Query 046405
Match_columns 538
No_of_seqs 414 out of 2634
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 8.8E-68 1.9E-72 564.4 36.1 495 2-538 165-694 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 3.7E-30 7.9E-35 264.8 21.8 235 255-524 162-407 (421)
3 KOG2059 Ras GTPase-activating 99.9 5.4E-23 1.2E-27 210.7 16.4 242 260-536 5-276 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 8.6E-22 1.9E-26 167.8 13.9 119 259-388 1-121 (121)
5 cd08682 C2_Rab11-FIP_classI C2 99.8 2.6E-20 5.5E-25 161.6 13.2 119 262-387 1-126 (126)
6 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.7E-20 1E-24 158.8 14.3 121 261-390 1-121 (121)
7 cd04016 C2_Tollip C2 domain pr 99.8 5.3E-20 1.1E-24 156.8 14.2 112 418-535 2-121 (121)
8 cd08681 C2_fungal_Inn1p-like C 99.8 3.5E-20 7.6E-25 158.9 12.9 117 260-388 1-118 (118)
9 cd08376 C2B_MCTP_PRT C2 domain 99.8 9.4E-20 2E-24 155.7 14.2 115 261-389 1-115 (116)
10 cd08375 C2_Intersectin C2 doma 99.8 1.3E-19 2.9E-24 158.6 14.4 122 254-388 9-135 (136)
11 cd04036 C2_cPLA2 C2 domain pre 99.8 1.9E-19 4.1E-24 154.5 14.9 116 262-388 2-117 (119)
12 cd08395 C2C_Munc13 C2 domain t 99.8 1.6E-19 3.5E-24 153.4 13.5 107 261-368 1-114 (120)
13 cd08677 C2A_Synaptotagmin-13 C 99.8 9.7E-20 2.1E-24 152.5 11.5 113 380-521 1-118 (118)
14 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.8E-19 4E-24 154.5 13.2 116 261-384 1-125 (126)
15 cd08677 C2A_Synaptotagmin-13 C 99.8 7.3E-20 1.6E-24 153.3 10.2 105 256-363 10-117 (118)
16 COG5038 Ca2+-dependent lipid-b 99.8 4.2E-18 9E-23 184.4 26.4 311 219-537 655-1162(1227)
17 KOG1030 Predicted Ca2+-depende 99.8 7.3E-20 1.6E-24 158.8 10.2 100 257-360 3-102 (168)
18 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.1E-19 6.8E-24 155.0 12.9 121 261-389 1-126 (127)
19 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.6E-19 1E-23 157.5 13.9 128 261-391 1-134 (150)
20 cd08391 C2A_C2C_Synaptotagmin_ 99.8 6.8E-19 1.5E-23 151.6 13.8 112 418-535 1-121 (121)
21 cd04024 C2A_Synaptotagmin-like 99.8 6.1E-19 1.3E-23 153.5 13.4 123 260-388 1-128 (128)
22 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 7.5E-19 1.6E-23 151.7 13.6 122 261-386 1-122 (123)
23 cd04044 C2A_Tricalbin-like C2 99.8 9.3E-19 2E-23 151.4 13.7 122 259-390 1-124 (124)
24 cd08381 C2B_PI3K_class_II C2 d 99.8 5.1E-19 1.1E-23 152.1 11.8 105 259-364 12-121 (122)
25 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.2E-18 2.5E-23 149.6 14.0 119 262-388 2-121 (121)
26 cd04028 C2B_RIM1alpha C2 domai 99.8 1.2E-18 2.6E-23 153.0 14.1 110 259-369 28-141 (146)
27 cd08678 C2_C21orf25-like C2 do 99.8 1.9E-18 4E-23 149.8 14.7 122 262-391 1-122 (126)
28 cd08682 C2_Rab11-FIP_classI C2 99.8 9.7E-19 2.1E-23 151.7 12.9 111 420-534 1-126 (126)
29 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.6E-18 5.7E-23 148.7 15.3 123 259-391 3-125 (126)
30 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.2E-18 2.6E-23 150.1 12.9 115 260-388 1-121 (121)
31 cd04046 C2_Calpain C2 domain p 99.8 3.7E-18 8E-23 147.9 15.2 123 258-390 1-123 (126)
32 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.6E-18 3.4E-23 149.7 12.8 115 379-522 1-125 (125)
33 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.9E-18 6.3E-23 147.1 13.7 115 261-389 1-120 (121)
34 cd08381 C2B_PI3K_class_II C2 d 99.8 2.1E-18 4.5E-23 148.3 12.8 112 379-521 1-121 (122)
35 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.6E-18 3.5E-23 149.8 12.1 115 379-522 1-125 (125)
36 cd08681 C2_fungal_Inn1p-like C 99.8 2.2E-18 4.7E-23 147.7 12.8 112 418-535 1-118 (118)
37 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 3.4E-18 7.3E-23 149.8 14.3 123 261-389 1-133 (133)
38 cd08400 C2_Ras_p21A1 C2 domain 99.8 5.8E-18 1.3E-22 146.5 15.3 115 417-537 3-124 (126)
39 cd04015 C2_plant_PLD C2 domain 99.8 5.3E-18 1.1E-22 152.3 15.4 123 259-389 6-158 (158)
40 cd04028 C2B_RIM1alpha C2 domai 99.8 3.8E-18 8.3E-23 149.8 14.1 116 376-524 14-139 (146)
41 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.1E-18 4.5E-23 149.1 11.9 108 257-364 12-124 (125)
42 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.5E-18 1.4E-22 144.3 14.1 112 419-536 1-115 (116)
43 cd08377 C2C_MCTP_PRT C2 domain 99.8 7.6E-18 1.6E-22 144.6 14.3 118 260-388 1-118 (119)
44 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.1E-18 6.7E-23 147.9 11.8 109 256-364 11-124 (125)
45 cd04024 C2A_Synaptotagmin-like 99.8 6.2E-18 1.4E-22 147.1 13.8 113 418-535 1-128 (128)
46 cd04042 C2A_MCTP_PRT C2 domain 99.8 9.8E-18 2.1E-22 144.3 14.7 112 420-537 2-121 (121)
47 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.6E-18 7.9E-23 147.7 12.0 109 256-364 12-122 (124)
48 cd04041 C2A_fungal C2 domain f 99.8 2.8E-18 6.1E-23 145.2 10.8 95 260-354 1-99 (111)
49 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.6E-18 1.4E-22 144.9 12.9 111 419-531 1-125 (126)
50 cd04010 C2B_RasA3 C2 domain se 99.8 7.4E-18 1.6E-22 148.9 13.5 124 261-386 1-147 (148)
51 cd08378 C2B_MCTP_PRT_plant C2 99.8 7E-18 1.5E-22 144.8 12.9 111 419-536 1-120 (121)
52 cd04019 C2C_MCTP_PRT_plant C2 99.8 8.7E-18 1.9E-22 149.3 13.8 114 419-537 1-133 (150)
53 cd08385 C2A_Synaptotagmin-1-5- 99.8 7.6E-18 1.6E-22 145.7 12.6 109 256-364 12-122 (124)
54 cd08392 C2A_SLP-3 C2 domain fi 99.8 8.3E-18 1.8E-22 145.5 12.7 115 379-522 1-128 (128)
55 cd08375 C2_Intersectin C2 doma 99.8 2.3E-17 4.9E-22 144.4 15.4 115 416-535 13-135 (136)
56 cd08685 C2_RGS-like C2 domain 99.8 8.6E-18 1.9E-22 143.6 11.8 102 417-521 11-119 (119)
57 cd04014 C2_PKC_epsilon C2 doma 99.8 2E-17 4.4E-22 144.6 14.3 116 259-390 3-130 (132)
58 cd04043 C2_Munc13_fungal C2 do 99.7 2.7E-17 5.8E-22 142.7 14.7 119 261-391 2-123 (126)
59 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.2E-17 2.6E-22 145.0 12.5 114 419-536 1-126 (127)
60 cd08388 C2A_Synaptotagmin-4-11 99.7 1.2E-17 2.6E-22 144.8 12.3 109 256-364 12-126 (128)
61 cd04036 C2_cPLA2 C2 domain pre 99.7 1.9E-17 4.2E-22 142.0 13.4 111 419-535 1-117 (119)
62 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.2E-17 4.7E-22 142.0 13.6 118 262-387 2-120 (121)
63 cd04017 C2D_Ferlin C2 domain f 99.7 3.5E-17 7.5E-22 143.6 15.0 120 261-391 2-134 (135)
64 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.7E-17 3.7E-22 143.5 12.5 115 379-522 2-123 (124)
65 cd04039 C2_PSD C2 domain prese 99.7 9.4E-18 2E-22 140.7 10.5 94 260-356 1-99 (108)
66 cd08678 C2_C21orf25-like C2 do 99.7 3.3E-17 7.2E-22 142.0 14.3 113 420-538 1-122 (126)
67 cd08680 C2_Kibra C2 domain fou 99.7 1E-17 2.2E-22 143.6 10.9 108 256-363 10-123 (124)
68 cd04050 C2B_Synaptotagmin-like 99.7 2.5E-17 5.4E-22 137.9 12.3 99 419-525 1-104 (105)
69 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.6E-17 3.4E-22 143.7 11.3 109 256-364 11-127 (128)
70 cd04031 C2A_RIM1alpha C2 domai 99.7 2.9E-17 6.3E-22 142.3 12.9 114 379-522 2-125 (125)
71 cd04032 C2_Perforin C2 domain 99.7 2.8E-17 6.1E-22 141.1 12.3 107 245-355 12-120 (127)
72 cd08382 C2_Smurf-like C2 domai 99.7 4.8E-17 1E-21 140.3 13.7 118 262-386 2-122 (123)
73 cd08394 C2A_Munc13 C2 domain f 99.7 3.3E-17 7.1E-22 138.6 12.3 105 418-530 2-111 (127)
74 cd08373 C2A_Ferlin C2 domain f 99.7 5.5E-17 1.2E-21 140.9 14.1 117 266-393 2-120 (127)
75 cd04030 C2C_KIAA1228 C2 domain 99.7 2.9E-17 6.4E-22 142.7 12.4 118 378-522 1-127 (127)
76 cd08385 C2A_Synaptotagmin-1-5- 99.7 3.5E-17 7.5E-22 141.5 12.5 115 379-522 2-123 (124)
77 cd04014 C2_PKC_epsilon C2 doma 99.7 9.7E-17 2.1E-21 140.3 15.3 113 416-537 2-130 (132)
78 cd08386 C2A_Synaptotagmin-7 C2 99.7 4.2E-17 9E-22 141.3 12.8 109 256-364 12-123 (125)
79 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 5.6E-17 1.2E-21 139.2 13.4 110 420-535 2-121 (121)
80 cd08685 C2_RGS-like C2 domain 99.7 1.8E-17 3.9E-22 141.6 9.9 106 258-364 10-119 (119)
81 cd04050 C2B_Synaptotagmin-like 99.7 3E-17 6.6E-22 137.4 10.8 99 261-365 1-101 (105)
82 cd08680 C2_Kibra C2 domain fou 99.7 3.6E-17 7.7E-22 140.3 11.4 112 381-521 2-124 (124)
83 cd04052 C2B_Tricalbin-like C2 99.7 5E-17 1.1E-21 137.5 12.1 99 434-538 11-111 (111)
84 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 6.8E-17 1.5E-21 145.6 13.6 128 379-523 1-138 (162)
85 cd08389 C2A_Synaptotagmin-14_1 99.7 3.7E-17 7.9E-22 141.0 11.4 109 255-364 11-122 (124)
86 cd08521 C2A_SLP C2 domain firs 99.7 4.8E-17 1E-21 140.5 11.4 109 256-364 10-123 (123)
87 cd04030 C2C_KIAA1228 C2 domain 99.7 6.7E-17 1.4E-21 140.4 12.4 109 256-364 12-126 (127)
88 cd04027 C2B_Munc13 C2 domain s 99.7 1.2E-16 2.5E-21 138.7 13.7 115 261-386 2-127 (127)
89 cd08676 C2A_Munc13-like C2 dom 99.7 5E-17 1.1E-21 144.1 11.2 106 254-364 22-153 (153)
90 cd08395 C2C_Munc13 C2 domain t 99.7 9.7E-17 2.1E-21 136.4 12.0 102 419-524 1-113 (120)
91 cd04031 C2A_RIM1alpha C2 domai 99.7 9.2E-17 2E-21 139.1 12.1 108 256-364 12-124 (125)
92 cd04044 C2A_Tricalbin-like C2 99.7 1.5E-16 3.3E-21 137.6 13.4 114 418-537 2-124 (124)
93 cd08373 C2A_Ferlin C2 domain f 99.7 2.1E-16 4.6E-21 137.2 14.2 111 424-538 2-118 (127)
94 cd08390 C2A_Synaptotagmin-15-1 99.7 1.4E-16 3E-21 137.6 12.8 110 255-364 9-121 (123)
95 cd04015 C2_plant_PLD C2 domain 99.7 2.2E-16 4.7E-21 141.9 14.4 113 417-536 6-158 (158)
96 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2E-16 4.4E-21 136.5 13.7 110 419-533 1-122 (123)
97 cd08407 C2B_Synaptotagmin-13 C 99.7 3E-17 6.5E-22 143.1 8.3 115 379-524 1-126 (138)
98 cd08521 C2A_SLP C2 domain firs 99.7 1.6E-16 3.4E-21 137.3 12.4 113 380-521 1-123 (123)
99 cd08688 C2_KIAA0528-like C2 do 99.7 7.7E-17 1.7E-21 136.1 9.9 101 262-365 1-108 (110)
100 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.9E-16 6.3E-21 136.0 13.6 115 379-522 2-124 (125)
101 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.3E-16 2.7E-21 143.9 11.7 109 256-364 23-136 (162)
102 cd08389 C2A_Synaptotagmin-14_1 99.7 2E-16 4.3E-21 136.5 12.2 114 379-522 2-123 (124)
103 KOG1030 Predicted Ca2+-depende 99.7 1E-16 2.2E-21 139.3 10.3 92 416-513 4-98 (168)
104 cd04049 C2_putative_Elicitor-r 99.7 1.1E-16 2.4E-21 138.4 10.5 103 260-365 1-107 (124)
105 cd04040 C2D_Tricalbin-like C2 99.7 3.6E-16 7.8E-21 133.3 13.5 113 262-383 1-113 (115)
106 cd08394 C2A_Munc13 C2 domain f 99.7 1.7E-16 3.7E-21 134.2 11.3 101 259-368 1-103 (127)
107 cd04051 C2_SRC2_like C2 domain 99.7 1.4E-16 3E-21 138.0 11.0 115 261-384 1-125 (125)
108 cd08690 C2_Freud-1 C2 domain f 99.7 7.3E-16 1.6E-20 136.3 15.6 124 260-390 4-138 (155)
109 cd04039 C2_PSD C2 domain prese 99.7 2E-16 4.4E-21 132.6 11.3 92 418-513 1-99 (108)
110 cd08377 C2C_MCTP_PRT C2 domain 99.7 6E-16 1.3E-20 132.8 14.5 110 418-535 1-118 (119)
111 cd08692 C2B_Tac2-N C2 domain s 99.7 1.2E-16 2.6E-21 137.2 10.0 120 380-529 1-129 (135)
112 cd08406 C2B_Synaptotagmin-12 C 99.7 7E-17 1.5E-21 140.9 8.5 115 380-525 2-125 (136)
113 cd04045 C2C_Tricalbin-like C2 99.7 2.8E-16 6.1E-21 134.6 12.0 103 260-366 1-103 (120)
114 cd08388 C2A_Synaptotagmin-4-11 99.7 3.9E-16 8.5E-21 135.3 13.0 115 379-522 2-127 (128)
115 cd04010 C2B_RasA3 C2 domain se 99.7 1.7E-16 3.7E-21 140.2 10.9 102 419-524 1-123 (148)
116 cd08407 C2B_Synaptotagmin-13 C 99.7 5.7E-17 1.2E-21 141.4 7.1 107 257-365 12-124 (138)
117 cd04018 C2C_Ferlin C2 domain t 99.7 3.3E-16 7.1E-21 138.7 12.1 107 419-529 1-131 (151)
118 cd08688 C2_KIAA0528-like C2 do 99.7 2.6E-16 5.6E-21 132.9 10.9 101 420-524 1-110 (110)
119 cd08691 C2_NEDL1-like C2 domai 99.7 1E-15 2.3E-20 133.4 14.9 118 261-386 2-136 (137)
120 cd04038 C2_ArfGAP C2 domain pr 99.7 2.3E-16 5E-21 139.0 10.7 93 259-356 1-93 (145)
121 cd08406 C2B_Synaptotagmin-12 C 99.7 1.5E-16 3.3E-21 138.8 9.4 107 257-365 12-122 (136)
122 cd04037 C2E_Ferlin C2 domain f 99.7 2.3E-16 5E-21 136.1 10.4 93 261-354 1-93 (124)
123 cd04026 C2_PKC_alpha_gamma C2 99.7 6.1E-16 1.3E-20 135.1 13.2 120 379-530 1-128 (131)
124 cd04018 C2C_Ferlin C2 domain t 99.7 3.3E-16 7.1E-21 138.7 11.3 93 261-356 1-108 (151)
125 cd08390 C2A_Synaptotagmin-15-1 99.7 6.6E-16 1.4E-20 133.4 12.3 114 380-522 1-122 (123)
126 cd08409 C2B_Synaptotagmin-15 C 99.7 1.9E-16 4.1E-21 139.0 9.0 120 379-527 1-128 (137)
127 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.4E-16 5.3E-21 138.0 9.5 109 256-366 9-121 (133)
128 cd04013 C2_SynGAP_like C2 doma 99.7 1.4E-15 3.1E-20 133.1 14.2 118 417-538 10-141 (146)
129 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.2E-15 2.5E-20 131.2 13.5 109 420-534 2-120 (121)
130 cd08675 C2B_RasGAP C2 domain s 99.7 5.2E-16 1.1E-20 136.1 11.4 108 262-370 1-124 (137)
131 cd04009 C2B_Munc13-like C2 dom 99.7 6E-16 1.3E-20 135.3 11.7 99 257-355 13-119 (133)
132 PLN03200 cellulose synthase-in 99.7 2.7E-16 5.9E-21 183.1 12.2 117 416-537 1978-2101(2102)
133 PLN03008 Phospholipase D delta 99.7 7.2E-16 1.6E-20 165.1 14.3 129 259-395 13-183 (868)
134 cd04011 C2B_Ferlin C2 domain s 99.7 5.8E-16 1.3E-20 131.0 11.1 102 417-523 3-110 (111)
135 cd08405 C2B_Synaptotagmin-7 C2 99.7 2.7E-16 5.9E-21 138.2 8.6 108 256-365 11-122 (136)
136 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.4E-15 2.9E-20 133.3 12.8 111 419-535 1-132 (133)
137 cd08402 C2B_Synaptotagmin-1 C2 99.6 4.7E-16 1E-20 136.7 9.3 121 379-530 1-130 (136)
138 cd04011 C2B_Ferlin C2 domain s 99.6 1.1E-15 2.4E-20 129.3 11.2 98 260-364 4-108 (111)
139 cd08692 C2B_Tac2-N C2 domain s 99.6 7E-16 1.5E-20 132.5 9.6 107 257-364 11-121 (135)
140 cd04017 C2D_Ferlin C2 domain f 99.6 3.2E-15 6.9E-20 131.1 14.0 116 419-538 2-134 (135)
141 cd04021 C2_E3_ubiquitin_ligase 99.6 3.1E-15 6.7E-20 129.3 13.5 118 260-386 2-124 (125)
142 cd04046 C2_Calpain C2 domain p 99.6 5.6E-15 1.2E-19 127.9 15.1 112 417-537 2-123 (126)
143 cd08404 C2B_Synaptotagmin-4 C2 99.6 8E-16 1.7E-20 135.2 9.9 115 379-524 1-124 (136)
144 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.9E-16 8.4E-21 137.2 7.5 106 257-364 12-121 (136)
145 cd04038 C2_ArfGAP C2 domain pr 99.6 3.6E-15 7.8E-20 131.4 13.4 90 418-513 2-93 (145)
146 cd08690 C2_Freud-1 C2 domain f 99.6 6.3E-15 1.4E-19 130.4 14.4 115 421-538 5-139 (155)
147 cd08403 C2B_Synaptotagmin-3-5- 99.6 6.5E-16 1.4E-20 135.4 8.0 107 257-365 11-121 (134)
148 cd04052 C2B_Tricalbin-like C2 99.6 1.5E-15 3.4E-20 128.3 10.1 102 277-391 9-111 (111)
149 cd08405 C2B_Synaptotagmin-7 C2 99.6 6.7E-16 1.4E-20 135.7 8.0 116 379-525 1-125 (136)
150 cd04048 C2A_Copine C2 domain f 99.6 3E-15 6.6E-20 128.5 11.7 99 266-364 6-112 (120)
151 cd00276 C2B_Synaptotagmin C2 d 99.6 9.3E-16 2E-20 134.5 8.7 120 380-530 1-129 (134)
152 cd08382 C2_Smurf-like C2 domai 99.6 4.4E-15 9.6E-20 128.0 12.6 107 420-533 2-122 (123)
153 cd04045 C2C_Tricalbin-like C2 99.6 6E-15 1.3E-19 126.4 13.3 106 418-530 1-110 (120)
154 cd08408 C2B_Synaptotagmin-14_1 99.6 2.2E-15 4.9E-20 132.1 10.8 110 255-365 10-124 (138)
155 cd04013 C2_SynGAP_like C2 doma 99.6 6.6E-15 1.4E-19 128.9 13.5 126 258-391 9-141 (146)
156 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.3E-15 2.7E-20 134.0 8.9 108 256-365 11-122 (136)
157 cd04041 C2A_fungal C2 domain f 99.6 3E-15 6.4E-20 126.6 10.8 99 418-523 1-108 (111)
158 cd04043 C2_Munc13_fungal C2 do 99.6 9.9E-15 2.1E-19 126.5 14.3 110 419-535 2-120 (126)
159 cd04035 C2A_Rabphilin_Doc2 C2 99.6 4.3E-15 9.3E-20 128.2 11.9 107 256-363 11-122 (123)
160 cd08410 C2B_Synaptotagmin-17 C 99.6 1.6E-15 3.5E-20 132.9 8.9 117 380-526 1-126 (135)
161 cd04027 C2B_Munc13 C2 domain s 99.6 8.3E-15 1.8E-19 127.1 13.2 112 418-533 1-127 (127)
162 cd08410 C2B_Synaptotagmin-17 C 99.6 3.6E-15 7.7E-20 130.7 10.9 108 257-365 11-122 (135)
163 cd04009 C2B_Munc13-like C2 dom 99.6 5.4E-15 1.2E-19 129.3 12.0 104 379-511 2-118 (133)
164 cd08403 C2B_Synaptotagmin-3-5- 99.6 2.3E-15 4.9E-20 132.0 9.5 119 380-529 1-128 (134)
165 cd08409 C2B_Synaptotagmin-15 C 99.6 1.4E-15 3E-20 133.5 7.8 109 257-366 12-124 (137)
166 cd08408 C2B_Synaptotagmin-14_1 99.6 1.8E-15 4E-20 132.6 8.5 119 380-528 2-130 (138)
167 cd08686 C2_ABR C2 domain in th 99.6 1E-14 2.2E-19 121.8 12.3 95 262-363 1-106 (118)
168 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.9E-15 4.1E-20 132.3 8.3 104 417-526 12-124 (133)
169 cd04032 C2_Perforin C2 domain 99.6 5.4E-15 1.2E-19 127.0 10.7 93 416-512 26-120 (127)
170 cd04049 C2_putative_Elicitor-r 99.6 1.5E-14 3.2E-19 125.0 13.6 104 418-525 1-110 (124)
171 cd04026 C2_PKC_alpha_gamma C2 99.6 8.9E-15 1.9E-19 127.7 11.2 106 260-366 13-121 (131)
172 KOG0696 Serine/threonine prote 99.6 7.3E-16 1.6E-20 150.6 4.4 107 258-365 178-287 (683)
173 cd08383 C2A_RasGAP C2 domain ( 99.6 2.2E-14 4.8E-19 122.6 12.7 109 420-535 2-117 (117)
174 cd00276 C2B_Synaptotagmin C2 d 99.6 3.1E-15 6.8E-20 131.2 7.4 107 258-366 12-122 (134)
175 cd08383 C2A_RasGAP C2 domain ( 99.6 3.5E-14 7.7E-19 121.3 13.6 114 262-388 2-117 (117)
176 cd00275 C2_PLC_like C2 domain 99.6 6E-14 1.3E-18 121.9 14.7 119 261-388 3-127 (128)
177 cd04051 C2_SRC2_like C2 domain 99.6 1.6E-14 3.5E-19 125.0 11.0 109 419-531 1-125 (125)
178 cd04047 C2B_Copine C2 domain s 99.6 1.5E-14 3.3E-19 122.2 10.3 96 264-360 4-106 (110)
179 cd08675 C2B_RasGAP C2 domain s 99.5 3.3E-14 7.1E-19 124.7 11.0 102 420-525 1-122 (137)
180 PLN03008 Phospholipase D delta 99.5 4.9E-14 1.1E-18 151.1 14.0 98 434-538 75-179 (868)
181 cd04035 C2A_Rabphilin_Doc2 C2 99.5 7E-14 1.5E-18 120.6 12.1 106 379-514 1-116 (123)
182 cd04021 C2_E3_ubiquitin_ligase 99.5 1.1E-13 2.3E-18 119.7 13.1 108 419-533 3-124 (125)
183 KOG1013 Synaptic vesicle prote 99.5 5.9E-15 1.3E-19 140.1 5.5 222 257-507 90-327 (362)
184 cd04040 C2D_Tricalbin-like C2 99.5 8.3E-14 1.8E-18 118.7 11.7 100 420-524 1-104 (115)
185 cd08676 C2A_Munc13-like C2 dom 99.5 7.9E-14 1.7E-18 123.6 11.6 97 415-521 25-153 (153)
186 cd08691 C2_NEDL1-like C2 domai 99.5 2.3E-13 5.1E-18 118.6 13.7 111 419-533 2-136 (137)
187 KOG0696 Serine/threonine prote 99.5 1.5E-14 3.3E-19 141.5 6.6 121 376-528 165-293 (683)
188 PF00168 C2: C2 domain; Inter 99.5 7E-14 1.5E-18 111.8 9.0 85 262-346 1-85 (85)
189 PLN03200 cellulose synthase-in 99.5 5.6E-14 1.2E-18 164.1 11.7 123 255-390 1975-2101(2102)
190 cd08686 C2_ABR C2 domain in th 99.5 5.4E-13 1.2E-17 111.5 12.6 98 420-522 1-108 (118)
191 KOG1028 Ca2+-dependent phospho 99.5 6.4E-13 1.4E-17 137.3 14.7 134 376-538 150-296 (421)
192 cd04037 C2E_Ferlin C2 domain f 99.5 2.7E-13 5.8E-18 117.0 9.8 88 419-511 1-93 (124)
193 cd04048 C2A_Copine C2 domain f 99.4 6.7E-13 1.5E-17 113.9 10.6 99 424-523 6-114 (120)
194 cd00275 C2_PLC_like C2 domain 99.4 3.2E-12 7E-17 111.0 13.8 108 419-535 3-127 (128)
195 KOG1011 Neurotransmitter relea 99.4 6.1E-13 1.3E-17 135.4 8.7 122 257-389 292-424 (1283)
196 cd08374 C2F_Ferlin C2 domain s 99.3 8.4E-12 1.8E-16 107.3 11.4 95 262-356 2-125 (133)
197 KOG1326 Membrane-associated pr 99.3 3.5E-12 7.6E-17 136.5 10.4 93 259-352 612-704 (1105)
198 smart00239 C2 Protein kinase C 99.3 1.3E-11 2.9E-16 101.5 10.7 97 261-357 1-97 (101)
199 cd04047 C2B_Copine C2 domain s 99.3 1.7E-11 3.7E-16 103.5 10.3 92 423-521 5-108 (110)
200 cd00030 C2 C2 domain. The C2 d 99.3 4.3E-11 9.3E-16 98.1 10.6 100 262-363 1-101 (102)
201 PF00168 C2: C2 domain; Inter 99.2 1.9E-11 4.2E-16 97.5 7.6 79 420-503 1-85 (85)
202 KOG1011 Neurotransmitter relea 99.2 1.6E-11 3.4E-16 125.3 8.0 120 411-534 288-422 (1283)
203 PLN02223 phosphoinositide phos 99.2 3.4E-10 7.4E-15 117.3 15.1 98 259-356 408-512 (537)
204 PLN02270 phospholipase D alpha 99.2 1.9E-10 4E-15 124.0 13.6 115 417-538 7-150 (808)
205 PLN02270 phospholipase D alpha 99.2 4E-10 8.8E-15 121.4 15.5 128 259-394 7-153 (808)
206 PF10296 DUF2404: Putative int 99.2 2.1E-10 4.5E-15 92.7 9.5 85 75-160 1-89 (91)
207 KOG1328 Synaptic vesicle prote 99.1 1.5E-11 3.2E-16 127.2 2.8 135 254-394 108-306 (1103)
208 cd08374 C2F_Ferlin C2 domain s 99.1 2.7E-10 5.8E-15 98.0 9.0 90 420-513 2-125 (133)
209 cd00030 C2 C2 domain. The C2 d 99.1 5.7E-10 1.2E-14 91.4 10.7 97 420-521 1-102 (102)
210 PLN02952 phosphoinositide phos 99.1 1.8E-09 3.9E-14 114.4 14.5 104 259-365 469-580 (599)
211 smart00239 C2 Protein kinase C 99.1 1.4E-09 2.9E-14 89.4 10.5 89 420-513 2-96 (101)
212 PLN02230 phosphoinositide phos 99.0 3.7E-09 8.1E-14 111.9 14.0 98 259-356 468-573 (598)
213 KOG2059 Ras GTPase-activating 99.0 1.1E-09 2.3E-14 113.9 9.6 113 418-537 5-126 (800)
214 PLN02222 phosphoinositide phos 98.9 1.3E-08 2.8E-13 107.7 14.4 98 259-356 451-556 (581)
215 PLN02228 Phosphoinositide phos 98.9 1.7E-08 3.6E-13 106.6 14.7 124 260-391 431-563 (567)
216 KOG0169 Phosphoinositide-speci 98.9 7E-09 1.5E-13 109.7 11.8 121 261-389 617-744 (746)
217 PLN02223 phosphoinositide phos 98.9 2.3E-08 5E-13 103.9 14.0 112 416-535 407-536 (537)
218 cd08689 C2_fungal_Pkc1p C2 dom 98.9 6.2E-09 1.3E-13 84.0 6.8 86 262-355 1-89 (109)
219 PLN02952 phosphoinositide phos 98.8 1.1E-07 2.5E-12 101.0 14.3 100 417-524 469-582 (599)
220 KOG1328 Synaptic vesicle prote 98.7 3.3E-09 7.2E-14 110.2 2.4 97 258-354 945-1049(1103)
221 KOG1326 Membrane-associated pr 98.7 9.6E-09 2.1E-13 110.7 4.3 230 259-505 205-454 (1105)
222 KOG1327 Copine [Signal transdu 98.7 2.1E-07 4.6E-12 96.0 13.4 178 297-511 43-236 (529)
223 KOG1031 Predicted Ca2+-depende 98.7 3.9E-08 8.4E-13 99.9 7.8 119 260-388 3-135 (1169)
224 KOG1264 Phospholipase C [Lipid 98.7 7.6E-08 1.6E-12 101.4 9.7 126 260-394 1065-1194(1267)
225 cd08689 C2_fungal_Pkc1p C2 dom 98.7 9.4E-08 2E-12 77.3 8.0 82 420-512 1-89 (109)
226 KOG0905 Phosphoinositide 3-kin 98.6 4.5E-08 9.7E-13 106.8 6.8 118 376-524 1509-1636(1639)
227 PLN02222 phosphoinositide phos 98.6 4.4E-07 9.4E-12 96.3 14.0 111 417-535 451-580 (581)
228 PLN02352 phospholipase D epsil 98.6 4.7E-07 1E-11 97.9 14.1 121 258-394 8-135 (758)
229 PLN02230 phosphoinositide phos 98.6 4.4E-07 9.6E-12 96.4 13.5 111 417-535 468-597 (598)
230 PLN02352 phospholipase D epsil 98.6 3E-07 6.5E-12 99.4 12.0 110 416-538 8-132 (758)
231 KOG1031 Predicted Ca2+-depende 98.5 2.6E-07 5.7E-12 94.0 9.2 114 417-534 2-134 (1169)
232 PLN02228 Phosphoinositide phos 98.5 2.3E-06 5E-11 90.6 14.1 113 417-537 430-562 (567)
233 KOG0169 Phosphoinositide-speci 98.4 2.3E-06 5E-11 91.1 11.8 111 419-537 617-745 (746)
234 cd08683 C2_C2cd3 C2 domain fou 98.4 5E-07 1.1E-11 75.3 5.3 102 420-521 1-143 (143)
235 KOG0905 Phosphoinositide 3-kin 98.3 5.1E-07 1.1E-11 98.8 4.1 106 259-364 1523-1633(1639)
236 KOG1264 Phospholipase C [Lipid 98.2 6.9E-06 1.5E-10 87.0 11.2 99 418-524 1065-1172(1267)
237 KOG1013 Synaptic vesicle prote 98.1 4.4E-06 9.4E-11 80.4 5.6 96 254-349 227-326 (362)
238 cd08684 C2A_Tac2-N C2 domain f 98.0 4.7E-06 1E-10 64.5 3.4 91 263-355 2-95 (103)
239 PF12416 DUF3668: Cep120 prote 98.0 0.0015 3.2E-08 65.4 21.7 231 262-511 2-295 (340)
240 KOG3532 Predicted protein kina 97.8 9.8E-05 2.1E-09 77.1 9.2 225 58-291 81-358 (1051)
241 KOG1327 Copine [Signal transdu 97.8 4.1E-05 8.8E-10 79.4 6.2 88 266-354 142-236 (529)
242 PLN02964 phosphatidylserine de 97.7 4.1E-05 9E-10 82.6 5.5 91 255-355 49-140 (644)
243 KOG3837 Uncharacterized conser 97.7 4.1E-05 8.9E-10 75.7 4.8 118 416-536 365-503 (523)
244 cd08684 C2A_Tac2-N C2 domain f 97.6 5.5E-05 1.2E-09 58.7 3.0 93 421-520 2-102 (103)
245 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00016 3.4E-09 60.6 4.6 101 262-363 1-142 (143)
246 PLN02964 phosphatidylserine de 97.4 0.00024 5.1E-09 76.8 6.6 100 416-524 52-154 (644)
247 KOG2060 Rab3 effector RIM1 and 97.0 0.00042 9E-09 68.2 3.2 109 257-366 266-379 (405)
248 KOG2060 Rab3 effector RIM1 and 96.9 0.00063 1.4E-08 67.0 3.3 104 416-524 267-380 (405)
249 PF12416 DUF3668: Cep120 prote 96.9 0.0091 2E-07 59.9 11.2 102 420-524 2-114 (340)
250 cd08398 C2_PI3K_class_I_alpha 96.9 0.026 5.6E-07 50.4 12.9 89 260-352 8-106 (158)
251 KOG3837 Uncharacterized conser 96.8 0.0015 3.2E-08 65.0 4.6 126 257-389 364-503 (523)
252 PF15627 CEP76-C2: CEP76 C2 do 96.7 0.041 8.8E-07 48.5 12.1 120 415-538 6-152 (156)
253 cd08398 C2_PI3K_class_I_alpha 96.6 0.015 3.2E-07 51.9 9.2 90 418-508 8-105 (158)
254 PF10358 NT-C2: N-terminal C2 96.1 0.27 5.8E-06 43.1 14.4 124 258-393 5-139 (143)
255 PF15627 CEP76-C2: CEP76 C2 do 96.1 0.1 2.2E-06 46.0 11.2 128 258-392 7-153 (156)
256 cd08693 C2_PI3K_class_I_beta_d 95.9 0.046 1E-06 49.7 8.7 91 418-508 8-119 (173)
257 cd08693 C2_PI3K_class_I_beta_d 95.8 0.052 1.1E-06 49.4 8.7 91 260-352 8-120 (173)
258 cd08380 C2_PI3K_like C2 domain 95.8 0.052 1.1E-06 48.6 8.5 93 260-353 8-108 (156)
259 KOG1265 Phospholipase C [Lipid 95.4 0.028 6E-07 61.3 6.1 90 259-356 702-798 (1189)
260 cd04012 C2A_PI3K_class_II C2 d 95.0 0.091 2E-06 47.8 7.5 94 259-352 7-119 (171)
261 PF10358 NT-C2: N-terminal C2 94.9 0.47 1E-05 41.5 11.8 115 418-537 7-136 (143)
262 cd08399 C2_PI3K_class_I_gamma 94.9 0.24 5.2E-06 45.1 9.9 73 261-334 11-88 (178)
263 cd08380 C2_PI3K_like C2 domain 94.7 0.15 3.3E-06 45.5 8.1 90 418-509 8-107 (156)
264 cd08687 C2_PKN-like C2 domain 94.5 0.35 7.7E-06 38.2 8.4 84 281-388 9-92 (98)
265 KOG1452 Predicted Rho GTPase-a 94.0 0.14 3E-06 49.5 6.4 118 256-389 47-167 (442)
266 cd08397 C2_PI3K_class_III C2 d 93.9 0.18 3.9E-06 45.2 6.8 74 279-352 28-107 (159)
267 KOG1265 Phospholipase C [Lipid 93.8 0.12 2.5E-06 56.7 6.1 87 416-511 701-796 (1189)
268 cd08397 C2_PI3K_class_III C2 d 93.5 0.27 5.9E-06 44.0 7.2 71 435-509 29-107 (159)
269 cd08399 C2_PI3K_class_I_gamma 92.8 0.79 1.7E-05 41.7 9.1 92 418-509 10-122 (178)
270 PF00792 PI3K_C2: Phosphoinosi 92.7 0.5 1.1E-05 41.5 7.5 70 283-352 4-85 (142)
271 PF15625 CC2D2AN-C2: CC2D2A N- 92.0 1.8 3.8E-05 39.2 10.4 72 280-355 36-109 (168)
272 PF15625 CC2D2AN-C2: CC2D2A N- 91.7 1.9 4.2E-05 38.9 10.3 69 435-510 36-107 (168)
273 cd08687 C2_PKN-like C2 domain 91.6 2.5 5.5E-05 33.6 9.2 83 436-535 9-92 (98)
274 smart00142 PI3K_C2 Phosphoinos 90.9 1.4 3E-05 36.0 7.8 73 262-334 13-91 (100)
275 cd04012 C2A_PI3K_class_II C2 d 90.7 1.2 2.6E-05 40.4 8.0 93 417-509 7-119 (171)
276 KOG1452 Predicted Rho GTPase-a 89.1 0.84 1.8E-05 44.4 5.7 113 415-535 48-166 (442)
277 PF00792 PI3K_C2: Phosphoinosi 89.0 1 2.2E-05 39.4 6.0 56 450-509 23-85 (142)
278 cd08695 C2_Dock-B C2 domains f 88.8 3.7 8.1E-05 37.7 9.5 57 295-351 53-113 (189)
279 PF14429 DOCK-C2: C2 domain in 86.6 3.9 8.4E-05 37.5 8.5 56 296-351 60-120 (184)
280 cd08694 C2_Dock-A C2 domains f 85.9 7.1 0.00015 36.0 9.5 56 295-350 53-114 (196)
281 PTZ00447 apical membrane antig 83.1 8.5 0.00018 38.2 9.2 109 416-533 56-170 (508)
282 smart00142 PI3K_C2 Phosphoinos 81.3 7.6 0.00017 31.7 7.2 68 420-487 13-91 (100)
283 KOG1329 Phospholipase D1 [Lipi 80.2 2.1 4.6E-05 47.7 4.5 97 435-537 137-241 (887)
284 KOG1329 Phospholipase D1 [Lipi 78.4 5.5 0.00012 44.6 6.9 107 281-394 138-245 (887)
285 cd08697 C2_Dock-D C2 domains f 77.8 34 0.00074 31.4 10.9 56 296-351 57-123 (185)
286 PF11618 DUF3250: Protein of u 77.3 11 0.00023 31.3 6.8 93 439-537 2-106 (107)
287 KOG2238 Uncharacterized conser 72.8 1.2 2.6E-05 48.6 0.2 91 69-160 334-428 (795)
288 PF14429 DOCK-C2: C2 domain in 72.7 16 0.00034 33.5 7.6 60 448-508 60-120 (184)
289 cd08679 C2_DOCK180_related C2 66.1 16 0.00034 33.3 6.0 54 297-351 55-115 (178)
290 PF11618 DUF3250: Protein of u 64.7 21 0.00046 29.5 5.9 84 296-388 12-104 (107)
291 KOG4269 Rac GTPase-activating 63.0 14 0.0003 41.4 5.5 76 252-334 751-828 (1112)
292 KOG4092 Mitochondrial F1F0-ATP 62.5 3.6 7.9E-05 32.5 0.9 44 47-90 27-70 (108)
293 KOG2419 Phosphatidylserine dec 61.6 1.8 3.8E-05 46.2 -1.3 59 259-321 279-341 (975)
294 cd08696 C2_Dock-C C2 domains f 60.4 23 0.00049 32.4 5.8 56 296-351 55-118 (179)
295 cd08695 C2_Dock-B C2 domains f 58.3 31 0.00068 31.7 6.3 59 448-508 54-113 (189)
296 cd08694 C2_Dock-A C2 domains f 56.5 38 0.00081 31.3 6.5 60 448-507 54-114 (196)
297 KOG0904 Phosphatidylinositol 3 52.1 44 0.00096 37.6 7.2 94 417-510 342-457 (1076)
298 KOG0694 Serine/threonine prote 50.7 4.3 9.2E-05 44.1 -0.6 70 280-353 27-96 (694)
299 cd08679 C2_DOCK180_related C2 46.9 59 0.0013 29.5 6.4 58 451-508 56-115 (178)
300 KOG0904 Phosphatidylinositol 3 45.4 94 0.002 35.2 8.4 71 260-333 343-421 (1076)
301 cd08696 C2_Dock-C C2 domains f 45.3 86 0.0019 28.6 7.0 62 447-508 54-118 (179)
302 PF10206 WRW: Mitochondrial F1 44.0 14 0.00031 30.2 1.6 36 55-90 35-70 (104)
303 PF07162 B9-C2: Ciliary basal 42.9 2E+02 0.0043 25.8 9.1 80 420-506 4-101 (168)
304 PF14356 DUF4403: Domain of un 37.9 3.6E+02 0.0078 28.3 11.4 88 120-242 280-367 (427)
305 KOG4269 Rac GTPase-activating 37.3 30 0.00066 38.8 3.2 92 414-510 755-857 (1112)
306 KOG4027 Uncharacterized conser 35.9 2.3E+02 0.005 25.1 7.7 72 279-350 24-109 (187)
307 cd08697 C2_Dock-D C2 domains f 34.1 1.5E+02 0.0032 27.3 6.7 62 447-508 56-123 (185)
308 KOG0694 Serine/threonine prote 32.9 20 0.00043 39.2 1.0 50 435-487 27-77 (694)
309 PTZ00447 apical membrane antig 32.7 3.5E+02 0.0075 27.3 9.3 111 259-387 57-171 (508)
310 PF10409 PTEN_C2: C2 domain of 32.4 1.6E+02 0.0034 25.1 6.5 90 261-353 5-98 (134)
311 PF08693 SKG6: Transmembrane a 29.7 30 0.00065 23.0 1.1 12 21-32 26-37 (40)
312 PF15102 TMEM154: TMEM154 prot 27.8 66 0.0014 28.1 3.2 12 28-39 79-90 (146)
313 PF06219 DUF1005: Protein of u 27.3 7.3E+02 0.016 25.9 13.5 64 324-390 95-168 (460)
314 PF07162 B9-C2: Ciliary basal 25.5 4.9E+02 0.011 23.3 10.4 95 264-366 6-116 (168)
315 KOG2419 Phosphatidylserine dec 23.9 19 0.00041 38.8 -1.0 71 416-487 278-355 (975)
316 cd05137 RasGAP_CLA2_BUD2 CLA2/ 22.2 1.3E+02 0.0029 31.2 4.7 44 341-390 1-45 (395)
317 PF10409 PTEN_C2: C2 domain of 20.6 4.6E+02 0.01 22.1 7.2 87 421-510 10-98 (134)
318 PF14909 SPATA6: Spermatogenes 20.3 3.4E+02 0.0075 23.6 6.1 86 420-510 4-100 (140)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=8.8e-68 Score=564.38 Aligned_cols=495 Identities=26% Similarity=0.508 Sum_probs=415.4
Q ss_pred cchhhhhhhhccchhhhHHHHhheeeeeEeccCCCCCcccccccc--cCHHHHHHhcCCCCCCccCCCCCchHHHHHHHH
Q 046405 2 GVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAE--QDSKTVELLLPEIPLWVKNPDYDRVDWLNKFIE 79 (538)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~ 79 (538)
|++||++|++||+++.++++++.++ ++|++..++.++.+|.+.. +..++++ .|+|++||||.+|+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~~-~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~ 231 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVTM-YVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ 231 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence 5799999999999998888776654 5676654444455665442 2233333 69999999999999
Q ss_pred HHChhHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeEEeC--------
