Query 046404
Match_columns 405
No_of_seqs 174 out of 575
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 11:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00261 traB pheromone shutd 100.0 4.6E-56 9.9E-61 449.5 25.3 252 141-402 2-262 (380)
2 COG1916 Uncharacterized homolo 100.0 9.1E-52 2E-56 408.6 26.3 252 142-403 11-272 (388)
3 KOG2860 Uncharacterized conser 100.0 1.5E-31 3.2E-36 260.7 4.1 252 143-404 82-353 (359)
4 PF01963 TraB: TraB family; I 99.9 4.5E-24 9.7E-29 203.8 19.1 208 140-359 7-247 (259)
5 COG3735 Uncharacterized protei 99.6 1.4E-14 3.1E-19 141.9 16.6 212 140-358 39-285 (299)
6 PF04187 DUF399: Protein of un 96.1 0.13 2.9E-06 49.0 13.2 176 142-352 13-202 (213)
7 KOG2860 Uncharacterized conser 95.7 0.00074 1.6E-08 67.6 -3.9 108 220-365 131-239 (359)
8 KOG2629 Peroxisomal membrane a 45.9 17 0.00037 36.5 2.8 35 368-405 72-106 (300)
9 PRK01844 hypothetical protein; 40.6 26 0.00057 28.2 2.6 17 387-404 11-27 (72)
10 PF02601 Exonuc_VII_L: Exonucl 40.4 70 0.0015 31.9 6.3 59 116-175 5-81 (319)
11 PRK14762 membrane protein; Pro 39.0 30 0.00065 22.4 2.1 21 380-400 1-23 (27)
12 PF05961 Chordopox_A13L: Chord 37.8 36 0.00078 27.1 2.9 18 386-404 10-27 (68)
13 PHA03049 IMV membrane protein; 36.8 38 0.00083 26.8 2.9 17 387-404 11-27 (68)
14 TIGR00228 ruvC crossover junct 34.5 81 0.0017 29.0 5.1 35 143-177 23-65 (156)
15 PRK00523 hypothetical protein; 33.0 40 0.00087 27.2 2.5 11 394-404 18-28 (72)
16 PRK11382 frlB fructoselysine-6 29.1 4.4E+02 0.0095 26.6 10.0 33 230-262 106-138 (340)
17 PF01212 Beta_elim_lyase: Beta 27.3 2.1E+02 0.0046 28.4 7.2 77 141-264 91-172 (290)
18 PF13209 DUF4017: Protein of u 26.8 49 0.0011 25.3 1.9 25 380-405 32-59 (60)
19 cd00529 RuvC_resolvase Hollida 26.4 1.7E+02 0.0036 26.3 5.7 34 144-177 25-67 (154)
20 COG3763 Uncharacterized protei 26.2 63 0.0014 25.9 2.5 13 392-404 15-27 (71)
21 PF03808 Glyco_tran_WecB: Glyc 26.2 1.2E+02 0.0025 27.7 4.8 37 145-181 75-113 (172)
22 PRK00286 xseA exodeoxyribonucl 26.1 1.5E+02 0.0033 31.0 6.2 59 116-175 126-198 (438)
23 COG5323 Uncharacterized conser 25.7 2.1E+02 0.0046 29.1 6.7 35 116-150 239-273 (410)
24 PF03740 PdxJ: Pyridoxal phosp 24.7 98 0.0021 30.4 4.1 34 158-192 73-106 (239)
25 PF02075 RuvC: Crossover junct 24.5 1.4E+02 0.0031 26.6 4.9 35 144-178 24-67 (149)
26 PRK00039 ruvC Holliday junctio 24.4 70 0.0015 29.3 2.9 21 158-178 50-70 (164)
27 PRK05590 hypothetical protein; 23.0 61 0.0013 30.2 2.2 65 303-369 21-86 (166)
28 COG0370 FeoB Fe2+ transport sy 22.8 9.5E+02 0.02 27.2 11.6 55 129-183 36-95 (653)
29 cd00003 PNPsynthase Pyridoxine 22.7 1.2E+02 0.0025 29.8 4.2 25 158-183 72-96 (234)
30 TIGR00559 pdxJ pyridoxine 5'-p 22.0 1.3E+02 0.0029 29.5 4.4 33 158-191 72-104 (237)
31 PRK10132 hypothetical protein; 21.4 78 0.0017 27.3 2.4 16 390-405 93-108 (108)
32 PF14283 DUF4366: Domain of un 21.0 46 0.001 32.1 1.1 17 378-394 159-175 (218)
33 PRK05265 pyridoxine 5'-phospha 20.8 1.4E+02 0.0029 29.5 4.2 26 158-184 75-100 (239)
No 1
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=100.00 E-value=4.6e-56 Score=449.47 Aligned_cols=252 Identities=30% Similarity=0.470 Sum_probs=218.9
Q ss_pred CCceEEEEecccCChhhHHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCCCchhHHHHHHHhccch---HHHHHHHHH
Q 046404 141 GTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNT---FGILYSWFL 217 (405)
Q Consensus 141 ~~~~IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~p~~~~l~~~~k~~~~~---~~l~ls~~l 217 (405)
++++||||||+|+|++|+++|+++|+++|||+||||||++|++.+..+.++.+ ++.+.+++++.. +++++++||
T Consensus 2 ~~~~i~lvGTAHvS~~S~~eV~~~I~~~~PD~VaVELd~~R~~~l~~~~~~~~---di~~vlk~g~~~~~l~~~~La~~q 78 (380)
T TIGR00261 2 HEKTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNL---DIDKVLKQGNAFFLIINLILANFQ 78 (380)
T ss_pred CCcEEEEEecccCCHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHhhhhhccC---CHHHHhhcCchHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999998876544433 455666765532 367789999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCCCHHHHHHHHHhcc
Q 046404 218 AKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMD 297 (405)
Q Consensus 218 ~~la~~lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p~~eeie~ll~~l~ 297 (405)
+++++++|++||+||++|+++|++.|++|+|+|||+++|++|+|++|++|+|.|++.+++..... .+++++ ++++
T Consensus 79 ~~l~~~~gi~PG~Em~~Ai~~A~e~g~~v~LiDRdI~iTl~R~w~~~~~~eK~kl~~~l~~~~~~-~~e~~i----e~l~ 153 (380)
T TIGR00261 79 KKLGEEQGIKPGSEMKTAIEKAKKHGIPLILIDRDIETTLKRAWISITFFEKAKIISSLFSSTDA-KIEDEI----EKLL 153 (380)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCcEEEeCCCHhHHHHHHHHhCCHHHHHHHHHHHHhcccc-CCHHHH----HHhh
Confidence 99999999999999999999999999999999999999999999999999999999998875532 244444 4568
Q ss_pred chhhHHHHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEEcCCCchhhhhhcCCC-----CCCccccCCCC
Q 046404 298 DVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQP-----VPVHDLMTIPS 372 (405)
Q Consensus 298 ~~D~l~~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVVGagHL~GI~~~~~~p-----~~~~~L~~lP~ 372 (405)
+.|.++++++++++.+|.++++|++|||+|||++|.++..++++||+||||||++||+++|+++ +++++|+++|+
T Consensus 154 ~~d~L~~~~~e~~~~~P~l~~~LIdERD~ymA~~L~~l~~~~~~VvaVVGAGHl~GI~~~l~~~~~~~~~~~~~L~~~p~ 233 (380)
T TIGR00261 154 EQDALSKIMKELSKISPKVKKVLIDERDEFMANKLLEGEGNKNIIVAVVGAGHVSGIMRTLKKLQNKNIINLEELEKVKK 233 (380)
T ss_pred hhhHHHHHHHHHhhhCCchhhHHHHHHHHHHHHHHHHhhcCCCcEEEEECcchhhhHHHHHhCccccCCCChHHHhcCCC
Confidence 8999999999999999999999999999999999999877678999999999999999999975 46889999997
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHH-Hhhhhc
Q 046404 373 PKPAVSALKVLSSLGVAVAGVAII-SGIYIN 402 (405)
Q Consensus 373 ~~~~~~~~k~~~~~~~~~~~~~~~-~g~~~~ 402 (405)
++ .++.|+++|++++++.++++ +|||..
