456777
Q ss_pred CCCEEEccCCcccccCC
Q 046398 488 NLEVLNLGDNEFVGKIP 504 (794)
Q Consensus 488 ~L~~L~Ls~n~l~~~ip 504 (794)
+|++|++++|++++..|
T Consensus 396 ~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCCcccCCC
Confidence 88888888888877776
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-36 Score=336.95 Aligned_cols=359 Identities=19% Similarity=0.206 Sum_probs=281.0
Q ss_pred cceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccc
Q 046398 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHS 184 (794)
Q Consensus 105 l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~ 184 (794)
..+..+..++++++|++|++++|.+++ +| .++.+++|++|++++|++++. | ++.+++|++|++++|.+.
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~----- 98 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT----- 98 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-----
T ss_pred cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-----
Confidence 344445578899999999999999995 45 689999999999999999974 4 899999999999998854
Q ss_pred ccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCC
Q 046398 185 FSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGG 264 (794)
Q Consensus 185 ~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~ 264 (794)
.+| ++++++|++|++++|++++. + ++.+++|++|++++|.+++. .++++++|++|+++ ++...+
T Consensus 99 ------~~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~-~n~~~~ 162 (457)
T 3bz5_A 99 ------NLD--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCH-LNKKIT 162 (457)
T ss_dssp ------CCC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECT-TCSCCC
T ss_pred ------eee--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee----ccccCCcCCEEECC-CCCccc
Confidence 344 88999999999999999885 3 89999999999999999863 47899999999999 444444
Q ss_pred CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCC
Q 046398 265 PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLP 344 (794)
Q Consensus 265 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 344 (794)
.+ .+..+++|+.|++++|++++. | +. .+++|++|++++|.+++. .++.+++|++|++++|++++ +|
T Consensus 163 ~~--~~~~l~~L~~L~ls~n~l~~l-~--l~-----~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 163 KL--DVTPQTQLTTLDCSFNKITEL-D--VS-----QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSCCCCC-C--CT-----TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred cc--ccccCCcCCEEECCCCcccee-c--cc-----cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 44 478899999999999999874 2 33 345999999999999975 37889999999999999997 55
Q ss_pred CCcCCCCCCCEEEccCCcccccCCccccCCC-------CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcC
Q 046398 345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKIS-------HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVN 417 (794)
Q Consensus 345 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 417 (794)
+..+++|++|++++|++++..+..+..++ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.++
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEE
T ss_pred --ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceec
Confidence 78899999999999999876544333332 34445555555444443 3456667777777766555544
Q ss_pred CCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCC
Q 046398 418 PNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497 (794)
Q Consensus 418 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n 497 (794)
. ...+|+.++++ .+++|++|++++|++++ + .+..+++|+.|++++|
T Consensus 304 ~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~----------------l--~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 304 C---QAAGITELDLS-------------QNPKLVYLYLNNTELTE----------------L--DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp C---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSC----------------C--CCTTCTTCSEEECCSS
T ss_pred c---CCCcceEechh-------------hcccCCEEECCCCcccc----------------c--ccccCCcCcEEECCCC
Confidence 3 22344444443 44789999999999886 3 2778999999999999
Q ss_pred cccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhh
Q 046398 498 EFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVN 557 (794)
Q Consensus 498 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 557 (794)
++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+.
T Consensus 350 ~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 350 HIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 9984 35677778999999876 3456788899999999999997654
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-36 Score=335.47 Aligned_cols=320 Identities=21% Similarity=0.233 Sum_probs=234.1
Q ss_pred CCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCC
Q 046398 134 IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFN 213 (794)
Q Consensus 134 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~ 213 (794)
.+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+. .+| ++.+++|++|++++|.++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-----------~~~--~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-----------TLD--LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-----------CCC--CTTCTTCSEEECCSSCCS
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-----------eEc--cccCCCCCEEECcCCCCc
Confidence 456788899999999999999964 5 6999999999999998854 344 889999999999999999
Q ss_pred CCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHH
Q 046398 214 STTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQV 293 (794)
Q Consensus 214 ~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 293 (794)
+. + ++++++|++|++++|.+++ + .++.+++|++|+++ ++.+++. .+.++++|+.|++++|...+.++
T Consensus 99 ~~-~--~~~l~~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~-~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~-- 165 (457)
T 3bz5_A 99 NL-D--VTPLTKLTYLNCDTNKLTK-L---DVSQNPLLTYLNCA-RNTLTEI---DVSHNTQLTELDCHLNKKITKLD-- 165 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCCEEECT-TSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--
T ss_pred ee-e--cCCCCcCCEEECCCCcCCe-e---cCCCCCcCCEEECC-CCcccee---ccccCCcCCEEECCCCCcccccc--
Confidence 86 2 8899999999999999986 3 37899999999999 6677763 27788889999998886555442
Q ss_pred HHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccC
Q 046398 294 LDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGK 373 (794)
Q Consensus 294 l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 373 (794)
+. .+++|++|++++|++++. | +..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| ++.
T Consensus 166 ~~-----~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~ 231 (457)
T 3bz5_A 166 VT-----PQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP 231 (457)
T ss_dssp CT-----TCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred cc-----cCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence 22 334888888888888873 3 67778888888888888764 36778888888888888876 55 677
Q ss_pred CCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEE
Q 046398 374 ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVL 453 (794)
Q Consensus 374 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 453 (794)
+++|++|++++|++++. + ...+++|+.++++.| +|+.+++++|.+.+.+| +..+++|+.|
T Consensus 232 l~~L~~L~l~~N~l~~~-~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L 291 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTEL-D---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKEL 291 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred cCCCCEEEeeCCcCCCc-C---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEE
Confidence 88888888888888753 2 345677777777665 35566667766665555 3556667777
Q ss_pred eccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc
Q 046398 454 DISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533 (794)
Q Consensus 454 ~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 533 (794)
++++|+..+.+| . ..++|+.|++++| ++|+.|++++|++++. + +.
T Consensus 292 ~Ls~n~~l~~l~---------------~---~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~ 336 (457)
T 3bz5_A 292 DVTHNTQLYLLD---------------C---QAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VS 336 (457)
T ss_dssp CCTTCTTCCEEE---------------C---TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CT
T ss_pred ECCCCcccceec---------------c---CCCcceEechhhc--------------ccCCEEECCCCccccc-c--cc
Confidence 777776554322 1 2234444444333 4566666666666653 2 66
Q ss_pred CCCCCCEEEccCCcCcc
Q 046398 534 RLTSLQILDVANNSLSG 550 (794)
Q Consensus 534 ~l~~L~~L~Ls~N~l~~ 550 (794)
.+++|+.||+++|++++
T Consensus 337 ~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 337 HNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCTTCSEEECCSSCCCB
T ss_pred cCCcCcEEECCCCCCCC
Confidence 66666666666666654
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=330.94 Aligned_cols=305 Identities=19% Similarity=0.185 Sum_probs=168.3
Q ss_pred CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407 (794)
Q Consensus 328 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l 407 (794)
+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..+.++++|++|+|++|++. .++...|.++++|+.|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence 4444444444444444444444444444444444444444444444444444444444444 333333444444555555
Q ss_pred cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS 487 (794)
Q Consensus 408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~ 487 (794)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++. .+..+..++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~l~~l~ 176 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI---------------PTEALSHLH 176 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC---------------CHHHHTTCT
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc---------------ChhHhcccC
Confidence 55444444444444444555555555555444455555556666666666655542 122344556
Q ss_pred CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398 488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567 (794)
Q Consensus 488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 567 (794)
+|+.|++++|++.+..+.. +..+++|+.|++++|.+.+.+|.......+|++|++++|++++..+..+.++++
T Consensus 177 ~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------ 249 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------ 249 (477)
T ss_dssp TCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT------
T ss_pred CCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc------
Confidence 6666666666665322222 224566666666666555555555545556666666666665332233333333
Q ss_pred ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647 (794)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 647 (794)
|+.|++++|++++..+..+..+++|+.|+|++|++++..|
T Consensus 250 ----------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 250 ----------------------------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp ----------------------------------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred ----------------------------------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 3666666666666666666667777777777777776666
Q ss_pred ccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCC
Q 046398 648 ENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP 695 (794)
Q Consensus 648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 695 (794)
..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 677777777777777777776666666667777777777777765543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-34 Score=322.51 Aligned_cols=347 Identities=29% Similarity=0.401 Sum_probs=241.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC
Q 046398 114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP 193 (794)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp 193 (794)
..+++++.|+++++.+.. +|. +..+++|++|++++|.+++..| ++++++|++|++++|.+. .++
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------~~~ 106 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-----------DIT 106 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-----------CCG
T ss_pred hHhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-----------cCh
Confidence 457899999999999984 554 7889999999999999986544 999999999999988754 344
Q ss_pred CccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhcc
Q 046398 194 NRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL 273 (794)
Q Consensus 194 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l 273 (794)
. +.++++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|+++ + .+.+. ..+.++
T Consensus 107 ~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~-~-~~~~~--~~~~~l 176 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFG-N-QVTDL--KPLANL 176 (466)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEE-E-SCCCC--GGGTTC
T ss_pred h-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecC-C-cccCc--hhhccC
Confidence 4 8999999999999999988754 8999999999999999885 33 58899999999996 3 33332 238888
Q ss_pred CCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCC
Q 046398 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSL 353 (794)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 353 (794)
++|+.|++++|.+.+.. .+.. +++|++|++++|.+++..+ ++.+++|++|++++|.+++. ..+..+++|
T Consensus 177 ~~L~~L~l~~n~l~~~~--~l~~-----l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 245 (466)
T 1o6v_A 177 TTLERLDISSNKVSDIS--VLAK-----LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL 245 (466)
T ss_dssp TTCCEEECCSSCCCCCG--GGGG-----CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred CCCCEEECcCCcCCCCh--hhcc-----CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCC
Confidence 88999999888877542 1233 3377778887777776554 56677777777777777643 346677777
Q ss_pred CEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEeccc
Q 046398 354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMS 433 (794)
Q Consensus 354 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 433 (794)
++|++++|.+++..+ +..+++|++|++++|.+.+.. . +..+++|+.|++++|.+.+..+
T Consensus 246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~L~~n~l~~~~~---------------- 304 (466)
T 1o6v_A 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-P--LAGLTALTNLELNENQLEDISP---------------- 304 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSCCSCCGG----------------
T ss_pred CEEECCCCccccchh--hhcCCCCCEEECCCCccCccc-c--ccCCCccCeEEcCCCcccCchh----------------
Confidence 777777777765443 667777777777777776432 2 5566666666666666543222
Q ss_pred ccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCC
Q 046398 434 CHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTS 513 (794)
Q Consensus 434 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 513 (794)
+..+++|+.|++++|++++. .| +..+++|+.|++++|++++ ++ .+. .+++
T Consensus 305 ----------~~~l~~L~~L~L~~n~l~~~---------------~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~ 354 (466)
T 1o6v_A 305 ----------ISNLKNLTYLTLYFNNISDI---------------SP--VSSLTKLQRLFFYNNKVSD-VS-SLA-NLTN 354 (466)
T ss_dssp ----------GGGCTTCSEEECCSSCCSCC---------------GG--GGGCTTCCEEECCSSCCCC-CG-GGT-TCTT
T ss_pred ----------hcCCCCCCEEECcCCcCCCc---------------hh--hccCccCCEeECCCCccCC-ch-hhc-cCCC
Confidence 34455556666666655542 11 3445556666666665553 22 222 4556
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEEccCCcCcc
Q 046398 514 LLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG 550 (794)
Q Consensus 514 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 550 (794)
|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6666666666655544 5556666666666666554
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.6e-34 Score=318.23 Aligned_cols=347 Identities=27% Similarity=0.408 Sum_probs=235.0
Q ss_pred CCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcC
Q 046398 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACG 301 (794)
Q Consensus 222 ~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~ 301 (794)
.+++++.|++.++.+. .++ .+..+++|++|+++ ++.+.+..+ +.++++|+.|++++|.+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~l~~n~l--------------- 102 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQI--------------- 102 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCC---------------
T ss_pred HhccccEEecCCCCCc-cCc--chhhhcCCCEEECC-CCccCCchh--hhccccCCEEECCCCcc---------------
Confidence 3556777777777665 233 25556666666666 334443322 55555555555555544
Q ss_pred cCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046398 302 ASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLD 381 (794)
Q Consensus 302 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 381 (794)
++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+
T Consensus 103 --------------~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 103 --------------ADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLS 162 (466)
T ss_dssp --------------CCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEE
T ss_pred --------------ccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEee
Confidence 43332 4555555555555555553322 5555555555555555553 22 355555555555
Q ss_pred ccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCC
Q 046398 382 LSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARIS 461 (794)
Q Consensus 382 Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 461 (794)
++ |.+.+ ++ .+.++++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|+++
T Consensus 163 l~-~~~~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 163 FG-NQVTD-LK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EE-ESCCC-CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred cC-CcccC-ch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 54 33321 11 245555556666655554432 124445566666666666665544 566888999999999887
Q ss_pred CCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEE
Q 046398 462 DTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL 541 (794)
Q Consensus 462 ~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 541 (794)
+ + ..+..+++|+.|++++|++++..| + ..+++|+.|++++|++++..+ +..+++|++|
T Consensus 235 ~----------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 235 D----------------I-GTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp C----------------C-GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred c----------------c-hhhhcCCCCCEEECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 5 2 246678899999999999885433 3 368899999999999987544 8889999999
Q ss_pred EccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc
Q 046398 542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE 621 (794)
Q Consensus 542 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 621 (794)
++++|++++..+ +.. ++.|+.|++++|++++.
T Consensus 293 ~L~~n~l~~~~~--~~~----------------------------------------------l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 293 ELNENQLEDISP--ISN----------------------------------------------LKNLTYLTLYFNNISDI 324 (466)
T ss_dssp ECCSSCCSCCGG--GGG----------------------------------------------CTTCSEEECCSSCCSCC
T ss_pred EcCCCcccCchh--hcC----------------------------------------------CCCCCEEECcCCcCCCc
Confidence 999999875433 333 34458999999999977
Q ss_pred cChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccccc
Q 046398 622 IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 622 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
.| +..+++|+.|++++|++++. ..+.++++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 325 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 66 78999999999999999965 578999999999999999999887 88999999999999999984
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-34 Score=309.86 Aligned_cols=333 Identities=20% Similarity=0.175 Sum_probs=216.8
Q ss_pred cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398 273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS 352 (794)
Q Consensus 273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 352 (794)
+.+++.++++++.+....+..+..++ +|++|++++|.+++..+..+..+++|++|++++|.+++..|..++++++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccc-----cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 44555555555555444444444433 5555555555555444445555555555555555555444444555555
Q ss_pred CCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecc
Q 046398 353 LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432 (794)
Q Consensus 353 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 432 (794)
|++|++++|.+++..+..+..+++|++|++++|.+. ...+..+..+++|++|+++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEEECC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEEECC
Confidence 555555555554322222344555555555555554 4333444444455555555
Q ss_pred cccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT 512 (794)
Q Consensus 433 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 512 (794)
+|.+++. .+..+++|+.|++++|.+++ +...++|++|++++|++. .+|.. ..+
T Consensus 174 ~n~l~~~---~~~~l~~L~~L~l~~n~l~~--------------------~~~~~~L~~L~l~~n~l~-~~~~~---~~~ 226 (390)
T 3o6n_A 174 SNRLTHV---DLSLIPSLFHANVSYNLLST--------------------LAIPIAVEELDASHNSIN-VVRGP---VNV 226 (390)
T ss_dssp SSCCSBC---CGGGCTTCSEEECCSSCCSE--------------------EECCSSCSEEECCSSCCC-EEECC---CCS
T ss_pred CCcCCcc---ccccccccceeecccccccc--------------------cCCCCcceEEECCCCeee-ecccc---ccc
Confidence 5554433 14456778888888887764 123357888888888887 44543 357
Q ss_pred CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398 513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592 (794)
Q Consensus 513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 592 (794)
+|+.|++++|++++. ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------ 274 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------------------------ 274 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------------------------
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------------------------
Confidence 889999999988864 568888999999999999888777777665554
Q ss_pred EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ 672 (794)
Q Consensus 593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 672 (794)
+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|+++.. |
T Consensus 275 ----------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~- 334 (390)
T 3o6n_A 275 ----------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K- 334 (390)
T ss_dssp ----------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred ----------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-
Confidence 788999999884 5667788999999999999998 6788899999999999999999865 3
Q ss_pred cccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCC
Q 046398 673 SMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGP 716 (794)
Q Consensus 673 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~ 716 (794)
+..+++|+.|++++|++.+.-.. ..+..+....+.++ ..|+.
T Consensus 335 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred -chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 67889999999999999875321 23444444445555 55543
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=317.74 Aligned_cols=328 Identities=21% Similarity=0.217 Sum_probs=277.8
Q ss_pred CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398 304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS 383 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 383 (794)
+++.|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..+..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 78888999999888888889999999999999999998888889999999999999999986666678889999999999
Q ss_pred CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398 384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT 463 (794)
Q Consensus 384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 463 (794)
+|++.+..+. .|..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 113 ~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~- 190 (477)
T 2id5_A 113 ENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA- 190 (477)
T ss_dssp TSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-
T ss_pred CCccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-
Confidence 9999855444 78899999999999999998888888899999999999999988777789999999999999998875
Q ss_pred cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398 464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV 543 (794)
Q Consensus 464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 543 (794)
..+..+..+++|+.|++++|.+.+.+|...+ ...+|+.|++++|++++..+..+..+++|++|+|
T Consensus 191 --------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 191 --------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp --------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred --------------eChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 3456788999999999999998888888777 4669999999999999766678999999999999
Q ss_pred cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398 544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623 (794)
Q Consensus 544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 623 (794)
++|++++..+..+.++++| +.|++++|++++..|
T Consensus 256 s~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRL----------------------------------------------QEIQLVGGQLAVVEP 289 (477)
T ss_dssp CSSCCCEECTTSCTTCTTC----------------------------------------------CEEECCSSCCSEECT
T ss_pred CCCcCCccChhhccccccC----------------------------------------------CEEECCCCccceECH
Confidence 9999997777666655544 899999999999999
Q ss_pred hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCC
Q 046398 624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP 695 (794)
Q Consensus 624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 695 (794)
..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++....+.. .-...+..+++.++.....-|
T Consensus 290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence 99999999999999999999777778899999999999999998754321 111223344555555544434
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-33 Score=325.87 Aligned_cols=334 Identities=20% Similarity=0.184 Sum_probs=231.1
Q ss_pred cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398 273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS 352 (794)
Q Consensus 273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 352 (794)
+.+++.++++++.+....+..+..++ +|++|++++|.+++..+..|+.+++|++|+|++|.+++..|..|+++++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCC-----CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 45566666666665555554455444 5666666666655555555555566666666666655555555555556
Q ss_pred CCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecc
Q 046398 353 LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432 (794)
Q Consensus 353 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 432 (794)
|++|+|++|.+++..+..++.+++|++|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N---------------------- 181 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSN---------------------- 181 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTS----------------------
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCC----------------------
Confidence 66666666655543333345555555555555555533222 4455555555555555
Q ss_pred cccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT 512 (794)
Q Consensus 433 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 512 (794)
.+++.. +..+++|+.|++++|.+++ +...++|+.|++++|.++ .+|... .+
T Consensus 182 --~l~~~~---~~~l~~L~~L~l~~n~l~~--------------------l~~~~~L~~L~ls~n~l~-~~~~~~---~~ 232 (597)
T 3oja_B 182 --RLTHVD---LSLIPSLFHANVSYNLLST--------------------LAIPIAVEELDASHNSIN-VVRGPV---NV 232 (597)
T ss_dssp --CCSBCC---GGGCTTCSEEECCSSCCSE--------------------EECCTTCSEEECCSSCCC-EEECSC---CS
T ss_pred --CCCCcC---hhhhhhhhhhhcccCcccc--------------------ccCCchhheeeccCCccc-cccccc---CC
Confidence 444321 3456778888888887764 223457888889888887 444432 46
Q ss_pred CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398 513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592 (794)
Q Consensus 513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 592 (794)
+|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..+.++++|
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------------------------ 280 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------------------------ 280 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------------------------
T ss_pred CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------------------------
Confidence 88999999998886 3678888999999999999988888777766555
Q ss_pred EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ 672 (794)
Q Consensus 593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 672 (794)
+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++..
T Consensus 281 ----------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-- 340 (597)
T 3oja_B 281 ----------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-- 340 (597)
T ss_dssp ----------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred ----------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--
Confidence 788999999985 5777788999999999999999 78888999999999999999998753
Q ss_pred cccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCC
Q 046398 673 SMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPP 717 (794)
Q Consensus 673 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~ 717 (794)
+..+++|+.|++++|++++..+. ..+..+....+.++ ..|+.+
T Consensus 341 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred -hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 67789999999999999987432 34566666677888 888764
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.3e-34 Score=298.91 Aligned_cols=258 Identities=26% Similarity=0.501 Sum_probs=224.9
Q ss_pred CCCCeEeccCccccc--ccChhhhcCCCCCCEEECcC-CcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCC
Q 046398 375 SHLEYLDLSNNKMNG--TLSEIHFVNLTKLTWFSASG-NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLS 451 (794)
Q Consensus 375 ~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 451 (794)
.+++.|++++|.+.+ .+|. .+.++++|++|++++ |. +.+.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~------------------------l~~~~p~~l~~l~~L~ 104 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINN------------------------LVGPIPPAIAKLTQLH 104 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETT------------------------EESCCCGGGGGCTTCS
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCc------------------------ccccCChhHhcCCCCC
Confidence 467888888888876 6665 566666666666663 44 4456677788888999
Q ss_pred EEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcc
Q 046398 452 VLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ 531 (794)
Q Consensus 452 ~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~ 531 (794)
+|++++|++++ .+|..+..+++|++|++++|++++.+|..+. .+++|++|++++|++++.+|..
T Consensus 105 ~L~Ls~n~l~~---------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 105 YLYITHTNVSG---------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp EEEEEEECCEE---------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGG
T ss_pred EEECcCCeeCC---------------cCCHHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHH
Confidence 99999997764 4677788899999999999999988898877 6999999999999999999999
Q ss_pred ccCCC-CCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398 532 LCRLT-SLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI 610 (794)
Q Consensus 532 ~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 610 (794)
+..++ +|++|++++|++++.+|..+..++ | +.
T Consensus 169 l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L----------------------------------------------~~ 201 (313)
T 1ogq_A 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-L----------------------------------------------AF 201 (313)
T ss_dssp GGCCCTTCCEEECCSSEEEEECCGGGGGCC-C----------------------------------------------SE
T ss_pred HhhhhhcCcEEECcCCeeeccCChHHhCCc-c----------------------------------------------cE
Confidence 99998 999999999999999888776543 3 88
Q ss_pred EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398 611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690 (794)
Q Consensus 611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 690 (794)
|++++|++++.+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 99999999999999999999999999999999977766 88999999999999999999999999999999999999999
Q ss_pred cccCCCCCccCccCcccccCC-CcCCCCCCCC
Q 046398 691 TGKIPSSTQLQSFDASCFVGN-NLCGPPLPSC 721 (794)
Q Consensus 691 ~g~iP~~~~~~~~~~~~~~gn-~lcg~~~~~c 721 (794)
+|.+|...++..+....+.+| .+||.|++.|
T Consensus 281 ~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp EEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 999999988999999999999 7999887766
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-33 Score=304.32 Aligned_cols=311 Identities=23% Similarity=0.268 Sum_probs=186.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcc-cCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCC
Q 046398 114 VDLKHLTHLDLSGNDFQGIRIPKY-LGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQI 192 (794)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~l 192 (794)
..++++++|++++|.++. +|.. +..+++|++|++++|.+++..+..|+.+++|++|++++|.+ .+..
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~ 109 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI----------RYLP 109 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----------CCCC
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC----------CcCC
Confidence 457888999999988884 5554 67888999999999988877777888888888888887774 3444
Q ss_pred CCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhc
Q 046398 193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR 272 (794)
Q Consensus 193 p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~ 272 (794)
|..++++++|++|++++|.++...+..+.++++|++|++++|.+++..+. .+..+++|++|+++ ++.+++. .+..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~-~n~l~~~---~~~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLS-SNRLTHV---DLSL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECC-SSCCSBC---CGGG
T ss_pred HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECC-CCcCCcc---cccc
Confidence 56678888888888888888877766678888888888888888744443 67777777777777 4444432 2344
Q ss_pred cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398 273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS 352 (794)
Q Consensus 273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 352 (794)
+++|+.+++++|.+++. ...++|++|++++|.+... |.. ..++
T Consensus 185 l~~L~~L~l~~n~l~~~----------------------------------~~~~~L~~L~l~~n~l~~~-~~~--~~~~ 227 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTL----------------------------------AIPIAVEELDASHNSINVV-RGP--VNVE 227 (390)
T ss_dssp CTTCSEEECCSSCCSEE----------------------------------ECCSSCSEEECCSSCCCEE-ECC--CCSS
T ss_pred ccccceeeccccccccc----------------------------------CCCCcceEEECCCCeeeec-ccc--cccc
Confidence 55566666655554431 1123444555555444422 211 1244
Q ss_pred CCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecc
Q 046398 353 LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432 (794)
Q Consensus 353 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 432 (794)
|++|++++|.+++. ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++.
T Consensus 228 L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~----------------- 287 (390)
T 3o6n_A 228 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVAL----------------- 287 (390)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEE-----------------
T ss_pred ccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCccc-----------------
Confidence 55555555555432 2445555555555555555533333 445555555555555544332
Q ss_pred cccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT 512 (794)
Q Consensus 433 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 512 (794)
|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .++ + ..++
T Consensus 288 --------~~~~~~l~~L~~L~L~~n~l~~----------------~~~~~~~l~~L~~L~L~~N~i~-~~~--~-~~~~ 339 (390)
T 3o6n_A 288 --------NLYGQPIPTLKVLDLSHNHLLH----------------VERNQPQFDRLENLYLDHNSIV-TLK--L-STHH 339 (390)
T ss_dssp --------ECSSSCCTTCCEEECCSSCCCC----------------CGGGHHHHTTCSEEECCSSCCC-CCC--C-CTTC
T ss_pred --------CcccCCCCCCCEEECCCCccee----------------cCccccccCcCCEEECCCCccc-eeC--c-hhhc
Confidence 1112234445555555555443 2333344455555555555554 333 1 1355
Q ss_pred CCcEEEcccccccc
Q 046398 513 SLLILILRSNKFDG 526 (794)
Q Consensus 513 ~L~~L~L~~n~l~~ 526 (794)
+|+.|++++|++..
T Consensus 340 ~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 340 TLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSEEECCSSCEEH
T ss_pred cCCEEEcCCCCccc
Confidence 56666666665554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-32 Score=314.40 Aligned_cols=242 Identities=23% Similarity=0.243 Sum_probs=144.9
Q ss_pred CCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC
Q 046398 115 DLKHLTHLDLSGNDFQGIRIPK-YLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP 193 (794)
Q Consensus 115 ~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp 193 (794)
.+++++.|++++|.+.. +|. .+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+ .+..|
T Consensus 49 ~l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI----------RYLPP 116 (597)
T ss_dssp GGCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----------CCCCT
T ss_pred cCCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC----------CCCCH
Confidence 56788888888888874 444 467788888888888888877777888888888888887763 34455
Q ss_pred CccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhcc
Q 046398 194 NRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL 273 (794)
Q Consensus 194 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l 273 (794)
..|+++++|++|+|++|.+++.++..|.++++|++|++++|.+++..+. .+..+++|++|+++ +|.+.+. .+..+
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~-~N~l~~~---~~~~l 191 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLS-SNRLTHV---DLSLI 191 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECT-TSCCSBC---CGGGC
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECc-CCCCCCc---Chhhh
Confidence 6677888888888888888877777677888888888888877755444 66777777777776 4444433 13445
Q ss_pred CCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCC
Q 046398 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSL 353 (794)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 353 (794)
++|+.|++++|.+++.. ..++|++|++++|.++...+.. .++|+.|++++|.+++. ..+..+++|
T Consensus 192 ~~L~~L~l~~n~l~~l~----------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L 256 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLA----------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGL 256 (597)
T ss_dssp TTCSEEECCSSCCSEEE----------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhhhhhhcccCcccccc----------CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCC
Confidence 55555555555544311 1114444444444444322211 13444444444444431 333444444
Q ss_pred CEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046398 354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN 388 (794)
Q Consensus 354 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 388 (794)
++|++++|.+++..|..++.+++|++|+|++|.+.