Q 046405 80 TMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGSLPPTFQGMKVYVT-DDKELIMEPLLKWAG-------- 150 (538)
Q Consensus 80 ~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~p~i~~v~~~~~-~~~~~~ld~~~~~~~-------- 150 (538)
++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. +.+.+.||++++++.
T Consensus 232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 99999999999999999999999999999 99999999999999999999999986 678899999999953
Q ss_pred -------CCceEEEEEE---cc-eeEEEEEEEEEEEEEEEEEeecCCCCCCeeeEEEEEcCCCCeEEEEEeEec-----c
Q 046405 151 -------NPNILIAAKA---FG-LKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-----A 214 (538)
Q Consensus 151 -------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g-----~ 214 (538)
+++|.+.++. +| +++||.|+|+.|.|++|++.+ |++.+|++..|.++|++.|+|||.++|+| +
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence 5678888865 45 789999999999999999998 99999999999999999999999999986 5
Q ss_pred cccccccHHHHHHHHHHHHHhhhccCCCceeecccccccc-cCCceeEEEEEEEEecCCCcCC--CCCCCCcEEEEEEcC
Q 046405 215 DAMAIPGLYTYVQGLIKDQVANMYLWPKALEVQIMDPAKA-MQKPVGILNVKVLRAMKLKKKD--LIGASDPYVKLKLTD 291 (538)
Q Consensus 215 ~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~~pl~~~~~~-~~~~~G~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~ 291 (538)
|++++|||++||+++|..++++|+++|+.+++++.+.... ...+.|+|.|+|.+|++|...+ ..+..|||+++...+
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~ 469 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD 469 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence 7899999999999999999999999999999998754333 7889999999999999999888 578999999999765
Q ss_pred CCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceE-EEeccccCCC
Q 046405 292 DKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM-TLDLLKNMDP 370 (538)
Q Consensus 292 ~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~l~~~~~~ 370 (538)
... .||++.+++.||+|||+|++.+... ++.|.++|||.+...+|+.+|++.++|..|........ ...+.+
T Consensus 470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~---- 542 (1227)
T COG5038 470 RVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR---- 542 (1227)
T ss_pred ccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeec----
Confidence 443 4999999999999999999999765 78999999999899999999999999999987754432 232222
Q ss_pred CCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC--CCCCCeEEEEEcCee
Q 046405 371 NDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK--YHTNPSARILFRGEE 448 (538)
Q Consensus 371 ~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~ 448 (538)
+.+..|+|+.++.|+|..++........ +. ....++|++.++++++++|... ....-|++++.+.+.
T Consensus 543 ----~~k~vGrL~yDl~ffp~~e~k~~~~~s~----e~---~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke 611 (1227)
T COG5038 543 ----NTKNVGRLTYDLRFFPVIEDKKELKGSV----EP---LEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKE 611 (1227)
T ss_pred ----cCccceEEEEeeeeecccCCcccccccc----CC---cccCCcceeEEEeeccccccCccccccceeEEEEecceE
Confidence 3688999999999999977643222111 01 1223579999999999999752 233445899998876
Q ss_pred E-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccc-eeceEEEcCCCCC
Q 046405 449 K-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNK-RINEKYHLIDSKN 526 (538)
Q Consensus 449 ~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~~ 526 (538)
. .|+..+.+.+|.||+.++-.+.+. .+..+.+.+.|... .+.+|+...+|.+++... .--+||++. +++
T Consensus 612 V~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~k 682 (1227)
T COG5038 612 VYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDLIDRTLDTFLVFPLR-NPK 682 (1227)
T ss_pred EeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHhhhccccceEEEEcC-CCc
Confidence 5 668899999999999999999885 67788888888752 379999999999998754 346899997 569
Q ss_pred eEEEEEEEEEeC
Q 046405 527 GRIQIELQWRAS 538 (538)
Q Consensus 527 G~i~l~~~wkp~ 538 (538)
|+|.++.-|||+
T Consensus 683 g~I~~t~~W~Pi 694 (1227)
T COG5038 683 GRIFITNYWKPI 694 (1227)
T ss_pred ceEEEEecccee
Confidence 999999999995
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=264.78 Aligned_cols=235 Identities=26% Similarity=0.420 Sum_probs=195.0
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEEe
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVYD 332 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d 332 (538)
.+.....|.|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++|+||.|||+|.|.+.. .....|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 455678999999999999999977789999999999888778899999999999999999999653 347899999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCC
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEG 412 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 412 (538)
+|++++|++||++.++|..+........|.++....... ....|+|.++++|.|.
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~--------------------- 296 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT--------------------- 296 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC---------------------
Confidence 999999999999999999999887778888876543221 2223899999999986
Q ss_pred CCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCC-CeEEEEE
Q 046405 413 TPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTD-DKLHVEV 483 (538)
Q Consensus 413 ~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V 483 (538)
.|.|+|.|.+|+||.. .+..||||++++-. +++||.+++++.||+|||+|.|.+...... ..+.++|
T Consensus 297 ----~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 297 ----AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred ----CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 8999999999999986 35789999999843 345999999999999999999988743233 3799999
Q ss_pred EEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 484 ISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 484 ~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
||++. ++++++||++.+.... .+....+|....++
T Consensus 373 ~d~d~----~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~ 407 (421)
T KOG1028|consen 373 WDHDT----LGSNDLIGRCILGSDS--TGEEVRHWQEMLNS 407 (421)
T ss_pred EEccc----ccccceeeEEEecCCC--CchHHHHHHHHHhC
Confidence 99986 6788899999999875 22223455544443
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=5.4e-23 Score=210.70 Aligned_cols=242 Identities=21% Similarity=0.306 Sum_probs=193.6
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
..|.|+|.+|+||+..+..|.+||||.|.++.+.. +||.++.+++.|.|.|+|+|.+... -+.|.|.|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999986654 6999999999999999999999643 678999999999 9999
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceE
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGL 419 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 419 (538)
+.||.+.+.-++|....+.+.|+.|.+ .++ ++...|+|++++.+.+...+ .-
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~-----------------------~~ 132 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS-----------------------SG 132 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-----------------------Cc
Confidence 999999999999998888889998854 343 37889999999999876332 11
Q ss_pred EEEEEeeeccCCC--CCCCCCeEEEEEcCee----EEeecccCCCCCcCcceEEEEecCC--------------CCCCeE
Q 046405 420 LVVILHEAQDVEG--KYHTNPSARILFRGEE----KKTKRIKKNRDPRWEEEFQFTLEEP--------------PTDDKL 479 (538)
Q Consensus 420 L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~----~kT~v~~~t~nP~wne~f~f~v~~~--------------~~~~~l 479 (538)
+...+.+++++.+ .+.+|||++++..+.. ++|++.++|.+|.|+|.|.|.+... +..-.|
T Consensus 133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 2223344445433 3569999999987654 4999999999999999999998753 012367
Q ss_pred EEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC----------CeEEEEEEEEE
Q 046405 480 HVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK----------NGRIQIELQWR 536 (538)
Q Consensus 480 ~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----------~G~i~l~~~wk 536 (538)
.+++|++... ..++.++|++.+++........-..||.|+... -|.+++.+.+.
T Consensus 213 rv~lW~~~~~---~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 213 RVDLWNDLNL---VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred EEeeccchhh---hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 8888885432 345899999999999887656668999997431 37788887764
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=8.6e-22 Score=167.75 Aligned_cols=119 Identities=18% Similarity=0.353 Sum_probs=101.9
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCC-CCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHR-NLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
.|.|+|+|++|++++..+ .|++||||++.++++.. +|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998877 79999999999987654 8999865 79999999999999754 468999999999999
Q ss_pred CCCccEEEEEeCc-cCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 338 HHDKMGMNVIPLK-DITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 338 ~d~~lG~~~i~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+|++||++.+++. .+..++..+.|++|.+. ......|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777778889988541 123577999999987
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.6e-20 Score=161.58 Aligned_cols=119 Identities=29% Similarity=0.460 Sum_probs=100.9
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC-----CCCCeEEEEEEecCCC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD-----PEYQALELQVYDWEKV 336 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~v~d~~~~ 336 (538)
++|+|++|+||+.++..|.+||||++++++.. ++|++++++.||+|||+|.|.+.. +..+.|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 499999999999999999999976 3467899999999999
Q ss_pred CCCCccEEEEEeCccCC--CCCCceEEEeccccCCCCCCCCCccccEEEEEEE
Q 046405 337 GHHDKMGMNVIPLKDIT--PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVL 387 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
++|++||++.++++++. .+.....|++|..... +..+..|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----KDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----CCccccceEEEEeC
Confidence 99999999999999987 4556678998853211 23567899999873
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=4.7e-20 Score=158.77 Aligned_cols=121 Identities=30% Similarity=0.513 Sum_probs=106.2
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
+|+|+|++|++|+..+..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.++ .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999997533 35999999999999999999999765 578999999999999999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+||++.++++++..+...+.|++|... ++.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999988888999988431 12467899999999875
No 7
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=5.3e-20 Score=156.79 Aligned_cols=112 Identities=23% Similarity=0.420 Sum_probs=97.5
Q ss_pred eEEEEEEeeeccCCCC--CCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK--YHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|+|+|++|++++.. +.+||||++++++.+.+|+++++ +.||+|||.|+|.+.+. ...|.|+|+|++. ++
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----Cc
Confidence 7899999999988653 78999999999999999999876 79999999999999753 4679999999986 67
Q ss_pred CCCccEEEEEecc-hhcccceeceEEEcCCC----CCeEEEEEEEE
Q 046405 495 PKETLGYIGINLA-DVVNNKRINEKYHLIDS----KNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~L~-~l~~~~~~~~~~~L~~~----~~G~i~l~~~w 535 (538)
+|++||++.+++. .+..++..++||+|.+. ..|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 8999999999996 46666668999999873 46999999975
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=3.5e-20 Score=158.89 Aligned_cols=117 Identities=27% Similarity=0.422 Sum_probs=101.1
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999998644 4788764 5789999999999998766788999999998776
Q ss_pred CCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 339 HDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
|++||++.++++++..+.....|++|.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 9999999999999877766778888743 24678999999986
No 9
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=9.4e-20 Score=155.74 Aligned_cols=115 Identities=29% Similarity=0.504 Sum_probs=103.1
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
+|+|+|++|++|+..+..|.+||||+++++++. ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 479999999999999988999999999997644 58999999999999999999998776789999999999989999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+||++.++++++..+...+.|++|. ...|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999988889999883 2369999998874
No 10
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=1.3e-19 Score=158.56 Aligned_cols=122 Identities=31% Similarity=0.465 Sum_probs=103.4
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
......|.|+|+|++|++|+..+..|.+||||+++++.+. ++|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3456789999999999999999988999999999997654 4999999999999999999999877678999999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCC--Cc---eEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEE--PR---EMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~--~~---~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+..++|++||++.+++.++.... .. ..++.+ .....|+|++++.+
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 99999999999999999998622 11 123322 25678999999976
No 11
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=1.9e-19 Score=154.48 Aligned_cols=116 Identities=31% Similarity=0.480 Sum_probs=101.6
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433456999999999999999999999766567899999999988 8999
Q ss_pred cEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
||++.++++++..+.....|++|. .+..|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988888999873 2457999888865
No 12
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.6e-19 Score=153.38 Aligned_cols=107 Identities=28% Similarity=0.399 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcC----CCCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEEEec
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTD----DKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQVYDW 333 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~ 333 (538)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 49999999999842 333346899999999999999999999743 346799999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccC
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNM 368 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~ 368 (538)
+..++|++||++.++++++..++....|++|.+.+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98888999999999999999998888999986644
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=9.7e-20 Score=152.54 Aligned_cols=113 Identities=22% Similarity=0.210 Sum_probs=96.7
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCCCCCCCeEEEEEcC----eeEEeeccc
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYHTNPSARILFRG----EEKKTKRIK 455 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~ 455 (538)
|+|++++.|.|. .+.|+|+|++|+||+..+.+||||++++.. .+++|++.+
T Consensus 1 ~~l~fsL~Y~~~-------------------------~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 1 PKLHYSLSYDKQ-------------------------KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CeEEEEEEEcCc-------------------------CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 579999999876 899999999999999777899999999964 356999999
Q ss_pred CCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 456 KNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 456 ~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
+|.||+|||.|.|.+.... ....|.+.|+|.++ ++++++||++.++++++.......+|-.|
T Consensus 56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999987532 23479999999996 78999999999999987655556678654
No 14
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.8e-19 Score=154.47 Aligned_cols=116 Identities=28% Similarity=0.400 Sum_probs=99.1
Q ss_pred EEEEEEEEecC---CCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 261 ILNVKVLRAMK---LKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 261 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
.|+|+|++|+| |+.+|..|.+||||++++++++. ||++++++.||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence 38999999999 88899999999999999987654 899999999999999999999776 458999999998873
Q ss_pred ------CCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEE
Q 046405 338 ------HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVV 384 (538)
Q Consensus 338 ------~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (538)
+|++||++.++++++..+.....|++|... ++ +..+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~~---~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-NP---SGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-CC---CCccCCcEEEe
Confidence 899999999999999998888889988531 11 22556788765
No 15
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=7.3e-20 Score=153.28 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=88.7
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC-CCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD-DKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
....|.|+|+|++|+||+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+... ....|.++|||
T Consensus 10 ~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 345799999999999998 3 36799999999964 344567999999999999999999998643 36789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEe
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLD 363 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 363 (538)
+|+++++++||++.++++++..+.+.+.|.+
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred CCCCCCCceEEEEEEccccccCCccccchhc
Confidence 9999999999999999998866656666654
No 16
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.81 E-value=4.2e-18 Score=184.43 Aligned_cols=311 Identities=23% Similarity=0.370 Sum_probs=223.7
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCc-------eee---ccccc----cc-ccCCceeEEEEEEEEecCCCcCCCCCCCCc
Q 046405 219 IPGLYTYVQGLIKDQVANMYLWPKA-------LEV---QIMDP----AK-AMQKPVGILNVKVLRAMKLKKKDLIGASDP 283 (538)
Q Consensus 219 iP~l~~~i~~~i~~~i~~~~v~P~~-------~~~---pl~~~----~~-~~~~~~G~L~V~v~~A~~L~~~d~~g~~dp 283 (538)
++....=+.+.|.......++.|.+ ++. |+... +. ....+.|.++|+|..|.+|......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 3444444556777777777777765 222 55421 11 467899999999999999998778899999
Q ss_pred EEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCce---E
Q 046405 284 YVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE---M 360 (538)
Q Consensus 284 yv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~---~ 360 (538)
|+++.+++.. ++||-....+.||.|||..+.++..+ .+.+.++++|++..+.|..+|++.++.+++....+.. .
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998643 46898889999999999999999876 6789999999999999999999999999987632221 1
Q ss_pred EEeccccCCCCCCCCCccccEEEEEEEEEeecCCCC------------------------CC------------------
Q 046405 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEI------------------------PP------------------ 398 (538)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~------------------------~~------------------ 398 (538)
...-..........+....|++.+.+.|+|..-.-. .+
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 111111111111113567899999999988543100 00
Q ss_pred ----C---------C-------------------------------CC-C------CC----------------------
Q 046405 399 ----D---------M-------------------------------DG-P------NS---------------------- 405 (538)
Q Consensus 399 ----~---------~-------------------------------~~-~------~~---------------------- 405 (538)
+ . .+ . ..
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0 0 00 0 00
Q ss_pred -----c-cCC------------------------------CC---------------C-----CCCCceEEEEEEeeecc
Q 046405 406 -----V-QKA------------------------------PE---------------G-----TPEGGGLLVVILHEAQD 429 (538)
Q Consensus 406 -----~-~~~------------------------------~~---------------~-----~~~~~g~L~v~v~~a~~ 429 (538)
. ..+ +. . .-.++|.|.|.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 000 00 0 01146789999999999
Q ss_pred CCCC---CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEe
Q 046405 430 VEGK---YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGIN 505 (538)
Q Consensus 430 L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~ 505 (538)
|+.. +.+||||++.++++ .++|++++++.||+|||.|+..+.+. ..+.+.+.|+|++.. .+++.||++.++
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~----~knd~lg~~~id 1126 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG----EKNDLLGTAEID 1126 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC----CCcccccccccc
Confidence 9873 56999999999988 57999999999999999999999875 678899999999863 688999999999
Q ss_pred cchhcccceeceEEEcCCCC----CeEEEEEEEEEe
Q 046405 506 LADVVNNKRINEKYHLIDSK----NGRIQIELQWRA 537 (538)
Q Consensus 506 L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~wkp 537 (538)
|+.+..+...+...+|.+.. +|.++....++|
T Consensus 1127 L~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1127 LSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred HhhcCcCCccceeeeccCcceEecccEeecceecch
Confidence 99998877656666665543 466766666654
No 17
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=7.3e-20 Score=158.83 Aligned_cols=100 Identities=45% Similarity=0.732 Sum_probs=92.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
...|.|+|+|.+|.||..+|..++|||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 56899999999999999999889999999999998886 899999999999999999999988 67999999999999
Q ss_pred CCCCccEEEEEeCccCCCCCCceE
Q 046405 337 GHHDKMGMNVIPLKDITPEEPREM 360 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++||+||.++|++..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987754443
No 18
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3.1e-19 Score=154.96 Aligned_cols=121 Identities=32% Similarity=0.447 Sum_probs=102.0
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC---CCeEEEEEEecCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE---YQALELQVYDWEKVG 337 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~v~d~~~~~ 337 (538)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998754 48999999999999999999997543 368999999998876
Q ss_pred -CCCccEEEEEeCccCC-CCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 338 -HHDKMGMNVIPLKDIT-PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 338 -~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+|++||++.++++++. .+.....|++|.+.. ..++.+|+|++++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455667888885421 1245789999999874
No 19
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=4.6e-19 Score=157.50 Aligned_cols=128 Identities=25% Similarity=0.311 Sum_probs=105.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCC-CCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHR-NLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999998754 48888866 69999999999999876667999999999988899
Q ss_pred CccEEEEEeCccCCCC----CCceEEEeccccCCCC-CCCCCccccEEEEEEEEEee
Q 046405 340 DKMGMNVIPLKDITPE----EPREMTLDLLKNMDPN-DTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~~-~~~~~~~~G~l~l~l~~~p~ 391 (538)
++||++.++|+++..+ .....|++|.+..... +.+..+..|+|+|.++|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999999753 3457899986542210 11235678999999999854
No 20
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=6.8e-19 Score=151.62 Aligned_cols=112 Identities=29% Similarity=0.524 Sum_probs=100.9
Q ss_pred eEEEEEEeeeccCCCC---------CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEGK---------YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
|.|+|+|++|+||+.. +.+||||++++++..++|++++++.||+|||.|+|.+... ..+.|.++|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 4689999999999889999999999999999999999764 46789999999974
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEE
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
. +|++||++.++|+++..++..++||+|.+..+|+|+|+++|
T Consensus 80 ----~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 ----D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred ----C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 3 78999999999999998777899999998889999999998
No 21
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=6.1e-19 Score=153.51 Aligned_cols=123 Identities=25% Similarity=0.397 Sum_probs=103.8
Q ss_pred eEEEEEEEEecCCCcCCC--CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 260 GILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
|+|+|+|++|++|+..+. .+.+||||++.+++.. .+|++++++.||.|||+|.|.+.++..+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999997544 48999999999999999999998766789999999999988
Q ss_pred CCCccEEEEEeCccCCC---CCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 338 HHDKMGMNVIPLKDITP---EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
++++||++.+++.++.. ......|++|.... ...+....|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence 99999999999999973 23456788875421 11335689999999875
No 22
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=7.5e-19 Score=151.74 Aligned_cols=122 Identities=26% Similarity=0.464 Sum_probs=104.2
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997544 48999999999999999999998766678999999999999999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
+||++.++++++..+.....|+.|.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667788888654322 233477889998876
No 23
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=9.3e-19 Score=151.45 Aligned_cols=122 Identities=30% Similarity=0.516 Sum_probs=101.1
Q ss_pred eeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 259 VGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467899999999863 23469999999999999999999987 44789999999999988
Q ss_pred CCCccEEEEEeCccCCCCCCce-EEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 338 HHDKMGMNVIPLKDITPEEPRE-MTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+|++||++.+++.++..+.... .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 233221 13567899999999986
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=5.1e-19 Score=152.08 Aligned_cols=105 Identities=30% Similarity=0.368 Sum_probs=92.2
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEE-e--CCCCCeEEEEEEec
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVV-K--DPEYQALELQVYDW 333 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~v~d~ 333 (538)
.|.|.|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 589999999999999999 8999999999997542 3457999999999999999999987 2 33467899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+.++++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987767778765
No 25
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.2e-18 Score=149.60 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=100.7
Q ss_pred EEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 262 LNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 262 L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
|.|+|++|+||+..+ ..|.+||||+++++++. .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 789999999999874 45789999999996543 36899999999999999999999754 478999999999999999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+||++.++++++..+...+.|++|.+.. ..++..|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999887888999986431 124468999998764
No 26
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1.2e-18 Score=153.00 Aligned_cols=110 Identities=27% Similarity=0.398 Sum_probs=95.3
Q ss_pred eeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEE-ecC
Q 046405 259 VGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVY-DWE 334 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~~ 334 (538)
.|.|.|+|++|+||...+ ..|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 56889999999996543 34679999999999999999999997 56789999999 678
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEeccccCC
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMD 369 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~ 369 (538)
.++++++||++.++|+++..+.....|++|.+...
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 88899999999999999987777788998865443
No 27
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=1.9e-18 Score=149.84 Aligned_cols=122 Identities=22% Similarity=0.411 Sum_probs=103.2
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|.|+|++|+||+. ..|.+||||+++++.. ...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 6689999999999742 234699999999999999999999854 36789999999999999999
Q ss_pred cEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
||++.++++++..+.....|++|..... .+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence 9999999999998877778888754211 235679999999999865
No 28
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.79 E-value=9.7e-19 Score=151.66 Aligned_cols=111 Identities=23% Similarity=0.350 Sum_probs=95.4
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCC----CCCCeEEEEEEEccCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEP----PTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~v~V~d~~~~~g~ 492 (538)
++|+|++|+||+.. +.+||||++++++.+++|++++++.||+|||.|+|.+... +....|.++|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence 47999999999863 5799999999999999999999999999999999999762 245689999999975
Q ss_pred CCCCCccEEEEEecchhc--ccceeceEEEcCCC------CCeEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVV--NNKRINEKYHLIDS------KNGRIQIELQ 534 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~--~~~~~~~~~~L~~~------~~G~i~l~~~ 534 (538)
+++|++||++.++|+++. .+....+||+|.+. ..|+|++++|
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 568999999999999998 44567899999753 2599999875
No 29
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.6e-18 Score=148.68 Aligned_cols=123 Identities=21% Similarity=0.316 Sum_probs=102.0
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+..+....+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999875 468999999997543 2478875 58999999999998765544689999999999999
Q ss_pred CCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 339 HDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
|++||++.+++.++..+...+.|++|.+.. ....+..|+|+++++|.+.