T Consensus 234 ~~--~~~~k~~~~~i~~~i~~~~~~~~~~~~ 262 (380)
T TIGR00261 234 KH--FSFSKVLSYLIAISIILLFVMISFYLN 262 (380)
T ss_pred CC--ccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 65 23459999999866666777 888864
No 2
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=100.00 E-value=9.1e-52 Score=408.63 Aligned_cols=252 Identities=37% Similarity=0.580 Sum_probs=216.9
Q ss_pred CceEEEEecccCChhhHHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCCCchhHHHHHHHhccchH---HHHHHHHHH
Q 046404 142 TCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTF---GILYSWFLA 218 (405)
Q Consensus 142 ~~~IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~p~~~~l~~~~k~~~~~~---~l~ls~~l~ 218 (405)
.+++||+||+|+|++|.++|++.|++.+||+|+||||..|+.++..+... ..++.+.+|+++..+ +++++++|+
T Consensus 11 ~~~v~iiGTAHVS~~SveeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~---~ldl~~vlk~Gk~~~~l~~~lLa~~Qr 87 (388)
T COG1916 11 EKEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSRE---ELDLAQVLKEGKAFFLLAGLLLAYFQR 87 (388)
T ss_pred cceEEEEeeeecCHhHHHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcc---cCCHHHHHHcCchHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999988754311 234567777776442 678899999
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCC--CHHHHHHHHHhc
Q 046404 219 KVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLP--SAEDLNRMLKEM 296 (405)
Q Consensus 219 ~la~~lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p--~~eeie~ll~~l 296 (405)
++++++|++||+||++|++.|.+.|+||+|+||||++|++|+|.+|++|+|+|++++++....+ + ++.+ ++++
T Consensus 88 klg~~~Gv~PGsEmk~AIe~A~e~ga~V~lIDRdI~vTl~R~~~~~~~~EKlK~~~~L~~~~~~-~g~~e~e----i~~l 162 (388)
T COG1916 88 KLGKELGVKPGSEMKAAIEAARELGAPVALIDRDIGVTLRRAWAKMPFWEKLKLISSLISGLLF-PGQSEIE----IDEL 162 (388)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCCEEEecccHHHHHHHHHHhCCHHHHHHHHHHHHHhccc-CCCchHH----HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999875333 2 2344 4457
Q ss_pred cchhhHHHHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEEcCCCchhhhhhcCC----CCCCccccCCCC
Q 046404 297 DDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQ----PVPVHDLMTIPS 372 (405)
Q Consensus 297 ~~~D~l~~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVVGagHL~GI~~~~~~----p~~~~~L~~lP~ 372 (405)
+..|++..+++|+++.+|.+|++||||||+|||++|.+......+|||||||||..||++++++ |..+.||+++|+
T Consensus 163 ~~~D~~~al~~efr~~~P~~~~vLIDERd~ymA~nll~~~~~~~~vvAVVGAGH~~GI~~~L~~~~~~p~~l~el~~~~~ 242 (388)
T COG1916 163 KQEDVLSALMQEFRRFSPTVYKVLIDERDRYMARNLLEIVSILNDVVAVVGAGHVRGIERYLKNSDSAPPHLEELTELEK 242 (388)
T ss_pred hhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcccCcEEEEEccccHHHHHHHHhccccCCccHHHHhcccc
Confidence 8899999999999999999999999999999999999997766779999999999999999976 444678899998
Q ss_pred CCCCcchhHHH-HHHHHHHHHHHHHHhhhhcc
Q 046404 373 PKPAVSALKVL-SSLGVAVAGVAIISGIYINC 403 (405)
Q Consensus 373 ~~~~~~~~k~~-~~~~~~~~~~~~~~g~~~~~ 403 (405)
.+. +..|++ +|++.++++.+++++|++..
