Query 046401
Match_columns 127
No_of_seqs 41 out of 43
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 20:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idw_A Actin cytoskeleton-regu 47.7 7.9 0.00027 26.4 1.5 16 83-100 41-56 (72)
2 3nrr_A Dihydrofolate reductase 15.7 96 0.0033 27.1 3.0 39 59-98 282-333 (515)
3 3irm_A Bifunctional dihydrofol 12.5 1.2E+02 0.0039 26.7 2.6 39 59-98 288-339 (521)
4 3ed7_A Tsase, TS, thymidylate 11.5 62 0.0021 26.6 0.5 39 59-98 62-113 (295)
5 1ixs_A Holliday junction DNA h 10.6 79 0.0027 19.9 0.7 18 85-102 23-41 (62)
6 3c8l_A FTSZ-like protein of un 10.6 77 0.0026 23.2 0.7 16 78-93 35-50 (122)
7 3kgb_A Thymidylate synthase 1/ 9.8 1.2E+02 0.0042 24.8 1.7 39 59-98 60-110 (294)
8 2dah_A Ubiquilin-3; UBA domain 9.8 96 0.0033 19.0 0.9 20 84-103 14-35 (54)
9 2knp_A Mcocc-1; disulfide-rich 9.0 36 0.0012 20.1 -1.3 13 78-90 16-28 (33)
10 3ilk_A Uncharacterized tRNA/RR 8.9 94 0.0032 24.0 0.7 21 84-104 211-231 (244)
No 1
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=47.75 E-value=7.9 Score=26.38 Aligned_cols=16 Identities=50% Similarity=0.939 Sum_probs=13.9
Q ss_pred hhHhhhcCCCcchhhhhh
Q 046401 83 PAMLTSLGFTAEEGNILR 100 (127)
Q Consensus 83 P~Ml~slGFT~eE~diLr 100 (127)
|.+|-.||++ ||||+|
T Consensus 41 ~~~Lr~LGi~--eGDIIr 56 (72)
T 3idw_A 41 NSMLRTLGLR--EGDIVR 56 (72)
T ss_dssp HHHHHHTTCC--HHHHHH
T ss_pred HHHHHHcCCc--hhhHHH
Confidence 3789999998 899997
No 2
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=15.65 E-value=96 Score=27.12 Aligned_cols=39 Identities=28% Similarity=0.624 Sum_probs=28.8
Q ss_pred hcchhHHHHHHHHhcCcCC-----CCCc--hhh-----HhhhcCCCcc-hhhh
Q 046401 59 ELKSCSNEIVIFFLNSQAD-----TRNC--WPA-----MLTSLGFTAE-EGNI 98 (127)
Q Consensus 59 elksCt~EIvlFFLnGet~-----~~~C--WP~-----Ml~slGFT~e-E~di 98 (127)
.+|+...|++- ||.|+|. .+.| |=+ -+.+.||++. |||+
T Consensus 282 ~~k~~i~EllW-fl~g~tn~~~l~~~g~~iWd~n~~~~wl~~~~~~~~~~gdl 333 (515)
T 3nrr_A 282 ALRSIIEELLW-FIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDL 333 (515)
T ss_dssp CHHHHHHHHHH-HHTTCCBTHHHHTTTCCTTHHHHSHHHHHHTTCTTSCTTBC
T ss_pred chhhhHHHHHH-HHhCCccHHHHHHcCCeecCCcchhhhhhhcCCccccCCcC
Confidence 45778888765 6799999 5555 875 8999999864 4554
No 3
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=12.50 E-value=1.2e+02 Score=26.66 Aligned_cols=39 Identities=26% Similarity=0.503 Sum_probs=28.5
Q ss_pred hcchhHHHHHHHHhcCcCC-----CCCc--hhh-----HhhhcCCCc-chhhh
Q 046401 59 ELKSCSNEIVIFFLNSQAD-----TRNC--WPA-----MLTSLGFTA-EEGNI 98 (127)
Q Consensus 59 elksCt~EIvlFFLnGet~-----~~~C--WP~-----Ml~slGFT~-eE~di 98 (127)
.+|+...|++- ||.|+|. .+.| |=. -+.++||++ ||||+
T Consensus 288 ~~k~~i~EllW-fl~g~tn~~~l~~~g~~iWd~~~~~~~l~~~~~~~~~~gdl 339 (521)
T 3irm_A 288 FWRGVCEELLW-FLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDL 339 (521)
T ss_dssp CHHHHHHHHHH-HHTTCCBTHHHHTTTCCTTSTTTSHHHHHHTTCTTSCTTBC
T ss_pred chhHHHHHHHH-HHhCCCcHHHHHhcCCeecCcccchhhhhhcCCccccCCcc
Confidence 45678888765 5799998 4555 774 899999996 44554
No 4
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=11.49 E-value=62 Score=26.63 Aligned_cols=39 Identities=31% Similarity=0.704 Sum_probs=26.2
Q ss_pred hcchhHHHHHHHHhcCcCC-----CCCc--hh-----hHhhhcCCCc-chhhh
Q 046401 59 ELKSCSNEIVIFFLNSQAD-----TRNC--WP-----AMLTSLGFTA-EEGNI 98 (127)
Q Consensus 59 elksCt~EIvlFFLnGet~-----~~~C--WP-----~Ml~slGFT~-eE~di 98 (127)
.+|+...|++- ||.|+|. .+.| |= +.+.+.||+. ||||+
T Consensus 62 ~~k~ii~ELLW-fl~G~tn~~~L~~~gv~IWd~~~~~~~~~~~g~~~~e~Gdl 113 (295)
T 3ed7_A 62 FWKGVLEELLW-FIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDL 113 (295)
T ss_dssp CHHHHHHHHHH-HHTTCCBGGGGCC-----CCSCSSCCGGGGSCHHHHHTTBC
T ss_pred cHHHHHHHHHH-HHhCCccHHHHHHcCCcccccchhhhhhhcccCCccCCCcC
Confidence 46778888765 5999998 3444 43 4789999985 55665
No 5
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=10.63 E-value=79 Score=19.88 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=13.2
Q ss_pred HhhhcCCCcchhh-hhhhc
Q 046401 85 MLTSLGFTAEEGN-ILRGY 102 (127)
Q Consensus 85 Ml~slGFT~eE~d-iLrGy 102 (127)
-|.+|||+..|++ +++..