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEcc
Confidence 999999999999999888888999986531 1235678999999999863
No 30
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.2e-18 Score=150.08 Aligned_cols=115 Identities=30% Similarity=0.485 Sum_probs=100.5
Q ss_pred eEEEEEEEEecCCCcCCC------CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDL------IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
|+|+|+|++|+||+..+. .|.+||||+++++++ .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 368999999999863 35999999999999999999999876678999999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+.. +|++||++.++++++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877778899873 2367999998865
No 31
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.78 E-value=3.7e-18 Score=147.87 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=101.6
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998764 4999999999999999999988765 67899999999876
Q ss_pred CCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 338 HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
.|++||++.+++.++..... .+++|.+.. ...+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~--~~~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTL--RTLPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCc--eEEEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998755444 444543221 1234788999999998765
No 32
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=1.6e-18 Score=149.68 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=98.8
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC----CCCCCCeEEEEEcC-----eeE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG----KYHTNPSARILFRG-----EEK 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~ 449 (538)
+|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~ 55 (125)
T cd04029 1 SGEILFSLSYDYK-------------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence 4999999999764 7889999999999975 25799999999952 346
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
||++++++.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.++|.++..+...+.||+|.
T Consensus 56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999999999999999999986532 24579999999975 578999999999999998877789999984
No 33
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=2.9e-18 Score=147.12 Aligned_cols=115 Identities=26% Similarity=0.405 Sum_probs=96.9
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|+|+|++|+||+.. .+||||+++++++. .+|++++++.||+|||+|.|.+.++....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 389999999999877 68999999998643 5999999999999999999998776678999999999976 799
Q ss_pred ccEEEEEeCccCCCCC-----CceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 341 KMGMNVIPLKDITPEE-----PREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+||++.++++++.... ....|++|.... +.+.+|+|+++++|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEec
Confidence 9999999999997543 245788875421 246789999999883
No 34
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.78 E-value=2.1e-18 Score=148.28 Aligned_cols=112 Identities=27% Similarity=0.375 Sum_probs=95.9
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC--CCCCCCeEEEEEcC-----eeEEe
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG--KYHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT 451 (538)
.|+|++++.|. .+.|.|.|++|+||+. .+.+||||++++.. .++||
T Consensus 1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT 53 (122)
T cd08381 1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT 53 (122)
T ss_pred CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence 38999999996 4779999999999976 45799999999963 35699
Q ss_pred ecccCCCCCcCcceEEEEe-cC-CCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 452 KRIKKNRDPRWEEEFQFTL-EE-PPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v-~~-~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
++++++.||+|||+|+|.+ .. ......|.++|||++. ++++++||++.++|+++..++..+.||+|
T Consensus 54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999987 21 1234689999999985 57899999999999999887777999997
No 35
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.6e-18 Score=149.76 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEcC-----eeE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFRG-----EEK 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 449 (538)
+|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~ 55 (125)
T cd08393 1 QGSVQFALDYDPK-------------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence 5999999999864 67899999999999862 5799999999952 346
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
||++++++.||+|||.|.|.+.... ....|.++|||++. ++++++||++.++|.++..++....||+|+
T Consensus 56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999986422 23589999999975 678999999999999997766778999984
No 36
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=2.2e-18 Score=147.74 Aligned_cols=112 Identities=24% Similarity=0.456 Sum_probs=97.3
Q ss_pred eEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 418 GLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|+|++|+||+. .+.+||||++++++..++|+++++ +.||+|||.|.|.+... ..+.|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence 679999999999986 357999999999998889998765 79999999999999864 45789999999875 3
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCCC--CeEEEEEEEE
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDSK--NGRIQIELQW 535 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~--~G~i~l~~~w 535 (538)
+ |++||++.++++++..+....+||+|.+.+ .|+|+|+++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 3 899999999999998776679999998653 6999999986
No 37
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=3.4e-18 Score=149.84 Aligned_cols=123 Identities=35% Similarity=0.566 Sum_probs=101.9
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997541 2245899999999999999999998654 57899999999999
Q ss_pred CCCCccEEEEEeCccCCCCCC------ceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 337 GHHDKMGMNVIPLKDITPEEP------REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
++|++||++.+++.++..... ...|++|.+.. ..++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS-----SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC-----CCCcceeEEEEEEeeC
Confidence 999999999999999986543 34677765321 1256799999999883
No 38
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=5.8e-18 Score=146.50 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=98.6
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
...|+|+|++|+||+..+.+||||++++++.. .+|++ +++.||.|||.|.|.+... ....+.|.|+|++. +++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence 45799999999999988889999999998755 58887 5689999999999987543 44679999999875 578
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCC------CeEEEEEEEEEe
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSK------NGRIQIELQWRA 537 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~wkp 537 (538)
|++||++.++|+++..+...+.||+|.+.+ .|+|+|+++|++
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999999999998877789999997642 499999999986
No 39
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=5.3e-18 Score=152.32 Aligned_cols=123 Identities=28% Similarity=0.449 Sum_probs=103.1
Q ss_pred eeEEEEEEEEecCCCcCC------------------------------CCCCCCcEEEEEEcCCCCCceeeeecCCCCCc
Q 046405 259 VGILNVKVLRAMKLKKKD------------------------------LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNP 308 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP 308 (538)
.|+|.|+|.+|++|+++| ..|.+||||++++++... .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999987 246789999999986543 589999999999
Q ss_pred eeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 309 EWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 309 ~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.|||+|.|.+... .+.|.|+|||+|..+ +++||++.++++++..+...+.|++|... ..+..+..|+|++++.|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEEE
Confidence 9999999998765 568999999999775 68999999999999988888899998542 11124557899999988
Q ss_pred E
Q 046405 389 K 389 (538)
Q Consensus 389 ~ 389 (538)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 3
No 40
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=3.8e-18 Score=149.77 Aligned_cols=116 Identities=25% Similarity=0.334 Sum_probs=98.5
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEcC-----
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFRG----- 446 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~----- 446 (538)
....|+|++++.|. .+.|.|+|++|+||... +.+||||++++..
T Consensus 14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~ 66 (146)
T cd04028 14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI 66 (146)
T ss_pred CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence 45689999999983 57899999999999752 4689999999953
Q ss_pred eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEE-ccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIS-TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d-~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
.++||++++++.||+|||.|+|.+. ..+..|.++||+ .+. ++++++||.+.|+|+++..+.....||+|.++
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~--l~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS--PTGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc--CCCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2569999999999999999999998 356789999995 442 57889999999999998766677899999865
No 41
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=2.1e-18 Score=149.12 Aligned_cols=108 Identities=29% Similarity=0.376 Sum_probs=93.6
Q ss_pred CceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 331 (538)
...+.|.|+|++|+||+.++.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 4468999999999999999875 899999999996543 345699999999999999999999863 23568999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.++++++||++.++|.++...+....|++|
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999999999999999999999877777778875
No 42
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=6.5e-18 Score=144.31 Aligned_cols=112 Identities=21% Similarity=0.358 Sum_probs=99.9
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
+++|+|++|+||+.. +.+||||++++++..++|++++++.||.|||.|+|.+... ....|.++|||++. +++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence 478999999999873 5789999999999899999999999999999999999764 46789999999985 568
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEEE
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~wk 536 (538)
|++||++.++|+++..+...+.||+|.+. +|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999999887778999999865 79999998874
No 43
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=7.6e-18 Score=144.61 Aligned_cols=118 Identities=34% Similarity=0.529 Sum_probs=100.1
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999997654 4899999999999999999998654 57899999999988899
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
++||++.+++.++..+. ..|+.|... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECccc-----CCCCceeeEEEEEEEe
Confidence 99999999999997664 356666432 1124579999999876
No 44
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=3.1e-18 Score=147.88 Aligned_cols=109 Identities=30% Similarity=0.437 Sum_probs=94.6
Q ss_pred CCceeEEEEEEEEecCCCcCCC-CCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDL-IGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+... ....|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567899999999999998765 4789999999996543 3457999999999999999999998643 356899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.+++.++...+....|++|
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9999999999999999999999988888888876
No 45
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=6.2e-18 Score=147.12 Aligned_cols=113 Identities=23% Similarity=0.407 Sum_probs=98.9
Q ss_pred eEEEEEEeeeccCCC-----CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 418 GLLVVILHEAQDVEG-----KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 418 g~L~v~v~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
|.|+|+|++|+||+. .+.+||||++++++.+++|++++++.||.|||.|+|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence 689999999999975 35789999999999999999999999999999999999863 46799999999985
Q ss_pred CCCCCccEEEEEecchhcc---cceeceEEEcCCC-------CCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVN---NKRINEKYHLIDS-------KNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~-------~~G~i~l~~~w 535 (538)
++.+++||++.++|.++.. .....+||+|.+. .+|+|+|+++|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5678999999999999983 3346899999865 37999999998
No 46
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=9.8e-18 Score=144.28 Aligned_cols=112 Identities=23% Similarity=0.377 Sum_probs=99.2
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcC-eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRG-EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+. .+.+||||++++++ ..++|++++++.||+|||.|.|.+.+. .+.+.++|||++. +++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~~ 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GLT 75 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CCC
Confidence 7899999999986 35899999999987 467999999999999999999998763 4789999999985 568
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCC----CeEEEEEEEEEe
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSK----NGRIQIELQWRA 537 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~wkp 537 (538)
|++||++.++|+++..+...+.|++|.+.+ .|+|++.+.+.|
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 999999999999999887788999998654 599999999987
No 47
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=3.6e-18 Score=147.67 Aligned_cols=109 Identities=30% Similarity=0.616 Sum_probs=96.1
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~ 333 (538)
....|.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 445789999999999999999889999999999965444457999999999999999999998643 256899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+.+++|++||++.++++++..++....|++|
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 9999999999999999999988788888876
No 48
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=2.8e-18 Score=145.17 Aligned_cols=95 Identities=31% Similarity=0.514 Sum_probs=84.8
Q ss_pred eEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~~~ 335 (538)
|+|+|+|++|++|+..+.. |.+||||++++.+.....++|++++++.||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7999999999999999987 8999999999965444457999999999999999999988654 35789999999999
Q ss_pred CCCCCccEEEEEeCccCCC
Q 046405 336 VGHHDKMGMNVIPLKDITP 354 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~ 354 (538)
.++|++||++.++++++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999984
No 49
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=6.6e-18 Score=144.86 Aligned_cols=111 Identities=21% Similarity=0.401 Sum_probs=93.0
Q ss_pred EEEEEEeeecc---CCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC--
Q 046405 419 LLVVILHEAQD---VEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM-- 490 (538)
Q Consensus 419 ~L~v~v~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~-- 490 (538)
+|+|+|++|++ |+. .|.+||||++++++++.||++++++.||+|||.|.|.+.+. ...|.|+|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48999999999 654 36899999999999999999999999999999999999763 358999999997510
Q ss_pred CCCCCCCccEEEEEecchhcccceeceEEEcCCC------CCeEEEE
Q 046405 491 GLLHPKETLGYIGINLADVVNNKRINEKYHLIDS------KNGRIQI 531 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l 531 (538)
+.+.+|++||++.++|+++..+...+.||+|... +.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0124799999999999999988888999999843 3577664
No 50
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=7.4e-18 Score=148.92 Aligned_cols=124 Identities=24% Similarity=0.369 Sum_probs=97.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEe---------------CCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVK---------------DPEY 323 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~ 323 (538)
.|+|+|++|+||+. ..|.+||||++++.+. +...++|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 4689999999999763 223468999999999999999999985 1123
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEeCccCCCC-CCceEEEeccccCCCCC-----CCCCccccEEEEEE
Q 046405 324 QALELQVYDWEKVGHHDKMGMNVIPLKDITPE-EPREMTLDLLKNMDPND-----TRNEKSRGQVVVEV 386 (538)
Q Consensus 324 ~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 386 (538)
..|.++|||++..++|++||++.+++.++..+ .....|++|.+..+..+ ..+....|.|++.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999987 56778998865433321 12344567777654
No 51
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=7e-18 Score=144.78 Aligned_cols=111 Identities=21% Similarity=0.389 Sum_probs=96.9
Q ss_pred EEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCc
Q 046405 419 LLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKET 498 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~ 498 (538)
.|+|+|++|+||+.. .+||||++++++...+|++++++.||+|||.|+|.+... ....|.++|||++. + ++++
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF 73 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence 488999999999987 899999999999888999999999999999999998763 56789999999974 3 6899
Q ss_pred cEEEEEecchhcccc-----eeceEEEcCCCC----CeEEEEEEEEE
Q 046405 499 LGYIGINLADVVNNK-----RINEKYHLIDSK----NGRIQIELQWR 536 (538)
Q Consensus 499 lG~~~i~L~~l~~~~-----~~~~~~~L~~~~----~G~i~l~~~wk 536 (538)
||++.++|+++..+. ..++||+|.+.+ +|+|+|+++|-
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999999987532 256999998754 59999999873
No 52
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=8.7e-18 Score=149.31 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=97.0
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
.|+|+|++|+||+. .+.+||||+++++++..+|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence 48999999999976 368999999999998899999876 69999999999999763 45789999999874 46
Q ss_pred CCCccEEEEEecchhccc----ceeceEEEcCCCC-----------CeEEEEEEEEEe
Q 046405 495 PKETLGYIGINLADVVNN----KRINEKYHLIDSK-----------NGRIQIELQWRA 537 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~~~wkp 537 (538)
+|++||++.++|+++..+ ...++||+|.+.+ +|+|+|++++-+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 789999999999998753 3468999998653 399999998753
No 53
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=7.6e-18 Score=145.70 Aligned_cols=109 Identities=33% Similarity=0.477 Sum_probs=95.8
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~ 333 (538)
....|.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 345689999999999999999889999999999976554567999999999999999999998642 356899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+.+++|++||++.++++++..+.....|+++
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 9999999999999999999888778888876
No 54
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=8.3e-18 Score=145.46 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=96.9
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEcC-----eeE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFRG-----EEK 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 449 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~Y~~~-------------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~ 55 (128)
T cd08392 1 TGEIEFALHYNFR-------------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR 55 (128)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence 4999999999865 68999999999999752 6789999999952 356
Q ss_pred EeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc---ceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN---KRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~ 522 (538)
||++++++.||+|||.|.|.+..... ...|.+.|||.+. ++++++||++.|+|+++.-. ....+||+|.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999865322 3589999999875 57899999999999998543 3678999983
No 55
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=2.3e-17 Score=144.44 Aligned_cols=115 Identities=24% Similarity=0.495 Sum_probs=101.0
Q ss_pred CceEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 416 GGGLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..|.|+|+|++|++|+. .+.+||||++++++..++|++++++.||.|||.|+|.+.+. ..+.|.++|||++.
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~---- 87 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF---- 87 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC----
Confidence 46999999999999976 36899999999999999999999999999999999999764 45789999999985
Q ss_pred CCCCCccEEEEEecchhcc-----cceeceEEEcCCCCCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVN-----NKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
+++|++||++.++|.++.. +..+.+|..|.+...|+|+|++.+
T Consensus 88 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 5689999999999999986 334567888877778999999876
No 56
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=8.6e-18 Score=143.62 Aligned_cols=102 Identities=24% Similarity=0.342 Sum_probs=86.0
Q ss_pred ceEEEEEEeeeccCCCC--CCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCC
Q 046405 417 GGLLVVILHEAQDVEGK--YHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSR 489 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~ 489 (538)
.+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||.|.|.+........+.+.|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999763 5789999999964 2459999999999999999999987543445799999998752
Q ss_pred CCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 490 MGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
..++++||.+.++|.++..++..++||.|
T Consensus 91 ---~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 ---SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ---cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 23578999999999999877778999986
No 57
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2e-17 Score=144.63 Aligned_cols=116 Identities=30% Similarity=0.494 Sum_probs=100.7
Q ss_pred eeEEEEEEEEecCCCcCCCC----------CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLI----------GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALEL 328 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v 328 (538)
.|.|+|+|++|++|+..+.. |.+||||+++++++.. .+|++++++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 48999999999999988752 5789999999986543 489999999999999999999963 578999
Q ss_pred EEEecCCCCCCCccEEEEEeCccCCC--CCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 329 QVYDWEKVGHHDKMGMNVIPLKDITP--EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+|||++..+++++||++.++|.++.. +...+.|++|. ..|+|++.++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 55678899872 4699999999874
No 58
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=2.7e-17 Score=142.72 Aligned_cols=119 Identities=34% Similarity=0.469 Sum_probs=100.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|+|+|++|++|+..+..+.+||||++...+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998654334569999999999999999999997765678999999999888999
Q ss_pred ccEEEEEeCccCCC---CCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 341 KMGMNVIPLKDITP---EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 341 ~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
+||++.+++.++.. +.....|+++. ..|++++.+.|...
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEeee
Confidence 99999999987643 33567888862 26899999988643
No 59
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.2e-17 Score=144.98 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=97.1
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCC--CCeEEEEEEEccCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPT--DDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~v~V~d~~~~~g~~ 493 (538)
.|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|.|.+..... ...|.|+|||++. +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence 48899999999975 3679999999999999999999999999999999999975321 3579999999874 4
Q ss_pred C-CCCccEEEEEecchhc-ccceeceEEEcCCC-----CCeEEEEEEEEE
Q 046405 494 H-PKETLGYIGINLADVV-NNKRINEKYHLIDS-----KNGRIQIELQWR 536 (538)
Q Consensus 494 ~-~d~~lG~~~i~L~~l~-~~~~~~~~~~L~~~-----~~G~i~l~~~wk 536 (538)
. +|++||++.++++++. .+....+||+|... .+|+|+|++++.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 4 7899999999999998 45567899999864 379999999874
No 60
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1.2e-17 Score=144.82 Aligned_cols=109 Identities=26% Similarity=0.364 Sum_probs=91.3
Q ss_pred CCceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEE-EeC--CCCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV-VKD--PEYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v~ 331 (538)
....+.|+|+|++|+||+..+.. |.+||||++++.+....+.||++++++.||.|||+|.|. +.. .....|.++||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 34568999999999999998876 889999999997655556799999999999999999994 431 22457999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCC--CCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPE--EPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l 364 (538)
|+|.+++|++||++.++|+++... +....|+++
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 999999999999999999999755 455677765
No 61
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.9e-17 Score=141.99 Aligned_cols=111 Identities=19% Similarity=0.387 Sum_probs=97.0
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
.|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||.|+|.+... ....|.|+|||++.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---- 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---- 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----
Confidence 378999999999863 5799999999963 457999999999999999999999764 45679999999975
Q ss_pred CCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
+ +|++||++.++++++..+.....||+|.+.+.|++++++.+
T Consensus 76 ~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 76 V-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred C-CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 4 78999999999999988888899999998888999988865
No 62
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=2.2e-17 Score=141.95 Aligned_cols=118 Identities=23% Similarity=0.452 Sum_probs=98.8
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|.|+|++|++|+.++..|.+||||++.+++.. ..+|++++++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997543 35999999999999999999998654 4789999999999999999
Q ss_pred cEEEEEeCccCCCC-CCceEEEeccccCCCCCCCCCccccEEEEEEE
Q 046405 342 MGMNVIPLKDITPE-EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVL 387 (538)
Q Consensus 342 lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
||++.++++++..+ ...+.|++|.+. + ......|+|++.+.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-~----~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-D----PDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-C----CCCccccEEEEEEE
Confidence 99999999988754 236788887432 1 12457899998864
No 63
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=3.5e-17 Score=143.58 Aligned_cols=120 Identities=20% Similarity=0.370 Sum_probs=99.0
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---------CCCeEEEEEE
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---------EYQALELQVY 331 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~v~ 331 (538)
.|+|+|++|++|+.+|..|.+||||+++++++. ++|+++++|.||.|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997654 4899999999999999999975432 1257999999
Q ss_pred ecCCCCCCCccEEEEE-eCccCCC---CCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 332 DWEKVGHHDKMGMNVI-PLKDITP---EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999986 4444443 356678888853 24579999999999875
No 64
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.74 E-value=1.7e-17 Score=143.49 Aligned_cols=115 Identities=21% Similarity=0.349 Sum_probs=99.2
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc---CeeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR---GEEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~---~~~~kT~ 452 (538)
+|+|++++.|.|. .+.|.|+|++|+||+. .+.+||||++++. ...++|+
T Consensus 2 ~G~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08387 2 RGELHFSLEYDKD-------------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSK 56 (124)
T ss_pred CCEEEEEEEECCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCc
Confidence 6999999999864 6899999999999986 3579999999994 3357999
Q ss_pred cccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+.... ....|.++|||++. ++++++||++.++|+++..++..+.||+|+
T Consensus 57 v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 57 IHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999986531 23589999999975 578999999999999998777889999986
No 65
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=9.4e-18 Score=140.68 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=82.1
Q ss_pred eEEEEEEEEecCCCcCCCC----CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecC
Q 046405 260 GILNVKVLRAMKLKKKDLI----GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWE 334 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~ 334 (538)
|+|.|+|++|++|+..+.. +.+||||+++++++. +||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7999999999999987632 358999999997543 48999999999999999999986543 458999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCC
Q 046405 335 KVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998764
No 66
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=3.3e-17 Score=142.00 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=97.9
Q ss_pred EEEEEeeeccCCC-CCCCCCeEEEEEcC--eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCC
Q 046405 420 LVVILHEAQDVEG-KYHTNPSARILFRG--EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPK 496 (538)
Q Consensus 420 L~v~v~~a~~L~~-~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d 496 (538)
|.|+|++|+||+. .+.+||||++++++ .+++|++++++.||+|||.|.|.+.. ....|.|+|||++. +++|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence 5789999999976 35799999999974 56799999999999999999999864 35789999999985 4679
Q ss_pred CccEEEEEecchhcccceeceEEEcCCC------CCeEEEEEEEEEeC
Q 046405 497 ETLGYIGINLADVVNNKRINEKYHLIDS------KNGRIQIELQWRAS 538 (538)
Q Consensus 497 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~wkp~ 538 (538)
++||++.++++++.......+||+|.+. ..|+|+++++|.+.
T Consensus 75 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 75 KFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 9999999999999987777899999854 37999999999763
No 67
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=1e-17 Score=143.62 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=91.5
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC---CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 34568999999999999998888899999999997654 2467999999999999999999998643 367999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC-CceEEEe
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE-PREMTLD 363 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~ 363 (538)
||++..+++++||++.++|+++.... ....|++
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 99999999999999999999996553 3444554
No 68
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=2.5e-17 Score=137.94 Aligned_cols=99 Identities=23% Similarity=0.484 Sum_probs=87.5
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
.|.|+|++|+||+. .+.+||||+++++++.++|++++++.||+|||.|+|.+.++ ..+.|.|+|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence 37899999999986 36899999999999999999999999999999999999874 56789999999862
Q ss_pred CCccEEEEEecchhcccc--eeceEEEcCCCC
Q 046405 496 KETLGYIGINLADVVNNK--RINEKYHLIDSK 525 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~ 525 (538)
+++||++.++|.++..+. ..++||+|.+.+
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 789999999999998754 579999998653
No 69
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.6e-17 Score=143.72 Aligned_cols=109 Identities=28% Similarity=0.357 Sum_probs=91.2
Q ss_pred CCceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 34568999999999999998875 899999999997554 3456999999999999999999998643 256899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC---CceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE---PREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~l 364 (538)
||++.++++++||++.|+|+++.... ....|++|
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999999999999999999996542 34466654
No 70
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=2.9e-17 Score=142.26 Aligned_cols=114 Identities=23% Similarity=0.405 Sum_probs=94.9
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.+ .+++
T Consensus 2 ~G~l~~~l~~~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k 56 (125)
T cd04031 2 TGRIQIQLWYDKV-------------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR 56 (125)
T ss_pred cEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence 5999999999865 7899999999999976 35799999999965 4569
Q ss_pred eecccCCCCCcCcceEEEEecCCC--CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
|++++++.||+|||.|+|.+.... ....|.++|||++. ++++++||++.++|++... ....+||+|+
T Consensus 57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 999999999999999999864321 24689999999975 5678999999999999433 3347999985
No 71
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.73 E-value=2.8e-17 Score=141.14 Aligned_cols=107 Identities=25% Similarity=0.341 Sum_probs=90.4
Q ss_pred eeccccccc-ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC-CC
Q 046405 245 EVQIMDPAK-AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD-PE 322 (538)
Q Consensus 245 ~~pl~~~~~-~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~ 322 (538)
..|++++.. ......|.|+|+|++|++|+. +..+.+||||+++++++ +++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 356666554 347789999999999999984 66788999999999766 3599999999999999999997533 34
Q ss_pred CCeEEEEEEecCCCCCCCccEEEEEeCccCCCC
Q 046405 323 YQALELQVYDWEKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 323 ~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
.+.|+|+|||++..++|++||++.+++.....+
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 689999999999999999999999999977643
No 72
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=4.8e-17 Score=140.25 Aligned_cols=118 Identities=30% Similarity=0.501 Sum_probs=96.2
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC--C
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH--H 339 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~--d 339 (538)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999643 24699999999999999999999965 6799999999998765 5
Q ss_pred CccEEEEEeCccCCCCC-CceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEE-PREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
++||++.+++.++.... ....|+++.+ ..+ ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~-~~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRK-LKK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeec-CCC--CCCceEeeEEEEEe
Confidence 79999999999997654 3356777633 111 12356689988876
No 73
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.3e-17 Score=138.61 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=89.4
Q ss_pred eEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCC
Q 046405 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKE 497 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~ 497 (538)
+.|.|+|++|++|+..+..||||++.+++.+.+|++.++ .||.|||.|.|.+.+. ...|.|+|||++. .+|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCCC
Confidence 589999999999998878899999999998889999988 5999999999999763 3559999999873 4899
Q ss_pred ccEEEEEecchhcccce--eceEEEcCCC---CCeEEE
Q 046405 498 TLGYIGINLADVVNNKR--INEKYHLIDS---KNGRIQ 530 (538)
Q Consensus 498 ~lG~~~i~L~~l~~~~~--~~~~~~L~~~---~~G~i~ 530 (538)
+||++.|+|+++..+.. ..+||+|... +.|++.
T Consensus 74 ~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~ 111 (127)
T cd08394 74 LVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIV 111 (127)
T ss_pred ceEEEEEEhHHcccCCCCCCCccEecChHHhccCCeEe
Confidence 99999999999996543 4899999732 355553
No 74
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=5.5e-17 Score=140.87 Aligned_cols=117 Identities=33% Similarity=0.508 Sum_probs=99.8
Q ss_pred EEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCCCCCCccE
Q 046405 266 VLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKVGHHDKMG 343 (538)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~~~d~~lG 343 (538)
|++|++|+. ..|.+||||++++++.. ++|++++++.||+|||+|.|.+..+ ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 67899999999997654 4999999999999999999999754 4688999999999999999999
Q ss_pred EEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecC
Q 046405 344 MNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKG 393 (538)
Q Consensus 344 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
++.++++++..+.....|++|... ......|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988777888887431 12335799999999998743
No 75
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=2.9e-17 Score=142.66 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=99.2
Q ss_pred cccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc-----CeeE
Q 046405 378 SRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR-----GEEK 449 (538)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~ 449 (538)
+.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. ..++
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~ 55 (127)
T cd04030 1 PLGRIQLTIRYSSQ-------------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55 (127)
T ss_pred CCeEEEEEEEEeCC-------------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence 36999999999865 78899999999999863 579999999995 3467
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+|++++++.||+|||.|.|.+.... ....|.+.|||++..+ .+++++||++.++|.++..+....+||+|+
T Consensus 56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~--~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFL--SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCccc--CCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999999999999999986431 2368999999987410 157899999999999998777789999984
No 76
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=3.5e-17 Score=141.55 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=98.7
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC---eeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG---EEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~ 452 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.+ +.++|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08385 2 LGKLQFSLDYDFQ-------------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK 56 (124)
T ss_pred ccEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence 6999999999865 7899999999999986 35789999999853 356999
Q ss_pred cccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.++|+++..+...++||+|.
T Consensus 57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999999999999999986421 23589999999975 578899999999999998777789999985
No 77
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=9.7e-17 Score=140.28 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=98.3
Q ss_pred CceEEEEEEeeeccCCCC-------------CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEE
Q 046405 416 GGGLLVVILHEAQDVEGK-------------YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHV 481 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v 481 (538)
..|.|+|+|++|+||... +.+||||++.++++. .+|++++++.||.|||.|+|.+.+ ...+.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~ 78 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLEL 78 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEE
Confidence 368999999999999752 358999999999866 599999999999999999999964 368999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcc--cceeceEEEcCCCCCeEEEEEEEEEe
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVN--NKRINEKYHLIDSKNGRIQIELQWRA 537 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~~~G~i~l~~~wkp 537 (538)
.|+|++. ++.+++||++.++|+++.. +...+.||+|. +.|+|+|+++|+.
T Consensus 79 ~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAA----IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCC----CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 9999874 5678999999999999987 45679999997 5899999999985
No 78
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=4.2e-17 Score=141.29 Aligned_cols=109 Identities=36% Similarity=0.553 Sum_probs=94.4
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC---CCCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD---PEYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d 332 (538)
....+.|+|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 44568999999999999999988999999999996544445799999999999999999997532 234679999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++..+++++||++.++++++..++....|+.|
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 99999999999999999999988888888876
No 79
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.73 E-value=5.6e-17 Score=139.18 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=94.8
Q ss_pred EEEEEeeeccCCCC----CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 420 LVVILHEAQDVEGK----YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 420 L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|.|.+|+||+.. +.+||||+++++++ ..+|+++++|.||+|||.|+|.+.+. ...|.|.|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence 67899999999863 46899999999775 46999999999999999999999752 4689999999985 57
Q ss_pred CCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 495 PKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
+|++||.+.++++++..+...+.||+|+... +|+|+|++.+
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 8999999999999998777778999998532 6999998764
No 80
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=1.8e-17 Score=141.63 Aligned_cols=106 Identities=24% Similarity=0.309 Sum_probs=88.8
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWE 334 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~ 334 (538)
..+.|.|+|++|+||+.++ .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3589999999999999988 7899999999997643 23568999999999999999999985432 357899999998
Q ss_pred CCC-CCCccEEEEEeCccCCCCCCceEEEec
Q 046405 335 KVG-HHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 335 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
..+ ++++||++.+++.++..++....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 775 478999999999999877666677653
No 81
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=3e-17 Score=137.40 Aligned_cols=99 Identities=30% Similarity=0.485 Sum_probs=87.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|.|+|++|++|+..+..+.+||||+++++++ .++|++++++.||.|||.|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 38999999999999988899999999999874 3589999999999999999999988777899999999975 88
Q ss_pred ccEEEEEeCccCCCCC--CceEEEecc
Q 046405 341 KMGMNVIPLKDITPEE--PREMTLDLL 365 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~--~~~~~~~l~ 365 (538)
+||++.++|.++.... ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999998654 456788773
No 82
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.72 E-value=3.6e-17 Score=140.28 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=94.0
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC------eeEEe
Q 046405 381 QVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG------EEKKT 451 (538)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~kT 451 (538)
+|.+++.|.|. .+.|.|+|++|+||+. .+.+||||++++-. .++||
T Consensus 2 ~i~~sL~Y~~~-------------------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT 56 (124)
T cd08680 2 QVQIGLRYDSG-------------------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT 56 (124)
T ss_pred eEEEEEEECCC-------------------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence 68899999865 7899999999999976 36799999999831 35699
Q ss_pred ecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc-ceeceEEEc
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN-KRINEKYHL 521 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 521 (538)
++++++.||+|||.|+|.+.... ....|.+.||+.+. ++++++||.+.|+|+++... +....||+|
T Consensus 57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999987432 24589999999974 57899999999999999544 457889986
No 83
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=5e-17 Score=137.47 Aligned_cols=99 Identities=22% Similarity=0.420 Sum_probs=87.6
Q ss_pred CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc
Q 046405 434 YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 434 ~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~ 512 (538)
|.+||||+++++++ ..+|++++++.||+|||.|+|.+.+. ..+.|.|+|+|++. + +|++||++.++|+++...
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLIDA 84 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHhh
Confidence 67999999999875 46999999999999999999999874 45789999999975 5 799999999999999764
Q ss_pred -ceeceEEEcCCCCCeEEEEEEEEEeC
Q 046405 513 -KRINEKYHLIDSKNGRIQIELQWRAS 538 (538)
Q Consensus 513 -~~~~~~~~L~~~~~G~i~l~~~wkp~ 538 (538)
....+||+|.+.++|+|+++++|+|+
T Consensus 85 ~~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TSVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hhccceeEECCCCCCCEEEEEEEEecC
Confidence 44689999998789999999999996
No 84
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.72 E-value=6.8e-17 Score=145.64 Aligned_cols=128 Identities=19% Similarity=0.285 Sum_probs=101.4
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc-----CeeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR-----GEEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~k 450 (538)
+|+|.+++.|.|...+.. +.......|.|.|+|++|+||+.. +.+||||++++. ..++|
T Consensus 1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k 67 (162)
T cd04020 1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67 (162)
T ss_pred CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence 599999999999754321 111234689999999999999863 579999999983 24579
Q ss_pred eecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
|++++++.||.|||.|.|.+... .....|.|+|||++. ++++++||++.++++++...+....||.+.+
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99999999999999999986421 123479999999985 5689999999999999876655677777754
No 85
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=3.7e-17 Score=141.03 Aligned_cols=109 Identities=31% Similarity=0.400 Sum_probs=94.9
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEE-EeC--CCCCeEEEEEE
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV-VKD--PEYQALELQVY 331 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v~ 331 (538)
.....+.|.|+|++|+||+..+..|.+||||++.+.+....+++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 34556899999999999999998889999999998666556679999888 999999999998 542 23678999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.++++++||++.++|+++..++....|++|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999999999999999999888888888876
No 86
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=4.8e-17 Score=140.49 Aligned_cols=109 Identities=28% Similarity=0.420 Sum_probs=92.9
Q ss_pred CCceeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....|.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 446789999999999999988 67899999999985432 2457999999999999999999998643 256899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.++++++..+.....|++|
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999999999999999877667777764
No 87
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.72 E-value=6.7e-17 Score=140.42 Aligned_cols=109 Identities=29% Similarity=0.367 Sum_probs=93.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 331 (538)
....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 34568999999999999999988999999999996532 3457999999999999999999998543 3578999999
Q ss_pred ecCCC--CCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKV--GHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.. ++|++||++.+++.++..++....|++|
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99875 6899999999999999887777788876
No 88
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.2e-16 Score=138.69 Aligned_cols=115 Identities=27% Similarity=0.492 Sum_probs=95.1
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC----
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV---- 336 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~---- 336 (538)
.|+|+|++|++|+..|..|.+||||++++++.. ++|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999997543 5899999999999999999998655 56899999999852
Q ss_pred -------CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 337 -------GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 337 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4799999999999988643 45788775432 2356799999864
No 89
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=5e-17 Score=144.06 Aligned_cols=106 Identities=36% Similarity=0.540 Sum_probs=91.1
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC--------------------------CceeeeecCCCCC
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL--------------------------PSKKTTVKHRNLN 307 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~~T~v~~~t~n 307 (538)
....+.+.|.|+|++|++|...|..|.+||||++.+.+... ..++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 45678999999999999999999999999999999964311 2368999999999
Q ss_pred ceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 308 PEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 308 P~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|.|||+|.|.+.++..+.|.|+|||++ |++||++.++++++.. ...+.|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 8899999999999984 345677754
No 90
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=9.7e-17 Score=136.38 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=85.8
Q ss_pred EEEEEEeeeccCCCC--CCCCCeEEEEEcC-------eeEEeecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEcc
Q 046405 419 LLVVILHEAQDVEGK--YHTNPSARILFRG-------EEKKTKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTS 487 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~ 487 (538)
.|+|+|++|+||+.. |.+||||++++.+ ++++|+++.++.||+|||.|+|.+.+. +....|.|.|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 489999999999874 6899999999832 235899999999999999999999753 22346999999987
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
. .++|++||++.++|+++..++....|++|...
