BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046404
(405 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58DF3|TRABD_BOVIN TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1
Length = 377
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 41/330 (12%)
Query: 102 SDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREV 161
SD D N + + + ++ P LP +V L AE G+ VY+VGTAH S +S R+V
Sbjct: 38 SDVDAFNLLLEMKLKRRRERPN-LPHTVTELV----AEDGS-RVYVVGTAHFSDDSKRDV 91
Query: 162 EAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWK-----KKHNTFGILYSWF 216
I ++P VV +ELC RVSML + + + + K +++ L
Sbjct: 92 VKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEISLEKLQQAIRQNGVASGLMQML 151
Query: 217 LAKVASH----LEIFPGSEFRVAFEEAMKYG-GKVILGDRPVQITLRRTWEKMPLWHKIK 271
L KV++H L + PG EFR AF+EA + K LGDRP+ +T +R + LW K+K
Sbjct: 152 LLKVSAHITEQLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVK 211
Query: 272 LLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSST 331
L + F + + S +D+ R ++ D+L ++ EM FP L T+V ERD Y++
Sbjct: 212 LAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMVGEFPDLHRTIVSERDVYLTYM 266
Query: 332 LLKVATE---------------HSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPA 376
L + A S VV VVG GH+ GI+ W + + ++MT+P P
Sbjct: 267 LRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWTTDLNIQEIMTVPPP--- 323
Query: 377 VSALKVLSSLGVAVAGVAIIS-GIYINCKK 405
SA +S L V A + ++ G+Y ++
Sbjct: 324 -SASGRVSRLAVKAAALGLLGYGLYWTGRR 352
>sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1
Length = 376
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 36/297 (12%)
Query: 102 SDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREV 161
SD D N + + + ++ P LPR+V L AE G+ VY+VGTAH S +S R+V
Sbjct: 37 SDVDAFNLLLEMKLKRRRERPN-LPRTVTQLV----AEDGS-RVYVVGTAHFSDDSKRDV 90
Query: 162 EAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWK-----KKHNTFGILYSWF 216
I ++P VV +ELC RVSML + + V + K +++ L
Sbjct: 91 VKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVRQNGLMSGLMQML 150
Query: 217 LAKVASH----LEIFPGSEFRVAFEEAMKYG-GKVILGDRPVQITLRRTWEKMPLWHKIK 271
L KV++H L + PG EFR AF+EA K K LGDRP+ +T +R + W K+K
Sbjct: 151 LLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVK 210
Query: 272 LLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSST 331
L + F + + S +D+ R ++ D+L ++ EM FP L T+V ERD Y++
Sbjct: 211 LAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYM 265
Query: 332 LLKVATE---------------HSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSP 373
L + A S VV VVG GH+ GI+ W + + ++MT+P P
Sbjct: 266 LRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPP 322
>sp|Q58760|Y1365_METJA Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1365 PE=4 SV=1
Length = 397
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 10/228 (4%)
Query: 143 CDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRV-SMLTPQNLKVPTVGEMVDM 201
CD+YL+GTAHVSK+S EVE II + P+ + +EL R S++T + KV + +
Sbjct: 17 CDIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLITNEEKKVDLKKVLKEG 76
Query: 202 WKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTW 261
K + IL + K+ I PGSE + A E A KYG + L DR + ITL R
Sbjct: 77 NFLKFFIYLILANS-QKKIGESFGIKPGSEMKKAIEIASKYGLPIYLIDRDIDITLSRLM 135
Query: 262 EKMPLWHKIKLLYSFL--FQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMET 319
++M K+K+ + L + + LN M+K + L ++E+S PT+ E
Sbjct: 136 DRMTFKEKMKIFWELLNSDEEDLELDDDLLNDMVKNPEKFIKL---LKEIS---PTIYEV 189
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDL 367
LV ERD++M+ L +++ +S+VAVVG GH++GI Y K+ +D+
Sbjct: 190 LVDERDRFMAKRLFELSKNKNSLVAVVGAGHVEGIVRYLKKLENGNDI 237
>sp|Q9H4I3|TRABD_HUMAN TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1
Length = 376
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 150/301 (49%), Gaps = 44/301 (14%)
Query: 102 SDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREV 161