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 44444444444444444444444444444444433
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=287.07 Aligned_cols=302 Identities=24% Similarity=0.365 Sum_probs=197.7
Q ss_pred CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398 304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS 383 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 383 (794)
+|++|+++++.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECT
T ss_pred cccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECc
Confidence 444444444444432 1 244455555555555555532 22 4555555555555555542 22 35555555555555
Q ss_pred CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398 384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT 463 (794)
Q Consensus 384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 463 (794)
+|.+.+ ++. +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+
T Consensus 119 ~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~- 191 (347)
T 4fmz_A 119 EDNISD-ISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED- 191 (347)
T ss_dssp TSCCCC-CGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-
T ss_pred CCcccC-chh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-
Confidence 555542 222 4455555555555553332221 14445556666666665554333 6677888888888888775
Q ss_pred cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398 464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV 543 (794)
Q Consensus 464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 543 (794)
++. +..+++|+.|++++|++++ ++. + ..+++|+.|++++|++++..+ +..+++|++|++
T Consensus 192 ---------------~~~-~~~l~~L~~L~l~~n~l~~-~~~-~-~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 192 ---------------ISP-LASLTSLHYFTAYVNQITD-ITP-V-ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp ---------------CGG-GGGCTTCCEEECCSSCCCC-CGG-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ---------------ccc-ccCCCccceeecccCCCCC-Cch-h-hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 222 6677888888888888874 333 3 368888889998888886544 788888999999
Q ss_pred cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398 544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623 (794)
Q Consensus 544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 623 (794)
++|++++. ..+.. +++|+.|++++|++++.
T Consensus 251 ~~n~l~~~--~~~~~----------------------------------------------l~~L~~L~l~~n~l~~~-- 280 (347)
T 4fmz_A 251 GTNQISDI--NAVKD----------------------------------------------LTKLKMLNVGSNQISDI-- 280 (347)
T ss_dssp CSSCCCCC--GGGTT----------------------------------------------CTTCCEEECCSSCCCCC--
T ss_pred CCCccCCC--hhHhc----------------------------------------------CCCcCEEEccCCccCCC--
Confidence 98888742 12222 34458899999998854
Q ss_pred hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccc
Q 046398 624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691 (794)
Q Consensus 624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 691 (794)
+.+..+++|+.|++++|++++..|+.++.+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 458889999999999999998888889999999999999999988766 788999999999999875
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-30 Score=279.15 Aligned_cols=280 Identities=24% Similarity=0.332 Sum_probs=181.2
Q ss_pred CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398 304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS 383 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 383 (794)
+|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+. +. +..+++|++|+++
T Consensus 67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLG 140 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECT
T ss_pred CccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECC
Confidence 34444444444433222 4444444455554444442 11 344444455555555444422 21 4444455555555
Q ss_pred CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398 384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT 463 (794)
Q Consensus 384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 463 (794)
+|.....++ .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.
T Consensus 141 ~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 141 ANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCC
Confidence 443332222 24444455555555544433222 3444555555555555554332 67788999999999988762
Q ss_pred cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398 464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV 543 (794)
Q Consensus 464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 543 (794)
+. +..+++|++|++++|+++ .++. + ..+++|++|++++|++++. ..+..+++|++|++
T Consensus 215 ----------------~~-~~~~~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 215 ----------------TP-VANMTRLNSLKIGNNKIT-DLSP-L-ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272 (347)
T ss_dssp ----------------GG-GGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ----------------ch-hhcCCcCCEEEccCCccC-CCcc-h-hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEc
Confidence 22 667899999999999998 4554 3 3789999999999999864 46889999999999
Q ss_pred cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398 544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623 (794)
Q Consensus 544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 623 (794)
++|++++. + .+.. ++.|+.|++++|++++..|
T Consensus 273 ~~n~l~~~-~-~~~~----------------------------------------------l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 273 GSNQISDI-S-VLNN----------------------------------------------LSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp CSSCCCCC-G-GGGG----------------------------------------------CTTCSEEECCSSCCCGGGH
T ss_pred cCCccCCC-h-hhcC----------------------------------------------CCCCCEEECcCCcCCCcCh
Confidence 99998753 2 2333 3445899999999999999
Q ss_pred hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398 624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS 667 (794)
Q Consensus 624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 667 (794)
..++.+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999999997655 899999999999999986
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4e-32 Score=287.73 Aligned_cols=271 Identities=16% Similarity=0.257 Sum_probs=182.4
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCCCCCCCC----CCCCCCcceeeeEecC--------CCCcEEEEEcCCCCCccccccch
Q 046398 29 VGCTDSEREALLKLKQDLK-DPSNRLGSW----VVDGDCCKWAEVVCSN--------LTGHVLQLSLRNPFRNDLRYATT 95 (794)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~-~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~~~~~~~~~~ 95 (794)
..+..+|++||++||+++. ++.+...+| ....++|.|.|+.|.. ...+|+.|+++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---------- 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---------- 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence 4567789999999999984 676667889 3467899999999952 2356777777663
Q ss_pred hhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCc
Q 046398 96 EYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175 (794)
Q Consensus 96 ~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 175 (794)
.+. .+|+.+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++
T Consensus 92 --------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 92 --------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp --------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred --------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 444 56666777777777777777777 46777777777777777777777 6677777777777777776
Q ss_pred cccccccccccccccCCCCccCC---------CCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccC
Q 046398 176 SEYALQVHSFSWLSGQIPNRLGN---------LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE 246 (794)
Q Consensus 176 ~~~~~~~~~~~~~~~~lp~~l~~---------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~ 246 (794)
|. ..+.+|..+.. +++|++|++++|.++ .+|..+.++++|++|++++|.+++ ++. .+.
T Consensus 160 n~----------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~-~l~ 226 (328)
T 4fcg_A 160 CP----------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP-AIH 226 (328)
T ss_dssp ET----------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG-GGG
T ss_pred CC----------CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch-hhc
Confidence 55 33455555443 666666666666665 444555666666666666666552 333 345
Q ss_pred CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCC
Q 046398 247 NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF 326 (794)
Q Consensus 247 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 326 (794)
.+++|++|+++ +|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..+
T Consensus 227 ~l~~L~~L~Ls-~n~~~~~~p~~~~~l~-----------------------------~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 227 HLPKLEELDLR-GCTALRNYPPIFGGRA-----------------------------PLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp GCTTCCEEECT-TCTTCCBCCCCTTCCC-----------------------------CCCEEECTTCTTCCBCCTTGGGC
T ss_pred cCCCCCEEECc-CCcchhhhHHHhcCCC-----------------------------CCCEEECCCCCchhhcchhhhcC
Confidence 55555555555 3344444444444444 55666666666666677777778
Q ss_pred CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCccc
Q 046398 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN 364 (794)
Q Consensus 327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (794)
++|++|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888888888888766554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.4e-30 Score=275.46 Aligned_cols=290 Identities=20% Similarity=0.262 Sum_probs=210.8
Q ss_pred CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407 (794)
Q Consensus 328 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l 407 (794)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++..+ ..+.++++|+.|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEEC
Confidence 4555666555555 3444332 455666666666554445555566666666666666553222 24555666666666
Q ss_pred cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS 487 (794)
Q Consensus 408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~ 487 (794)
++|.+.. ++..+. ++|++|++++|.+....+..+..+++|++|++++|.++.. +..|..+..+
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l- 172 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL- 172 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-
Confidence 6665542 222222 5777788888877777777788899999999999988631 2345667677
Q ss_pred CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398 488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567 (794)
Q Consensus 488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 567 (794)
+|++|++++|+++ .+|..+. ++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 173 ~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----- 243 (332)
T 2ft3_A 173 KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL----- 243 (332)
T ss_dssp CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-----
T ss_pred ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-----
Confidence 8999999999998 5777543 789999999999998888899999999999999999988777666655544
Q ss_pred ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647 (794)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 647 (794)
+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 244 -----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 244 -----------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp -----------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred -----------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 88999999998 788889999999999999999997666
Q ss_pred ccccc------cCCCCEEeCCCCcCc--ccCcccccCCCCCCEEeCcCCc
Q 046398 648 ENIGN------LISIESLDFSTNQLS--SKISQSMSSLSFLNHLNVSNNL 689 (794)
Q Consensus 648 ~~l~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 689 (794)
..|.. ..+|+.|++++|++. +..|..+..++.|+.+++++|+
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66655 367899999999998 6778889999999999999885
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.3e-30 Score=271.54 Aligned_cols=291 Identities=20% Similarity=0.237 Sum_probs=206.7
Q ss_pred CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398 304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS 383 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 383 (794)
+++.++++++.++. +|..+ .++++.|++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56666666666653 33322 2466666666666665555556666666666666666665556666666666666666
Q ss_pred CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398 384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT 463 (794)
Q Consensus 384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 463 (794)
+|+++ .++. .+. ++|++|++++|.+.+..+..+..+++|++|++++|++...
T Consensus 109 ~n~l~-~l~~-------------------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 109 KNQLK-ELPE-------------------------KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp SSCCS-BCCS-------------------------SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred CCcCC-ccCh-------------------------hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence 66665 3332 111 3566666666666666666778888899999998887631
Q ss_pred cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398 464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV 543 (794)
Q Consensus 464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 543 (794)
+..+..+..+++|++|++++|+++ .+|..+ .++|+.|++++|++++..|..+..+++|++|++
T Consensus 161 -------------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 161 -------------GIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp -------------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred -------------CcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 235567778889999999999887 677654 378899999999988888888888999999999
Q ss_pred cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398 544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623 (794)
Q Consensus 544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 623 (794)
++|++++..+..+..+++| +.|++++|+++ .+|
T Consensus 224 s~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHL----------------------------------------------RELHLNNNKLV-KVP 256 (330)
T ss_dssp CSSCCCEECTTTGGGSTTC----------------------------------------------CEEECCSSCCS-SCC
T ss_pred CCCcCceeChhhccCCCCC----------------------------------------------CEEECCCCcCc-cCC
Confidence 9998887766666554444 78888888888 788
Q ss_pred hhhhcccCCCEEecccccccccCCccccc------cCCCCEEeCCCCcCcc--cCcccccCCCCCCEEeCcCCc
Q 046398 624 MELTYLRGLQSLNLSHNIFTGQIPENIGN------LISIESLDFSTNQLSS--KISQSMSSLSFLNHLNVSNNL 689 (794)
Q Consensus 624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 689 (794)
..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++.. ..|..+..+..++.+++++|+
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 88888889999999999988665666643 3778888999988864 566778888888888888874
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-32 Score=306.73 Aligned_cols=371 Identities=19% Similarity=0.180 Sum_probs=167.7
Q ss_pred CCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCC----CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhh
Q 046398 224 NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGG----PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSA 299 (794)
Q Consensus 224 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 299 (794)
++|++|++++|.++.......+..+++|++|+++ ++.+++ .++..+..+++|+.|++++|.+.+..+..+...-.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEcc-CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4566777777766533222124455666666666 333332 23344555556666666665555433333222110
Q ss_pred cCcCCccEEEeecccccc----cccccccCCCCCCEEEccCCcCcCCCCCCc-----CCCCCCCEEEccCCccccc----
Q 046398 300 CGASALESLVFSSSQISG----HLTSQLGQFKSLRTLSLDDNCISGPLPPAL-----GDLSSLTRLDLSRNMLNGS---- 366 (794)
Q Consensus 300 ~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~---- 366 (794)
...++|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 011135555555555542 234444455555555555554442211111 1123455555555544432
Q ss_pred CCccccCCCCCCeEeccCcccccccChhhhcC-CCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC----CC
Q 046398 367 IPLSLGKISHLEYLDLSNNKMNGTLSEIHFVN-LTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ----FP 441 (794)
Q Consensus 367 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~ 441 (794)
++..+..+++|++|++++|.+.+.... .+.. +. ...++|++|++++|.++.. ++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~--------------------~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVR-VLCQGLK--------------------DSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHH-HHHHHHH--------------------HSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHH-HHHHHHh--------------------cCCCCceEEEccCCCCcHHHHHHHH
Confidence 122333344444444444444321111 1100 00 0112344444444444332 34
Q ss_pred cccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccccc----CChhhhhcCCCCcEE
Q 046398 442 SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGK----IPTWMGEGFTSLLIL 517 (794)
Q Consensus 442 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----ip~~~~~~l~~L~~L 517 (794)
..+..+++|++|++++|++++.....+ .+..+..+++|++|++++|++++. ++..+. .+++|++|
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l----------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L 289 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAEL----------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKEL 289 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHH----------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEE
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHH----------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceE
Confidence 444555666666666665543211100 011122455666666666666532 333333 35666666
Q ss_pred EcccccccccCCcccc-----CCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398 518 ILRSNKFDGFLPIQLC-----RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592 (794)
Q Consensus 518 ~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 592 (794)
++++|++++..+..+. ..++|++|++++|.+++.....+.
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~----------------------------------- 334 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS----------------------------------- 334 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH-----------------------------------
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH-----------------------------------
Confidence 6666665543322222 124666666666665533111100
Q ss_pred EEeccchhhcccccceeEEEcCCCccccccChhhhc-----ccCCCEEecccccccc----cCCccccccCCCCEEeCCC
Q 046398 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY-----LRGLQSLNLSHNIFTG----QIPENIGNLISIESLDFST 663 (794)
Q Consensus 593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~ 663 (794)
.....++.|+.||+++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|+.|++++
T Consensus 335 -------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 335 -------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp -------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred -------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 00111233356666666665544444432 4466666666666654 5555566666666666666
Q ss_pred CcCccc
Q 046398 664 NQLSSK 669 (794)
Q Consensus 664 N~l~~~ 669 (794)
|++++.
T Consensus 408 N~i~~~ 413 (461)
T 1z7x_W 408 NCLGDA 413 (461)
T ss_dssp SSCCHH
T ss_pred CCCCHH
Confidence 666543
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.1e-29 Score=268.20 Aligned_cols=290 Identities=22% Similarity=0.269 Sum_probs=159.6
Q ss_pred CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCC
Q 046398 275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT 354 (794)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 354 (794)
+++.++++++.++. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|+
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~-------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI-------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC-------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCccc-cCCCC-------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 57777777776653 22211 12677777777777766666677777777777777777766666677777777
Q ss_pred EEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccc
Q 046398 355 RLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC 434 (794)
Q Consensus 355 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 434 (794)
+|++++|.++ .+|..+. ++|++|++++|++. .++...+..+++|+.|++++|.+...
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~------------------- 162 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS------------------- 162 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGG-------------------
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccC-------------------
Confidence 7777777776 4554443 66777777777776 44444566667777777776665420
Q ss_pred cCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCC
Q 046398 435 HLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSL 514 (794)
Q Consensus 435 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L 514 (794)
+..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|++++..+..+. .+++|
T Consensus 163 ---~~~~~~~~~l-~L~~L~l~~n~l~~----------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L 219 (332)
T 2ft3_A 163 ---GFEPGAFDGL-KLNYLRISEAKLTG----------------IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKL 219 (332)
T ss_dssp ---GSCTTSSCSC-CCSCCBCCSSBCSS----------------CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTC
T ss_pred ---CCCcccccCC-ccCEEECcCCCCCc----------------cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCC
Confidence 1223333333 44555555554443 222221 3455555555555432223332 34555
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEE
Q 046398 515 LILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM 594 (794)
Q Consensus 515 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 594 (794)
+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 220 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L-------------------------------- 266 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL-------------------------------- 266 (332)
T ss_dssp SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC--------------------------------
T ss_pred CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC--------------------------------
Confidence 55555555555444444555555555555555554 344333332222
Q ss_pred eccchhhcccccceeEEEcCCCccccccChhhhc------ccCCCEEeccccccc--ccCCccccccCCCCEEeCCCCc
Q 046398 595 KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY------LRGLQSLNLSHNIFT--GQIPENIGNLISIESLDFSTNQ 665 (794)
Q Consensus 595 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~L~Ls~N~ 665 (794)
+.|++++|++++..+..+.. ...|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 267 --------------~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 --------------QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --------------CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --------------CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 45555555555443333332 245666777777665 4555666777777777777664
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-32 Score=304.93 Aligned_cols=367 Identities=19% Similarity=0.150 Sum_probs=229.0
Q ss_pred CCCcEEEccCCCCCCCCCch-hhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccc-cCC
Q 046398 249 TSIKTIDLSLNFELGGPIPT-SFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQL-GQF 326 (794)
Q Consensus 249 ~~L~~L~L~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l 326 (794)
++|++|+++ ++.++..... .+..+++|+.|++++|.+++.....+... ...+++|++|++++|.+++..+..+ ..+
T Consensus 3 ~~l~~L~Ls-~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhh-hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 456666776 3344332222 25566666666666666654322221111 0012256666666666554333222 123
Q ss_pred C----CCCEEEccCCcCcC----CCCCCcCCCCCCCEEEccCCcccccCCcccc-----CCCCCCeEeccCcccccccC-
Q 046398 327 K----SLRTLSLDDNCISG----PLPPALGDLSSLTRLDLSRNMLNGSIPLSLG-----KISHLEYLDLSNNKMNGTLS- 392 (794)
Q Consensus 327 ~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~~~- 392 (794)
+ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 3 46666666666553 2344555556666666666655433222221 13456666666665543211
Q ss_pred --hhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccC-----CCCCCCEEeccCCCCCCCcc
Q 046398 393 --EIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH-----SQKNLSVLDISNARISDTIP 465 (794)
Q Consensus 393 --~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~p 465 (794)
...+..+++|+.|++++|. ++...+..+. ..++|++|++++|.+++...
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~------------------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND------------------------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB------------------------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HHHHHHhhCCCCCEEECcCCC------------------------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 1123344555555555544 3322222221 35689999999998876311
Q ss_pred hhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC----hhhhhcCCCCcEEEccccccccc----CCccccCCCC
Q 046398 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP----TWMGEGFTSLLILILRSNKFDGF----LPIQLCRLTS 537 (794)
Q Consensus 466 ~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip----~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~ 537 (794)
. .++..+..+++|++|++++|++++... ..+...+++|+.|++++|++++. ++..+..+++
T Consensus 217 ~-----------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 217 R-----------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp H-----------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred H-----------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence 1 134556678899999999998875422 22222478999999999998864 5667777899
Q ss_pred CCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCc
Q 046398 538 LQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN 617 (794)
Q Consensus 538 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 617 (794)
|++|++++|.+.+..+..+...- ....+.|+.|++++|.
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l-----------------------------------------~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETL-----------------------------------------LEPGCQLESLWVKSCS 324 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHH-----------------------------------------TSTTCCCCEEECTTSC
T ss_pred cceEECCCCCCchHHHHHHHHHh-----------------------------------------ccCCccceeeEcCCCC
Confidence 99999999988754433332110 0112467999999999
Q ss_pred cccc----cChhhhcccCCCEEecccccccccCCccccc-----cCCCCEEeCCCCcCcc----cCcccccCCCCCCEEe
Q 046398 618 FSGE----IPMELTYLRGLQSLNLSHNIFTGQIPENIGN-----LISIESLDFSTNQLSS----KISQSMSSLSFLNHLN 684 (794)
Q Consensus 618 l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ 684 (794)
+++. ++..+..+++|++|+|++|++++..+..+.. .++|+.|+|++|++++ .+|..+..+++|++|+
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 9876 5777888899999999999999776665554 6799999999999997 7899999999999999
Q ss_pred CcCCccccc
Q 046398 685 VSNNLLTGK 693 (794)
Q Consensus 685 ls~N~l~g~ 693 (794)
+++|++++.
T Consensus 405 l~~N~i~~~ 413 (461)
T 1z7x_W 405 LSNNCLGDA 413 (461)
T ss_dssp CCSSSCCHH
T ss_pred CCCCCCCHH
Confidence 999999865
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.4e-29 Score=264.25 Aligned_cols=290 Identities=21% Similarity=0.262 Sum_probs=185.6
Q ss_pred CCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCC
Q 046398 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSL 353 (794)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 353 (794)
.+++.++++++.++.. |..+ .+.+++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|
T Consensus 31 c~l~~l~~~~~~l~~l-p~~~-------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKV-PKDL-------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSC-CCSC-------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCeEEEecCCCcccc-CccC-------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 4789999999888743 2221 2389999999999999888899999999999999999998889999999999
Q ss_pred CEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCccee--EcCCCCcCccccceEec
Q 046398 354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLIL--QVNPNWVPPFQLKTLLL 431 (794)
Q Consensus 354 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L 431 (794)
++|++++|.++ .+|..+. ++|++|++++|.+. .++...+.++++|+.|++++|.+.. ..+..+..+++|++|++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 99999999998 5666554 79999999999998 5666678999999999999998753 33333444444555555
Q ss_pred ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398 432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF 511 (794)
Q Consensus 432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 511 (794)
++|.++. +|. .+. ++|++|++++|++++..|..+. .+
T Consensus 179 ~~n~l~~-l~~---------------------------------------~~~--~~L~~L~l~~n~l~~~~~~~~~-~l 215 (330)
T 1xku_A 179 ADTNITT-IPQ---------------------------------------GLP--PSLTELHLDGNKITKVDAASLK-GL 215 (330)
T ss_dssp CSSCCCS-CCS---------------------------------------SCC--TTCSEEECTTSCCCEECTGGGT-TC
T ss_pred CCCcccc-CCc---------------------------------------ccc--ccCCEEECCCCcCCccCHHHhc-CC
Confidence 4444442 222 221 4455555555555433333332 34
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398 512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591 (794)
Q Consensus 512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 591 (794)
++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L----------------------------- 265 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI----------------------------- 265 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC-----------------------------
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc-----------------------------
Confidence 55555555555555444444445555555555555544 333333322222
Q ss_pred EEEeccchhhcccccceeEEEcCCCccccccChhhhc------ccCCCEEecccccccc--cCCccccccCCCCEEeCCC
Q 046398 592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY------LRGLQSLNLSHNIFTG--QIPENIGNLISIESLDFST 663 (794)
Q Consensus 592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~ 663 (794)
++|++++|++++..+..+.. ...|+.|++++|.+.. ..|..|..+.+++.++|++
T Consensus 266 -----------------~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 266 -----------------QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp -----------------CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred -----------------CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 44555555554433333322 2556667777776642 3455666677777777777
Q ss_pred Cc
Q 046398 664 NQ 665 (794)
Q Consensus 664 N~ 665 (794)
|+
T Consensus 329 N~ 330 (330)
T 1xku_A 329 YK 330 (330)
T ss_dssp --
T ss_pred cC
Confidence 64
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.8e-31 Score=306.53 Aligned_cols=435 Identities=15% Similarity=0.105 Sum_probs=236.9
Q ss_pred ecccccCCCCCCEEeCCCCCCC---CCCCCcccC------------CCCCCCEEEcCCCCCCCCCcccccCC--cccccc
Q 046398 109 VNPSLVDLKHLTHLDLSGNDFQ---GIRIPKYLG------------SLKNLRYLNLSGAEFAGIIPHQLGNL--SNLRCL 171 (794)
Q Consensus 109 ~~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~~~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L 171 (794)
++..+.++++|++|+|+++... + .+|..++ .+++|++|+|++|.+++..+..+... .+|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445678899999999886321 1 1333333 68899999999998887666666663 348888
Q ss_pred ccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCc----cccCCCCCCeEeeeccCCCCCCCccccCC
Q 046398 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG----WLSKFNHLEFLSLSSNGLQGTISSIGLEN 247 (794)
Q Consensus 172 ~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~i~~~~l~~ 247 (794)
++++|... ....++....++++|++|+|++|.+++.... ....+++|++|++++|.+++.-.
T Consensus 144 ~L~~~~~~--------~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~------ 209 (592)
T 3ogk_B 144 KLDKCSGF--------TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP------ 209 (592)
T ss_dssp EEESCEEE--------EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH------
T ss_pred ECcCCCCc--------CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH------
Confidence 88776521 0111222334567777888777776555322 23445556666555555431100
Q ss_pred CCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc---cccccccc
Q 046398 248 LTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS---GHLTSQLG 324 (794)
Q Consensus 248 l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~---~~~~~~l~ 324 (794)
+.++..+.++++|+.|++++|.+.+ ++..+..++ +|++|+++..... ...+..+.
T Consensus 210 ----------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 210 ----------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA-----NLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp ----------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT-----TCCEEEECBCCCCTTCTTSSSCCC
T ss_pred ----------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh-----HHHhhcccccccccchHHHHHHhh
Confidence 1122334445555555555554443 333333333 4455544432111 11222334
Q ss_pred CCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCE
Q 046398 325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404 (794)
Q Consensus 325 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 404 (794)
.+++|+.|+++++.. +.+|..+..+++|++|++++|.+.+......+..+++|+.
T Consensus 268 ~~~~L~~L~l~~~~~-------------------------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-------------------------NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp CCTTCCEEEETTCCT-------------------------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred ccccccccCccccch-------------------------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 444455554444322 1333344444444455544444332222112344445555
Q ss_pred EECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccC-----------CCCCCCcchhHHhccc
Q 046398 405 FSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISN-----------ARISDTIPRWFWNSIF 473 (794)
Q Consensus 405 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~p~~~~~~~~ 473 (794)
|+++ +.+... .++.....+++|++|++++ |.+++.
T Consensus 323 L~L~-~~~~~~-----------------------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~---------- 368 (592)
T 3ogk_B 323 LETR-NVIGDR-----------------------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR---------- 368 (592)
T ss_dssp EEEE-GGGHHH-----------------------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----------
T ss_pred Eecc-CccCHH-----------------------HHHHHHHhCCCCCEEEeecCccccccccccCccCHH----------
Confidence 5444 221110 0111122334455555552 333321
Q ss_pred cceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcc----ccccccc-----CCccccCCCCCCEEEcc
Q 046398 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR----SNKFDGF-----LPIQLCRLTSLQILDVA 544 (794)
Q Consensus 474 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~Ls 544 (794)
.++.....+++|++|+++.|++++..+..+...+++|+.|+++ .|.+++. ++..+..+++|++|+++
T Consensus 369 ----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 369 ----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp ----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred ----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 0111233467788888877777766666666557788888885 5566643 23335567888888887
Q ss_pred CCc--CcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc-c
Q 046398 545 NNS--LSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-E 621 (794)
Q Consensus 545 ~N~--l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ 621 (794)
+|. +++..+..+. ..+++|+.|++++|++++ .
