BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046405
(538 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGL 316
K VGIL VKVL+A L D G SDP+ L+L +D+L +T ++NLNPEWN+ F
Sbjct: 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPEWNKVFTF 66
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMD 369
+KD + LE+ V+D + D +G IPL I +P +LKN D
Sbjct: 67 PIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCY---VLKNKD 115
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF---GLVV 318
L VK+++A +L KD G SDP+VK+ L DK +T VK +NLNP WNE F G
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDI 352
+ + L LQV D+++ +D +G IPL +
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKL----TDDKLPSKKTTVKHRNLNPEWNEEFGL 316
IL VKV+ + L KKD+ GASDPYVKL L + +L +T + LNP+WNEEF
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEP 357
V +P L +V+D ++ D +G +PL + E+P
Sbjct: 82 RV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP 121
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 450 KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVI 484
+TK IKK +P+W EEF F + P++ +L EV
Sbjct: 63 QTKTIKKTLNPKWNEEFYFRVN--PSNHRLLFEVF 95
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTD---DKLPSKKTTVKHRNLNPEWNEEFGLV 317
I+ V+V+ + L KKD++GASDPYV++ L D L S +T ++LNP+WNEE
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 318 VKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPR 358
V P+ L +V+D ++ D +G +PL + E PR
Sbjct: 81 VH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLV 317
++ VKV+ + L KKD++GASDPYV++ L D L S +T ++LNP+WNEE
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 318 VKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN--MDPNDTRN 375
V P+ + +V+D ++ D +G +PL + E PR K+ + P R+
Sbjct: 69 VL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP---RS 124
Query: 376 EKSR--GQVVVEVLYKPFKGDE 395
KSR G + +++ Y P G E
Sbjct: 125 HKSRVKGYLRLKMTYLPKNGSE 146
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEE--F 314
G+L V +++A LK DL G SDPYVK L + +L +KT++K LNP +NE F
Sbjct: 152 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 211
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
+ + E L + V D++ +GH++ +G+ + + P RE ++L N
Sbjct: 212 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLAN 263
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V++L+A+ L KD G SDPYVK+ L D+ +T V + LNP +NE F V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 322 EY--QALELQVYDWEKVGHHDKMGM----NVIPLKDITPEEP 357
E + L VYD+++ HD +G N++ L + P+ P
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 124
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEE--F 314
G+L V +++A LK DL G SDPYVK L + +L +KT++K LNP +NE F
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
+ + E L + V D++ +GH++ +G+ + + P RE ++L N
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLAN 262
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V++L+A+ L KD G SDPYVK+ L D+ +T V + LNP +NE F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 322 EY--QALELQVYDWEKVGHHDKMGM----NVIPLKDITPEEP 357
E + L VYD+++ HD +G N++ L + P+ P
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 123
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 322 EY--QALELQVYDWEKVGHHDKMG-----MNVIPLKDITPE 355
E + L + VYD+++ HD +G MN + +T E
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 144
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 322 EY--QALELQVYDWEKVGHHDKMG-----MNVIPLKDITPEEPREMTLDLLKNMDPNDTR 374
E + L + VYD+++ HD +G MN + +T E +++ +
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE---------WRDLQSAEKE 131
Query: 375 NEKSRGQVVVEVLYKPFKG 393
++ G + + Y P G
Sbjct: 132 EQEKLGDICFSLRYVPTAG 150
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGL 316
G L V +L A LKK D+ G SDPYVK+ L + +L KKTT+K LNP +NE F
Sbjct: 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 317 VVKDPEYQALE--LQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
V + Q ++ + V D++K+G +D +G V + T E R + D+L N
Sbjct: 209 EVPFEQIQKVQVVVTVLDYDKIGKNDAIG-KVFVGYNSTGAELRHWS-DMLAN 259
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 EY--QALELQVYDWEKVGHHDKMG-----MNVIPLKDITPE 355
E + L + VYD+++ HD +G MN + +T E
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 322 EY--QALELQVYDWEKVGHHDKMG-----MNVIPLKDITPE 355
E + L + VYD+++ HD +G MN + +T E
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 322 EY--QALELQVYDWEKVGHHDKMG-----MNVIPLKDITPE 355
E + L + VYD+++ HD +G MN + +T E
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 119
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V ++R + L D G SDP+VKL L D K KT +K + LNPE+NEEF
Sbjct: 37 GGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 318 VK--DPEYQALELQVYDWEKVGHHDKMG 343
+K D ++L++ V+D++ +D +G
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V ++R + L D G SDP+VKL L D K KT +K + LNPE+NEEF
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 318 VK--DPEYQALELQVYDWEKVGHHDKMG 343
+K D ++L++ V+D++ +D +G
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V ++R + L D G SDP+VKL L D K KT +K + LNPE+NEEF
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 318 VK--DPEYQALELQVYDWEKVGHHDKMG 343
+K D ++L++ V+D++ +D +G
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIG 102