T Consensus 243 ~~~--s~~k~~~g~~~~~l~~~~iv~~~~~~~ 272 (388)
T COG1916 243 KGS--SLGKVLLGILLAALLIFLIVICFGLGG 272 (388)
T ss_pred ccc--chhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 764 467777 77777777878888888653
No 3
>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-31 Score=260.73 Aligned_cols=252 Identities=32% Similarity=0.480 Sum_probs=190.5
Q ss_pred ceEEEEecccCChhhHHHHHHHHHhhCCCEEEEeecchhhhccCCCCCC------CCchhHHHHHHHhcc---chHHHHH
Q 046404 143 CDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLK------VPTVGEMVDMWKKKH---NTFGILY 213 (405)
Q Consensus 143 ~~IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~------~p~~~~l~~~~k~~~---~~~~l~l 213 (405)
+.||||||+|+|++|+++|..+|+.++||.|+||||++|......++-+ .-+-.++...+++.+ +.+.+.+
T Consensus 82 s~i~lVgTah~S~Es~~~v~~virtv~pd~V~vElCrsr~sIis~~ep~l~se~evl~g~~f~~~~~~~~~~gG~~~L~l 161 (359)
T KOG2860|consen 82 STIYLVGTAHFSKESQEDVSNVIRAVQPDFVMVELCRSRISIISADEPQLLSEAEVLNGAKFRGIFEEAGKIGGIVFLLL 161 (359)
T ss_pred ceeEEEEeeecCccccccHHHHhhccCcceeehhhccchhhcccccChhhhccCcccCCcceeeeeccccccCceEehhh
Confidence 5799999999999999999999999999999999999998765432211 001111222222211 2233445
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHH-hCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCCCHHHHHHH
Q 046404 214 SWFLAKVASHLEIFPGSEFRVAFEEAMK-YGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRM 292 (405)
Q Consensus 214 s~~l~~la~~lGv~PG~Ef~~Aie~A~e-~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p~~eeie~l 292 (405)
..++++....+++.||+||+.|.++|-+ .|+-++||||++++|+.|+|..+++|++.++.+.+-+..-.....++.+
T Consensus 162 rsv~a~~~~dLdmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~eLs~~~a~~lv~~vt~s~~~s~~t~eve-- 239 (359)
T KOG2860|consen 162 RSVSAKDLGDLDMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALSELSSWQAVVLVGHVTFSKKNSIQTEEVE-- 239 (359)
T ss_pred hhhhhhhccccccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHHhcchhheeeEEEEEEEeeccccchhhhh--
Confidence 5566777888999999999999877755 5999999999999999999999999999877655432110111233333
Q ss_pred HHhccchhhHHHHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhc---------CCcEEEEEcCCCchhhhhhcCCCCC
Q 046404 293 LKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATE---------HSSVVAVVGKGHLQGIKNYWKQPVP 363 (405)
Q Consensus 293 l~~l~~~D~l~~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~---------~~~VVaVVGagHL~GI~~~~~~p~~ 363 (405)
..++.|.+++++.+|...+|.+..+|+.|||.||++.|+.+... +-.+|+|||.||.+||-+.|+. ++
T Consensus 240 --~c~q~~Lveql~~~~a~~vp~~~lvlv~eRd~yl~~slelif~v~~~~gq~~~~~mvvvVvgi~~~sG~~~~~~~-~~ 316 (359)
T KOG2860|consen 240 --NCKQTDLVEQLTIEMANFVPALSLVLVQERDLYLCHSLELIFTVWLRGGQQILPYMVVVVVGIGHVSGIYLAWNT-ID 316 (359)
T ss_pred --hhhHHhHHHHHHHHHHhhHHHHHHHHHHHHHhhhccchhheeeecccCCccccceEEEEEEEEEecchhhhhhcc-cC
Confidence 34667888999999999999999999999999999999876432 2478999999999999999998 77
Q ss_pred CccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHHhhhhccc
Q 046404 364 VHDLMTIPSPKPAVSALKVLSSLGV-AVAGVAIISGIYINCK 404 (405)
Q Consensus 364 ~~~L~~lP~~~~~~~~~k~~~~~~~-~~~~~~~~~g~~~~~~ 404 (405)
.+.++.+|+++ ...|++++..= .++| + .++.|++.|
T Consensus 317 ~d~~~~~~~~~---~~qkv~k~~vr~~~ig-l-~~l~~r~~~ 353 (359)
T KOG2860|consen 317 FDPLMNIPPPS---LGQKVFKTGVRIVVIG-L-GYLAYRGGR 353 (359)
T ss_pred CCCcCCCCChH---HHHHHHhhchheeeee-h-HHHHHhhch
Confidence 76799999764 56888887753 5566 3 377777654
No 4
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=99.92 E-value=4.5e-24 Score=203.77 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=147.4
Q ss_pred CCCceEEEEecccCChhhHHHHHHHHHh--hCCCEEEEee------------------cchhhhccCCCCCCCCchhHHH
Q 046404 140 GGTCDVYLVGTAHVSKESCREVEAIIDF--LKPQVVFLEL------------------CSSRVSMLTPQNLKVPTVGEMV 199 (405)
Q Consensus 140 ~~~~~IYLvGTaHvS~~Sa~~V~~~I~~--vkPD~VvVEL------------------c~sR~~~L~~~~~~~p~~~~l~ 199 (405)
++++++||+||+|+++.+...+...|++ .+||+|++|+ |..++..+... ..+..+.