SD D N + + + ++ P LPR+V L AE G+ VY+VGTAH S +S R+V
Sbjct: 38 SDVDAFNLLLEMKLKRRRQRPN-LPRTVTQLV----AEDGS-RVYVVGTAHFSDDSKRDV 91
Query: 162 EAIIDFLKPQVVFLELCSSRVSMLT---------PQNLKVPTVGEMVDMWKKKHNTFGIL 212
I ++P VV +ELC RVSML Q L + + + V +++ L
Sbjct: 92 VKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAV----RQNGLMSGL 147
Query: 213 YSWFLAKVASH----LEIFPGSEFRVAFEEAMKYG-GKVILGDRPVQITLRRTWEKMPLW 267
L KV++H L + PG EFR AF+EA K K LGDRP+ +T +R + W
Sbjct: 148 MQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFW 207
Query: 268 HKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQY 327
K++L + F + + S +D+ R ++ D+L ++ EM FP L T+V ERD Y
Sbjct: 208 QKVRLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVY 262
Query: 328 MSSTLLKVATE---------------HSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPS 372
++ L + A S VV VVG GH+ GI+ W + + ++MT+P
Sbjct: 263 LTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPP 322
Query: 373 P 373
P
Sbjct: 323 P 323
>sp|B5RD47|RECO_SALG2 DNA repair protein RecO OS=Salmonella gallinarum (strain 287/91 /
NCTC 13346) GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|B5QTU6|RECO_SALEP DNA repair protein RecO OS=Salmonella enteritidis PT4 (strain
P125109) GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|P0A285|RECO_SALTY DNA repair protein RecO OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|P0A286|RECO_SALTI DNA repair protein RecO OS=Salmonella typhi GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|B5BAT2|RECO_SALPK DNA repair protein RecO OS=Salmonella paratyphi A (strain
AKU_12601) GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|A9N1T3|RECO_SALPB DNA repair protein RecO OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|Q5PIG3|RECO_SALPA DNA repair protein RecO OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|B4T1F6|RECO_SALNS DNA repair protein RecO OS=Salmonella newport (strain SL254)
GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|B4TE13|RECO_SALHS DNA repair protein RecO OS=Salmonella heidelberg (strain SL476)
GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|Q57LD2|RECO_SALCH DNA repair protein RecO OS=Salmonella choleraesuis (strain SC-B67)
GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|B5F1F9|RECO_SALA4 DNA repair protein RecO OS=Salmonella agona (strain SL483) GN=recO
PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|B4TS12|RECO_SALSV DNA repair protein RecO OS=Salmonella schwarzengrund (strain
CVM19633) GN=recO PE=3 SV=1
Length = 242
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|B5FRC3|RECO_SALDC DNA repair protein RecO OS=Salmonella dublin (strain CT_02021853)
GN=recO PE=3 SV=1
Length = 242
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ S + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGVLQPFTPLLLRYSGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+YIN
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYIN 93
>sp|O94649|ATG2_SCHPO Autophagy-related protein 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=atg2 PE=1 SV=4
Length = 1646
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 76 SGEEFVHVDPLSESIVSLGDEVRDESSDRDETNGAVPVPEE 116
S EEFV +D S SI+ + DE++DESS RD + + E+
Sbjct: 1091 SSEEFV-IDDGSSSIIDISDELQDESSSRDSLKKGIELIED 1130
>sp|Q5P6D5|MACB_AROAE Macrolide export ATP-binding/permease protein MacB OS=Aromatoleum
aromaticum (strain EbN1) GN=macB PE=3 SV=2
Length = 641
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 188 QNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHL--EIFPGSEFRVAFEEAMKYGGK 245
+N++VP V + ++ G+L S L + H ++ G + RV+ A+ GG+
Sbjct: 104 ENVEVPAVYSGMPPAERHARATGLLASLGLGERIEHRPNQLSGGQQQRVSIARALMNGGR 163
Query: 246 VILGDRPV-QITLRRTWEKMPLWHKI 270
VIL D P + + E M L +K+
Sbjct: 164 VILADEPTGALDTKSGAEVMQLLNKL 189
>sp|C4K3Z5|RECO_HAMD5 DNA repair protein RecO OS=Hamiltonella defensa subsp.
