Query 046404
Match_columns 405
No_of_seqs 174 out of 575
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g5g_X Putative lipoprotein; c 93.9 1.4 4.7E-05 42.2 15.0 34 324-360 200-236 (268)
2 2qgm_A Succinoglycan biosynthe 84.1 6.5 0.00022 40.1 11.2 41 141-181 72-117 (445)
3 3b55_A Succinoglycan biosynthe 65.5 1E+02 0.0035 31.3 14.2 41 141-181 73-118 (451)
4 2ebf_X Dermonecrotic toxin; pa 54.0 46 0.0016 35.4 9.1 92 145-253 372-464 (746)
5 4ep4_A Crossover junction endo 41.1 46 0.0016 29.4 6.0 32 148-179 33-73 (166)
6 3gk0_A PNP synthase, pyridoxin 32.0 50 0.0017 31.8 4.9 34 158-192 104-137 (278)
7 2k1k_A Ephrin type-A receptor 31.6 69 0.0024 21.5 4.2 28 378-405 9-38 (38)
8 3knz_A Putative sugar binding 30.8 1.8E+02 0.0061 28.3 9.0 33 230-262 111-143 (366)
9 2aml_A SIS domain protein; 469 27.8 2.3E+02 0.008 27.3 9.2 32 230-261 111-143 (373)
10 1m5w_A Pyridoxal phosphate bio 27.7 55 0.0019 30.9 4.3 34 158-192 76-109 (243)
11 3o6c_A PNP synthase, pyridoxin 26.8 91 0.0031 29.7 5.7 77 158-251 75-154 (260)
12 3g68_A Putative phosphosugar i 25.4 2.8E+02 0.0096 26.6 9.3 33 230-262 96-128 (352)
13 1hjr_A Holliday junction resol 24.8 46 0.0016 29.0 3.1 35 145-179 27-69 (158)
No 1
>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1
Probab=93.92 E-value=1.4 Score=42.25 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEcCCCch---hhhhhcCC
Q 046404 324 RDQYMSSTLLKVATEHSSVVAVVGKGHLQ---GIKNYWKQ 360 (405)
Q Consensus 324 RD~yMA~~L~~l~~~~~~VVaVVGagHL~---GI~~~~~~ 360 (405)
||+.||..|.+ .++++|+|.|.||.. ||-.++.+
T Consensus 200 rD~~MA~~i~~---~~~~vv~iaG~gH~~~~~Gvp~~l~~ 236 (268)
T 2g5g_X 200 KDRRMADVLVH---HVNKVLLLAGSYHTSKKIGIPLHIQD 236 (268)
T ss_dssp HHHHHHHHHHH---CSSEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred HHHHHHHHHHh---CCCeEEEEeCcchhcCCCcHHHHHHH
Confidence 99999999975 367899999999998 88888774
No 2
>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus cereus atcc 14579} SCOP: c.150.1.3
Probab=84.11 E-value=6.5 Score=40.14 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=36.0
Q ss_pred CCceEEEEec-ccCChhh----HHHHHHHHHhhCCCEEEEeecchh
Q 046404 141 GTCDVYLVGT-AHVSKES----CREVEAIIDFLKPQVVFLELCSSR 181 (405)
Q Consensus 141 ~~~~IYLvGT-aHvS~~S----a~~V~~~I~~vkPD~VvVELc~sR 181 (405)
++.+|.+||= .|...+. ++-++.+|++....+|++|-+-..
T Consensus 72 ~~ariV~lGEatHG~~e~~~~r~~l~r~Lve~~gf~~va~E~~~~~ 117 (445)
T 2qgm_A 72 GNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAMEEDWGN 117 (445)
T ss_dssp TTCSEEEECCSSSCBHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred cCCCEEEEcCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEecChHH
Confidence 4678999998 9999977 888999999999999999998654
No 3
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} SCOP: c.150.1.3 PDB: 2rad_A
Probab=65.45 E-value=1e+02 Score=31.31 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCceEEEEec-ccCChhh----HHHHHHHHHhhCCCEEEEeecchh
Q 046404 141 GTCDVYLVGT-AHVSKES----CREVEAIIDFLKPQVVFLELCSSR 181 (405)
Q Consensus 141 ~~~~IYLvGT-aHvS~~S----a~~V~~~I~~vkPD~VvVELc~sR 181 (405)
++.+|.+||= .|...+. ++-++.+|++...++|++|-+-..