T Consensus 7 ~~g~~~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~l~ 82 (259)
T PF01963_consen 7 KNGKTVYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVELDMSDPEAQAQMQQAMMLPDGKTLKDLLSP----EEYARLE 82 (259)
T ss_pred cCCeEEEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEecccccHHHHHHHHhhccCCCcccHHHhcCH----HHHHHHH
Confidence 4578999999999999999999999999 8999999999 22222111110 0111111
Q ss_pred HHHHhcc---------chHHHHHHHHHHHHhhhcCCCChHHHHHH-HHHHHHhCCeEE-EcCchhHHHHHHhhhcCChHH
Q 046404 200 DMWKKKH---------NTFGILYSWFLAKVASHLEIFPGSEFRVA-FEEAMKYGGKVI-LGDRPVQITLRRTWEKMPLWH 268 (405)
Q Consensus 200 ~~~k~~~---------~~~~l~ls~~l~~la~~lGv~PG~Ef~~A-ie~A~e~Ga~Vv-LgDRdiqiTlrRl~~~Ls~~e 268 (405)
..+++.+ .++.+...+.+..+.+ |+.+...+... ...|++.|+++. |+|++.|+++ ++++|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~--~~~~~~gvd~~l~~~A~~~~~~v~~Le~~~~q~~~---~~~~~~~~ 157 (259)
T PF01963_consen 83 ELLAEYGLPLEMLRKLKPWAAAFLLSLSAFQK--GYSPEYGVDPYLEQRAAEEGKPVVGLETREEQITL---LRSLPLDE 157 (259)
T ss_pred HHHHhcCCCHHHHHcCCHHHHHHHHHHHHHhc--cccccccccHHHHHHHHHhCCCcccccCHHHHHHH---HhcCCHHH
Confidence 2222211 1111211221222222 33333333332 256778888888 9999999986 45669999
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHhccchhhHHHHHHHHHH--hChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEE
Q 046404 269 KIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSK--AFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVV 346 (405)
Q Consensus 269 k~kll~~ll~~~~~~p~~eeie~ll~~l~~~D~l~~l~~em~~--~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVV 346 (405)
+.+++..++.... ...+.++++++.|.++|. ..+.+.+.+ .+|.+++.|+++||++|+.+|.+++++++++|+||
T Consensus 158 q~~~L~~~l~~~~--~~~~~~~~~~~~~~~gd~-~~l~~~~~~~~~~p~~~~~ll~~RN~~~~~~i~~~l~~~~~~fvvV 234 (259)
T PF01963_consen 158 QVKMLRETLDDIE--DGEKMLEQLIEAWKNGDL-DALMELMKEDESFPELYEVLLDERNRRWAEKIEELLKEGGTVFVVV 234 (259)
T ss_pred HHHHHHHHHhccc--cchHHHHHHHHHHHccCH-HHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999886532 245667888999999986 777777777 89999999999999999999999988778999999
Q ss_pred cCCCchhhhhhcC
Q 046404 347 GKGHLQGIKNYWK 359 (405)
Q Consensus 347 GagHL~GI~~~~~ 359 (405)
||||+.|+.++++
T Consensus 235 Ga~HL~G~~gvl~ 247 (259)
T PF01963_consen 235 GAGHLPGEDGVLD 247 (259)
T ss_pred cchhccchhhHHH
Confidence 9999999888764
No 5
>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.61 E-value=1.4e-14 Score=141.86 Aligned_cols=212 Identities=19% Similarity=0.208 Sum_probs=140.9
Q ss_pred CCCceEEEEecccCCh----hhHHHHHHHHHhhCCCEEEEeecchh---hhccCCC----------CCC--C-CchhHHH
Q 046404 140 GGTCDVYLVGTAHVSK----ESCREVEAIIDFLKPQVVFLELCSSR---VSMLTPQ----------NLK--V-PTVGEMV 199 (405)
Q Consensus 140 ~~~~~IYLvGTaHvS~----~Sa~~V~~~I~~vkPD~VvVELc~sR---~~~L~~~----------~~~--~-p~~~~l~ 199 (405)
.|++++||+||.|+.. .....+.++++.- +.++||+|..- ...++.. +.. + +.....+
T Consensus 39 ~G~s~~yL~GTiHvg~~~~~~lp~~~~~a~~~A--~tLivE~d~~~~~~~a~i~~~~~l~~~~~~~~l~~~Ls~e~~~~l 116 (299)
T COG3735 39 PGNSPLYLLGTIHVGSPRVLPLPDKLLKALDQA--DTLIVEADDIVKKNTAVILKQPMLTGFTDGENLEDRLSPEQLARL 116 (299)
T ss_pred CCCCceEEeeeeecCCCccccCCHHHHHHHhhc--CceEEEeccccccchHHHhcccccccCCCCcchhhhcCHHHHHHH
Confidence 4567899999999988 3467778888775 99999999422 2222211 000 0 1111122
Q ss_pred HHH-Hhcc-c--hH-----HHHHHHHHHHHhhhcCCCChHHHHHHH-HHHHHhCCeEEEcCchhHHHHHHhhhcCChHHH
Q 046404 200 DMW-KKKH-N--TF-----GILYSWFLAKVASHLEIFPGSEFRVAF-EEAMKYGGKVILGDRPVQITLRRTWEKMPLWHK 269 (405)
Q Consensus 200 ~~~-k~~~-~--~~-----~l~ls~~l~~la~~lGv~PG~Ef~~Ai-e~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek 269 (405)
+.+ ++-+ + .+ ..+.+.++.......|..++..++.-+ ++|++.|.||+ |..+.+.++ +++..+|....
T Consensus 117 e~~~~~lGi~~~~~~~~~pW~la~~L~~~~~~~~~~~~~~giD~~L~q~A~~~~k~I~-gLEt~~~Ql-~~l~~LP~d~~ 194 (299)
T COG3735 117 EMILQELGIPLQALSKMPPWQLASVLAATQCEKAGLRGEYGIDYQLLQAAKAQNKPIL-GLETAEEQL-AALASLPLDFG 194 (299)
T ss_pred HHHHHHcCCCHHHHhcCCcHHHHHHHHHHHHHHcCcCcccchhHHHHHHHHHcCCCcc-chhhHHHHH-HHHHcCChHHH
Confidence 222 2222 1 11 123333344455677877888886665 99999999999 666666666 56788997777
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHhccchh--hHHHHHHH---HHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEE
Q 046404 270 IKLLYSFLFQAFFLPSAEDLNRMLKEMDDVD--MLTLVIQE---MSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVA 344 (405)
Q Consensus 270 ~kll~~ll~~~~~~p~~eeie~ll~~l~~~D--~l~~l~~e---m~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVa 344 (405)
++++.+++.-.. ...+-++.++..|.++| ++...... +...++.+++.|+.+||..|+.+ +...-.+++.|+
T Consensus 195 i~~L~~tl~~~~--~~~d~l~tmi~~~l~gD~~~~~~~~~~~~~~~~~~~~~~~~li~~RN~~wad~-~~~~l~~G~~fv 271 (299)
T COG3735 195 IELLIDTLALGD--TNADLLETMIDLWLNGDVGMFMPNLQAILPNKTFYADLYDVLITQRNRAWADK-KTPLLQGGRYFV 271 (299)
T ss_pred HHHHHHHHHccc--cHHHHHHHHHHHHHcCCcchhhHHHhhhCccccchHHHHHHHHHHHHHHHHHh-hccccCCCCEEE
Confidence 888888775332 23455788999999988 33333333 23568889999999999999997 433346899999
Q ss_pred EEcCCCchhhhhhc
Q 046404 345 VVGKGHLQGIKNYW 358 (405)
Q Consensus 345 VVGagHL~GI~~~~ 358 (405)
+|||+|+.|-+++.