T Consensus 445 ~~~~~l~~~~~~~~~---------------------------------------------~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIG---------------------------------------------QYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp CCGGGCCHHHHHHHH---------------------------------------------HSCTTCCEEEECSCCSSHHH
T ss_pred cCCCCccHHHHHHHH---------------------------------------------HhCccceEeeccCCCCCHHH
Confidence 543 4433222221 113445888888888876 3
Q ss_pred cChhhhcccCCCEEeccccccccc-CCccccccCCCCEEeCCCCcCcccCcccc-cCCCCCCEEeCcCC
Q 046398 622 IPMELTYLRGLQSLNLSHNIFTGQ-IPENIGNLISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSNN 688 (794)
Q Consensus 622 ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N 688 (794)
++..+..+++|++|+|++|.+++. ++..+..+++|+.|+|++|+++......+ ..++.+....+..+
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 455567788899999999988754 34445678899999999999887644333 35666666555544
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.2e-31 Score=302.67 Aligned_cols=380 Identities=14% Similarity=0.069 Sum_probs=245.6
Q ss_pred CCCCCCEEECcCCCCCCCCCccccC-CC-CCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCC
Q 046398 198 NLTSLRHLDLSANKFNSTTAGWLSK-FN-HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE 275 (794)
Q Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~ 275 (794)
++++|++|+|++|.+++..+..+.. ++ +|++|++++|.- +.... ++.....+++
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~---~~~~~---------------------l~~~~~~~~~ 165 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG---FTTDG---------------------LLSIVTHCRK 165 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE---EEHHH---------------------HHHHHHHCTT
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC---cCHHH---------------------HHHHHhhCCC
Confidence 5677777777777766655555544 23 377777766541 00001 1111223444
Q ss_pred CCEEEccCCCCCcch----HHHHHhhhhcCcCCccEEEeeccccc----ccccccccCCCCCCEEEccCCcCcCCCCCCc
Q 046398 276 LTSIDVSDVKLSQDL----SQVLDILSACGASALESLVFSSSQIS----GHLTSQLGQFKSLRTLSLDDNCISGPLPPAL 347 (794)
Q Consensus 276 L~~L~l~~~~l~~~~----~~~l~~l~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 347 (794)
|+.|++++|.+++.. +.....+ ++|++|++++|.++ +.++..+..+++|++|++++|.+.+ +|..+
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHN-----TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHC-----CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred CCEEECccccccCcchhHHHHHHhcC-----CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence 444444444443331 1122222 25555555555544 2233334456666777776666653 44555
Q ss_pred CCCCCCCEEEccCCccc---ccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCcc
Q 046398 348 GDLSSLTRLDLSRNMLN---GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF 424 (794)
Q Consensus 348 ~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 424 (794)
..+++|++|+++.+... +..+..+..+++|+.|+++++... .++. .+..+++|+.|++++|.+....
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~-------- 309 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETED-------- 309 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHH--------
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHH--------
Confidence 66667777777643222 234456677889999999886443 4544 5677889999998888643211
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEcc---------
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLG--------- 495 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls--------- 495 (794)
++..+..+++|++|+++ +.+.+. .++.....+++|++|+++
T Consensus 310 ---------------~~~~~~~~~~L~~L~L~-~~~~~~--------------~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 310 ---------------HCTLIQKCPNLEVLETR-NVIGDR--------------GLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp ---------------HHHHHTTCTTCCEEEEE-GGGHHH--------------HHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred ---------------HHHHHHhCcCCCEEecc-CccCHH--------------HHHHHHHhCCCCCEEEeecCccccccc
Confidence 12235678899999999 443321 233344578899999999
Q ss_pred --CCcccccCChhhhhcCCCCcEEEcccccccccCCccccC-CCCCCEEEcc----CCcCcccC-----Cchhhcccccc
Q 046398 496 --DNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCR-LTSLQILDVA----NNSLSGTM-----PGCVNNFSAMA 563 (794)
Q Consensus 496 --~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~~-----p~~~~~l~~L~ 563 (794)
.|.+++.....+...+++|+.|+++.|++++..+..+.. +++|+.|+++ .|.+++.. +..+.+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~----- 434 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG----- 434 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-----
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-----
Confidence 466765444444557999999999999998877777765 8999999997 66776532 222222
Q ss_pred ccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCC--ccccccChhhhc-ccCCCEEecccc
Q 046398 564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN--NFSGEIPMELTY-LRGLQSLNLSHN 640 (794)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N--~l~~~ip~~l~~-l~~L~~L~Ls~N 640 (794)
+++|+.|++++| .+++..+..+.. +++|++|+|++|
T Consensus 435 -----------------------------------------~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 435 -----------------------------------------CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp -----------------------------------------CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred -----------------------------------------CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 344588899754 377766666654 899999999999
Q ss_pred cccc-cCCccccccCCCCEEeCCCCcCccc-CcccccCCCCCCEEeCcCCccccc
Q 046398 641 IFTG-QIPENIGNLISIESLDFSTNQLSSK-ISQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 641 ~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
++++ .++..+..+++|+.|+|++|++++. ++.....+++|++|++++|++++.
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9986 4455668899999999999998765 445556899999999999998865
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=259.31 Aligned_cols=261 Identities=21% Similarity=0.306 Sum_probs=188.7
Q ss_pred ecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccc
Q 046398 109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWL 188 (794)
Q Consensus 109 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 188 (794)
+|..+. ++|++|++++|++++. .+..+..+++|++|++++|++++..|..|+++++|++|++++|.+.
T Consensus 46 iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------- 113 (353)
T 2z80_A 46 IPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--------- 113 (353)
T ss_dssp CCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS---------
T ss_pred cccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC---------
Confidence 444443 4899999999999864 3447899999999999999999888888999999999999988754
Q ss_pred ccCCCCc-cCCCCCCCEEECcCCCCCCCCC-ccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC
Q 046398 189 SGQIPNR-LGNLTSLRHLDLSANKFNSTTA-GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI 266 (794)
Q Consensus 189 ~~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~ 266 (794)
.+|.. +.++++|++|++++|++++..+ ..+.++++|++|++++|...+.++...+.++++|++|+++ ++.+.+..
T Consensus 114 --~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~ 190 (353)
T 2z80_A 114 --NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID-ASDLQSYE 190 (353)
T ss_dssp --SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEEC
T ss_pred --cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC-CCCcCccC
Confidence 45544 8899999999999999987766 6789999999999999953335554478899999999999 66788888
Q ss_pred chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccccccccc---CCCCCCEEEccCCcCcC--
Q 046398 267 PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLG---QFKSLRTLSLDDNCISG-- 341 (794)
Q Consensus 267 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~-- 341 (794)
|..+..+++|+.|++++|.+.......+..++ +|++|++++|.+++..+..+. ..+.++.++++++.+++
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-----SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-----TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcc-----cccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 88899999999999999988654444444444 888888888888775544332 23455566665555543
Q ss_pred --CCCCCcCCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEeccCcccccc
Q 046398 342 --PLPPALGDLSSLTRLDLSRNMLNGSIPLS-LGKISHLEYLDLSNNKMNGT 390 (794)
Q Consensus 342 --~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ 390 (794)
.+|.++..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 13344455555555555555555 33333 34555555555555555543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.7e-28 Score=258.02 Aligned_cols=279 Identities=20% Similarity=0.260 Sum_probs=197.8
Q ss_pred CCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEE
Q 046398 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWF 405 (794)
Q Consensus 326 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 405 (794)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++. +...+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEE
Confidence 445556777777776 4555443 4677777777777755555667777777777777776633 22245555555555
Q ss_pred ECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCc--cc
Q 046398 406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPE--SF 483 (794)
Q Consensus 406 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~--~l 483 (794)
++++| .+++..+..+..+++|++|++++|++++ +|. .+
T Consensus 106 ~Ls~n------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------l~~~~~~ 145 (353)
T 2z80_A 106 DLSYN------------------------YLSNLSSSWFKPLSSLTFLNLLGNPYKT----------------LGETSLF 145 (353)
T ss_dssp ECCSS------------------------CCSSCCHHHHTTCTTCSEEECTTCCCSS----------------SCSSCSC
T ss_pred ECCCC------------------------cCCcCCHhHhCCCccCCEEECCCCCCcc----------------cCchhhh
Confidence 55555 4444444457778888888888888775 333 67
Q ss_pred CCCCCCCEEEccCCc-ccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccc
Q 046398 484 KNFSNLEVLNLGDNE-FVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAM 562 (794)
Q Consensus 484 ~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 562 (794)
..+++|++|++++|+ +. .++...+..+++|+.|++++|++++..|..+..+++|++|++++|++....+..+..
T Consensus 146 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---- 220 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV---- 220 (353)
T ss_dssp TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH----
T ss_pred ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh----
Confidence 788888888888884 54 454333346888889999999888888888888889999999988875322222222
Q ss_pred cccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhh---cccCCCEEeccc
Q 046398 563 ATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT---YLRGLQSLNLSH 639 (794)
Q Consensus 563 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~ 639 (794)
++.|+.|++++|++++..+..+. ....++.++|++
T Consensus 221 ------------------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 221 ------------------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp ------------------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ------------------------------------------cccccEEECCCCccccccccccccccccchhhcccccc
Confidence 34558889999998876555443 356788888888
Q ss_pred ccccc----cCCccccccCCCCEEeCCCCcCcccCccc-ccCCCCCCEEeCcCCcccccCCC
Q 046398 640 NIFTG----QIPENIGNLISIESLDFSTNQLSSKISQS-MSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 640 N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
+.+++ .+|+.+.++++|+.|++++|+++. +|.. +..+++|++|++++|++++.+|.
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 88876 478889999999999999999995 5554 68999999999999999998874
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3e-27 Score=248.56 Aligned_cols=254 Identities=22% Similarity=0.266 Sum_probs=168.4
Q ss_pred CEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcC
Q 046398 330 RTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409 (794)
Q Consensus 330 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~ 409 (794)
+.++.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+...-
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------------------ 68 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG------------------ 68 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE------------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc------------------
Confidence 45666666665 3444332 46666666666666333334566666666666666654210
Q ss_pred CcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCC
Q 046398 410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNL 489 (794)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L 489 (794)
..+..+..+++|++|++++|.+++ +|..+..+++|
T Consensus 69 -----------------------------~~~~~~~~~~~L~~L~Ls~n~i~~----------------l~~~~~~l~~L 103 (306)
T 2z66_A 69 -----------------------------CCSQSDFGTTSLKYLDLSFNGVIT----------------MSSNFLGLEQL 103 (306)
T ss_dssp -----------------------------EEEHHHHSCSCCCEEECCSCSEEE----------------EEEEEETCTTC
T ss_pred -----------------------------CcccccccccccCEEECCCCcccc----------------ChhhcCCCCCC
Confidence 001112234455555555555442 34445566777
Q ss_pred CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccccccc
Q 046398 490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMATIDSS 568 (794)
Q Consensus 490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~ 568 (794)
++|++++|++++..+...+..+++|++|++++|++.+..+..+..+++|++|++++|.+++ .+|..+..+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~------- 176 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN------- 176 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT-------
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC-------
Confidence 7777777777633221223357777777777777777777777777888888888887765 45555544433
Q ss_pred cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398 569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE 648 (794)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 648 (794)
|+.|++++|++++..|..+..+++|++|+|++|++++..+.
T Consensus 177 ---------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 177 ---------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ---------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ---------------------------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 37788888888877778888888888888888888876666
Q ss_pred cccccCCCCEEeCCCCcCcccCcccccCCC-CCCEEeCcCCcccccCC
Q 046398 649 NIGNLISIESLDFSTNQLSSKISQSMSSLS-FLNHLNVSNNLLTGKIP 695 (794)
Q Consensus 649 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP 695 (794)
.+..+++|+.|+|++|++++..|..+..++ +|++|++++|++++..+
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 788888888888888888888888888874 88888888888887643
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6e-27 Score=246.23 Aligned_cols=278 Identities=23% Similarity=0.289 Sum_probs=180.8
Q ss_pred ccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCccccc--CCccccCCCCCCeEec
Q 046398 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGS--IPLSLGKISHLEYLDL 382 (794)
Q Consensus 305 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L 382 (794)
-+.++.+++.++.. |..+ .++|++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46789999888854 4433 37899999999999965556689999999999999999733 3566777889999999
Q ss_pred cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCC
Q 046398 383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462 (794)
Q Consensus 383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 462 (794)
++|.+. .++. .+..+++|+.|++++|.+.. ..+
T Consensus 86 s~n~i~-~l~~-~~~~l~~L~~L~l~~n~l~~------------------------~~~--------------------- 118 (306)
T 2z66_A 86 SFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQ------------------------MSE--------------------- 118 (306)
T ss_dssp CSCSEE-EEEE-EEETCTTCCEEECTTSEEES------------------------STT---------------------
T ss_pred CCCccc-cChh-hcCCCCCCCEEECCCCcccc------------------------ccc---------------------
Confidence 998886 3433 24455555555555544321 111
Q ss_pred CcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccc-cCCccccCCCCCCEE
Q 046398 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDG-FLPIQLCRLTSLQIL 541 (794)
Q Consensus 463 ~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 541 (794)
...+..+++|++|++++|++.+..+..+. .+++|++|++++|.+++ ..|..+..+++|++|
T Consensus 119 -----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 119 -----------------FSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp -----------------TTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred -----------------chhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 02344455555555555555544443333 45666666666666654 455666666777777
Q ss_pred EccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc
Q 046398 542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE 621 (794)
Q Consensus 542 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 621 (794)
++++|++++..|..+..+++| +.|++++|++++.
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~~~ 214 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSL----------------------------------------------QVLNMSHNNFFSL 214 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEECTTSCCSBC
T ss_pred ECCCCCcCCcCHHHhcCCCCC----------------------------------------------CEEECCCCccCcc
Confidence 777777766555555444433 6667777777766
Q ss_pred cChhhhcccCCCEEecccccccccCCccccccC-CCCEEeCCCCcCcccCc--ccccCCCCCCEEeCcCCcccccCCC
Q 046398 622 IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI-SIESLDFSTNQLSSKIS--QSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 622 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
.+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++..+ ....-+...+.+.+..+.+.+..|.
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 666677777888888888888877777777774 78888888888876432 1122233344555566666666664
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.8e-27 Score=247.51 Aligned_cols=227 Identities=18% Similarity=0.254 Sum_probs=161.7
Q ss_pred CCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEE
Q 046398 374 ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVL 453 (794)
Q Consensus 374 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 453 (794)
.++++.|++++|.+. .+|. .+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~n~l~-------------------------~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDAAGLM-------------------------ELPDTMQQFAGLETL 132 (328)
T ss_dssp STTCCEEEEESSCCS-SCCS-CGGGGTTCSEEEEESSCCC-------------------------CCCSCGGGGTTCSEE
T ss_pred ccceeEEEccCCCch-hcCh-hhhhCCCCCEEECCCCCcc-------------------------chhHHHhccCCCCEE
Confidence 366777777777776 5554 3444566666655555543 445555666666666
Q ss_pred eccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhh--------hcCCCCcEEEccccccc
Q 046398 454 DISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG--------EGFTSLLILILRSNKFD 525 (794)
Q Consensus 454 ~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~--------~~l~~L~~L~L~~n~l~ 525 (794)
++++|+++. +|..+..+++|++|++++|++.+.+|..+. .++++|++|++++|+++
T Consensus 133 ~Ls~n~l~~----------------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 133 TLARNPLRA----------------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEESCCCCC----------------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred ECCCCcccc----------------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 666666652 455566666777777777666666666543 13777888888888877
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccc
Q 046398 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL 605 (794)
Q Consensus 526 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 605 (794)
.+|..+..+++|++|++++|++++ +|..+..+++|
T Consensus 197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L------------------------------------------- 231 (328)
T 4fcg_A 197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL------------------------------------------- 231 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC-------------------------------------------
T ss_pred -cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC-------------------------------------------
Confidence 667777788888888888888774 44445444433
Q ss_pred cceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeC
Q 046398 606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV 685 (794)
Q Consensus 606 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 685 (794)
+.|++++|++.+.+|..++.+++|++|+|++|.+.+.+|..++++++|+.|+|++|++.+.+|..+..+++|+.+++
T Consensus 232 ---~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 232 ---EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp ---CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred ---CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 77888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCccc
Q 046398 686 SNNLLT 691 (794)
Q Consensus 686 s~N~l~ 691 (794)
..|.+.
T Consensus 309 ~~~~~~ 314 (328)
T 4fcg_A 309 PPHLQA 314 (328)
T ss_dssp CGGGSC
T ss_pred CHHHHH
Confidence 866543
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.3e-27 Score=252.37 Aligned_cols=267 Identities=20% Similarity=0.202 Sum_probs=171.0
Q ss_pred ccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046398 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN 384 (794)
Q Consensus 305 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 384 (794)
++..+++.+.+...+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444445555544444444455667777777777666555566666667777777666664433 56666666666666
Q ss_pred cccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCc
Q 046398 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTI 464 (794)
Q Consensus 385 N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 464 (794)
|++++ ++ ..+ +|++|++++|++++.
T Consensus 90 n~l~~-l~-----~~~------------------------------------------------~L~~L~l~~n~l~~~- 114 (317)
T 3o53_A 90 NYVQE-LL-----VGP------------------------------------------------SIETLHAANNNISRV- 114 (317)
T ss_dssp SEEEE-EE-----ECT------------------------------------------------TCCEEECCSSCCSEE-
T ss_pred Ccccc-cc-----CCC------------------------------------------------CcCEEECCCCccCCc-
Confidence 66552 11 112 344444444444331
Q ss_pred chhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccc-cCCCCCCEEEc
Q 046398 465 PRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQL-CRLTSLQILDV 543 (794)
Q Consensus 465 p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L 543 (794)
.+ ..+++|++|++++|++++..+..+. .+++|++|++++|++++..+..+ ..+++|++|++
T Consensus 115 --------------~~---~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 115 --------------SC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp --------------EE---CCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred --------------Cc---cccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 01 1234566666666666533232332 46666666666666666555554 35677777777
Q ss_pred cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398 544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623 (794)
Q Consensus 544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip 623 (794)
++|++++..+.. .++.|+.|++++|++++ +|
T Consensus 177 ~~N~l~~~~~~~------------------------------------------------~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 177 QYNFIYDVKGQV------------------------------------------------VFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp TTSCCCEEECCC------------------------------------------------CCTTCCEEECCSSCCCE-EC
T ss_pred CCCcCccccccc------------------------------------------------ccccCCEEECCCCcCCc-ch
Confidence 777776431100 13345788888888874 55
Q ss_pred hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc-ccCcccccCCCCCCEEeCc-CCcccccCCC
Q 046398 624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS-SKISQSMSSLSFLNHLNVS-NNLLTGKIPS 696 (794)
Q Consensus 624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~iP~ 696 (794)
..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 56888999999999999999 67888999999999999999999 7888889999999999998 4567777664
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.7e-25 Score=254.53 Aligned_cols=263 Identities=25% Similarity=0.301 Sum_probs=168.7
Q ss_pred CCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046398 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL 382 (794)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 382 (794)
..++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 36788888888887 4455443 68888888888887 4454 4677888888888877 4554 5678888888
Q ss_pred cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCC
Q 046398 383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462 (794)
Q Consensus 383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 462 (794)
++|++++ ++. .+++|+.|++++|.++. +|.. +++|++|++++|++++
T Consensus 109 s~N~l~~-l~~----~l~~L~~L~L~~N~l~~-------------------------lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 109 FSNPLTH-LPA----LPSGLCKLWIFGNQLTS-------------------------LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CSCCCCC-CCC----CCTTCCEEECCSSCCSC-------------------------CCCC---CTTCCEEECCSSCCSC
T ss_pred cCCcCCC-CCC----CCCCcCEEECCCCCCCc-------------------------CCCC---CCCCCEEECcCCcCCC
Confidence 8887763 333 44566666666665442 2221 2566666666666654
Q ss_pred CcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEE
Q 046398 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILD 542 (794)
Q Consensus 463 ~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 542 (794)
+|. .+++|+.|++++|+++ .+| ..+++|+.|++++|++++ +|. .+++|+.|+
T Consensus 156 ----------------l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~ 207 (622)
T 3g06_A 156 ----------------LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLW 207 (622)
T ss_dssp ----------------CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred ----------------cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEE
Confidence 222 2356667777777766 455 135667777777777664 332 235677777
Q ss_pred ccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc
Q 046398 543 VANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI 622 (794)
Q Consensus 543 Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i 622 (794)
+++|.++. +|.. +++|+.|++++|++++ +
T Consensus 208 L~~N~l~~-l~~~-------------------------------------------------~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 208 AYNNRLTS-LPAL-------------------------------------------------PSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp CCSSCCSS-CCCC-------------------------------------------------CTTCCEEECCSSCCSC-C
T ss_pred CcCCcccc-cCCC-------------------------------------------------CCCCCEEEccCCccCc-C
Confidence 77776652 2211 1234667777777764 4
Q ss_pred ChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398 623 PMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 623 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 237 p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 5 34567777777777777 5555 4567777777777777 5666777777777777777777776664
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.9e-25 Score=251.65 Aligned_cols=258 Identities=27% Similarity=0.332 Sum_probs=201.9
Q ss_pred CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEE
Q 046398 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS 406 (794)
Q Consensus 327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 406 (794)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|+.|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 46899999999998 6777665 79999999999998 5665 5689999999999987 4554 456666666
Q ss_pred CcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC
Q 046398 407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF 486 (794)
Q Consensus 407 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l 486 (794)
+++|.++ + +|. .+++|+.|++++|++++ +|.. +
T Consensus 108 Ls~N~l~------------------------~-l~~---~l~~L~~L~L~~N~l~~----------------lp~~---l 140 (622)
T 3g06_A 108 IFSNPLT------------------------H-LPA---LPSGLCKLWIFGNQLTS----------------LPVL---P 140 (622)
T ss_dssp ECSCCCC------------------------C-CCC---CCTTCCEEECCSSCCSC----------------CCCC---C
T ss_pred CcCCcCC------------------------C-CCC---CCCCcCEEECCCCCCCc----------------CCCC---C
Confidence 6666543 2 222 46789999999999886 4443 4
Q ss_pred CCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398 487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566 (794)
Q Consensus 487 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 566 (794)
++|++|++++|+++ .+|. .+++|+.|++++|++++ +| ..+++|+.|++++|++++ +|..
T Consensus 141 ~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~----------- 199 (622)
T 3g06_A 141 PGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL----------- 199 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC-----------
T ss_pred CCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc-----------
Confidence 89999999999998 5664 36789999999999996 45 457899999999999984 3321
Q ss_pred cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC
Q 046398 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI 646 (794)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 646 (794)
++.|+.|++++|.++ .+|.. +++|+.|+|++|++++ +
T Consensus 200 --------------------------------------~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 200 --------------------------------------PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp --------------------------------------CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-C
T ss_pred --------------------------------------cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-C
Confidence 234588999999998 56643 5889999999999994 7
Q ss_pred CccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCcCC
Q 046398 647 PENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCG 715 (794)
Q Consensus 647 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~lcg 715 (794)
| ..+++|+.|+|++|+++. +|. .+++|+.|++++|+++ .||.. ..+..+....+.+|.+.|
T Consensus 237 p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 7 456899999999999995 565 6789999999999999 67753 455566666677876554
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-25 Score=249.38 Aligned_cols=249 Identities=22% Similarity=0.240 Sum_probs=164.0
Q ss_pred CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccC
Q 046398 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197 (794)
Q Consensus 118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~ 197 (794)
..+.++.++..++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+. +..|..|.
T Consensus 55 ~~~~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----------~~~~~~~~ 120 (452)
T 3zyi_A 55 QFSKVVCTRRGLS--EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR----------QIEVGAFN 120 (452)
T ss_dssp SSCEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----------EECTTTTT
T ss_pred CCcEEEECCCCcC--ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC----------CcChhhcc
Confidence 3567777777777 4676554 57888888888888777788888888888888877643 34456778
Q ss_pred CCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCC
Q 046398 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT 277 (794)
Q Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~ 277 (794)
++++|++|+|++|+++...+..+..+++|++|++++|.++ .++...+.++++|++|+++.++.+....+..+..+++|+
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 8888888888888888877777888888888888888887 444447778888888888754555444444566777777
Q ss_pred EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEE
Q 046398 278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLD 357 (794)
Q Consensus 278 ~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 357 (794)
.|++++|.+++.. .+ ..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+.++++|++|+
T Consensus 200 ~L~L~~n~l~~~~--~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 200 YLNLGMCNIKDMP--NL-----TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp EEECTTSCCSSCC--CC-----TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCcccccc--cc-----cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 7777777665431 11 1223555555555555555555555555555555555555555555555555555555
Q ss_pred ccCCcccccCCccccCCCCCCeEeccCcccc
Q 046398 358 LSRNMLNGSIPLSLGKISHLEYLDLSNNKMN 388 (794)
Q Consensus 358 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 388 (794)
|++|++++..+..+..+++|++|++++|.+.
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 5555555444444455555555555555543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.8e-25 Score=244.79 Aligned_cols=250 Identities=21% Similarity=0.247 Sum_probs=181.9
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL 431 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 431 (794)
..+.++.+++.++ .+|..+. ++++.|+|++|++.+ ++...|.++++|+.|++++|.+...
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i---------------- 103 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTI---------------- 103 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEE----------------
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCcc----------------
Confidence 3567788887777 5666554 678888888888873 4434677777777777777665543
Q ss_pred ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398 432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF 511 (794)
Q Consensus 432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 511 (794)
.+..+..+++|++|++++|++++. .+..+..+++|++|++++|+++ .+|...+..+
T Consensus 104 --------~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l 159 (440)
T 3zyj_A 104 --------EIGAFNGLANLNTLELFDNRLTTI---------------PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159 (440)
T ss_dssp --------CGGGGTTCSSCCEEECCSSCCSSC---------------CTTTSCSCSSCCEEECCSCCCC-EECTTTTTTC
T ss_pred --------ChhhccCCccCCEEECCCCcCCee---------------CHhHhhccccCceeeCCCCccc-ccCHHHhhhC
Confidence 344566667777777777776641 2335667777777777777776 4555444467
Q ss_pred CCCcEEEccccc-ccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceee
Q 046398 512 TSLLILILRSNK-FDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA 590 (794)
Q Consensus 512 ~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 590 (794)
++|+.|++++|+ +....+..|..+++|++|++++|+++ .+|. +..
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~-------------------------------- 205 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP-------------------------------- 205 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT--------------------------------
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC--------------------------------
Confidence 777888887744 33333446778888888888888876 3331 222
Q ss_pred EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC
Q 046398 591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI 670 (794)
Q Consensus 591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 670 (794)
+++|+.||+++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..
T Consensus 206 --------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 206 --------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp --------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred --------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 334588888888888888888888999999999999999888888999999999999999999888
Q ss_pred cccccCCCCCCEEeCcCCccccc
Q 046398 671 SQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 671 p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
+..+..+++|+.|++++|++...
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEECS
T ss_pred hhHhccccCCCEEEcCCCCccCC
Confidence 88888899999999999988754
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.5e-25 Score=232.87 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=107.7
Q ss_pred CcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcc
Q 046398 480 PESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF 559 (794)
Q Consensus 480 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 559 (794)
|..+..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 34455556666666666666533333332 46666666666666665555556667777777777777665444444443
Q ss_pred ccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccc
Q 046398 560 SAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSH 639 (794)
Q Consensus 560 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 639 (794)
++| +.|++++|++++..|..+..+++|+.|++++
T Consensus 177 ~~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 177 HSL----------------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp TTC----------------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccc----------------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 333 6677777777777777777777888888888
Q ss_pred ccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC
Q 046398 640 NIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS 697 (794)
Q Consensus 640 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 697 (794)
|++++..++.+..+++|+.|++++|++....+.. .-...++.+..+.+.+.+..|..
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 8887655566777888888888888877644421 11233455557777787777753
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.2e-25 Score=244.60 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=62.3
Q ss_pred ceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398 607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686 (794)
Q Consensus 607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 686 (794)
+|+.|++++|++++..|..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 34666777777766667777777777777777777776667777777777777777777776666667777777777777
Q ss_pred CCccccc
Q 046398 687 NNLLTGK 693 (794)
Q Consensus 687 ~N~l~g~ 693 (794)
+|++...
