BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046404
         (405 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
 pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
          Length = 242

 Score = 32.0 bits (71), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
           ++H R    +S +L V TE S  V +V KG             P   L+     +  V  
Sbjct: 9   VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFTPLLLRFGGRGEVKT 68

Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
           L+     SL + ++G+ + SG+YIN
Sbjct: 69  LRSAEAVSLALPLSGITLYSGLYIN 93


>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
           Determined In Space Group I222
 pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
           Determined In Space Group I222
          Length = 398

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 146 YLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKK 205
           + V  A V++       A++D  +P +V  E  ++ V +L      VP V      W+ +
Sbjct: 107 WGVQIAAVNRPLVDGTXALVDDYRPDLVVYEQGAT-VGLLAADRAGVPAVQRNQSAWRTR 165

Query: 206 --HNTFGILYSWF-------LAKVASHLEIFPGSEFRVA-----FEEAMKYGGKVILGDR 251
             H +     +         L +  + +E FP S    A     F   + YGG  +LGDR
Sbjct: 166 GXHRSIASFLTDLXDKHQVSLPEPVATIESFPPSLLLEAEPEGWFXRWVPYGGGAVLGDR 225


>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Cysteine
           Sulfamoyl Adenylate
 pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus
 pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Proline
           Sulfamoyl Adenylate
 pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
           Methanothermobacter Thermautotrophicus Bound To Alanine
           Sulfamoyl Adenylate
          Length = 501

 Score = 28.1 bits (61), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 195 VGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILG 249
           V   V+++K+  N+ GI Y   L       + FPGSE+ VAF+  M  G  + +G
Sbjct: 203 VERAVEIYKEFFNSLGIPY---LITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIG 254


>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
           A Mechanism For Ca-Regulation
 pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
           A Mechanism For Ca-Regulation
          Length = 698

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 195 VGEMVDMWKKKHNTFGILYSWFLAKVA----------SHLEIFPGSEFRVAFEEAMKYGG 244
           VGE+  M   K N FG+   W++AKV           S+  IFP   +R   ++ + Y G
Sbjct: 80  VGEIA-MITLKENGFGLKSDWYIAKVIIEKIDEATGFSNKYIFPC--YRWVIKQLVVYEG 136

Query: 245 KVIL 248
           K IL
Sbjct: 137 KAIL 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,370,946
Number of Sequences: 62578
Number of extensions: 450649
Number of successful extensions: 895
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 5
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)