T Consensus 272 aVGAlHL~G~e~L~ 285 (299)
T COG3735 272 AVGALHLPGPEGLV 285 (299)
T ss_pred EeccccccCcccHH
Confidence 99999999977653
No 6
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=96.08 E-value=0.13 Score=48.95 Aligned_cols=176 Identities=17% Similarity=0.188 Sum_probs=73.4
Q ss_pred CceEEEEecccCChhh----HHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCCCchhHHHHHHHhcc---chHHHHHH
Q 046404 142 TCDVYLVGTAHVSKES----CREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKH---NTFGILYS 214 (405)
Q Consensus 142 ~~~IYLvGTaHvS~~S----a~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~p~~~~l~~~~k~~~---~~~~l~ls 214 (405)
+.+|.+||=.|-.+.. .+-++.+....++=+|.+|.=....+ ..++.+..+. ..|.-.+.
T Consensus 13 ~~~vVllGE~Hdn~~~H~~Ql~ll~~L~~~~~~~al~lEmf~~~~Q-------------~~Ld~~~~g~i~e~~l~~~~~ 79 (213)
T PF04187_consen 13 NADVVLLGEQHDNPDHHRLQLELLRALYAQRPPLALGLEMFERDQQ-------------PALDRYLAGKIDEEELLEQLD 79 (213)
T ss_dssp T-SEEEEEE-TT-HHHHHHHHHHHHHHHHTT--EEEEEEEEEGGGH-------------HHHHHHHHTG--TTTHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCcccc-------------HHHHHHHhCcccHHHHHHHhc
Confidence 5689999999999955 33333433455677888885333322 2222222221 11110001
Q ss_pred HHHHHHhhhcCCC-ChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHh---hhcCChHHHHHHHHHHHHHhccCCCHHHHH
Q 046404 215 WFLAKVASHLEIF-PGSEFRVAFEEAMKYGGKVILGDRPVQITLRRT---WEKMPLWHKIKLLYSFLFQAFFLPSAEDLN 290 (405)
Q Consensus 215 ~~l~~la~~lGv~-PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl---~~~Ls~~ek~kll~~ll~~~~~~p~~eeie 290 (405)
|. + ++. +-...+--++.|++.++||+=+..|-+..-+-. +++|+..++..+... ... ..+..+
T Consensus 80 w~-----~--~W~~~~~~Y~pl~~~Ar~~~ipviA~N~pr~~~~~V~~~G~~~L~~~~r~~l~~~-----~~~-~~~~~~ 146 (213)
T PF04187_consen 80 WD-----R--RWPNDWALYRPLVEFARENGIPVIALNVPRELVRKVAREGLDSLSEEERAWLPPD-----IPL-PDPAYR 146 (213)
T ss_dssp -------T--TS---GGGTHHHHHHHHTSS--EEEEE--HHHHHHHHT---------T------S-----SSS--HHHHH
T ss_pred cc-----c--CCCCchHHHHHHHHHHHHCCCCEEEecCCHHHHHHHHHhcccchhhhhHhhcCCC-----CCC-ChHHHH
Confidence 10 0 121 122334457899999999996666655532211 234444443222210 001 112222
Q ss_pred HHHHhccchhhHHHHHHHHHHhChhhhhhhHH---hHHHHHHHHHHHhhhcCCcEEEEEcCCCch
Q 046404 291 RMLKEMDDVDMLTLVIQEMSKAFPTLMETLVH---ERDQYMSSTLLKVATEHSSVVAVVGKGHLQ 352 (405)
Q Consensus 291 ~ll~~l~~~D~l~~l~~em~~~~P~l~~~LId---ERD~yMA~~L~~l~~~~~~VVaVVGagHL~ 352 (405)
.. +..++.......|.-.+.++. -||..||..|.+...+++++|+|+|.||+.
T Consensus 147 ~~---------~~~~~~~h~~~~~~~~~~~~~aQ~~~D~~MA~~i~~~~~~~~~vv~i~G~gH~~ 202 (213)
T PF04187_consen 147 AR---------LQEIFAGHCGMLPESLERFYEAQQLWDATMAESIAAALHPGRPVVVIAGNGHVR 202 (213)
T ss_dssp HH---------HHHHHHHHT--TTTTHHHHHHHHHHHHHHHHHHHHH-S---SEEEEEEEHHHH-
T ss_pred HH---------HHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCeEEEEeCcchhc
Confidence 11 122222221112211222221 299999999999876678999999999984
No 7
>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]
Probab=95.73 E-value=0.00074 Score=67.56 Aligned_cols=108 Identities=36% Similarity=0.331 Sum_probs=84.2
Q ss_pred HhhhcCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCCCHHHHHHHHHhccch
Q 046404 220 VASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDV 299 (405)
Q Consensus 220 la~~lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p~~eeie~ll~~l~~~ 299 (405)
+.++...-+|++|+.+++.|-+.|-.+.|+||-++....+-.
