Query 046408
Match_columns 102
No_of_seqs 168 out of 1043
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 11:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2764 PhnB Uncharacterized p 100.0 4.7E-31 1E-35 177.4 11.8 95 1-97 2-135 (136)
2 PRK10148 hypothetical protein; 100.0 1E-28 2.2E-33 167.8 12.2 96 1-97 3-145 (147)
3 PF06983 3-dmu-9_3-mt: 3-demet 99.9 6.1E-25 1.3E-29 144.1 11.9 87 1-91 3-116 (116)
4 cd06588 PhnB_like Escherichia 99.9 3.3E-24 7.1E-29 141.1 11.7 90 1-91 1-128 (128)
5 cd08355 Glo_EDI_BRP_like_14 Th 99.7 2.9E-16 6.3E-21 101.1 12.2 83 1-92 1-121 (122)
6 COG3865 Uncharacterized protei 99.7 4.1E-16 8.9E-21 105.2 11.0 91 1-93 6-124 (151)
7 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1.7E-14 3.8E-19 91.8 12.1 84 1-93 3-122 (122)
8 cd07264 Glo_EDI_BRP_like_15 Th 99.3 1.3E-10 2.7E-15 74.4 11.0 87 3-93 4-125 (125)
9 cd09011 Glo_EDI_BRP_like_23 Th 99.3 9.3E-11 2E-15 75.2 10.0 87 2-93 5-119 (120)
10 cd08359 Glo_EDI_BRP_like_22 Th 99.2 5.7E-10 1.2E-14 71.0 10.9 89 1-92 3-119 (119)
11 cd08356 Glo_EDI_BRP_like_17 Th 99.2 4E-10 8.6E-15 72.3 9.3 87 1-92 3-113 (113)
12 cd08350 BLMT_like BLMT, a bleo 99.2 7.9E-10 1.7E-14 71.0 10.5 87 1-93 4-119 (120)
13 cd08349 BLMA_like Bleomycin bi 99.1 4.7E-09 1E-13 65.6 10.3 87 2-92 1-112 (112)
14 cd07235 MRD Mitomycin C resist 99.0 2.5E-09 5.5E-14 68.4 8.9 84 4-92 5-122 (122)
15 PF12681 Glyoxalase_2: Glyoxal 99.0 3.7E-09 7.9E-14 65.9 9.2 84 5-91 1-108 (108)
16 cd07238 Glo_EDI_BRP_like_5 Thi 99.0 6.2E-09 1.4E-13 65.7 10.3 86 1-93 2-111 (112)
17 cd08342 HPPD_N_like N-terminal 99.0 1.4E-08 3.1E-13 66.8 10.9 90 4-96 5-126 (136)
18 cd07247 SgaA_N_like N-terminal 98.8 1.2E-07 2.6E-12 59.7 10.2 86 3-92 4-114 (114)
19 PRK10291 glyoxalase I; Provisi 98.7 4.3E-07 9.3E-12 58.9 11.0 89 5-97 2-124 (129)
20 cd08352 Glo_EDI_BRP_like_1 Thi 98.7 6.9E-07 1.5E-11 56.3 10.8 84 4-91 8-124 (125)
21 PRK11478 putative lyase; Provi 98.6 6.2E-07 1.3E-11 57.6 9.9 84 5-92 12-128 (129)
22 PF00903 Glyoxalase: Glyoxalas 98.6 1.3E-06 2.7E-11 55.1 11.1 24 5-30 7-30 (128)
23 cd07261 Glo_EDI_BRP_like_11 Th 98.6 4.8E-07 1E-11 57.1 8.9 84 4-92 3-114 (114)
24 cd08354 Glo_EDI_BRP_like_13 Th 98.6 1.2E-06 2.7E-11 55.3 9.5 85 2-93 3-122 (122)
25 TIGR03081 metmalonyl_epim meth 98.6 8.8E-07 1.9E-11 56.5 8.8 85 4-91 6-127 (128)
26 cd08353 Glo_EDI_BRP_like_7 Thi 98.5 1.7E-06 3.6E-11 56.7 9.6 37 57-93 89-141 (142)
27 cd07263 Glo_EDI_BRP_like_16 Th 98.5 3.9E-06 8.5E-11 52.3 10.6 85 5-92 4-119 (119)
28 cd08357 Glo_EDI_BRP_like_18 Th 98.5 2.5E-06 5.3E-11 54.2 9.7 84 5-92 5-124 (125)
29 cd07251 Glo_EDI_BRP_like_10 Th 98.5 2.6E-06 5.7E-11 53.6 9.1 83 4-92 3-120 (121)
30 cd07267 THT_Oxygenase_N N-term 98.5 5E-06 1.1E-10 52.8 10.3 83 5-93 9-110 (113)
31 cd08362 BphC5-RrK37_N_like N-t 98.4 4.5E-06 9.7E-11 52.8 9.8 86 4-95 8-119 (120)
32 cd08351 ChaP_like ChaP, an enz 98.4 4.7E-06 1E-10 53.5 9.6 83 3-93 8-121 (123)
33 cd09012 Glo_EDI_BRP_like_24 Th 98.4 5.7E-06 1.2E-10 53.1 9.9 84 2-92 3-123 (124)
34 cd07233 Glyoxalase_I Glyoxalas 98.4 8.5E-06 1.8E-10 51.4 10.5 83 4-90 5-120 (121)
35 TIGR00068 glyox_I lactoylgluta 98.4 9.4E-06 2E-10 54.1 11.1 88 3-94 21-142 (150)
36 cd08345 Fosfomycin_RP Fosfomyc 98.4 4E-06 8.6E-11 52.5 8.7 85 4-93 3-111 (113)
37 TIGR03645 glyox_marine lactoyl 98.4 8.6E-06 1.9E-10 55.4 10.9 40 57-96 95-154 (162)
38 cd08343 ED_TypeI_classII_C C-t 98.4 1.3E-05 2.9E-10 52.0 11.3 88 4-97 4-121 (131)
39 cd07241 Glo_EDI_BRP_like_3 Thi 98.3 1.4E-05 3E-10 50.5 10.0 24 4-29 6-29 (125)
40 cd06587 Glo_EDI_BRP_like This 98.3 2.1E-05 4.5E-10 47.6 10.4 81 5-90 4-112 (112)
41 cd08344 MhqB_like_N N-terminal 98.3 1.8E-05 3.9E-10 50.0 10.1 84 5-94 8-110 (112)
42 PRK04101 fosfomycin resistance 98.3 9.1E-06 2E-10 53.5 9.0 86 4-94 9-120 (139)
43 PLN03042 Lactoylglutathione ly 98.3 1.9E-05 4E-10 55.6 10.6 38 57-94 123-175 (185)
44 cd07240 ED_TypeI_classII_N N-t 98.3 5.2E-05 1.1E-09 47.4 11.4 84 4-93 7-114 (117)
45 cd07239 BphC5-RK37_C_like C-te 98.2 2.4E-05 5.3E-10 52.2 10.2 87 5-96 10-120 (144)
46 cd07245 Glo_EDI_BRP_like_9 Thi 98.2 1.1E-05 2.5E-10 49.4 8.0 83 5-90 6-114 (114)
47 cd08363 FosB FosB, a fosfomyci 98.2 1.2E-05 2.7E-10 52.6 8.5 87 4-94 5-116 (131)
48 cd07253 Glo_EDI_BRP_like_2 Thi 98.2 3.5E-05 7.6E-10 48.4 9.8 25 4-30 8-32 (125)
49 cd08346 PcpA_N_like N-terminal 98.2 4.6E-05 1E-09 48.0 10.2 85 4-90 6-125 (126)
50 cd08361 PpCmtC_N N-terminal do 98.1 7.9E-05 1.7E-09 48.1 10.7 86 4-95 11-121 (124)
51 cd07258 PpCmtC_C C-terminal do 98.1 4.8E-05 1E-09 50.8 9.9 86 5-96 5-117 (141)
52 PLN02367 lactoylglutathione ly 98.1 4.6E-05 1E-09 55.6 10.4 37 57-94 171-223 (233)
53 PRK06724 hypothetical protein; 98.1 5.2E-05 1.1E-09 49.9 9.9 84 4-93 12-123 (128)
54 cd07265 2_3_CTD_N N-terminal d 98.1 7E-05 1.5E-09 47.7 9.8 86 4-94 9-120 (122)
55 cd07252 BphC1-RGP6_N_like N-te 98.1 0.00014 3E-09 46.5 11.2 86 3-94 6-118 (120)
56 PLN02300 lactoylglutathione ly 98.1 8E-05 1.7E-09 54.9 11.2 89 4-96 29-151 (286)
57 cd07254 Glo_EDI_BRP_like_20 Th 98.1 0.00013 2.7E-09 46.3 10.8 87 2-94 4-118 (120)
58 cd07244 FosA FosA, a Fosfomyci 98.1 5.9E-05 1.3E-09 48.2 9.2 83 4-93 6-110 (121)
59 cd07266 HPCD_N_class_II N-term 98.1 9.9E-05 2.1E-09 46.8 10.0 86 4-95 9-120 (121)
60 cd07257 THT_oxygenase_C The C- 98.0 0.00011 2.3E-09 49.5 9.9 87 5-94 7-126 (153)
61 cd07243 2_3_CTD_C C-terminal d 98.0 0.0002 4.3E-09 47.7 10.9 87 5-93 12-125 (143)
62 cd07262 Glo_EDI_BRP_like_19 Th 98.0 0.00014 3.1E-09 46.2 9.5 84 4-92 5-123 (123)
63 cd07256 HPCD_C_class_II C-term 98.0 0.00022 4.8E-09 48.3 10.9 84 5-93 9-123 (161)
64 cd09014 BphC-JF8_C_like C-term 98.0 0.00022 4.7E-09 48.7 10.7 87 4-93 11-127 (166)
65 cd09013 BphC-JF8_N_like N-term 98.0 0.0003 6.4E-09 44.8 10.7 87 4-94 11-119 (121)
66 cd08360 MhqB_like_C C-terminal 97.9 0.00036 7.7E-09 45.5 10.4 87 5-95 9-122 (134)
67 cd07237 BphC1-RGP6_C_like C-te 97.9 0.00038 8.3E-09 46.8 10.4 86 5-94 15-132 (154)
68 cd08364 FosX FosX, a fosfomyci 97.8 0.00071 1.5E-08 44.1 10.7 86 5-94 10-123 (131)
69 cd08348 BphC2-C3-RGP6_C_like T 97.8 0.0012 2.6E-08 42.5 11.6 90 4-97 6-124 (134)
70 cd08347 PcpA_C_like C-terminal 97.8 0.00049 1.1E-08 46.7 9.9 87 4-94 6-121 (157)
71 TIGR02295 HpaD 3,4-dihydroxyph 97.8 0.00053 1.2E-08 50.1 10.6 88 3-94 8-116 (294)
72 COG3324 Predicted enzyme relat 97.8 0.00062 1.4E-08 45.4 9.7 88 5-94 15-126 (127)
73 TIGR03213 23dbph12diox 2,3-dih 97.7 0.00076 1.7E-08 49.4 10.7 85 5-94 148-264 (286)
74 cd07255 Glo_EDI_BRP_like_12 Th 97.7 0.0018 3.8E-08 41.0 11.0 85 4-94 7-120 (125)
75 cd07249 MMCE Methylmalonyl-CoA 97.7 0.00083 1.8E-08 42.3 9.1 25 4-30 5-29 (128)
76 TIGR03213 23dbph12diox 2,3-dih 97.6 0.0011 2.3E-08 48.6 10.2 84 4-93 8-118 (286)
77 TIGR03211 catechol_2_3 catecho 97.6 0.0018 3.8E-08 47.7 10.7 84 5-93 151-265 (303)
78 cd08358 Glo_EDI_BRP_like_21 Th 97.5 0.0025 5.4E-08 42.3 9.9 25 4-30 7-31 (127)
79 cd07242 Glo_EDI_BRP_like_6 Thi 97.4 0.0052 1.1E-07 39.0 10.6 83 4-93 6-128 (128)
80 PLN02300 lactoylglutathione ly 97.4 0.0038 8.2E-08 46.0 10.7 88 4-93 159-278 (286)
81 TIGR03211 catechol_2_3 catecho 97.3 0.0056 1.2E-07 45.0 10.5 86 4-95 9-120 (303)
82 TIGR02295 HpaD 3,4-dihydroxyph 97.1 0.012 2.7E-07 42.9 10.8 87 5-93 142-256 (294)
83 PRK01037 trmD tRNA (guanine-N( 96.9 0.0068 1.5E-07 46.7 8.3 82 5-94 253-355 (357)
84 COG3607 Predicted lactoylgluta 96.9 0.0047 1E-07 41.3 6.4 22 71-92 104-126 (133)
85 PF13669 Glyoxalase_4: Glyoxal 95.3 0.12 2.5E-06 32.5 6.6 24 5-30 5-28 (109)
86 TIGR01263 4HPPD 4-hydroxypheny 94.3 0.44 9.6E-06 36.2 8.5 26 3-30 6-31 (353)
87 PF14506 CppA_N: CppA N-termin 94.3 1 2.2E-05 30.0 9.1 89 1-93 2-114 (125)
88 COG0346 GloA Lactoylglutathion 93.5 0.1 2.2E-06 31.7 3.1 26 3-30 6-31 (138)
89 cd07250 HPPD_C_like C-terminal 87.6 0.63 1.4E-05 32.5 2.9 19 12-30 16-34 (191)
90 COG3565 Predicted dioxygenase 81.3 8.7 0.00019 25.6 5.9 82 6-92 11-128 (138)
91 COG2514 Predicted ring-cleavag 81.0 2.4 5.1E-05 31.7 3.6 25 4-30 173-197 (265)
92 KOG2943 Predicted glyoxalase [ 80.7 22 0.00047 26.7 9.2 84 12-95 28-145 (299)
93 TIGR01263 4HPPD 4-hydroxypheny 77.9 2.3 5E-05 32.3 2.8 19 12-30 171-189 (353)
94 PF07494 Reg_prop: Two compone 77.4 3.4 7.5E-05 19.2 2.4 14 76-89 7-20 (24)
95 COG2514 Predicted ring-cleavag 74.5 4.3 9.3E-05 30.4 3.3 25 4-30 15-39 (265)
96 PF15067 FAM124: FAM124 family 73.5 17 0.00036 26.8 6.1 75 12-90 141-235 (236)
97 KOG2943 Predicted glyoxalase [ 72.2 33 0.00071 25.7 7.4 24 4-29 154-177 (299)
98 PLN02875 4-hydroxyphenylpyruva 61.8 6.7 0.00015 30.9 2.3 17 12-28 191-207 (398)
99 PF11211 DUF2997: Protein of u 61.7 10 0.00022 21.0 2.4 22 7-28 18-39 (48)
100 PF08445 FR47: FR47-like prote 55.3 30 0.00064 20.8 4.0 26 2-29 56-81 (86)
101 PF13176 TPR_7: Tetratricopept 49.1 18 0.00039 17.9 1.9 12 12-23 15-26 (36)
102 COG0456 RimI Acetyltransferase 48.3 29 0.00063 22.6 3.4 25 4-30 130-154 (177)