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLT-DDKLPSK-KTTVKHRNLNPEWNEEFGLVV 318
+L V V A L D G SDPYVKLKL D K SK KT +LNPEWNE F +
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 319 KDPEY-QALELQVYDWEKVGHHDKMG 343
K+ + + L ++++DW+ +D MG
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMG 258
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
++KTK IK + +P W E F+F L+E D +L VE+
Sbjct: 210 KQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEI 245
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLT-DDKLPSKKTTVKHRN-LNPEWNEEFGLVVK 319
L+V V A L D G SDPYVKLKL D K SK+ T R+ LNP+WNE F +K
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 320 DPEY-QALELQVYDWEKVGHHDKMG 343
+ + L ++++DW++ +D MG
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMG 102
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
++KTK I+ +P+W E F F L+ D +L VE+
Sbjct: 54 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 89
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVK 319
++V V A L D G SDPYVKLKL D L +KT LNP WNE F +K
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 320 DPEYQ-ALELQVYDWEKVGHHDKMG 343
+ + L ++V+DW++ +D MG
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMG 106
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLT-DDKLPSKKTTVKHRN-LNPEWNEEFGLVVK 319
L+V V A L D G SDPYVKLKL D K SK+ T R+ LNP+WNE F +K
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 320 DPEY-QALELQVYDWEKVGHHDKMG 343
+ + L ++++DW++ +D MG
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMG 103
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
++KTK I+ +P+W E F F L+ D +L VE+
Sbjct: 55 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 90
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLT-DDKLPSK-KTTVKHRNLNPEWNEEFGLVV 318
+L V V A L D G SDPYVKLKL D K SK KT +LNPEWNE F +
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 319 KDPEY-QALELQVYDWEKVGHHDKMG 343
K+ + + L ++++DW+ +D MG
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMG 117
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
++KTK IK + +P W E F+F L+E D +L VE+
Sbjct: 69 KQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEI 104
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNL-NPEWNEEF---GL 316
L ++RA LK D G +DPYVKL L S K K RN NP WNE G+
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+D + + L + V D +K GH++ +G LK + + + + L
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNL-NPEWNEEF---GL 316
L ++RA LK D G +DPYVKL L S K K RN NP WNE G+
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+D + + L + V D +K GH++ +G LK + + + + L
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 136
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLT-DDKLPSKKTTVKHRN-LNPEWNEEFGLVVK 319
L+V V A L D G SDPYVKLKL D K SK+ T R+ LNP+WNE F +K
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 320 DPEY-QALELQVYDWEKVGHHDKMG 343
+ + L ++++DW++ +D G
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXG 104
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
++KTK I+ +P+W E F F L+ D +L VE+
Sbjct: 56 KQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEI 91
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V +L A LKK D+ G SDPYVK+ L + +L KKTT+K LNP +NE F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 318 VKDPEYQALE--LQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
V + Q ++ + V D++K+G +D +G V + T E R + D+L N
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIG-KVFVGYNSTGAELRHWS-DMLAN 134
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V +L A LKK D+ G SDPYVK+ L + +L KKTT+K LNP +NE F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 318 VKDPEYQALE--LQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
V + Q ++ + V D++K+G +D +G V + T E R + D+L N
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIG-KVFVGYNSTGAELRHWS-DMLAN 127
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V +L A LKK D+ G SDPYVK+ L + +L KKTT+K LNP +NE F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 318 VKDPEYQALE--LQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
V + Q ++ + V D++K+G +D +G V + T E R + D+L N
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIG-KVFVGYNSTGAELRHWS-DMLAN 126
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKL-TDDKLPSKKTTVKHRNLNPEWNEEFGL 316
P G L V ++ A L+ D + DPYV+L T D+ K + PEWNE F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ---KSNVAEGMGTTPEWNETFIF 64
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNE 376
V + + L+ +++D + D +G IPL+ + E T N ++E
Sbjct: 65 TVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA-------YNVVKDE 116
Query: 377 KSRGQVVVEVLYKP 390
+ +G++ V + +KP
Sbjct: 117 EYKGEIWVALSFKP 130
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
+G L V V+ A +LK G S+PY ++ + S T LNP+WN +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQFFI 442
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE--MTLDLL 365
KD L L ++D ++ D +G IP+ I E+ + MT LL
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLL 491
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPSKKTTVKHRNLNPEWNE- 312
Q L V VL+A L K D+ G SDPYVK+ L ++ KKT VK N +NE
Sbjct: 26 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 85