T Consensus 131 l~se~evl~g~~f~~~~~~~~~~gG~~~L~lrsv~a~~~~dL-------------------------------------- 172 (359)
T KOG2860|consen 131 LLSEAEVLNGAKFRGIFEEAGKIGGIVFLLLRSVSAKDLGDL-------------------------------------- 172 (359)
T ss_pred hhccCcccCCcceeeeeccccccCceEehhhhhhhhhhcccc--------------------------------------
Confidence 345566779999999999999999999999986664221110
Q ss_pred hhHH-HHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEEcCCCchhhhhhcCCCCCCc
Q 046404 300 DMLT-LVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVH 365 (405)
Q Consensus 300 D~l~-~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVVGagHL~GI~~~~~~p~~~~ 365 (405)
|++. .-+..+.+.|+.+...++++||++|.-+|++...+....+++++-+|+.++++.|...++++
T Consensus 173 dmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~eLs~~~a~~lv~~vt~s~~~s~~t~eve 239 (359)
T KOG2860|consen 173 DMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALSELSSWQAVVLVGHVTFSKKNSIQTEEVE 239 (359)
T ss_pred ccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHHhcchhheeeEEEEEEEeeccccchhhhh
Confidence 1110 11344567789999999999999999999999888889999999999999999998765543
No 8
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.86 E-value=17 Score=36.54 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=25.2
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhcccC
Q 046404 368 MTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405 (405)
Q Consensus 368 ~~lP~~~~~~~~~k~~~~~~~~~~~~~~~~g~~~~~~~ 405 (405)
+.-|+.. ...+|-.|+..++++.+|+||+|.+.||
T Consensus 72 ~~~P~~~---~~~rwrdy~vmAvi~aGi~y~~y~~~K~ 106 (300)
T KOG2629|consen 72 IIQPQQN---VLRRWRDYFVMAVILAGIAYAAYRFVKS 106 (300)
T ss_pred hcCCCcc---chhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3346554 3466667777788888999999998774
No 9
>PRK01844 hypothetical protein; Provisional
Probab=40.63 E-value=26 Score=28.18 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhhhccc
Q 046404 387 GVAVAGVAIISGIYINCK 404 (405)
Q Consensus 387 ~~~~~~~~~~~g~~~~~~ 404 (405)
++++++ +++.|||+++|
T Consensus 11 I~~li~-G~~~Gff~ark 27 (72)
T PRK01844 11 VVALVA-GVALGFFIARK 27 (72)
T ss_pred HHHHHH-HHHHHHHHHHH
Confidence 333333 56789998876
No 10
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.38 E-value=70 Score=31.87 Aligned_cols=59 Identities=15% Similarity=0.323 Sum_probs=47.8
Q ss_pred ccCCCCCCCCCCcEEEEeccCCC-----------CCCCceEEEEecccCChhhHHHHHHHHHhhC-------CCEEEE
Q 046404 116 ETKKVLPEELPRSVVILTCDSTA-----------EGGTCDVYLVGTAHVSKESCREVEAIIDFLK-------PQVVFL 175 (405)
Q Consensus 116 ~~~~~lp~~~~~~v~~l~~~~~~-----------~~~~~~IYLvGTaHvS~~Sa~~V~~~I~~vk-------PD~VvV 175 (405)
.++++||. +|+.+-+++.+++| ..+.++++++.|.=-...++.++.++|+... +|+|+|
T Consensus 5 ~~k~~lP~-~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii 81 (319)
T PF02601_consen 5 NRKKPLPK-FPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIII 81 (319)
T ss_pred ccCCCCCC-CCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEE
Confidence 35667776 77889999999875 2567899999999888888899998888873 688876
No 11
>PRK14762 membrane protein; Provisional
Probab=39.03 E-value=30 Score=22.37 Aligned_cols=21 Identities=14% Similarity=0.512 Sum_probs=13.2
Q ss_pred hHHHHHHHH--HHHHHHHHHhhh
Q 046404 380 LKVLSSLGV--AVAGVAIISGIY 400 (405)
Q Consensus 380 ~k~~~~~~~--~~~~~~~~~g~~ 400 (405)
+|++.|++. .++|.+.++|.+
T Consensus 1 mki~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 1 MKIILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHH
Confidence 366777654 556666677754
No 12
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=37.79 E-value=36 Score=27.07 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 046404 386 LGVAVAGVAIISGIYINCK 404 (405)
Q Consensus 386 ~~~~~~~~~~~~g~~~~~~ 404 (405)
++++++| +|++|+|..++
T Consensus 10 ICVaii~-lIlY~iYnr~~ 27 (68)
T PF05961_consen 10 ICVAIIG-LILYGIYNRKK 27 (68)
T ss_pred HHHHHHH-HHHHHHHhccc
Confidence 3445555 89999998764
No 13
>PHA03049 IMV membrane protein; Provisional
Probab=36.77 E-value=38 Score=26.84 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhccc
Q 046404 387 GVAVAGVAIISGIYINCK 404 (405)
Q Consensus 387 ~~~~~~~~~~~g~~~~~~ 404 (405)
+++++| +|++|+|.-++
T Consensus 11 CVaIi~-lIvYgiYnkk~ 27 (68)
T PHA03049 11 CVVIIG-LIVYGIYNKKT 27 (68)
T ss_pred HHHHHH-HHHHHHHhccc
Confidence 446666 89999998654
No 14
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=34.54 E-value=81 Score=28.96 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.4
Q ss_pred ceEEEEecccCChhh--------HHHHHHHHHhhCCCEEEEee
Q 046404 143 CDVYLVGTAHVSKES--------CREVEAIIDFLKPQVVFLEL 177 (405)
Q Consensus 143 ~~IYLvGTaHvS~~S--------a~~V~~~I~~vkPD~VvVEL 177 (405)
-.+.=.|+.+....+ -++++++|++.+||.|+||=
T Consensus 23 ~~~v~~G~I~t~~~~~~~RL~~I~~~l~~~i~~y~P~~~aiE~ 65 (156)
T TIGR00228 23 LSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPNYFAIEQ 65 (156)
T ss_pred EEEEEeeEEECCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeH
Confidence 345566777764422 67889999999999999995
No 15
>PRK00523 hypothetical protein; Provisional
Probab=33.03 E-value=40 Score=27.16 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=8.8
Q ss_pred HHHHhhhhccc
Q 046404 394 AIISGIYINCK 404 (405)
Q Consensus 394 ~~~~g~~~~~~ 404 (405)
+++.|||+++|
T Consensus 18 G~~~Gffiark 28 (72)
T PRK00523 18 GGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHH
Confidence 56789998876
No 16
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=29.09 E-value=4.4e+02 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhh
Q 046404 230 SEFRVAFEEAMKYGGKVILGDRPVQITLRRTWE 262 (405)
Q Consensus 230 ~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~ 262 (405)
.+...|.+.|++.|++++.+....+-++.+.-+
T Consensus 106 ~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad 138 (340)
T PRK11382 106 EEVIKALELGRACGALTAAFTKRADSPITSAAE 138 (340)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHHHhCC
Confidence 478899999999999999887766666666554
No 17
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=27.28 E-value=2.1e+02 Score=28.45 Aligned_cols=77 Identities=21% Similarity=0.149 Sum_probs=53.0
Q ss_pred CCceEEEEecccCChhhHHHHHHHHHh-----hCCCEEEEeecchhhhccCCCCCCCCchhHHHHHHHhccchHHHHHHH
Q 046404 141 GTCDVYLVGTAHVSKESCREVEAIIDF-----LKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSW 215 (405)
Q Consensus 141 ~~~~IYLvGTaHvS~~Sa~~V~~~I~~-----vkPD~VvVELc~sR~~~L~~~~~~~p~~~~l~~~~k~~~~~~~l~ls~ 215 (405)
+|..+.-+++.+...-..++++++|+. .+|.+|++|.+...... .