103 COG3185 4-hydroxyphenylpyruvat 48.2 76 0.0016 24.9 5.9 21 9-30 178-198 (363)
104 PHA02978 hypothetical protein; 41.5 29 0.00062 22.8 2.4 19 76-94 75-93 (135)
105 PF14507 CppA_C: CppA C-termin 36.5 12 0.00026 24.0 0.1 18 73-90 83-100 (101)
106 KOG0638 4-hydroxyphenylpyruvat 31.5 36 0.00079 26.5 1.9 18 12-29 28-45 (381)
107 PF15524 Toxin_45: Putative to 29.9 26 0.00056 21.8 0.8 13 80-92 40-52 (94)
108 PF00515 TPR_1: Tetratricopept 29.3 49 0.0011 15.5 1.7 12 12-23 17-28 (34)
109 KOG3235 Subunit of the major N 28.9 55 0.0012 23.1 2.3 25 5-30 111-135 (193)
110 TIGR01643 YD_repeat_2x YD repe 28.7 75 0.0016 16.0 2.4 18 77-94 7-24 (42)
111 KOG4657 Uncharacterized conser 28.6 51 0.0011 24.3 2.2 19 12-30 147-165 (246)
112 smart00671 SEL1 Sel1-like repe 26.5 66 0.0014 15.1 1.9 12 12-23 21-32 (36)
113 PF11320 DUF3122: Protein of u 25.8 49 0.0011 22.3 1.6 15 78-92 19-33 (134)
114 PF13374 TPR_10: Tetratricopep 25.4 52 0.0011 15.8 1.4 15 12-26 18-32 (42)
115 PF08238 Sel1: Sel1 repeat; I 25.1 56 0.0012 15.8 1.4 12 12-23 24-35 (39)
116 PF13468 Glyoxalase_3: Glyoxal 25.0 2.2E+02 0.0047 19.0 7.0 25 4-30 5-29 (175)
117 PF07576 BRAP2: BRCA1-associat 24.7 91 0.002 20.1 2.7 21 4-27 58-78 (110)
118 PHA01745 hypothetical protein 24.6 60 0.0013 24.7 2.0 28 2-29 104-137 (306)
119 COG2442 Uncharacterized conser 23.1 23 0.0005 21.6 -0.3 18 3-22 54-71 (79)
120 PF13420 Acetyltransf_4: Acety 23.0 1.2E+02 0.0027 19.1 3.2 17 13-30 123-139 (155)
121 PHA01807 hypothetical protein 23.0 85 0.0018 21.2 2.4 18 4-22 119-136 (153)
122 PF01074 Glyco_hydro_38: Glyco 22.5 17 0.00037 26.3 -1.2 19 75-93 114-132 (275)
123 KOG2997 F-box protein FBX9 [Ge 21.2 67 0.0015 25.1 1.7 17 8-25 32-48 (366)
No 1
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.97 E-value=4.7e-31 Score=177.42 Aligned_cols=95 Identities=24% Similarity=0.445 Sum_probs=77.8
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc----ccccccCceEEEEEeeC-Cee------------------e
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR----KAEQELNSRLPAPFFLS-LTF------------------P 57 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~----~~~~~~~~i~ha~l~i~-~~i------------------~ 57 (102)
|+|||+|+|| |++||+||+++||+++..+ ++... ..+...++||||+|+++ ..| +
T Consensus 2 l~PYl~f~gn-~~~Al~fY~~vFgae~~~~-~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 2 LSPYLFFNGN-AREALAFYKEVFGAEELKR-VPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred cceEEEECCC-HHHHHHHHHHHhCceEEEE-EEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcccCCCeeE
Confidence 6899999987 9999999999999999887 33220 01122258999999999 666 5
Q ss_pred EEEEeeCcHHHHH----------------hhhcCeEEEEEcCCCCEEEEecccCCC
Q 046408 58 MILLQLRMLELLL----------------RWAARRVGKVKDPCGFTWLICSPVKKG 97 (102)
Q Consensus 58 ~l~l~~~d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~~~~~~ 97 (102)
+|.+.++|++++| +|||.|||+|+|||||.|+|+++.+..
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~~~~ 135 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPVESV 135 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCccCC
Confidence 6666678888888 999999999999999999999987653
No 2
>PRK10148 hypothetical protein; Provisional
Probab=99.96 E-value=1e-28 Score=167.78 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=75.3
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEe----cCcc------ccccc---ccCceEEEEEeeC-Cee----------
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRN----METK------RKAEQ---ELNSRLPAPFFLS-LTF---------- 56 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~----~~~~------~~~~~---~~~~i~ha~l~i~-~~i---------- 56 (102)
|+|||+|+|+ |+||++||+++||+++..+. +|+. ..+++ ..++||||+|+++ ..|
T Consensus 3 l~pyL~f~g~-a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~~ 81 (147)
T PRK10148 3 LSPYLSFAGN-CADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGK 81 (147)
T ss_pred eEEEEEeCCC-HHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCcC
Confidence 5899999987 99999999999999988662 1211 00111 2368999999998 666
Q ss_pred -----eEEEEeeCcHHH---HH---------------hhhcCeEEEEEcCCCCEEEEecccCCC
Q 046408 57 -----PMILLQLRMLEL---LL---------------RWAARRVGKVKDPCGFTWLICSPVKKG 97 (102)
Q Consensus 57 -----~~l~l~~~d~~~---~~---------------~~wG~~~g~v~D~fGv~W~i~~~~~~~ 97 (102)
++|+|.++|+++ +| +|||.|||+|+||||++|+|++...++
T Consensus 82 ~~~~~~~l~l~~~d~ee~~~~~~aLa~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 82 AHYSGFTLVLDTQDVEEGKRWFDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCCeEEEEEECCCHHHHHHHHHHhhCCCEEEecchhcchhhccEEEECCCCCEEEEEecCCCC
Confidence 677777778775 45 899999999999999999999975543
No 3
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=99.93 E-value=6.1e-25 Score=144.15 Aligned_cols=87 Identities=23% Similarity=0.427 Sum_probs=65.4
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEE--ecCcccccccccCceEEEEEeeC-Cee--------------eEEEEee
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINR--NMETKRKAEQELNSRLPAPFFLS-LTF--------------PMILLQL 63 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~--~~~~~~~~~~~~~~i~ha~l~i~-~~i--------------~~l~l~~ 63 (102)
|+|||+|+|+ |+||++||+++||...+.. .+|... ++ ..++||||+|+++ ..+ ++|+|.+
T Consensus 3 i~pyL~F~g~-a~eA~~fY~~vf~~~~i~~~~~~~~~~-~~-~~~~v~ha~l~i~g~~lm~~D~~~~~~~~~~~sl~i~~ 79 (116)
T PF06983_consen 3 ITPYLWFNGN-AEEALEFYKEVFGGSEIMTFGDYPDDE-PE-WKDKVMHAELTIGGQKLMASDGGPDFPFGNNISLCIEC 79 (116)
T ss_dssp EEEEEEESS--HHHHHHHHHHHSTTEEEEEEEE-TTTC-TT-HTTSEEEEEEEETTEEEEEEEESTS----TTEEEEEEE
T ss_pred eEEEEEeCCC-HHHHHHHHHHHcCCCEEEEEeECCCCC-CC-CCCcEEEEEEEECCeEEEEECCCCCCCCCCcEEEEEEc
Confidence 5899999998 9999999999999755433 233321 12 3468999999998 666 8999998
Q ss_pred CcHHH---HH-------hhhcCeEEEEEcCCCCEEEEe
Q 046408 64 RMLEL---LL-------RWAARRVGKVKDPCGFTWLIC 91 (102)
Q Consensus 64 ~d~~~---~~-------~~wG~~~g~v~D~fGv~W~i~ 91 (102)
++.++ +| ++|+ +||+|+||||+.|||.
T Consensus 80 ~~~ee~~~~f~~Ls~gG~~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 80 DDEEEIDRIFDKLSEGGQWFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp SSHHHHHHHHHHHHTTTETCC-EEEEEE-TTS-EEEEE
T ss_pred CCHHHHHHHHHHHHcCCCccc-eeEEEEeCCCCEEEeC
Confidence 87764 45 5556 9999999999999984
No 4
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.92 E-value=3.3e-24 Score=141.05 Aligned_cols=90 Identities=17% Similarity=0.281 Sum_probs=70.7
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcccc---cccccCceEEEEEeeC-Cee----------------eEEE
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKRK---AEQELNSRLPAPFFLS-LTF----------------PMIL 60 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~---~~~~~~~i~ha~l~i~-~~i----------------~~l~ 60 (102)
++|||+|+++ |+||++||+++||+++..+....... ++...++|+||+|+++ ..+ ++++
T Consensus 1 l~p~L~~~~~-~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~~~~~~~~l~ 79 (128)
T cd06588 1 ITPYLWFNGN-AEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPFTFGNGISLS 79 (128)
T ss_pred CeeEEeeCCC-HHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCCCCCCCEEEE
Confidence 6899999876 99999999999999998762211100 1123358999999998 666 5788
Q ss_pred EeeCc---HHHHH---------------hhhcCeEEEEEcCCCCEEEEe
Q 046408 61 LQLRM---LELLL---------------RWAARRVGKVKDPCGFTWLIC 91 (102)
Q Consensus 61 l~~~d---~~~~~---------------~~wG~~~g~v~D~fGv~W~i~ 91 (102)
+.++| ++++| +|||.|+|+|+||||+.|+|+
T Consensus 80 i~~~~~e~v~~~~~~l~~~g~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 80 VECDSEEEADRLFEALSEGGTVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EECCCHHHHHHHHHHHhcCCeEeccchhcCcccccEEEECCCCCEEEeC
Confidence 88876 45555 799999999999999999985
No 5
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.72 E-value=2.9e-16 Score=101.05 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=66.8
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccccCceEEEEEeeC-Cee---------------------eE
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQELNSRLPAPFFLS-LTF---------------------PM 58 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~i~ha~l~i~-~~i---------------------~~ 58 (102)
++|+|.++| +++|++||+++||+++... .+.+ ++ .+.|++|+++ +.+ ..
T Consensus 1 ~~p~l~v~d--~~~a~~FY~~~lG~~~~~~-~~~~---~~---~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 71 (122)
T cd08355 1 VWPTLRYRD--AAAAIDWLTDAFGFEERLV-VPDD---DG---GVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQG 71 (122)
T ss_pred CeEEEEECC--HHHHHHHHHHhcCCEEEEE-EeCC---CC---cEEEEEEEECCEEEEEecCCCcccccccccCCCceEE
Confidence 689999987 9999999999999998765 3221 22 4667777765 333 36
Q ss_pred EEEeeCcHHHHH----------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 59 ILLQLRMLELLL----------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 59 l~l~~~d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
+++.++|+++++ ++||.+.+.|+||+|+.|+|+.