Query: 313 -EFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVI 347
F + + E ++E V D E+ ++ +G V+
Sbjct: 86 FVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 24/136 (17%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
+ + VL A L KKD DP+ K+ + TVK+ L+P+WN+ + L V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGKT 65
Query: 322 EYQALELQVYDWEKVGHHDKMGM----------NVIP-LKDITPEEPREMTLDLLKNMDP 370
+ ++ + V++ +K+ H K G N I LKD + LDL K ++P
Sbjct: 66 D--SITISVWNHKKI--HKKQGAGFLGCVRLLSNAISRLKDTGYQR-----LDLCK-LNP 115
Query: 371 NDTRNEKSRGQVVVEV 386
+DT + RGQ+VV +
Sbjct: 116 SDT--DAVRGQIVVSL 129
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L + VL A L KKD DP+ K+ + TVK+ L+P+WN+ + L +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYIGKS 63
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMT------LDLLKNMDPNDTRN 375
+ ++ + V++ +K+ H K G + + + LDL K + PND N
Sbjct: 64 D--SVTISVWNHKKI--HKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCK-LGPND--N 116
Query: 376 EKSRGQVVVEV 386
+ RGQ+VV +
Sbjct: 117 DTVRGQIVVSL 127
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 262 LNVKVLRAMKLKKK---DLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
V VLRA K+ K D++ DPYV+L ++ K+T + ++NP WNE F ++
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 79
Query: 319 KDPEYQALELQVYDWEKV 336
+ LE+ + D V
Sbjct: 80 DPNQENVLEITLMDANYV 97
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 264 VKVLRAMKLKKKDLIGASDPYVKLKLT--DDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
V +++A LK D+ G SDPYVK+ L D ++ KKT K RNLNP +NE F +
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 322 EYQ--ALELQVYDWEKVGHHDKMG 343
+ + + + V D +K+ +D +G
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIG 103
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 262 LNVKVLRAMKLKKK---DLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
V VLRA K+ K D++ DPYV+L ++ K+T + ++NP WNE F ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 319 KDPEYQALELQVYDWEKV 336
+ LE+ + D V
Sbjct: 65 DPNQENVLEITLMDANYV 82
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 262 LNVKVLRAMKLKKK---DLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
V VLRA K+ K D++ DPYV+L ++ K+T + ++NP WNE F ++
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 79
Query: 319 KDPEYQALELQVYDWEKV 336
+ LE+ + D V
Sbjct: 80 DPNQENVLEITLMDANYV 97
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF 314
+++ V+ A L+ KD G+SDPYV +++ K K+T + NLNP W E F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENF 68
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 407 QKAPEGTPEGGGLLVVILHEAQDVEGKYHT---NPSARILFRGEEKKTKRIKKNRDPRWE 463
Q +GT + + + + AQ ++ K T +P + +K+TK I N +P WE
Sbjct: 6 QSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWE 65
Query: 464 EEFQFTLEEPPTDDKLHVEVI----STSSRMGLLHPKETLGYIGINLADV 509
E F F + D++ V V+ SR+ +E+ ++G + +V
Sbjct: 66 ENFHFECHN--SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 22/113 (19%)
Query: 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPS---------------KKTTVKH 303
+G L + +L+A L +D G SDP+VK+ L LP ++T
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYL----LPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 304 RNLNPEWNEEF---GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDIT 353
++LNPEWN+ + ++ + LE+ V+D+++ +D +G +I L +
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS 125
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 262 LNVKVLRAMKL--------KKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEE 313
L V+V+ A L ++D+ S+PYVK+ L D+ SK+T VK + P + E
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDM-AHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEER 86
Query: 314 FGLVVKDPEYQ--ALELQVYDWEKVGHHDKMGMNVIPLKDI 352
+ + E Q L L V D++K H +G +PL ++
Sbjct: 87 YTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF 314
++ ++N+K R + + + SDPY+K+ + +K KT V + L+P ++E F
Sbjct: 19 FERKAFVVNIKEARGLPAMDEQSM-TSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETF 77
Query: 315 ---GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPR 358
G+ + AL + +++ D +G +IPL I E +
Sbjct: 78 TFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 280 ASDPYVKLKLTDDKLPS--KKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQV 330
SDPYV++ L DK S +KT V + LNP +++ F V PE Q L V
Sbjct: 43 GSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDV 95
>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C
Epsilon
Length = 136
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 260 GILNVKVLRAMKLKK-----KDLIGAS------DPYVKLKLTDDKLPSKKTTVKHRNLNP 308
G+L +K+ A+ LK +D +G DPY+ L + D ++ +T K + +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSP 63
Query: 309 EWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
W++EF V + +EL V+ +G+ D + I +++ R
Sbjct: 64 AWHDEF--VTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF 113
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNE--EFGLV 317
G+L V V A + K G DP V + D+K +KK LNP WNE EF L
Sbjct: 7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVD---NELNPVWNEILEFDLR 62
Query: 318 VKDPEYQA-LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