T Consensus 91 ~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG----------------------~-------- 140 (290)
T PF01212_consen 91 SGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGG----------------------T-------- 140 (290)
T ss_dssp TTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTS----------------------B--------
T ss_pred cCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCC----------------------e--------
Confidence 467788888877677788999999998 67899999987554211 0
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcC
Q 046404 216 FLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKM 264 (405)
Q Consensus 216 ~l~~la~~lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~L 264 (405)
+.+-+|+++-.+.|+++|++++ .|- .|+|+++
T Consensus 141 ----------~~s~~el~ai~~~a~~~gl~lh-mDG------ARl~~a~ 172 (290)
T PF01212_consen 141 ----------VYSLEELRAISELAREHGLPLH-MDG------ARLANAA 172 (290)
T ss_dssp -------------HHHHHHHHHHHHHHT-EEE-EEE------TTHHHHH
T ss_pred ----------eCCHHHHHHHHHHHHhCceEEE-Eeh------hhHHHhh
Confidence 1134577777789999999999 443 3666654
No 18
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=26.75 E-value=49 Score=25.34 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=18.3
Q ss_pred hHHH---HHHHHHHHHHHHHHhhhhcccC
Q 046404 380 LKVL---SSLGVAVAGVAIISGIYINCKK 405 (405)
Q Consensus 380 ~k~~---~~~~~~~~~~~~~~g~~~~~~~ 405 (405)
||++ .|+++.++.+++++ ||+.+||
T Consensus 32 WKlfvGQ~YAiPif~i~aiit-Fyinkk~ 59 (60)
T PF13209_consen 32 WKLFVGQAYAIPIFIITAIIT-FYINKKK 59 (60)
T ss_pred hhheecchhHhHHHHHHHHHh-heecccc
Confidence 5554 37787777777666 9999886
No 19
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=26.41 E-value=1.7e+02 Score=26.25 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred eEEEEecccCCh---------hhHHHHHHHHHhhCCCEEEEee
Q 046404 144 DVYLVGTAHVSK---------ESCREVEAIIDFLKPQVVFLEL 177 (405)
Q Consensus 144 ~IYLvGTaHvS~---------~Sa~~V~~~I~~vkPD~VvVEL 177 (405)
.+.=.|+.+.+. ...+.+.++|+..+||.|++|-
T Consensus 25 ~~~~~g~i~t~~~~~~~~rl~~I~~~l~~~i~~~~Pd~vaiE~ 67 (154)
T cd00529 25 IYLASGVIRTSSDAPLPSRLKTIYDGLNEVIDQFQPDVVAIER 67 (154)
T ss_pred EEEEeeEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 344466777763 3478999999999999999995
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.21 E-value=63 Score=25.93 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=9.6
Q ss_pred HHHHHHhhhhccc
Q 046404 392 GVAIISGIYINCK 404 (405)
Q Consensus 392 ~~~~~~g~~~~~~ 404 (405)
+++++.|||+++|
T Consensus 15 l~G~~~G~fiark 27 (71)
T COG3763 15 LAGLIGGFFIARK 27 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3367788998876
No 21
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=26.19 E-value=1.2e+02 Score=27.69 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEecccC--ChhhHHHHHHHHHhhCCCEEEEeecchh
Q 046404 145 VYLVGTAHV--SKESCREVEAIIDFLKPQVVFLELCSSR 181 (405)
Q Consensus 145 IYLvGTaHv--S~~Sa~~V~~~I~~vkPD~VvVELc~sR 181 (405)
+-++|+.|. .+...+++.+.|++.+||+|+|=+...+
T Consensus 75 l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 75 LRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCH
Confidence 455555553 3344555556666666666666555444
No 22
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.06 E-value=1.5e+02 Score=31.02 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=47.7
Q ss_pred ccCCCCCCCCCCcEEEEeccCCC-----------CCCCceEEEEecccCChhhHHHHHHHHHhhC---CCEEEE
Q 046404 116 ETKKVLPEELPRSVVILTCDSTA-----------EGGTCDVYLVGTAHVSKESCREVEAIIDFLK---PQVVFL 175 (405)
Q Consensus 116 ~~~~~lp~~~~~~v~~l~~~~~~-----------~~~~~~IYLvGTaHvS~~Sa~~V~~~I~~vk---PD~VvV 175 (405)
..+++||. +|+.+-+++.+++| ..+.++|++++|.=-....+.++-++|+... +|+|+|
T Consensus 126 ~~k~~lP~-~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii 198 (438)
T PRK00286 126 ERKKPLPF-FPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIV 198 (438)
T ss_pred hhcCCCCC-CCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEE
Confidence 45778886 68899999999875 2556899999998888888899988887764 377776
No 23
>COG5323 Uncharacterized conserved protein [Function unknown]
Probab=25.65 E-value=2.1e+02 Score=29.08 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=29.0
Q ss_pred ccCCCCCCCCCCcEEEEeccCCCCCCCceEEEEec
Q 046404 116 ETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGT 150 (405)
Q Consensus 116 ~~~~~lp~~~~~~v~~l~~~~~~~~~~~~IYLvGT 150 (405)
.-...-|+.|.+-|+++..|.++.+..|-|.+.|-
T Consensus 239 ~c~ea~p~pl~rivvavdppa~~g~~scgivvag~ 273 (410)
T COG5323 239 RCREARPAPLDRIVVAVDPPATAGGDSCGIVVAGR 273 (410)
T ss_pred HHHhcCCCCcceEEEEecCCCcCCCCceeeEEEEe
Confidence 33446688899999999999888888899999987
No 24
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=24.74 E-value=98 Score=30.42 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCC
Q 046404 158 CREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKV 192 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~ 192 (405)
.++..+...++|||.|++ .+..|.+.-....|++
T Consensus 73 t~e~~~ia~~~kP~~vtL-VPE~r~e~TTegGldv 106 (239)
T PF03740_consen 73 TEEMVDIALKVKPDQVTL-VPEKREELTTEGGLDV 106 (239)
T ss_dssp SHHHHHHHHHH--SEEEE-E--SGGGBSTTSSB-T
T ss_pred CHHHHHHHHhCCcCEEEE-CCCCCCCcCCCcCChh
Confidence 466677888899999987 4566655444444543
No 25
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=24.46 E-value=1.4e+02 Score=26.64 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=23.1
Q ss_pred eEEEEecccCChh---------hHHHHHHHHHhhCCCEEEEeec
Q 046404 144 DVYLVGTAHVSKE---------SCREVEAIIDFLKPQVVFLELC 178 (405)
Q Consensus 144 ~IYLvGTaHvS~~---------Sa~~V~~~I~~vkPD~VvVELc 178 (405)
...=.||.+.+.. -.+.+.++|++.+||.|++|-.