T Consensus 72 ~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 72 VYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred EEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 888899999887 7899999999999999999974
No 6
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.69 E-value=4.1e-16 Score=105.16 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=67.5
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhC-CeEEEEe-cCcccccccccCceEEEEEeeC-Cee----------------eEEEE
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFG-AVEINRN-METKRKAEQELNSRLPAPFFLS-LTF----------------PMILL 61 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG-~~~~~~~-~~~~~~~~~~~~~i~ha~l~i~-~~i----------------~~l~l 61 (102)
++|+|.|+++ ++||++||.+.|- .++..++ +|.+ .+++...+|++++++++ ..+ +|+.+
T Consensus 6 it~~L~F~~~-AeeA~~fY~s~FpdS~i~~i~r~p~~-~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~f~fneA~S~~v 83 (151)
T COG3865 6 ITPFLWFDGN-AEEAMNFYLSTFPDSKIIGITRYPEG-EPGGKEGKVLVAEFTLNGQSFMALDGGPNTSFKFNEAFSFQV 83 (151)
T ss_pred ceeEEEECCc-HHHHHHHHHHhCCcceeeeeeecCCC-CCCCCCccEEEEEEEECCeEEEEEcCCCCcCCCcCccEEEEE
Confidence 5899999988 9999999999994 4554442 3332 23333458999999998 555 78888
Q ss_pred eeCcHHH---HH------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 62 QLRMLEL---LL------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 62 ~~~d~~~---~~------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
.+++.++ +| -.-.++.|+|+||||+.|||.-+
T Consensus 84 ~~~~q~E~Drlwnal~~~g~e~~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 84 ACDDQEEIDRLWNALSDNGGEAEACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EcCCHHHHHHHHHHHhccCcchhcceeEecccCcEEEEcHH
Confidence 8877654 44 11236899999999999999753
No 7
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.62 E-value=1.7e-14 Score=91.82 Aligned_cols=84 Identities=27% Similarity=0.513 Sum_probs=63.5
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccccCceEEEEEeeC-Cee-------------------eEEE
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQELNSRLPAPFFLS-LTF-------------------PMIL 60 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~i~ha~l~i~-~~i-------------------~~l~ 60 (102)
+.|+|.++| .++|++||+++||++.... .... ++ .+.++.+..+ ..+ ..++
T Consensus 3 ~~~~l~v~d--~~~a~~FY~~~lG~~~~~~-~~~~---~~---~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 73 (122)
T cd07246 3 VTPYLIVRD--AAAAIDFYKKAFGAEELER-MPDD---DG---RVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSLH 73 (122)
T ss_pred eeEEEEECC--HHHHHHHHHHhhCCEEEEE-EeCC---CC---CEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEEE
Confidence 579999987 9999999999999998765 2211 11 2334433332 211 6788
Q ss_pred EeeCcHHHHH----------------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 61 LQLRMLELLL----------------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 61 l~~~d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
+.++|+++++ .+||.+.+.++||+|+.|+|++.
T Consensus 74 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 74 LYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred EEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEecC
Confidence 8899999876 68999999999999999999863
No 8
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.28 E-value=1.3e-10 Score=74.39 Aligned_cols=87 Identities=22% Similarity=0.175 Sum_probs=57.3
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc---ccccccCceEEEEEe--------------e--CCeeeEEEEee
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR---KAEQELNSRLPAPFF--------------L--SLTFPMILLQL 63 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~---~~~~~~~~i~ha~l~--------------i--~~~i~~l~l~~ 63 (102)
..|.++| .+++.+||+++||++.... .+.+. ...+. ..+.-.... . ...-..+++.+
T Consensus 4 ~~l~v~D--~~~s~~FY~~~lG~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (125)
T cd07264 4 TIIYVED--VEKTLEFYERAFGFERRFL-HESGDYGELETGE-TTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFVT 79 (125)
T ss_pred EEEEEcC--HHHHHHHHHHhhCCeEEee-cCCCcEEEecCCc-EEEEEEcccccccccccCccCCccccCCCcEEEEEEc
Confidence 4577777 9999999999999997643 11110 00000 011111000 0 00115688889
Q ss_pred CcHHHHH----------------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 64 RMLELLL----------------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 64 ~d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
+|+++++ ++||.+.+.++||+|+.|.|.++
T Consensus 80 ~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 80 DDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred CCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 9999887 79999999999999999999764
No 9
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.26 E-value=9.3e-11 Score=75.24 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=59.1
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccccCceEE-----------EEEeeCCeeeEEEEeeCcHHHHH
Q 046408 2 KPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQELNSRLP-----------APFFLSLTFPMILLQLRMLELLL 70 (102)
Q Consensus 2 ~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~i~h-----------a~l~i~~~i~~l~l~~~d~~~~~ 70 (102)
.|.|.++| .++|++||+++||++.... .+.....+. +..+| .....+..-..+++.++|+++++
T Consensus 5 ~~~l~v~D--~~~a~~FY~~~lG~~~~~~-~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd~~~ 79 (120)
T cd09011 5 NPLLVVKD--IEKSKKFYEKVLGLKVVMD-FGENVTFEG--GFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFDAFL 79 (120)
T ss_pred EEEEEECC--HHHHHHHHHHhcCCEEeec-cCceEEEec--cceeccchhhhccCCcccccccCCceEEEEEehhhHHHH
Confidence 57899988 9999999999999987643 111000000 01111 00111111157788899999887
Q ss_pred -----------------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 71 -----------------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 -----------------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
.+||.|...++||+|+.|.|+++
T Consensus 80 ~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 80 DKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 68999999999999999999875
No 10
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.19 E-value=5.7e-10 Score=70.98 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=58.7
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc---cccccccCceEEE----EE-----eeCCeeeEEEEeeCcHHH
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETK---RKAEQELNSRLPA----PF-----FLSLTFPMILLQLRMLEL 68 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~---~~~~~~~~~i~ha----~l-----~i~~~i~~l~l~~~d~~~ 68 (102)
+.|.|.++| .++|.+||+++||++.... .+.- ...++.....++. .+ ...+.-+.+++.++|+++
T Consensus 3 ~~~~l~v~D--~~~s~~FY~~~lG~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~did~ 79 (119)
T cd08359 3 LYPVIVTDD--LAETADFYVRHFGFTVVFD-SDWYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDVDA 79 (119)
T ss_pred ceeEEEECC--HHHHHHHHHHhhCcEEEec-cCcEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCHHH
Confidence 579999998 9999999999999987753 1100 0001100000000 00 001111467888999998
Q ss_pred HH----------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 69 LL----------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 69 ~~----------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
++ .+||.+...++||+|+.|.|.+
T Consensus 80 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 80 EYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 87 6899999999999999999863
No 11
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.17 E-value=4e-10 Score=72.26 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=57.3
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-ccccccCceEEEEEe-eC-CeeeEEEEeeCcHHHHH-------
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR-KAEQELNSRLPAPFF-LS-LTFPMILLQLRMLELLL------- 70 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-~~~~~~~~i~ha~l~-i~-~~i~~l~l~~~d~~~~~------- 70 (102)
+.|+|.+.| .+++++||++ ||++.... .+.-. ...+. ..++..... -. ..-..+++.++|+++++
T Consensus 3 ~~~~l~v~D--l~~s~~FY~~-LGf~~~~~-~~~~~~l~~~~-~~l~l~~~~~~~~~~~~~~~~~v~did~~~~~l~~~G 77 (113)
T cd08356 3 IRPFIPAKD--FAESKQFYQA-LGFELEWE-NDNLAYFRLGN-CAFYLQDYYVKDWAENSMLHLEVDDLEAYYEHIKALG 77 (113)
T ss_pred ceecccccc--HHHHHHHHHH-hCCeeEec-CCCEEEEEcCC-EEEEeecCCCcccccCCEEEEEECCHHHHHHHHHHcC
Confidence 579999988 9999999987 99998754 21100 00010 011111100 00 00056788999999877
Q ss_pred --------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 71 --------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 71 --------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
.+||.|...++||+|+.|.|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 78 LPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred CcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 4799999999999999999863
No 12
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.16 E-value=7.9e-10 Score=70.97 Aligned_cols=87 Identities=17% Similarity=0.019 Sum_probs=58.8
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc--ccccccCceEEEEEe--eC--CeeeEEEEeeCcHHHHH----
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR--KAEQELNSRLPAPFF--LS--LTFPMILLQLRMLELLL---- 70 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~--~~~~~~~~i~ha~l~--i~--~~i~~l~l~~~d~~~~~---- 70 (102)
+.|.|.++| .++|++||++ ||++.... .+... ...+ +..+|-... .. ..-.++++.++|+++++
T Consensus 4 ~~~~l~v~D--l~~s~~FY~~-lG~~~~~~-~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~v~dvd~~~~~l~ 77 (120)
T cd08350 4 TIPNLPSRD--LDATEAFYAR-LGFSVGYR-QAAGYMILRRG--DLELHFFAHPDLDPATSPFGCCLRLPDVAALHAEFR 77 (120)
T ss_pred ccceeEcCC--HHHHHHHHHH-cCCEEEec-CCCCEEEEEcC--CEEEEEEecCcCCCCCCcceEEEEeCCHHHHHHHHH
Confidence 578999988 9999999999 99998754 22110 0001 112221111 00 01146788899998777
Q ss_pred ----h---------------hhcCeEEEEEcCCCCEEEEecc
Q 046408 71 ----R---------------WAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 ----~---------------~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
+ +||.|...++||+|+.|.|.++
T Consensus 78 ~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 78 AAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 2 4999999999999999999875
No 13
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.05 E-value=4.7e-09 Score=65.59 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=57.2
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc--ccccccCceEEEEEeeCC------eeeEEEEeeCcHHHHH---
Q 046408 2 KPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR--KAEQELNSRLPAPFFLSL------TFPMILLQLRMLELLL--- 70 (102)
Q Consensus 2 ~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~--~~~~~~~~i~ha~l~i~~------~i~~l~l~~~d~~~~~--- 70 (102)
.|-|.+++ .+++++||+++||++......+..- ...+ +..+|-.-.-+. .-..+++.++|+++++
T Consensus 1 ~~~i~v~d--~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (112)
T cd08349 1 VPVLPVSD--IERSLAFYRDVLGFEVDWEHPEPGYAFLSRG--GAQLMLSEHDGDEPVPLGRGGSVYIEVEDVDALYAEL 76 (112)
T ss_pred CCEEEECC--HHHHHHHHHhccCeEEEEEcCCCcEEEEEeC--CEEEEEeccCCCCCCCCCCcEEEEEEeCCHHHHHHHH
Confidence 48899988 9999999999999998765210110 0001 011111000001 1146788899998776
Q ss_pred --------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 71 --------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 71 --------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
.+||.+...++||+|+.|.|.+
T Consensus 77 ~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 77 KAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 4689899999999999999863
No 14
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.04 E-value=2.5e-09 Score=68.36 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=50.0
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc----cccccccCceEEEEE---e--------eCCeeeEEEEee---Cc
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK----RKAEQELNSRLPAPF---F--------LSLTFPMILLQL---RM 65 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~----~~~~~~~~~i~ha~l---~--------i~~~i~~l~l~~---~d 65 (102)
-|.++| .++|++||++ ||++.....-... ..+++. .++-... . ....-..+++.+ +|
T Consensus 5 ~l~V~D--~~~a~~FY~~-LGf~~~~~~~~~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d 79 (122)
T cd07235 5 GIVVAD--MAKSLDFYRR-LGFDFPEEADDEPHVEAVLPGGV--RLAWDTVESIRSFTPGWTPTGGHRIALAFLCETPAE 79 (122)
T ss_pred EEEecc--HHHHHHHHHH-hCceecCCcCCCCcEEEEeCCCE--EEEEEcccceeeecCCCCCCCCCcEEEEEEcCCHHH
Confidence 367777 9999999975 9998753210000 000110 1211110 0 001113555554 47
Q ss_pred HHHHH----------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 66 LELLL----------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 66 ~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
+++++ .+||.+++.++||+|+.|.|.+
T Consensus 80 vd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~ 122 (122)
T cd07235 80 VDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLFA 122 (122)
T ss_pred HHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEeC
Confidence 77776 7899999999999999999863
No 15
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.03 E-value=3.7e-09 Score=65.93 Aligned_cols=84 Identities=14% Similarity=-0.038 Sum_probs=54.2
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-ccccc---cCceEEEEEeeC----CeeeEEEEeeCcHHHHH------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKR-KAEQE---LNSRLPAPFFLS----LTFPMILLQLRMLELLL------ 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-~~~~~---~~~i~ha~l~i~----~~i~~l~l~~~d~~~~~------ 70 (102)
|.++| .++|.+||+++||++.... .+... ...+. ..........-. .....+++.++|+++++
T Consensus 1 l~v~d--~~~a~~FY~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dv~~~~~~l~~~ 77 (108)
T PF12681_consen 1 LPVSD--LEAAAAFYEDVLGFEVVFD-DPDYVDFSLGFRFHDGVIEFLQFPDPPGPPGGGFHLCFEVEDVDALYERLKEL 77 (108)
T ss_dssp EEESS--HHHHHHHHHHTTTSEEEEE-ETSEEEEEETEEEEEEEEEEEEEESSSSSSSSEEEEEEEESHHHHHHHHHHHT
T ss_pred CccCC--HHHHHHHHHHhcCCEEEEe-CCCeEEEEeccchhhhhHHHccCCccccCCCceeEEEEEEcCHHHHHHHHHHC
Confidence 56777 9999999999999998874 22110 00010 001111111111 12278888899999887
Q ss_pred ----------hhhcCeEEEEEcCCCCEEEEe
Q 046408 71 ----------RWAARRVGKVKDPCGFTWLIC 91 (102)
Q Consensus 71 ----------~~wG~~~g~v~D~fGv~W~i~ 91 (102)
.+||.+...++||+|+.|.|.