T Consensus 81 ~----~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 F----ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred c----cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 4 46789999999999999988888999999754
No 91
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=9.2e-17 Score=139.14 Aligned_cols=108 Identities=31% Similarity=0.468 Sum_probs=89.5
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v 330 (538)
....|.|+|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 34568999999999999999888999999999996532 2356899999999999999999986442 357899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.++|++... .....|++|
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 999999999999999999998332 334567765
No 92
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.5e-16 Score=137.57 Aligned_cols=114 Identities=18% Similarity=0.357 Sum_probs=96.7
Q ss_pred eEEEEEEeeeccCCCC----CCCCCeEEEEEcC--eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCC
Q 046405 418 GLLVVILHEAQDVEGK----YHTNPSARILFRG--EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMG 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g 491 (538)
|.|+|+|++|+||+.. +.+||||++++++ ..++|++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 4689999999988 67899999999999999999999873 46799999999975
Q ss_pred CCCCCCccEEEEEecchhcccceece-EEEcCC--CCCeEEEEEEEEEe
Q 046405 492 LLHPKETLGYIGINLADVVNNKRINE-KYHLID--SKNGRIQIELQWRA 537 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~L~~--~~~G~i~l~~~wkp 537 (538)
.++|++||+++++|.++..+..... ++.+.. ...|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 4688999999999999998765543 444443 24799999999987
No 93
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=2.1e-16 Score=137.18 Aligned_cols=111 Identities=23% Similarity=0.463 Sum_probs=97.5
Q ss_pred EeeeccCCC-CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCC-CCCCeEEEEEEEccCCCCCCCCCCccEE
Q 046405 424 LHEAQDVEG-KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEP-PTDDKLHVEVISTSSRMGLLHPKETLGY 501 (538)
Q Consensus 424 v~~a~~L~~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~~l~v~V~d~~~~~g~~~~d~~lG~ 501 (538)
|++|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+... ...+.|.++|||++. +++|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence 678999987 56899999999999999999999999999999999999764 245789999999975 467899999
Q ss_pred EEEecchhcccceeceEEEcCCC----CCeEEEEEEEEEeC
Q 046405 502 IGINLADVVNNKRINEKYHLIDS----KNGRIQIELQWRAS 538 (538)
Q Consensus 502 ~~i~L~~l~~~~~~~~~~~L~~~----~~G~i~l~~~wkp~ 538 (538)
+.++|+++..+.....|++|.+. ..|+|+++++|.|+
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 99999999988888999999754 25999999999985
No 94
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=1.4e-16 Score=137.64 Aligned_cols=110 Identities=29% Similarity=0.424 Sum_probs=95.4
Q ss_pred cCCceeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEE
Q 046405 255 MQKPVGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVY 331 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~ 331 (538)
.....+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+.... ...|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 3456789999999999999988 6788999999999654444568999999999999999999986432 457999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++..+++++||++.++|.++........|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 999988999999999999999988888889886
No 95
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.70 E-value=2.2e-16 Score=141.87 Aligned_cols=113 Identities=21% Similarity=0.410 Sum_probs=95.5
Q ss_pred ceEEEEEEeeeccCCC---------------------------------CCCCCCeEEEEEcCee-EEeecccCCCCCcC
Q 046405 417 GGLLVVILHEAQDVEG---------------------------------KYHTNPSARILFRGEE-KKTKRIKKNRDPRW 462 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---------------------------------~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w 462 (538)
-|.|.|+|++|++|+. .+.+||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 4788888888888864 2347999999998866 49999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC------CCeEEEEEEEEE
Q 046405 463 EEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS------KNGRIQIELQWR 536 (538)
Q Consensus 463 ne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~wk 536 (538)
||.|+|.+... .+.|.++|+|++. + ++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998753 4689999999874 3 468999999999999987778999999764 258999999984
No 96
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.70 E-value=2e-16 Score=136.53 Aligned_cols=110 Identities=26% Similarity=0.451 Sum_probs=95.1
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
+|+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||.|.|.+... ....|.|+|||++. +++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence 489999999999763 4789999999999889999999999999999999999874 45789999999975 567
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCC---------CCeEEEEEE
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDS---------KNGRIQIEL 533 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---------~~G~i~l~~ 533 (538)
+++||++.++|+++........||.|... ..|.|++.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 89999999999999876667899999852 248888875
No 97
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=3e-17 Score=143.13 Aligned_cols=115 Identities=22% Similarity=0.404 Sum_probs=93.8
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC-----CCCCCeEEEEEcCe-----e
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK-----YHTNPSARILFRGE-----E 448 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~-----~~~dpyv~v~~~~~-----~ 448 (538)
.|+|.++++|.|. .+.|.|+|++|+||... +.+||||++++... +
T Consensus 1 ~Gel~~sL~Y~~~-------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k 55 (138)
T cd08407 1 TGEVLLSISYLPA-------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK 55 (138)
T ss_pred CCEEEEEEEEeCC-------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence 4999999999986 78899999999999763 34899999998642 4
Q ss_pred EEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 449 KKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
+||++++++.||+|||.|.|.+..... +..|.++|+|++. ++++++||++.+++.. .+....+|..+..+
T Consensus 56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 599999999999999999999975322 4579999999985 6789999999999975 33345666665544
No 98
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.70 E-value=1.6e-16 Score=137.26 Aligned_cols=113 Identities=20% Similarity=0.332 Sum_probs=95.8
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC----CCCCCCeEEEEEcC-----eeEE
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG----KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~k 450 (538)
|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++.. .+++
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (123)
T cd08521 1 GEIEFSLSYNYK-------------------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK 55 (123)
T ss_pred CeEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence 899999999754 7899999999999975 35799999999842 3469
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
|++++++.||+|||.|.|.+.... ....|.++|||++. ++++++||++.++|+++..+...+.||+|
T Consensus 56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999987532 14589999999875 56889999999999999776677999987
No 99
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=7.7e-17 Score=136.12 Aligned_cols=101 Identities=28% Similarity=0.417 Sum_probs=87.0
Q ss_pred EEEEEEEecCCCcCCC-CCCCCcEEEEEEcCCCCCceeeeecCCCCCcee-eeEEEEEEeCCC--CCeEEEEEEecCCCC
Q 046405 262 LNVKVLRAMKLKKKDL-IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEW-NEEFGLVVKDPE--YQALELQVYDWEKVG 337 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~--~~~L~v~v~d~~~~~ 337 (538)
|.|+|++|++|+.++. .|.+||||++++++. .+||++++++.||.| ||+|.|.+.... .+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998884 688999999999863 459999999999999 999999997542 468999999999999
Q ss_pred CCCccEEEEEeCccCCCC---CCceEEEecc
Q 046405 338 HHDKMGMNVIPLKDITPE---EPREMTLDLL 365 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~---~~~~~~~~l~ 365 (538)
+|++||++.+++.++... .....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3456777764
No 100
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=2.9e-16 Score=135.98 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=97.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc---CeeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR---GEEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~---~~~~kT~ 452 (538)
.|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++. +...+|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~ 56 (125)
T cd08386 2 LGRIQFSVSYDFQ-------------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK 56 (125)
T ss_pred ccEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence 6999999999754 6789999999999976 3579999999993 4557999
Q ss_pred cccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||.|||.|.|.+... .....|.++|||++. ++++++||++.++|+++......+.||+|+
T Consensus 57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999999999975321 123579999999985 567899999999999998777789999986
No 101
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=1.3e-16 Score=143.89 Aligned_cols=109 Identities=30% Similarity=0.347 Sum_probs=92.8
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v 330 (538)
..+.|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 4578999999999999999998899999999998532 23457999999999999999999985322 246799999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++.+++|++||++.+++.++........|+.+
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999876666677665
No 102
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.69 E-value=2e-16 Score=136.48 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=96.3
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC---eeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG---EEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 452 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +..||||++.+.. .++||+
T Consensus 2 ~G~l~~sl~Y~~~-------------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk 56 (124)
T cd08389 2 CGDLDVAFEYDPS-------------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK 56 (124)
T ss_pred CEEEEEEEEECCC-------------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence 6999999999865 78899999999999863 5789999988733 356999
Q ss_pred cccCCCCCcCcceEEEE-ecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFT-LEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
++++ .||+|||.|.|. +.... ....|.++|+|+++ ++++++||.+.|+|+++..++....||+|+
T Consensus 57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9888 999999999998 54321 24579999999975 578999999999999998777789999996
No 103
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.69 E-value=1e-16 Score=139.29 Aligned_cols=92 Identities=24% Similarity=0.445 Sum_probs=84.4
Q ss_pred CceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..|.|+|.|.+|.||..+ +++||||.+.+++++.||+++++++||+|||.|+|.+.++ +..|.++|||+|+
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---- 77 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---- 77 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence 469999999999999763 6899999999999999999999999999999999999985 5789999999997
Q ss_pred CCCCCccEEEEEecchhcccc
Q 046405 493 LHPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~ 513 (538)
+++|++||.++|+|..+++..
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCcccccceeeeccHHHHHHh
Confidence 789999999999999987654
No 104
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.69 E-value=1.1e-16 Score=138.40 Aligned_cols=103 Identities=32% Similarity=0.532 Sum_probs=90.5
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCC---CCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDP---EYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~~~ 335 (538)
|.|.|+|++|++|+..+..+.+||||+++++++. ++|++.. ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999997654 3788777 489999999999999876 25789999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+++|++||++.+++.++..++..+.|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999999877777787764
No 105
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=3.6e-16 Score=133.31 Aligned_cols=113 Identities=39% Similarity=0.622 Sum_probs=96.8
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|+|+|++|++|+..+..+.+||||++.+.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997533 3699999999999999999999977667889999999999889999
Q ss_pred cEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEE
Q 046405 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVV 383 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~ 383 (538)
||++.+++.++..+.....|++|.. +++...|.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence 9999999999998878888888743 1245566654
No 106
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=1.7e-16 Score=134.24 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=83.9
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
+|.|.|+|++|++|+..+ ..||||++.+++++ .+|++.++ .||.|||+|.|.+.+. ...|.|+|||+|.+ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-C
Confidence 478999999999997654 45999999998754 48888877 4999999999999775 45599999999855 8
Q ss_pred CCccEEEEEeCccCCCCCCc--eEEEeccccC
Q 046405 339 HDKMGMNVIPLKDITPEEPR--EMTLDLLKNM 368 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~ 368 (538)
||+||++.++|.++..++.. ..|++|....
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999999866544 6788876543
No 107
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=1.4e-16 Score=138.02 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=95.5
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCC----CCeEEEEEEecCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPE----YQALELQVYDWEK 335 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~ 335 (538)
+|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||.|.|.+.... ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999888999999999998722 34888875 5899999999999997763 6789999999998
Q ss_pred CCCCCccEEEEEeCccCCCCCC-----ceEEEeccccCCCCCCCCCccccEEEE
Q 046405 336 VGHHDKMGMNVIPLKDITPEEP-----REMTLDLLKNMDPNDTRNEKSRGQVVV 384 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (538)
+++|++||++.+++.++..+.. +..|++|... +++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999987654 3567776431 2677888874
No 108
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=7.3e-16 Score=136.35 Aligned_cols=124 Identities=20% Similarity=0.289 Sum_probs=97.3
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCCceeeeecCCCCCceeeeEEEEEEeCCC--------CCeEEEE
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--------YQALELQ 329 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~ 329 (538)
|.|.|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 455555444445778777789999999997 334445679999999999999999999996431 4579999
Q ss_pred EEecCCC-CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 330 VYDWEKV-GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 330 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
|||++.+ ++|++||++.++|+.+..+.....+++|... .....|+|++++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999876 5799999999999999887666678887531 2456789999987753
No 109
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=2e-16 Score=132.57 Aligned_cols=92 Identities=12% Similarity=0.264 Sum_probs=81.1
Q ss_pred eEEEEEEeeeccCCCC-------CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC
Q 046405 418 GLLVVILHEAQDVEGK-------YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM 490 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~ 490 (538)
|+|.|+|++|+||+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 7899999999999862 2489999999998889999999999999999999999764444579999999985
Q ss_pred CCCCCCCccEEEEEecchhcccc
Q 046405 491 GLLHPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~ 513 (538)
+++|++||++.++|+++..+.
T Consensus 79 --~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 --FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCCCcceEEEEEEHHHHHhhC
Confidence 578999999999999998754
No 110
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.69 E-value=6e-16 Score=132.79 Aligned_cols=110 Identities=25% Similarity=0.412 Sum_probs=95.4
Q ss_pred eEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 418 GLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 418 g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|+|+|++|+||+. .+.+||||++++++...+|++++++.||.|||.|.|.+.+ ..+.+.++|||++. ++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~----~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK----DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCC----CC
Confidence 689999999999986 3578999999999888999999999999999999999875 35789999999975 46
Q ss_pred CCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEE
Q 046405 495 PKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 535 (538)
++++||++.+++.++..+. .+||+|.+. .+|+|.+++++
T Consensus 75 ~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 7899999999999986543 689999754 27999999875
No 111
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.69 E-value=1.2e-16 Score=137.22 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=94.7
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----eeEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 451 (538)
.+|.++++|.|. .|+|+|+|++|+||+.. +.+||||++++-. +++||
T Consensus 1 ~el~~sL~Y~p~-------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT 55 (135)
T cd08692 1 AELQLGTCFQAV-------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKT 55 (135)
T ss_pred CeEEEEeeecCc-------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecC
Confidence 378999999987 89999999999999874 4569999999842 35699
Q ss_pred ecccCCC-CCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEE
Q 046405 452 KRIKKNR-DPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 452 ~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 529 (538)
+++++|. ||+|||.|.|.+.....+-.+.|+|+|+++ ++++++||++.++.+.. .....++|.+...+++-.|
T Consensus 56 ~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 56 RLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred ccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 9999995 699999999999864333478889999875 57899999999999863 2233578877665544433
No 112
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.69 E-value=7e-17 Score=140.92 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=94.5
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----eEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----EKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT 451 (538)
|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++... ++||
T Consensus 2 G~i~~sL~Y~~~-------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT 56 (136)
T cd08406 2 GEILLSLSYLPT-------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKT 56 (136)
T ss_pred cEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCC
Confidence 899999999876 6789999999999986 357899999999432 4589
Q ss_pred ecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
++++++.||+|||.|.|.+.... ....|.|+|+|++. ++++++||++.|+... .+....+|+.+..++
T Consensus 57 ~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~ 125 (136)
T cd08406 57 SVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASL 125 (136)
T ss_pred ccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCC--CChhHHHHHHHHHCC
Confidence 99999999999999999987532 24579999999985 5789999999998764 344567888776654
No 113
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=2.8e-16 Score=134.61 Aligned_cols=103 Identities=28% Similarity=0.480 Sum_probs=90.4
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
|+|+|+|++|++|+..+..|.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999997542 35899999999999999999998765 57899999999999999
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccc
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++||++.+++.++..+ ..+.|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999887 5566666644
No 114
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=3.9e-16 Score=135.32 Aligned_cols=115 Identities=20% Similarity=0.301 Sum_probs=94.5
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---C-CCCCCeEEEEEcC---eeEEe
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---K-YHTNPSARILFRG---EEKKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT 451 (538)
.|+|.+++.|.+. .+.|+|+|++|+||+. . +.+||||++++.. ++.||
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT 56 (128)
T cd08388 2 LGTLFFSLRYNSE-------------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKT 56 (128)
T ss_pred CeEEEEEEEEECC-------------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeec
Confidence 6999999999864 6899999999999986 2 5789999999853 34699
Q ss_pred ecccCCCCCcCcceEEEE-ecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc--ceeceEEEcC
Q 046405 452 KRIKKNRDPRWEEEFQFT-LEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN--KRINEKYHLI 522 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~ 522 (538)
++++++.||+|||.|.|. +.... ....|.++|||++. +++|++||++.++|+++.-. +....|.+|+
T Consensus 57 ~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 57 RVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred cEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999999999999999994 43211 23479999999875 67899999999999998643 5678888875
No 115
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=1.7e-16 Score=140.25 Aligned_cols=102 Identities=25% Similarity=0.274 Sum_probs=85.4
Q ss_pred EEEEEEeeeccCCC-CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecC-----------C---CCCCe
Q 046405 419 LLVVILHEAQDVEG-KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEE-----------P---PTDDK 478 (538)
Q Consensus 419 ~L~v~v~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~---~~~~~ 478 (538)
.|.|+|++|+||+. .|.+||||++++.+ .+++|++++++.||+|||.|+|.+.. + .....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 37899999999987 35799999999976 45699999999999999999999951 0 11247
Q ss_pred EEEEEEEccCCCCCCCCCCccEEEEEecchhccc-ceeceEEEcCCC
Q 046405 479 LHVEVISTSSRMGLLHPKETLGYIGINLADVVNN-KRINEKYHLIDS 524 (538)
Q Consensus 479 l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~~ 524 (538)
|.|+|||++. +++|++||++.|+|.++... .....||+|...
T Consensus 81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEcCCC----CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 8999999975 46899999999999999876 567899999653
No 116
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=5.7e-17 Score=141.38 Aligned_cols=107 Identities=25% Similarity=0.352 Sum_probs=88.4
Q ss_pred CceeEEEEEEEEecCCCcCCC--CCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
...|.|.|+|++|+||...+. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+... ....|.|+|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 346889999999999999873 355899999999764 34467999999999999999999998643 357799999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||+|.++++++||++.+++.. .+++.++|.++.
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999999999999999999975 344555666553
No 117
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.3e-16 Score=138.66 Aligned_cols=107 Identities=19% Similarity=0.303 Sum_probs=91.0
Q ss_pred EEEEEEeeeccCCCC-----------------CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEE
Q 046405 419 LLVVILHEAQDVEGK-----------------YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHV 481 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~-----------------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v 481 (538)
.|.|+|++|++|+.. +.+||||++.+++++.||++++++.||+|||.|.|.+..++..+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999863 258999999999999999999999999999999999865445678999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcccce-------eceEEEcCCCCCeEE
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVNNKR-------INEKYHLIDSKNGRI 529 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~-------~~~~~~L~~~~~G~i 529 (538)
+|||++. +++|++||++.++|.++...+. ...|+.|.+++.+..
T Consensus 81 ~v~D~d~----~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 81 QIRDWDR----VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEEECCC----CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 9999985 5689999999999999887542 369999998765543
No 118
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.68 E-value=2.6e-16 Score=132.92 Aligned_cols=101 Identities=23% Similarity=0.408 Sum_probs=87.4
Q ss_pred EEEEEeeeccCCC----CCCCCCeEEEEEcCeeEEeecccCCCCCcC-cceEEEEecCCCC-CCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEG----KYHTNPSARILFRGEEKKTKRIKKNRDPRW-EEEFQFTLEEPPT-DDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|++|+||+. .+.+||||++++++..+||++++++.||.| ||.|.|.+..... .+.|.|+|||++. +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence 5799999999975 246899999999998899999999999999 9999999976422 3689999999975 5
Q ss_pred CCCCccEEEEEecchhcc---cceeceEEEcCCC
Q 046405 494 HPKETLGYIGINLADVVN---NKRINEKYHLIDS 524 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~ 524 (538)
+++++||++.+++.++.. +...+.||+|.++
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~ 110 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYDT 110 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence 788999999999999988 3458999999863
No 119
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.68 E-value=1e-15 Score=133.37 Aligned_cols=118 Identities=25% Similarity=0.398 Sum_probs=94.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC----------CceeeeecCCCCCcee-eeEEEEEEeCCCCCeEEEE
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL----------PSKKTTVKHRNLNPEW-NEEFGLVVKDPEYQALELQ 329 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~ 329 (538)
+..|++++|+||+ ++..|++||||++++.+... +.++|+++++++||+| ||+|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 67789999999999965332 3579999999999999 9999999853 5789999
Q ss_pred EEecCCCCC---CCccEEEEEeCccCCCCC---CceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 330 VYDWEKVGH---HDKMGMNVIPLKDITPEE---PREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 330 v~d~~~~~~---d~~lG~~~i~l~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
|||++..++ +++||++.+++.++..+. ....++++.++. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999865443 799999999999998663 244666665432 2467889998875
No 120
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=2.3e-16 Score=139.03 Aligned_cols=93 Identities=41% Similarity=0.699 Sum_probs=85.1
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
.|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.++|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999998887 899999999998654 5999999999999999999999877 7889999999999999
Q ss_pred CCccEEEEEeCccCCCCC
Q 046405 339 HDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~ 356 (538)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999998653
No 121
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=1.5e-16 Score=138.78 Aligned_cols=107 Identities=26% Similarity=0.294 Sum_probs=88.2
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d 332 (538)
...+.|.|+|++|+||+..+..|.+||||++++.+. ...++||++++++.||+|||+|.|.+.. .....|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 346789999999999999988899999999999543 3335689999999999999999999864 346789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+|..+++++||++.++... .++..+.|.++.
T Consensus 92 ~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 92 STEDGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred CCCCCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 9999999999999997764 344455555543
No 122
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=2.3e-16 Score=136.09 Aligned_cols=93 Identities=34% Similarity=0.537 Sum_probs=83.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
+|+|+|++|++|+..+..|.+||||++++++... ..+|++++++.||.|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4899999999999999889999999999987653 357888889999999999999987776789999999999999999
Q ss_pred ccEEEEEeCccCCC
Q 046405 341 KMGMNVIPLKDITP 354 (538)
Q Consensus 341 ~lG~~~i~l~~l~~ 354 (538)
+||++.+++++..-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999997764
No 123
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.67 E-value=6.1e-16 Score=135.10 Aligned_cols=120 Identities=23% Similarity=0.460 Sum_probs=102.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 450 (538)
+|+|++++.|. .+.|+|+|++|+||+. .+..||||++.+.+ ..++
T Consensus 1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r 53 (131)
T cd04026 1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK 53 (131)
T ss_pred CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence 58999999885 4789999999999986 35789999999963 4579
Q ss_pred eecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEE
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 530 (538)
|++++++.||.|||.|.|.+........|.++|||++. ++++++||++.++|.++... ....||+|.+.+.|+..
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~~ 128 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEYY 128 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-ccCceEECcCccccccc
Confidence 99999999999999999998764345689999999874 56889999999999999865 56899999998888653
No 124
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=3.3e-16 Score=138.67 Aligned_cols=93 Identities=33% Similarity=0.581 Sum_probs=81.6
Q ss_pred EEEEEEEEecCCCcCCCCC--------------CCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-CCe
Q 046405 261 ILNVKVLRAMKLKKKDLIG--------------ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQA 325 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~ 325 (538)
.|.|+|++|++|+.+|..+ .+||||++.++++.. +|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~---kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee---ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 689999999987654 8999999999999999999976543 578
Q ss_pred EEEEEEecCCCCCCCccEEEEEeCccCCCCC
Q 046405 326 LELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 326 L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
|.|+|||+|..++|++||++.+++.++...+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
No 125
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=6.6e-16 Score=133.36 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=96.8
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEc---CeeEEee
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFR---GEEKKTK 452 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~---~~~~kT~ 452 (538)
|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. ...++|+
T Consensus 1 G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~ 55 (123)
T cd08390 1 GRLWFSVQYDLE-------------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55 (123)
T ss_pred CEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence 899999999864 78999999999999753 468999999984 3456999
Q ss_pred cccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+..... ...|.|+|||++. ++++++||++.++|+++........|++|.
T Consensus 56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999999999999999864322 3579999999875 567899999999999998877778999986
No 126
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.67 E-value=1.9e-16 Score=139.01 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC--CCCCCeEEEEEcC-----eeEEe
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK--YHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT 451 (538)
.|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.. ++++|
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT 55 (137)
T cd08409 1 LGDIQISLTYNPT-------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT 55 (137)
T ss_pred CcEEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence 4999999999875 68899999999999763 5799999999854 35699
Q ss_pred ecccCCCCCcCcceEEEEecCCCCC-CeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCe
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPPTD-DKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 527 (538)
++++++.||+|||.|.|.+...+.. ..|.|+|+|++. ++++++||++.++......+....+|+.+..+++.
T Consensus 56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~ 128 (137)
T cd08409 56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKE 128 (137)
T ss_pred ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCC
Confidence 9999999999999999999743333 589999999985 56889999999997665555556788887765443
No 127
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.67 E-value=2.4e-16 Score=138.02 Aligned_cols=109 Identities=36% Similarity=0.444 Sum_probs=90.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 331 (538)
....|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 3457899999999999999998899999999999653 23457999999999999999999998643 3568999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
|++..++|++||++.+++.. .++....|+++.+
T Consensus 89 d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred eCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99998899999999999986 3344556776543
No 128
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.67 E-value=1.4e-15 Score=133.10 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=97.9
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
..-|.|.|.+|++|+.+ .+|||++.+++... ||+++.++.||.|+|.|.|.+... ...++|.|+..+...+...+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 45789999999999985 58999999999886 999999999999999999986542 36799999766532221226
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCC-------------CeEEEEEEEEEeC
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSK-------------NGRIQIELQWRAS 538 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-------------~G~i~l~~~wkp~ 538 (538)
+++||.+.|++.++..+...++||+|.+.. .++|+++++|+|+
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 799999999999999888899999998642 2699999999874
No 129
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.66 E-value=1.2e-15 Score=131.18 Aligned_cols=109 Identities=18% Similarity=0.338 Sum_probs=92.5
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|+|++|++|+. .+.+||||++.++++. .||++++++.||.|||.|.|.+.. ....|.++|||++. +++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~----~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDT----LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCC----CCC
Confidence 7899999999976 3578999999998764 599999999999999999999865 34689999999985 578
Q ss_pred CCccEEEEEecchhcccc-eeceEEEcCCCC-----CeEEEEEEE
Q 046405 496 KETLGYIGINLADVVNNK-RINEKYHLIDSK-----NGRIQIELQ 534 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~G~i~l~~~ 534 (538)
|++||++.++++++.... ..++|++|.+.. .|+|++++.
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999999999887643 478999997632 699988764
No 130
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.66 E-value=5.2e-16 Score=136.08 Aligned_cols=108 Identities=27% Similarity=0.396 Sum_probs=92.3
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCC-CCCceeeeecCCCCCceeeeEEEEEEeCC---------------CCCe
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDD-KLPSKKTTVKHRNLNPEWNEEFGLVVKDP---------------EYQA 325 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~ 325 (538)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 7789999999999741 12346999999999999999999998765 4578
Q ss_pred EEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCC
Q 046405 326 LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDP 370 (538)
Q Consensus 326 L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~ 370 (538)
|.|+|||++..+++++||++.+++.++........|++|.+...+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 999999999888999999999999999877777889988665433
No 131
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=6e-16 Score=135.33 Aligned_cols=99 Identities=34% Similarity=0.494 Sum_probs=86.4
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCC----CCCeEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDP----EYQALEL 328 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v 328 (538)
...+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.+
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 3467899999999999999888999999999996432 3457999999999999999999998653 2568999
Q ss_pred EEEecCCCCCCCccEEEEEeCccCCCC
Q 046405 329 QVYDWEKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+|||++..++|++||++.++|+++...
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 999999999999999999999999854
No 132
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.66 E-value=2.7e-16 Score=183.06 Aligned_cols=117 Identities=26% Similarity=0.541 Sum_probs=106.7
Q ss_pred CceEEEEEEeeeccCCCC-CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGK-YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
-.|.|+|+|++|+||..+ +.+||||++++++. ++||++++++.||+|||.|+|.+.+++.+++++++|||++. |
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence 468999999999999964 78999999999965 78999999999999999999999998777889999999985 5
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCC--CCCeE---EEEEEEEEe
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLID--SKNGR---IQIELQWRA 537 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~--~~~G~---i~l~~~wkp 537 (538)
+++.+|+++|+|.++..++.+++||+|.+ ++.|+ |+++++|+|
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 45599999999999999999999999997 56899 999999987
No 133
>PLN03008 Phospholipase D delta
Probab=99.66 E-value=7.2e-16 Score=165.06 Aligned_cols=129 Identities=27% Similarity=0.512 Sum_probs=109.2
Q ss_pred eeEEEEEEEEecCCCcCCC------------------------------------------CCCCCcEEEEEEcCCCCCc
Q 046405 259 VGILNVKVLRAMKLKKKDL------------------------------------------IGASDPYVKLKLTDDKLPS 296 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~ 296 (538)
.|.|.++|.+|++|+++|. .+++||||+|.+++++.
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv-- 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL-- 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce--
Confidence 5899999999999886321 24679999999976543
Q ss_pred eeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCC
Q 046405 297 KKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNE 376 (538)
Q Consensus 297 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~ 376 (538)
.||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..++..+.|+++..... +..
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp~ 164 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KPP 164 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CCC
Confidence 5999999999999999999999886 468999999999986 5899999999999999999999999976433 235
Q ss_pred ccccEEEEEEEEEeecCCC
Q 046405 377 KSRGQVVVEVLYKPFKGDE 395 (538)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~ 395 (538)
+..|+|+++++|.|+....
T Consensus 165 k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCcEEEEEEEEEEccccc
Confidence 6678999999999997753
No 134
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=5.8e-16 Score=131.03 Aligned_cols=102 Identities=22% Similarity=0.313 Sum_probs=88.5
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCC---CCCeEEEEEEEccCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP---TDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~g~~ 493 (538)
...|+|+|++|+||. .+.+||||++++++++++|++++++.||.|||.|.|.+.... ....|.++|+|++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 457899999999999 578999999999999999999999999999999999986532 13579999999975 5
Q ss_pred CCCCccEEEEEecchhccc---ceeceEEEcCC
Q 046405 494 HPKETLGYIGINLADVVNN---KRINEKYHLID 523 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~ 523 (538)
++|++||++.++|+++... .....||+|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 6799999999999999765 34789999975
No 135
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=2.7e-16 Score=138.19 Aligned_cols=108 Identities=30% Similarity=0.407 Sum_probs=89.3
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC--CCCCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD--DKLPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 331 (538)
....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+||
T Consensus 11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 345789999999999999988889999999999843 33345689999999999999999999753 23568999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|++..++|++||++.+++.+. +...+.|.++.
T Consensus 91 d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 91 DKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred ECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 999999999999999999986 33445565554
No 136
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.4e-15 Score=133.29 Aligned_cols=111 Identities=24% Similarity=0.443 Sum_probs=93.8
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcCe-------eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRGE-------EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
.|+|+|++|+||+.. +.+||||++++++. .++|++++++.||.|||.|.|.+.. ....|.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP--REHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC--CCCEEEEEEEECCC
Confidence 478999999999863 57999999999765 4699999999999999999999864 34689999999985
Q ss_pred CCCCCCCCCccEEEEEecchhcccce------eceEEEcCCC-----CCeEEEEEEEE
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKR------INEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~-----~~G~i~l~~~w 535 (538)
++++++||++.++++++..... ..+||+|.+. ..|+|++++.|
T Consensus 79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred ----CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 5689999999999999986432 4699999853 36999999987
No 137
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.65 E-value=4.7e-16 Score=136.69 Aligned_cols=121 Identities=20% Similarity=0.336 Sum_probs=98.6
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|.+++.|.|. .|.|.|+|++|++|+. .+.+||||++++.. ..++
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08402 1 LGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK 55 (136)
T ss_pred CcEEEEEeEEcCC-------------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence 4999999999875 7899999999999986 35799999999952 2458
Q ss_pred eecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEE
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 529 (538)
|++++++.||.|||.|.|.+..... ...|.|+|||++. +++|++||++.+++... +....+|+++...++..+
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 9999999999999999999864322 2479999999985 57899999999999863 445688988877655555
Q ss_pred E
Q 046405 530 Q 530 (538)
Q Consensus 530 ~ 530 (538)
.
T Consensus 130 ~ 130 (136)
T cd08402 130 A 130 (136)
T ss_pred e
Confidence 4
No 138
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.1e-15 Score=129.27 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=83.9
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC----CCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE----YQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~ 335 (538)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 47899999999998 4789999999999754 48999999999999999999986543 4689999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCc---eEEEec
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPR---EMTLDL 364 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~l 364 (538)
+++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 98999999999999999876443 456665
No 139
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.64 E-value=7e-16 Score=132.51 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=85.8
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEc--CCCCCceeeeecCCCC-CceeeeEEEEEEeCCC-CCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLT--DDKLPSKKTTVKHRNL-NPEWNEEFGLVVKDPE-YQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~v~d 332 (538)
...|.|+|+|++|+||++.+..+.+||||++++- +....++||+++++|. ||.|||+|.|.+.... .-.|.++|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 3568999999999999987656777999999984 3445578999999996 6999999999997543 3478899999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++..+++++||++.++.++... ...++|.+.