T Consensus 299 ~Np~~Cd 305 (452)
T 3zyi_A 299 HNPWNCD 305 (452)
T ss_dssp SSCEECS
T ss_pred CCCcCCC
Confidence 7776543
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.9e-27 Score=248.97 Aligned_cols=209 Identities=21% Similarity=0.247 Sum_probs=145.3
Q ss_pred ccccceEecccccCCCCCCccc--CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccc
Q 046398 423 PFQLKTLLLMSCHLGPQFPSWL--HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFV 500 (794)
Q Consensus 423 ~~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 500 (794)
+++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+... +. ..+++|++|++++|+++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l--------~~--~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL--------QQ--WLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH--------HT--TCCTTCCEEEEESCSCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH--------HH--hhcCCCcEEEeeCCCCc
Confidence 3455555555555555556554 6777788888888877764 3322210 00 01277888888888887
Q ss_pred ccCChhhhhcCCCCcEEEccccccccc--CCccc--cCCCCCCEEEccCCcCccc--CCchhhccccccccccccCCCCc
Q 046398 501 GKIPTWMGEGFTSLLILILRSNKFDGF--LPIQL--CRLTSLQILDVANNSLSGT--MPGCVNNFSAMATIDSSHQSNAM 574 (794)
Q Consensus 501 ~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~l~~~~~~~~~ 574 (794)
+..|..+. .+++|++|++++|++.+. .|..+ ..+++|++|++++|++++. ++..+
T Consensus 163 ~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------ 223 (312)
T 1wwl_A 163 NFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL------------------ 223 (312)
T ss_dssp CCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH------------------
T ss_pred cchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH------------------
Confidence 54445544 678888888888887654 23333 6788888888888887621 11110
Q ss_pred ccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC-hhhhcccCCCEEecccccccccCCcccccc
Q 046398 575 SYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP-MELTYLRGLQSLNLSHNIFTGQIPENIGNL 653 (794)
Q Consensus 575 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 653 (794)
...++.|+.||+++|++++.+| ..+..+++|++|+|++|+++ .+|..+.
T Consensus 224 ---------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 224 ---------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp ---------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred ---------------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 1123455888999999988775 45667889999999999998 7888777
Q ss_pred CCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccccc
Q 046398 654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 654 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
++|+.|||++|++++. |. +..+++|++|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8899999999999876 65 88899999999999998864
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.7e-25 Score=230.96 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=78.1
Q ss_pred cccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccc
Q 046398 481 ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFS 560 (794)
Q Consensus 481 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 560 (794)
..+..+++|++|++++|+++ .++...+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|..+.+++
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 33445555555555555554 23332222455555555555555544444555566666666666666555555444433
Q ss_pred cccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccc
Q 046398 561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640 (794)
Q Consensus 561 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N 640 (794)
+| +.|++++|++++..+..+..+++|+.|+|++|
T Consensus 202 ~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 202 RL----------------------------------------------MTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TC----------------------------------------------CEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cc----------------------------------------------cEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 33 55666666666544455666666666666666
Q ss_pred cccccCCccccccCCCCEEeCCCCcCcccCcccccC
Q 046398 641 IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSS 676 (794)
Q Consensus 641 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 676 (794)
.+....+. ......++.+..+.+.+....|+.+.+
T Consensus 236 ~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 236 PWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp CEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred CccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence 66543221 111223444445666666666665543
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=244.14 Aligned_cols=245 Identities=21% Similarity=0.255 Sum_probs=122.9
Q ss_pred EEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCC
Q 046398 121 HLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLT 200 (794)
Q Consensus 121 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~ 200 (794)
.++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+. +..+..|.+++
T Consensus 47 ~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----------~i~~~~~~~l~ 112 (440)
T 3zyj_A 47 KVICVRKNLR--EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR----------TIEIGAFNGLA 112 (440)
T ss_dssp EEECCSCCCS--SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC----------EECGGGGTTCS
T ss_pred EEEeCCCCcC--cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC----------ccChhhccCCc
Confidence 4455555555 3454443 45566666666655555555555666666666555432 22234555566
Q ss_pred CCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEE
Q 046398 201 SLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSID 280 (794)
Q Consensus 201 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~ 280 (794)
+|++|+|++|+++...+..|..+++|++|++++|.++ .++...+.++++|++|+++.++.+....+..+.++++|+.|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 6666666666666555555666666666666666655 333335556666666666633333333333455555555555
Q ss_pred ccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccC
Q 046398 281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSR 360 (794)
Q Consensus 281 l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 360 (794)
+++|.++.. |. + ..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 192 L~~n~l~~~-~~-~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 192 LAMCNLREI-PN-L-----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CTTSCCSSC-CC-C-----TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCcCccc-cc-c-----CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 555554421 10 0 1122444444444444444444444444444444444444444444444444444444444
Q ss_pred CcccccCCccccCCCCCCeEeccCccc
Q 046398 361 NMLNGSIPLSLGKISHLEYLDLSNNKM 387 (794)
Q Consensus 361 n~l~~~~p~~l~~l~~L~~L~Ls~N~l 387 (794)
|++++..+..+..+++|+.|++++|.+
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCccChhHhccccCCCEEEcCCCCc
Confidence 444433333444444444444444443
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.1e-28 Score=278.78 Aligned_cols=162 Identities=12% Similarity=0.043 Sum_probs=99.6
Q ss_pred CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcc--c----cccccc-----CCccccCCCCCCEEEccCCcCcccCC
Q 046398 485 NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR--S----NKFDGF-----LPIQLCRLTSLQILDVANNSLSGTMP 553 (794)
Q Consensus 485 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p 553 (794)
.+++|+.|+++.|++++..+..+...+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 367777777777777665555555457777777777 3 344421 111245667777777765 4443222
Q ss_pred chhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhh-hcccCC
Q 046398 554 GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMEL-TYLRGL 632 (794)
Q Consensus 554 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L 632 (794)
..+.. .+++|+.|++++|.+++..+..+ ..+++|
T Consensus 449 ~~l~~---------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 449 EYIGT---------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp HHHHH---------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred HHHHH---------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 22211 13445788888888776655555 567888
Q ss_pred CEEecccccccccCCc-cccccCCCCEEeCCCCcCcccCcccc-cCCCCCCEEeCcCCcccc
Q 046398 633 QSLNLSHNIFTGQIPE-NIGNLISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSNNLLTG 692 (794)
Q Consensus 633 ~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g 692 (794)
++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+..+.-..
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 8888888888654443 34457888888888888865444444 456677666666554433
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.1e-27 Score=250.05 Aligned_cols=247 Identities=19% Similarity=0.255 Sum_probs=151.4
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCC-CCCCccccc-------CCccccccccCccccccccccc
Q 046398 114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEF-AGIIPHQLG-------NLSNLRCLDLSWSEYALQVHSF 185 (794)
Q Consensus 114 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~~~~~~~~~~~ 185 (794)
+..++|++|++++|.+ .+|..+... |++|+|++|.+ ...+|..+. ++++|++|++++|.
T Consensus 40 ~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------- 106 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-------- 106 (312)
T ss_dssp EEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB--------
T ss_pred ccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc--------
Confidence 4455666677777766 255554433 66677777766 334555554 56777777776665
Q ss_pred cccccCCCCcc--CCCCCCCEEECcCCCCCCCCCccccCC-----CCCCeEeeeccCCCCCCCccccCCCCCCcEEEccC
Q 046398 186 SWLSGQIPNRL--GNLTSLRHLDLSANKFNSTTAGWLSKF-----NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258 (794)
Q Consensus 186 ~~~~~~lp~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~ 258 (794)
+.+.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+. .++++++|++|+++
T Consensus 107 --l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls- 181 (312)
T 1wwl_A 107 --VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLS- 181 (312)
T ss_dssp --CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECC-
T ss_pred --ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECC-
Confidence 345566655 6777777777777777776 5556655 7777777777777654444 66777777777777
Q ss_pred CCCCCCC--Cchhh--hccCCCCEEEccCCCCCcc--hH-HHHHhhhhcCcCCccEEEeeccccccccc-ccccCCCCCC
Q 046398 259 NFELGGP--IPTSF--VRLCELTSIDVSDVKLSQD--LS-QVLDILSACGASALESLVFSSSQISGHLT-SQLGQFKSLR 330 (794)
Q Consensus 259 ~~~~~~~--~~~~l--~~l~~L~~L~l~~~~l~~~--~~-~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 330 (794)
+|.+.+. .+..+ ..+++|+.|++++|.+++. ++ ..+..++ +|++|++++|.+++..| ..+..+++|+
T Consensus 182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-----QLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-----CCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-----CCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 4444433 23333 6677777777777777632 11 1112222 66666666666666553 3444556666
Q ss_pred EEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046398 331 TLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN 388 (794)
Q Consensus 331 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 388 (794)
+|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 6666666666 4555444 5666666666666643 43 566666666666666654
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-26 Score=242.99 Aligned_cols=271 Identities=17% Similarity=0.191 Sum_probs=203.2
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL 431 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 431 (794)
+++..+++.+.+.......+..+++|++|++++|.+++ ++...+..+++|+.|++++|.+.+..
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------- 74 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL--------------- 74 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEE---------------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcch---------------
Confidence 34556677777664444555566788888888888874 44447788888888888888765432
Q ss_pred ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398 432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF 511 (794)
Q Consensus 432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 511 (794)
+ +..+++|++|++++|++++ ++ ..++|++|++++|++++..+. .+
T Consensus 75 ---------~--~~~l~~L~~L~Ls~n~l~~----------------l~----~~~~L~~L~l~~n~l~~~~~~----~~ 119 (317)
T 3o53_A 75 ---------D--LESLSTLRTLDLNNNYVQE----------------LL----VGPSIETLHAANNNISRVSCS----RG 119 (317)
T ss_dssp ---------E--ETTCTTCCEEECCSSEEEE----------------EE----ECTTCCEEECCSSCCSEEEEC----CC
T ss_pred ---------h--hhhcCCCCEEECcCCcccc----------------cc----CCCCcCEEECCCCccCCcCcc----cc
Confidence 1 5667889999999998764 22 338999999999999854332 47
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398 512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591 (794)
Q Consensus 512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 591 (794)
++|+.|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------------------- 165 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA---------------------------------- 165 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG----------------------------------
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh----------------------------------
Confidence 8899999999999988888899999999999999999876655442
Q ss_pred EEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc
Q 046398 592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
..++.|+.|++++|++++. | ....+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +|
T Consensus 166 -----------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~ 230 (317)
T 3o53_A 166 -----------ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IE 230 (317)
T ss_dssp -----------GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred -----------hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hh
Confidence 1134459999999999865 3 3345899999999999999 466669999999999999999995 78
Q ss_pred ccccCCCCCCEEeCcCCccc-ccCCCC-CccCccCcccccCC-CcCCCCCCCCC
Q 046398 672 QSMSSLSFLNHLNVSNNLLT-GKIPSS-TQLQSFDASCFVGN-NLCGPPLPSCT 722 (794)
Q Consensus 672 ~~l~~l~~L~~L~ls~N~l~-g~iP~~-~~~~~~~~~~~~gn-~lcg~~~~~c~ 722 (794)
..+..+++|+.|++++|+++ +.+|.. ..+..+......++ .+.|.....|.
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccC
Confidence 88999999999999999999 555532 22233333334545 55555444443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-25 Score=248.83 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=112.3
Q ss_pred CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc-CCCCCCEEEccCCcCcccCCchhhccccccc
Q 046398 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC-RLTSLQILDVANNSLSGTMPGCVNNFSAMAT 564 (794)
Q Consensus 486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 564 (794)
+++|+.|++++|++++..|..+. .+++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++..+..
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--------- 188 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--------- 188 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC---------
T ss_pred cCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc---------
Confidence 46677777777777755555554 577788888888888777777665 6788888888888877542211
Q ss_pred cccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccc
Q 046398 565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG 644 (794)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 644 (794)
.++.|+.|++++|++++ +|+.+..+++|+.|+|++|.++
T Consensus 189 ---------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~- 227 (487)
T 3oja_A 189 ---------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227 (487)
T ss_dssp ---------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-
T ss_pred ---------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-
Confidence 13345788888888885 4445888889999999999988
Q ss_pred cCCccccccCCCCEEeCCCCcCc-ccCcccccCCCCCCEEeCc
Q 046398 645 QIPENIGNLISIESLDFSTNQLS-SKISQSMSSLSFLNHLNVS 686 (794)
Q Consensus 645 ~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 686 (794)
.+|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 228 ~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 47888888889999999999888 6677778888888777776
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=8.5e-27 Score=269.18 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=72.6
Q ss_pred ccccceeEEEcCCCccccccChhhhc-ccCCCEEecccccccccCCccc-cccCCCCEEeCCCCcCcccCcc-cccCCCC
Q 046398 603 SILNLVRIIDVSKNNFSGEIPMELTY-LRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQLSSKISQ-SMSSLSF 679 (794)
Q Consensus 603 ~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~ 679 (794)
..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3456789999987 777777777766 8999999999999987666555 6789999999999999765554 4456899
Q ss_pred CCEEeCcCCcccc
Q 046398 680 LNHLNVSNNLLTG 692 (794)
Q Consensus 680 L~~L~ls~N~l~g 692 (794)
|++|++++|+++.
T Consensus 508 L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 508 MRSLWMSSCSVSF 520 (594)
T ss_dssp SSEEEEESSCCBH
T ss_pred CCEEeeeCCCCCH
Confidence 9999999999853
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4.1e-23 Score=213.37 Aligned_cols=211 Identities=24% Similarity=0.272 Sum_probs=164.3
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 504 (794)
++++|++++|.+++..+..+..+++|++|++++|++++ ..+..+..+++|++|++++|++++..+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---------------IEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE---------------ECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc---------------cCHHHccCCcCCCEEECCCCccCccCh
Confidence 45566666666655555567777888888888887764 234567788888888888888875444
Q ss_pred hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCccc-CCchhhccccccccccccCCCCcccccccccc
Q 046398 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGT-MPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD 583 (794)
Q Consensus 505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 583 (794)
..+. .+++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+.++++|
T Consensus 94 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L--------------------- 151 (276)
T 2z62_A 94 GAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL--------------------- 151 (276)
T ss_dssp TTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------------
T ss_pred hhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------------
Confidence 4444 688888888888888877776788889999999999988763 56666655544
Q ss_pred cccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCC----EEecccccccccCCccccccCCCCEE
Q 046398 584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ----SLNLSHNIFTGQIPENIGNLISIESL 659 (794)
Q Consensus 584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~l~~L~~L 659 (794)
+.|++++|++++..+..+..+++|+ .|++++|++++..+..+ ...+|+.|
T Consensus 152 -------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L 205 (276)
T 2z62_A 152 -------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKEL 205 (276)
T ss_dssp -------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEE
T ss_pred -------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEE
Confidence 8889999999887777888887777 89999999996555544 44589999
Q ss_pred eCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCC
Q 046398 660 DFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSST 698 (794)
Q Consensus 660 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 698 (794)
++++|++++..+..+..+++|++|++++|++++..|...
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 999999998877788999999999999999999888643
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-24 Score=241.62 Aligned_cols=237 Identities=21% Similarity=0.199 Sum_probs=166.8
Q ss_pred CCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEE
Q 046398 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWF 405 (794)
Q Consensus 326 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 405 (794)
+++|++|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++ ++ ..++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE-----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC-----CCCCcCEE
Confidence 3467777777777766666666677777777777777665444 6666777777777776652 21 22455555
Q ss_pred ECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC
Q 046398 406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN 485 (794)
Q Consensus 406 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~ 485 (794)
++++|.+.+ ..+. .+++|+.|++++|.+++. .|..+..
T Consensus 105 ~L~~N~l~~------------------------~~~~---~l~~L~~L~L~~N~l~~~---------------~~~~~~~ 142 (487)
T 3oja_A 105 HAANNNISR------------------------VSCS---RGQGKKNIYLANNKITML---------------RDLDEGC 142 (487)
T ss_dssp ECCSSCCCC------------------------EEEC---CCSSCEEEECCSSCCCSG---------------GGBCGGG
T ss_pred ECcCCcCCC------------------------CCcc---ccCCCCEEECCCCCCCCC---------------CchhhcC
Confidence 555554433 2222 245677888888877652 4455667
Q ss_pred CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccc
Q 046398 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATI 565 (794)
Q Consensus 486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 565 (794)
+++|+.|++++|.+++..|..+...+++|+.|+|++|.+++.. ....+++|++|+|++|.+++..|. +..+++
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~---- 215 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAG---- 215 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTT----
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCC----
Confidence 7888888888888887777766656788888888888888663 244588899999999988865443 544443
Q ss_pred ccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccccc-c
Q 046398 566 DSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT-G 644 (794)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~ 644 (794)
|+.||+++|.+++ +|..+..+++|+.|++++|.++ +
T Consensus 216 ------------------------------------------L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 216 ------------------------------------------VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp ------------------------------------------CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred ------------------------------------------ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 3788899999884 7778888899999999999988 7
Q ss_pred cCCccccccCCCCEEeCC
Q 046398 645 QIPENIGNLISIESLDFS 662 (794)
Q Consensus 645 ~ip~~l~~l~~L~~L~Ls 662 (794)
.+|..+..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 778888888888888886
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.9e-22 Score=207.43 Aligned_cols=207 Identities=19% Similarity=0.259 Sum_probs=171.7
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 504 (794)
..+.++++++.++. +|..+. +++++|++++|++++. .+..+..+++|++|++++|+++ .+|
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~-~i~ 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSL---------------PSKAFHRLTKLRLLYLNDNKLQ-TLP 77 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCC---------------CTTSSSSCTTCCEEECCSSCCS-CCC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCee---------------CHHHhcCCCCCCEEECCCCccC-eeC
Confidence 35566666666653 444332 5789999999988762 3456888999999999999998 677
Q ss_pred hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC 584 (794)
Q Consensus 505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 584 (794)
...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------- 135 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL---------------------- 135 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC----------------------
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC----------------------
Confidence 7766678999999999999998777788899999999999999987777666655544
Q ss_pred ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398 585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664 (794)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 664 (794)
+.|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 136 ------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 136 ------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp ------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 88999999999776667899999999999999999777777999999999999999
Q ss_pred cCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398 665 QLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 665 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
++++..+..+..+++|+.|++++|++.+..+.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred cCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 99988888899999999999999999887653
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.9e-22 Score=207.51 Aligned_cols=218 Identities=23% Similarity=0.310 Sum_probs=134.8
Q ss_pred CCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccC
Q 046398 60 GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139 (794)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~ 139 (794)
.++|.|.|+.|.- .+.++.+++++. .++ .+|..+. +++++|+|++|+++.. .+..|.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~------------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~ 58 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK------------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFH 58 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS------------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC------------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhc
Confidence 5799999999853 234456666653 333 2444333 4677777777777753 344677
Q ss_pred CCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc
Q 046398 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW 219 (794)
Q Consensus 140 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~ 219 (794)
.+++|++|++++|.++...+..|.++++|++|++++|.+. +..+..+.++++|++|++++|.+++..+..
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 128 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ----------ALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC----------CCCTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC----------cCCHhHcccccCCCEEECCCCccCeeCHHH
Confidence 7777777777777776544445566666666666665532 222234455666666666666666655555
Q ss_pred ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhh
Q 046398 220 LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSA 299 (794)
Q Consensus 220 l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~ 299 (794)
+..+++|++|++++|.+++ ++ +..+..++
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~-~~-------------------------~~~~~~l~------------------------- 157 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQS-LP-------------------------KGVFDKLT------------------------- 157 (270)
T ss_dssp TTTCTTCCEEECCSSCCCC-CC-------------------------TTTTTTCT-------------------------
T ss_pred hCcCcCCCEEECCCCcCCc-cC-------------------------HhHccCCc-------------------------
Confidence 5555556666555555542 22 22222333
Q ss_pred cCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc
Q 046398 300 CGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG 365 (794)
Q Consensus 300 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 365 (794)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 158 ----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 158 ----SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44444444444555555567777888888888888886666667788888888888888764
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=5e-22 Score=205.20 Aligned_cols=204 Identities=22% Similarity=0.253 Sum_probs=115.7
Q ss_pred CCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccC
Q 046398 143 NLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSK 222 (794)
Q Consensus 143 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 222 (794)
+|++|++++|++++..+..+.++++|++|++++|.+. +..+..+.++++|++|++++|.+++..+..+.+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC----------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC----------ccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4555555555555444445555555555555555422 222334555666666666666666666566666
Q ss_pred CCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCC-CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcC
Q 046398 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGG-PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACG 301 (794)
Q Consensus 223 l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~ 301 (794)
+++|++|++++|.+.+..+. .+.++++|++|+++ ++.+.+ .+|..+..+++|+.|++++|++++..+..+..+.
T Consensus 99 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~-~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--- 173 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENF-PIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--- 173 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH---
T ss_pred CccccEEECCCCCccccCch-hcccCCCCCEEECc-CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh---
Confidence 66666666666666543332 46666666666666 444443 3567777777777777777777665555444444
Q ss_pred cCCcc----EEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCccc
Q 046398 302 ASALE----SLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN 364 (794)
Q Consensus 302 ~~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (794)
+++ +|++++|.+++..+..+.. .+|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 174 --~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 174 --QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp --TCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred --hccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 343 5666666665544433332 35666666666655444444455555555555555554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.5e-22 Score=208.47 Aligned_cols=183 Identities=21% Similarity=0.272 Sum_probs=141.5
Q ss_pred cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccc
Q 046398 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK 523 (794)
Q Consensus 444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~ 523 (794)
+..+++|++|++++|++++ + ..+..+++|++|++++|+++ .++...+..+++|++|++++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~----------------~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD----------------I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC----------------C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred cccCCCCcEEECCCCCCCC----------------c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCc
Confidence 5667788888888887765 2 25667888888888888887 4444443468888888888888
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcc
Q 046398 524 FDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNS 603 (794)
Q Consensus 524 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 603 (794)
+++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----------------------------------------- 159 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL----------------------------------------- 159 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------------------------------
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-----------------------------------------
Confidence 887777778888888888888888886666555554444
Q ss_pred cccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEE
Q 046398 604 ILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHL 683 (794)
Q Consensus 604 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 683 (794)
+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|++.+.. +.|+.+
T Consensus 160 -----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l 227 (272)
T 3rfs_A 160 -----TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYL 227 (272)
T ss_dssp -----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHH
T ss_pred -----CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHH
Confidence 78888888888777777788888888888888888777777888888888888888887643 467888
Q ss_pred eCcCCcccccCCCC
Q 046398 684 NVSNNLLTGKIPSS 697 (794)
Q Consensus 684 ~ls~N~l~g~iP~~ 697 (794)
+++.|.++|.+|..
T Consensus 228 ~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 228 SEWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHHTGGGBBCT
T ss_pred HHHHHhCCCcccCc
Confidence 88888888888864
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.5e-22 Score=203.02 Aligned_cols=211 Identities=20% Similarity=0.244 Sum_probs=162.7
Q ss_pred CCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccC
Q 046398 449 NLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL 528 (794)
Q Consensus 449 ~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~ 528 (794)
+.++++++++.++. +|..+. ++++.|++++|++++..+..+. .+++|++|+|++|++++..
T Consensus 15 ~~~~l~~~~~~l~~----------------~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 15 GKKEVDCQGKSLDS----------------VPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp GGTEEECTTCCCSS----------------CCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCC
T ss_pred CCeEEecCCCCccc----------------cCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccC
Confidence 46778888888775 444443 5889999999999855554444 7899999999999999888
Q ss_pred CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398 529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV 608 (794)
Q Consensus 529 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L 608 (794)
+..|..+++|++|++++|++++..+..+..+++|
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---------------------------------------------- 109 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL---------------------------------------------- 109 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------------------------------------------
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCC----------------------------------------------
Confidence 8889999999999999999987766666555444
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
++|++++|++++..+..+..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..+..+..+++|++|++++|
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 88999999999777777899999999999999999777778999999999999999999988889999999999999999
Q ss_pred cccccCCCCCccCc------cCcccccCCCcCCCCCC-CCCCC
Q 046398 689 LLTGKIPSSTQLQS------FDASCFVGNNLCGPPLP-SCTEN 724 (794)
Q Consensus 689 ~l~g~iP~~~~~~~------~~~~~~~gn~lcg~~~~-~c~~~ 724 (794)
++++..+....+.. .......|+.+++.|.. .|...
T Consensus 190 ~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 190 QFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred ceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 99988554322211 11222445667776655 66543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.1e-21 Score=201.29 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=129.1
Q ss_pred CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccccc
Q 046398 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF 527 (794)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 527 (794)
++++.|++++|++++ ..+..+..+++|++|++++|++++ ++.. ..+++|+.|++++|+++ .
T Consensus 31 ~~l~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~~L~Ls~N~l~-~ 91 (290)
T 1p9a_G 31 KDTTILHLSENLLYT---------------FSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGTLDLSHNQLQ-S 91 (290)
T ss_dssp TTCCEEECTTSCCSE---------------EEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCCEEECCSSCCS-S
T ss_pred CCCCEEEcCCCcCCc---------------cCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCCEEECCCCcCC-c
Confidence 467777777776654 234556677777777777777763 4332 25777777777777776 4
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccc
Q 046398 528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNL 607 (794)
Q Consensus 528 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 607 (794)
+|..+..+++|++|++++|++++..|..|.++++|
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------------------- 126 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------------------- 126 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------------------
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------------------
Confidence 56667777788888888887776665656554444
Q ss_pred eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN 687 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 687 (794)
+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.+++++
T Consensus 127 -~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 127 -QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp -CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred -CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCC
Confidence 77788888887666666777888888888888888555555677888888888888887 5677777777888888888
Q ss_pred Cccccc
Q 046398 688 NLLTGK 693 (794)
Q Consensus 688 N~l~g~ 693 (794)
|++...
T Consensus 205 Np~~C~ 210 (290)
T 1p9a_G 205 NPWLCN 210 (290)
T ss_dssp CCBCCS
T ss_pred CCccCc
Confidence 887654
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.9e-23 Score=223.29 Aligned_cols=173 Identities=21% Similarity=0.216 Sum_probs=91.0
Q ss_pred CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC-CCCCCEEEccCCcccccCChhhhh---cCC-CCcEEEcccc
Q 046398 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN-FSNLEVLNLGDNEFVGKIPTWMGE---GFT-SLLILILRSN 522 (794)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~ip~~~~~---~l~-~L~~L~L~~n 522 (794)
++|++|++++|++++..+..+ ...+.. .++|++|++++|++++..+..+.. ..+ +|++|+|++|
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l-----------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEF-----------KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHH-----------HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred CCccEEECcCCcCCcHHHHHH-----------HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 456666666666655333221 122334 357888888888887543333221 233 7777777777
Q ss_pred cccccCCcccc----CC-CCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEecc
Q 046398 523 KFDGFLPIQLC----RL-TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGS 597 (794)
Q Consensus 523 ~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 597 (794)
++++..+..+. .+ ++|++|||++|++++.....+..
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~--------------------------------------- 218 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY--------------------------------------- 218 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------------------------------
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH---------------------------------------
Confidence 77765554333 33 47777777777766421111100
Q ss_pred chhhcccccceeEEEcCCCccccccChh----hhcccCCCEEeccccccccc-------CCccccccCCCCEEeCCCCcC
Q 046398 598 MVEYNSILNLVRIIDVSKNNFSGEIPME----LTYLRGLQSLNLSHNIFTGQ-------IPENIGNLISIESLDFSTNQL 666 (794)
Q Consensus 598 ~~~~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~~~-------ip~~l~~l~~L~~L~Ls~N~l 666 (794)
......+.|+.||+++|++++..+.. +..+++|++|+|++|.+.+. +++.+.++++|+.||+++|++
T Consensus 219 --~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 219 --IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp --HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred --HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 00000124466677777666543322 34456666666666664322 223445555566666666666
Q ss_pred cccCcc
Q 046398 667 SSKISQ 672 (794)
Q Consensus 667 ~~~~p~ 672 (794)
....+.