T Consensus 78 G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 78 GAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp TSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred CCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 689999999999999999874
No 16
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.03 E-value=6.2e-09 Score=65.70 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=59.6
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc--ccccccCceEEEEEeeC------CeeeEEEEeeCcHHHHH--
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR--KAEQELNSRLPAPFFLS------LTFPMILLQLRMLELLL-- 70 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~--~~~~~~~~i~ha~l~i~------~~i~~l~l~~~d~~~~~-- 70 (102)
+.|.|.++| .+++++||+++||++.... ...-. ...+ ..|.++.+. .....+++.++|+++++
T Consensus 2 ~~~~l~v~D--l~~s~~FY~~~lG~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~~~ 74 (112)
T cd07238 2 IVPNLPVAD--PEAAAAFYADVLGLDVVMD-HGWIATFASPQ----NMTVQVSLATEGGTATVVPDLSIEVDDVDAALAR 74 (112)
T ss_pred ccceEecCC--HHHHHHHHHHhcCceEEEc-CCceEEEeecC----CCCcEEEEecCCCCCCCCCEEEEEeCCHHHHHHH
Confidence 568999988 9999999999999997642 11000 0000 001222111 11257888899999876
Q ss_pred --------------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 71 --------------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 --------------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
.+||.+...+.||+|+.|.|.++
T Consensus 75 l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 75 AVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 58998999999999999999864
No 17
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=98.98 E-value=1.4e-08 Score=66.84 Aligned_cols=90 Identities=8% Similarity=0.048 Sum_probs=59.8
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-c----ccccccCceEEEEE----------eeC-CeeeEEEEeeCcHH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-R----KAEQELNSRLPAPF----------FLS-LTFPMILLQLRMLE 67 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~----~~~~~~~~i~ha~l----------~i~-~~i~~l~l~~~d~~ 67 (102)
-|.++| .++|++||+++||+++... ...+ . ...+....++.... ... ..+..+++.|+|++
T Consensus 5 ~i~V~D--~e~s~~FY~~vLGf~~~~~-~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dvd 81 (136)
T cd08342 5 EFYVGN--AKQLASWFSTKLGFEPVAY-HGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDAA 81 (136)
T ss_pred EEEeCC--HHHHHHHHHHhcCCeEEEe-cCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCHH
Confidence 467877 9999999999999998765 2211 0 00110001111100 001 12257889999999
Q ss_pred HHH----------------hhhcCeEEEEEcCCCCEEEEecccCC
Q 046408 68 LLL----------------RWAARRVGKVKDPCGFTWLICSPVKK 96 (102)
Q Consensus 68 ~~~----------------~~wG~~~g~v~D~fGv~W~i~~~~~~ 96 (102)
+.+ .+||.|...++||+|+.|+|.+....
T Consensus 82 a~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 82 AAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred HHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 887 48999999999999999999886543
No 18
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.81 E-value=1.2e-07 Score=59.72 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=55.6
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc---ccccccCceEEEEEeeC------CeeeEEEEeeCcHHHHH---
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR---KAEQELNSRLPAPFFLS------LTFPMILLQLRMLELLL--- 70 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~---~~~~~~~~i~ha~l~i~------~~i~~l~l~~~d~~~~~--- 70 (102)
..|.++| .+++++||+++||+++.....+... ...+ +.....-+... .....+++.++|+++.+
T Consensus 4 i~l~v~d--~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~v~di~~~~~~l 79 (114)
T cd07247 4 FELPTTD--PERAKAFYGAVFGWTFEDMGDGGGDYAVFSTG--GGAVGGLMKAPEPAAGSPPGWLVYFAVDDVDAAAARV 79 (114)
T ss_pred EEeeCCC--HHHHHHHHHhccCceeeeccCCCCceEEEEeC--CccEEEEecCCCCCCCCCCeEEEEEEeCCHHHHHHHH
Confidence 3467777 9999999999999987643110010 0000 00111111111 11167888999999877
Q ss_pred -------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 71 -------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 71 -------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
.+|+.+...++||+|+.|.|.+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 80 EAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 5778899999999999999863
No 19
>PRK10291 glyoxalase I; Provisional
Probab=98.72 E-value=4.3e-07 Score=58.89 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=55.4
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEe-cCccc-------ccccccCceEEEEEee---------CCeeeEEEEeeCcHH
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRN-METKR-------KAEQELNSRLPAPFFL---------SLTFPMILLQLRMLE 67 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~-------~~~~~~~~i~ha~l~i---------~~~i~~l~l~~~d~~ 67 (102)
|.+.| .++|++||+++||+++.... .+... ..+.....++ ++.. +..+..+++.++|++
T Consensus 2 l~V~D--le~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~~~hlaf~V~d~~ 77 (129)
T PRK10291 2 LRVGD--LQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVI--ELTYNWGVDKYELGTAYGHIALSVDNAA 77 (129)
T ss_pred EEecC--HHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceE--EeeecCCCCCCcCCCCeeEEEEEeCCHH
Confidence 56777 99999999999999976541 11100 0000000111 2211 112246888999998
Q ss_pred HHH----------------hhhcCe-EEEEEcCCCCEEEEecccCCC
Q 046408 68 LLL----------------RWAARR-VGKVKDPCGFTWLICSPVKKG 97 (102)
Q Consensus 68 ~~~----------------~~wG~~-~g~v~D~fGv~W~i~~~~~~~ 97 (102)
+++ .+||.+ .+.+.||+|+.|.|.+..+.+
T Consensus 78 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 78 EACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 776 346754 467899999999999876543
No 20
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.68 E-value=6.9e-07 Score=56.30 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=53.0
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-------ccccccCceEEEE-Ee--------eC-CeeeEEEEeeCcH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETKR-------KAEQELNSRLPAP-FF--------LS-LTFPMILLQLRML 66 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-------~~~~~~~~i~ha~-l~--------i~-~~i~~l~l~~~d~ 66 (102)
.|.++| .++|++||+++||++........+. ...+ +..++-. .. .. ..+..+++.++|+
T Consensus 8 ~l~v~d--~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v~d~ 83 (125)
T cd08352 8 AIICSD--YEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNG--GYQLELFSFPNPPERPSYPEACGLRHLAFSVEDI 83 (125)
T ss_pred EEEcCC--HHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCC--CcEEEEEEcCCCCCCCCCCcCCCceEEEEEeCCH
Confidence 356666 9999999999999997643111110 0001 0111100 00 01 1224678889999
Q ss_pred HHHH----------------hhhcCeEEEEEcCCCCEEEEe
Q 046408 67 ELLL----------------RWAARRVGKVKDPCGFTWLIC 91 (102)
Q Consensus 67 ~~~~----------------~~wG~~~g~v~D~fGv~W~i~ 91 (102)
++++ .+||.++..++||+|+.|.|.
T Consensus 84 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~ 124 (125)
T cd08352 84 EAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELY 124 (125)
T ss_pred HHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEec
Confidence 8776 467888999999999999985
No 21
>PRK11478 putative lyase; Provisional
Probab=98.64 E-value=6.2e-07 Score=57.59 Aligned_cols=84 Identities=10% Similarity=0.156 Sum_probs=53.1
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCccc------c-cccccCceEEE-EEee--------C-CeeeEEEEeeCcHH
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKR------K-AEQELNSRLPA-PFFL--------S-LTFPMILLQLRMLE 67 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~------~-~~~~~~~i~ha-~l~i--------~-~~i~~l~l~~~d~~ 67 (102)
|.++| .++|++||+++||.++......+.. . ..+ +..++- +... . ..+..+++.++|++
T Consensus 12 l~v~D--~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~g~~hi~f~v~d~~ 87 (129)
T PRK11478 12 IIATD--YAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNG--QYVIELFSFPFPPERPSRPEACGLRHLAFSVDDID 87 (129)
T ss_pred EEcCC--HHHHHHHHHHHhCCEecccccccccccceeeEecCC--CcEEEEEEecCCCCCCCCCCCCceeEEEEEeCCHH
Confidence 56666 9999999999999997532111100 0 001 011110 0000 0 11247788899998
Q ss_pred HHH----------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 68 LLL----------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 68 ~~~----------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
+++ .+||.++..++||+|+.++|.+
T Consensus 88 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 88 AAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred HHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 876 3478899999999999999865
No 22
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=98.64 E-value=1.3e-06 Score=55.08 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
|.+.+ .+++++||+++||++....
T Consensus 7 i~v~d--~~~~~~FY~~~lG~~~~~~ 30 (128)
T PF00903_consen 7 IRVKD--LEKAIDFYTDVLGFRLVEE 30 (128)
T ss_dssp EEESC--HHHHHHHHHHTTTSEEEEE
T ss_pred EEcCC--HHHHHHHHHHHhCCcEEee
Confidence 56766 9999999999999998865
No 23
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.63 E-value=4.8e-07 Score=57.05 Aligned_cols=84 Identities=13% Similarity=-0.001 Sum_probs=49.4
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc---cccccccCceEEEEEe-----eC-CeeeEEEEeeCc---HHHHH-
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK---RKAEQELNSRLPAPFF-----LS-LTFPMILLQLRM---LELLL- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~---~~~~~~~~~i~ha~l~-----i~-~~i~~l~l~~~d---~~~~~- 70 (102)
.|.+.+ .++|++||+++||.+.... .+.- ...++. ...++..-. .. .....+++.+++ +++++
T Consensus 3 ~l~v~d--~~~a~~FY~~~lg~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 78 (114)
T cd07261 3 LLYVED--PAASAEFYSELLGREPVEL-SPTFALFVLGSGV-KLGLWSRHTVEPASDATGGGSELAFMVDDGAAVDALYA 78 (114)
T ss_pred EEEECC--HHHHHHHHHHHcCCCccCC-CCceEEEEeCCCc-EEEEeeccccCCCCCCCCCceEEEEEcCCHHHHHHHHH
Confidence 467777 9999999999999986543 1100 000110 000000000 00 111466777765 55544
Q ss_pred ---------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 71 ---------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 71 ---------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
.+|| +...++||+|+.|.|.+
T Consensus 79 ~~~~~g~~v~~~~~~~~~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 79 EWQAKGVKIIQEPTEMDFG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHCCCeEecCccccCCc-cEEEEECCCCCEEEeeC
Confidence 6888 56899999999999874
No 24
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.56 E-value=1.2e-06 Score=55.33 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=53.7
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-----ccccccCceEEEEE-----------e-eC-CeeeEEEEee
Q 046408 2 KPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR-----KAEQELNSRLPAPF-----------F-LS-LTFPMILLQL 63 (102)
Q Consensus 2 ~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-----~~~~~~~~i~ha~l-----------~-i~-~~i~~l~l~~ 63 (102)
...|.+.+ .+++++||+++||+++..+ +.+. ..++ ..++-.. . -+ ..+..+++.+
T Consensus 3 ~~~l~v~d--~~~s~~Fy~~~lG~~~~~~--~~~~~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 3 ETALYVDD--LEAAEAFYEDVLGLELMLK--EDRRLAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred EEEEEeCC--HHHHHHHHHhccCCEEeec--CCCceEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 56788888 9999999999999998753 1110 0111 1111100 0 01 1122334444
Q ss_pred --CcHHHHH---------------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 64 --RMLELLL---------------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 64 --~d~~~~~---------------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
+|+++++ ..||.+...++||+|+.|.+.++
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 5777666 37888999999999999999764
No 25
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=98.56 E-value=8.8e-07 Score=56.48 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=50.2
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEe-cCccc-------ccccccCceEEEEE---------ee-CCeeeEEEEeeCc
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRN-METKR-------KAEQELNSRLPAPF---------FL-SLTFPMILLQLRM 65 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~-------~~~~~~~~i~ha~l---------~i-~~~i~~l~l~~~d 65 (102)
-|.++| .+++++||+++||.+..... .+... ..+... .+++..- .. +..+..+++.++|
T Consensus 6 ~l~v~D--~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i-~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d 82 (128)
T TIGR03081 6 GIAVPD--LEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKV-ELLEPLGEDSPIAKFLEKNGGGIHHIAIEVDD 82 (128)
T ss_pred EEEeCC--HHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEE-EEEecCCCCChHHHHHhcCCCceEEEEEEcCC
Confidence 366776 99999999999999876431 11100 000000 0000000 00 0111368889999
Q ss_pred HHHHH-----------------hhhcCeEEEE--EcCCCCEEEEe
Q 046408 66 LELLL-----------------RWAARRVGKV--KDPCGFTWLIC 91 (102)
Q Consensus 66 ~~~~~-----------------~~wG~~~g~v--~D~fGv~W~i~ 91 (102)
+++++ .+||.+...+ +||+|+.|.+.