T Consensus 23 AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 23 ALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 4678999999986 45544
No 6
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=10.57 E-value=77 Score=23.21 Aligned_cols=16 Identities=19% Similarity=0.435 Sum_probs=14.3
Q ss_pred CCCchhhHhhhcCCCc
Q 046401 78 TRNCWPAMLTSLGFTA 93 (127)
Q Consensus 78 ~~~CWP~Ml~slGFT~ 93 (127)
.|+|-|.++..+|++.
T Consensus 35 ~~nslp~~~~~~g~~~ 50 (122)
T 3c8l_A 35 AHNALPGVWEVAGLSH 50 (122)
T ss_dssp TTCCCSSHHHHHTCSS
T ss_pred hhhcchhHHHHCCCCC
Confidence 8999999999999953
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=9.80 E-value=1.2e+02 Score=24.82 Aligned_cols=39 Identities=31% Similarity=0.727 Sum_probs=16.7
Q ss_pred hcchhHHHHHHHHhcCcCC-----CCCc--hh-----hHhhhcCCCcchhhh
Q 046401 59 ELKSCSNEIVIFFLNSQAD-----TRNC--WP-----AMLTSLGFTAEEGNI 98 (127)
Q Consensus 59 elksCt~EIvlFFLnGet~-----~~~C--WP-----~Ml~slGFT~eE~di 98 (127)
.+|+...|+. -||.|++. ++.| |= +-+.+.||..||||+
T Consensus 60 ~~k~ii~ELL-Wfl~G~tn~~~L~~~gv~IWd~~~~~~~~~~~~~~~e~Gdl 110 (294)
T 3kgb_A 60 FYRGVVEELL-FFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGIDREEGDL 110 (294)
T ss_dssp CHHHHHHHHH-HHHTTCCCTHHHHTTTCC---------------------CC
T ss_pred cHHHHHHHHH-HHHhCCccHHHHHhcCCCccccchhhhhhhcccccccCCCC
Confidence 4567788865 56889998 4444 54 368899997777776
No 8
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=9.80 E-value=96 Score=19.01 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=14.6
Q ss_pred hHhhhcCCCcchh--hhhhhcc
Q 046401 84 AMLTSLGFTAEEG--NILRGYC 103 (127)
Q Consensus 84 ~Ml~slGFT~eE~--diLrGyC 103 (127)
+.|...||+.++. ..|+...
T Consensus 14 ~~L~~MGF~d~~~n~~AL~~~~ 35 (54)
T 2dah_A 14 EQLRSMGFLNREANLQALIATG 35 (54)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHT
T ss_pred HHHHHcCCCcHHHHHHHHHHcC
Confidence 5788899999875 5566543
No 9
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=9.01 E-value=36 Score=20.10 Aligned_cols=13 Identities=31% Similarity=1.027 Sum_probs=9.2
Q ss_pred CCCchhhHhhhcC
Q 046401 78 TRNCWPAMLTSLG 90 (127)
Q Consensus 78 ~~~CWP~Ml~slG 90 (127)
+-+|||..-+-+|
T Consensus 16 gcrcwptvtpgvg 28 (33)
T 2knp_A 16 GCRCWPTVTPGVG 28 (33)
T ss_dssp SCCEEECSSTTEE
T ss_pred ceeeccccCCCee
Confidence 5689998766554
No 10
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=8.90 E-value=94 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=18.6
Q ss_pred hHhhhcCCCcchhhhhhhccc
Q 046401 84 AMLTSLGFTAEEGNILRGYCD 104 (127)
Q Consensus 84 ~Ml~slGFT~eE~diLrGyCd 104 (127)
.||.-.+.|.+|.++|||.|.
T Consensus 211 ~l~~Ra~~~~~E~~~LrGi~~ 231 (244)
T 3ilk_A 211 RLYYRAKLEKNELNILNGMLS 231 (244)
T ss_dssp HHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHH
Confidence 678888999999999999874
Done!