T Consensus 73 ~~ariV~lGEatHG~~ef~~~r~~l~r~Lve~~Gf~~va~E~d~~~ 118 (451)
T 3b55_A 73 GSASIVGLGEATHGAHEVFTMKHRIVKYLVSEKGFTNLVLEEGWDR 118 (451)
T ss_dssp TTCSEEEEEESCTTBHHHHHHHHHHHHHHHHHSCCCEEEEEEEHHH
T ss_pred cCCCEEEEeCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEecChHH
Confidence 4678999998 7999977 888999999999999999997644
No 4
>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
Probab=54.01 E-value=46 Score=35.43 Aligned_cols=92 Identities=10% Similarity=-0.077 Sum_probs=51.5
Q ss_pred EEEEecccCChhhHHHHHHHHHhhCCCEEEEe-ecchhhhccCCCCCCCCchhHHHHHHHhccchHHHHHHHHHHHHhhh
Q 046404 145 VYLVGTAHVSKESCREVEAIIDFLKPQVVFLE-LCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASH 223 (405)
Q Consensus 145 IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVE-Lc~sR~~~L~~~~~~~p~~~~l~~~~k~~~~~~~l~ls~~l~~la~~ 223 (405)
=-+||=.|.|.....+=-..+.+..-..+++| ||.+..+. .++.+-+.+++-.. +..+++.. .
T Consensus 372 GLVIGESHsSkRFIIdNM~~Lk~~GVtTLYMEHL~SDlhQA-------------dLD~YLqTG~MSk~-L~a~Lktl--d 435 (746)
T 2ebf_X 372 GVAFQNSSKSIDFFLNNLTTFIDNGLTEIAISDLPYDIVQQ-------------EISQFLQGSNEWKT-LDAMLFNL--D 435 (746)
T ss_dssp EEEEESCHHHHHHHHHTHHHHHHTTCCEEEEEEEEHHHHHH-------------HHHHHHTTCSCCHH-HHHHHHHH--T
T ss_pred ceEEeccchhHHHHHHHHHHHHhCCceeehHhhhhhHHHHH-------------HHHHHHhcCCcchH-HHHHHhhc--c
Confidence 46888888876555544455555567778888 44444332 22222223322111 11122211 1
Q ss_pred cCCCChHHHHHHHHHHHHhCCeEEEcCchh
Q 046404 224 LEIFPGSEFRVAFEEAMKYGGKVILGDRPV 253 (405)
Q Consensus 224 lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdi 253 (405)
.| .-..-|+.-++.|++.|++|.-+|-..
T Consensus 436 ~G-hl~~sF~~Li~~AR~nGIRIrAID~as 464 (746)
T 2ebf_X 436 KG-DINGAFRKLLQSAKDNNIKFRAIGHSD 464 (746)
T ss_dssp TT-CSSCHHHHHHHHHHHTTCEEEEEECCT
T ss_pred cc-cccHHHHHHHHHHHHcCceEEEecccc
Confidence 12 122378888999999999999888644
No 5
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=41.07 E-value=46 Score=29.36 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=26.2
Q ss_pred EecccCCh---------hhHHHHHHHHHhhCCCEEEEeecc
Q 046404 148 VGTAHVSK---------ESCREVEAIIDFLKPQVVFLELCS 179 (405)
Q Consensus 148 vGTaHvS~---------~Sa~~V~~~I~~vkPD~VvVELc~ 179 (405)
.|+.+.+. .-.+.+.++|++.+||.|+||-..
T Consensus 33 ~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F 73 (166)
T 4ep4_A 33 GEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQF 73 (166)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred eCeEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeehh
Confidence 48888765 236889999999999999999764
No 6
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=31.98 E-value=50 Score=31.75 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCC
Q 046404 158 CREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKV 192 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~ 192 (405)
.++..+...++||+.|++ ++..|-+.-....|++
T Consensus 104 t~emi~ial~~kP~~vtL-VPEkreE~TTegGlDv 137 (278)
T 3gk0_A 104 TPEMLDIACEIRPHDACL-VPEKRSELTTEGGLDV 137 (278)
T ss_dssp SHHHHHHHHHHCCSEEEE-CCCSGGGBCSSSSBCT
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCCCcCCCcchhh
Confidence 467777888999999997 4556655444445554
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=31.57 E-value=69 Score=21.52 Aligned_cols=28 Identities=4% Similarity=0.025 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHH--HHHHhhhhcccC
Q 046404 378 SALKVLSSLGVAVAGV--AIISGIYINCKK 405 (405)
Q Consensus 378 ~~~k~~~~~~~~~~~~--~~~~g~~~~~~~ 405 (405)
+-.-+.+.++-.++|+ +++.+|++|+||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 3344554443233332 334456777775
No 8
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=30.77 E-value=1.8e+02 Score=28.32 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhh
Q 046404 230 SEFRVAFEEAMKYGGKVILGDRPVQITLRRTWE 262 (405)
Q Consensus 230 ~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~ 262 (405)
.|...|++.|++.|++++.+....+-++.|.-+
T Consensus 111 ~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD 143 (366)
T 3knz_A 111 LSTLAAMERARNVGHITASMAGVAPATIDRAAD 143 (366)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCS
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCChhhhhcC
Confidence 478899999999999999777666666655543
No 9
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=27.84 E-value=2.3e+02 Score=27.35 Aligned_cols=32 Identities=16% Similarity=-0.013 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHh-CCeEEEcCchhHHHHHHhh
Q 046404 230 SEFRVAFEEAMKY-GGKVILGDRPVQITLRRTW 261 (405)
Q Consensus 230 ~Ef~~Aie~A~e~-Ga~VvLgDRdiqiTlrRl~ 261 (405)
.+...|++.|++. |++++.+.-..+-++.+.-
T Consensus 111 ~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~a 143 (373)
T 2aml_A 111 TSTISALERVKKEASVPVVALTSDVTSEIAEFA 143 (373)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGC
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCChHHHhc
Confidence 4778899999999 9999876665555555543
No 10
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=27.70 E-value=55 Score=30.88 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCC
Q 046404 158 CREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKV 192 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~ 192 (405)
.++......++||+.|++ .+..|-+.-....|++
T Consensus 76 t~emi~ia~~~kP~~vtL-VPE~r~e~TTegGldv 109 (243)
T 1m5w_A 76 TEEMLAIAVETKPHFCCL-VPEKRQEVTTEGGLDV 109 (243)
T ss_dssp SHHHHHHHHHHCCSEEEE-CCCCSSCSSCCSCCCS
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCCCcCCCcchhH
Confidence 356777778899999997 4455544433344554
No 11
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=26.80 E-value=91 Score=29.65 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCC--CchhHHHHHHHhccchHHHHHHHHHHHHhhhcCCCChHHHHHH
Q 046404 158 CREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKV--PTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVA 235 (405)
Q Consensus 158 a~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~--p~~~~l~~~~k~~~~~~~l~ls~~l~~la~~lGv~PG~Ef~~A 235 (405)
.++..+...++||+.|++ ++..|-+.-....|+. ....+.++.++..+-.. |+ =++|..+ .
T Consensus 75 t~emi~ial~~kP~~vtL-VPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrV----SL---------FIDpd~~---q 137 (260)
T 3o6c_A 75 NDEILNLALKLKPHRVTL-VPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEV----SL---------FINPSLE---D 137 (260)
T ss_dssp CHHHHHHHHHHCCSEEEE-CCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEE----EE---------EECSCHH---H
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEE----EE---------EeCCCHH---H
Confidence 467777788899999997 4556644433334543 12223333333322100 00 1455554 4
Q ss_pred HHHHHHhCCeEE-EcCc
Q 046404 236 FEEAMKYGGKVI-LGDR 251 (405)
Q Consensus 236 ie~A~e~Ga~Vv-LgDR 251 (405)
+++|.+.|++++ |-.-
T Consensus 138 i~aA~~~GAd~IELhTG 154 (260)
T 3o6c_A 138 IEKSKILKAQFIELHTG 154 (260)
T ss_dssp HHHHHHTTCSEEEECCH
T ss_pred HHHHHHhCCCEEEEech
Confidence 778888888877 5444
No 12
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=25.37 E-value=2.8e+02 Score=26.59 Aligned_cols=33 Identities=12% Similarity=-0.078 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhh
Q 046404 230 SEFRVAFEEAMKYGGKVILGDRPVQITLRRTWE 262 (405)
Q Consensus 230 ~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~ 262 (405)
.|...|++.|++.|++++.+.-..+-++.+.-+
T Consensus 96 ~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD 128 (352)
T 3g68_A 96 YSTYNAMKLAEDKGCKIASMAGCKNALIDEISD 128 (352)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCS
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCC
Confidence 477889999999999999777666666666543
No 13
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=24.83 E-value=46 Score=29.03 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=26.2
Q ss_pred EEEEecccCCh--------hhHHHHHHHHHhhCCCEEEEeecc
Q 046404 145 VYLVGTAHVSK--------ESCREVEAIIDFLKPQVVFLELCS 179 (405)
Q Consensus 145 IYLvGTaHvS~--------~Sa~~V~~~I~~vkPD~VvVELc~ 179 (405)
+.=.|+.+... .-.+.+.++|++.+||.|+||--.
T Consensus 27 ~v~~G~i~t~~~~~~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf 69 (158)
T 1hjr_A 27 YLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVF 69 (158)
T ss_dssp EEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred EEEeeEEECCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 33467777762 225668999999999999999754
Done!