T Consensus 83 i~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~ 127 (128)
T TIGR03081 83 IEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELE 127 (128)
T ss_pred HHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEec
Confidence 98876 3477666666 79999999885
No 26
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.53 E-value=1.7e-06 Score=56.71 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=32.3
Q ss_pred eEEEEeeCcHHHHH----------------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 57 PMILLQLRMLELLL----------------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 57 ~~l~l~~~d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
..+++.++|+++++ .+||.|.+.++||+|+.|.|.+.
T Consensus 89 ~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 89 RRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred eEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 47888999999887 45889999999999999999864
No 27
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.51 E-value=3.9e-06 Score=52.26 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=51.6
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-------ccccccCceEEEEEee--------C-CeeeEEEEeeCcHHH
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKR-------KAEQELNSRLPAPFFL--------S-LTFPMILLQLRMLEL 68 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-------~~~~~~~~i~ha~l~i--------~-~~i~~l~l~~~d~~~ 68 (102)
|.+.+ .+++.+||+++||.++.......+. ..++. +..++-.-.. . .....+.+.++|+++
T Consensus 4 l~v~d--~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~ 80 (119)
T cd07263 4 LYVDD--QDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSP-ETSLVLAPPANPAAMSGLQPGGTPGLVLATDDIDA 80 (119)
T ss_pred EEeCC--HHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCC-eeEEEEeCCCCccccccccCCCceEEEEEehHHHH
Confidence 56766 8999999999999998764110110 00000 0111111000 0 112577888999988
Q ss_pred HH---------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 69 LL---------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 69 ~~---------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
++ ...+.+...++||+|+.|.|.+
T Consensus 81 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 81 TYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 76 2223488999999999999863
No 28
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.50 E-value=2.5e-06 Score=54.18 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=49.3
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-ccccccCceEEEEEe-------e----CCe--e--eEEEEeeCcHHH
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKR-KAEQELNSRLPAPFF-------L----SLT--F--PMILLQLRMLEL 68 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-~~~~~~~~i~ha~l~-------i----~~~--i--~~l~l~~~d~~~ 68 (102)
|.++| .+++++||+++||++.......... ...+ ..++-.... . +.. . +++.+.++|+++
T Consensus 5 l~v~D--l~~s~~FY~~~lG~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~dv~~ 80 (125)
T cd08357 5 IPVRD--LEAARAFYGDVLGCKEGRSSETWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEEFDA 80 (125)
T ss_pred EEeCC--HHHHHHHHHHhcCCEEeeccCCcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHHHHH
Confidence 56666 9999999999999987543100000 0001 011111110 0 000 0 345667788888
Q ss_pred HH--------------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 69 LL--------------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 69 ~~--------------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
++ .+++.+...++||+|+.|.|.+
T Consensus 81 ~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 81 LAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 77 1234578899999999999875
No 29
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.46 E-value=2.6e-06 Score=53.64 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=49.9
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc---ccccccCceEEE-E---E---------eeCCeeeEEEEe---eC
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETKR---KAEQELNSRLPA-P---F---------FLSLTFPMILLQ---LR 64 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~---~~~~~~~~i~ha-~---l---------~i~~~i~~l~l~---~~ 64 (102)
.|.+++ .++|.+||+++||.++.... .+.. ..++ ..++. + + ..+..-..+++. ++
T Consensus 3 ~l~v~d--~~~a~~FY~~~lg~~~~~~~-~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 3 TLGVAD--LARSRAFYEALLGWKPSADS-NDGVAFFQLGG---LVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eEeeCC--HHHHHHHHHHhcCceecccC-CCceEEEEcCC---eEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 467777 99999999999999976431 1000 0011 11110 0 0 000000334444 35
Q ss_pred cHHHHH----------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 65 MLELLL----------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 65 d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
|+++++ .+||.+...++||+|+.|.|..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 666655 6798899999999999999874
No 30
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.46 E-value=5e-06 Score=52.76 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=52.7
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-c-ccccccCceEEEEEee-C-CeeeEEEEeeCcHHHHH----------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETK-R-KAEQELNSRLPAPFFL-S-LTFPMILLQLRMLELLL---------- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~-~~~~~~~~i~ha~l~i-~-~~i~~l~l~~~d~~~~~---------- 70 (102)
|.++| .++|.+||++ ||.++..+ .... . ...+. ...++. +.. . ..+..+++.++|.+++.
T Consensus 9 l~v~D--l~~s~~FY~~-lGl~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~af~v~~~~~~~~~~~~~g~~~ 82 (113)
T cd07267 9 FEHPD--LDKAERFLTD-FGLEVAAR-TDDELYYRGYGT-DPFVYV-ARKGEKARFVGAAFEAASRADLEKAAALPGASV 82 (113)
T ss_pred EccCC--HHHHHHHHHH-cCCEEEEe-cCCeEEEecCCC-ccEEEE-cccCCcCcccEEEEEECCHHHHHHHHHcCCCee
Confidence 45555 9999999999 99987654 1110 0 00110 011111 111 1 23356778888877665
Q ss_pred -----hhhcCeEEEEEcCCCCEEEEecc
Q 046408 71 -----RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 -----~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
.+||.+...++||+|+.|.|.+.
T Consensus 83 ~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 83 IDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred ecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 37888999999999999999875
No 31
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.45 E-value=4.5e-06 Score=52.78 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=53.2
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-cccccccCceEEEEEee---C-CeeeEEEEee---CcHHHHH-----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-RKAEQELNSRLPAPFFL---S-LTFPMILLQL---RMLELLL----- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~~~~~~~~~i~ha~l~i---~-~~i~~l~l~~---~d~~~~~----- 70 (102)
.|.++| .+++.+||+++||.+.... .+.. ..... +.. +..+.+ . ..+..+.+.+ +++++++
T Consensus 8 ~l~v~d--~~~s~~FY~~~lG~~~~~~-~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~~ 81 (120)
T cd08362 8 GLGVPD--LAAAAAFYREVWGLSVVAE-DDGIVYLRAT--GSE-HHILRLRRSDRNRLDVVSFSVASRADVDALARQVAA 81 (120)
T ss_pred EEecCC--HHHHHHHHHhCcCcEEEEe-cCCEEEEECC--CCc-cEEEEeccCCCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 466666 8999999999999997644 1110 00000 011 111211 1 1224556666 4555554
Q ss_pred -------------hhhcCeEEEEEcCCCCEEEEecccC
Q 046408 71 -------------RWAARRVGKVKDPCGFTWLICSPVK 95 (102)
Q Consensus 71 -------------~~wG~~~g~v~D~fGv~W~i~~~~~ 95 (102)
.+||.+...++||+|+.+.|.+..+
T Consensus 82 ~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 119 (120)
T cd08362 82 RGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADVE 119 (120)
T ss_pred cCCceecCCcccCCCCCceEEEEECCCCCEEEEEeccc
Confidence 4688889999999999999987654
No 32
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.42 E-value=4.7e-06 Score=53.53 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=50.2
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc---cccccccCceEEEEEee---CCeeeEEEEee--CcHHHHH----
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINRNMETK---RKAEQELNSRLPAPFFL---SLTFPMILLQL--RMLELLL---- 70 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~---~~~~~~~~~i~ha~l~i---~~~i~~l~l~~--~d~~~~~---- 70 (102)
+-|.+.| .++|++||+++||.+.... ...- ....+ ..+ .+.- ......+.+.+ +|+++++
T Consensus 8 v~l~v~D--l~~s~~FY~~~lG~~~~~~-~~~~~~~~~~~~---~~l--~~~~~~~~~~~~h~a~~v~~~dl~~~~~~l~ 79 (123)
T cd08351 8 TIVPARD--REASAEFYAEILGLPWAKP-FGPFAVVKLDNG---VSL--DFAQPDGEIPPQHYAFLVSEEEFDRIFARIR 79 (123)
T ss_pred EEEEcCC--HHHHHHHHHHhcCCEeeec-cCCEEEEEcCCC---cEE--EEecCCCCCCcceEEEEeCHHHHHHHHHHHH
Confidence 3567777 9999999999999987642 1100 00011 011 0111 01112333333 4677665
Q ss_pred ------------h-------hhcCeEEEEEcCCCCEEEEecc
Q 046408 71 ------------R-------WAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 ------------~-------~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
+ +||.|...++||+|+.|.|.+.
T Consensus 80 ~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 80 ERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 1 4888999999999999999865
No 33
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.42 E-value=5.7e-06 Score=53.06 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=49.1
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-----ccccccCceEEEE---E----------eeCCeeeEEEEee
Q 046408 2 KPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR-----KAEQELNSRLPAP---F----------FLSLTFPMILLQL 63 (102)
Q Consensus 2 ~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-----~~~~~~~~i~ha~---l----------~i~~~i~~l~l~~ 63 (102)
...|.+.| .++|++||++ ||++.... .+.+. ..++ ..++... + ........+++.+
T Consensus 3 ~v~l~V~D--l~~s~~FY~~-lGf~~~~~-~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v 76 (124)
T cd09012 3 FINLPVKD--LEKSTAFYTA-LGFEFNPQ-FSDEKAACMVISDN--IFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSA 76 (124)
T ss_pred EEEeecCC--HHHHHHHHHH-CCCEEccc-cCCCCeEEEEECCc--eEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeC
Confidence 35678887 9999999976 99987642 22110 0011 0121110 0 0011124577777
Q ss_pred C---cHHHHH----------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 64 R---MLELLL----------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 64 ~---d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
+ |+++++ ++|+ +...++||+|+.|.|.+
T Consensus 77 ~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~-~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 77 DSREEVDELVEKALAAGGKEFREPQDHGFM-YGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCHHHHHHHHHHHHHCCCcccCCcccCCce-EEEEEECCCCCEEEEEE
Confidence 6 455555 4554 55789999999999974
No 34
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=98.41 E-value=8.5e-06 Score=51.38 Aligned_cols=83 Identities=13% Similarity=0.225 Sum_probs=51.1
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEe-cCccc-------ccccccCceEEEEEee----------CCeeeEEEEeeCc
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRN-METKR-------KAEQELNSRLPAPFFL----------SLTFPMILLQLRM 65 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~-------~~~~~~~~i~ha~l~i----------~~~i~~l~l~~~d 65 (102)
-|.+++ .++|++||+++||++..... .+... .+++.....+ ++.. +..+..+++.++|
T Consensus 5 ~i~v~d--~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 5 MLRVKD--LEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVL--ELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred EEEecC--cHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEE--EEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 355666 89999999999999976531 11100 0010000111 1111 1123567788899
Q ss_pred HHHHH---------------hhhcCeEEEEEcCCCCEEEE
Q 046408 66 LELLL---------------RWAARRVGKVKDPCGFTWLI 90 (102)
Q Consensus 66 ~~~~~---------------~~wG~~~g~v~D~fGv~W~i 90 (102)
+++++ ...+.++..++||+|+.|+|
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~ 120 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIEL 120 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEe
Confidence 98876 23567889999999999987
No 35
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=98.41 E-value=9.4e-06 Score=54.12 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=53.6
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEEe-cCccc-------ccccccCceEEEEEee---------CCeeeEEEEeeCc
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINRN-METKR-------KAEQELNSRLPAPFFL---------SLTFPMILLQLRM 65 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~-------~~~~~~~~i~ha~l~i---------~~~i~~l~l~~~d 65 (102)
..|.+.+ .++|.+||+++||+++.... .+... ..+. ......++.. +..+..+++.++|
T Consensus 21 v~l~v~D--l~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~g~~hi~f~v~d 96 (150)
T TIGR00068 21 TMLRVGD--LDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDE--TSAAVIELTHNWGTEKYDLGNGFGHIAIGVDD 96 (150)
T ss_pred EEEEecC--HHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCC--CCccEEEEeecCCCCcccCCCceeEEEEecCC
Confidence 4577777 99999999999999986541 11110 0000 0000111111 1122567888999
Q ss_pred HHHHH----------------hhhc-CeEEEEEcCCCCEEEEeccc
Q 046408 66 LELLL----------------RWAA-RRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 66 ~~~~~----------------~~wG-~~~g~v~D~fGv~W~i~~~~ 94 (102)
+++++ .+.+ .+...++||+|+.|.|.++.