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m 121 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT 121 (135)
T ss_pred CCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence 9989999999999999987432 234555554
No 140
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=3.2e-15 Score=131.14 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=93.8
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCC--------CCCeEEEEEEEcc
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP--------TDDKLHVEVISTS 487 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~v~V~d~~ 487 (538)
.|+|+|++|++|+. .+.+||||++++++.+++|++++++.||.|||.|.|.+...+ ....+.++|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 58999999999976 367999999999999999999999999999999999754321 1246999999998
Q ss_pred CCCCCCCCCCccEEEEE-ecchhcc---cceeceEEEcCCC--CCeEEEEEEEEEeC
Q 046405 488 SRMGLLHPKETLGYIGI-NLADVVN---NKRINEKYHLIDS--KNGRIQIELQWRAS 538 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~L~~~--~~G~i~l~~~wkp~ 538 (538)
. +++|++||++.+ ++..+.. .....+||+|... ..|+|.+++++.|+
T Consensus 82 ~----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 S----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred C----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 5 568899999997 4443332 2346799999854 36999999999874
No 141
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.64 E-value=3.1e-15 Score=129.27 Aligned_cols=118 Identities=28% Similarity=0.451 Sum_probs=93.7
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
-.|+|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 24699999999999999999999854 57899999999999999
Q ss_pred CccEEEEEeCccCCCCCC-----ceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEEP-----REMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
++||++.++|.++..... ...|+++.+..+ .+....|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999986532 224666643211 0357789998875
No 142
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=5.6e-15 Score=127.94 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=94.8
Q ss_pred ceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.++++|+|++|++|... +.+||||++.++++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++. +
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence 46899999999999863 6899999999999999999999999999999999988763 5689999999874 3
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCC-------CCeEEEEEEEEEe
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDS-------KNGRIQIELQWRA 537 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-------~~G~i~l~~~wkp 537 (538)
+|++||+++++++++. ....++|+|+.. ..|.|.+++...|
T Consensus 76 -~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 5899999999998753 345788999521 2699999988765
No 143
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=8e-16 Score=135.20 Aligned_cols=115 Identities=17% Similarity=0.298 Sum_probs=95.2
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC--e---eEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG--E---EKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~--~---~~k 450 (538)
+|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++.. + ++|
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08404 1 RGELLLSLCYQPT-------------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK 55 (136)
T ss_pred CCeEEEEEEEeCC-------------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence 5999999999754 6789999999999986 35789999999843 2 458
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
|++++++.||.|||.|.|.+.... ....+.|+|||++. ++++++||++.+++.+ ......+|++|.+.
T Consensus 56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 999999999999999999986432 23468999999985 5789999999999998 34456899998765
No 144
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=3.9e-16 Score=137.21 Aligned_cols=106 Identities=32% Similarity=0.429 Sum_probs=88.4
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...+.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 356789999999999999998899999999998543 23356899999999999999999998642 24679999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++.++++++||++.+++.. .+.....|.++
T Consensus 92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred CCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 9999999999999999998 34445566655
No 145
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=3.6e-15 Score=131.44 Aligned_cols=90 Identities=26% Similarity=0.483 Sum_probs=81.0
Q ss_pred eEEEEEEeeeccCCCC--CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK--YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|+|+|++|+||+.. +.+||||+++++++..+|++++++.||+|||.|.|.+.++ ...+.++|||++. +++
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence 7899999999999753 5789999999999999999999999999999999999874 5789999999985 678
Q ss_pred CCccEEEEEecchhcccc
Q 046405 496 KETLGYIGINLADVVNNK 513 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~ 513 (538)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987643
No 146
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=6.3e-15 Score=130.38 Aligned_cols=115 Identities=18% Similarity=0.367 Sum_probs=91.0
Q ss_pred EEEEeeecc--CCC---CCCCCCeEEEEE--c---CeeEEeecccCCCCCcCcceEEEEecCCC-------CCCeEEEEE
Q 046405 421 VVILHEAQD--VEG---KYHTNPSARILF--R---GEEKKTKRIKKNRDPRWEEEFQFTLEEPP-------TDDKLHVEV 483 (538)
Q Consensus 421 ~v~v~~a~~--L~~---~~~~dpyv~v~~--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-------~~~~l~v~V 483 (538)
.++|..|++ |+. .+.+||||++++ . .++.||+++++|.||+|||.|.|.+.... ....|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455666666 554 357999999997 2 24679999999999999999999996421 135799999
Q ss_pred EEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC---CCeEEEEEEEEEeC
Q 046405 484 ISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS---KNGRIQIELQWRAS 538 (538)
Q Consensus 484 ~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---~~G~i~l~~~wkp~ 538 (538)
||++. ++++|++||++.++|+.+..+....+|++|.+. .+|++++++.-|.+
T Consensus 85 ~d~~~---f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 85 YHKGG---FLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EeCCC---cccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 99974 235799999999999999887778889998854 27999999987753
No 147
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.63 E-value=6.5e-16 Score=135.45 Aligned_cols=107 Identities=34% Similarity=0.529 Sum_probs=87.8
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC--CCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD--DKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...|.|+|+|++|++|++.+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45789999999999999999899999999999853 233456899999999999999999998542 23569999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
++..++|++||++.+++... ++....|.++.
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred CCCCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence 99999999999999998733 34455566553
No 148
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=1.5e-15 Score=128.32 Aligned_cols=102 Identities=25% Similarity=0.401 Sum_probs=86.3
Q ss_pred CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCC-
Q 046405 277 LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPE- 355 (538)
Q Consensus 277 ~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~- 355 (538)
..|.+||||+++++++. .++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999997643 35899999999999999999999877678899999999988 899999999999998653
Q ss_pred CCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 356 EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3456788873 2457999999999884
No 149
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=6.7e-16 Score=135.73 Aligned_cols=116 Identities=18% Similarity=0.362 Sum_probs=94.7
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc--C---eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR--G---EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~--~---~~~k 450 (538)
+|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++. + .+++
T Consensus 1 ~G~l~~sl~y~~~-------------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k 55 (136)
T cd08405 1 RGELLLSLCYNPT-------------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK 55 (136)
T ss_pred CcEEEEEEEEcCC-------------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence 5999999999865 7899999999999976 3579999999983 2 2458
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
|++++++.||.|||.|.|.+.... ....|.|+|||++. ++++++||++.+++.+. +...++|+++...+
T Consensus 56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~ 125 (136)
T cd08405 56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKP 125 (136)
T ss_pred CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccC--CchHHHHHHHHhCC
Confidence 999999999999999999986321 23579999999975 57889999999999875 33456777776543
No 150
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.62 E-value=3e-15 Score=128.52 Aligned_cols=99 Identities=28% Similarity=0.439 Sum_probs=86.6
Q ss_pred EEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC----CC
Q 046405 266 VLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK----VG 337 (538)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~----~~ 337 (538)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999997653 123699999999999999999998765556789999999997 78
Q ss_pred CCCccEEEEEeCccCCCCCCceEEEec
Q 046405 338 HHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+|++||++.++++++..+.....+++|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777788877
No 151
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=9.3e-16 Score=134.50 Aligned_cols=120 Identities=19% Similarity=0.344 Sum_probs=100.3
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----eEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----EKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT 451 (538)
|+|.+.++|.+. .+.|.|+|++|+||+. .+.+||||++++.+. .++|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T 55 (134)
T cd00276 1 GELLLSLSYLPT-------------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT 55 (134)
T ss_pred CeEEEEEEeeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence 889999999864 6889999999999986 357999999999653 4599
Q ss_pred ecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEE
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 530 (538)
++++++.||.|||.|.|.+.... ....|.|+|||.+. ++++++||++.+++++ .+...++||+|..+++..|.
T Consensus 56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~ 129 (134)
T cd00276 56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA 129 (134)
T ss_pred cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence 99999999999999999987532 14689999999975 4678999999999999 45567999999887655544
No 152
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.62 E-value=4.4e-15 Score=128.00 Aligned_cols=107 Identities=23% Similarity=0.388 Sum_probs=88.4
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEc-CeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFR-GEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+.. +.+||||+++++ ...++|++++++.||.|||.|+|.+.. .+.|.++|||++. +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence 78999999999863 579999999997 556799999999999999999999964 4789999999975 333
Q ss_pred --CCccEEEEEecchhcccc-eeceEEEcCCCC-------CeEEEEEE
Q 046405 496 --KETLGYIGINLADVVNNK-RINEKYHLIDSK-------NGRIQIEL 533 (538)
Q Consensus 496 --d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-------~G~i~l~~ 533 (538)
|++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 689999999999998654 347899996442 46666654
No 153
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=6e-15 Score=126.39 Aligned_cols=106 Identities=25% Similarity=0.507 Sum_probs=91.8
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|+|++|++|+.. +.+||||+++++++ ..+|++++++.||.|||.|.|.+... .+.|.|+|||++. +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence 6899999999999873 58999999999774 57999999999999999999998763 4689999999985 5
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCCCCeEEE
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 530 (538)
++|++||++.++|.++..+ ..+.||.|.++..++..
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 6889999999999999887 56899999988766654
No 154
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=2.2e-15 Score=132.08 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=90.3
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC---CCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEE
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQ 329 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 329 (538)
.....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 345678999999999999999988999999999996432 235699999999999999999999864 345789999
Q ss_pred EEecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 330 VYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|||++.++++++||++.+++.....+ ..+.|..+.
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 99999999999999999998755432 334565553
No 155
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.62 E-value=6.6e-15 Score=128.88 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=100.2
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|+|+|..... ...+.|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 3468999999999999865 8999999997654 5999999999999999999986443 467999998765322
Q ss_pred ----CCCccEEEEEeCccCCCCCCceEEEeccccCCCCC---CCCCccccEEEEEEEEEee
Q 046405 338 ----HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPND---TRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 338 ----~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~~~p~ 391 (538)
++++||++.||+.++..+...+.|+++........ .......+.|++++.|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 57899999999999999888999999865321100 0012445799999999986
No 156
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=1.3e-15 Score=133.96 Aligned_cols=108 Identities=37% Similarity=0.540 Sum_probs=88.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC--CCCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD--DKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~ 331 (538)
..+.|.|+|+|++|++|+..+..|.+||||++++.+ +....++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~ 90 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVL 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 346789999999999999999889999999999953 3334568999999999999999999986432 347999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|++.+++|++||++.+++... +.....|.++.
T Consensus 91 d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~ 122 (136)
T cd08402 91 DYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML 122 (136)
T ss_pred eCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence 999999999999999999864 33445566554
No 157
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=3e-15 Score=126.65 Aligned_cols=99 Identities=21% Similarity=0.409 Sum_probs=83.0
Q ss_pred eEEEEEEeeeccCCC---C-CCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCC--CCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEG---K-YHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~ 488 (538)
|.|+|+|++|++|+. . +.+||||++++.+ ..++|++++++.||+|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999986 3 6799999999853 3469999999999999999999886421 24589999999985
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
+++|++||++.+++.++... ..|+++..
T Consensus 81 ----~~~dd~lG~~~i~l~~l~~~---~~~~~~~~ 108 (111)
T cd04041 81 ----FTADDRLGRVEIDLKELIED---RNWMGRRE 108 (111)
T ss_pred ----CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence 56899999999999999854 47888754
No 158
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.62 E-value=9.9e-15 Score=126.55 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=92.1
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCe---eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGE---EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
.|+|+|.+|++|+. .+.+||||++.+++. ..+|++++++.||.|||.|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence 58899999999986 357899999998653 46999999999999999999999874 45789999999975
Q ss_pred CCCCCccEEEEEecchhccc---ceeceEEEcCCCCCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVNN---KRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
++++++||++.++|.++... ...+.|++|.+ +|++++++.+
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~ 120 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM 120 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence 46789999999999986542 24578999974 7999988876
No 159
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=4.3e-15 Score=128.21 Aligned_cols=107 Identities=32% Similarity=0.485 Sum_probs=89.7
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v 330 (538)
....+.|+|+|++|++|+..+..+.+||||++.+.+. .....+|++++++.||.|||+|.|..... ....+.++|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 3446889999999999999888889999999998432 23457999999999999999999963322 256899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEe
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLD 363 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 363 (538)
||++.. .+++||++.++++++..++.+++++.
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 999988 89999999999999998877777654
No 160
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=1.6e-15 Score=132.92 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=93.1
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT 451 (538)
|+|.++++|.|. .|.|.|+|++|+||+. .+.+||||++++.. .+++|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT 55 (135)
T cd08410 1 GELLLSLNYLPS-------------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT 55 (135)
T ss_pred CcEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence 899999999875 6889999999999986 35799999999832 24699
Q ss_pred ecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCC
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN 526 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 526 (538)
++++++.||+|||.|.|.+..... ...|.|+|||++. .+++++||++.|+....-. ....+|+.+..+.+
T Consensus 56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~~~ 126 (135)
T cd08410 56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNSQR 126 (135)
T ss_pred ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhCCC
Confidence 999999999999999999864322 2369999999985 5789999999877644322 23578888876533
No 161
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.61 E-value=8.3e-15 Score=127.05 Aligned_cols=112 Identities=21% Similarity=0.392 Sum_probs=90.6
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCC---
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMG--- 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g--- 491 (538)
+.|+|+|++|++|+.. +.+||||++++++..++|++++++.||.|||.|.|.+... ...|.|+|||++....
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccc
Confidence 3689999999999863 5789999999988888999999999999999999998653 4689999999874200
Q ss_pred ----CCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEE
Q 046405 492 ----LLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIEL 533 (538)
Q Consensus 492 ----~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~ 533 (538)
..+.+++||++.+++.++.. ....||+|...+ +|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 01368999999999998743 357999998632 58888764
No 162
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=3.6e-15 Score=130.70 Aligned_cols=108 Identities=30% Similarity=0.443 Sum_probs=85.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...|.|+|+|++|++|+..+..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 356899999999999999998899999999998432 23457899999999999999999998532 24479999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+|..++|++||++.+........ ....|..+.
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 99999999999998765433322 234555543
No 163
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.61 E-value=5.4e-15 Score=129.31 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=89.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-------ee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-------EE 448 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-------~~ 448 (538)
.|+|.+++.|.+. .+.|+|+|++|++|+. .+.+||||++++.+ ..
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~ 56 (133)
T cd04009 2 YGVLTVKAYYRAS-------------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPT 56 (133)
T ss_pred ceEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccc
Confidence 6999999999754 6789999999999986 35799999999953 35
Q ss_pred EEeecccCCCCCcCcceEEEEecCCC---CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc
Q 046405 449 KKTKRIKKNRDPRWEEEFQFTLEEPP---TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
+||++++++.||+|||.|.|.+.... ....|.++|||++. +++|++||++.++|+++..
T Consensus 57 ~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 57 PKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCCc
Confidence 69999999999999999999987521 24589999999975 5679999999999999985
No 164
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=2.3e-15 Score=132.00 Aligned_cols=119 Identities=16% Similarity=0.299 Sum_probs=94.7
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT 451 (538)
|+|.+++.|.|. .+.|+|+|++|++|+. .+.+||||++++.. ..++|
T Consensus 1 g~l~~~~~y~~~-------------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT 55 (134)
T cd08403 1 GELMFSLCYLPT-------------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT 55 (134)
T ss_pred CeEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence 899999999865 7899999999999986 35799999999842 24589
Q ss_pred ecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEE
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 529 (538)
++++++.||.|||.|.|.+..... ...|.++|||++. ++++++||++.+++... +....+|+++...++-.+
T Consensus 56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNAD--GQGREHWNEMLANPRKPI 128 (134)
T ss_pred CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCCC--CchHHHHHHHHHCCCCee
Confidence 999999999999999999864212 2469999999985 57899999999998732 334578888765543333
No 165
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.61 E-value=1.4e-15 Score=133.50 Aligned_cols=109 Identities=28% Similarity=0.304 Sum_probs=91.1
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d 332 (538)
...+.|.|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+.. .....|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 34688999999999999888 7889999999986532 245689999999999999999999853 235689999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++..+++++||++.++......++..++|.++.+
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999999999999999877766666667776644
No 166
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=1.8e-15 Score=132.63 Aligned_cols=119 Identities=16% Similarity=0.291 Sum_probs=95.4
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC------eeEE
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG------EEKK 450 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~k 450 (538)
|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.. .++|
T Consensus 2 ~ei~~sL~Y~~~-------------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k 56 (138)
T cd08408 2 PELLLGLEYNAL-------------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK 56 (138)
T ss_pred CeEEEEeEEcCC-------------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence 789999999865 7899999999999986 35789999999942 1359
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeE
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGR 528 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~ 528 (538)
|++++++.||+|||+|.|.+.... ....|.|.|+|.+. ++++++||++.+++...-. +...+|+.+..+++-.
T Consensus 57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQ 130 (138)
T ss_pred ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCE
Confidence 999999999999999999997532 24589999999985 5789999999999875432 2346888876554433
No 167
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.60 E-value=1e-14 Score=121.82 Aligned_cols=95 Identities=27% Similarity=0.424 Sum_probs=75.1
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec------
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW------ 333 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~------ 333 (538)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 458999999997532 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCccEEEEEeCc--cCCCCCCceEEEe
Q 046405 334 -EKVGHHDKMGMNVIPLK--DITPEEPREMTLD 363 (538)
Q Consensus 334 -~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~ 363 (538)
|..+.|+++|++.+.|. .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988877765 4444433443343
No 168
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.60 E-value=1.9e-15 Score=132.35 Aligned_cols=104 Identities=14% Similarity=0.296 Sum_probs=85.4
Q ss_pred ceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEcc
Q 046405 417 GGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTS 487 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~ 487 (538)
.+.|.|+|++|+||+. .+.+||||++++.+ ..++|++++++.||+|||.|.|.+..... ...|.++|||++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 7899999999999986 35799999999953 24699999999999999999999875322 357999999987
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCC
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN 526 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 526 (538)
. .+++++||.+.+++.. .++...+||++...++
T Consensus 92 ~----~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 92 I----GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD 124 (133)
T ss_pred C----CCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence 5 4678999999999985 3445679998876543
No 169
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.60 E-value=5.4e-15 Score=127.00 Aligned_cols=93 Identities=28% Similarity=0.397 Sum_probs=81.2
Q ss_pred CceEEEEEEeeeccCCC--CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEG--KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
..|.|+|+|++|++|+. .+.+||||+++++++.+||++++++.||+|||.|.|.....+..+.|.|+|||++. +
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~----~ 101 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN----G 101 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----C
Confidence 46899999999999975 35789999999999999999999999999999999985443356799999999986 5
Q ss_pred CCCCccEEEEEecchhccc
Q 046405 494 HPKETLGYIGINLADVVNN 512 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~ 512 (538)
++|++||++.++|.....+
T Consensus 102 s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCCeeEEEEEEecCCcee
Confidence 7899999999999987754
No 170
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.60 E-value=1.5e-14 Score=125.04 Aligned_cols=104 Identities=28% Similarity=0.471 Sum_probs=90.5
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCC--CCCeEEEEEEEccCCCC
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSSRMG 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~g 491 (538)
|.|+|+|++|++|+.. +.+||||++++++..++|++.++ +.||.|||.|.|.+.... ....|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999863 57999999999988889998875 899999999999998742 24689999999975
Q ss_pred CCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 492 LLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
+++|++||++.++|.++..++..+.||+|...+
T Consensus 78 -~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 567899999999999999888889999998653
No 171
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=8.9e-15 Score=127.71 Aligned_cols=106 Identities=35% Similarity=0.543 Sum_probs=91.5
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC-CCCeEEEEEEecCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP-EYQALELQVYDWEKV 336 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~~~~ 336 (538)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 899999999999999888889999999999642 22356999999999999999999998654 256899999999988
Q ss_pred CCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 337 GHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
+++++||++.++++++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999865 6778888743
No 172
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=7.3e-16 Score=150.56 Aligned_cols=107 Identities=34% Similarity=0.550 Sum_probs=92.4
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWE 334 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~ 334 (538)
....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+.... ...|.|+|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 456899999999999999999999999999995533 34569999999999999999999986443 678999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+.+++||+|..++.+++|... +.+-|+.|+
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlL 287 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLL 287 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHh
Confidence 999999999999999999876 445566664
No 173
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.2e-14 Score=122.58 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=85.6
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCC
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKE 497 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~ 497 (538)
|.|+|++|+||+..+.+||||+++++++. ++|+++++ .||.|||.|.|.+..... ...+.+.++|++. ...+.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence 78999999999987889999999998864 69999989 999999999999976321 2367778888763 34566
Q ss_pred ccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 498 TLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 498 ~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
.+|.+.+.. +..+...++||+|.+.. .|+|+++++|
T Consensus 77 ~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALSK--LDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecC--cCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 677666554 44456678999998642 6999999875
No 174
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.58 E-value=3.1e-15 Score=131.15 Aligned_cols=107 Identities=36% Similarity=0.448 Sum_probs=91.2
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEec
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYDW 333 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~ 333 (538)
..+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 458999999999999998888899999999996542 33468999999999999999999986543 57899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
+..+++++||++.+++++ .+...+.|+++..
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 988899999999999999 4556677777754
No 175
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=3.5e-14 Score=121.34 Aligned_cols=114 Identities=24% Similarity=0.384 Sum_probs=87.9
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEecCCCCCC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYDWEKVGHH 339 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~~~~~~d 339 (538)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+..+++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358999888 99999999999987643 35678888888766566
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
..+|++. +..+..+...+.|++|...- ......|+|++.+.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566778899875421 124678999999976
No 176
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.57 E-value=6e-14 Score=121.95 Aligned_cols=119 Identities=27% Similarity=0.389 Sum_probs=93.9
Q ss_pred EEEEEEEEecCCCcCC--CCCCCCcEEEEEEcCCC---CCceeeeecCCCC-CceeeeEEEEEEeCCCCCeEEEEEEecC
Q 046405 261 ILNVKVLRAMKLKKKD--LIGASDPYVKLKLTDDK---LPSKKTTVKHRNL-NPEWNEEFGLVVKDPEYQALELQVYDWE 334 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~v~d~~ 334 (538)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999995432 3457899887765 9999999999998766678999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.. ++++||++.++++++..+. .+++|... ..+....|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34555321 1113456888888764
No 177
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.57 E-value=1.6e-14 Score=125.02 Aligned_cols=109 Identities=18% Similarity=0.289 Sum_probs=90.0
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcC-eeEEeeccc-CCCCCcCcceEEEEecCCC---CCCeEEEEEEEccCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRG-EEKKTKRIK-KNRDPRWEEEFQFTLEEPP---TDDKLHVEVISTSSRM 490 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~ 490 (538)
.|+|+|++|++|+. .+.+||||++++++ .+++|++.+ ++.||.|||.|.|.+.... ....|.++|+|++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC--
Confidence 37899999999986 35799999999988 778999875 5899999999999997641 15789999999975
Q ss_pred CCCCCCCccEEEEEecchhcccce-----eceEEEcCCC---CCeEEEE
Q 046405 491 GLLHPKETLGYIGINLADVVNNKR-----INEKYHLIDS---KNGRIQI 531 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~---~~G~i~l 531 (538)
+++|++||++.++|.++..+.. ...||+|.+. ..|.|++
T Consensus 79 --~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 --SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred --CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 4678999999999999997553 3689999864 3577653
No 178
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.57 E-value=1.5e-14 Score=122.19 Aligned_cols=96 Identities=27% Similarity=0.535 Sum_probs=79.8
Q ss_pred EEEEEecCCCcCCCCCCCCcEEEEEEcCCC---CCceeeeecCCCCCceeeeEEEEEEeCCC----CCeEEEEEEecCCC
Q 046405 264 VKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLVVKDPE----YQALELQVYDWEKV 336 (538)
Q Consensus 264 V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~~ 336 (538)
+-.++|++|+..|..|.+||||++++.++. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 345699999999999999999999986542 234799999999999999 6888764322 57899999999999
Q ss_pred CCCCccEEEEEeCccCCCCCCceE
Q 046405 337 GHHDKMGMNVIPLKDITPEEPREM 360 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++|++||++.++++++..++..+.
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceE
Confidence 999999999999999986654443
No 179
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.55 E-value=3.3e-14 Score=124.71 Aligned_cols=102 Identities=28% Similarity=0.375 Sum_probs=87.8
Q ss_pred EEEEEeeeccCCCC--CCCCCeEEEEEc----CeeEEeecccCCCCCcCcceEEEEecCCC--------------CCCeE
Q 046405 420 LVVILHEAQDVEGK--YHTNPSARILFR----GEEKKTKRIKKNRDPRWEEEFQFTLEEPP--------------TDDKL 479 (538)
Q Consensus 420 L~v~v~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l 479 (538)
|+|+|++|+||+.. +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999853 689999999998 66789999999999999999999987641 24589
Q ss_pred EEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 480 HVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 480 ~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
.|+|||++. ++++++||++.++|.++........||+|...+
T Consensus 81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASM----VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCc----CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 999999985 467999999999999998776779999998653
No 180
>PLN03008 Phospholipase D delta
Probab=99.54 E-value=4.9e-14 Score=151.15 Aligned_cols=98 Identities=17% Similarity=0.432 Sum_probs=86.5
Q ss_pred CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc
Q 046405 434 YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 434 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~ 512 (538)
+.+||||+|.+++++ .||++++++.||+|||.|.|.|.+. ...|.++|+|++. ++ ++.||.+.|+|+++..+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence 468999999998765 4999999999999999999999874 4689999999885 44 68999999999999998
Q ss_pred ceeceEEEcCCCC------CeEEEEEEEEEeC
Q 046405 513 KRINEKYHLIDSK------NGRIQIELQWRAS 538 (538)
Q Consensus 513 ~~~~~~~~L~~~~------~G~i~l~~~wkp~ 538 (538)
...+.|++|.+.. +|+|+++++|+|+
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 8889999998652 5899999999995
No 181
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.54 E-value=7e-14 Score=120.62 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=87.7
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|++++.|.+. .+.|+|+|++|++|+.. +.+||||++++.+ ...+
T Consensus 1 ~G~~~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r 55 (123)
T cd04035 1 LGTLEFTLLYDPA-------------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR 55 (123)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence 4899999999865 68899999999999862 5789999999842 3569
Q ss_pred eecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccce
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKR 514 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~ 514 (538)
|++++++.||.|||.|.|..... .....+.++|||++. + ++++||++.++|+++..++.
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCCcc
Confidence 99999999999999999963321 123589999999975 4 78999999999999987653
No 182
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.54 E-value=1.1e-13 Score=119.66 Aligned_cols=108 Identities=23% Similarity=0.448 Sum_probs=88.7
Q ss_pred EEEEEEeeeccCCC--CCCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEG--KYHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
.|+|+|.+|+.+.. .+.+||||+++++++ .++|++++++.||.|||.|.|.+.. .+.|.|+|||++. ++.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence 58899999984433 357999999999887 7899999999999999999999864 3789999999985 568
Q ss_pred CCccEEEEEecchhcccce-----eceEEEcCCCC------CeEEEEEE
Q 046405 496 KETLGYIGINLADVVNNKR-----INEKYHLIDSK------NGRIQIEL 533 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~~------~G~i~l~~ 533 (538)
|++||++.++|.++..+.. ...|++|.... .|++.+++
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999999986432 34589996443 68888765
No 183
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.9e-15 Score=140.09 Aligned_cols=222 Identities=25% Similarity=0.387 Sum_probs=165.7
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEE--EEEeCCC-CCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFG--LVVKDPE-YQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~--f~v~~~~-~~~L~v~v~ 331 (538)
.....+..++.+|++|+.++..+..|||++..+.+. +..+.+|++..+++||.|+|+-. +...+.. ...+++.|.
T Consensus 90 ~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 90 SESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeec
Confidence 445688999999999999999999999999999653 23345788999999999997644 3343322 456788999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCC--CCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMD--PNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKA 409 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~ 409 (538)
|.+.+..++++|+..+++..+...+.+.+..-|.+.+. ..+......+|++.+++.|...
T Consensus 170 dn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~------------------ 231 (362)
T KOG1013|consen 170 DNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST------------------ 231 (362)
T ss_pred cCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC------------------
Confidence 99999999999999999999988765332211122221 1122224678999999977543
Q ss_pred CCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----eEEeecccCCCCCcCcceEEEEecCCC-CCCeEE
Q 046405 410 PEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLH 480 (538)
Q Consensus 410 ~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~ 480 (538)
..-+.+++.+|..|.. ++.+||||+.++... ++||.+.++|.||+||+.|.|.+.... ...++.
T Consensus 232 -------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ 304 (362)
T KOG1013|consen 232 -------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVA 304 (362)
T ss_pred -------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEE
Confidence 4567788888888865 468999999998532 459999999999999999999997543 245899
Q ss_pred EEEEEccCCCCCCCCCCccEEEEEecc
Q 046405 481 VEVISTSSRMGLLHPKETLGYIGINLA 507 (538)
Q Consensus 481 v~V~d~~~~~g~~~~d~~lG~~~i~L~ 507 (538)
|.|+|++.. .+.+.+|-....+.
T Consensus 305 lsvgd~~~G----~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 305 LSVGDYDIG----KSNDSIGGSMLGGY 327 (362)
T ss_pred EeecccCCC----cCccCCCccccccc
Confidence 999999853 35677776655543
No 184
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=8.3e-14 Score=118.66 Aligned_cols=100 Identities=26% Similarity=0.356 Sum_probs=86.7
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+.. +.+||||++.+++.. ++|+++.++.||.|||.|.|.+... ....+.++|||++. +++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence 57899999999863 578999999997644 6999999999999999999999764 45789999999975 568
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCC
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
+++||++.+++.++..+.....|++|.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 89999999999999887778999999854
No 185
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.53 E-value=7.9e-14 Score=123.64 Aligned_cols=97 Identities=23% Similarity=0.376 Sum_probs=83.1
Q ss_pred CCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----------------------------eEEeecccCCCCCcC
Q 046405 415 EGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----------------------------EKKTKRIKKNRDPRW 462 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----------------------------~~kT~v~~~t~nP~w 462 (538)
...+.|.|+|++|+||.. .+.+||||++.+... .++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 458999999999999976 368999999998531 258999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 463 EEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 463 ne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
||.|.|.+... ....|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 105 nE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999999764 4578999999985 5899999999999984 457999987
No 186
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.52 E-value=2.3e-13 Score=118.62 Aligned_cols=111 Identities=18% Similarity=0.327 Sum_probs=86.8
Q ss_pred EEEEEEeeeccCCC--CCCCCCeEEEEEcC-------------eeEEeecccCCCCCcC-cceEEEEecCCCCCCeEEEE
Q 046405 419 LLVVILHEAQDVEG--KYHTNPSARILFRG-------------EEKKTKRIKKNRDPRW-EEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v~ 482 (538)
...|++++|+||+. .+.+||||++++.. +.++|++++++.||+| ||.|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 35788999999975 26899999999953 3579999999999999 9999999853 4689999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccc---eeceEEEcCCCC-----CeEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNK---RINEKYHLIDSK-----NGRIQIEL 533 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~L~~~~-----~G~i~l~~ 533 (538)
|+|++.. +....|++||++.+++.+++... ....||+|.... +|+|.+++
T Consensus 79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9997642 11113799999999999998653 357899997542 46666654
No 187
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.51 E-value=1.5e-14 Score=141.45 Aligned_cols=121 Identities=23% Similarity=0.460 Sum_probs=102.7
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~ 447 (538)
...+|+|.+.+... ...|+|+|.+|+||.+ .|.+||||++.+-. .
T Consensus 165 tE~RGrl~l~~~~~---------------------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 165 TERRGRLYLEAHIK---------------------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES 217 (683)
T ss_pred hhhcceEEEEEEec---------------------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence 56789999988552 5689999999999976 57899999999832 3
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCe
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 527 (538)
++||++++.++||+|||+|+|.+...+....|.|+|||+++ .++++++|+.+..++++..+. .+.||.|.....|
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEG 292 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEG 292 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhhcc-hhhHHHHhhhhcC
Confidence 46999999999999999999999876667789999999997 589999999999999998765 4889998766555
Q ss_pred E
Q 046405 528 R 528 (538)
Q Consensus 528 ~ 528 (538)
+
T Consensus 293 E 293 (683)
T KOG0696|consen 293 E 293 (683)
T ss_pred c
Confidence 4
No 188
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=7e-14 Score=111.82 Aligned_cols=85 Identities=34% Similarity=0.608 Sum_probs=76.4
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|+|+|++|+||+..+..+..||||++++++.....++|+++.++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998755445799999999999999999999877777779999999999988999
Q ss_pred cEEEE
Q 046405 342 MGMNV 346 (538)
Q Consensus 342 lG~~~ 346 (538)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 189
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=5.6e-14 Score=164.13 Aligned_cols=123 Identities=23% Similarity=0.378 Sum_probs=104.2
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEec
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDW 333 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~ 333 (538)
...-.|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|.|.+.++. .+.|+++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 3455899999999999998 4478999999999996643 48999999999999999999998875 46799999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccE---EEEEEEEEe
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQ---VVVEVLYKP 390 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 390 (538)
|.+++ +.+|.+.+++.++..++....|++|.+ +++..|+ |++++.|.+
T Consensus 2051 d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 99854 599999999999998888888888753 1455677 999998864
No 190
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=5.4e-13 Score=111.51 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=73.4
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC---C
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM---G 491 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~---g 491 (538)
|.|+|++|+||++ .+||||+++++. ...||+++++|.||+|||.|+|.+.. ...|.+.|||++... .
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999974 599999999863 24699999999999999999999964 468999999984110 1
Q ss_pred CCCCCCccEEEEEecc--hhcccceeceEEEcC
Q 046405 492 LLHPKETLGYIGINLA--DVVNNKRINEKYHLI 522 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~--~l~~~~~~~~~~~L~ 522 (538)
..+.|+.+|...+.|+ .+..++.....+.|.
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 1467899977776664 343444344455554
No 191
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6.4e-13 Score=137.33 Aligned_cols=134 Identities=20% Similarity=0.262 Sum_probs=113.6
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCe---eE
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRGE---EK 449 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~ 449 (538)
....|+|.+++.|... ...|.|+|.+|+||+.. +.+||||++++... +.
