BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046402
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 91 KDFLSQTNLNFCPICLNPELTIGVGRHSDVSTLTVLLQDSIGGF--YVRGNDGESWIDVH 148
++ L Q +N+ P C PEL +GV H+DVS LT +L + + G + G W+
Sbjct: 206 EELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK----WVTAK 261
Query: 149 PIDGSLLINIGDALQILSNGRYKSVEHCVVASGSKNSISVPIFINPRPQDTIC--PLPEV 206
+ S++++IGD L+ILSNG+YKS+ H + + K IS +F P P+D I PLPE+
Sbjct: 262 CVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLKPLPEM 320
Query: 207 LASGEKPIYKPVLYSDYVKH 226
++ + P ++ +++H
Sbjct: 321 VSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 9/140 (6%)
Query: 91 KDFLSQTNLNFCPICLNPELTIGVGRHSDVSTLTVLLQDSIGGF--YVRGNDGESWIDVH 148
++ L Q +N+ P C PEL +GV H+DVS LT +L + + G + G W+
Sbjct: 205 EELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK----WVTAK 260
Query: 149 PIDGSLLINIGDALQILSNGRYKSVEHCVVASGSKNSISVPIFINPRPQDTIC--PLPEV 206
+ S++++IGD L+ILSNG+YKS+ H + + K IS +F P P+D I PLPE+
Sbjct: 261 CVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLKPLPEM 319
Query: 207 LASGEKPIYKPVLYSDYVKH 226
++ + P ++ +++H
Sbjct: 320 VSVESPAKFPPRTFAQHIEH 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 91 KDFLSQTNLNFCPICLNPELTIGVGRHSDVSTLTVLLQDSIGGF--YVRGNDGESWIDVH 148
++ L Q +N+ P C PEL +GV H+DVS LT +L + + G + G W+
Sbjct: 206 EELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGK----WVTAK 261
Query: 149 PIDGSLLINIGDALQILSNGRYKSVEHCVVASGSKNSISVPIFINPRPQDTIC--PLPEV 206
+ S++ +IGD L+ILSNG+YKS+ H + + K IS +F P P+D I PLPE
Sbjct: 262 CVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP-PKDKIVLKPLPEX 320
Query: 207 LASGEKPIYKPVLYSDYVKH 226
++ + P ++ +++H
Sbjct: 321 VSVESPAKFPPRTFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 97 TNLNFCPICLNPELTIGVGRHSDVSTLTVLLQDS-IGGFYVRGNDGESWIDVHPIDGSLL 155
T ++ P C P+L G+ H+D + +L QD + G + DG+ WIDV P S++
Sbjct: 157 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGQ-WIDVPPXRHSIV 214
Query: 156 INIGDALQILSNGRYKSVEHCVVASGSKNSISVPIFINPRPQDTICPLPEVL---ASGEK 212
+N+GD L++++NG+YKSV H V+A S+ F NP I P P ++ A K
Sbjct: 215 VNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENK 274
Query: 213 PIYKPVLYSDYVK 225
+Y ++ DY K
Sbjct: 275 QVYPKFVFDDYXK 287
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 99 LNFCPICLNPEL-TIGVGRHSDVSTLTVLLQDSIGGFYVRGNDGESWIDVHPIDGSLLIN 157
L++ P + E I H D++ +TVL + G V+ DG SW+DV G+++IN
Sbjct: 155 LHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDG-SWLDVPSDFGNIIIN 213
Query: 158 IGDALQILSNGRYKSVEHCVV----ASGSKNSISVPIFINPRP 196
IGD LQ S+G + S H V+ +K+ IS+P+F++P P
Sbjct: 214 IGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP 256
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 99 LNFCPICLNPELTIGV--GRHSDVSTLTVLLQDSIGGFYVRGNDGESWIDVHPIDGSLLI 156
L++ PI P+ GV G H D++T+T+LL GG V DG+ W+ ++P G L+I
Sbjct: 174 LHYPPI---PKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQ-WLPINPPPGCLVI 229
Query: 157 NIGDALQILSNGRYKSVEHCVV 178
NIGD L+ L+N S H VV
Sbjct: 230 NIGDXLERLTNNVLPSTVHRVV 251
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 117 HSDVSTLTVLLQDSIGGFYVRGNDGESWIDVHPIDGSLLINIGDALQILSNGRYKSVEHC 176
H DVS +TVL Q ++ V G + D+ D LIN G + L+N YK+ H
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAG--YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR 271
Query: 177 VVASGSKNSISVPIFINPRPQDTICPLPEVLASGEKPIYKPVLYSDYVKH 226
V ++ S+P F+N I P +G K +P+ Y DY+++
Sbjct: 272 VKWVNAERQ-SLPFFVNLGYDSVIDPFDPREPNG-KSDREPLSYGDYLQN 319
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 117 HSDVSTLTVLLQDSIGGFYVRGNDGESWIDVHPIDGSLLINIGDALQILSNGRYKSVEHC 176
H DVS +TVL Q ++ V G + D+ D LIN G + L+N YK+ H
Sbjct: 214 HEDVSLITVLYQSNVQNLQVETAAG--YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR 271
Query: 177 VVASGSKNSISVPIFINPRPQDTICPLPEVLASGEKPIYKPVLYSDYVKH 226
V ++ S+P F+N I P +G K +P+ Y DY+++
Sbjct: 272 VKWVNAERQ-SLPFFVNLGYDSVIDPFDPREPNG-KSDREPLSYGDYLQN 319
>pdb|3IEH|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_001051774.1) From Shewanella Baltica Os155 At 2.45 A
Resolution
Length = 276
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Query: 127 LQDSIGGFYVRGNDGESWIDVHPIDGSLLINIGDALQILSNGRYKSVEHCVVASGSK 183
L+D++GG++ DGE ID P+ L+ N D S E C+V SG++
Sbjct: 196 LRDTLGGYFPIAVDGE--IDACPVKDGLIFNHFDT----------SFEACLVRSGAR 240
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 142 ESWIDVHPIDGSLLINIGDALQILSNGRYKSVEHCVVASGSKNSISVPIFINP 194
E D+ I G+L++NIG LS +SVE ++A S N VP+ ++P
Sbjct: 50 EEVADMAKIAGALVLNIGT----LSK---ESVEAMIIAGKSANEHGVPVILDP 95
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 142 ESWIDVHPIDGSLLINIGDALQILSNGRYKSVEHCVVASGSKNSISVPIFINP 194
E D+ I G+L++NIG LS +SVE ++A S N VP+ ++P
Sbjct: 62 EEVADMAKIAGALVLNIGT----LSK---ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 142 ESWIDVHPIDGSLLINIGDALQILSNGRYKSVEHCVVASGSKNSISVPIFINP 194
E D+ I G+L++NIG LS +SVE ++A S N VP+ ++P
Sbjct: 62 EEVADMAKIAGALVLNIGT----LSK---ESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 7 INQGNGAKGLSEMRLKALPKQY----IHPLEERIDEAKVLPQASIAVNDMSFGLSAYEKK 62
IN+ GA G+ K + QY + L K+ Q + D + G+SA +
Sbjct: 275 INEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRS 334
Query: 63 RYSKEPSPSNNVRFVTSFNTQVEKALEW 90
EP SN +R + E A+ W
Sbjct: 335 VVDDEPVKSNGLR-ADPMCSACEMAVVW 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,852,930
Number of Sequences: 62578
Number of extensions: 333030
Number of successful extensions: 684
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 19
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)