T Consensus 97 ld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 97 VYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred HHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 98876 1222 25677899999999998754
No 36
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.40 E-value=4e-06 Score=52.51 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=49.1
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc--ccccccCceEEEEE---eeC-CeeeEEEEee--CcHHHHH-----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETKR--KAEQELNSRLPAPF---FLS-LTFPMILLQL--RMLELLL----- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~--~~~~~~~~i~ha~l---~i~-~~i~~l~l~~--~d~~~~~----- 70 (102)
.|.++| .+++++||+++||.+.... ..... ...+ ..++-..- ... ..+..+++.+ +|+++++
T Consensus 3 ~l~v~d--~~~s~~Fy~~~lg~~~~~~-~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~hiaf~v~~~d~~~~~~~l~~ 77 (113)
T cd08345 3 TLIVKD--LNKSIAFYRDILGAELIYS-SSKEAYFELAG--LWICLMEEDSLQGPERTYTHIAFQIQSEEFDEYTERLKA 77 (113)
T ss_pred eEEECC--HHHHHHHHHHhcCCeeeec-cCceeEEEecC--eEEEeccCCCcCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 367777 9999999999999997654 11100 0000 01110000 000 1112444444 5677665
Q ss_pred -----------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 71 -----------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 -----------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
..++.+...++||+|+.|.|.+.
T Consensus 78 ~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 78 LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred cCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 23456888999999999999853
No 37
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=98.40 E-value=8.6e-06 Score=55.44 Aligned_cols=40 Identities=23% Similarity=0.081 Sum_probs=30.4
Q ss_pred eEEEEeeCcHHHHH-------------h---hh-c---CeEEEEEcCCCCEEEEecccCC
Q 046408 57 PMILLQLRMLELLL-------------R---WA-A---RRVGKVKDPCGFTWLICSPVKK 96 (102)
Q Consensus 57 ~~l~l~~~d~~~~~-------------~---~w-G---~~~g~v~D~fGv~W~i~~~~~~ 96 (102)
..+++.++|++++. . .+ | .+...++||+|+.|.|.++.++
T Consensus 95 ~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 95 FHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred eEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 36778889998876 0 11 1 2788999999999999987654
No 38
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.39 E-value=1.3e-05 Score=52.02 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=53.1
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc--c---ccccccCceEEEEEeeC-----CeeeEEEEeeCcHH---HHH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK--R---KAEQELNSRLPAPFFLS-----LTFPMILLQLRMLE---LLL 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~--~---~~~~~~~~i~ha~l~i~-----~~i~~l~l~~~d~~---~~~ 70 (102)
.|.+++ .++|++||+++||+++......+. . ...+ + . |..+.+. ..+..+++.++|++ +++
T Consensus 4 ~l~V~d--l~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~--~-~-~~~l~~~~~~~~~~~~hl~~~v~d~~~~~~~~ 77 (131)
T cd08343 4 VLRTPD--VAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCD--E-D-HHDLALFPGPERPGLHHVAFEVESLDDILRAA 77 (131)
T ss_pred EEEcCC--HHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcC--C-C-cceEEEEcCCCCCCeeEEEEEcCCHHHHHHHH
Confidence 366766 999999999999999765411000 0 0000 0 0 1111111 12256778888775 333
Q ss_pred ----------------hhh-cCeEEEEEcCCCCEEEEecccCCC
Q 046408 71 ----------------RWA-ARRVGKVKDPCGFTWLICSPVKKG 97 (102)
Q Consensus 71 ----------------~~w-G~~~g~v~D~fGv~W~i~~~~~~~ 97 (102)
.++ +.+++.++||+|+.|.|..+....
T Consensus 78 ~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 121 (131)
T cd08343 78 DRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYRI 121 (131)
T ss_pred HHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCccc
Confidence 233 357789999999999999766543
No 39
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.33 E-value=1.4e-05 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEIN 29 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~ 29 (102)
.|.++| .+++++||+++||++...
T Consensus 6 ~l~v~d--l~~s~~FY~~~lg~~~~~ 29 (125)
T cd07241 6 AIWTKD--LERMKAFYVTYFGATSNE 29 (125)
T ss_pred EEEecC--HHHHHHHHHHHhCCEeec
Confidence 467777 999999999999998753
No 40
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.33 E-value=2.1e-05 Score=47.55 Aligned_cols=81 Identities=19% Similarity=0.071 Sum_probs=50.5
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCc--cc---ccccccCceEEEEEee------C-CeeeEEEEeeCcHHHHH--
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMET--KR---KAEQELNSRLPAPFFL------S-LTFPMILLQLRMLELLL-- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~--~~---~~~~~~~~i~ha~l~i------~-~~i~~l~l~~~d~~~~~-- 70 (102)
|.+++ .+++.+||+++||++.... ... .. ...+ +..++-.-.- + ..+..+++.++|.++.+
T Consensus 4 i~~~d--~~~~~~fy~~~lg~~~~~~-~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (112)
T cd06587 4 LTVSD--LEAAVAFYEEVLGFEVLFR-NGNGGAEFAVLGLG--GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDAAYER 78 (112)
T ss_pred eeeCC--HHHHHHHHHhccCCEEEEe-eccCCEEEEEEecC--CceEEEecCCCCCCcccCCCeeEEEEECCCHHHHHHH
Confidence 45555 8999999999999987765 210 00 0000 0000000000 1 12257788889887665
Q ss_pred --------------hhhcCeEEEEEcCCCCEEEE
Q 046408 71 --------------RWAARRVGKVKDPCGFTWLI 90 (102)
Q Consensus 71 --------------~~wG~~~g~v~D~fGv~W~i 90 (102)
..|+.+...++||+|+.|.|
T Consensus 79 l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 79 LKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 45788999999999999975
No 41
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.31 E-value=1.8e-05 Score=49.99 Aligned_cols=84 Identities=14% Similarity=0.010 Sum_probs=51.2
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCccc-ccccccCceEEEEEeeC--Cee--eEEEEeeCcHHHHH---------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKR-KAEQELNSRLPAPFFLS--LTF--PMILLQLRMLELLL--------- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~-~~~~~~~~i~ha~l~i~--~~i--~~l~l~~~d~~~~~--------- 70 (102)
|.++| .+++.+||+ .||.++... .+... ...+. .-.+..+.-+ ..+ +++.+.++|++++.
T Consensus 8 l~v~d--~~~s~~FY~-~lG~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~Gi~ 81 (112)
T cd08344 8 LEVPD--LEVARRFYE-AFGLDVREE-GDGLELRTAGN--DHRWARLLEGARKRLAYLSFGIFEDDFAAFARHLEAAGVA 81 (112)
T ss_pred EecCC--HHHHHHHHH-HhCCcEEee-cCceEEEecCC--CceEEEeecCCCCceeeEEEEeEhhhHHHHHHHHHHcCCc
Confidence 55665 999999997 699998643 11100 00010 0111222111 222 45555678888776
Q ss_pred -----hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 71 -----RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 -----~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
.+|+.+...++||+|+.|.|....
T Consensus 82 ~~~~~~~~~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 82 LAAAPPGADPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred eecCCCcCCCCEEEEECCCCCEEEEecCC
Confidence 357777889999999999998653
No 42
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=98.30 E-value=9.1e-06 Score=53.54 Aligned_cols=86 Identities=9% Similarity=0.118 Sum_probs=51.2
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-c-ccccccCceE-EEE--Ee---eCCeeeEEEEee--CcHHHHH---
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-R-KAEQELNSRL-PAP--FF---LSLTFPMILLQL--RMLELLL--- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~-~~~~~~~~i~-ha~--l~---i~~~i~~l~l~~--~d~~~~~--- 70 (102)
.|.++| .+++.+||+++||+++... .+.. . ...+ ..+. ... .. ....+..+++.+ +|+++++
T Consensus 9 ~L~v~D--l~~s~~FY~~~lG~~~~~~-~~~~~~~~~~g--~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dv~~~~~~l 83 (139)
T PRK04101 9 CFSVSN--LEKSIEFYEKVLGAKLLVK-GRKTAYFDLNG--LWIALNEEKDIPRNEIHQSYTHIAFSIEEEDFDHWYQRL 83 (139)
T ss_pred EEEecC--HHHHHHHHHhccCCEEEee-cCeeEEEecCC--eEEEeeccCCCCCccCCCCeeEEEEEecHHHHHHHHHHH
Confidence 466777 9999999999999998644 1100 0 0001 0110 000 00 001112344444 4777766
Q ss_pred -------------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 71 -------------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 -------------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
.+|+.+...++||+|+.|.|.+..
T Consensus 84 ~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 84 KENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 457889999999999999998743
No 43
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=98.28 E-value=1.9e-05 Score=55.59 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=29.1
Q ss_pred eEEEEeeCcHHHHH------------hhh---cCeEEEEEcCCCCEEEEeccc
Q 046408 57 PMILLQLRMLELLL------------RWA---ARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 57 ~~l~l~~~d~~~~~------------~~w---G~~~g~v~D~fGv~W~i~~~~ 94 (102)
..+++.|+|+++++ .+. +.++..++||+|+.|+|....
T Consensus 123 ~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 123 GHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 45888899998877 111 356788899999999998743
No 44
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=98.26 E-value=5.2e-05 Score=47.43 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=51.5
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc---cccccccCceEEEEEeeC--CeeeEEEEeeC---cHHHHH-----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK---RKAEQELNSRLPAPFFLS--LTFPMILLQLR---MLELLL----- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~---~~~~~~~~~i~ha~l~i~--~~i~~l~l~~~---d~~~~~----- 70 (102)
.|.+++ .+++++||+++||.++... .+.. ....+. ...+ .+.-. ..+..+.+.++ +++++.
T Consensus 7 ~l~v~d--~~~~~~FY~~~lg~~~~~~-~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~h~~~~v~~~~~v~~~~~~l~~ 80 (117)
T cd07240 7 ELEVPD--LERALEFYTDVLGLTVLDR-DAGSVYLRCSEDD-HHSL--VLTEGDEPGVDALGFEVASEEDLEALAAHLEA 80 (117)
T ss_pred EEecCC--HHHHHHHHHhccCcEEEee-cCCeEEEecCCCC-cEEE--EEEeCCCCCceeEEEEcCCHHHHHHHHHHHHH
Confidence 355555 9999999999999998754 1110 001010 1111 11111 22345666665 455544
Q ss_pred -----------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 71 -----------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 -----------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
.+|+.+...+.||+|+.|.+.+.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 81 AGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred cCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 46778899999999999999865
No 45
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=98.25 E-value=2.4e-05 Score=52.24 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=51.1
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCcc--cccccccCceEEEEEee-C-CeeeEEEEeeCcHHHHH----------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETK--RKAEQELNSRLPAPFFL-S-LTFPMILLQLRMLELLL---------- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~--~~~~~~~~~i~ha~l~i-~-~~i~~l~l~~~d~~~~~---------- 70 (102)
|.+++ .++|.+||+++||+++... .... ....+. .-.+..+.- + ..+..+++.++|++++.
T Consensus 10 i~V~D--le~s~~FY~~~LG~~~~~~-~~~~~~~l~~~~--~~~~~~l~~~~~~~~~hiaf~v~d~~~l~~~~~~l~~~G 84 (144)
T cd07239 10 LNSPD--VDKTVAFYEDVLGFRVSDW-LGDQMAFLRCNS--DHHSIAIARGPHPSLNHVAFEMPSIDEVMRGIGRMIDKG 84 (144)
T ss_pred EECCC--HHHHHHHHHhcCCCEEEEe-eCCeEEEEECCC--CcceEEEccCCCCceEEEEEECCCHHHHHHHHHHHHHcC
Confidence 45666 9999999999999997643 1110 000000 000111111 1 23345777777766552
Q ss_pred ----------hhhcCeEEEEEcCCCCEEEEecccCC
Q 046408 71 ----------RWAARRVGKVKDPCGFTWLICSPVKK 96 (102)
Q Consensus 71 ----------~~wG~~~g~v~D~fGv~W~i~~~~~~ 96 (102)
.+++.++..++||+|+.+.|.+...+
T Consensus 85 i~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~ 120 (144)
T cd07239 85 IDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQ 120 (144)
T ss_pred CceeeCCcccCCCCCEEEEEECCCCcEEEeccCceE
Confidence 12334667899999999999886543
No 46
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=98.25 E-value=1.1e-05 Score=49.44 Aligned_cols=83 Identities=17% Similarity=0.012 Sum_probs=50.5
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEec-Cccc--ccccccCceEEEEEeeC--------CeeeEEEEeeCcHHHHH---
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNM-ETKR--KAEQELNSRLPAPFFLS--------LTFPMILLQLRMLELLL--- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~-~~~~--~~~~~~~~i~ha~l~i~--------~~i~~l~l~~~d~~~~~--- 70 (102)
|.+++ .+++++||+++||.+...... +... ...+. ...+|-..... .....+++.++|++++.