T Consensus 150 ~~~~G~l~fsl~Yd~~-------------------------~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~ 204 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFE-------------------------LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKF 204 (421)
T ss_pred ceeeeeEEEEEEeccc-------------------------CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcc
Confidence 5678999999999754 78899999999999874 46899999999653 45
Q ss_pred EeecccCCCCCcCcceEEEEecCC-CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC----
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEP-PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS---- 524 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~-~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---- 524 (538)
+|++.++|+||+|||.|.|.+... .....|.+.|||.++ |+++++||.+.++|..+........|.++...
T Consensus 205 kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~ 280 (421)
T KOG1028|consen 205 KTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS 280 (421)
T ss_pred eeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCccccccccceeeeccccccCCc
Confidence 999999999999999999997643 234689999999986 88999999999999988776667789999764
Q ss_pred --CCeEEEEEEEEEeC
Q 046405 525 --KNGRIQIELQWRAS 538 (538)
Q Consensus 525 --~~G~i~l~~~wkp~ 538 (538)
..|+|.+.++|.|+
T Consensus 281 ~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 281 EELAGELLLSLCYLPT 296 (421)
T ss_pred ccccceEEEEEEeecC
Confidence 13799999999885
No 192
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=2.7e-13 Score=116.98 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=76.3
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCee--EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEE--KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
+|+|+|++|++|+. .+.+||||++++++.. .||++++++.||+|||.|.|.+..+ ..+.|.++|||++. +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence 47899999999986 3589999999998865 4788899999999999999998653 56789999999975 5
Q ss_pred CCCCccEEEEEecchhcc
Q 046405 494 HPKETLGYIGINLADVVN 511 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~ 511 (538)
++|++||++.++|++...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 689999999999998764
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.44 E-value=6.7e-13 Score=113.92 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=80.8
Q ss_pred EeeeccCCC---CCCCCCeEEEEEcCee-------EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 424 LHEAQDVEG---KYHTNPSARILFRGEE-------KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 424 v~~a~~L~~---~~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.++|++|+. .+.+||||++++.+.. ++|++++++.||+|||.|.|.+... ..+.+.++|||++...+.+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCCC
Confidence 378999976 3579999999997753 6999999999999999999987542 4568999999998510004
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
+++++||++.+++++++.+.....|++|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 689999999999999998777788999943
No 194
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.42 E-value=3.2e-12 Score=111.02 Aligned_cols=108 Identities=21% Similarity=0.321 Sum_probs=88.0
Q ss_pred EEEEEEeeeccCCC-----CCCCCCeEEEEEc------CeeEEeecccCCC-CCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 419 LLVVILHEAQDVEG-----KYHTNPSARILFR------GEEKKTKRIKKNR-DPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 419 ~L~v~v~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
.|+|+|++|+||+. .+..||||++++. ....+|++++++. ||.|||.|.|.+... ....|.++|+|+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 68999999999975 3478999999994 3457999988775 999999999999863 446799999999
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEE
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 535 (538)
+. . ++++||++.++|+++..+ .+|++|.+. ..|+|.++++.
T Consensus 82 ~~----~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DS----G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC----C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 74 3 789999999999998543 478898753 25888888775
No 195
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=6.1e-13 Score=135.44 Aligned_cols=122 Identities=28% Similarity=0.464 Sum_probs=100.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
+=...++++|++|.+|..+|..|++||||.+.++..+ +||+++...+||+|||.|+|..++. ++.++++|||+|..
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~d 367 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDND 367 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCccc
Confidence 3457899999999999999999999999999998655 4899999999999999999999886 78999999998742
Q ss_pred -----------CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 337 -----------GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 337 -----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
.+|||+|+..|.++.|..+ -+.|+.|.++.+. +..+|.|++.+...
T Consensus 368 lksklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdk-----savsgairlhisve 424 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDK-----SAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccch-----hhccceEEEEEEEE
Confidence 3689999999999999764 4556666554433 56788777666543
No 196
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.35 E-value=8.4e-12 Score=107.34 Aligned_cols=95 Identities=27% Similarity=0.277 Sum_probs=80.4
Q ss_pred EEEEEEEecCCCcC--CCCCC--CCcEEEEEEcCCCCCceeeeecCCCCC--ceeeeEEEEEEeCC--------------
Q 046405 262 LNVKVLRAMKLKKK--DLIGA--SDPYVKLKLTDDKLPSKKTTVKHRNLN--PEWNEEFGLVVKDP-------------- 321 (538)
Q Consensus 262 L~V~v~~A~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------- 321 (538)
|+|.|.+|+|++.. +..|. +||||+..+.+....+++|.+..+++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 89999999996643 33564 999999999876555679999999999 99999999987651
Q ss_pred ---------CCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCC
Q 046405 322 ---------EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 322 ---------~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
....|.++|||+|.+++|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 14679999999999999999999999999987663
No 197
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.34 E-value=3.5e-12 Score=136.48 Aligned_cols=93 Identities=29% Similarity=0.422 Sum_probs=83.2
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
....+|.+++|-+|...|.+|.+|||+++.++++.. ..++..+.+|+||+|++.|++....+....+.++|||+|..+.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 456779999999999999999999999999987653 3477889999999999999999888878899999999999999
Q ss_pred CCccEEEEEeCccC
Q 046405 339 HDKMGMNVIPLKDI 352 (538)
Q Consensus 339 d~~lG~~~i~l~~l 352 (538)
|+.+|+..++|+.-
T Consensus 691 d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 691 DEKIGETTIDLENR 704 (1105)
T ss_pred cchhhceehhhhhc
Confidence 99999999998754
No 198
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.32 E-value=1.3e-11 Score=101.47 Aligned_cols=97 Identities=44% Similarity=0.685 Sum_probs=83.0
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|.|+|++|++|...+..+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||++..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 37899999999998776567899999999865223468999999999999999999998765789999999998877899
Q ss_pred ccEEEEEeCccCCCCCC
Q 046405 341 KMGMNVIPLKDITPEEP 357 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~ 357 (538)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999999877643
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.30 E-value=1.7e-11 Score=103.48 Aligned_cols=92 Identities=20% Similarity=0.363 Sum_probs=72.4
Q ss_pred EEeeeccCCCC---CCCCCeEEEEEcCe------eEEeecccCCCCCcCcceEEEEecCC---CCCCeEEEEEEEccCCC
Q 046405 423 ILHEAQDVEGK---YHTNPSARILFRGE------EKKTKRIKKNRDPRWEEEFQFTLEEP---PTDDKLHVEVISTSSRM 490 (538)
Q Consensus 423 ~v~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~v~V~d~~~~~ 490 (538)
..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+... .....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~-- 81 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS-- 81 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC--
Confidence 34689999763 57999999998654 3699999999999999 688876432 125689999999985
Q ss_pred CCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 491 GLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
+++|++||+++++++++..+. ..+|.+
T Consensus 82 --~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 --SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred --CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 578999999999999998543 345544
No 200
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.26 E-value=4.3e-11 Score=98.12 Aligned_cols=100 Identities=40% Similarity=0.618 Sum_probs=83.9
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|.|+|++|++|......+..+|||.+.+.+. ..++|+++.++.||.|||.|.|.+.......+.++||+.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 5789999999988666778999999999862 23589999999999999999999977456789999999998878999
Q ss_pred cEEEEEeCccCC-CCCCceEEEe
Q 046405 342 MGMNVIPLKDIT-PEEPREMTLD 363 (538)
Q Consensus 342 lG~~~i~l~~l~-~~~~~~~~~~ 363 (538)
+|++.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999998 4444455543
No 201
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.25 E-value=1.9e-11 Score=97.53 Aligned_cols=79 Identities=33% Similarity=0.581 Sum_probs=68.9
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|+|+|++|+||+. .+.+||||++++++ ..++|++++++.+|.|+|.|.|.+... ..+.|.|+|||++. +
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC----C
Confidence 6899999999987 35899999999988 668999999999999999999998764 45569999999986 4
Q ss_pred CCCCccEEEE
Q 046405 494 HPKETLGYIG 503 (538)
Q Consensus 494 ~~d~~lG~~~ 503 (538)
++|++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5699999874
No 202
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.6e-11 Score=125.33 Aligned_cols=120 Identities=18% Similarity=0.372 Sum_probs=98.2
Q ss_pred CCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEcc
Q 046405 411 EGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 411 ~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
++.+.-++.++++|..|++|.+ .|++||||.+.++..+++|+++....||+|||.|.|.+++. .+.|.+.|||++
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded 365 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDED 365 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCc
Confidence 3445567899999999999976 47899999999999999999999999999999999999984 578999999987
Q ss_pred CCCC-C------CCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEE
Q 046405 488 SRMG-L------LHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQ 534 (538)
Q Consensus 488 ~~~g-~------~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~ 534 (538)
.... . -.+|++||+..|.+..+ .+.++-||.|.... +|-|++.+.
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence 4300 0 14689999999998876 44678999998542 587776654
No 203
>PLN02223 phosphoinositide phospholipase C
Probab=99.19 E-value=3.4e-10 Score=117.33 Aligned_cols=98 Identities=26% Similarity=0.424 Sum_probs=82.3
Q ss_pred eeEEEEEEEEecCCCc-----CCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEE
Q 046405 259 VGILNVKVLRAMKLKK-----KDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVY 331 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~-----~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~ 331 (538)
...|.|+|+.|++++. .+.....||||+|.+.|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4689999999998751 1223467999999996532 23457888889999999999999999998888999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
|+|..+.|+++|++.+|+..|..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998889999999999999999884
No 204
>PLN02270 phospholipase D alpha
Probab=99.19 E-value=1.9e-10 Score=124.01 Aligned_cols=115 Identities=17% Similarity=0.345 Sum_probs=97.6
Q ss_pred ceEEEEEEeeeccCCC---------------------CCCCCCeEEEEEcCeeE-EeecccCC-CCCcCcceEEEEecCC
Q 046405 417 GGLLVVILHEAQDVEG---------------------KYHTNPSARILFRGEEK-KTKRIKKN-RDPRWEEEFQFTLEEP 473 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~ 473 (538)
-|.|.++|.+|++|+. ++.+||||.|.+++.+. ||+++.+. .||+|+|+|..+|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4778888888888763 13579999999998775 99999885 6999999999999874
Q ss_pred CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC------CeEEEEEEEEEeC
Q 046405 474 PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK------NGRIQIELQWRAS 538 (538)
Q Consensus 474 ~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~wkp~ 538 (538)
...+.|.|.|.+- -+.++||.+.||..+++.++.++.||++.+.. ..+|+++++|+|+
T Consensus 87 --~~~v~f~vkd~~~-----~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDNP-----IGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCCc-----cCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4789999999873 34679999999999999998999999998752 3599999999985
No 205
>PLN02270 phospholipase D alpha
Probab=99.17 E-value=4e-10 Score=121.45 Aligned_cols=128 Identities=21% Similarity=0.331 Sum_probs=104.0
Q ss_pred eeEEEEEEEEecCCCcCC------------------CCCCCCcEEEEEEcCCCCCceeeeecCCC-CCceeeeEEEEEEe
Q 046405 259 VGILNVKVLRAMKLKKKD------------------LIGASDPYVKLKLTDDKLPSKKTTVKHRN-LNPEWNEEFGLVVK 319 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~ 319 (538)
.|.|.|+|.+|++|++.+ ..+.+||||.|.+++.+. .||+++.+. .||.|+|+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 599999999999998631 125789999999987665 599999875 69999999999998
Q ss_pred CCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC
Q 046405 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD 394 (538)
Q Consensus 320 ~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
.. ...+.|.|.|.|.++ ..+||.+.+|.+++..++..+.|+++...- .+..+....|+++++|.|...+
T Consensus 85 h~-~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HM-ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cC-cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 76 478999999999876 459999999999999998888999885421 1112333589999999998655
No 206
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.16 E-value=2.1e-10 Score=92.68 Aligned_cols=85 Identities=20% Similarity=0.447 Sum_probs=73.4
Q ss_pred HHHHHHHCh-hHH-HHHHHHHHHHHHHHHHh-cCCCceeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeEEeC
Q 046405 75 NKFIETMWP-FLD-KAICKTVRETVKPIIAE-QIPQYKIDSVEFEALTLGSLPPTFQGMKVYVT-DDKELIMEPLLKWAG 150 (538)
Q Consensus 75 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~p~i~~v~~~~~-~~~~~~ld~~~~~~~ 150 (538)
|.+++|++- +.+ +++.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++|+.+. .++++.+|+|+.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 677888654 333 68899999999999998 68999 99999999999999999999999864 455699999999999
Q ss_pred CCceEEEEEE
Q 046405 151 NPNILIAAKA 160 (538)
Q Consensus 151 ~~~i~l~~~~ 160 (538)
+..+.++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999888764
No 207
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.15 E-value=1.5e-11 Score=127.18 Aligned_cols=135 Identities=28% Similarity=0.486 Sum_probs=108.9
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC----------------------------CceeeeecCCC
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL----------------------------PSKKTTVKHRN 305 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~~T~v~~~t 305 (538)
..+.|.-.|.|.+.+|+||.++|.+|.||||+++.+.+... -.+-|++++.|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 44556667788889999999999999999999998743110 02468899999
Q ss_pred CCceeeeEEEEEEeCCCCCeEEEEEEecCC---------------------------------CCC---CCccEEEEEeC
Q 046405 306 LNPEWNEEFGLVVKDPEYQALELQVYDWEK---------------------------------VGH---HDKMGMNVIPL 349 (538)
Q Consensus 306 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~---------------------------------~~~---d~~lG~~~i~l 349 (538)
+||.|+|.|.|.+.+-.++.+++.+||+|+ .+. |||+|++.+|+
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 999999999999999889999999999982 123 89999999999
Q ss_pred ccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC
Q 046405 350 KDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD 394 (538)
Q Consensus 350 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
+++... +.+.|+.|..+.+ .++..|.+++.++.....+.
T Consensus 268 ~EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred hcCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeeccc
Confidence 999876 5677887765433 37889999999988766544
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.12 E-value=2.7e-10 Score=98.04 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=75.7
Q ss_pred EEEEEeeeccCCC-----CC--CCCCeEEEEEcC---eeEEeecccCCCC--CcCcceEEEEecCCCC------------
Q 046405 420 LVVILHEAQDVEG-----KY--HTNPSARILFRG---EEKKTKRIKKNRD--PRWEEEFQFTLEEPPT------------ 475 (538)
Q Consensus 420 L~v~v~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------ 475 (538)
|+|.|.+|+|++. .| .+||||++.+.+ ++++|.+.+++.| |+||+.|.|++...+.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 499999999976 3469999999999 9999999999876332
Q ss_pred ----------CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccc
Q 046405 476 ----------DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 476 ----------~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~ 513 (538)
...|.++|||.+. +++|++||.++++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence 2479999999986 789999999999999988654
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.12 E-value=5.7e-10 Score=91.35 Aligned_cols=97 Identities=28% Similarity=0.484 Sum_probs=82.2
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcC-eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRG-EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|.|++|++|.. .+..+|||.+++.+ ...+|++..++.||.||+.|.|.+... ....+.++|++.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence 4688999999975 35799999999998 778999999999999999999999863 45789999999975 346
Q ss_pred CCccEEEEEecchhc-ccceeceEEEc
Q 046405 496 KETLGYIGINLADVV-NNKRINEKYHL 521 (538)
Q Consensus 496 d~~lG~~~i~L~~l~-~~~~~~~~~~L 521 (538)
+.++|++.+++.++. .......|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceecC
Confidence 789999999999998 55556778765
No 210
>PLN02952 phosphoinositide phospholipase C
Probab=99.07 E-value=1.8e-09 Score=114.41 Aligned_cols=104 Identities=26% Similarity=0.408 Sum_probs=84.7
Q ss_pred eeEEEEEEEEecCCCcC------CCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEE
Q 046405 259 VGILNVKVLRAMKLKKK------DLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 330 (538)
...|.|+|+.|.+++.. +.....||||+|.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 11234599999999542 22346899999999999999999999988778899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||+|..+.|+++|++.+|+..|..+- .+++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCc
Confidence 99998889999999999999999885 255653
No 211
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.06 E-value=1.4e-09 Score=89.36 Aligned_cols=89 Identities=27% Similarity=0.518 Sum_probs=76.6
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEcCe---eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFRGE---EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+... ....|.++|||++. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~i~v~~~~~----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPP-ELAELEIEVYDKDR----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCc-ccCEEEEEEEecCC----c
Confidence 67899999999874 36899999999875 68999999999999999999999874 36889999999975 3
Q ss_pred CCCCccEEEEEecchhcccc
Q 046405 494 HPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~ 513 (538)
+++..+|.+.+++.++..+.
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 46899999999999987654
No 212
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.01 E-value=3.7e-09 Score=111.87 Aligned_cols=98 Identities=23% Similarity=0.314 Sum_probs=81.8
Q ss_pred eeEEEEEEEEecCCCc--C----CCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEE
Q 046405 259 VGILNVKVLRAMKLKK--K----DLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~--~----d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 330 (538)
..+|.|+|+.+.+++. . +.....||||+|.+-+-. ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998742 1 222356999999995421 2346889999999999999999999988888999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
+|+|..+.|+++|+..+|+..|..+-
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy 573 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI 573 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc
Confidence 99998889999999999999999884
No 213
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.01 E-value=1.1e-09 Score=113.94 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=99.4
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.-|.|.|.+|+||++. |..||||.|.++.+. .+|.++.+++.|-|.|.|.|.++. .-+.+.+-|||+| +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d-----~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRD-----L 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccc-----c
Confidence 4578999999999974 689999999998876 599999999999999999999975 3468999999998 6
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEEe
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWRA 537 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wkp 537 (538)
++|+.||.+.|.=.+|......+.||.|.... +|+|++++++.+
T Consensus 78 ~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ccccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 79999999999999998777889999998542 799999998865
No 214
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.93 E-value=1.3e-08 Score=107.71 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=81.0
Q ss_pred eeEEEEEEEEecCCC----cC--CCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEE
Q 046405 259 VGILNVKVLRAMKLK----KK--DLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~----~~--d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 330 (538)
...|.|+|+.+.+++ .. +.....||||+|.+.+- ...+++|+++.++.||.|||+|.|.+..++-..|+|+|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 12245699999999542 22346899999989999999999999988888999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
+|+|..+.|+++|++.+|+..|..|-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 99998888999999999999999884
No 215
>PLN02228 Phosphoinositide phospholipase C
Probab=98.92 E-value=1.7e-08 Score=106.57 Aligned_cols=124 Identities=21% Similarity=0.314 Sum_probs=93.3
Q ss_pred eEEEEEEEEecCCCc---C---CCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCcee-eeEEEEEEeCCCCCeEEEEE
Q 046405 260 GILNVKVLRAMKLKK---K---DLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEW-NEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 260 G~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~v 330 (538)
..|+|+|++|++|+. . +.....||||+|.+.+- ...+++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 11234799999999542 223468999988899999 99999999988888999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
+|+|..+.|+++|++.+|+..|..+-. ..+|.... ...-...+|.+.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~-----G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA-----GKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC-----CCCCCCeEEEEEEEEcCc
Confidence 999988899999999999999988732 33442211 112234678888877654
No 216
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.92 E-value=7e-09 Score=109.75 Aligned_cols=121 Identities=23% Similarity=0.400 Sum_probs=91.3
Q ss_pred EEEEEEEEecCCCcCC-C---CCCCCcEEEEEEcCCC--CCceeee-ecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 261 ILNVKVLRAMKLKKKD-L---IGASDPYVKLKLTDDK--LPSKKTT-VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d-~---~g~~dpyv~v~~~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
+|.|+|+++.++...- . ...+||||.|.+-|-. ....+|+ +..++-||.|+|+|+|.+..|+-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999776432 1 2457999999985422 2245888 666888999999999999999889999999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
|..++|||+|+.++|+..|..|-.+ .+|.... ...-...+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~-----G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSRE-----GEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCCC-----CccccceeEEEEEEEe
Confidence 9999999999999999999988433 2332210 1123445666766654
No 217
>PLN02223 phosphoinositide phospholipase C
Probab=98.89 E-value=2.3e-08 Score=103.91 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=87.9
Q ss_pred CceEEEEEEeeeccCCC--------CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 416 GGGLLVVILHEAQDVEG--------KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--------~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
....|.|+|+.|++++. ...+||||+|.+.| ..++|++..++.||+|||.|+|.+..+ .-..|.|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence 35689999999998741 12579999999965 245788778899999999999999874 56789999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
|+|++. .+.|+++|+..+|++.+..+- +..+|.+.. .-++-++++|
T Consensus 486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEV----STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCC----CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999985 367899999999999987653 667876542 3566676665
No 218
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.86 E-value=6.2e-09 Score=84.05 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=70.9
Q ss_pred EEEEEEEecCCCcCC---CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 262 LNVKVLRAMKLKKKD---LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 262 L~V~v~~A~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
|.|+|..|+|+...+ ..+.+||||.+.+++.. +.||+. +.||.|||+|.|.+. ....+.+.|||.. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~-~~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKG-GDQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCC-CCe
Confidence 679999999998877 56888999999998654 347765 579999999999994 3678999999985 345
Q ss_pred CCccEEEEEeCccCCCC
Q 046405 339 HDKMGMNVIPLKDITPE 355 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~ 355 (538)
.-.+|...+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 66899999999888754
No 219
>PLN02952 phosphoinositide phospholipase C
Probab=98.76 E-value=1.1e-07 Score=100.95 Aligned_cols=100 Identities=23% Similarity=0.253 Sum_probs=81.9
Q ss_pred ceEEEEEEeeeccCCC--C-------CCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 417 GGLLVVILHEAQDVEG--K-------YHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|.|+.|++++. . ..+||||+|.+-| .+++|+++.++.||+|||.|+|.+..+ .-..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~P-ELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVP-ELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcC-CccEEEEE
Confidence 4689999999988742 1 2359999999865 356999999999999999999999874 55679999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
|+|++. .+.++++|+..+|++.+..+- +|.+|.+.
T Consensus 548 V~D~D~----~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 548 VREYDM----SEKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred EEecCC----CCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 999875 457899999999999987754 58899754
No 220
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.75 E-value=3.3e-09 Score=110.16 Aligned_cols=97 Identities=32% Similarity=0.445 Sum_probs=84.1
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCC----CCCeEEEE
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDP----EYQALELQ 329 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v~ 329 (538)
+...|.|.|+.|+++.+-|.+|.|||||++.+++.. ....+|+|+..|+||+|+|+|+|.|... +...+.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 445677778899999999999999999999998754 3456999999999999999999999643 25679999
Q ss_pred EEecCCCCCCCccEEEEEeCccCCC
Q 046405 330 VYDWEKVGHHDKMGMNVIPLKDITP 354 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~ 354 (538)
|+|+|-.+.+||-|++.+.|.++..
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999988864
No 221
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.70 E-value=9.6e-09 Score=110.68 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=152.0
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---------CCCeEEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---------EYQALELQ 329 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~ 329 (538)
.-.+++.|.+|++|...+..+.+|||+.+.+.++.. .|.++.+|+||.|+++..|.-.+. .-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~---~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSK---ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccc---eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 446778888999999999999999999999987654 899999999999999988752211 13568899
Q ss_pred EEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC-CCCCCCCCCCCccC
Q 046405 330 VYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD-EIPPDMDGPNSVQK 408 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~-~~~~~~~~~~~~~~ 408 (538)
+||.++.+.++++|++.....-... .+.-.|.+.++. +...|++.++......... .-+...+ +.-..-
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg--------~~l~gd~l~a~eliq~~~~i~~p~~~~-~~~~~~ 351 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRG--------AFLDGDVLIAAELIQIGKPIPQPPPQR-EIIFSL 351 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeecc--------cccccchhHHHHHHhhcCCCCCCCccc-ccceec
Confidence 9999999999999998765544333 345566666442 3445555544322111100 0000000 000001
Q ss_pred CCC--CCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeeccc-CCCCCcCcceEEEEecCCCC----CCe
Q 046405 409 APE--GTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIK-KNRDPRWEEEFQFTLEEPPT----DDK 478 (538)
Q Consensus 409 ~~~--~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~----~~~ 478 (538)
.|. .+....+.+.|--..-+|.... ....|-+-+.++++..++-.+. .-.||.|+..|.+.....|. ...
T Consensus 352 vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~pp 431 (1105)
T KOG1326|consen 352 VPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPP 431 (1105)
T ss_pred cccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCcc
Confidence 111 1223445555555555666542 3578999999999988776665 47899999877666654443 348
Q ss_pred EEEEEEEccCCCCCCCCCCccEEEEEe
Q 046405 479 LHVEVISTSSRMGLLHPKETLGYIGIN 505 (538)
Q Consensus 479 l~v~V~d~~~~~g~~~~d~~lG~~~i~ 505 (538)
+.++|+|.+. ++.-+++|++.+.
T Consensus 432 l~akvvd~~~----fg~~~v~g~c~i~ 454 (1105)
T KOG1326|consen 432 LNAKVVDLRQ----FGRMEVVGQCKIL 454 (1105)
T ss_pred ceeEEEeccc----ccceeehhhhcch
Confidence 9999999874 6788899998876
No 222
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.69 E-value=2.1e-07 Score=96.00 Aligned_cols=178 Identities=19% Similarity=0.299 Sum_probs=126.2
Q ss_pred eeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC----CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCC
Q 046405 297 KKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK----VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPND 372 (538)
Q Consensus 297 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~ 372 (538)
.+|.++.+.+||.|.+.|.+.......|.++++++|-+. ...++|+|++...+..+.........+.+..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 489999999999999999998887778999999999764 3567899999999999876543322222211
Q ss_pred CCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc--Ce
Q 046405 373 TRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR--GE 447 (538)
Q Consensus 373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~~ 447 (538)
......|+|.+.+.=.-. .....-...+|++|..+ +++|||..++-. ..
T Consensus 117 -~~~~~~g~iti~aee~~~-------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~ 170 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDES-------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG 170 (529)
T ss_pred -CccCCcccEEEEeecccc-------------------------cCceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence 124456777777622110 11122223568888764 589999999863 22
Q ss_pred ----eEEeecccCCCCCcCcceEEEEecCC---CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc
Q 046405 448 ----EKKTKRIKKNRDPRWEEEFQFTLEEP---PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 448 ----~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
.++|.+++++.||.|.+ |....... ..+..+.++++|.+.. ++++++|++..++.++..
T Consensus 171 s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 171 STQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHhcc
Confidence 24999999999999987 33332221 1346899999999864 567999999999998864
No 223
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.69 E-value=3.9e-08 Score=99.91 Aligned_cols=119 Identities=27% Similarity=0.432 Sum_probs=96.2
Q ss_pred eEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceee-eEEEEEEeCC--CCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWN-EEFGLVVKDP--EYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~v~d~~~ 335 (538)
|.|-|+|..|++|+-+|.. ...|.||.+.+++... +|.+..+++||.|| +.|.|.+.+. +...|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7889999999999998864 4679999999987665 89999999999999 6799998754 36789999999999
Q ss_pred CCCCCccEEEEEeCccCCCCC----------CceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 336 VGHHDKMGMNVIPLKDITPEE----------PREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~----------~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.+.+|-||++.+++..|.-++ -..-|++++..+ ...+|+|.+-+..
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkv 135 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKV 135 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEE
Confidence 999999999999999886432 123677775433 3457888776543
No 224
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.67 E-value=7.6e-08 Score=101.37 Aligned_cols=126 Identities=25% Similarity=0.408 Sum_probs=95.4
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC---CceeeeecCCCCCceee-eEEEEEEeCCCCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL---PSKKTTVKHRNLNPEWN-EEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
-.|.|.|+.|+.|+... .|-..|||+|.+-+... ..++|.+..+++||+|| |.|+|.+.+|+-..|++.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 57889999999999543 35567999999965331 22466677899999999 999999999998999999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD 394 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
++...|||++.+|+..+..+- + ..+|.... ...-....|.+.+...|....
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf-R--sVpLkN~y-----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF-R--SVPLKNGY-----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccc-e--eeecccCc-----hhhhhhhhheeeeEeccccCc
Confidence 998899999999999998762 1 22221110 012334667788888877544
No 225
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.67 E-value=9.4e-08 Score=77.27 Aligned_cols=82 Identities=22% Similarity=0.443 Sum_probs=68.0
Q ss_pred EEEEEeeeccCCC------CCCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 420 LVVILHEAQDVEG------KYHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 420 L~v~v~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
|.|+|+.|+|+.. .+.++|||.+.+++. +.||++ +.||.|||.|+|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999965 357899999999987 568887 4899999999999953 4679999999863
Q ss_pred CCCCCccEEEEEecchhccc
Q 046405 493 LHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~ 512 (538)
...--+|-.=+.+++|.+.
T Consensus 71 -~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred -CeecceeeehhhHHHHHHH
Confidence 2445799999999999863
No 226
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.63 E-value=4.5e-08 Score=106.79 Aligned_cols=118 Identities=24% Similarity=0.321 Sum_probs=95.2
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~ 447 (538)
++..|+|+++++|. .|.|.|.|.-|++|+- ...+||||+.++.. .
T Consensus 1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence 55677999999995 6899999999999853 34799999999954 2
Q ss_pred eEEeecccCCCCCcCcceEEEEec-CCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLE-EPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~-~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
++||+++++|.||.|||...+.-. ... ....|.+.||..+. +..+.++|.+.|+|.++...+....||.|...
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 469999999999999998877621 111 23579999999874 56789999999999998877666799999653
No 227
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.63 E-value=4.4e-07 Score=96.25 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=86.2
Q ss_pred ceEEEEEEeeeccCC----C-----CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 417 GGLLVVILHEAQDVE----G-----KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~----~-----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|+|+.|++++ . ....||||+|.+-| .+++|+++.++.||+|||.|+|.+..+ .-..+.|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEEE
Confidence 467999999998742 1 12579999999954 346999999989999999999998874 55789999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
|+|++. .+.|+++|+..+|++.+..+ -+..+|.+.. ...+-+.++|
T Consensus 530 V~d~D~----~~~ddfigq~~lPv~~Lr~G---yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDM----SEKDDFGGQTCLPVWELSQG---IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCC----CCCCcEEEEEEcchhhhhCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence 999874 45789999999999998664 2456776542 3566666665
No 228
>PLN02352 phospholipase D epsilon
Probab=98.62 E-value=4.7e-07 Score=97.91 Aligned_cols=121 Identities=16% Similarity=0.281 Sum_probs=91.9
Q ss_pred ceeEEEEEEEEecCCCcC----CCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEe
Q 046405 258 PVGILNVKVLRAMKLKKK----DLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD 332 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 332 (538)
-.|.|.++|.+|+-+... +.. ...||||.+.+++.++ .|| .+..||.|+|+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999843321 111 2239999999987665 467 556699999999999987754679999988
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCC-ceEEEeccccCCCCCCCCCccc-cEEEEEEEEEeecCC
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEP-REMTLDLLKNMDPNDTRNEKSR-GQVVVEVLYKPFKGD 394 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 394 (538)
...+||.+.+|..++..++. .+.|+++...- . +... ..|+++++|.|....