++ + L + V D+E +G + +G + LKD+T ++ R + L+
Sbjct: 63 GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLI 111
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 262 LNVKVLRAMKLKK--KDLIGASDPYVKLKLTD---DKLPSKKTTVKHRNLNPEWNEEFGL 316
L V+++ +L K K+ DP V +++ D + + + NP W+ EF
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIP 348
V P+ + V D++ +D +G + IP
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 588
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 262 LNVKVLRAMKLKK--KDLIGASDPYVKLKLTD---DKLPSKKTTVKHRNLNPEWNEEFGL 316
L V+++ +L K K+ DP V +++ D + + + NP W+ EF
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIP 348
V P+ + V D++ +D +G + IP
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP 590
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 415 EGGGLLVVILHEAQDVEGKYHTNPSA--RILFRGEEKKTKRIKKNRDPRWEEEFQF 468
G LVV A+ + G Y T A ++ F G+E +T + N +PRW ++ F
Sbjct: 391 RGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF 446
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 266 VLRAMKLKKKDLI---GAS-DPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEF---GL 316
L M + KDL+ GA +PYVK L D K +KT + + NP +NE G
Sbjct: 21 TLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDI 352
+ + L+L V E + + +G +PLKD
Sbjct: 81 SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 395 EIPPDMDGPNSVQKAPEGTPEGGGL-LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKR 453
EIPP++ ++Q PE T + G+ V A+++E K H S R++ R + +R
Sbjct: 118 EIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPER 177
Query: 454 IKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
P E QF + + P LH+E
Sbjct: 178 --PGPQPTAETTRQFLMSDKP----LHLEA 201
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 395 EIPPDMDGPNSVQKAPEGTPEGGGL-LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKR 453
EIPP++ ++Q PE T + G+ V A+++E K H S R++ R + +R
Sbjct: 118 EIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPER 177
Query: 454 IKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
P E QF + + P LH+E
Sbjct: 178 --PGPQPTAETTRQFLMSDKP----LHLEA 201
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 395 EIPPDMDGPNSVQKAPEGTPEGGGL-LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKR 453
EIPP++ ++Q PE T + G+ V A+++E K H S R++ R + +R
Sbjct: 118 EIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPER 177
Query: 454 IKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
P E QF + + P LH+E
Sbjct: 178 --PGPQPTAETTRQFLMSDKP----LHLEA 201
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 395 EIPPDMDGPNSVQKAPEGTPEGGGL-LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKR 453
EIPP++ ++Q PE T + G+ V A+++E K H S R++ R + +R
Sbjct: 118 EIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPER 177
Query: 454 IKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
P E QF + + P LH+E
Sbjct: 178 --PGPQPTAETTRQFLMSDKP----LHLEA 201
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 964
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 69 DRVDWLNKFIETMWPFLDKAICKTVRETVKPI 100
D +DWL ++++T WP LD C +V E + +
Sbjct: 698 DVLDWLEEWLQTEWPELD-VTCTSVTEQLATV 728
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 69 DRVDWLNKFIETMWPFLDKAICKTVRETVKPI 100
D +DWL ++++T WP LD C +V E + +
Sbjct: 699 DVLDWLEEWLQTEWPDLD-VTCTSVTEQLATV 729
>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 69 DRVDWLNKFIETMWPFLDKAICKTVRETVKPI 100
D +DWL ++++T WP LD C +V E + +
Sbjct: 699 DVLDWLEEWLQTEWPDLD-VTCTSVTEQLATV 729
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
Length = 131
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 263 NVKVLRAMKLKKKDLIGAS---DPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
V L + +KK GA + YV LK+ + K TT+ R P W ++F +
Sbjct: 2 GVMSLLCVGVKKAKFDGAQEKFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 57
Query: 320 DPEYQALELQVYDWEKVGHHDKM-GMNVIPLKDI---TPEEPRE-MTLD 363
+ L L V W K D M G IPL+ I E P E +TLD
Sbjct: 58 RLD---LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 103
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 316 LVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPE 355
L+ D + ++ L WEK G DK+G+ + P KD E
Sbjct: 92 LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAE 131
>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 365
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 436 TNPSARILFRGEEKKTKRIKKNRDPRWEEEF-----------QFTLEEPPTDDKLHVEVI 484
TN +A I GE+ K + + ++R RW++E +F + + D + E++
Sbjct: 45 TNLAASIF--GEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIM 102
Query: 485 STSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI--DSKNGR 528
T R LL L + L D ++N R + ++ + DS+ G+
Sbjct: 103 VTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGQ 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,814,139
Number of Sequences: 62578
Number of extensions: 757806
Number of successful extensions: 1747
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 105
length of query: 538
length of database: 14,973,337
effective HSP length: 103
effective length of query: 435
effective length of database: 8,527,803
effective search space: 3709594305
effective search space used: 3709594305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)