T Consensus 6 l~v~d--~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~l 82 (114)
T cd07245 6 LRVPD--LEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGD-GPQLHLIEEDPPDALPEGPGRDDHIAFRVDDLDAFRARL 82 (114)
T ss_pred EecCC--HHHHHHHHHHccCCcccCcCCCCCCceEEEeCC-CcEEEEEecCCCccccCCCcccceEEEEeCCHHHHHHHH
Confidence 45555 999999999999998654311 1010 00000 01222211111 11256888899998776
Q ss_pred ------------hhhcCeEEEEEcCCCCEEEE
Q 046408 71 ------------RWAARRVGKVKDPCGFTWLI 90 (102)
Q Consensus 71 ------------~~wG~~~g~v~D~fGv~W~i 90 (102)
..||.+...++||+|+.|.|
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 83 KAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 34777888999999999875
No 47
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=98.24 E-value=1.2e-05 Score=52.56 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=50.1
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-c-ccccccCceEEEEE--eeC---CeeeEEEEeeC--cHHHHH----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-R-KAEQELNSRLPAPF--FLS---LTFPMILLQLR--MLELLL---- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~-~~~~~~~~i~ha~l--~i~---~~i~~l~l~~~--d~~~~~---- 70 (102)
-|.++| .+++.+||+++||++.... -+.. . ...+. ...++..- ..+ ..+..+++.++ |+++++
T Consensus 5 ~l~V~D--l~~a~~FY~~~LG~~~~~~-~~~~~~~~~~~~-~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dld~~~~~l~ 80 (131)
T cd08363 5 TFSVSN--LDKSISFYKHVFMEKLLVL-GEKTAYFTIGGT-WLALNEEPDIPRNEIRQSYTHIAFTIEDSEFDAFYTRLK 80 (131)
T ss_pred EEEECC--HHHHHHHHHHhhCCEEecc-CCccceEeeCce-EEEEEccCCCCcCCcCccceEEEEEecHHHHHHHHHHHH
Confidence 366777 9999999999999987543 1100 0 00010 00000000 000 11224555544 577766
Q ss_pred ------------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 71 ------------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 ------------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
..|+.+...++||+|+.|.|.++.
T Consensus 81 ~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 81 EAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 235778899999999999998864
No 48
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.21 E-value=3.5e-05 Score=48.38 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.9
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
.|.+++ .+++++||+++||+++...
T Consensus 8 ~l~v~d--~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 8 VLTVAD--IEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred EEEecC--HHHHHHHHHHHhCceeecc
Confidence 456666 9999999999999998654
No 49
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.19 E-value=4.6e-05 Score=47.98 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=48.7
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEec-Ccc---c---c-cc-cccCceE-EEEEe-------eC-CeeeEEEEeeCc
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNM-ETK---R---K-AE-QELNSRL-PAPFF-------LS-LTFPMILLQLRM 65 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~-~~~---~---~-~~-~~~~~i~-ha~l~-------i~-~~i~~l~l~~~d 65 (102)
-|.+.+ .++|++||+++||++.....- +.. . . .. +....++ ..... .+ ..+..+++.++|
T Consensus 6 ~l~v~d--~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~v~~ 83 (126)
T cd08346 6 TLITRD--AQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFSVPS 83 (126)
T ss_pred EEEcCC--hhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEEcCC
Confidence 466766 899999999999999765411 110 0 0 00 0000111 10110 01 122466677664
Q ss_pred ---HHHHH--------------hhhcCeEEEEEcCCCCEEEE
Q 046408 66 ---LELLL--------------RWAARRVGKVKDPCGFTWLI 90 (102)
Q Consensus 66 ---~~~~~--------------~~wG~~~g~v~D~fGv~W~i 90 (102)
+++++ ..+|.+...++||+|+.|.|
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~ 125 (126)
T cd08346 84 EASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLEL 125 (126)
T ss_pred HHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEe
Confidence 45554 34567888999999999987
No 50
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.14 E-value=7.9e-05 Score=48.13 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=50.6
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-c-ccccccCceEEEEEeeC-CeeeEEEEeeCc---HHHHH-------
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-R-KAEQELNSRLPAPFFLS-LTFPMILLQLRM---LELLL------- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~-~~~~~~~~i~ha~l~i~-~~i~~l~l~~~d---~~~~~------- 70 (102)
.|.++| .+++.+||+++||++.... .+.. . ..++. ...+ .+.-+ .....+++.+++ +++++
T Consensus 11 ~l~v~d--~~~s~~FY~~vLG~~~~~~-~~~~~~l~~~~~-~~~i--~l~~~~~~~~~iaf~v~~~~dv~~~~~~l~~~G 84 (124)
T cd08361 11 RLGTRD--LAGATRFATDILGLQVAER-TAKATYFRSDAR-DHTL--VYIEGDPAEQASGFELRDDDALESAATELEQYG 84 (124)
T ss_pred EEeeCC--HHHHHHHHHhccCceeccC-CCCeEEEEcCCc-cEEE--EEEeCCCceEEEEEEECCHHHHHHHHHHHHHcC
Confidence 466666 9999999999999987543 1100 0 00110 0000 11112 222456777765 66554
Q ss_pred ------------hhhcCeEEEEEcCCCCEEEEecccC
Q 046408 71 ------------RWAARRVGKVKDPCGFTWLICSPVK 95 (102)
Q Consensus 71 ------------~~wG~~~g~v~D~fGv~W~i~~~~~ 95 (102)
...+.++..++||+|+.|.+.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 85 HEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred CceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 1334567799999999999986543
No 51
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.14 E-value=4.8e-05 Score=50.80 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=53.0
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCccc---ccccccCceEEEEEee---C-CeeeEEEEeeCcHH---HHH----
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKR---KAEQELNSRLPAPFFL---S-LTFPMILLQLRMLE---LLL---- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~---~~~~~~~~i~ha~l~i---~-~~i~~l~l~~~d~~---~~~---- 70 (102)
|.++| .+++++||+++||+++..+ ..... ...+ +..-| .+.+ + ..+-.+++.++|.+ +++
T Consensus 5 l~V~D--le~s~~Fy~~vLG~~~~~~-~~~~~~~l~~~~--~~~~h-~~~~~~~~~~gl~Hiaf~v~~~~~v~~~~~~l~ 78 (141)
T cd07258 5 IGSEN--FEASRDSLVEDFGFRVSDL-IEDRIVFMRCHP--NPFHH-TFAVGPASSSHFHHVNFMVTDIDDIGKALYRIK 78 (141)
T ss_pred EecCC--HHHHHHHHHhcCCCEeeee-eCCEEEEEEcCC--CCCcc-eeeeccCCCCceEEEEEECCCHHHHHHHHHHHH
Confidence 66777 8999999999999997654 11100 0001 01112 1122 2 34556777776654 333
Q ss_pred -------------hhhcCeEEEEEcCCCCEEEEecccCC
Q 046408 71 -------------RWAARRVGKVKDPCGFTWLICSPVKK 96 (102)
Q Consensus 71 -------------~~wG~~~g~v~D~fGv~W~i~~~~~~ 96 (102)
.+.+.++..++||+|+.+.|++..+.
T Consensus 79 ~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~ 117 (141)
T cd07258 79 AHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEE 117 (141)
T ss_pred HCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcce
Confidence 12445778999999999999886543
No 52
>PLN02367 lactoylglutathione lyase
Probab=98.14 E-value=4.6e-05 Score=55.56 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=29.5
Q ss_pred eEEEEeeCcHHHHH----------------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 57 PMILLQLRMLELLL----------------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 57 ~~l~l~~~d~~~~~----------------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
..|++.|+|+++++ ..| .+.+.++||+|+.|+|.+..
T Consensus 171 ~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~-~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 171 GHIGITVDDVYKACERFEELGVEFVKKPNDGKM-KGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred eEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc-eEEEEEECCCCCEEEEEecc
Confidence 56888999999887 222 46788999999999998754
No 53
>PRK06724 hypothetical protein; Provisional
Probab=98.14 E-value=5.2e-05 Score=49.92 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=47.3
Q ss_pred EEEeCCCCHHHHHHHHHHhh---CCeEEEEecCcccccccccCceEEE---EEeeCCeeeEEEEee---CcHHHHH----
Q 046408 4 QLLVEASKVTDAVQCYKTAF---GAVEINRNMETKRKAEQELNSRLPA---PFFLSLTFPMILLQL---RMLELLL---- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~f---G~~~~~~~~~~~~~~~~~~~~i~ha---~l~i~~~i~~l~l~~---~d~~~~~---- 70 (102)
-|.++| .+++++||+++| |.++... .... ++.....+.. ++........+++.+ +++++++
T Consensus 12 ~l~V~D--le~s~~FY~~vlg~lg~~~~~~-~~~~---~g~~~l~l~~~~~~~~~~~g~~h~af~v~~~~dvd~~~~~l~ 85 (128)
T PRK06724 12 EFWVAN--LEESISFYDMLFSIIGWRKLNE-VAYS---TGESEIYFKEVDEEIVRTLGPRHICYQAINRKVVDEVAEFLS 85 (128)
T ss_pred EEEeCC--HHHHHHHHHHHHhhCCcEEeee-Eeee---CCCeeEEEecCCccccCCCCceeEEEecCChHHHHHHHHHHH
Confidence 377877 999999999977 5554321 1100 1100000100 010011113455554 6777666
Q ss_pred ------------h---hhcCeEEEEEcCCCCEEEEecc
Q 046408 71 ------------R---WAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 ------------~---~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
. .||.+...++||+|+.|.|.+.
T Consensus 86 ~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 86 STKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred HCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 1 2676778899999999999866
No 54
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=98.11 E-value=7e-05 Score=47.69 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=50.5
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc----ccccccCceEEEEEeeC--CeeeEEEEeeC---cHHHHH----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETKR----KAEQELNSRLPAPFFLS--LTFPMILLQLR---MLELLL---- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~----~~~~~~~~i~ha~l~i~--~~i~~l~l~~~---d~~~~~---- 70 (102)
.|.++| .++|.+||+++||++.... .+... ..++. ....-.+..+ ..+..+++.++ |+++++
T Consensus 9 ~l~v~D--l~~s~~FY~~~lG~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~hiaf~v~~~~dv~~~~~~l~ 83 (122)
T cd07265 9 QLRVLD--LEEAIKHYREVLGLDEVGR-DDQGRVYLKAWDEF--DHHSIVLREADTAGLDFMGFKVLDDADLEKLEARLQ 83 (122)
T ss_pred EEEeCC--HHHHHHHHHhccCCEeeee-cCCceEEEEccCCC--cccEEEeccCCCCCeeEEEEEeCCHHHHHHHHHHHH
Confidence 567777 9999999999999987654 21110 00100 0001111111 22245666665 566554
Q ss_pred ------------hhhc-CeEEEEEcCCCCEEEEeccc
Q 046408 71 ------------RWAA-RRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 ------------~~wG-~~~g~v~D~fGv~W~i~~~~ 94 (102)
..+| .+...++||+|+.|.|.+..
T Consensus 84 ~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 84 AYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred HCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 1222 36789999999999998754
No 55
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.11 E-value=0.00014 Score=46.46 Aligned_cols=86 Identities=9% Similarity=-0.011 Sum_probs=50.4
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc---ccccccCceEEEEEeeC--CeeeEEEEeeC---cHHHHH----
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR---KAEQELNSRLPAPFFLS--LTFPMILLQLR---MLELLL---- 70 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~---~~~~~~~~i~ha~l~i~--~~i~~l~l~~~---d~~~~~---- 70 (102)
..|.++| .++|.+||+++||++.... .+... ..++ .-.+-.|.-+ ..+..+++.++ |+++++
T Consensus 6 v~l~v~D--l~~s~~FY~~~LG~~~~~~-~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~f~v~~~~dl~~~~~~l~ 79 (120)
T cd07252 6 LGVESSD--LDAWRRFATDVLGLQVGDR-PEDGALYLRMDD---RAWRIAVHPGEADDLAYAGWEVADEAALDALAARLR 79 (120)
T ss_pred EEEEeCC--HHHHHHHHHhccCceeccC-CCCCeEEEEccC---CceEEEEEeCCCCceeEEEEEECCHHHHHHHHHHHH
Confidence 3577777 8999999999999987543 11110 0011 1111122211 22345556665 455554
Q ss_pred --------h------hhc-CeEEEEEcCCCCEEEEeccc
Q 046408 71 --------R------WAA-RRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 --------~------~wG-~~~g~v~D~fGv~W~i~~~~ 94 (102)
. .+| .+...++||+|+.|.+....