T Consensus 297 ~~~~~~ 302 (362)
T 3goz_A 297 HPSHSI 302 (362)
T ss_dssp CGGGCH
T ss_pred CCcchH
Confidence 554443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.5e-21 Score=199.28 Aligned_cols=188 Identities=20% Similarity=0.276 Sum_probs=166.0
Q ss_pred cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccc
Q 046398 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK 523 (794)
Q Consensus 444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~ 523 (794)
...+++|+.|++++|.++. + ..+..+++|++|++++|++++ ++ .+. .+++|++|++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~----------------~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS----------------V-QGIQYLPNVRYLALGGNKLHD-IS-ALK-ELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC----------------C-TTGGGCTTCCEEECTTSCCCC-CG-GGT-TCTTCCEEECTTSC
T ss_pred cccccceeeeeeCCCCccc----------------c-cccccCCCCcEEECCCCCCCC-ch-hhc-CCCCCCEEECCCCc
Confidence 4557889999999998875 2 347789999999999999984 44 444 79999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcc
Q 046398 524 FDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNS 603 (794)
Q Consensus 524 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 603 (794)
+++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----------------------------------------- 135 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL----------------------------------------- 135 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----------------------------------------
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-----------------------------------------
Confidence 998888889999999999999999997777666665554
Q ss_pred cccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEE
Q 046398 604 ILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHL 683 (794)
Q Consensus 604 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 683 (794)
+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|++++..|..+..+++|++|
T Consensus 136 -----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 136 -----TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp -----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -----CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 899999999998777778999999999999999998777888999999999999999999988889999999999
Q ss_pred eCcCCcccccCCCC
Q 046398 684 NVSNNLLTGKIPSS 697 (794)
Q Consensus 684 ~ls~N~l~g~iP~~ 697 (794)
++++|++.|.+|..
T Consensus 211 ~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 211 WLHDNPWDCTCPGI 224 (272)
T ss_dssp ECCSSCBCCCTTTT
T ss_pred EccCCCccccCcHH
Confidence 99999999998853
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3e-21 Score=200.15 Aligned_cols=179 Identities=20% Similarity=0.176 Sum_probs=148.1
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 504 (794)
.++.|++++|.+++..+..+..+++|++|++++|.+++ ++. ...+++|++|++++|+++ .+|
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------~~~-~~~l~~L~~L~Ls~N~l~-~l~ 93 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----------------LQV-DGTLPVLGTLDLSHNQLQ-SLP 93 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE----------------EEC-CSCCTTCCEEECCSSCCS-SCC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc----------------ccC-CCCCCcCCEEECCCCcCC-cCc
Confidence 55566666666665666778888899999999998875 222 267889999999999998 788
Q ss_pred hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC 584 (794)
Q Consensus 505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 584 (794)
..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 94 ~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------- 150 (290)
T 1p9a_G 94 LLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL---------------------- 150 (290)
T ss_dssp CCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------------------
T ss_pred hhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------------------
Confidence 7665 78999999999999998888889999999999999999987666666554444
Q ss_pred ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398 585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664 (794)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 664 (794)
+.|++++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus 151 ------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 151 ------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred ------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 88999999999666666788999999999999999 88999999999999999999
Q ss_pred cCccc
Q 046398 665 QLSSK 669 (794)
Q Consensus 665 ~l~~~ 669 (794)
++...
T Consensus 206 p~~C~ 210 (290)
T 1p9a_G 206 PWLCN 210 (290)
T ss_dssp CBCCS
T ss_pred CccCc
Confidence 98753
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.1e-23 Score=225.44 Aligned_cols=252 Identities=14% Similarity=0.207 Sum_probs=184.9
Q ss_pred cCCccccCCCCCCeEeccCcccccccChh---hhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCc
Q 046398 366 SIPLSLGKISHLEYLDLSNNKMNGTLSEI---HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPS 442 (794)
Q Consensus 366 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 442 (794)
.++..+..+++|++|++++|.+.+..+.. .+..+++|+.|++++|.+. .+.+.+|.
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~---------------------~l~~~~~~ 81 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG---------------------RVKDEIPE 81 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT---------------------SCGGGSHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC---------------------ccccchhH
Confidence 45667777888888888888887543221 2456677777777765331 22223333
Q ss_pred c-------cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhh---cC-
Q 046398 443 W-------LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE---GF- 511 (794)
Q Consensus 443 ~-------l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~---~l- 511 (794)
. +..+++|++|++++|.+++.-.. .+|..+..+++|++|+|++|.+++..+..+.. .+
T Consensus 82 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-----------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~ 150 (386)
T 2ca6_A 82 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQE-----------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150 (386)
T ss_dssp HHHHHHHHHTTCTTCCEEECCSCCCCTTTHH-----------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcccEEECCCCcCCHHHHH-----------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh
Confidence 3 36788899999999988763111 24455667889999999999887544443332 22
Q ss_pred --------CCCcEEEccccccc-ccCC---ccccCCCCCCEEEccCCcCccc-----CCchhhccccccccccccCCCCc
Q 046398 512 --------TSLLILILRSNKFD-GFLP---IQLCRLTSLQILDVANNSLSGT-----MPGCVNNFSAMATIDSSHQSNAM 574 (794)
Q Consensus 512 --------~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~l~~~~~~~~~ 574 (794)
++|++|++++|+++ +.++ ..+..+++|++|++++|+++.. .|..+.
T Consensus 151 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~----------------- 213 (386)
T 2ca6_A 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA----------------- 213 (386)
T ss_dssp HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-----------------
T ss_pred hhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-----------------
Confidence 89999999999987 3344 4667888999999999988621 121222
Q ss_pred ccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccc----cccChhhhcccCCCEEeccccccccc----C
Q 046398 575 SYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS----GEIPMELTYLRGLQSLNLSHNIFTGQ----I 646 (794)
Q Consensus 575 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----i 646 (794)
.++.|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. +
T Consensus 214 -----------------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 214 -----------------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp -----------------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred -----------------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 2455689999999996 67888999999999999999999876 5
Q ss_pred Ccccc--ccCCCCEEeCCCCcCcc----cCcccc-cCCCCCCEEeCcCCcccccCC
Q 046398 647 PENIG--NLISIESLDFSTNQLSS----KISQSM-SSLSFLNHLNVSNNLLTGKIP 695 (794)
Q Consensus 647 p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~iP 695 (794)
|..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 67774 48999999999999998 588877 668999999999999998875
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.9e-22 Score=212.53 Aligned_cols=251 Identities=19% Similarity=0.238 Sum_probs=164.4
Q ss_pred CCCEEEccCCcccccCCccccCC--CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceE
Q 046398 352 SLTRLDLSRNMLNGSIPLSLGKI--SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTL 429 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 429 (794)
.++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..++ +|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~------------------------~L~~L 98 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPF------------------------RVQHM 98 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCB------------------------CCCEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCC------------------------CCCEE
Confidence 3667777777665 2334444 5666777766666544332 22334 44444
Q ss_pred ecccccCCCC-CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCC-ccccc-CChh
Q 046398 430 LLMSCHLGPQ-FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN-EFVGK-IPTW 506 (794)
Q Consensus 430 ~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-ip~~ 506 (794)
++++|.+.+. ++..+..+++|++|++++|++++. .+..+..+++|++|++++| .+++. ++..
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~---------------~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP---------------IVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH---------------HHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH---------------HHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 5555544433 555667778888888888876653 3445667788888888888 56653 4444
Q ss_pred hhhcCCCCcEEEcccc-ccccc-CCccccCCC-CCCEEEccCCc--Cc-ccCCchhhccccccccccccCCCCccccccc
Q 046398 507 MGEGFTSLLILILRSN-KFDGF-LPIQLCRLT-SLQILDVANNS--LS-GTMPGCVNNFSAMATIDSSHQSNAMSYFEVT 580 (794)
Q Consensus 507 ~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~ 580 (794)
+. .+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|..+.+
T Consensus 164 ~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~---------------------- 220 (336)
T 2ast_B 164 LS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR---------------------- 220 (336)
T ss_dssp HH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH----------------------
T ss_pred Hh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh----------------------
Confidence 43 6888888888888 77754 466677788 88888888883 43 233333333
Q ss_pred ccccccceeeEEEEeccchhhcccccceeEEEcCCCc-cccccChhhhcccCCCEEeccccc-ccccCCccccccCCCCE
Q 046398 581 AYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN-FSGEIPMELTYLRGLQSLNLSHNI-FTGQIPENIGNLISIES 658 (794)
Q Consensus 581 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~ 658 (794)
+++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.
T Consensus 221 ------------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 221 ------------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp ------------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ------------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 3445788888888 777777788888888888888885 33222235778888888
Q ss_pred EeCCCCcCcccCcccccCC-CCCCEEeCcCCcccccCCCC
Q 046398 659 LDFSTNQLSSKISQSMSSL-SFLNHLNVSNNLLTGKIPSS 697 (794)
Q Consensus 659 L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~ 697 (794)
|++++| ++. ..+..+ ..+..|++++|++++..|..
T Consensus 277 L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 277 LQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp EECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred EeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 888888 433 233333 23677778888888887753
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=4.2e-23 Score=220.06 Aligned_cols=266 Identities=20% Similarity=0.207 Sum_probs=170.3
Q ss_pred CCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCC--CCCCEEeCCCCCCCCCCCCc
Q 046398 59 DGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDL--KHLTHLDLSGNDFQGIRIPK 136 (794)
Q Consensus 59 ~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~ 136 (794)
+.-|.+|.++.|+ ...++.+++++. .+. +..+.++ +++++|++++|.+.+. +.
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~------------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~--~~ 87 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGK------------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP--LA 87 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTC------------------BCC---HHHHHHHHHTTCSEEECTTCEECSC--CC
T ss_pred HHHHHHHHHHhcC--chhheeeccccc------------------cCC---HHHHHhhhhccceEEEcCCcccccc--ch
Confidence 3456679998875 335777888774 333 3345555 7889999999888863 33
Q ss_pred ccCCCCCCCEEEcCCCCCCCC-CcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCC-CCCC
Q 046398 137 YLGSLKNLRYLNLSGAEFAGI-IPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN-KFNS 214 (794)
Q Consensus 137 ~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n-~l~~ 214 (794)
.+..+++|++|++++|.+++. +|..+..+++|++|++++|.+ .+..|..++++++|++|++++| .+++
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l----------~~~~~~~l~~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL----------SDPIVNTLAKNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC----------CHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc----------CHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence 456788899999988887755 677777777777777776652 3344556666777777777777 4554
Q ss_pred C-CCccccCCCCCCeEeeecc-CCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccC-CCCEEEccCC--CCC-c
Q 046398 215 T-TAGWLSKFNHLEFLSLSSN-GLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC-ELTSIDVSDV--KLS-Q 288 (794)
Q Consensus 215 ~-~~~~l~~l~~L~~L~L~~n-~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~-~L~~L~l~~~--~l~-~ 288 (794)
. .+..+..+++|++|++++| .+++. .++..+..++ +|+.|++++| .++ +
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTEK-------------------------HVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHH-------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcChH-------------------------HHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 2 3444555666666666665 44421 1344455566 6666666666 344 3
Q ss_pred chHHHHHhhhhcCcCCccEEEeeccc-ccccccccccCCCCCCEEEccCCc-CcCCCCCCcCCCCCCCEEEccCCccccc
Q 046398 289 DLSQVLDILSACGASALESLVFSSSQ-ISGHLTSQLGQFKSLRTLSLDDNC-ISGPLPPALGDLSSLTRLDLSRNMLNGS 366 (794)
Q Consensus 289 ~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 366 (794)
.++..+..++ +|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|++|++++| ++..
T Consensus 213 ~l~~~~~~~~-----~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 213 DLSTLVRRCP-----NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp HHHHHHHHCT-----TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred HHHHHHhhCC-----CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence 3444444444 77777777777 666666677778888888888874 22221224667888888888887 4322
Q ss_pred CCccccCC-CCCCeEeccCcccccccCh
Q 046398 367 IPLSLGKI-SHLEYLDLSNNKMNGTLSE 393 (794)
Q Consensus 367 ~p~~l~~l-~~L~~L~Ls~N~l~~~~~~ 393 (794)
.+..+ .+++.|++++|++++..|.
T Consensus 287 ---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 287 ---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp ---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred ---HHHHHHhhCcceEEecccCccccCC
Confidence 22223 3466777888888876665
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=205.06 Aligned_cols=207 Identities=21% Similarity=0.203 Sum_probs=135.2
Q ss_pred cceEecccccCCCCCCccc--CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccC
Q 046398 426 LKTLLLMSCHLGPQFPSWL--HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI 503 (794)
Q Consensus 426 L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i 503 (794)
|++|++++|.+.+..|..+ ..+++|++|++++|++++..+.. ....+..+++|++|++++|++++..
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-----------~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-----------AELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-----------HHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh-----------HHHHhhhccCCCEEEeeCCCcchhh
Confidence 4444444444444555554 56667777777777766532210 0022335677777777777776444
Q ss_pred ChhhhhcCCCCcEEEccccccccc--C--CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccc
Q 046398 504 PTWMGEGFTSLLILILRSNKFDGF--L--PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEV 579 (794)
Q Consensus 504 p~~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 579 (794)
|..+. .+++|++|+|++|++.+. + +..+..+++|++|++++|+++. ++....
T Consensus 162 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~---------------------- 217 (310)
T 4glp_A 162 CEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA---------------------- 217 (310)
T ss_dssp TTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH----------------------
T ss_pred HHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH----------------------
Confidence 44433 577777777777776542 1 2233567788888888887752 111100
Q ss_pred cccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcc---cCCCEEecccccccccCCccccccCCC
Q 046398 580 TAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYL---RGLQSLNLSHNIFTGQIPENIGNLISI 656 (794)
Q Consensus 580 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L 656 (794)
.....++.|+.||+++|++++.+|..+..+ ++|++|+|++|+++ .+|..+. ++|
T Consensus 218 --------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L 274 (310)
T 4glp_A 218 --------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL 274 (310)
T ss_dssp --------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred --------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence 001123445888888898888778777776 68999999999998 7787775 789
Q ss_pred CEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccc
Q 046398 657 ESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG 692 (794)
Q Consensus 657 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 692 (794)
+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 275 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999999999874 33 6778889999999998874
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=5.4e-23 Score=223.50 Aligned_cols=252 Identities=16% Similarity=0.206 Sum_probs=185.8
Q ss_pred CCCCCcCCCCCCCEEEccCCcccccCC----ccccCCCCCCeEeccCcc---cccccChhh------hcCCCCCCEEECc
Q 046398 342 PLPPALGDLSSLTRLDLSRNMLNGSIP----LSLGKISHLEYLDLSNNK---MNGTLSEIH------FVNLTKLTWFSAS 408 (794)
Q Consensus 342 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N~---l~~~~~~~~------~~~l~~L~~L~ls 408 (794)
.++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|. +.+.+|... +..+++|+.|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455667788999999999999986533 447789999999999964 444444321 3566666666666
Q ss_pred CCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC--
Q 046398 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF-- 486 (794)
Q Consensus 409 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l-- 486 (794)
+|.+..... ..++..+..+++|++|++++|.+++..+..+ +..+..+
T Consensus 103 ~n~l~~~~~--------------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l-----------~~~l~~l~~ 151 (386)
T 2ca6_A 103 DNAFGPTAQ--------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-----------ARALQELAV 151 (386)
T ss_dssp SCCCCTTTH--------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-----------HHHHHHHHH
T ss_pred CCcCCHHHH--------------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHH-----------HHHHHHHhh
Confidence 665432000 0355667788899999999998875433332 2223333
Q ss_pred -------CCCCEEEccCCccc-ccCCh---hhhhcCCCCcEEEcccccccc-----cCCccccCCCCCCEEEccCCcCc-
Q 046398 487 -------SNLEVLNLGDNEFV-GKIPT---WMGEGFTSLLILILRSNKFDG-----FLPIQLCRLTSLQILDVANNSLS- 549 (794)
Q Consensus 487 -------~~L~~L~Ls~n~l~-~~ip~---~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~- 549 (794)
++|++|++++|+++ +.+|. .+ ..+++|+.|++++|+++. ..|..+..+++|++|+|++|.++
T Consensus 152 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH-HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred hhhcccCCCCcEEECCCCCCCcHHHHHHHHHH-HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 89999999999997 34442 33 368899999999999873 34447889999999999999986
Q ss_pred ---ccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc----c
Q 046398 550 ---GTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE----I 622 (794)
Q Consensus 550 ---~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----i 622 (794)
+.+|..+..+ +.|+.|+|++|++++. +
T Consensus 231 ~g~~~l~~~l~~~----------------------------------------------~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 231 LGSSALAIALKSW----------------------------------------------PNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HHHHHHHHHGGGC----------------------------------------------TTCCEEECTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHccC----------------------------------------------CCcCEEECCCCCCchhhHHHH
Confidence 4455444443 3458999999999876 5
Q ss_pred Chhhhc--ccCCCEEecccccccc----cCCccc-cccCCCCEEeCCCCcCcccCc
Q 046398 623 PMELTY--LRGLQSLNLSHNIFTG----QIPENI-GNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 623 p~~l~~--l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~~p 671 (794)
|..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 666744 8999999999999997 488888 678999999999999998774
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3e-20 Score=188.79 Aligned_cols=193 Identities=22% Similarity=0.314 Sum_probs=161.8
Q ss_pred CCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccC
Q 046398 60 GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139 (794)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~ 139 (794)
.+||.|.|.+|.. ..+.+++++. .+. .+|..+. +++++|+|++|.+++. .+..+.
T Consensus 2 ~~Cp~~~gC~C~~---~~~~l~~~~~------------------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~ 56 (251)
T 3m19_A 2 KTCETVTGCTCNE---GKKEVDCQGK------------------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFR 56 (251)
T ss_dssp --CHHHHSSEEEG---GGTEEECTTC------------------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTT
T ss_pred ccCCCCCceEcCC---CCeEEecCCC------------------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhc
Confidence 3688999999953 2335677763 333 3555454 5899999999999975 677899
Q ss_pred CCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc
Q 046398 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW 219 (794)
Q Consensus 140 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~ 219 (794)
.+++|++|+|++|.+++..|..+.++++|++|++++|.+. +..+..+..+++|++|++++|++++..+..
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA----------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc----------ccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence 9999999999999999888888999999999999988854 344567889999999999999999988888
Q ss_pred ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcc
Q 046398 220 LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289 (794)
Q Consensus 220 l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 289 (794)
+..+++|++|++++|.+++..+ ..+..+++|++|+++ +|.+.+..+..+..+++|+.|++++|.+...
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECC-CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999999999999985444 378999999999999 7788888788899999999999999999876
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=198.61 Aligned_cols=233 Identities=17% Similarity=0.143 Sum_probs=161.9
Q ss_pred cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccc--cCCCCCCEEEccCCcCcCCCC----CC
Q 046398 273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQL--GQFKSLRTLSLDDNCISGPLP----PA 346 (794)
Q Consensus 273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~ 346 (794)
...++.+.+..+.++......+... ...++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRV--LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHH--HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHh--cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 3457788888877764332222111 112368888888888888888777 788888888888888886554 23
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccc--c-ChhhhcCCCCCCEEECcCCcceeEcCCCCcCc
Q 046398 347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGT--L-SEIHFVNLTKLTWFSASGNSLILQVNPNWVPP 423 (794)
Q Consensus 347 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 423 (794)
+..+++|++|++++|.+++..+..++.+++|++|++++|++.+. + +...+..+++|+.|++++|.++..
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------- 212 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-------- 212 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--------
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch--------
Confidence 34678888888888888877777788888888888888887542 1 111234555555555555544210
Q ss_pred cccceEecccccCCCCCCc-ccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC---CCCCEEEccCCcc
Q 046398 424 FQLKTLLLMSCHLGPQFPS-WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF---SNLEVLNLGDNEF 499 (794)
Q Consensus 424 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l---~~L~~L~Ls~n~l 499 (794)
...+. .+..+++|++|++++|++++. .|..+..+ ++|++|++++|++
T Consensus 213 --------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------------~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 213 --------------TGVCAALAAAGVQPHSLDLSHNSLRAT---------------VNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp --------------HHHHHHHHHHTCCCSSEECTTSCCCCC---------------CCSCCSSCCCCTTCCCEECCSSCC
T ss_pred --------------HHHHHHHHhcCCCCCEEECCCCCCCcc---------------chhhHHhccCcCcCCEEECCCCCC
Confidence 01111 245678888999999988764 34445444 6899999999999
Q ss_pred cccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcc
Q 046398 500 VGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG 550 (794)
Q Consensus 500 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 550 (794)
+ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 264 ~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 264 E-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred C-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8 7887653 7899999999999864 33 6778999999999998864
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1e-20 Score=190.81 Aligned_cols=199 Identities=17% Similarity=0.219 Sum_probs=142.4
Q ss_pred CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCc-ccccCChhhhhcCCCCcEEEccc-cccc
Q 046398 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNE-FVGKIPTWMGEGFTSLLILILRS-NKFD 525 (794)
Q Consensus 448 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~-n~l~ 525 (794)
+++++|++++|++++ ..+..+.++++|++|++++|+ ++ .++...+..+++|++|++++ |+++
T Consensus 31 ~~l~~L~l~~n~l~~---------------i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT---------------IPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp TTCCEEEEESCCCSE---------------ECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCC
T ss_pred CcccEEEEeCCcceE---------------ECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCee
Confidence 378888888887765 233467778888888888886 66 56654444688888888887 8888
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccc
Q 046398 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL 605 (794)
Q Consensus 526 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 605 (794)
+..+..|..+++|++|++++|++++ +|. +..+++++
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~------------------------------------------ 130 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD------------------------------------------ 130 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC------------------------------------------
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc------------------------------------------
Confidence 7767778888888888888888875 554 44444431
Q ss_pred cceeEEEcCCC-ccccccChhhhcccCCC-EEecccccccccCCccccccCCCCEEeCCCCc-CcccCcccccCC-CCCC
Q 046398 606 NLVRIIDVSKN-NFSGEIPMELTYLRGLQ-SLNLSHNIFTGQIPENIGNLISIESLDFSTNQ-LSSKISQSMSSL-SFLN 681 (794)
Q Consensus 606 ~~L~~LdLs~N-~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~ 681 (794)
.|+.|++++| ++++..+..+..+++|+ +|++++|+++ .+|......++|+.|++++|+ +++..+..+..+ ++|+
T Consensus 131 -~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 131 -IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp -SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred -cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 1357888888 88766666688888888 8888888888 555544344788888888884 887767778888 8888
Q ss_pred EEeCcCCcccccCCCCCccCccCcccccC
Q 046398 682 HLNVSNNLLTGKIPSSTQLQSFDASCFVG 710 (794)
Q Consensus 682 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 710 (794)
.|++++|++++ +|.. .+..+....+.+
T Consensus 209 ~L~l~~N~l~~-l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 209 LLDVSQTSVTA-LPSK-GLEHLKELIARN 235 (239)
T ss_dssp EEECTTCCCCC-CCCT-TCTTCSEEECTT
T ss_pred EEECCCCcccc-CChh-HhccCceeeccC
Confidence 88888888874 4443 444444443333
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.2e-20 Score=190.28 Aligned_cols=197 Identities=18% Similarity=0.209 Sum_probs=145.3
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCC-CCCCcchhHHhccccceeccCcccCCCCCCCEEEccC-Cccccc
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNAR-ISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGD-NEFVGK 502 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~ 502 (794)
++++|++++|.+++..+..+..+++|++|++++|+ +++ ..+..|.++++|++|++++ |+++ .
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---------------i~~~~f~~l~~L~~L~l~~~n~l~-~ 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ---------------LESHSFYNLSKVTHIEIRNTRNLT-Y 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE---------------ECTTTEESCTTCCEEEEEEETTCC-E
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce---------------eCHhHcCCCcCCcEEECCCCCCee-E
Confidence 55666666666665556667778888888888886 654 2334677888888888887 8887 5
Q ss_pred CChhhhhcCCCCcEEEcccccccccCCccccCCCCCC---EEEccCC-cCcccCCchhhccccccccccccCCCCccccc
Q 046398 503 IPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQ---ILDVANN-SLSGTMPGCVNNFSAMATIDSSHQSNAMSYFE 578 (794)
Q Consensus 503 ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~ 578 (794)
+|...+..+++|+.|++++|++++ +|. +..+++|+ +|++++| ++++..+..|.++++|
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L---------------- 157 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE---------------- 157 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS----------------
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc----------------
Confidence 554444468888888888888886 555 77888888 8999988 8876666666555544
Q ss_pred ccccccccceeeEEEEeccchhhccccccee-EEEcCCCccccccChhhhcccCCCEEeccccc-ccccCCcccccc-CC
Q 046398 579 VTAYDCEVLEDASIVMKGSMVEYNSILNLVR-IIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI-FTGQIPENIGNL-IS 655 (794)
Q Consensus 579 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~ 655 (794)
+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|..+ ++
T Consensus 158 ------------------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 158 ------------------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp ------------------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred ------------------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 7 8888888888 555544444789999999995 886666778888 89
Q ss_pred CCEEeCCCCcCcccCcccccCCCCCCEEeCcCCc
Q 046398 656 IESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNL 689 (794)
Q Consensus 656 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 689 (794)
|+.|++++|++++. |.. .+++|+.|+++++.
T Consensus 207 L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 207 PSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 99999999999864 433 67788889888763
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.8e-20 Score=194.92 Aligned_cols=191 Identities=21% Similarity=0.338 Sum_probs=147.3
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 504 (794)
+|++|++++|.+.. ++ .+..+++|++|++++|++++ ++. +..+++|++|++++|+++ .++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~----------------~~~-~~~l~~L~~L~L~~n~l~-~~~ 101 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD----------------LAP-LKNLTKITELELSGNPLK-NVS 101 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC----------------CGG-GTTCCSCCEEECCSCCCS-CCG
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC----------------Chh-HccCCCCCEEEccCCcCC-Cch
Confidence 44444444444433 23 36678888888998888875 333 778889999999999887 454
Q ss_pred hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC 584 (794)
Q Consensus 505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 584 (794)
.+. .+++|+.|++++|++++. + .+..+++|++|++++|++++..+ +..
T Consensus 102 -~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------------------- 149 (308)
T 1h6u_A 102 -AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG-------------------------- 149 (308)
T ss_dssp -GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------------
T ss_pred -hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------------------
Confidence 343 688999999999998864 3 38889999999999998875433 333
Q ss_pred ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398 585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664 (794)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 664 (794)
++.|+.|++++|++++..+ +..+++|+.|++++|++++. +. +..+++|+.|+|++|
T Consensus 150 --------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 150 --------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp --------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTS
T ss_pred --------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCC
Confidence 3345889999999986433 88999999999999999854 33 899999999999999
Q ss_pred cCcccCcccccCCCCCCEEeCcCCccccc
Q 046398 665 QLSSKISQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 665 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
++++..| +..+++|+.|++++|++++.