Acyrthosiphon pisum (strain 5AT) GN=recO PE=3 SV=1
Length = 234
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQ---GIKNYWKQPVPVHDLMTIPSPKPA 376
++H R +S +L + TE+ ++++ KG L+ +K Y + P L+ S K A
Sbjct: 10 ILHRRSYSETSLILDLLTENEGRISLIAKGALRPRSALKGYLQPFTP---LLLRWSGKSA 66
Query: 377 VSALKVLSSLGVAV--AGVAIISGIYIN 402
+ L + +AV G+ + SG+Y+N
Sbjct: 67 IKTLCGAEPISIAVPLTGIFLYSGLYVN 94
>sp|B6K1V7|CCM1_SCHJY Mitochondrial group I intron splicing factor dmr1
OS=Schizosaccharomyces japonicus (strain yFS275 /
FY16936) GN=dmr1 PE=3 SV=1
Length = 677
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 159 REVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLA 218
R+VE ++ ++ E+ ++ LTP + + + + + + H+ F ++ A
Sbjct: 332 RKVEKALN------LYQEMQERPINPLTPSSRTIDAILRALARYPRYHSKFWSIFEELRA 385
Query: 219 KVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWE---KMPLWHKIKLLYS 275
+ + PG++ VAF + YGG+V ++ + R W + P I+LL+
Sbjct: 386 E-----QWKPGAQTFVAFAQLFSYGGQV----NSLKRWISRIWSMSGETPDAKTIELLFQ 436
Query: 276 FLFQAF 281
+LF+A+
Sbjct: 437 YLFRAY 442
>sp|A4WDD6|RECO_ENT38 DNA repair protein RecO OS=Enterobacter sp. (strain 638) GN=recO
PE=3 SV=2
Length = 235
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+Y+N
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYVN 93
>sp|B5XNH2|RECO_KLEP3 DNA repair protein RecO OS=Klebsiella pneumoniae (strain 342)
GN=recO PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+Y+N
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYVN 93
>sp|A6TCH9|RECO_KLEP7 DNA repair protein RecO OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=recO PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R +S +L V TE S V +V KG N P L+ + V
Sbjct: 9 VLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFGGRGEVKT 68
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SL + ++G+ + SG+Y+N
Sbjct: 69 LRSAEAVSLALPLSGITLYSGLYVN 93
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 65 NFPKMDPNPPESGEEFVHVDPLSESIVSLGDEVRDESSDRDETNGAVPVPEETKKVLP 122
N P DPN + E HVD L DE +E + D N ++P +++ ++LP
Sbjct: 304 NVPPQDPNDHRNFENLRHVDELDH------DEATEEHENNDSDN-SLPSGDDSSRILP 354
>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1
SV=4
Length = 2481
Score = 33.1 bits (74), Expect = 4.3, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 67 PKMDPNPPESGEEFVHVDPLSESIVSLGDEVRDESSDRDETNGAVPVPE---ETKKVLPE 123
P MD NP S F H + ES+ V+D++SD + + P+ E VL
Sbjct: 1560 PSMDGNPASSKSSFGHPYTIPESL-----RVQDDASDGESISDCPPLQELLLTAADVLDL 1614
Query: 124 ELPRSVVIL 132
+LP +V+L
Sbjct: 1615 QLPVKLVVL 1623
>sp|O85078|CBAD1_ARTSP 4-chlorobenzoyl coenzyme A dehalogenase-1 OS=Arthrobacter sp.