T Consensus 24 ~~i~~G~I~t~~~~~~~~Rl~~I~~~l~~li~~~~P~~vaiE~~ 67 (149)
T PF02075_consen 24 RLIDYGTIKTSSKDSLPERLKEIYEELEELIEEYNPDEVAIEEI 67 (149)
T ss_dssp EEEEEEEEE---S--HHHHHHHHHHHHHHHHHHH--SEEEEEE-
T ss_pred EEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEeehh
Confidence 4455677877753 2788999999999999999974
No 26
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=24.40 E-value=70 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhCCCEEEEeec
Q 046404 158 CREVEAIIDFLKPQVVFLELC 178 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc 178 (405)
.+.+.++|++.+||.|++|-.
T Consensus 50 ~~~l~~~i~~~~Pd~vaiE~~ 70 (164)
T PRK00039 50 YDGLSELIDEYQPDEVAIEEV 70 (164)
T ss_pred HHHHHHHHHHhCCCEEEEehh
Confidence 689999999999999999974
No 27
>PRK05590 hypothetical protein; Provisional
Probab=22.97 E-value=61 Score=30.15 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=45.3
Q ss_pred HHHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCC-cEEEEEcCCCchhhhhhcCCCCCCccccC
Q 046404 303 TLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHS-SVVAVVGKGHLQGIKNYWKQPVPVHDLMT 369 (405)
Q Consensus 303 ~~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~-~VVaVVGagHL~GI~~~~~~p~~~~~L~~ 369 (405)
.+++.+.-..--.+|+.|+.+-+.....++.+++++.+ .++.. .|-|+||..-|..|.+++.+.+
T Consensus 21 ~~fw~~y~~~ek~iy~~iL~~~~~~~~gtv~ela~k~~~~~~~~--~GfldGin~sl~~~~~le~~~e 86 (166)
T PRK05590 21 AAFWKEYGSVEKNIYTQILANHKEVVEGTVKELAEKFGTSVVFF--MGFLDGINDSLKEPLDLEKLEE 86 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceeeeeHHHHHHHhCCChhhh--hhhhhcchhhhCCCCCcccccc
Confidence 33444433333567888888888888888988887643 23333 3789999999999888776654
No 28
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=22.82 E-value=9.5e+02 Score=27.17 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=35.3
Q ss_pred EEEEeccCCCCCCCceEEEE---ecccCChhhHHH--HHHHHHhhCCCEEEEeecchhhh
Q 046404 129 VVILTCDSTAEGGTCDVYLV---GTAHVSKESCRE--VEAIIDFLKPQVVFLELCSSRVS 183 (405)
Q Consensus 129 v~~l~~~~~~~~~~~~IYLv---GTaHvS~~Sa~~--V~~~I~~vkPD~VvVELc~sR~~ 183 (405)
|+|-+-+..-...+.+|.++ ||.-++..|-+| +++.+.+.+||+|+-=+|.+..+
T Consensus 36 vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe 95 (653)
T COG0370 36 VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE 95 (653)
T ss_pred eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH
Confidence 44444332222334444444 666666666444 68899999999999999987754
No 29
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=22.74 E-value=1.2e+02 Score=29.84 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCCCEEEEeecchhhh
Q 046404 158 CREVEAIIDFLKPQVVFLELCSSRVS 183 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc~sR~~ 183 (405)
.++.-+...++|||.|++ .+..|.+
T Consensus 72 t~em~~ia~~~kP~~vtL-VPEkr~E 96 (234)
T cd00003 72 TEEMLEIALEVKPHQVTL-VPEKREE 96 (234)
T ss_pred CHHHHHHHHHCCCCEEEE-CCCCCCC
Confidence 467777778889999886 4445544
No 30
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=21.97 E-value=1.3e+02 Score=29.45 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCCEEEEeecchhhhccCCCCCC
Q 046404 158 CREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLK 191 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~ 191 (405)
.++.-+...++|||.|++ .+..|-+.-....|+
T Consensus 72 ~~emi~ia~~vkP~~vtL-VPEkr~ElTTegGld 104 (237)
T TIGR00559 72 TEEMIRIAEEIKPEQVTL-VPEARDEVTTEGGLD 104 (237)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCCCccCCcCch
Confidence 456677777888998886 445554433333343
No 31
>PRK10132 hypothetical protein; Provisional
Probab=21.40 E-value=78 Score=27.27 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhcccC
Q 046404 390 VAGVAIISGIYINCKK 405 (405)
Q Consensus 390 ~~~~~~~~g~~~~~~~ 405 (405)
.+|++++.|+.+++||
T Consensus 93 aagvG~llG~Ll~RR~ 108 (108)
T PRK10132 93 AAAVGIFIGALLSLRK 108 (108)
T ss_pred HHHHHHHHHHHHhccC
Confidence 3456778899999886
No 32
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=21.02 E-value=46 Score=32.15 Aligned_cols=17 Identities=29% Similarity=0.143 Sum_probs=7.1
Q ss_pred chhHHHHHHHHHHHHHH
Q 046404 378 SALKVLSSLGVAVAGVA 394 (405)
Q Consensus 378 ~~~k~~~~~~~~~~~~~ 394 (405)
..+-++..++++++|++
T Consensus 159 ~~g~ll~lllv~l~gGG 175 (218)
T PF14283_consen 159 GMGSLLLLLLVALIGGG 175 (218)
T ss_pred chHHHHHHHHHHHhhcc
Confidence 33444433344444433
No 33
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=20.79 E-value=1.4e+02 Score=29.47 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCCCEEEEeecchhhhc
Q 046404 158 CREVEAIIDFLKPQVVFLELCSSRVSM 184 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc~sR~~~ 184 (405)
.++.-+...++|||.|++ .+..|.+.
T Consensus 75 ~~em~~ia~~~kP~~vtL-VPE~r~E~ 100 (239)
T PRK05265 75 TEEMLDIALEVKPHQVTL-VPEKREEL 100 (239)
T ss_pred CHHHHHHHHHCCCCEEEE-CCCCCCCc
Confidence 356777778889999886 44455443
Done!