T Consensus 206 ~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 206 QISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred ccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 9997654 88999999999999999863
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.3e-21 Score=210.40 Aligned_cols=256 Identities=18% Similarity=0.219 Sum_probs=117.3
Q ss_pred EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCc----ccccCCc-cccccccCccccccccccccccccCCCCcc
Q 046398 122 LDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIP----HQLGNLS-NLRCLDLSWSEYALQVHSFSWLSGQIPNRL 196 (794)
Q Consensus 122 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l 196 (794)
++++.|.+++. +|..+...++|++|+|++|.+++..+ +.+.+++ +|++|++++|.+. +..+..+
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----------~~~~~~l 71 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----------FKNSDEL 71 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG----------GSCHHHH
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC----------HHHHHHH
Confidence 34455555542 44444444445555555555544333 3444444 4555555444422 1122222
Q ss_pred CCC-----CCCCEEECcCCCCCCCCCcccc----CC-CCCCeEeeeccCCCCCCCcc---ccCC-CCCCcEEEccCCCCC
Q 046398 197 GNL-----TSLRHLDLSANKFNSTTAGWLS----KF-NHLEFLSLSSNGLQGTISSI---GLEN-LTSIKTIDLSLNFEL 262 (794)
Q Consensus 197 ~~l-----~~L~~L~Ls~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~i~~~---~l~~-l~~L~~L~L~~~~~~ 262 (794)
..+ ++|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+.. .+.. .++|++|+++ +|.+
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l 150 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR-GNDL 150 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT-TSCG
T ss_pred HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc-CCcC
Confidence 222 5555555555555554444322 22 45555555555554222110 1222 1345555555 3333
Q ss_pred CCCCc----hhhhccC-CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc----ccccccC-CCCCCEE
Q 046398 263 GGPIP----TSFVRLC-ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH----LTSQLGQ-FKSLRTL 332 (794)
Q Consensus 263 ~~~~~----~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L 332 (794)
++..+ ..+...+ +|+.|++++|.+++..+..+...-....++|++|++++|.+++. ++..+.. .++|++|
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 33222 2233333 66666666666665555444432111112566666666665542 2223333 3466666
Q ss_pred EccCCcCcCCCC----CCcCCCCCCCEEEccCCccccc-------CCccccCCCCCCeEeccCccccc
Q 046398 333 SLDDNCISGPLP----PALGDLSSLTRLDLSRNMLNGS-------IPLSLGKISHLEYLDLSNNKMNG 389 (794)
Q Consensus 333 ~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~ 389 (794)
++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++|++|++++|++.+
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 666666654332 2234455566666666653321 22234445555555565555543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.1e-19 Score=190.41 Aligned_cols=195 Identities=25% Similarity=0.370 Sum_probs=136.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCC
Q 046398 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQI 192 (794)
Q Consensus 113 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~l 192 (794)
..++++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+. .+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-----------~~ 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-----------NV 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-----------CC
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-----------Cc
Confidence 4578899999999998884 45 57889999999999999885443 888888999999888754 23
Q ss_pred CCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhc
Q 046398 193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR 272 (794)
Q Consensus 193 p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~ 272 (794)
+ .+.++++|++|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|++|+++ ++.+.+. +. +..
T Consensus 101 ~-~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~-~n~l~~~-~~-l~~ 171 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIG-NAQVSDL-TP-LAN 171 (308)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECC-SSCCCCC-GG-GTT
T ss_pred h-hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc---cccCCCCccEEEcc-CCcCCCC-hh-hcC
Confidence 3 57788888888888888877533 777888888888888776432 14555555555555 3333332 11 333
Q ss_pred cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398 273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS 352 (794)
Q Consensus 273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 352 (794)
++ +|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++
T Consensus 172 l~-----------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 218 (308)
T 1h6u_A 172 LS-----------------------------KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN 218 (308)
T ss_dssp CT-----------------------------TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred CC-----------------------------CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence 43 55566666666654433 6677788888888888875542 677888
Q ss_pred CCEEEccCCcccc
Q 046398 353 LTRLDLSRNMLNG 365 (794)
Q Consensus 353 L~~L~Ls~n~l~~ 365 (794)
|++|++++|.+++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 8888888888763
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=181.86 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=132.7
Q ss_pred CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398 490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS 568 (794)
Q Consensus 490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 568 (794)
+.+++++|.++ .+|..+. +.++.|+|++|++++..+ ..|..+++|++|++++|++++..+..|.++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 57888888887 6776543 456788888888887654 457888899999999998887777666665554
Q ss_pred cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398 569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE 648 (794)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 648 (794)
++|+|++|++++..+..+..+++|++|+|++|++++..|.
T Consensus 84 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 84 ----------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp ----------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred ----------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence 7889999999888888899999999999999999988899
Q ss_pred cccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398 649 NIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 649 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
.|..+++|+.|+|++|++++..|..+..+++|++|++++|++++..+-
T Consensus 124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999999999999999899999999999999999999987664
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.4e-19 Score=201.39 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=40.4
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCC-------CEEeCCCCcCcccCcccccCCCCCC
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISI-------ESLDFSTNQLSSKISQSMSSLSFLN 681 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~ 681 (794)
+.|++++|++++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+. +|..+..+++|+
T Consensus 163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 233 (571)
T 3cvr_A 163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTC 233 (571)
T ss_dssp CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTE
T ss_pred CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCC
Confidence 555555555553 444 33 55555555555555 4444 333 44 555555555552 455555555555
Q ss_pred EEeCcCCcccccCC
Q 046398 682 HLNVSNNLLTGKIP 695 (794)
Q Consensus 682 ~L~ls~N~l~g~iP 695 (794)
.|++++|+++|.+|
T Consensus 234 ~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 234 TIILEDNPLSSRIR 247 (571)
T ss_dssp EEECCSSSCCHHHH
T ss_pred EEEeeCCcCCCcCH
Confidence 55555555555554
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3e-19 Score=175.82 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=138.4
Q ss_pred CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc
Q 046398 451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI 530 (794)
Q Consensus 451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~ 530 (794)
+.++.+++.++. +|..+ .++|++|++++|+++ .++...+..+++|++|++++|++++..+.
T Consensus 10 ~~v~c~~~~l~~----------------~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 10 TTVECYSQGRTS----------------VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp TEEECCSSCCSS----------------CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CEEEecCCCccC----------------CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChh
Confidence 466677776664 34333 357889999999888 55555444788999999999998877667
Q ss_pred cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398 531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI 610 (794)
Q Consensus 531 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 610 (794)
.|..+++|++|++++|++++..+..+.++++| +.
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~ 104 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL----------------------------------------------KE 104 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------------------CE
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCC----------------------------------------------CE
Confidence 78889999999999999886655555554444 88
Q ss_pred EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398 611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690 (794)
Q Consensus 611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 690 (794)
|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+. ++.|++|+++.|++
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 177 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhC
Confidence 89999999877777788899999999999999976666788999999999999988754 45789999999999
Q ss_pred cccCCCC
Q 046398 691 TGKIPSS 697 (794)
Q Consensus 691 ~g~iP~~ 697 (794)
+|.+|..
T Consensus 178 ~g~ip~~ 184 (208)
T 2o6s_A 178 SGVVRNS 184 (208)
T ss_dssp TTTBBCT
T ss_pred Cceeecc
Confidence 9999963
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=6.8e-19 Score=197.76 Aligned_cols=188 Identities=28% Similarity=0.384 Sum_probs=110.4
Q ss_pred CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEec
Q 046398 376 HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455 (794)
Q Consensus 376 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 455 (794)
+++.|++++|.+++ +|... .++|+.|++++|.++ .+| ..+++|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-------------------------~ip---~~l~~L~~L~L 107 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-------------------------SLP---ELPASLEYLDA 107 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-------------------------CCC---CCCTTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-------------------------ccc---cccCCCCEEEc
Confidence 66677777776664 44311 245555555555544 233 23456666666
Q ss_pred cCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCC
Q 046398 456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRL 535 (794)
Q Consensus 456 s~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 535 (794)
++|++++ +|. +.. +|++|++++|++++ +|. .+++|+.|+|++|++++ +|. .+
T Consensus 108 s~N~l~~----------------ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l 159 (571)
T 3cvr_A 108 CDNRLST----------------LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LP 159 (571)
T ss_dssp CSSCCSC----------------CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred cCCCCCC----------------cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cC
Confidence 6666554 333 322 66666666666663 554 35666666666666664 343 45
Q ss_pred CCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCC
Q 046398 536 TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSK 615 (794)
Q Consensus 536 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 615 (794)
++|++|++++|++++ +|. +. + +|+.|+|++
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~----------------------------------------------~L~~L~Ls~ 189 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--E----------------------------------------------SLEALDVST 189 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--T----------------------------------------------TCCEEECCS
T ss_pred CCcCEEECCCCCCCC-cch-hh--C----------------------------------------------CCCEEECcC
Confidence 666666666666664 443 21 1 236666666
Q ss_pred CccccccChhhhcccCC-------CEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCC
Q 046398 616 NNFSGEIPMELTYLRGL-------QSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS 678 (794)
Q Consensus 616 N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 678 (794)
|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 6666 5555 443 55 77777777777 5777777777777777777777777777666543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.3e-18 Score=185.95 Aligned_cols=190 Identities=19% Similarity=0.129 Sum_probs=96.8
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCE-EECcCCcceeEcCCCCcCccccceEe
Q 046398 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW-FSASGNSLILQVNPNWVPPFQLKTLL 430 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~-L~ls~n~l~~~~~~~~~~~~~L~~L~ 430 (794)
++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++...|.+++++.. +.+..|++....+..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444442222334444444444444444443444434444444332 22333444444344444444444445
Q ss_pred cccccCCCCCCcccCCCCCCCEEeccCC-CCCCCcchhHHhccccceeccCcccCCC-CCCCEEEccCCcccccCChhhh
Q 046398 431 LMSCHLGPQFPSWLHSQKNLSVLDISNA-RISDTIPRWFWNSIFQLSGIIPESFKNF-SNLEVLNLGDNEFVGKIPTWMG 508 (794)
Q Consensus 431 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~~~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~ip~~~~ 508 (794)
+++|.+....+..+....++..+++.++ ++.. ..+..|..+ ..++.|++++|+++ .+|...+
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---------------l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f 174 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---------------IERNSFVGLSFESVILWLNKNGIQ-EIHNSAF 174 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE---------------ECTTSSTTSBSSCEEEECCSSCCC-EECTTSS
T ss_pred ccccccccCCchhhcccchhhhhhhcccccccc---------------ccccchhhcchhhhhhcccccccc-CCChhhc
Confidence 5555444444444444555666666543 3332 122234443 35677777777776 5666665
Q ss_pred hcCCCCcEEEccc-ccccccCCccccCCCCCCEEEccCCcCcccCCchhhc
Q 046398 509 EGFTSLLILILRS-NKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN 558 (794)
Q Consensus 509 ~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 558 (794)
...+|+.|++++ |.++...+..|..+++|++||+++|+++...+..+.+
T Consensus 175 -~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 175 -NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp -TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred -cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 356777777764 4454433446677777778888777777443333333
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=7.5e-19 Score=187.78 Aligned_cols=242 Identities=18% Similarity=0.171 Sum_probs=151.3
Q ss_pred CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC-CccCC
Q 046398 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP-NRLGN 198 (794)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp-~~l~~ 198 (794)
++++.++++++ ++|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|.+. +.+| ..|.+
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~----------~~i~~~~f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL----------EVIEADVFSN 77 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC----------CEECTTSBCS
T ss_pred CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC----------CccChhHhhc
Confidence 56788888888 578766 368899999999998655567889999999999888742 3344 45778
Q ss_pred CCCCCE-EECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCC
Q 046398 199 LTSLRH-LDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT 277 (794)
Q Consensus 199 l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~ 277 (794)
++++++ +.+++|+++...+..|..+++|++|++++|.++. ++...+....++..+++..++.+....+..+..+..
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~-- 154 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-- 154 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS--
T ss_pred chhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcch--
Confidence 888775 5667789999888889999999999999999884 443356666677778876444444333333333321
Q ss_pred EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccC-CcCcCCCCCCcCCCCCCCEE
Q 046398 278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDD-NCISGPLPPALGDLSSLTRL 356 (794)
Q Consensus 278 ~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 356 (794)
.++.|++++|+++...+..+ ..++|+++++.+ |.++...+..|.++++|++|
T Consensus 155 --------------------------~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 155 --------------------------ESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp --------------------------SCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred --------------------------hhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 34455555555554333322 334566666653 44443333445666666666
Q ss_pred EccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCC
Q 046398 357 DLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410 (794)
Q Consensus 357 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n 410 (794)
++++|+++. +|.. .+.+|+.|.+.++.--..+| .+.++++|+.+++.++
T Consensus 208 dLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 208 DISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLP--TLEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSCH
T ss_pred hcCCCCcCc-cChh--hhccchHhhhccCCCcCcCC--CchhCcChhhCcCCCC
Confidence 666666653 3321 23344444444333223444 2555666666666543
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.3e-18 Score=172.41 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=130.3
Q ss_pred CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccccc
Q 046398 490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH 569 (794)
Q Consensus 490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 569 (794)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 56788888887 6776543 678888888888887777788888899999999999888777777665555
Q ss_pred CCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcc
Q 046398 570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN 649 (794)
Q Consensus 570 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 649 (794)
++|+|++|++++..+..+..+++|++|+|++|++++..|..
T Consensus 83 ---------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 123 (220)
T 2v9t_B 83 ---------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123 (220)
T ss_dssp ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ---------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence 78889999998655556788999999999999999888889
Q ss_pred ccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccC
Q 046398 650 IGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKI 694 (794)
Q Consensus 650 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 694 (794)
|..+++|+.|+|++|++++..+..+..+++|++|++++|++.+..
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 999999999999999999988888999999999999999997643
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.3e-18 Score=171.96 Aligned_cols=157 Identities=21% Similarity=0.268 Sum_probs=136.2
Q ss_pred CCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398 489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS 568 (794)
Q Consensus 489 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 568 (794)
.+.++.++++++ .+|..+ .++|+.|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 567888888887 788754 3789999999999998888889999999999999999976555555554444
Q ss_pred cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398 569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE 648 (794)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 648 (794)
+.|+|++|++++..+..+..+++|++|+|++|+++ .+|.
T Consensus 91 ----------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 129 (229)
T 3e6j_A 91 ----------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR 129 (229)
T ss_dssp ----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred ----------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence 88999999999777777899999999999999999 8899
Q ss_pred cccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398 649 NIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 649 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
.+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 999999999999999999988888899999999999999999988763
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=169.38 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=135.7
Q ss_pred CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc
Q 046398 451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI 530 (794)
Q Consensus 451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~ 530 (794)
+.+++++|.++. +|..+. +.+++|++++|++++..|...+..+++|+.|+|++|++++..+.
T Consensus 14 ~~l~~s~n~l~~----------------iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 14 TTVDCSNQKLNK----------------IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp TEEECCSSCCSS----------------CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CEeEeCCCCccc----------------CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence 578888888875 444432 45789999999998655655555799999999999999988888
Q ss_pred cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398 531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI 610 (794)
Q Consensus 531 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 610 (794)
.|..+++|++|+|++|++++..+..|.++++| ++
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------------------------~~ 109 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESL----------------------------------------------KT 109 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC----------------------------------------------CE
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCC----------------------------------------------CE
Confidence 99999999999999999998777777665555 88
Q ss_pred EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc
Q 046398 611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++.+..+
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999889999999999999999999998889999999999999999999987654
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=4.5e-18 Score=167.35 Aligned_cols=180 Identities=23% Similarity=0.257 Sum_probs=103.3
Q ss_pred CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCC
Q 046398 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL 199 (794)
Q Consensus 120 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l 199 (794)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..++++++|++|++++|.+. +..+..+.++
T Consensus 10 ~~v~c~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l 75 (208)
T 2o6s_A 10 TTVECYSQGRT--SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ----------SLPNGVFNKL 75 (208)
T ss_dssp TEEECCSSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----------CCCTTTTTTC
T ss_pred CEEEecCCCcc--CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC----------ccChhhcCCC
Confidence 34555555555 344433 346666666666666555555566666666666655532 2222335566
Q ss_pred CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEE
Q 046398 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI 279 (794)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 279 (794)
++|++|++++|++++..+..+..+++|++|++++|.+++..+. .+.++++|++|+++ ++.+++..+..+..+++|+.|
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLY-QNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECC-CCccceeCHHHhccCCCccEE
Confidence 6666666666666666665566666666666666666633322 45666666666666 445555444456666666666
Q ss_pred EccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCC
Q 046398 280 DVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFK 327 (794)
Q Consensus 280 ~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 327 (794)
++++|.+.+.. +.|++|+++.|+++|.+|..++.++
T Consensus 154 ~l~~N~~~~~~------------~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 154 WLHDNPWDCTC------------PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ECCSCCBCCCT------------TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EecCCCeecCC------------CCHHHHHHHHHhCCceeeccCcccc
Confidence 66666554322 2455555566666666665555443
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=184.57 Aligned_cols=177 Identities=23% Similarity=0.287 Sum_probs=138.3
Q ss_pred CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhh-cCCCCcEEEcccccccccCC
Q 046398 451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE-GFTSLLILILRSNKFDGFLP 529 (794)
Q Consensus 451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~L~~n~l~~~~p 529 (794)
+.+++++++++. +|..+. +.++.|+|++|++++ ++...+. .+++|+.|+|++|++++..+
T Consensus 21 ~~l~c~~~~l~~----------------iP~~~~--~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 21 NILSCSKQQLPN----------------VPQSLP--SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp TEEECCSSCCSS----------------CCSSCC--TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred CEEEeCCCCcCc----------------cCccCC--CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccCh
Confidence 577888887775 444332 457889999998884 4444443 68889999999999988877
Q ss_pred ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccccccee
Q 046398 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVR 609 (794)
Q Consensus 530 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~ 609 (794)
..|..+++|++|+|++|++++..+..|.++++| +
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------------------------~ 115 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL----------------------------------------------E 115 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC----------------------------------------------C
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC----------------------------------------------C
Confidence 888889999999999999887666666555444 8
Q ss_pred EEEcCCCccccccChhhhcccCCCEEecccccccccCCcc-c---cccCCCCEEeCCCCcCcccCcccccCCCC--CCEE
Q 046398 610 IIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN-I---GNLISIESLDFSTNQLSSKISQSMSSLSF--LNHL 683 (794)
Q Consensus 610 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L 683 (794)
.|+|++|++++..|..|..+++|+.|+|++|+|++ +|.. + ..+++|+.|||++|++++..+..+..++. ++.|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence 88999999988888889999999999999999984 5544 4 67899999999999999877777888877 4889
Q ss_pred eCcCCccccc
Q 046398 684 NVSNNLLTGK 693 (794)
Q Consensus 684 ~ls~N~l~g~ 693 (794)
++++|++...
T Consensus 195 ~l~~N~~~C~ 204 (361)
T 2xot_A 195 YLHNNPLECD 204 (361)
T ss_dssp ECCSSCEECC
T ss_pred EecCCCccCC
Confidence 9999988753
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.2e-17 Score=173.26 Aligned_cols=173 Identities=21% Similarity=0.323 Sum_probs=138.1
Q ss_pred CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccc
Q 046398 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF 524 (794)
Q Consensus 445 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l 524 (794)
..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++++ ++. +. .+++|+.|++++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~----------------~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS----------------VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHTCCEEECTTSCCCC----------------CT-TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCC
T ss_pred hhcCcccEEEccCCCccc----------------Ch-hHhcCCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCcC
Confidence 346778888888888775 22 36678889999999998884 444 43 688999999999988
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccc
Q 046398 525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI 604 (794)
Q Consensus 525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (794)
++. ..+..+++|++|++++|++++. ..+..
T Consensus 103 ~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~---------------------------------------------- 132 (291)
T 1h6t_A 103 KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVH---------------------------------------------- 132 (291)
T ss_dssp CCG--GGGTTCTTCCEEECTTSCCCCC--GGGGG----------------------------------------------
T ss_pred CCC--hhhccCCCCCEEECCCCcCCCC--hhhcC----------------------------------------------
Confidence 763 3488899999999999988753 22332
Q ss_pred ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398 605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN 684 (794)
Q Consensus 605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 684 (794)
++.|+.|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|+
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE 206 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEE
Confidence 34458899999999865 578899999999999999996544 89999999999999999874 4 489999999999
Q ss_pred CcCCccccc
Q 046398 685 VSNNLLTGK 693 (794)
Q Consensus 685 ls~N~l~g~ 693 (794)
+++|+++..
T Consensus 207 l~~n~i~~~ 215 (291)
T 1h6t_A 207 LFSQECLNK 215 (291)
T ss_dssp EEEEEEECC
T ss_pred CcCCcccCC
Confidence 999999863
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.1e-17 Score=163.73 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=129.7
Q ss_pred CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc
Q 046398 451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI 530 (794)
Q Consensus 451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~ 530 (794)
+.++++++.++. +|..+. ++|+.|++++|+++ .++...+..+++|+.|+|++|++++..|.
T Consensus 14 ~~v~c~~~~l~~----------------iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 14 NIVDCRGKGLTE----------------IPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp TEEECTTSCCSS----------------CCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CEEEcCCCCcCc----------------CCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence 577888888775 454443 68999999999998 45554444789999999999999988899
Q ss_pred cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398 531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI 610 (794)
Q Consensus 531 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 610 (794)
.|..+++|++|+|++|+++...+..|.++++| +.
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L----------------------------------------------~~ 108 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSL----------------------------------------------QL 108 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------------------CE
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCC----------------------------------------------CE
Confidence 99999999999999999986655555555444 88
Q ss_pred EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCccc
Q 046398 611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK 669 (794)
Q Consensus 611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 669 (794)
|+|++|++++..|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 99999999988899999999999999999999987778899999999999999999763
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=2.1e-17 Score=164.96 Aligned_cols=164 Identities=21% Similarity=0.262 Sum_probs=127.4
Q ss_pred CCCCCCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCC
Q 046398 55 SWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRI 134 (794)
Q Consensus 55 ~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 134 (794)
.|+.+...|.|++|.|.... + +.+|..+. ++|++|+|++|.+++. .
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~------------------------------l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~ 56 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKR------------------------------H-ASVPAGIP--TNAQILYLHDNQITKL-E 56 (229)
T ss_dssp CCCCTTCEEETTEEECTTSC------------------------------C-SSCCSCCC--TTCSEEECCSSCCCCC-C
T ss_pred ccCCCCCEEeCCEeEccCCC------------------------------c-CccCCCCC--CCCCEEEcCCCccCcc-C
Confidence 34457788999999996421 1 22333332 7899999999999875 6
Q ss_pred CcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCC
Q 046398 135 PKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214 (794)
Q Consensus 135 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~ 214 (794)
|..+..+++|++|+|++|+++...+..|..+++|++|+|++|.+. +..+..+..+++|++|++++|+++
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~----------~l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT----------VLPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC----------ccChhHhCcchhhCeEeccCCccc-
Confidence 788889999999999999998666677889999999999988754 333455788999999999999998
Q ss_pred CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCC
Q 046398 215 TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGP 265 (794)
Q Consensus 215 ~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~ 265 (794)
.+|..+..+++|++|++++|.+++ ++...+..+++|++|+++ +|.+...
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~-~N~~~c~ 174 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLF-GNPWDCE 174 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECT-TSCBCTT
T ss_pred ccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEee-CCCccCC
Confidence 456678889999999999999984 444478889999999998 5555544
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.4e-17 Score=172.59 Aligned_cols=170 Identities=21% Similarity=0.328 Sum_probs=126.8
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 504 (794)
+|+.|++++|.+... + .+..+++|++|++++|++++ ++. +..+++|++|++++|+++ .+|
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~----------------~~~-l~~l~~L~~L~l~~n~l~-~~~ 106 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD----------------IKP-LANLKNLGWLFLDENKVK-DLS 106 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC----------------CGG-GTTCTTCCEEECCSSCCC-CGG
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC----------------Ccc-cccCCCCCEEECCCCcCC-CCh
Confidence 344444444444332 2 26667888888888888776 233 778888888999988887 354
Q ss_pred hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC 584 (794)
Q Consensus 505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 584 (794)
. +. .+++|+.|++++|++++. ..+..+++|++|++++|++++. ..+..
T Consensus 107 ~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~-------------------------- 154 (291)
T 1h6t_A 107 S-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR-------------------------- 154 (291)
T ss_dssp G-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG--------------------------
T ss_pred h-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc--------------------------
Confidence 4 33 688899999999988864 4678889999999999988753 23333
Q ss_pred ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398 585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664 (794)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 664 (794)
+++|+.|++++|++++..| +..+++|+.|+|++|++++ +| .+..+++|+.|++++|
T Consensus 155 --------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 155 --------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEE
T ss_pred --------------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCC
Confidence 3345889999999986555 8889999999999999985 45 4899999999999999
Q ss_pred cCcccC
Q 046398 665 QLSSKI 670 (794)
Q Consensus 665 ~l~~~~ 670 (794)
+++...
T Consensus 211 ~i~~~~ 216 (291)
T 1h6t_A 211 ECLNKP 216 (291)
T ss_dssp EEECCC
T ss_pred cccCCc
Confidence 988643
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2e-17 Score=161.04 Aligned_cols=154 Identities=15% Similarity=0.235 Sum_probs=119.4
Q ss_pred CCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccc
Q 046398 484 KNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMA 563 (794)
Q Consensus 484 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 563 (794)
..+++|+.|++++|+++ .+| .+. .+++|++|++++|.++. +..+..+++|++|++++|++++..|..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L- 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL- 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-
T ss_pred hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC-
Confidence 45677888888888887 666 343 68888888888886653 3467888888888888888887666665554444
Q ss_pred ccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccc-c
Q 046398 564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI-F 642 (794)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l 642 (794)
+.|++++|++++..|..++.+++|++|++++|+ +
T Consensus 115 ---------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 115 ---------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp ---------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred ---------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence 788899999888888888999999999999998 5
Q ss_pred cccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccc
Q 046398 643 TGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG 692 (794)
Q Consensus 643 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 692 (794)
+ .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus 150 ~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 T-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred c-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 5 566 688999999999999999873 3 68889999999999998764
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.7e-17 Score=188.57 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=39.1
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSE
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCC
Confidence 4555555555432 344555555555555555554333 45555555555555555542 23455555555555555
Q ss_pred cccc
Q 046398 689 LLTG 692 (794)
Q Consensus 689 ~l~g 692 (794)
++++
T Consensus 208 ~l~~ 211 (605)
T 1m9s_A 208 ECLN 211 (605)
T ss_dssp EEEC
T ss_pred cCcC
Confidence 5544
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.9e-17 Score=160.26 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=62.4
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
+.|++++|++++..|..+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++.+|..+..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55566666666566666667777777777777777666666777777777777777777777777777777777777777
Q ss_pred cccccCCC
Q 046398 689 LLTGKIPS 696 (794)
Q Consensus 689 ~l~g~iP~ 696 (794)
++++..|.
T Consensus 137 ~l~c~c~l 144 (192)
T 1w8a_A 137 PFNCNCHL 144 (192)
T ss_dssp CBCCSGGG
T ss_pred CccCcCcc
Confidence 77776653
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5e-17 Score=158.18 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=124.2
Q ss_pred CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccc
Q 046398 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF 524 (794)
Q Consensus 445 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l 524 (794)
..+++|+.|++++|.++. +| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~----------------l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD----------------LT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHHTCCEEEEESSCCSC----------------CT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTC
T ss_pred hhcCCccEEeccCCCccC----------------hH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCcc
Confidence 456778889999988874 44 5778889999999999775 333 444 689999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccc
Q 046398 525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI 604 (794)
Q Consensus 525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (794)
++..+..+..+++|++|++++|++++..|..+..+++|
T Consensus 101 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L------------------------------------------ 138 (197)
T 4ezg_A 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV------------------------------------------ 138 (197)
T ss_dssp BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC------------------------------------------
T ss_pred CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC------------------------------------------
Confidence 98788889999999999999999987777666655444
Q ss_pred ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcc
Q 046398 605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS 668 (794)
Q Consensus 605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 668 (794)
+.|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 139 ----~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 ----NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ----CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ----CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 889999998333566 68999999999999999985 55 78999999999999999864
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.8e-17 Score=167.66 Aligned_cols=170 Identities=22% Similarity=0.309 Sum_probs=138.0
Q ss_pred CCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccc
Q 046398 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDG 526 (794)
Q Consensus 447 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~ 526 (794)
+.++..+++++|.+++ ++ .+..+++|++|++++|+++ .+| .+. .+++|+.|++++|++++
T Consensus 18 l~~l~~l~l~~~~i~~----------------~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~ 77 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD----------------LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISD 77 (263)
T ss_dssp HHHHHHHHHTCSCTTS----------------EE-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC
T ss_pred HHHHHHHHhcCCCccc----------------cc-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCC
Confidence 4456677777777765 22 4567789999999999987 677 344 68999999999999987
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccccc
Q 046398 527 FLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN 606 (794)
Q Consensus 527 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 606 (794)
..+ +..+++|++|++++|++++. |.... +
T Consensus 78 ~~~--l~~l~~L~~L~L~~N~l~~l-~~~~~------------------------------------------------~ 106 (263)
T 1xeu_A 78 LSP--LKDLTKLEELSVNRNRLKNL-NGIPS------------------------------------------------A 106 (263)
T ss_dssp CGG--GTTCSSCCEEECCSSCCSCC-TTCCC------------------------------------------------S
T ss_pred Chh--hccCCCCCEEECCCCccCCc-Ccccc------------------------------------------------C
Confidence 654 88999999999999998752 21110 3
Q ss_pred ceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398 607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686 (794)
Q Consensus 607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 686 (794)
.|+.|++++|++++ ++ .+..+++|+.|+|++|++++. | .++.+++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 45899999999986 33 689999999999999999954 4 689999999999999999987 678999999999999
Q ss_pred CCccccc
Q 046398 687 NNLLTGK 693 (794)
Q Consensus 687 ~N~l~g~ 693 (794)
+|++++.