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~----~--~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN----G--KPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC----C--CCCCCCEEEEEEEEEEhhhC
Confidence 26799999999999998865 78899985421 1 1122 599999999998665
No 229
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.61 E-value=4.4e-07 Score=96.36 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=86.7
Q ss_pred ceEEEEEEeeeccCCC--C-------CCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 417 GGLLVVILHEAQDVEG--K-------YHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|+|+.|++++. . ..+||||+|.+-| .+++|++..++.||+|||.|+|.+..+ .-..|.|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEEEE
Confidence 4679999999998642 1 2479999999954 235889888999999999999999874 56789999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
|+|++. ..+|+++|+..+|+..|..+= +..+|.+.. ..++-++++|
T Consensus 547 V~d~d~----~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDI----NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCC----CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999975 367999999999999986643 456776542 3466666665
No 230
>PLN02352 phospholipase D epsilon
Probab=98.60 E-value=3e-07 Score=99.41 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=86.5
Q ss_pred CceEEEEEEeeeccCCC--------CCCCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEG--------KYHTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--------~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
--|.|.++|.+|+-+.. ....+|||.|.+++.+. || .+..||+|+|+|..+|... ....+.|.|.|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~ 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC
Confidence 35777777777763211 01239999999988765 88 5567999999999999874 335799999883
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccce-eceEEEcCCCC----C-eEEEEEEEEEeC
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNKR-INEKYHLIDSK----N-GRIQIELQWRAS 538 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~L~~~~----~-G~i~l~~~wkp~ 538 (538)
-++||.+.||..+++.++. ++.||++.+.. . .+|+++++|+|+
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 3799999999999999765 99999998752 2 599999999985
No 231
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.55 E-value=2.6e-07 Score=93.97 Aligned_cols=114 Identities=19% Similarity=0.387 Sum_probs=94.5
Q ss_pred ceEEEEEEeeeccCCCC----CCCCCeEEEEEcCeeEEeecccCCCCCcCcc-eEEEEecCCCC-CCeEEEEEEEccCCC
Q 046405 417 GGLLVVILHEAQDVEGK----YHTNPSARILFRGEEKKTKRIKKNRDPRWEE-EFQFTLEEPPT-DDKLHVEVISTSSRM 490 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne-~f~f~v~~~~~-~~~l~v~V~d~~~~~ 490 (538)
.|.+.|.|..|++||.. ...|.||++.+++..+||.+..++.||.||. -|.|.+.+... .++|.|.++|+++
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 47889999999999863 4679999999999999999999999999994 69999987643 4589999999997
Q ss_pred CCCCCCCccEEEEEecchhccc----------ceeceEEEcCCC---CCeEEEEEEE
Q 046405 491 GLLHPKETLGYIGINLADVVNN----------KRINEKYHLIDS---KNGRIQIELQ 534 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~----------~~~~~~~~L~~~---~~G~i~l~~~ 534 (538)
-+.++.||.+.|+++.+.-. .-+..|||+.+. -+|+|.+-++
T Consensus 80 --ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 80 --YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred --cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 46889999999999887631 236899999876 2688876543
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.47 E-value=2.3e-06 Score=90.61 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=87.6
Q ss_pred ceEEEEEEeeeccCCC----C-----CCCCCeEEEEEcC-----eeEEeecccCCCCCcC-cceEEEEecCCCCCCeEEE
Q 046405 417 GGLLVVILHEAQDVEG----K-----YHTNPSARILFRG-----EEKKTKRIKKNRDPRW-EEEFQFTLEEPPTDDKLHV 481 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~----~-----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v 481 (538)
...|.|+|++|++|+. . ...||||+|.+-| .+++|++++++.||+| ||.|+|.+..+ .-..+.|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~p-ELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVP-ELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcC-ceeEEEE
Confidence 4579999999998731 1 2479999999854 2459999988899999 99999999874 5578999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEEe
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWRA 537 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wkp 537 (538)
.|+|++. .+.|+++|+..+|++.|..+ -+..+|.+.. ..++-+++.+.|
T Consensus 509 ~V~D~d~----~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYDN----DTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCCC----CCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999874 46789999999999998554 3566776542 466777776654
No 233
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.39 E-value=2.3e-06 Score=91.09 Aligned_cols=111 Identities=18% Similarity=0.298 Sum_probs=86.7
Q ss_pred EEEEEEeeeccCCCC-------CCCCCeEEEEEcCe-----eEEee-cccCCCCCcCcceEEEEecCCCCCCeEEEEEEE
Q 046405 419 LLVVILHEAQDVEGK-------YHTNPSARILFRGE-----EKKTK-RIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIS 485 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~-v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d 485 (538)
.|.|.|..++++... ..+||||.|.+-|- ..+|+ +..++-||.|+|.|+|.+..+ .-+-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEEEe
Confidence 899999999976531 35899999998663 35899 556789999999999999985 56789999999
Q ss_pred ccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEEEe
Q 046405 486 TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQWRA 537 (538)
Q Consensus 486 ~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~wkp 537 (538)
++. .++|+++|+.++|++.+..+= +-.+|.+. ..-++-++++|.+
T Consensus 696 ~d~----~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 696 YDY----IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cCC----CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence 986 467999999999999986642 44555543 2466777777653
No 234
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.38 E-value=5e-07 Score=75.26 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=77.1
Q ss_pred EEEEEeeeccCCCC----------------CCCCCeEEEEEc----CeeEEeecccCCCCCcCcceEEEEecCC------
Q 046405 420 LVVILHEAQDVEGK----------------YHTNPSARILFR----GEEKKTKRIKKNRDPRWEEEFQFTLEEP------ 473 (538)
Q Consensus 420 L~v~v~~a~~L~~~----------------~~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~------ 473 (538)
|.|.|++|.+|... =..|+||++.+. ++.++|+++-++--|.|+.+++|+|.-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46788888887631 146899999963 4567999999999999999999999711
Q ss_pred --------CCCCeEEEEEEEccCCC-C-----CCCCCCccEEEEEecchhccc-ceeceEEEc
Q 046405 474 --------PTDDKLHVEVISTSSRM-G-----LLHPKETLGYIGINLADVVNN-KRINEKYHL 521 (538)
Q Consensus 474 --------~~~~~l~v~V~d~~~~~-g-----~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 521 (538)
-....+.++||.+.... + .-.+|-.||.+.||+.+++.+ ..+..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11347899999886431 0 013456899999999999975 478999985
No 235
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.28 E-value=5.1e-07 Score=98.84 Aligned_cols=106 Identities=25% Similarity=0.231 Sum_probs=88.4
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEE---EeCCCCCeEEEEEEec
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV---VKDPEYQALELQVYDW 333 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~v~d~ 333 (538)
.|+|.|-|..|++|+--..+..+||||+.++.+. +..++||++.++|.||+|||...+. ........|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 6899999999999975554567899999999654 3456799999999999999987765 2223357899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+....+.++|.+.++|.++...++...|+.+
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9999999999999999999887776678876
No 236
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.24 E-value=6.9e-06 Score=87.05 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=79.0
Q ss_pred eEEEEEEeeeccCCCC--CCCCCeEEEEEcCe-----e-EEeecccCCCCCcCc-ceEEEEecCCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEGK--YHTNPSARILFRGE-----E-KKTKRIKKNRDPRWE-EEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~-----~-~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
-.|.|.|+.|+.|+.. +...|||+|.+-|. + ++|.++.+..||+|| |.|+|.+.++ .-.-|.+.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEecccc
Confidence 4788999999999974 45679999998542 3 355667789999999 9999999995 66789999999973
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
++...+||+++.|+..+..+ -+..+|.+.
T Consensus 1144 ----fs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ 1172 (1267)
T KOG1264|consen 1144 ----FSDPNFLAQATYPVKAIKSG---FRSVPLKNG 1172 (1267)
T ss_pred ----cCCcceeeeeecchhhhhcc---ceeeecccC
Confidence 77888999999999987553 245566543
No 237
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=4.4e-06 Score=80.41 Aligned_cols=96 Identities=33% Similarity=0.446 Sum_probs=79.4
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEE
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQ 329 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 329 (538)
.++....-|.|++++|..|..+|.+|.+||||..++.+. ..-+++|.+.++|.||.||+.|.|.+... ....+.|.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 345567789999999999999999999999999998643 23357899999999999999999988533 36789999
Q ss_pred EEecCCCCCCCccEEEEEeC
Q 046405 330 VYDWEKVGHHDKMGMNVIPL 349 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l 349 (538)
|||++..+..+++|-+....
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999887889988866443
No 238
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.02 E-value=4.7e-06 Score=64.48 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=67.5
Q ss_pred EEEEEEecCCCcCCCCC-CCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCCCCC
Q 046405 263 NVKVLRAMKLKKKDLIG-ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKVGHH 339 (538)
Q Consensus 263 ~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~~~d 339 (538)
.|++++|+||.-....| .+.-|++=-+.-.+.-..||+++++..||+|+|+|.|.+... ..-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 58999999997554333 334566544422222236899999999999999999988643 35578888888 46788
Q ss_pred CccEEEEEeCccCCCC
Q 046405 340 DKMGMNVIPLKDITPE 355 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~ 355 (538)
+.||.|.+.++++.++
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999998765
No 239
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.00 E-value=0.0015 Score=65.42 Aligned_cols=231 Identities=14% Similarity=0.224 Sum_probs=152.0
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC-------CCCCeEEEEEEecC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD-------PEYQALELQVYDWE 334 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-------~~~~~L~v~v~d~~ 334 (538)
+.|+|+++++.+... ...-.+..++++... .|..+..+..|.||......+.. .....|++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998762 345677788887766 67778889999999988888752 23678999999988
Q ss_pred -CCCCCCccEEEEEeCccC---CCC--CCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCC-----CC--
Q 046405 335 -KVGHHDKMGMNVIPLKDI---TPE--EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPD-----MD-- 401 (538)
Q Consensus 335 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~-----~~-- 401 (538)
..+..+.+|.+.++|+.. ..+ .....|++|....+ +-.+.+-+|.+.+...........+. ..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 557888999999999999 544 45668888864321 11334567888777765443211000 00
Q ss_pred -CCCC-------ccC----------------CCCCCCCCceEEEEEEeeeccCCCC---------CCCCCeEEEEEcCee
Q 046405 402 -GPNS-------VQK----------------APEGTPEGGGLLVVILHEAQDVEGK---------YHTNPSARILFRGEE 448 (538)
Q Consensus 402 -~~~~-------~~~----------------~~~~~~~~~g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~ 448 (538)
.... .+. .|.+.....-.|.|++..|+||..- +...-|...++-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 000 0111112344788888899987541 123446666777888
Q ss_pred EEeecccCCCCCcCc--ceEEEEecCC--------CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc
Q 046405 449 KKTKRIKKNRDPRWE--EEFQFTLEEP--------PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 449 ~kT~v~~~t~nP~wn--e~f~f~v~~~--------~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
..|...+...+|.|. +...+.+... .....|.|.++.. +..||.+.+++..++.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccC
Confidence 888888888889775 3332555532 1234677777653 4789999999999974
No 240
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.78 E-value=9.8e-05 Score=77.13 Aligned_cols=225 Identities=15% Similarity=0.245 Sum_probs=150.9
Q ss_pred CCCCCccCCCC-------CchHHHHHHHHHHCh------hHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEEeCCCCC
Q 046405 58 EIPLWVKNPDY-------DRVDWLNKFIETMWP------FLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGSLP 124 (538)
Q Consensus 58 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~ 124 (538)
+.|.|...-.. -.|-.+|.+++.++. ....++.+.+...++.++.....+-.++.+++.++-||.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 68888865221 245556777777765 23455556666666666666433323899999999999999
Q ss_pred CeEeeeEEEecC------------C-------------CeEEEEeeeEEeCCCceEEEEEE-cceeEEEEEEEEEEEEEE
Q 046405 125 PTFQGMKVYVTD------------D-------------KELIMEPLLKWAGNPNILIAAKA-FGLKATVQVVDLQVFAFP 178 (538)
Q Consensus 125 p~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~ 178 (538)
|.+++.+++.-+ + ..+.+=+++.|.|+..-++++.. .+.+..+.|+-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998611 1 12345578899998877777765 233444555677999999
Q ss_pred EEEeecCCCCCCeeeEEEEEcCCCCeEEEEEeE--ecccccccccHHHHHHHHHHHHHhhhccCCCcee-------eccc
Q 046405 179 RITLKPLVPTFPCFANIYVSLMEKPHVDFGIKL--FGADAMAIPGLYTYVQGLIKDQVANMYLWPKALE-------VQIM 249 (538)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~--~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~-------~pl~ 249 (538)
|+.+. ..|+ .+++++|+..|.+..+++. .| +-|. -.+...|.+.++..+.....||++-- .|+-
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg-~qLQ-~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQG-HQLQ-RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHH-HHHH-HHhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99986 4466 8899999999988655543 22 2110 11335566677777778888998421 1222
Q ss_pred cccc-----ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC
Q 046405 250 DPAK-----AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD 291 (538)
Q Consensus 250 ~~~~-----~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~ 291 (538)
.... -.-.+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 1111 123568999999999988864 457788999998854
No 241
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.76 E-value=4.1e-05 Score=79.43 Aligned_cols=88 Identities=26% Similarity=0.524 Sum_probs=71.7
Q ss_pred EEEecCCCcCCCCCCCCcEEEEEEc---CCCCCceeeeecCCCCCceeeeEEEEEEeCCC----CCeEEEEEEecCCCCC
Q 046405 266 VLRAMKLKKKDLIGASDPYVKLKLT---DDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE----YQALELQVYDWEKVGH 338 (538)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~~~~ 338 (538)
..+|++|.++|..+++|||..++-. +.....++|++.++++||.|.+ |.+...... ...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 2334457999999999999994 555544332 4678999999999999
Q ss_pred CCccEEEEEeCccCCC
Q 046405 339 HDKMGMNVIPLKDITP 354 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~ 354 (538)
++++|.+..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999999975
No 242
>PLN02964 phosphatidylserine decarboxylase
Probab=97.71 E-value=4.1e-05 Score=82.56 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=74.8
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEE-EEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKL-KLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v-~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
.+.-.|+..+++++|+ ++. .|||..+ ++|.+. +||.+.++|.||+||+...|.+...+....++.|||.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred cccccCeEEEEeehhh----hcc---CCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence 3456799999999997 332 4887655 555444 4999999999999999999999876666679999999
Q ss_pred CCCCCCCccEEEEEeCccCCCC
Q 046405 334 EKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+.++.++++|.|+++|.++...
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCCHHHhhhheeecHhhccHH
Confidence 9999999999999988777654
No 243
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.69 E-value=4.1e-05 Score=75.71 Aligned_cols=118 Identities=21% Similarity=0.309 Sum_probs=94.3
Q ss_pred CceEEEEEEeeeccCCCC---CCCCCeEEEEEc-----CeeEEeecccCCCCCcCcceEEEEecCCCC----------CC
Q 046405 416 GGGLLVVILHEAQDVEGK---YHTNPSARILFR-----GEEKKTKRIKKNRDPRWEEEFQFTLEEPPT----------DD 477 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~----------~~ 477 (538)
....|++.|.++++++.- ...|.|+++.+. .++.+|.+++.|.+|.|+|.|...+...+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 456788888899887652 356789998873 234599999999999999999999986322 22
Q ss_pred eEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC---CeEEEEEEEEE
Q 046405 478 KLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK---NGRIQIELQWR 536 (538)
Q Consensus 478 ~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~wk 536 (538)
-+.|+++.+. |++++|.++|.+++.|.-|.....+...++|.+.. +|++.+++..|
T Consensus 445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeecc---ccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 6899999886 46889999999999999888777889999998763 69998888765
No 244
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.58 E-value=5.5e-05 Score=58.69 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=67.0
Q ss_pred EEEEeeeccCCC--C--CCCCCeEEEEE--cCe-eEEeecccCCCCCcCcceEEEEecCCCCC-CeEEEEEEEccCCCCC
Q 046405 421 VVILHEAQDVEG--K--YHTNPSARILF--RGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTD-DKLHVEVISTSSRMGL 492 (538)
Q Consensus 421 ~v~v~~a~~L~~--~--~~~dpyv~v~~--~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~g~ 492 (538)
-+++.+|+||.- . .++.-|++-.+ ..- ..||...+.+.||+|.|+|.|.+...... -.|.+.|+..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------ 75 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------ 75 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------
Confidence 368899999853 2 23445666544 232 24999999999999999999998754333 3688889884
Q ss_pred CCCCCccEEEEEecchhcccceeceEEE
Q 046405 493 LHPKETLGYIGINLADVVNNKRINEKYH 520 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 520 (538)
+.+++.||.+.++|+++-..+ ..+|-+
T Consensus 76 ~~RKe~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 76 TPRKRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred CCccceeeEEEeecccCCHHH-hhhhhc
Confidence 457899999999999875543 356643
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.47 E-value=0.00016 Score=60.60 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=71.9
Q ss_pred EEEEEEEecCCCcCCC---------C----CCCCcEEEEEEc--CCCCCceeeeecCCCCCceeeeEEEEEEe-------
Q 046405 262 LNVKVLRAMKLKKKDL---------I----GASDPYVKLKLT--DDKLPSKKTTVKHRNLNPEWNEEFGLVVK------- 319 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~---------~----g~~dpyv~v~~~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~------- 319 (538)
|.|.|++|.+|+..-. . -.-++||++.+. ++. ..++|+++-++--|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4678899999875321 0 123799999863 333 3468999999999999999999875
Q ss_pred -C-------CCCCeEEEEEEecCCC----------CCCCccEEEEEeCccCCCCC-CceEEEe
Q 046405 320 -D-------PEYQALELQVYDWEKV----------GHHDKMGMNVIPLKDITPEE-PREMTLD 363 (538)
Q Consensus 320 -~-------~~~~~L~v~v~d~~~~----------~~d~~lG~~~i~l~~l~~~~-~~~~~~~ 363 (538)
+ .+...+.++||+++.. .+|-.||.+.+|+.+|.... +-..|++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~p 142 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYP 142 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCcccccc
Confidence 1 1256899999997642 24568999999999987543 3334443
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.43 E-value=0.00024 Score=76.82 Aligned_cols=100 Identities=21% Similarity=0.354 Sum_probs=78.5
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEE-EEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSAR-ILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~-v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
-+|+..+++++|+ ....|||.. +++|.+..||...++|.||+||+...|.+... ...-..+.|+|.++ ++
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNR----LS 122 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCC----CC
Confidence 4799999999998 233588654 56777889999999999999999999999764 33457999999986 78
Q ss_pred CCCccEEEEEecchhcccc--eeceEEEcCCC
Q 046405 495 PKETLGYIGINLADVVNNK--RINEKYHLIDS 524 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 524 (538)
.++.+|.++++|.++...+ .+.+-|.+.+.
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~ 154 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEPESACESFDLLDP 154 (644)
T ss_pred HHHhhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence 9999999999998887654 23344555543
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.00042 Score=68.22 Aligned_cols=109 Identities=25% Similarity=0.378 Sum_probs=85.1
Q ss_pred CceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEe-
Q 046405 257 KPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD- 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d- 332 (538)
..+|.|.|.|++|++|..+... ..++|||+|++.+. ...+.+|+...+|.+|-+.+...|.-. +....|.+.+|-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 4589999999999999866433 36799999999543 345568898899999988777666653 446789999984
Q ss_pred cCCCCCCCccEEEEEeCccCCCCC-CceEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEE-PREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~~ 366 (538)
+.++.++.|+|.+.+-+.+|.... ....|+++..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 566777889999999999998765 6667887754
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.00063 Score=67.01 Aligned_cols=104 Identities=24% Similarity=0.320 Sum_probs=84.6
Q ss_pred CceEEEEEEeeeccCCCC----CCCCCeEEEEEcCe-----eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEGK----YHTNPSARILFRGE-----EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
..|-+.|.|++|++|..+ ..++|||+|++-.. +.+|+..++|.+|.|.+...|.-. |....|.+.||.+
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s--p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS--PPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC--CCccEEEEEEecc
Confidence 568899999999999652 37899999998543 359999999999999888777654 3456899999966
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccc-eeceEEEcCCC
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNK-RINEKYHLIDS 524 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 524 (538)
- |.+..+.++|.+++-+.++-... -...||+|-++
T Consensus 345 y---gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 Y---GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred c---cccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 4 34778999999999999987655 57899999875
No 249
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.89 E-value=0.0091 Score=59.88 Aligned_cols=102 Identities=16% Similarity=0.354 Sum_probs=84.0
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCC------CCCCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEP------PTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~------~~~~~l~v~V~d~~~~~g~~ 493 (538)
+.+.|.+|++.+......-.+..+++++...|..+.++..|.||....+.+... ..+.+|+++++.-+.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 578899999999865667789999999999999999999999999999988743 2345899999887622 3
Q ss_pred CCCCccEEEEEecchh---ccc--ceeceEEEcCCC
Q 046405 494 HPKETLGYIGINLADV---VNN--KRINEKYHLIDS 524 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l---~~~--~~~~~~~~L~~~ 524 (538)
+..+.+|++.++|..+ ..+ .....||+|.+.
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 5678999999999998 443 356899999887
No 250
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.88 E-value=0.026 Score=50.39 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=61.0
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 333 (538)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|++. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 4688998876 433321 12343333 367999999999875 2 3367899999997
Q ss_pred CCCC----CCCccEEEEEeCccC
Q 046405 334 EKVG----HHDKMGMNVIPLKDI 352 (538)
Q Consensus 334 ~~~~----~d~~lG~~~i~l~~l 352 (538)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999888773
No 251
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.79 E-value=0.0015 Score=65.04 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=91.8
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEc--CCCCCceeeeecCCCCCceeeeEEEEEEeCCC-----------C
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLT--DDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-----------Y 323 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-----------~ 323 (538)
.....|.+.|+++.+++........|-|+++.+. +....+.+|.++++|.+|.|+|.|.+.+.... .
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3455777888888887754433345788888772 22333458999999999999999999986511 3
Q ss_pred CeEEEEEEecCC-CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 324 QALELQVYDWEK-VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 324 ~~L~v~v~d~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
..++|++|++.. +.+|.++|.|.+.|..|...-..+..+++... .....|.|.+.+...
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 468999999865 46788999999999999877666667776431 245668888887664
No 252
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.65 E-value=0.041 Score=48.54 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=87.3
Q ss_pred CCceEEEEEEeeeccCCC-----CCCCCC--eEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCC------------C
Q 046405 415 EGGGLLVVILHEAQDVEG-----KYHTNP--SARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP------------T 475 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~-----~~~~dp--yv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~ 475 (538)
.....|++.|..++-.-. .+..+. ++-+.+++++++|+.+.-+.+|.|+|.|-|.+.... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 356789999999885422 123333 444556889999999999999999999999998642 1
Q ss_pred CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccccee--ceEEEcCCC------CCeEEEEEEEEEeC
Q 046405 476 DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRI--NEKYHLIDS------KNGRIQIELQWRAS 538 (538)
Q Consensus 476 ~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~L~~~------~~G~i~l~~~wkp~ 538 (538)
.+.+++-|.-.+.. +...++|+-.+....++..+.. .-...|.+. ..|-+.+++...|.
T Consensus 86 ~~pihivli~~d~~----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPS----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCC----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 34788888876642 3448999999999999986643 444556543 25888888888774
No 253
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.59 E-value=0.015 Score=51.94 Aligned_cols=90 Identities=24% Similarity=0.329 Sum_probs=63.6
Q ss_pred eEEEEEEeeeccCCCCCCCCCeEEEEE--cCeeE----EeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccCC
Q 046405 418 GLLVVILHEAQDVEGKYHTNPSARILF--RGEEK----KTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSSR 489 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~--~~~~~----kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~~ 489 (538)
..++|.|++|.++.-....+-||++.+ |++.. .|+.+. ..++.|||-.+|.+. +.|.+..|.|.||+...+
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 468899999999877656778888855 44432 444444 378999998888664 557788999999997642
Q ss_pred CCCCCCCCccEEEEEecch
Q 046405 490 MGLLHPKETLGYIGINLAD 508 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~L~~ 508 (538)
.+.-.....+|.++++|-+
T Consensus 87 ~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cCCCCceEEEEEEEEEEEC
Confidence 1100123569999999977
No 254
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.08 E-value=0.27 Score=43.11 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=79.7
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeC--------CCCCeEEE
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKD--------PEYQALEL 328 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~--------~~~~~L~v 328 (538)
..-.+.|++++..+++.. ...-|++...+.......+|.... .+..-.|||.|.+.+.- .+...+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 455788999999988862 223455554443321122333332 34457899999987641 12456889
Q ss_pred EEEecCCCCCCCccEEEEEeCccCCCC--CCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecC
Q 046405 329 QVYDWEKVGHHDKMGMNVIPLKDITPE--EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKG 393 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
.|+....-++...+|.+.++|++.... ......+++... ......|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 998875333336999999999999875 344555655331 255678999999888744
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.05 E-value=0.1 Score=46.04 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=89.0
Q ss_pred ceeEEEEEEEEecCCCcCCC--CCCCCcEEEE--EEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-----------
Q 046405 258 PVGILNVKVLRAMKLKKKDL--IGASDPYVKL--KLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE----------- 322 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v--~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----------- 322 (538)
..-.|.++|..++-....-. .+..+.-..+ .++++++ +|+.+..+.+|.++|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF---~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRF---RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceE---ecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 35578888888775432211 1344444444 4466665 8999999999999999999987432
Q ss_pred --CCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCc--eEEEeccccCCCCCCCCCccccEEEEEEEEEeec
Q 046405 323 --YQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPR--EMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFK 392 (538)
Q Consensus 323 --~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
.+.+++.|.-.|..+...++|.-.++.+.+...... ....+|.... ...+...|-|.++++..|..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence 457888888888777778999999999988766544 4555553321 11245789999999988863
No 256
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.87 E-value=0.046 Score=49.71 Aligned_cols=91 Identities=18% Similarity=0.391 Sum_probs=64.3
Q ss_pred eEEEEEEeeeccCCC-CCCCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEG-KYHTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~-~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~ 488 (538)
..++|+|+++.++.. ....+-||++.+ |++. ..|+.+.-..++.|||.++|.+. +.|.+..|.|.||+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 468899999999986 445666777644 5543 26655555678999999888664 66778899999998753
Q ss_pred CC-C-----------CCCCCCccEEEEEecch
Q 046405 489 RM-G-----------LLHPKETLGYIGINLAD 508 (538)
Q Consensus 489 ~~-g-----------~~~~d~~lG~~~i~L~~ 508 (538)
.. | .-+.+..||.++++|-+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEc
Confidence 10 0 01124689999999976
No 257
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.80 E-value=0.052 Score=49.39 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=60.9
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 333 (538)
..++|+|+.+.++... ....+-||.+.+ |++... ...|+....+.++.|||.+.|++. + |....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3689999999999862 234677888755 443321 224555444567999999999764 2 3467899999997
Q ss_pred CCCC----------------CCCccEEEEEeCccC
Q 046405 334 EKVG----------------HHDKMGMNVIPLKDI 352 (538)
Q Consensus 334 ~~~~----------------~d~~lG~~~i~l~~l 352 (538)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5422 135677777776653
No 258
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.76 E-value=0.052 Score=48.56 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=61.7
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCC-CceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKL-PSKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 333 (538)
..++|++....++...+ ....+-||.+.+ +++.. ....|.......++.|||...|++. + +....|.+.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35778888888776521 234567777765 43322 2223333333368999999999864 2 3367899999998
Q ss_pred CCCC--CCCccEEEEEeCccCC
Q 046405 334 EKVG--HHDKMGMNVIPLKDIT 353 (538)
Q Consensus 334 ~~~~--~d~~lG~~~i~l~~l~ 353 (538)
+..+ .+..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4678999999987753
No 259
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.41 E-value=0.028 Score=61.28 Aligned_cols=90 Identities=22% Similarity=0.379 Sum_probs=68.7
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC---C-CCceeeeecC-CCCCceeeeE-EEEE-EeCCCCCeEEEEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD---K-LPSKKTTVKH-RNLNPEWNEE-FGLV-VKDPEYQALELQVY 331 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~---~-~~~~~T~v~~-~t~nP~Wne~-f~f~-v~~~~~~~L~v~v~ 331 (538)
.+.+.|+|+++.=|..++ ...||.|.+-+- . ...++|++.. ++.||+|+|+ |.|. |--++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578999999999887665 358999998432 1 2345777766 6789999965 7775 33455678999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
+.+ ..++|+=.+|+..+..+-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999998873
No 260
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.98 E-value=0.091 Score=47.79 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=63.8
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCCc-eeeeecC----CCCCceeeeEEEEEEe---CCCCCeEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPS-KKTTVKH----RNLNPEWNEEFGLVVK---DPEYQALEL 328 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~---~~~~~~L~v 328 (538)
...+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|++. -+.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3468899999999987664456788998876 4433211 1333211 1235779999998874 233678999
Q ss_pred EEEecCCCC---------CCCccEEEEEeCccC
Q 046405 329 QVYDWEKVG---------HHDKMGMNVIPLKDI 352 (538)
Q Consensus 329 ~v~d~~~~~---------~d~~lG~~~i~l~~l 352 (538)
.+|+....+ .+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 356889998888764
No 261
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.95 E-value=0.47 Score=41.51 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=75.9
Q ss_pred eEEEEEEeeeccCCCCCCCCCeEEEEEcCee---EEeecc-cCCCCCcCcceEEEEecCC---C----CCCeEEEEEEEc
Q 046405 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEE---KKTKRI-KKNRDPRWEEEFQFTLEEP---P----TDDKLHVEVIST 486 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~---~kT~v~-~~t~nP~wne~f~f~v~~~---~----~~~~l~v~V~d~ 486 (538)
-.+.+.+++..+++. ....-||+..-++.. .+|... .....-.|||.|.+.+.-. . ....+.+.|+..
T Consensus 7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~ 85 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV 85 (143)
T ss_pred EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence 456788888888876 223334444444443 234332 3456678999999887621 0 122578888876
Q ss_pred cCCCCCCCCCCccEEEEEecchhccc--ceeceEEEcCCC--CCeEEEEEEEEEe
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNN--KRINEKYHLIDS--KNGRIQIELQWRA 537 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~~~--~~G~i~l~~~wkp 537 (538)
... ++...+|.+.|+|.+.... ......++|... .+..+++++++.+
T Consensus 86 ~~~----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 86 DGS----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred cCC----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 321 1236999999999999984 456788999876 3578888888765
No 262
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.94 E-value=0.24 Score=45.07 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=46.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCCceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEecC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPSKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDWE 334 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~~ 334 (538)
.++|+|.++..+ ..+......-||++.+ +++.....+|+...-+.++.|||...|++. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 577888888633 3222222335666544 433332335666666778999999888865 2 23678999999974
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.70 E-value=0.15 Score=45.50 Aligned_cols=90 Identities=19% Similarity=0.338 Sum_probs=61.2
Q ss_pred eEEEEEEeeeccCCC--CCCCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEe--cCCCCCCeEEEEEEEcc
Q 046405 418 GLLVVILHEAQDVEG--KYHTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTL--EEPPTDDKLHVEVISTS 487 (538)
Q Consensus 418 g~L~v~v~~a~~L~~--~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~ 487 (538)
..++|.++.+.++.. ....+-||++.+ |++. ..|.......++.|||-.+|.+ .+.|.+..|.+.+|+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 456777888877764 234556666644 4442 2444444447899999988875 45577889999999986
Q ss_pred CCCCCCCCCCccEEEEEecchh
Q 046405 488 SRMGLLHPKETLGYIGINLADV 509 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l 509 (538)
... -..+..||.++++|-+-
T Consensus 88 ~~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCC--CCcceEEEEEeEEeEcc
Confidence 420 01357999999999774
No 264
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.48 E-value=0.35 Score=38.23 Aligned_cols=84 Identities=25% Similarity=0.367 Sum_probs=59.3
Q ss_pred CCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceE
Q 046405 281 SDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360 (538)
Q Consensus 281 ~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++-.+++.+++... .+|.-+. ..+..|++.|.+.+.. +.+|+|.||=+|- ..+.|-..+.|++... ..
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEcCeEE--eeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 67888999986554 3665543 3478899999999965 5789999998763 4467777888887322 22
Q ss_pred EEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.++ -.+.|.+..+++|
T Consensus 77 ~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 77 QLD------------MEPQLCLVAELTF 92 (98)
T ss_pred eec------------cccccEEEEEEEe
Confidence 232 2457888888877
No 265
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.98 E-value=0.14 Score=49.54 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCceeEEEEEEEEecCCCcCCC--CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
....|+|.+++..+++|+-... .-.-+-||++..+.+. ..||.+......=.|.|+|+..+.+. ..+.+-||.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeecccc--eeeeEEEeec
Confidence 4457999999999999974422 2345899999987544 34777766666667999999988764 5788999998
Q ss_pred CCCCCCCccEEEEEeCccCCCC-CCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPE-EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+.-.++++.-.-.+.+..+... ..+..-+. -.++|++.+.+.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 8766666533333333333322 12222222 24567777776553
No 266
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.94 E-value=0.18 Score=45.16 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=52.9
Q ss_pred CCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEeC---CCCCeEEEEEEecCCCCCCCccEEEEEeCccC
Q 046405 279 GASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVKD---PEYQALELQVYDWEKVGHHDKMGMNVIPLKDI 352 (538)
Q Consensus 279 g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l 352 (538)
..+|-||.+.+ ++.... ...|+.+.-+..+.|||...|++.- +....|.|+|||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45688888876 333221 1255555556678899999998752 23678999999987666677999999998775
No 267
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.79 E-value=0.12 Score=56.67 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=67.8
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcC-------eeEEeeccc-CCCCCcCcc-eEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRG-------EEKKTKRIK-KNRDPRWEE-EFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
-++.+.|+|++|+=|..+ ....||+|.+-| +.++|+++. ++.||+|+| .|.|.-.-.|.-..|.|.|++.
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 457899999999988763 566999999854 335888776 579999996 5777654445667999999998
Q ss_pred cCCCCCCCCCCccEEEEEecchhcc
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
+ ..++|+-.+|+..+-.
