BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046401
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRLNN----NMKPCNDLVTRLEVSEGLTECWNTLME 59
+H F + L I +IANAT+R DR N P LV ++ + + +L++
Sbjct: 117 EHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVD 176
Query: 60 L 60
Sbjct: 177 F 177
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRLNN----NMKPCNDLVTRLEVSEGLTECWNTLME 59
+H F + L I +IANAT+R DR N P LV ++ + + +L++
Sbjct: 150 EHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVD 209
Query: 60 L 60
Sbjct: 210 F 210
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRL 30
+H F + L I +IANAT+R DR
Sbjct: 128 EHTIFASNTSSLQITSIANATTRQDRF 154
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRL 30
+H F + L I +IANAT+R DR
Sbjct: 128 EHTIFASNTSSLQITSIANATTRQDRF 154
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRL 30
+H F + L I +IANAT+R DR
Sbjct: 128 EHTIFASNTSSLQITSIANATTRQDRF 154
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRL 30
+H F + L I +IANAT+R DR
Sbjct: 128 EHTIFASNTSSLQITSIANATTRQDRF 154
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRL 30
+H F + L I +IANAT+R DR
Sbjct: 128 EHTIFASNTSSLQITSIANATTRQDRF 154
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 4 KHVFFILAFTCLIIANIANATSRNDRL 30
+H F + L I +IANAT+R DR
Sbjct: 128 EHTIFASNTSSLQITSIANATTRQDRF 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,108,406
Number of Sequences: 62578
Number of extensions: 101725
Number of successful extensions: 266
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 8
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)