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 9999877
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=7.6e-17 Score=183.26 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=112.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL 431 (794)
Q Consensus 352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 431 (794)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~--------------- 81 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIK--------------- 81 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCG---------------
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCCh---------------
Confidence 34455566666654333 456677788888877776 343 3566666666666666554322
Q ss_pred ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398 432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF 511 (794)
Q Consensus 432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 511 (794)
+ +..+++|+.|+|++|++.+ +| .+..+++|+.|+|++|++.+ ++. +. .+
T Consensus 82 ---------~--l~~l~~L~~L~Ls~N~l~~----------------l~-~l~~l~~L~~L~Ls~N~l~~-l~~-l~-~l 130 (605)
T 1m9s_A 82 ---------P--LTNLKNLGWLFLDENKIKD----------------LS-SLKDLKKLKSLSLEHNGISD-ING-LV-HL 130 (605)
T ss_dssp ---------G--GGGCTTCCEEECCSSCCCC----------------CT-TSTTCTTCCEEECTTSCCCC-CGG-GG-GC
T ss_pred ---------h--hccCCCCCEEECcCCCCCC----------------Ch-hhccCCCCCEEEecCCCCCC-Ccc-cc-CC
Confidence 2 4555666666666666553 22 45566666666666666653 332 32 46
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398 512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591 (794)
Q Consensus 512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 591 (794)
++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..++
T Consensus 131 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~------------------------------- 175 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT------------------------------- 175 (605)
T ss_dssp TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT-------------------------------
T ss_pred CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC-------------------------------
Confidence 6666666666666654 456666666666666666664433 33322
Q ss_pred EEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccccccc
Q 046398 592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ 645 (794)
Q Consensus 592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 645 (794)
.|+.|+|++|++++. +.+..+++|+.|+|++|++++.
T Consensus 176 ---------------~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 176 ---------------KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ---------------TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred ---------------CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 236666666666642 2466666666667766666643
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.2e-16 Score=171.44 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=136.8
Q ss_pred CCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc-CCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398 489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC-RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567 (794)
Q Consensus 489 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 567 (794)
-+.+++++++++ .+|..+. +.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|.++++|
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L----- 90 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL----- 90 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-----
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-----
Confidence 368999999998 7887653 5799999999999988888887 99999999999999998877777665555
Q ss_pred ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647 (794)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 647 (794)
+.|||++|++++..+..|..+++|++|+|++|+|++..|
T Consensus 91 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 91 -----------------------------------------RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp -----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred -----------------------------------------CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence 899999999998878889999999999999999998889
Q ss_pred ccccccCCCCEEeCCCCcCcccCcccc---cCCCCCCEEeCcCCcccccC
Q 046398 648 ENIGNLISIESLDFSTNQLSSKISQSM---SSLSFLNHLNVSNNLLTGKI 694 (794)
Q Consensus 648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N~l~g~i 694 (794)
..|.++++|+.|+|++|++++..+..+ ..+++|+.|+|++|++++..
T Consensus 130 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 999999999999999999998666655 67999999999999998543
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2.7e-18 Score=200.30 Aligned_cols=261 Identities=20% Similarity=0.186 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCCCCCC-CCCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhcccccccee
Q 046398 31 CTDSEREALLKLKQDLKD-PSNRLGSWV-VDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGN 108 (794)
Q Consensus 31 ~~~~~~~~ll~~k~~~~~-~~~~~~~W~-~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~ 108 (794)
..+.++++|+++..+... ....-..|. .....+.|.++.++ ++++++++|.+. .+..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n------------------~~~~- 187 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFAN------------------GKDE- 187 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCC------------------CCCc-
Confidence 345677899999877642 122334674 34556789998886 468999998764 3332
Q ss_pred ecccccCCCCCCE-----EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccc
Q 046398 109 VNPSLVDLKHLTH-----LDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVH 183 (794)
Q Consensus 109 ~~~~l~~l~~L~~-----L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~ 183 (794)
.+..+.....|+. ++++.|.+. ..|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+.
T Consensus 188 ~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~---- 260 (727)
T 4b8c_D 188 ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT---- 260 (727)
T ss_dssp ------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS----
T ss_pred chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc----
Confidence 2222222222222 233334443 24677888888899999888887 67777778888888888887743
Q ss_pred cccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCC
Q 046398 184 SFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELG 263 (794)
Q Consensus 184 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~ 263 (794)
.+|..|+++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|.
T Consensus 261 -------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~--------------------- 310 (727)
T 4b8c_D 261 -------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW--------------------- 310 (727)
T ss_dssp -------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS---------------------
T ss_pred -------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh---------------------
Confidence 67878888888888888888887 45666777777777777777765 4444
Q ss_pred CCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCC------
Q 046398 264 GPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDN------ 337 (794)
Q Consensus 264 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n------ 337 (794)
.|.++++|+.|++++|.+++.+|..+..... ....+++++|.+++.+|. .|+.|+++.|
T Consensus 311 -----~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~ 375 (727)
T 4b8c_D 311 -----EFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----TGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQRE 375 (727)
T ss_dssp -----STTSCTTCCCEECTTSCCCSHHHHHHHHHHH----HHHHHHHHHCCCCCCCCC------C---------------
T ss_pred -----hhhcCCCccEEeCCCCccCCCChHHHhhcch----hhhHHhhccCcccCcCcc------ccceeEeecccccccc
Confidence 3444455555555555566555555543321 122356677777766654 3445555555
Q ss_pred --cCcCCCCCCcCCCCCCCEEEccCCccc
Q 046398 338 --CISGPLPPALGDLSSLTRLDLSRNMLN 364 (794)
Q Consensus 338 --~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 364 (794)
.+.+..+..+..+..++...++.|.+.
T Consensus 376 ~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 376 YDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------CCC
T ss_pred cCCccccccchhhcccccceeeeeccccc
Confidence 233333333445555666667777664
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.2e-17 Score=194.74 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=37.6
Q ss_pred ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcc
Q 046398 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF 559 (794)
Q Consensus 482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 559 (794)
.+..+++|++|+|++|+++ .+|..+. .+++|++|+|++|+++ .+|..|..+++|++|+|++|.++ .+|..|+++
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l 315 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL 315 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred hhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence 3334555555555555555 4554443 4555555555555555 44555555555555555555554 344444433
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1e-16 Score=155.14 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=108.0
Q ss_pred CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398 490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS 568 (794)
Q Consensus 490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 568 (794)
+.+++++|+++ .+|..+. .+++.|++++|++++..+. .+..+++|++|+|++|++++..|..|.++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 67788888775 6776553 3788888888888766654 47788888888888888887777777665554
Q ss_pred cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398 569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE 648 (794)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 648 (794)
++|+|++|++++..|..+..+++|++|+|++|++++.+|.
T Consensus 81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 7888888888888888888999999999999999988899
Q ss_pred cccccCCCCEEeCCCCcCcccCc
Q 046398 649 NIGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 649 ~l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
.+..+++|+.|+|++|++++..+
T Consensus 121 ~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 121 SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SSTTCTTCCEEECTTCCBCCSGG
T ss_pred HhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999999988665
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.2e-18 Score=196.98 Aligned_cols=87 Identities=28% Similarity=0.348 Sum_probs=75.2
Q ss_pred eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC-cccccCCCCCCEEeCc
Q 046398 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI-SQSMSSLSFLNHLNVS 686 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls 686 (794)
|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+|++|++++.+ |..+..+++|+.|+++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 378889999888 788888999999999999999985 67 7888999999999999998877 8888999999999999
Q ss_pred CCcccccCCCC
Q 046398 687 NNLLTGKIPSS 697 (794)
Q Consensus 687 ~N~l~g~iP~~ 697 (794)
+|++++.+|..
T Consensus 542 ~N~l~~~~~~~ 552 (567)
T 1dce_A 542 GNSLCQEEGIQ 552 (567)
T ss_dssp TSGGGGSSSCT
T ss_pred CCcCCCCccHH
Confidence 99998887754
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=9.7e-19 Score=197.70 Aligned_cols=122 Identities=21% Similarity=0.255 Sum_probs=88.9
Q ss_pred CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398 488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567 (794)
Q Consensus 488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 567 (794)
.|+.|++++|+++ .+|. +. .+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +| .++++++|
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L----- 510 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL----- 510 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC-----
T ss_pred CceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCC-----
Confidence 4777777777777 4665 44 6777888888888777 667777888888888888888775 44 44444433
Q ss_pred ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc-ChhhhcccCCCEEecccccccccC
Q 046398 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI-PMELTYLRGLQSLNLSHNIFTGQI 646 (794)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~i 646 (794)
+.|+|++|++++.+ |..++.+++|+.|+|++|.+++.+
T Consensus 511 -----------------------------------------~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 511 -----------------------------------------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -----------------------------------------CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -----------------------------------------cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 77888888888776 888888888888888888888654
Q ss_pred Ccc---ccccCCCCEEeC
Q 046398 647 PEN---IGNLISIESLDF 661 (794)
Q Consensus 647 p~~---l~~l~~L~~L~L 661 (794)
|.. +..+++|+.||+
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 432 334788888865
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.9e-16 Score=161.49 Aligned_cols=169 Identities=18% Similarity=0.244 Sum_probs=124.8
Q ss_pred ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504 (794)
Q Consensus 425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 504 (794)
.+..++++++.+.+.. .+..+++|+.|++++|+++. ++ .+..+++|++|++++|+++ .++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~----------------l~-~l~~l~~L~~L~L~~N~i~-~~~ 79 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS----------------LA-GMQFFTNLKELHLSHNQIS-DLS 79 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC----------------CT-TGGGCTTCCEEECCSSCCC-CCG
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc----------------ch-HHhhCCCCCEEECCCCccC-CCh
Confidence 4455555555555433 35667888888888888775 33 5677888888888888887 455
Q ss_pred hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC 584 (794)
Q Consensus 505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 584 (794)
. +. .+++|+.|++++|++++. |. +.. ++|++|++++|++++. + .+..
T Consensus 80 ~-l~-~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~-------------------------- 126 (263)
T 1xeu_A 80 P-LK-DLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIH-------------------------- 126 (263)
T ss_dssp G-GT-TCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTT--------------------------
T ss_pred h-hc-cCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcC--------------------------
Confidence 4 33 688888888888888864 32 233 8899999999988753 2 2333
Q ss_pred ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398 585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664 (794)
Q Consensus 585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 664 (794)
++.|+.|++++|++++. + .+..+++|+.|+|++|++++. ..+..+++|+.|++++|
T Consensus 127 --------------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 127 --------------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp --------------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred --------------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 33448889999998864 4 688899999999999999865 67889999999999999
Q ss_pred cCcccC
Q 046398 665 QLSSKI 670 (794)
Q Consensus 665 ~l~~~~ 670 (794)
++++..
T Consensus 183 ~~~~~~ 188 (263)
T 1xeu_A 183 KCVNEP 188 (263)
T ss_dssp EEECCC
T ss_pred cccCCc
Confidence 988753
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=144.48 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=48.9
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccC-CccccccCCCCEEeCCCCcCcccCc---ccccCCCCCCEEe
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI-PENIGNLISIESLDFSTNQLSSKIS---QSMSSLSFLNHLN 684 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ 684 (794)
+.|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|+
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 44555555555445555555666666666666666321 1556666666666666666665444 3566666666666
Q ss_pred CcCCccc
Q 046398 685 VSNNLLT 691 (794)
Q Consensus 685 ls~N~l~ 691 (794)
+++|.+.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 6666654
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=3.6e-16 Score=165.47 Aligned_cols=223 Identities=13% Similarity=0.101 Sum_probs=117.2
Q ss_pred CCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCC---CCCCCCchhhhccCC
Q 046398 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF---ELGGPIPTSFVRLCE 275 (794)
Q Consensus 199 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~---~~~~~~~~~l~~l~~ 275 (794)
+++|+.|++.+ .++.....+|.++++|+++++.+|.+. .++...|..+.++..+...... .........|.++..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56666666655 555555555666666666666666555 4444455555555555443100 011111222344444
Q ss_pred CC-EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCC
Q 046398 276 LT-SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT 354 (794)
Q Consensus 276 L~-~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 354 (794)
|+ .+++... +.++..+.... ....+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++|+
T Consensus 178 L~~~i~~~~~---~~l~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAM---GKLEDEIMKAG-LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTT---CCHHHHHHHTT-CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCC---CcHHHHHhhcc-cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 44 3333321 12222222110 1122455555554422111111112256677777776666655555666677777
Q ss_pred EEEccCCcccccCCccccCCCCCC-eEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEe
Q 046398 355 RLDLSRNMLNGSIPLSLGKISHLE-YLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL 430 (794)
Q Consensus 355 ~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 430 (794)
++++.+| ++...+.+|.++++|+ .+++.+ .++ .++...|.++++|+.++++.|.+.......|..+++|+.++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777666 5544555666677776 777766 454 55555677777777777767776666666666666776665
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=9.2e-16 Score=141.87 Aligned_cols=128 Identities=22% Similarity=0.260 Sum_probs=81.4
Q ss_pred CCCcEEEccccccc-ccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceee
Q 046398 512 TSLLILILRSNKFD-GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA 590 (794)
Q Consensus 512 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 590 (794)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------- 62 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------- 62 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------------------------------
Confidence 45556666666655 45555556666666666666666543 22222
Q ss_pred EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccccccc-CCccccccCCCCEEeCCCCcCccc
Q 046398 591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ-IPENIGNLISIESLDFSTNQLSSK 669 (794)
Q Consensus 591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ 669 (794)
++.|+.|++++|++++.+|..+..+++|++|++++|++++. .|..++.+++|+.|++++|++++.
T Consensus 63 --------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 63 --------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp --------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred --------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 22336666777777665666666677777777777777752 336677777777777777777766
Q ss_pred Cc---ccccCCCCCCEEeCcC
Q 046398 670 IS---QSMSSLSFLNHLNVSN 687 (794)
Q Consensus 670 ~p---~~l~~l~~L~~L~ls~ 687 (794)
.+ ..+..+++|++||+++
T Consensus 129 ~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 129 NDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHHHCCCcccccCCC
Confidence 55 4677777777777753
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=142.72 Aligned_cols=86 Identities=27% Similarity=0.297 Sum_probs=67.2
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
+.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|
T Consensus 57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 56666666666666666777888888888888888777777888888888888888888776667888888888888888
Q ss_pred cccccC
Q 046398 689 LLTGKI 694 (794)
Q Consensus 689 ~l~g~i 694 (794)
++.+..
T Consensus 137 ~~~C~c 142 (193)
T 2wfh_A 137 PLYCDC 142 (193)
T ss_dssp CEECSG
T ss_pred CeecCC
Confidence 887643
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.4e-15 Score=141.17 Aligned_cols=135 Identities=20% Similarity=0.172 Sum_probs=110.9
Q ss_pred CCCCCCEEEccCCccc-ccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccc
Q 046398 485 NFSNLEVLNLGDNEFV-GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMA 563 (794)
Q Consensus 485 ~l~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 563 (794)
..++|+.|++++|+++ +.+|..+. .+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L- 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL- 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC-
T ss_pred CcccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC-
Confidence 3478889999999887 67877654 688999999999998866 678889999999999999987777766555544
Q ss_pred ccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc-ChhhhcccCCCEEecccccc
Q 046398 564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI-PMELTYLRGLQSLNLSHNIF 642 (794)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l 642 (794)
+.|++++|++++.. +..+..+++|++|++++|.+
T Consensus 98 ---------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 98 ---------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp ---------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred ---------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 88899999998642 27888999999999999999
Q ss_pred cccCC---ccccccCCCCEEeCCCCcCcc
Q 046398 643 TGQIP---ENIGNLISIESLDFSTNQLSS 668 (794)
Q Consensus 643 ~~~ip---~~l~~l~~L~~L~Ls~N~l~~ 668 (794)
++..+ ..+..+++|+.|++++|.+..
T Consensus 133 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 133 TNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp GTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 95544 478999999999999999874
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=6.1e-15 Score=140.68 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=67.1
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 688 (794)
++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 55555555555444555677788888888888888666666788888888888888888766666788888888999999
Q ss_pred cccccCCC
Q 046398 689 LLTGKIPS 696 (794)
Q Consensus 689 ~l~g~iP~ 696 (794)
++++.+|.
T Consensus 135 ~~~~~~~~ 142 (177)
T 2o6r_A 135 PWDCSCPR 142 (177)
T ss_dssp CBCCCHHH
T ss_pred CeeccCcc
Confidence 88887764
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.6e-15 Score=137.85 Aligned_cols=129 Identities=21% Similarity=0.210 Sum_probs=105.4
Q ss_pred CCCCCEEEccCCccc-ccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccc
Q 046398 486 FSNLEVLNLGDNEFV-GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT 564 (794)
Q Consensus 486 l~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 564 (794)
.++|+.|++++|+++ +.+|..+. .+++|+.|++++|++++. ..+..+++|++|++++|++++.+|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-- 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL-- 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC--
T ss_pred CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC--
Confidence 367888888888887 67777554 688899999999988866 678889999999999999987777666555444
Q ss_pred cccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc-cChhhhcccCCCEEeccccccc
Q 046398 565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE-IPMELTYLRGLQSLNLSHNIFT 643 (794)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~ 643 (794)
+.|++++|++++. .+..++.+++|++|++++|.++
T Consensus 91 --------------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 91 --------------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp --------------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred --------------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 8889999999863 4578899999999999999999
Q ss_pred ccCC---ccccccCCCCEEeCCC
Q 046398 644 GQIP---ENIGNLISIESLDFST 663 (794)
Q Consensus 644 ~~ip---~~l~~l~~L~~L~Ls~ 663 (794)
+..+ ..++.+++|+.||+++
T Consensus 127 ~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 127 NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GSTTHHHHHHHHCTTCCEETTBC
T ss_pred chHHHHHHHHHHCCCcccccCCC
Confidence 6655 5789999999999874
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=9.4e-15 Score=154.49 Aligned_cols=286 Identities=11% Similarity=0.041 Sum_probs=154.7
Q ss_pred CccEEEeecccccccccccccC-CCCCCEEEccCCcCc--CCCCCCcCCCCCCCEEEccCCcccccCCccccC-------
Q 046398 304 ALESLVFSSSQISGHLTSQLGQ-FKSLRTLSLDDNCIS--GPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGK------- 373 (794)
Q Consensus 304 ~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------- 373 (794)
++++|.++++ +.......+.. +++|+.|||++|++. ...+. .++.++.+.+..|.+. +..|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccccc
Confidence 5566666553 11111122333 788999999999887 22222 2223455555555432 334555
Q ss_pred -CCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCE
Q 046398 374 -ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV 452 (794)
Q Consensus 374 -l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 452 (794)
+++|+.|++.+ .++ .++...|.++++|+.++++.|.+....+..|..+.++..+........
T Consensus 99 g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------------- 161 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--------------- 161 (329)
T ss_dssp ECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH---------------
T ss_pred ccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh---------------
Confidence 88888888888 676 677778888888888888888776655555554444444433221100
Q ss_pred EeccCCCCCCCcchhHHhccccceeccCcccCCCCCCC-EEEccCCcccccCChhhhh---cCCCCcEEEcccccccccC
Q 046398 453 LDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE-VLNLGDNEFVGKIPTWMGE---GFTSLLILILRSNKFDGFL 528 (794)
Q Consensus 453 L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~ip~~~~~---~l~~L~~L~L~~n~l~~~~ 528 (794)
.... ..-...|.++..|+ .+++.... .++..++. ...+++.+.+.++-.....
T Consensus 162 -----~~~~---------------~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 218 (329)
T 3sb4_A 162 -----RFKN---------------RWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADF 218 (329)
T ss_dssp -----HTST---------------TTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHH
T ss_pred -----hccc---------------cccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHH
Confidence 0000 00112233444444 33333321 22222221 1234444444443211110
Q ss_pred CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398 529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV 608 (794)
Q Consensus 529 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L 608 (794)
......+++|+.+++++|+++...+.+|.++++|
T Consensus 219 ~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---------------------------------------------- 252 (329)
T 3sb4_A 219 KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---------------------------------------------- 252 (329)
T ss_dssp HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC----------------------------------------------
T ss_pred HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC----------------------------------------------
Confidence 0001125566666666666664444555554444
Q ss_pred eEEEcCCCccccccChhhhcccCCC-EEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQ-SLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN 684 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 684 (794)
+.+++++| ++..-+..|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++...+..|.++++|+.+.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55566555 5544555677777777 777776 66645556777777777777777777777777777777777765
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=139.63 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=102.4
Q ss_pred CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccccc
Q 046398 490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH 569 (794)
Q Consensus 490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 569 (794)
+.+++++|+++ .+|..+ .++|+.|++++|+++ .+|..|..+++|++|++++|++++..+..|.++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 56777777776 677654 357888888888887 566778888888888888888887666666655544
Q ss_pred CCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcc
Q 046398 570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN 649 (794)
Q Consensus 570 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 649 (794)
+.|+|++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus 81 ---------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 121 (193)
T 2wfh_A 81 ---------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121 (193)
T ss_dssp ---------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ---------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence 77888888888777788899999999999999999666667
Q ss_pred ccccCCCCEEeCCCCcCccc
Q 046398 650 IGNLISIESLDFSTNQLSSK 669 (794)
Q Consensus 650 l~~l~~L~~L~Ls~N~l~~~ 669 (794)
|..+++|+.|+|++|++...
T Consensus 122 ~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 122 FNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTCTTCCEEECCSSCEECS
T ss_pred hhcCccccEEEeCCCCeecC
Confidence 88999999999999998753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2e-14 Score=137.06 Aligned_cols=133 Identities=19% Similarity=0.211 Sum_probs=105.2
Q ss_pred CCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398 489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS 568 (794)
Q Consensus 489 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 568 (794)
.+.+++++|+++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 467778888776 677543 3678888888888887666677888888888888888886655555554444
Q ss_pred cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398 569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE 648 (794)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 648 (794)
+.|++++|++++..+..+..+++|++|+|++|++++..+.
T Consensus 79 ----------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 79 ----------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp ----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 7888999999877777788899999999999999966566
Q ss_pred cccccCCCCEEeCCCCcCcccCc
Q 046398 649 NIGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 649 ~l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
.+..+++|+.|++++|++.+..|
T Consensus 119 ~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 119 IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCcccCEEEecCCCeeccCc
Confidence 67889999999999999988665
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=3.2e-16 Score=152.60 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=105.3
Q ss_pred CCCCCCEEEccCCcccccCCh------hhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhc
Q 046398 485 NFSNLEVLNLGDNEFVGKIPT------WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN 558 (794)
Q Consensus 485 ~l~~L~~L~Ls~n~l~~~ip~------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 558 (794)
....++.++++.+.++|.+|. .+. .+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 344566666666666666554 554 57788888888887776 45 6777788888888888776 44544433
Q ss_pred cccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecc
Q 046398 559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLS 638 (794)
Q Consensus 559 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls 638 (794)
++ .|+.|++++|++++ +| .+..+++|++|+++
T Consensus 92 ~~----------------------------------------------~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 92 AD----------------------------------------------TLEELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp HH----------------------------------------------HCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CC----------------------------------------------cCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 33 33777788887775 44 57777888888888
Q ss_pred cccccccCC-ccccccCCCCEEeCCCCcCcccCccc----------ccCCCCCCEEeCcCCcccc
Q 046398 639 HNIFTGQIP-ENIGNLISIESLDFSTNQLSSKISQS----------MSSLSFLNHLNVSNNLLTG 692 (794)
Q Consensus 639 ~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~g 692 (794)
+|++++..+ +.+..+++|+.|++++|++++.+|.. +..+++|+.|| +|+++.
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 888874322 46777888888888888887766653 67778888776 565553
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.7e-14 Score=134.29 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=46.3
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCc--cccccCCCCEEeCCCCcCcccCcc----cccCCCCCCE
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE--NIGNLISIESLDFSTNQLSSKISQ----SMSSLSFLNH 682 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~ 682 (794)
+.|++++|++++..+..+..+++|++|+|++|+++ .+|. .++.+++|+.|++++|+++. +|. .+..+++|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence 44444444444332233355666666666666664 4444 56666666666666666653 343 2666667777
Q ss_pred EeCcCCcccc
Q 046398 683 LNVSNNLLTG 692 (794)
Q Consensus 683 L~ls~N~l~g 692 (794)
||+++|....
T Consensus 145 Ld~~~n~~~~ 154 (176)
T 1a9n_A 145 LDFQKVKLKE 154 (176)
T ss_dssp ETTEECCHHH
T ss_pred eCCCcCCHHH
Confidence 7777666543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=5.6e-14 Score=133.80 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=113.1
Q ss_pred ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccc
Q 046398 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSA 561 (794)
Q Consensus 482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 561 (794)
.+.++++|+.|++++|+++ .+|. +....++|+.|++++|++++. ..+..+++|++|++++|++++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567899999999999998 6665 443455999999999999976 67899999999999999998765555555554
Q ss_pred ccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccCh--hhhcccCCCEEeccc
Q 046398 562 MATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPM--ELTYLRGLQSLNLSH 639 (794)
Q Consensus 562 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~--~l~~l~~L~~L~Ls~ 639 (794)
| +.|++++|+++ .+|. .+..+++|+.|++++
T Consensus 90 L----------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 90 L----------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp C----------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred C----------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence 4 88999999996 5666 789999999999999
Q ss_pred ccccccCCcc----ccccCCCCEEeCCCCcCcc
Q 046398 640 NIFTGQIPEN----IGNLISIESLDFSTNQLSS 668 (794)
Q Consensus 640 N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~~ 668 (794)
|.++ .+|.. +..+++|+.||+++|.+..