GN=fcbB1 PE=1 SV=2
Length = 276
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 289 LNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEH--SSVVAVV 346
+NR+ E D + + ++++ A PT ++ LV R Q SS L+ TEH +V+A V
Sbjct: 185 VNRVFSEADFQSRVGEIARQLAAA-PTHLQGLVKNRIQEGSSETLESCTEHEVQNVIASV 243
Query: 347 GKGHL 351
G H
Sbjct: 244 GHPHF 248
>sp|Q9LCU3|CBAD2_ARTSP 4-chlorobenzoyl coenzyme A dehalogenase-2 OS=Arthrobacter sp.
GN=fcbB2 PE=1 SV=1
Length = 276
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 289 LNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEH--SSVVAVV 346
+NR+ E D + + ++++ A PT ++ LV R Q SS L+ TEH +V+A V
Sbjct: 185 VNRVFSEADFQSRVGEIARQLAAA-PTHLQGLVKNRIQEGSSETLESCTEHEVQNVIASV 243
Query: 347 GKGHL 351
G H
Sbjct: 244 GHPHF 248
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 259 RTWEKMPLWHKIKLLYSFLFQAF--FLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTL 316
RT+ + L ++ LY+ L Q + LP A DL R LK++DD D+L V E SKA+ L
Sbjct: 137 RTFLRQTLTARLVRLYNDL-QRYTQALPLAADLIRELKKVDDKDVLVEVELEESKAYYNL 195
>sp|Q9UT32|RL1DB_SCHPO Putative ribosome biogenesis protein C8F11.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC8F11.04 PE=3 SV=1
Length = 373
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 111 VPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKES---CREVEAIIDF 167
VPVP + K E+L R VV + C +++ HVS S VE+I+ F
Sbjct: 164 VPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQF 223
Query: 168 LKPQVV 173
+ +V
Sbjct: 224 VSKHIV 229
>sp|Q6C9G0|HIR3_YARLI Histone transcription regulator 3 homolog OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=HIR3 PE=3 SV=2
Length = 1921
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 24 TTVKSQIPLRRG---PTSLPLSLTKQFSPLLSTRITSFATANDPNFPKMDPNPPESGEEF 80
TT SQ P +R P L KQ P ITSF + D FP +D N ++ E+F
Sbjct: 414 TTSSSQPPSKRTRGRGADEPAELEKQVDPGFFNNITSFVGSLDLKFPFVDLNQLDNEEQF 473
Query: 81 VH-VDPLSESIVSLGDEVRDESSDRDETNGAVPVPE 115
+ + G E+ + S E+N +VPV +
Sbjct: 474 YQDFKAVISNWGEQGSELFLKLSSAPESNLSVPVTQ 509
>sp|Q5GIQ5|MATK_SYZCU Maturase K OS=Syzygium cumini GN=matK PE=3 SV=1
Length = 518
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 210 GILYS--WFLAKVASHLEIFPGSEFRVA-------FEEAMKYGGKVILGDRPVQITLRRT 260
GI + +F K+ ++F ++F+ F ++Y GK ILG + + + +
Sbjct: 238 GIFFERIYFYVKIEHFAKVFFDNDFQCILWFFKDPFMHYVRYQGKSILGSKDTPLLMNK- 296
Query: 261 WEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLK 294
W+ + + L+ + F A+F P D+N++ K
Sbjct: 297 WK-----YYLVTLWQYHFYAWFQPGRIDINQLCK 325
>sp|Q7MHP0|RECO_VIBVY DNA repair protein RecO OS=Vibrio vulnificus (strain YJ016) GN=recO
PE=3 SV=1
Length = 243
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSA 379
++H R SS +L V +E + ++ KG N P L+ S K A+
Sbjct: 12 VLHRRPYSESSLILDVFSEEFGRITLMSKGARSKRSNLKGALQPFTPLLLKWSGKGAMKT 71
Query: 380 LKVLS--SLGVAVAGVAIISGIYIN 402
L+ SLG+ + G+ + S +Y+N
Sbjct: 72 LRQAEPISLGLPLTGINLYSALYVN 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,517,907
Number of Sequences: 539616
Number of extensions: 6426903
Number of successful extensions: 18440
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 18401
Number of HSP's gapped (non-prelim): 47
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)