T Consensus 780 g--------gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 780 G--------GKFIGQRILPVDGLNA 796 (1189)
T ss_pred C--------CceeeeeccchhcccC
Confidence 5 3799999999987754
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.53 E-value=0.27 Score=44.01 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=52.0
Q ss_pred CCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEec
Q 046405 435 HTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINL 506 (538)
Q Consensus 435 ~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L 506 (538)
.++-||++.+ +++. ..|+.+.-+..+.|||-.+|++. +.|.+..|.|.||+.... +....+|.++++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~----~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT----GKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC----CCceEEEEEEEee
Confidence 4667777755 4432 25655555677899998888875 556788999999998642 2467999999999
Q ss_pred chh
Q 046405 507 ADV 509 (538)
Q Consensus 507 ~~l 509 (538)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 774
No 269
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.81 E-value=0.79 Score=41.73 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=57.9
Q ss_pred eEEEEEEeeeccCCCCCC--CCCeEEEEE--cCee---EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEGKYH--TNPSARILF--RGEE---KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~--~dpyv~v~~--~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~ 488 (538)
..++|.|+++.++..... ..-||++.+ |+.. .+|+...-+.++.|||-.+|.+. +.|....|.|.||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 356777777764433222 334555533 4432 25665666788999998888775 55677899999998632
Q ss_pred C------CC------CCCCCCccEEEEEecchh
Q 046405 489 R------MG------LLHPKETLGYIGINLADV 509 (538)
Q Consensus 489 ~------~g------~~~~d~~lG~~~i~L~~l 509 (538)
. .| .-..+..||.+++.|-+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcC
Confidence 1 00 001256899999999763
No 270
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.66 E-value=0.5 Score=41.45 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=46.9
Q ss_pred cEEEEEE--cCCCCC--ceeeeecCCC-CCceeeeEEEEEEe---CCCCCeEEEEEEecCCCCCC----CccEEEEEeCc
Q 046405 283 PYVKLKL--TDDKLP--SKKTTVKHRN-LNPEWNEEFGLVVK---DPEYQALELQVYDWEKVGHH----DKMGMNVIPLK 350 (538)
Q Consensus 283 pyv~v~~--~~~~~~--~~~T~v~~~t-~nP~Wne~f~f~v~---~~~~~~L~v~v~d~~~~~~d----~~lG~~~i~l~ 350 (538)
-||.+.+ |++... ...|+....+ .++.|||...|++. -|....|.|.||+.+....+ ..||.+.++|-
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 3455544 444432 2255555555 79999999999875 23478899999998765554 68999999988
Q ss_pred cC
Q 046405 351 DI 352 (538)
Q Consensus 351 ~l 352 (538)
+-
T Consensus 84 d~ 85 (142)
T PF00792_consen 84 DY 85 (142)
T ss_dssp -T
T ss_pred CC
Confidence 76
No 271
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.02 E-value=1.8 Score=39.21 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=54.5
Q ss_pred CCCcEEEEEEcCCCCCceeeeecC--CCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCC
Q 046405 280 ASDPYVKLKLTDDKLPSKKTTVKH--RNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+..-|+++.++++.+ .+|+... ....-.+||.|.+.+... -+.|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 446799999987665 3555443 333456889999999775 5789999999986 6789999999998766544
No 272
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.69 E-value=1.9 Score=38.93 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=52.0
Q ss_pred CCCCeEEEEEcCeeE-Eeeccc--CCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhc
Q 046405 435 HTNPSARILFRGEEK-KTKRIK--KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVV 510 (538)
Q Consensus 435 ~~dpyv~v~~~~~~~-kT~v~~--~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~ 510 (538)
...-|+++.++++.. +|+... ....-.|||.|.+.+...| +.|.++||.... ..+..|+.+.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~~-----~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKSG-----LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEccC-----ccceEEEEEEeeCCCCc
Confidence 456799999998765 554433 2333458999999998865 789999999863 46899999999975543
No 273
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.59 E-value=2.5 Score=33.55 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccce
Q 046405 436 TNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKR 514 (538)
Q Consensus 436 ~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~ 514 (538)
.+-.+.+.+.++.. +|.- +...+..|++.|++.+.. ...|.|.|+=+|- ..+.|-.-+.|.+..+
T Consensus 9 ~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~LdR---sRELEI~VywrD~-------RslCav~~lrLEd~~~--- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLELER---SRELEIAVYWRDW-------RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred cceEEEEEEcCeEEeeccc-cccccccccceeEEEeec---ccEEEEEEEEecc-------hhhhhheeeEhhhhcc---
Confidence 46677888877654 5543 334788999999999975 3689999987763 2577778888888332
Q ss_pred eceEEEcCCCCCeEEEEEEEE
Q 046405 515 INEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 515 ~~~~~~L~~~~~G~i~l~~~w 535 (538)
....++. ++|.+..++.|
T Consensus 75 -~~~~~le--pqg~l~~ev~f 92 (98)
T cd08687 75 -EVQLDME--PQLCLVAELTF 92 (98)
T ss_pred -cceeccc--cccEEEEEEEe
Confidence 1223333 46777666654
No 274
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=90.86 E-value=1.4 Score=36.03 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=47.2
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEe---CCCCCeEEEEEEecC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVK---DPEYQALELQVYDWE 334 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~v~d~~ 334 (538)
+.+++..+.+.........++-||.+.+ +++... ...|+.+.-...+.|||...|++. -+....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777777655433233588888876 433321 224555544556899999988764 233678999999965
No 275
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.69 E-value=1.2 Score=40.39 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=62.4
Q ss_pred ceEEEEEEeeeccCCCC---CCCCCeEEEEE--cCeeE----Eeeccc----CCCCCcCcceEEEEec--CCCCCCeEEE
Q 046405 417 GGLLVVILHEAQDVEGK---YHTNPSARILF--RGEEK----KTKRIK----KNRDPRWEEEFQFTLE--EPPTDDKLHV 481 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~--~~~~~----kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~v 481 (538)
...+.|+|.++.+++.. ...+-|+++.+ |++.. .|+... -...+.|||-.+|.+. +.|.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 45788999999999863 24677888754 54432 444322 2346779998888775 5567789999
Q ss_pred EEEEccCCC-C----CCCCCCccEEEEEecchh
Q 046405 482 EVISTSSRM-G----LLHPKETLGYIGINLADV 509 (538)
Q Consensus 482 ~V~d~~~~~-g----~~~~d~~lG~~~i~L~~l 509 (538)
.+|+..... + .-..+..||.++++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999876420 0 000356899999999773
No 276
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=89.12 E-value=0.84 Score=44.36 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=72.2
Q ss_pred CCceEEEEEEeeeccCCCC----C-CCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 415 EGGGLLVVILHEAQDVEGK----Y-HTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~----~-~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
..+|+|.+.+..+++|.-. | ..+-||.+....+.. +|.+.....--.|.|.|+..+.+. +.+.+-|+.+..
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence 3589999999999998641 2 467799998855433 565555555556899999988764 678888888764
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEE
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
.+ -++=+..| -+.+..+. +..-++-+-|+-.++|++.+++-+
T Consensus 125 q~--RHKLC~~g--~l~~~~v~-rqspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR--RHKLCHLG--LLEAFVVD-RQSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred hh--hccccccc--hhhhhhhh-hcCCcceeeeecccCCCCceeccc
Confidence 20 01123355 23333332 223355566665667887776643
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.00 E-value=1 Score=39.43 Aligned_cols=56 Identities=21% Similarity=0.509 Sum_probs=40.5
Q ss_pred EeecccCC-CCCcCcceEEEEe--cCCCCCCeEEEEEEEccCCCCCCCCC----CccEEEEEecchh
Q 046405 450 KTKRIKKN-RDPRWEEEFQFTL--EEPPTDDKLHVEVISTSSRMGLLHPK----ETLGYIGINLADV 509 (538)
Q Consensus 450 kT~v~~~t-~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~~~~g~~~~d----~~lG~~~i~L~~l 509 (538)
.|+...-+ .++.|||.++|.+ .+.|.+..|.|.|+..+.. ..+ ..||.++++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence 56555555 7999999877775 5667888999999988753 222 6899999999775
No 278
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=88.81 E-value=3.7 Score=37.66 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=41.4
Q ss_pred CceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCCC--CCCccEEEEEeCcc
Q 046405 295 PSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKVG--HHDKMGMNVIPLKD 351 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~~--~d~~lG~~~i~l~~ 351 (538)
..++|.+...+.+|.|+|++.+.+... ...-|.|+.++...-. ....+|.+.+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 346888999999999999999988643 3567888887753221 12568888888843
No 279
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=86.64 E-value=3.9 Score=37.55 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=34.5
Q ss_pred ceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEecCCCC-C--CCccEEEEEeCcc
Q 046405 296 SKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYDWEKVG-H--HDKMGMNVIPLKD 351 (538)
Q Consensus 296 ~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~~~~~-~--d~~lG~~~i~l~~ 351 (538)
...|.+..++.+|.|+|+|.+.+.... ..-|.|++++...-. + +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888888899999999999886543 567899999865322 1 2689999999988
No 280
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=85.88 E-value=7.1 Score=36.00 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=41.5
Q ss_pred CceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCC-CC---CCccEEEEEeCc
Q 046405 295 PSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKV-GH---HDKMGMNVIPLK 350 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~-~~---d~~lG~~~i~l~ 350 (538)
..++|.+...+.+|.|+|++.+.+... ...-|.|++++.... .+ ....|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999988633 366788998875421 12 246888888885
No 281
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=83.13 E-value=8.5 Score=38.15 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=75.8
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCC--cCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDP--RWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP--~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
..-.|-|.|++..++... ..-|+.+..|....+|..+.-+..- .-++.....++. ....|.+.++-.. +
T Consensus 56 RkF~LLVeI~EI~~i~k~--khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-----L 126 (508)
T PTZ00447 56 RTFYLLVKINEIFNINKY--KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-----L 126 (508)
T ss_pred ceeeEEEEehhhhccccc--eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc-----c
Confidence 455677888888777653 5679999999888888665443322 234555555554 3567999998775 5
Q ss_pred CCCCccEEEEEecch-hcccc-eeceEEEcCCCC--CeEEEEEE
Q 046405 494 HPKETLGYIGINLAD-VVNNK-RINEKYHLIDSK--NGRIQIEL 533 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~-l~~~~-~~~~~~~L~~~~--~G~i~l~~ 533 (538)
.+..-||.+.+.++. ++++. ..++||-+...+ .++|.|++
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 678899999999975 44444 358999997654 47777765
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.27 E-value=7.6 Score=31.65 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=44.0
Q ss_pred EEEEEeeeccCCCC--C-CCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEcc
Q 046405 420 LVVILHEAQDVEGK--Y-HTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTS 487 (538)
Q Consensus 420 L~v~v~~a~~L~~~--~-~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~ 487 (538)
+.+.+..+++.... . ..+-||++.+ |++. ..|+.+.-...+.|||-.+|.+. +.|.+..|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 44555666555432 1 2366777754 4443 25555545666899998888765 5567789999999864
No 283
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=80.24 E-value=2.1 Score=47.70 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=75.5
Q ss_pred CCCCeEEEEEcCeeE-EeecccCC-CCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc
Q 046405 435 HTNPSARILFRGEEK-KTKRIKKN-RDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 435 ~~dpyv~v~~~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~ 512 (538)
..++|+.+.+..... +|....+. .+|.|.+.|+..+... ...+++.|-+.+- .+.-..+|.+.++...+..+
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~----~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV----PGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc----ccceeEEEEeccchhhhhcc
Confidence 478999999977654 88877776 9999999998888763 4678888877763 34478999999999999998
Q ss_pred ceeceEEEcCCCC------CeEEEEEEEEEe
Q 046405 513 KRINEKYHLIDSK------NGRIQIELQWRA 537 (538)
Q Consensus 513 ~~~~~~~~L~~~~------~G~i~l~~~wkp 537 (538)
..+..|+++.+.. ...+.++++++|
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeEe
Confidence 8889999987542 345556677765
No 284
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=78.43 E-value=5.5 Score=44.60 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=78.0
Q ss_pred CCcEEEEEEcCCCCCceeeeecCCC-CCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCce
Q 046405 281 SDPYVKLKLTDDKLPSKKTTVKHRN-LNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE 359 (538)
Q Consensus 281 ~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 359 (538)
.++|+.+.+..... .+|....+. .+|.|.+.|....... ...+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 48999999876554 366666666 6899999998887665 4678899988887776889999999999999987777
Q ss_pred EEEeccccCCCCCCCCCccccEEEEEEEEEeecCC
Q 046405 360 MTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD 394 (538)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
.+++++..- . ......-.+.+.+.|.+....
T Consensus 215 ~~~~Il~~d-~---~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDND-G---KPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccC-C---ccccCCcccceEEeeEeechh
Confidence 777764321 1 112223356677888877653
No 285
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=77.83 E-value=34 Score=31.37 Aligned_cols=56 Identities=25% Similarity=0.336 Sum_probs=40.1
Q ss_pred ceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCC--C-------CCCccEEEEEeCcc
Q 046405 296 SKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKV--G-------HHDKMGMNVIPLKD 351 (538)
Q Consensus 296 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~--~-------~d~~lG~~~i~l~~ 351 (538)
...|.+..++.+|.|+|++.+.+.-. ...-|.|+.|+.+-. . ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788888899999999999887533 356788999986411 1 12457777777765
No 286
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.26 E-value=11 Score=31.30 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=50.2
Q ss_pred eEEEEEcC-eeEEeecccCCCCCcCcceEEEEecCCC------CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc
Q 046405 439 SARILFRG-EEKKTKRIKKNRDPRWEEEFQFTLEEPP------TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 439 yv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~------~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
||.+.+-. +.+.|.++. ..+|.+|-+-.|.|.... ....+.++++..-. ..-..+|.+++++..+++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-----~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-----SDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-----S-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-----CCeEEEEEEEeechhhhc
Confidence 44444433 445666665 899999999899887531 13478999987642 235789999999999996
Q ss_pred cc--eeceEEEcCCCC---CeEEEEEEEEEe
Q 046405 512 NK--RINEKYHLIDSK---NGRIQIELQWRA 537 (538)
Q Consensus 512 ~~--~~~~~~~L~~~~---~G~i~l~~~wkp 537 (538)
+. ++...-.|.+.. -|.++..++.+.
T Consensus 76 ~~~~~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 76 SNGERIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp --S--EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred CCCceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 43 466777776543 488888777654
No 287
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=72.80 E-value=1.2 Score=48.64 Aligned_cols=91 Identities=19% Similarity=0.380 Sum_probs=72.0
Q ss_pred CchHHHHHHHHHHChhHHHH--HHHHHHHHHHHHHHh-cCCCceeeeEEEeEEeCCCCCCeEeeeEEEecC-CCeEEEEe
Q 046405 69 DRVDWLNKFIETMWPFLDKA--ICKTVRETVKPIIAE-QIPQYKIDSVEFEALTLGSLPPTFQGMKVYVTD-DKELIMEP 144 (538)
Q Consensus 69 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~p~i~~v~~~~~~-~~~~~ld~ 144 (538)
|.+-|||.++.++.--+.+. ..+.+++.++.++.. +.|++ +..+-..+...|+.||.|++.++.... .+...++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 45789999999988644432 556667777777666 67888 999999999999999999999998753 45567888
Q ss_pred eeEEeCCCceEEEEEE
Q 046405 145 LLKWAGNPNILIAAKA 160 (538)
Q Consensus 145 ~~~~~~~~~i~l~~~~ 160 (538)
|+.|.||..+.+..++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999999877766654
No 288
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=72.67 E-value=16 Score=33.49 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=34.7
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecch
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLAD 508 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~ 508 (538)
...|.+.+++.+|.|+|.|.+.+.... ....|.+++++...+.+ -.++..+|.+-++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-S-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-cCccceeEEEEEEeee
Confidence 358889999999999999999987542 24578889988754311 0112699999999987
No 289
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=66.11 E-value=16 Score=33.31 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=38.8
Q ss_pred eeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCC-----CCCCccEEEEEeCcc
Q 046405 297 KKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKV-----GHHDKMGMNVIPLKD 351 (538)
Q Consensus 297 ~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~-----~~d~~lG~~~i~l~~ 351 (538)
++|.+..+ .+|.|+|++.+.+... ...-|.|++++...- .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999988543 266799999986522 235678998888876
No 290
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=64.71 E-value=21 Score=29.51 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=43.7
Q ss_pred ceeeeecCCCCCceeeeEEEEEEeCC-------CCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCC--ceEEEeccc
Q 046405 296 SKKTTVKHRNLNPEWNEEFGLVVKDP-------EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEP--REMTLDLLK 366 (538)
Q Consensus 296 ~~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~l~~ 366 (538)
...|.+.. +.+|.+|-+-.|.|... .+..+.++++..- ....+.+|.+.+++..+.+... ......+..
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g 89 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVG 89 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-B
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEec
Confidence 34677765 77999998888887633 2567999999875 3346789999999999985543 223333321
Q ss_pred cCCCCCCCCCccccEEEEEEEE
Q 046405 367 NMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 367 ~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
. ++..-|.|...+..
T Consensus 90 ---~----~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 90 ---V----SGEDFGTLEYWIRL 104 (107)
T ss_dssp ---S----SS-TSEEEEEEEEE
T ss_pred ---c----CCCeEEEEEEEEEe
Confidence 1 23477888877654
No 291
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=62.96 E-value=14 Score=41.42 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=57.1
Q ss_pred ccccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC--CCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEE
Q 046405 252 AKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD--DKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQ 329 (538)
Q Consensus 252 ~~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~ 329 (538)
........|-+.+.+++|..+... ..-||...+.. ....+.+|.++.+|..|.||++++..+.. .+.+++.
T Consensus 751 D~eSpl~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~ 823 (1112)
T KOG4269|consen 751 DDESPLLYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLE 823 (1112)
T ss_pred cccCcccccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchh
Confidence 335667789999999999988753 36788877642 22345689999999999999999988754 4666677
Q ss_pred EEecC
Q 046405 330 VYDWE 334 (538)
Q Consensus 330 v~d~~ 334 (538)
.++.+
T Consensus 824 ~~ek~ 828 (1112)
T KOG4269|consen 824 KTEKS 828 (1112)
T ss_pred hhccc
Confidence 77655
No 292
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=62.46 E-value=3.6 Score=32.50 Aligned_cols=44 Identities=27% Similarity=0.537 Sum_probs=36.7
Q ss_pred cCHHHHHHhcCCCCCCccCCCCCchHHHHHHHHHHChhHHHHHH
Q 046405 47 QDSKTVELLLPEIPLWVKNPDYDRVDWLNKFIETMWPFLDKAIC 90 (538)
Q Consensus 47 ~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 90 (538)
.|.+-++--|++||+|+--.|...-.-.|.+...+|.+.+.+++
T Consensus 27 ~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~ 70 (108)
T KOG4092|consen 27 KDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYIN 70 (108)
T ss_pred ccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheec
Confidence 44444555678999999999998889999999999998888877
No 293
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=61.59 E-value=1.8 Score=46.19 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=40.9
Q ss_pred eeEEEEEEEEecCCCcC--C--CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC
Q 046405 259 VGILNVKVLRAMKLKKK--D--LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~--d--~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~ 321 (538)
.|....+++.|.+++.- + ..-+.++++..+++.+.+ +|+...++.+|.|||. .+.+.+.
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~f---rt~~~~~~e~piyNe~-~~E~~~F 341 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTF---RTEISDDTEKPIYNED-EREDSDF 341 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhh---hhhhhccccccccccc-ccccccc
Confidence 45555566666666421 1 113458999999987776 8999999999999997 5555444
No 294
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=60.42 E-value=23 Score=32.35 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=39.8
Q ss_pred ceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCCCC------CCccEEEEEeCcc
Q 046405 296 SKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKVGH------HDKMGMNVIPLKD 351 (538)
Q Consensus 296 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~~~------d~~lG~~~i~l~~ 351 (538)
...|.|...+.+|.|+|++.+.+... ...-|.|+.++.+--.+ ...+|-+.+||-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45788888999999999999988643 35678899988542111 2457777777654
No 295
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=58.31 E-value=31 Score=31.69 Aligned_cols=59 Identities=20% Similarity=0.345 Sum_probs=41.5
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecch
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLAD 508 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~ 508 (538)
.++|.+.+++.+|.|+|.+.+.+.... ....|.++++...... -.....+|-.-++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~--k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD--KGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc--CCCCCceEEEEEeecc
Confidence 358999999999999999999987531 2447888887654320 0112578988888853
No 296
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=56.55 E-value=38 Score=31.33 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=41.6
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecc
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLA 507 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~ 507 (538)
..+|.+.++..+|.|+|.+...+.... ....|.+++.....+...=.....+|-.-++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 458999999999999999999887431 245788888765432000011257888888885
No 297
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=52.10 E-value=44 Score=37.62 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=60.4
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEE----cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEc
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILF----RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVIST 486 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~----~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~ 486 (538)
...++|.++++.++......|-+|.|.. |++. +.|..+....+|.||+..+|.+. +.|....|.+.|+.-
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 3567888888876654334556666654 3332 45666667899999998777664 556667788888765
Q ss_pred cC------------CCCCCCCCCccEEEEEecchhc
Q 046405 487 SS------------RMGLLHPKETLGYIGINLADVV 510 (538)
Q Consensus 487 ~~------------~~g~~~~d~~lG~~~i~L~~l~ 510 (538)
.. ..+.-+.+..+|.+++.|-|-.
T Consensus 422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~k 457 (1076)
T KOG0904|consen 422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHK 457 (1076)
T ss_pred echhccccccchhhhhccccccCceEEEeeeeeech
Confidence 20 0111234567999998886643
No 298
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.71 E-value=4.3 Score=44.11 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=47.3
Q ss_pred CCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCC
Q 046405 280 ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDIT 353 (538)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~ 353 (538)
..+||+.+.+.-... ..+.+...+..|.|+|+|...+.. ...+.+.|+.......+.+...+.+-.+++.
T Consensus 27 al~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 358998888753222 244557789999999999999765 4678899998765555555555544444444
No 299
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=46.89 E-value=59 Score=29.55 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.6
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCC-CCCCCCccEEEEEecch
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMG-LLHPKETLGYIGINLAD 508 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g-~~~~d~~lG~~~i~L~~ 508 (538)
|.++....+|.|+|.|...++... ....|.+++++...... .-.....+|.+-+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444499999999999996532 24578899987653210 01235689999999976
No 300
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=45.43 E-value=94 Score=35.20 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=45.6
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE----cCCCCCc-eeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEE
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL----TDDKLPS-KKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVY 331 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~----~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~ 331 (538)
..++|+++++.+... ....|-+|.|.. |++...+ ..|+-...+.+|.||+..+|.+. + |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 467888888876532 233466666655 4443322 34555555889999999888775 3 33567888888
Q ss_pred ec
Q 046405 332 DW 333 (538)
Q Consensus 332 d~ 333 (538)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 74
No 301
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=45.26 E-value=86 Score=28.60 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=42.7
Q ss_pred eeEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCC--CCCCCccEEEEEecch
Q 046405 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGL--LHPKETLGYIGINLAD 508 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~--~~~d~~lG~~~i~L~~ 508 (538)
....|.+..++.+|.|+|.+...++-.. ....|.+++++.....+. -.....+|..-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 3458889999999999999999887532 235788888875432110 0113568988888854
No 302
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=43.96 E-value=14 Score=30.23 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=31.7
Q ss_pred hcCCCCCCccCCCCCchHHHHHHHHHHChhHHHHHH
Q 046405 55 LLPEIPLWVKNPDYDRVDWLNKFIETMWPFLDKAIC 90 (538)
Q Consensus 55 ~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 90 (538)
-|++||+|+.-.|..-...++.+-.-+|.+.+.++.
T Consensus 35 KLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 35 KLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred ecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 467999999999999999999999999988887765
No 303
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=42.86 E-value=2e+02 Score=25.80 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=51.1
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEc---------C-e-eEEeecccC-----CCCCcCcceEEEEecCC--CCCCeEEE
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFR---------G-E-EKKTKRIKK-----NRDPRWEEEFQFTLEEP--PTDDKLHV 481 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~---------~-~-~~kT~v~~~-----t~nP~wne~f~f~v~~~--~~~~~l~v 481 (538)
+.-.|.+|.+... .+-||+-.+. + . .-.|...+. ...-.||..|++..... ..-..|.+
T Consensus 4 v~G~I~~a~~f~~---~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 4 VIGEIESAEGFEE---DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEEEEECCCC---CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 3445677876654 4668887762 2 2 345655543 33456998888877642 11248999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEec
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINL 506 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L 506 (538)
+|+..|. .+++.+.|...+.|
T Consensus 81 ~V~~~D~----~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDS----WGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcc----cCCeEEeEEeEEEe
Confidence 9999875 57888887755544
No 304
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=37.88 E-value=3.6e+02 Score=28.33 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=48.2
Q ss_pred CCCCCCeEeeeEEEecCCCeEEEEeeeEEeCCCceEEEEEEcceeEEEEEEEEEEEEEEEEEeecCCCCCCeeeEEEEEc
Q 046405 120 LGSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSL 199 (538)
Q Consensus 120 lG~~~p~i~~v~~~~~~~~~~~ld~~~~~~~~~~i~l~~~~~~~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf 199 (538)
.|..--+|.++++|. +++.+++.+++.-+ +.|++.+.=+|..+ |--..+.+
T Consensus 280 ~~~~~v~v~~v~v~g-~~~rl~i~~~~~g~------------------------~~G~i~l~G~P~yD--~~~~~l~l-- 330 (427)
T PF14356_consen 280 SGGKKVTVKSVSVYG-SGDRLVIALDVTGS------------------------LNGTIYLSGRPVYD--PATQTLRL-- 330 (427)
T ss_pred CCCceEEEEEEEEEe-cCCcEEEEEEEEEE------------------------EEEEEEEEEEEEEC--CCCCEEEE--
Confidence 666677788888886 55555544433222 45555555454433 11122222
Q ss_pred CCCCeEEEEEeEecccccccccHHHHHHHHHHHHHhhhccCCC
Q 046405 200 MEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLWPK 242 (538)
Q Consensus 200 ~~~P~id~~~~~~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~ 242 (538)
-++||++..-+ . -+-...-+.+..|.+.+++.++.|-
T Consensus 331 ---~dld~~~~t~~--~-l~~~a~wl~~~~i~~~i~~~~~~~l 367 (427)
T PF14356_consen 331 ---EDLDFDLDTKN--F-LLKTAAWLLHGRIRKAIEEKLVFDL 367 (427)
T ss_pred ---EeeEEEecccc--h-HHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 36777776542 1 1223345667777888887776663
No 305
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=37.26 E-value=30 Score=38.85 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=62.4
Q ss_pred CCCceEEEEEEeeeccCCCCCCCCCeEEEEEc-----CeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 414 PEGGGLLVVILHEAQDVEGKYHTNPSARILFR-----GEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 414 ~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
+...|-+.+.+++|..+.. ..+-||...+. ..+-+|+++.+|..|.||+.++..+-.. +...++.++++.
T Consensus 755 pl~ygflh~~vhsat~lkq--s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s---qS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLKQ--SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES---QSSRLEKTEKST 829 (1112)
T ss_pred cccccceeeeecccccccc--ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc---cccchhhhcccc
Confidence 4567889999999988864 35678877763 2345999999999999999999888643 556666666643
Q ss_pred CCCC------CCCCCccEEEEEecchhc
Q 046405 489 RMGL------LHPKETLGYIGINLADVV 510 (538)
Q Consensus 489 ~~g~------~~~d~~lG~~~i~L~~l~ 510 (538)
..-. ...+...|+..+.+.--.
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~~~ 857 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDPQP 857 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCccc
Confidence 2100 234556666666555433
No 306
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.86 E-value=2.3e+02 Score=25.09 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=44.0
Q ss_pred CCCCcEEEEEE--cCCCC--------CceeeeecCCCCCc-eeeeEEEEEEeCCC---CCeEEEEEEecCCCCCCCccEE
Q 046405 279 GASDPYVKLKL--TDDKL--------PSKKTTVKHRNLNP-EWNEEFGLVVKDPE---YQALELQVYDWEKVGHHDKMGM 344 (538)
Q Consensus 279 g~~dpyv~v~~--~~~~~--------~~~~T~v~~~t~nP-~Wne~f~f~v~~~~---~~~L~v~v~d~~~~~~d~~lG~ 344 (538)
-.+|-||+.+. +++.. ....+.-.++-.|| +||--++....... =..|.+.||-.|..++|-..|-
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GY 103 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGY 103 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeee
Confidence 45688888876 22221 01112222344444 67866655554321 2468999999999999999988
Q ss_pred EEEeCc
Q 046405 345 NVIPLK 350 (538)
Q Consensus 345 ~~i~l~ 350 (538)
..+.+-
T Consensus 104 g~~hiP 109 (187)
T KOG4027|consen 104 GMLHIP 109 (187)
T ss_pred eeEecC
Confidence 777654
No 307
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=34.06 E-value=1.5e+02 Score=27.29 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=42.7
Q ss_pred eeEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCC-----CCCCCCccEEEEEecch
Q 046405 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMG-----LLHPKETLGYIGINLAD 508 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g-----~~~~d~~lG~~~i~L~~ 508 (538)
....|.|..++.+|.|.|.+...+.-.. ....|.+++++.....+ .-.....+|..-+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3558899999999999999888887431 23478888887642100 00123568999999875
No 308
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.90 E-value=20 Score=39.17 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=39.4
Q ss_pred CCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEcc
Q 046405 435 HTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 435 ~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
..+||+.+.+.-+.. ++.+.+.+..|.|++.|...+.. ...+.|.|+.+.
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~---~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA---GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec---CCceEEEEEecC
Confidence 468999999866554 56667889999999999999765 356888888763
No 309
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=32.72 E-value=3.5e+02 Score=27.30 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=70.1
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCc--eeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNP--EWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP--~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
.=.|-|.|.+-.++... ..-|+.++.|...+ +|..+.-+..- .-.+.....+.. ...+|++.+|-.. +
T Consensus 57 kF~LLVeI~EI~~i~k~-----khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKk-L 126 (508)
T PTZ00447 57 TFYLLVKINEIFNINKY-----KHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTK-L 126 (508)
T ss_pred eeeEEEEehhhhccccc-----eeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeeeee-cCceEEEEEEecc-c
Confidence 34677777777665432 36889998876554 44333222221 233444444533 3678999999886 5
Q ss_pred CCCCccEEEEEeCcc-CCC-CCCceEEEeccccCCCCCCCCCccccEEEEEEE
Q 046405 337 GHHDKMGMNVIPLKD-ITP-EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVL 387 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~-l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
.+...||.+.+.+.. +.. .-++..|+-+.+ ++...+.|.+++.
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEeh
Confidence 578899999999874 333 336677887643 3677788887763
No 310
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=32.36 E-value=1.6e+02 Score=25.11 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=50.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCcee-eeEEEEEEe--CCCCCeEEEEEEecCC-C
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEW-NEEFGLVVK--DPEYQALELQVYDWEK-V 336 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~--~~~~~~L~v~v~d~~~-~ 336 (538)
.|.++-+.-.++|.-+..+...||++++-++... ..|...... .... ...+.+.+. -+-...+.|++|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v--~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKV--FSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEE--EETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccE--EEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 4555555556677665567789999999765442 111111111 1111 122333322 1224678999999873 4
Q ss_pred CCCCccEEEEEeCccCC
Q 046405 337 GHHDKMGMNVIPLKDIT 353 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~ 353 (538)
..++.+.++.+.-.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 56777888888777666
No 311
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.72 E-value=30 Score=22.99 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=6.1
Q ss_pred HHhheeeeeEec
Q 046405 21 LVGGYFLFIYHQ 32 (538)
Q Consensus 21 ~~~~~~~~~~~~ 32 (538)
++++++++.||+
T Consensus 26 ~vl~~~l~~~~r 37 (40)
T PF08693_consen 26 IVLGAFLFFWYR 37 (40)
T ss_pred HHHHHHhheEEe
Confidence 344455555555
No 312
>PF15102 TMEM154: TMEM154 protein family
Probab=27.80 E-value=66 Score=28.08 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=5.8
Q ss_pred eeEeccCCCCCc
Q 046405 28 FIYHQPTDIKDP 39 (538)
Q Consensus 28 ~~~~~~~~~~~~ 39 (538)
.+|++++|.|+.
T Consensus 79 v~~~kRkr~K~~ 90 (146)
T PF15102_consen 79 VIYYKRKRTKQE 90 (146)
T ss_pred eeEEeecccCCC
Confidence 344454555554
No 313
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=27.32 E-value=7.3e+02 Score=25.89 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=36.5
Q ss_pred CeEEEEEEecCC-----C-CCCCccEEEEEeCccCCCC-CC---ceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 324 QALELQVYDWEK-----V-GHHDKMGMNVIPLKDITPE-EP---REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 324 ~~L~v~v~d~~~-----~-~~d~~lG~~~i~l~~l~~~-~~---~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
..|+|.||.-.. + ....+||++.++|.--... .. +.-|..+-+.. ....+....+||+.+.-.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~---~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNK---QGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCC---CCCCCCCcceEEEEEeccC
Confidence 579999998543 2 4567999999999833222 21 22344432211 0111224568888886554
No 314
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=25.54 E-value=4.9e+02 Score=23.26 Aligned_cols=95 Identities=21% Similarity=0.324 Sum_probs=57.8
Q ss_pred EEEEEecCCCcCCCCCCCCcEEEEEEc--CCC-----CC-ceeeeecCC-----CCCceeeeEEEEEEeCC--C-CCeEE
Q 046405 264 VKVLRAMKLKKKDLIGASDPYVKLKLT--DDK-----LP-SKKTTVKHR-----NLNPEWNEEFGLVVKDP--E-YQALE 327 (538)
Q Consensus 264 V~v~~A~~L~~~d~~g~~dpyv~v~~~--~~~-----~~-~~~T~v~~~-----t~nP~Wne~f~f~v~~~--~-~~~L~ 327 (538)
=.|.+|.+.. ..+-||+..+. ++. .. ...|.+... +..-.||.-|++..... . -..|.
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 3567777543 34678888773 211 11 234444432 33467998777766533 2 26899
Q ss_pred EEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 328 LQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 328 v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++||..|..+++...|-..+.+-.- .+ .++...+.++
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP~~-pG-~h~~~v~~wr 116 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLPTQ-PG-RHEVEVPTWR 116 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeCCC-Cc-eEEEEEEEEe
Confidence 9999999999999987766655332 33 3444555444
No 315
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.91 E-value=19 Score=38.82 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=50.9
Q ss_pred CceEEEEEEeeeccCCC------C-CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEcc
Q 046405 416 GGGLLVVILHEAQDVEG------K-YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~------~-~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
-.|+...+++.|.+++. + -..++++...++.+..+|+...++.+|+|||. +|...+-..+..+...|.+++
T Consensus 278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc
Confidence 45666667777777753 1 25789999999999999999999999999997 666665433334444444443
No 316
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=22.16 E-value=1.3e+02 Score=31.22 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=30.6
Q ss_pred ccEEEEEeCcc-CCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 341 KMGMNVIPLKD-ITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 341 ~lG~~~i~l~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
.+|.+.+++.. +..+..++.|+++....+. ....|.+ +++.|..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~-----~~~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNK-----SVGEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCC-----CcCcceE-EEEEeee
Confidence 47999999999 6666788999987543221 3445677 6776643
No 317
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=20.55 E-value=4.6e+02 Score=22.12 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=46.6
Q ss_pred EEEEeeeccCCCCCCCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEec-CCCCCCeEEEEEEEccCCCCCCCCCCc
Q 046405 421 VVILHEAQDVEGKYHTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLE-EPPTDDKLHVEVISTSSRMGLLHPKET 498 (538)
Q Consensus 421 ~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~-~~~~~~~l~v~V~d~~~~~g~~~~d~~ 498 (538)
.|.+...-++...+...||++|+-++... .|........-.=...+.+.+. +.+....+.|++++.+.. ...++.
T Consensus 10 ~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~---~~~~~~ 86 (134)
T PF10409_consen 10 SIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSS---SMSKEK 86 (134)
T ss_dssp EEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETT---ECCCEE
T ss_pred EEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCc---ccccCe
Confidence 34444444443345679999999888776 3333222111111122333333 112346789999988632 235567
Q ss_pred cEEEEEecchhc
Q 046405 499 LGYIGINLADVV 510 (538)
Q Consensus 499 lG~~~i~L~~l~ 510 (538)
+.++.+.=.-+.
T Consensus 87 ~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 87 MFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEGGGSB
T ss_pred EEEEEEeeeeee
Confidence 777777755554
No 318
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=20.33 E-value=3.4e+02 Score=23.61 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEE-----------EecCCCCCCeEEEEEEEccC
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQF-----------TLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f-----------~v~~~~~~~~l~v~V~d~~~ 488 (538)
|.++-..|-+.--..+.|-|..|++-|+.++|+-....--=.|+|.|.| .+.+.-..+.+.++++....
T Consensus 4 L~i~aVTCPGv~L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~ 83 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVP 83 (140)
T ss_pred EEEEEEecCCeEeCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeC
Q ss_pred CCCCCCCCCccEEEEEecchhc
Q 046405 489 RMGLLHPKETLGYIGINLADVV 510 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~ 510 (538)
.....|++..-+++|.+
T Consensus 84 -----~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 84 -----PAGEILAYYEENTRDFL 100 (140)
T ss_pred -----CCCcEEEEEeccccceE
Done!