T Consensus 123 N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9998 66764 8999999999999998765
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=3.3e-12 Score=137.80 Aligned_cols=265 Identities=11% Similarity=0.119 Sum_probs=164.4
Q ss_pred CCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEE
Q 046398 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWF 405 (794)
Q Consensus 326 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 405 (794)
+..++.+.+.+ .++.....+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .+. .++...|.++++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 46777887765 3554555677764 7888888766 554555566663 688888875 454 5666677778888888
Q ss_pred ECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC
Q 046398 406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN 485 (794)
Q Consensus 406 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~ 485 (794)
++..|.++......|. +.+|+.+.+.++ ++. +-...|.+
T Consensus 186 ~l~~n~l~~I~~~aF~-------------------------~~~L~~l~lp~~-l~~---------------I~~~aF~~ 224 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-------------------------YAGIEEVLLPVT-LKE---------------IGSQAFLK 224 (401)
T ss_dssp ECTTSCCSEECTTTTT-------------------------TCCCSEEECCTT-CCE---------------ECTTTTTT
T ss_pred ecCCCcceEechhhEe-------------------------ecccCEEEeCCc-hhe---------------ehhhHhhC
Confidence 7777766544333332 345555555533 221 22345666
Q ss_pred CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCc-----ccCCchhhccc
Q 046398 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS-----GTMPGCVNNFS 560 (794)
Q Consensus 486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~ 560 (794)
|++|+.+++..| ++ .++...+.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+. ...+.+|.+|+
T Consensus 225 ~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 225 TSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp CTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 777777777664 33 555555543 66777777 34455455667777777777777776654 22233444443
Q ss_pred cccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccc
Q 046398 561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640 (794)
Q Consensus 561 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N 640 (794)
+| +.+++. +.++..-...|.++++|+.++|..|
T Consensus 301 ~L----------------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 301 KL----------------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TC----------------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred cC----------------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 33 555555 3355444556777777888877554
Q ss_pred cccccCCccccccCCCCEEeCCCCcCcccCcccccCCC-CCCEEeCcCCcc
Q 046398 641 IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS-FLNHLNVSNNLL 690 (794)
Q Consensus 641 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l 690 (794)
++..-+.+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 554555677777 788888888777766666676664 566777666543
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=4.5e-12 Score=136.81 Aligned_cols=264 Identities=11% Similarity=0.093 Sum_probs=161.0
Q ss_pred CCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046398 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL 382 (794)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 382 (794)
..++.+.+.. .++......|.++ +|+.+.+.++ ++.....+|.+ .+|+.+.+.. .+...-+.+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3677777765 4565666778875 7999999876 66566677887 4799999986 666566678999999999999
Q ss_pred cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCC
Q 046398 383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462 (794)
Q Consensus 383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 462 (794)
++|+++ .++...|. ..+|+.+.+..+ +.......|..+.+|+.+.+.++ +...-..+|.+ .+|+.+.+.+
T Consensus 188 ~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~----- 257 (401)
T 4fdw_A 188 SKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN----- 257 (401)
T ss_dssp TTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-----
T ss_pred CCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-----
Confidence 999998 78877887 589999999854 55555555656666666665542 22222333333 3444444422
Q ss_pred CcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc-----ccCCccccCCCC
Q 046398 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD-----GFLPIQLCRLTS 537 (794)
Q Consensus 463 ~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~ 537 (794)
.++ .++...+.++++|+.+++.+|.+. ...+.+|..+++
T Consensus 258 -----------------------------------~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 258 -----------------------------------GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp -----------------------------------TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred -----------------------------------Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 232 343333434444555554444432 233445556666
Q ss_pred CCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCc
Q 046398 538 LQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN 617 (794)
Q Consensus 538 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 617 (794)
|+.+++.+ .++..-..+|.++++| +.+++..|
T Consensus 302 L~~l~l~~-~i~~I~~~aF~~c~~L----------------------------------------------~~l~lp~~- 333 (401)
T 4fdw_A 302 LARFEIPE-SIRILGQGLLGGNRKV----------------------------------------------TQLTIPAN- 333 (401)
T ss_dssp CCEECCCT-TCCEECTTTTTTCCSC----------------------------------------------CEEEECTT-
T ss_pred CCeEEeCC-ceEEEhhhhhcCCCCc----------------------------------------------cEEEECcc-
Confidence 66666653 3443334444444444 34444322
Q ss_pred cccccChhhhcccCCCEEecccccccccCCccccccC-CCCEEeCCCCcC
Q 046398 618 FSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI-SIESLDFSTNQL 666 (794)
Q Consensus 618 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l 666 (794)
++..-+..|.++ +|+.+++++|.+....+..|..++ .++.|++..+.+
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 333344556666 667777776666644455555553 566666665544
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=5.2e-13 Score=126.05 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=79.1
Q ss_pred eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN 687 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 687 (794)
++.|++++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..+..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 47888888988888888899999999999999999977677789999999999999999988887899999999999999
Q ss_pred CcccccCCCC
Q 046398 688 NLLTGKIPSS 697 (794)
Q Consensus 688 N~l~g~iP~~ 697 (794)
|++++..+..
T Consensus 112 N~~~c~c~~l 121 (170)
T 3g39_A 112 NPWDCACSDI 121 (170)
T ss_dssp SCBCTTBGGG
T ss_pred CCCCCCchhH
Confidence 9998876643
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=1.4e-11 Score=133.48 Aligned_cols=56 Identities=7% Similarity=0.141 Sum_probs=26.5
Q ss_pred hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCE
Q 046398 624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNH 682 (794)
Q Consensus 624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 682 (794)
..|.++.+|+.+++..| ++..-..+|.++++|+.+++..+ ++ .+...|.+.++|+.
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 34455555555555544 44233345555555555555433 11 22334555554443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=5.8e-15 Score=143.61 Aligned_cols=136 Identities=18% Similarity=0.284 Sum_probs=118.7
Q ss_pred cCCCCcEEEcccccccccCCc------cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccc
Q 046398 510 GFTSLLILILRSNKFDGFLPI------QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD 583 (794)
Q Consensus 510 ~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 583 (794)
....++.++++.+.+.+.+|. .+..+++|++|++++|++++ +| .+.++++|
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L--------------------- 72 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL--------------------- 72 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC---------------------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC---------------------
Confidence 467888899999999988876 89999999999999999986 55 55554444
Q ss_pred cccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCC
Q 046398 584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFST 663 (794)
Q Consensus 584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 663 (794)
+.|++++|+++ .+|..+..+++|++|+|++|++++ +| .++.+++|+.|++++
T Consensus 73 -------------------------~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 73 -------------------------RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp -------------------------CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred -------------------------CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence 89999999998 788888889999999999999995 55 699999999999999
Q ss_pred CcCcccCc-ccccCCCCCCEEeCcCCcccccCCC
Q 046398 664 NQLSSKIS-QSMSSLSFLNHLNVSNNLLTGKIPS 696 (794)
Q Consensus 664 N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g~iP~ 696 (794)
|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99997543 5789999999999999999999876
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.5e-12 Score=123.28 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=74.2
Q ss_pred eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN 687 (794)
Q Consensus 608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 687 (794)
++.|++++|++++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+..+..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 47788888888877788888889999999999999865555678899999999999999987776788899999999999
Q ss_pred CcccccCCC
Q 046398 688 NLLTGKIPS 696 (794)
Q Consensus 688 N~l~g~iP~ 696 (794)
|++.+..+.
T Consensus 115 N~~~c~~~~ 123 (174)
T 2r9u_A 115 NPWDCECRD 123 (174)
T ss_dssp SCBCTTBGG
T ss_pred CCccccccc
Confidence 998876543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=2.9e-12 Score=120.87 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=44.6
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS 671 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 671 (794)
++|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|++....+
T Consensus 57 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 555555555554445556777788888888888886556668888888888888888876543
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=7.5e-11 Score=127.76 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=62.9
Q ss_pred ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398 605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN 684 (794)
Q Consensus 605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 684 (794)
...|+.+.+..+ ++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+++..| ++......|.++++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 344566666544 55455667889999999999754 66455678999999999999877 7777778899999999999
Q ss_pred CcCC
Q 046398 685 VSNN 688 (794)
Q Consensus 685 ls~N 688 (794)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8754
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=6.2e-12 Score=118.98 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=40.2
Q ss_pred eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCccc
Q 046398 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK 669 (794)
Q Consensus 609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 669 (794)
+.|+|++|++++..+..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus 60 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 4455555555544344456677777777777777754445577778888888888877754
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.5e-13 Score=146.98 Aligned_cols=192 Identities=18% Similarity=0.110 Sum_probs=118.4
Q ss_pred CCCCCEEeccCCCCCCCcchhHHhccccceeccCcccC-CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc
Q 046398 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK-NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525 (794)
Q Consensus 447 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 525 (794)
++.|+.|++++|.++......+ ...+. ..++|++|+|++|.+++.....+...+++|+.|+|++|.++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l-----------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVV-----------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHH-----------HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHH-----------HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 3568888888888775322221 12222 34689999999998875544455555678889999999887
Q ss_pred ccCCccc-----cCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchh
Q 046398 526 GFLPIQL-----CRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVE 600 (794)
Q Consensus 526 ~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 600 (794)
......+ ...++|++|+|++|.++..-...+. .
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~------------------------------------------~ 177 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM------------------------------------------E 177 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH------------------------------------------H
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH------------------------------------------H
Confidence 5443333 2467888888888887632111110 0
Q ss_pred hcccccceeEEEcCCCccccc----cChhhhcccCCCEEeccccccccc----CCccccccCCCCEEeCCCCcCcccCcc
Q 046398 601 YNSILNLVRIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSKISQ 672 (794)
Q Consensus 601 ~~~~l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 672 (794)
.....+.|++|||++|.+++. ++..+...++|++|+|++|.|++. ++..+...++|++|||++|.|+.....
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 111234457888888887653 345566677888888888888753 334455667888888888888765555
Q ss_pred cccCCCC-----CCEEe--CcCCccc
Q 046398 673 SMSSLSF-----LNHLN--VSNNLLT 691 (794)
Q Consensus 673 ~l~~l~~-----L~~L~--ls~N~l~ 691 (794)
.+..+.. |+.+. +..|.++
T Consensus 258 ~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 258 VLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHCC------CEEECCCC----CH
T ss_pred HHHHHhcCCCccchhhHhhhcCCccC
Confidence 5443321 55555 5555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=7.4e-13 Score=141.51 Aligned_cols=167 Identities=17% Similarity=0.129 Sum_probs=122.2
Q ss_pred CCCCCEEEccCCcccccCChhhhh----cCCCCcEEEcccccccccCCccc-cCCCCCCEEEccCCcCcccCCchhhccc
Q 046398 486 FSNLEVLNLGDNEFVGKIPTWMGE----GFTSLLILILRSNKFDGFLPIQL-CRLTSLQILDVANNSLSGTMPGCVNNFS 560 (794)
Q Consensus 486 l~~L~~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 560 (794)
.+.|+.|++++|.+++.....+.. ..++|+.|+|++|.++......+ ..+++|++|+|++|.++......+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~- 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL- 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH-
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH-
Confidence 367999999999987543333322 23689999999999875433333 245689999999999874433222110
Q ss_pred cccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc----ccChhhhcccCCCEEe
Q 046398 561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG----EIPMELTYLRGLQSLN 636 (794)
Q Consensus 561 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~ 636 (794)
+ ....+.|+.|+|++|.++. .++..+...++|++|+
T Consensus 150 -L---------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~ 189 (372)
T 3un9_A 150 -L---------------------------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189 (372)
T ss_dssp -H---------------------------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEE
T ss_pred -H---------------------------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEe
Confidence 0 0113457999999999975 3455567889999999
Q ss_pred ccccccccc----CCccccccCCCCEEeCCCCcCccc----CcccccCCCCCCEEeCcCCccccc
Q 046398 637 LSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSK----ISQSMSSLSFLNHLNVSNNLLTGK 693 (794)
Q Consensus 637 Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g~ 693 (794)
|++|.+++. +++.+...++|+.|+|++|.++.. ++..+...++|++|||++|++++.
T Consensus 190 Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 999999853 356678889999999999999864 445566779999999999998754
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=2.4e-09 Score=115.93 Aligned_cols=281 Identities=11% Similarity=0.134 Sum_probs=150.6
Q ss_pred ccccCCC-CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCC---CCCCCcccccCCccccccccCcccccccccccc
Q 046398 111 PSLVDLK-HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAE---FAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFS 186 (794)
Q Consensus 111 ~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~ 186 (794)
.+|.+++ .|+.+.+..+ ++.+ -...|.++++|+.+.+..|. ++..-..+|.++.+|+.+.+..+-.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~-------- 126 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVT-------- 126 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCS--------
T ss_pred hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccc--------
Confidence 4566774 5899988754 5543 34568889999999987653 5544556788888888887753311
Q ss_pred ccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC
Q 046398 187 WLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI 266 (794)
Q Consensus 187 ~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~ 266 (794)
..-...+..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+...++.. .+|+.+.+... .....
T Consensus 127 ---~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~--~~~i~ 197 (394)
T 4gt6_A 127 ---EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAK--VTRIG 197 (394)
T ss_dssp ---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTT--CCEEC
T ss_pred ---eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCc--ccccc
Confidence 112345777888888888643 44555666778888888887654 22 344434543 56777777522 22222
Q ss_pred chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCC
Q 046398 267 PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPA 346 (794)
Q Consensus 267 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 346 (794)
...+..+.+++............ .......+.........+.....+..+.+.. .++.....+
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~a 260 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAI----------------DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHA 260 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBS----------------SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTT
T ss_pred cchhhhccccceecccccccccc----------------cceeecccccccccccccccccccceEEcCC-cceEcccce
Confidence 34455666666665544332210 0000000000000001111223334444332 222233345
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCcccc
Q 046398 347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQL 426 (794)
Q Consensus 347 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L 426 (794)
|.++..|+.+.+..+... ....++.++++|+.+.+. +.+. .++...|.++.+|+.+.+..+ ++......|..+.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 666666666666544332 334455666666666664 2333 455556666666666666543 333333333333444
Q ss_pred ceEec
Q 046398 427 KTLLL 431 (794)
Q Consensus 427 ~~L~L 431 (794)
+.+.+
T Consensus 337 ~~i~i 341 (394)
T 4gt6_A 337 ERIAI 341 (394)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 44443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=8.4e-11 Score=125.12 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=67.3
Q ss_pred EEEcccc-cccccCCccccCCCCCCEEEccC-CcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEE
Q 046398 516 ILILRSN-KFDGFLPIQLCRLTSLQILDVAN-NSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV 593 (794)
Q Consensus 516 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 593 (794)
.++++++ ++++ +|. +..+++|++|+|++ |++++..+..|.++++|
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L------------------------------- 58 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL------------------------------- 58 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence 4566666 6663 565 77777777777775 77776655555544444
Q ss_pred EeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcc
Q 046398 594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS 668 (794)
Q Consensus 594 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 668 (794)
+.|||++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|+|++|++..
T Consensus 59 ---------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 59 ---------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ---------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ---------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 6667777777766666677777777777777777644444444444 7777777777664
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.09 E-value=7.6e-09 Score=111.91 Aligned_cols=322 Identities=10% Similarity=0.094 Sum_probs=162.1
Q ss_pred ccEEEeecccccccccccccCCCCCCEEEccCCc---CcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046398 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNC---ISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLD 381 (794)
Q Consensus 305 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 381 (794)
|+.+.+..+ ++.....+|.++++|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++......+..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 444444332 444445566777777777776553 44334456666677776666543 3323344566677777777
Q ss_pred ccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCC
Q 046398 382 LSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARIS 461 (794)
Q Consensus 382 Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 461 (794)
+..+. . .+....|..+.+|+.+.+..+ +.......|. ...|+.+.+...- .......+..+.+++......+...
T Consensus 144 lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 144 IPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp CCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhccccceecccccccc
Confidence 75432 2 455556777777777777654 2323333332 3456666654431 1223344556666666665544332
Q ss_pred CCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEE
Q 046398 462 DTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL 541 (794)
Q Consensus 462 ~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 541 (794)
.. ...+...... .......+.....+..+.+... ++ .+....+.++..|+.+.+.++... ....+|.++++|+.+
T Consensus 219 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i 293 (394)
T 4gt6_A 219 AI-DNVLYEKSAN-GDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDI 293 (394)
T ss_dssp BS-SSCEEEECTT-SCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEE
T ss_pred cc-cceeeccccc-ccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCcccccccccccc
Confidence 10 0000000000 0000001112233344444322 22 344444446677777777654332 344566777777777
Q ss_pred EccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc
Q 046398 542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE 621 (794)
Q Consensus 542 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 621 (794)
++. +.++.....+|.++.+| +.+++..+ ++..
T Consensus 294 ~l~-~~i~~I~~~aF~~c~~L----------------------------------------------~~i~lp~~-v~~I 325 (394)
T 4gt6_A 294 EFS-SRITELPESVFAGCISL----------------------------------------------KSIDIPEG-ITQI 325 (394)
T ss_dssp ECC-TTCCEECTTTTTTCTTC----------------------------------------------CEEECCTT-CCEE
T ss_pred cCC-CcccccCceeecCCCCc----------------------------------------------CEEEeCCc-ccEe
Confidence 775 33443444455555555 44455432 3333
Q ss_pred cChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398 622 IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690 (794)
Q Consensus 622 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 690 (794)
-...|.++.+|+.+.|..+ ++..-..+|.++++|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 4456777778888877644 553334567778888888887775432 3456667777777665543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=4.6e-10 Score=119.38 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=78.2
Q ss_pred EEeCCCC-CCCCCCCCcccCCCCCCCEEEcCC-CCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCC
Q 046398 121 HLDLSGN-DFQGIRIPKYLGSLKNLRYLNLSG-AEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGN 198 (794)
Q Consensus 121 ~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~ 198 (794)
.++++++ +++ .+|. +..+++|++|+|++ |.+++..|..|+++++|++|+|++|. +++..|..|.+
T Consensus 12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~----------l~~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----------LRFVAPDAFHF 78 (347)
T ss_dssp CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC----------CCEECTTGGGS
T ss_pred EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc----------cceeCHHHhcC
Confidence 4577877 787 4677 88888888888885 88887777778888888888888776 34455667778
Q ss_pred CCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCC
Q 046398 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237 (794)
Q Consensus 199 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 237 (794)
+++|++|+|++|++++.++..+..++ |++|++.+|.+.
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 88888888888888777766666655 777777777765
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=3.3e-09 Score=112.14 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=89.3
Q ss_pred cccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc--CCCCCCEEEccCC--cCcccCCchh
Q 046398 481 ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC--RLTSLQILDVANN--SLSGTMPGCV 556 (794)
Q Consensus 481 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N--~l~~~~p~~~ 556 (794)
..+..+|+|+.|++++|.-. .++. + ..++|+.|+|..|.+.......+. .+++|+.|+|+.+ ...+.. .+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hH
Confidence 33455677777777766311 2333 2 266777777777766543323333 5677777776531 111100 00
Q ss_pred hccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhh---cccCCC
Q 046398 557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT---YLRGLQ 633 (794)
Q Consensus 557 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~---~l~~L~ 633 (794)
..+..+ .....++.|+.|+|++|.+.+..+..+. .+++|+
T Consensus 240 ~~l~~~-------------------------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~ 282 (362)
T 2ra8_A 240 NVFRPL-------------------------------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282 (362)
T ss_dssp GGTGGG-------------------------------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS
T ss_pred HHHHHH-------------------------------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC
Confidence 000000 0001245667777877777654444443 366778
Q ss_pred EEeccccccccc----CCccccccCCCCEEeCCCCcCcccCcccccC-CCCCCEEeCcCCc
Q 046398 634 SLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSKISQSMSS-LSFLNHLNVSNNL 689 (794)
Q Consensus 634 ~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~N~ 689 (794)
+|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. + ...++++.++
T Consensus 283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888887777653 3444556777888888877776544333433 2 3556777665
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=1.2e-06 Score=93.96 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=39.9
Q ss_pred ChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398 623 PMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686 (794)
Q Consensus 623 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 686 (794)
...|.++++|+.+++.++.++..-..+|.++++|+.++|..+ ++......|.++++|+.+.+.
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 344566677777777766666444556777777777777544 554555667777777766553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=8e-09 Score=109.21 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=51.1
Q ss_pred ccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc----ccccccCCCCCCEEEccCCcCcCCCCCCc
Q 046398 272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH----LTSQLGQFKSLRTLSLDDNCISGPLPPAL 347 (794)
Q Consensus 272 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 347 (794)
.+++|+.|++.+|.+.+..+..+... ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a--~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLES--DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHC--SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhC--ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 35677777777776665444333321 1234777788877777663 23333456788888888887764332223
Q ss_pred CC-CCCCCEEEccCCc
Q 046398 348 GD-LSSLTRLDLSRNM 362 (794)
Q Consensus 348 ~~-l~~L~~L~Ls~n~ 362 (794)
.. + ...++++.++
T Consensus 328 ~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHC--CSEEECCSBC
T ss_pred HHHc--CCEEEecCCc
Confidence 22 1 3567777765
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.69 E-value=1.1e-06 Score=94.42 Aligned_cols=71 Identities=8% Similarity=0.061 Sum_probs=46.7
Q ss_pred ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCC
Q 046398 605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSL 677 (794)
Q Consensus 605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 677 (794)
+.+|+.+++.++.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-...|.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 344467777777776555667788888888888654 55344567888888888877654 544444555544
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=9.6e-08 Score=90.97 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=44.3
Q ss_pred eEEEcCCCccccc----cChhhhcccCCCEEeccccccccc----CCccccccCCCCEEeC--CCCcCccc----Ccccc
Q 046398 609 RIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDF--STNQLSSK----ISQSM 674 (794)
Q Consensus 609 ~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----~p~~l 674 (794)
++|||++|++... +...+...++|++|+|++|.|+.. +.+.+...++|++|+| ++|.+... +...+
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L 147 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 4444444444321 223334445566666666666532 2344555566666666 56666543 23344
Q ss_pred cCCCCCCEEeCcCCccc
Q 046398 675 SSLSFLNHLNVSNNLLT 691 (794)
Q Consensus 675 ~~l~~L~~L~ls~N~l~ 691 (794)
...++|++|++++|.+.
T Consensus 148 ~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEeccCCCCC
Confidence 44566777777777654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=1.7e-07 Score=93.77 Aligned_cols=84 Identities=25% Similarity=0.304 Sum_probs=64.3
Q ss_pred EEcCCCccc---cccChhhhcccCCCEEecccccccc--cCCccccccCCCCEEeCCCCcCcccCcccccCCC--CCCEE
Q 046398 611 IDVSKNNFS---GEIPMELTYLRGLQSLNLSHNIFTG--QIPENIGNLISIESLDFSTNQLSSKISQSMSSLS--FLNHL 683 (794)
Q Consensus 611 LdLs~N~l~---~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 683 (794)
++++.|+.. +.++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777433 2233333568899999999999987 5667788999999999999999875 3344444 89999
Q ss_pred eCcCCcccccCCC
Q 046398 684 NVSNNLLTGKIPS 696 (794)
Q Consensus 684 ~ls~N~l~g~iP~ 696 (794)
+|++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998874
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=4.5e-07 Score=90.67 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=67.4
Q ss_pred cccceeEEEcCCCcccc--ccChhhhcccCCCEEecccccccccCCccccccC--CCCEEeCCCCcCcccCcc-------
Q 046398 604 ILNLVRIIDVSKNNFSG--EIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI--SIESLDFSTNQLSSKISQ------- 672 (794)
Q Consensus 604 ~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~~p~------- 672 (794)
.++.|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. +.+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46789999999999998 5678888999999999999999965 4466666 999999999999987763
Q ss_pred cccCCCCCCEEe
Q 046398 673 SMSSLSFLNHLN 684 (794)
Q Consensus 673 ~l~~l~~L~~L~ 684 (794)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467889999887
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=2.5e-07 Score=88.01 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=37.0
Q ss_pred ceeEEEcCCCccccc----cChhhhcccCCCEEec--cccccccc----CCccccccCCCCEEeCCCCcCc
Q 046398 607 LVRIIDVSKNNFSGE----IPMELTYLRGLQSLNL--SHNIFTGQ----IPENIGNLISIESLDFSTNQLS 667 (794)
Q Consensus 607 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~ 667 (794)
.|+.|+|++|.+... +...+...++|++|+| ++|.++.. +.+.+...++|+.|+|++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 345666666666542 3444555667777777 66777643 2334445577777777777764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=3.7e-06 Score=77.76 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=69.2
Q ss_pred ceeEEEcCCCccccccChhhhcccCCCEEeccccc-ccccCCcccccc----CCCCEEeCCCCc-CcccCcccccCCCCC
Q 046398 607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI-FTGQIPENIGNL----ISIESLDFSTNQ-LSSKISQSMSSLSFL 680 (794)
Q Consensus 607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 680 (794)
.|+.||++++.++..--..+..+++|++|+|++|. ++..--..++.+ ++|++|+|++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57999999999987766778899999999999995 776544455554 479999999985 887666778899999
Q ss_pred CEEeCcCCc
Q 046398 681 NHLNVSNNL 689 (794)
Q Consensus 681 ~~L~ls~N~ 689 (794)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=2.5e-05 Score=72.24 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=51.4
Q ss_pred CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccC-CCCCCCccccCCC----CCCcEEEccCCCCCCCCCchhhhccC
Q 046398 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG-LQGTISSIGLENL----TSIKTIDLSLNFELGGPIPTSFVRLC 274 (794)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l----~~L~~L~L~~~~~~~~~~~~~l~~l~ 274 (794)
.+|++||++++.++......+..+++|++|+|++|. +++.--. .+..+ ++|++|+++++..++..--..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 456777777776666655566677777777777764 4322111 23332 35777777655556555555566677
Q ss_pred CCCEEEccCCC
Q 046398 275 ELTSIDVSDVK 285 (794)
Q Consensus 275 ~L~~L~l~~~~ 285 (794)
+|+.|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.98 E-value=0.00043 Score=65.15 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=32.7
Q ss_pred hhcccCCCEEeccccccccc----CCccccccCCCCEEeCCCC---cCcc----cCcccccCCCCCCEEeCcCCcc
Q 046398 626 LTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTN---QLSS----KISQSMSSLSFLNHLNVSNNLL 690 (794)
Q Consensus 626 l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~ls~N~l 690 (794)
+..-+.|++|+|++|.|+.. +-+.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|..
T Consensus 94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33445556666666655432 1223344455666666544 2222 2334445556666666666543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0017 Score=57.06 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=25.3
Q ss_pred eEEEcCCCccc-cccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcC
Q 046398 609 RIIDVSKNNFS-GEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQL 666 (794)
Q Consensus 609 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 666 (794)
..+|.+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34555555554 23443221 2445555555555533333344444444444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.63 E-value=0.0025 Score=55.95 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=50.0
Q ss_pred CEEeccccccc-ccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccc
Q 046398 633 QSLNLSHNIFT-GQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG 692 (794)
Q Consensus 633 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 692 (794)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47999999997 46776543 479999999999999888889999999999999999864
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.51 E-value=0.0015 Score=61.40 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=64.9
Q ss_pred cccceeEEEcCCC-cccc----ccChhhhcccCCCEEeccccccccc----CCccccccCCCCEEeCCCCcCccc----C
Q 046398 604 ILNLVRIIDVSKN-NFSG----EIPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSK----I 670 (794)
Q Consensus 604 ~l~~L~~LdLs~N-~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~ 670 (794)
.-+.|+.|+|++| ++.. .+.+.+..-+.|+.|+|++|+|... +-+.+..-+.|+.|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567899999986 7754 2455667778999999999999753 334455678999999999999864 3
Q ss_pred cccccCCCCCCEEeCcCC
Q 046398 671 SQSMSSLSFLNHLNVSNN 688 (794)
Q Consensus 671 p~~l~~l~~L~~L~ls~N 688 (794)
-+.+..-+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 445666678999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.12 E-value=88 Score=25.08 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=30.1
Q ss_pred cccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCC
Q 046398 314 QISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361 (794)
Q Consensus 314 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 361 (794)
.++..-...|.+|++|+.+.|-.+ ++.....+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344445566777777777777653 44455566777777777777653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.44 E-value=84 Score=25.20 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=25.3
Q ss_pred cCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046398 338 CISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN 384 (794)
Q Consensus 338 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 384 (794)
.++.....+|.++.+|+.+.|-.+ ++..-..+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444456666666666666543 2323344566666666666554
Done!