T Consensus 80 ~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 80 AAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 1 123 26789999999999998654
No 56
>PLN02300 lactoylglutathione lyase
Probab=98.10 E-value=8e-05 Score=54.87 Aligned_cols=89 Identities=11% Similarity=0.136 Sum_probs=54.5
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEe-cCccc-----ccccccCceEEEEEee-----------CCeeeEEEEeeCcH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRN-METKR-----KAEQELNSRLPAPFFL-----------SLTFPMILLQLRML 66 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~-----~~~~~~~~i~ha~l~i-----------~~~i~~l~l~~~d~ 66 (102)
-|.++| .+++++||+++||+++.... .+... ...+. + -.|..+.+ +..+..+++.++|+
T Consensus 29 ~l~V~D--le~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~-~~~~~lel~~~~~~~~~~~~~g~~hia~~v~dv 104 (286)
T PLN02300 29 VYRVGD--LDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-E-DSNFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 104 (286)
T ss_pred EEEeCC--HHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCC-C-CCceEEEEeccCCCCccccCCCccEEEEEeCCH
Confidence 467777 89999999999999986531 11110 00000 0 01111111 11124577889999
Q ss_pred HHHH----------------hhhc-CeEEEEEcCCCCEEEEecccCC
Q 046408 67 ELLL----------------RWAA-RRVGKVKDPCGFTWLICSPVKK 96 (102)
Q Consensus 67 ~~~~----------------~~wG-~~~g~v~D~fGv~W~i~~~~~~ 96 (102)
+++. .++| .++..++||+|+.+.|.+....
T Consensus 105 d~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~ 151 (286)
T PLN02300 105 AKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPT 151 (286)
T ss_pred HHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Confidence 8876 3344 4567899999999999886543
No 57
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.10 E-value=0.00013 Score=46.29 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=50.7
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc--ccccccCceEEEEEeeC--C---eeeEEEEeeCc---HHHHH-
Q 046408 2 KPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKR--KAEQELNSRLPAPFFLS--L---TFPMILLQLRM---LELLL- 70 (102)
Q Consensus 2 ~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~--~~~~~~~~i~ha~l~i~--~---~i~~l~l~~~d---~~~~~- 70 (102)
.+.|.+++ .++|.+||+++||.+.... .+... ...+ .-.+-.+... . .+..+++.+++ +++++
T Consensus 4 hv~l~v~d--~~~a~~FY~~~lG~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~f~v~~~~dl~~~~~ 77 (120)
T cd07254 4 HVALNVDD--LEASIAFYSKLFGVEPTKV-RDDYAKFLLED---PRLNFVLNERPGAPGGGLNHLGVQVDSAEEVAEAKA 77 (120)
T ss_pred EEEEEeCC--HHHHHHHHHHHhCCeEecc-cCCeeEEEecC---CceEEEEecCCCCCCCCeeEEEEEeCCHHHHHHHHH
Confidence 35678877 9999999999999986543 21100 0001 0111111111 1 22456666666 45554
Q ss_pred --------------hhh--c-CeEEEEEcCCCCEEEEeccc
Q 046408 71 --------------RWA--A-RRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 --------------~~w--G-~~~g~v~D~fGv~W~i~~~~ 94 (102)
..+ + .+...++||+|+.|.|.+..
T Consensus 78 ~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 78 RAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 111 1 35688999999999998753
No 58
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.09 E-value=5.9e-05 Score=48.21 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=48.4
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-cccccccCceEEEEEeeC------CeeeEEEEee--CcHHHHH----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-RKAEQELNSRLPAPFFLS------LTFPMILLQL--RMLELLL---- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~~~~~~~~~i~ha~l~i~------~~i~~l~l~~--~d~~~~~---- 70 (102)
.|.+++ .+++.+||+++||.+.... .+.. ....+ ...+ .+... ..+..+++.+ +|+++++
T Consensus 6 ~l~v~d--~~~~~~FY~~vLG~~~~~~-~~~~~~~~~~---~~~~-~l~~~~~~~~~~~~~hi~f~v~~~dl~~~~~~l~ 78 (121)
T cd07244 6 TLAVSD--LERSVAFYVDLLGFKLHVR-WDKGAYLEAG---DLWL-CLSVDANVGPAKDYTHYAFSVSEEDFASLKEKLR 78 (121)
T ss_pred EEEECC--HHHHHHHHHHhcCCEEEEe-cCCceEEecC---CEEE-EEecCCCCCCCCCeeeEEEEeCHHHHHHHHHHHH
Confidence 456666 9999999999999987653 2111 00001 0111 11111 1123344444 5777666
Q ss_pred ----h-----hhcCeEEEEEcCCCCEEEEecc
Q 046408 71 ----R-----WAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 ----~-----~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
+ ....+...++||+|+.|.|.+.
T Consensus 79 ~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 79 QAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 1 1223678999999999999864
No 59
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.08 E-value=9.9e-05 Score=46.76 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=50.5
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc---cccccccCceEE-EEEeeC--CeeeEEEEee---CcHHHHH----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK---RKAEQELNSRLP-APFFLS--LTFPMILLQL---RMLELLL---- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~---~~~~~~~~~i~h-a~l~i~--~~i~~l~l~~---~d~~~~~---- 70 (102)
.|.+++ .+++.+||+++||+++... .+.. ...+. ...| -.+.-+ ..+..+++.+ +|+++++
T Consensus 9 ~l~v~d--~~~~~~Fy~~~lG~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~hi~~~v~~~~dv~~~~~~l~ 82 (121)
T cd07266 9 ELRVTD--LEKSREFYVDVLGLVETEE-DDDRIYLRGLEE---FIHHSLVLTKAPVAGLGHIAFRVRSEEDLDKAEAFFQ 82 (121)
T ss_pred EEEcCC--HHHHHHHHHhccCCEEecc-CCCeEEEEecCC---CceEEEEEeeCCCCceeEEEEECCCHHHHHHHHHHHH
Confidence 466766 9999999999999997643 1100 00000 0111 111111 2234455555 4666655
Q ss_pred ------------hh-hcCeEEEEEcCCCCEEEEecccC
Q 046408 71 ------------RW-AARRVGKVKDPCGFTWLICSPVK 95 (102)
Q Consensus 71 ------------~~-wG~~~g~v~D~fGv~W~i~~~~~ 95 (102)
.. ++.+...+.||+|+.|.+.++.+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~~ 120 (121)
T cd07266 83 ELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEMD 120 (121)
T ss_pred HcCCCcccccCCcCCCCccEEEEECCCCCEEEEEeccc
Confidence 12 33578899999999999987643
No 60
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.03 E-value=0.00011 Score=49.47 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=51.4
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCc-ccc--------cccccCceEEEEEee--C--CeeeEEEEeeCcHHHHH-
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMET-KRK--------AEQELNSRLPAPFFL--S--LTFPMILLQLRMLELLL- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~-~~~--------~~~~~~~i~ha~l~i--~--~~i~~l~l~~~d~~~~~- 70 (102)
|.++| .++|++||+++||+++......+ ... ..+. ..+-|..+.+ + ..+..+++.++|++++.
T Consensus 7 l~V~D--le~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~g~~Hiaf~v~die~~~~ 83 (153)
T cd07257 7 LEVPD--FAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGE-EYVDHHTLALAQGPESGVHHAAFEVHDFDAQGL 83 (153)
T ss_pred EecCC--HHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCC-CcccchHHHHhcCCCCceeEEEEEcCCHHHHHH
Confidence 56777 99999999999999875431111 000 0000 0011111111 0 22356888899888763
Q ss_pred -----------hhhc--------CeEEEEEcCCCCEEEEeccc
Q 046408 71 -----------RWAA--------RRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 -----------~~wG--------~~~g~v~D~fGv~W~i~~~~ 94 (102)
..|| ..+..++||.|+.|.|....
T Consensus 84 ~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 84 GHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred HHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 2243 34668899999999998754
No 61
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=98.02 E-value=0.0002 Score=47.72 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=50.8
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCcccc-ccc---ccCceEEEEEee--C-CeeeEEEEeeCcHHHHH-------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKRK-AEQ---ELNSRLPAPFFL--S-LTFPMILLQLRMLELLL------- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~-~~~---~~~~i~ha~l~i--~-~~i~~l~l~~~d~~~~~------- 70 (102)
|.+.| .+++++||+++||+++..+...++.. ... ..+...|..... . ..+..+++.++|.+++.
T Consensus 12 l~v~D--le~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~~~~~~~~Hiaf~v~d~~~l~~~~~~l~ 89 (143)
T cd07243 12 LTGED--IAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKPHDIAFVGGPDGKLHHFSFFLESWEDVLKAGDIIS 89 (143)
T ss_pred EecCC--HHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCcceEEEecCCCCCceEEEEEcCCHHHHHHHHHHHH
Confidence 56666 99999999999999876541111100 000 000011221111 1 22346778888877642
Q ss_pred --------h----h-hcCeEEEEEcCCCCEEEEecc
Q 046408 71 --------R----W-AARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 --------~----~-wG~~~g~v~D~fGv~W~i~~~ 93 (102)
. . ++.+...+.||+|+.+.|.+.
T Consensus 90 ~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 90 MNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred HcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 1 1 334678999999999999764
No 62
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.99 E-value=0.00014 Score=46.17 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=46.8
Q ss_pred EEEeCCCCHHHHHHHHHHhh---CCeEEEEecCccc----ccccccCceEEEEEee-----C-CeeeEEEEeeCc---HH
Q 046408 4 QLLVEASKVTDAVQCYKTAF---GAVEINRNMETKR----KAEQELNSRLPAPFFL-----S-LTFPMILLQLRM---LE 67 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~f---G~~~~~~~~~~~~----~~~~~~~~i~ha~l~i-----~-~~i~~l~l~~~d---~~ 67 (102)
.|.++| .++|++||+++| |.++... ..+.. ..++ ...++-.... . .....+++.+++ ++
T Consensus 5 ~l~v~d--~~~s~~FY~~~f~~lg~~~~~~-~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~hi~f~v~~~~~v~ 79 (123)
T cd07262 5 TLGVND--LERARAFYDAVLAPLGIKRVME-DGPGAVGYGKGGG--GPDFWVTKPFDGEPATAGNGTHVAFAAPSREAVD 79 (123)
T ss_pred EEecCc--HHHHHHHHHHHHhhcCceEEee-cCCceeEeccCCC--CceEEEeccccCCCCCCCCceEEEEECCCHHHHH
Confidence 356666 999999999995 7776543 11110 0111 1111111111 1 112466777765 44
Q ss_pred HHH----------------hhh-cC--eEEEEEcCCCCEEEEec
Q 046408 68 LLL----------------RWA-AR--RVGKVKDPCGFTWLICS 92 (102)
Q Consensus 68 ~~~----------------~~w-G~--~~g~v~D~fGv~W~i~~ 92 (102)
+++ .+| |. +...++||+|+.|.|.+
T Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~~ 123 (123)
T cd07262 80 AFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAVC 123 (123)
T ss_pred HHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEeC
Confidence 443 233 43 34789999999999863
No 63
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=97.98 E-value=0.00022 Score=48.30 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=47.9
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccccCceE-----EEEEe--eC--CeeeEEEEeeCc---HHHHH--
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQELNSRL-----PAPFF--LS--LTFPMILLQLRM---LELLL-- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~i~-----ha~l~--i~--~~i~~l~l~~~d---~~~~~-- 70 (102)
|.++| .++|++||+++||++........+ .......+ |..+. -+ ..+..+++.++| +++++
T Consensus 9 l~V~D--l~~s~~FY~~vLGl~~~~~~~~~~---~~~~~~~l~~~~~~~~i~l~~~~~~~~~Hiaf~v~~~~~v~~~~~~ 83 (161)
T cd07256 9 LRVPD--VDAGLAYYRDELGFRVSEYTEDDD---GTTWAAWLHRKGGVHDTALTGGNGPRLHHVAFWVPEPHNIIRTCDL 83 (161)
T ss_pred EecCC--HHHHHHHHHhccCCEEEEEeccCC---CcEEEEEEecCCCcceEEEecCCCCceeEEEEEcCCHHHHHHHHHH
Confidence 56766 999999999999998764311111 00000011 11111 11 222466777765 44433
Q ss_pred ------h-----------hhcCeEEEEEcCCCCEEEEecc
Q 046408 71 ------R-----------WAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 ------~-----------~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
. .++.++..++||+|+.|.|.+.
T Consensus 84 L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 84 LAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred HHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 1 1334567899999999999753
No 64
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=97.97 E-value=0.00022 Score=48.68 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=49.2
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccc---cCceEEEEEee-----C--CeeeEEEEeeCcHH---HHH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQE---LNSRLPAPFFL-----S--LTFPMILLQLRMLE---LLL 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~---~~~i~ha~l~i-----~--~~i~~l~l~~~d~~---~~~ 70 (102)
-|.++| .++|++||+++||++............... .+...| ++.+ + +.+..+++.++|.+ +++
T Consensus 11 ~l~V~D--le~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~l~~~~~~~~~~~~hiaf~v~~~~~l~~~~ 87 (166)
T cd09014 11 NLLASD--VDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVH-DVAYTRDPAGARGRLHHLAYALDTREDVLRAA 87 (166)
T ss_pred EEEcCC--HHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCce-eEEEecCCCCCCCCceEEEEECCCHHHHHHHH
Confidence 367777 899999999999998764411110000000 000001 1111 1 22356777777654 443
Q ss_pred ----------------hhhcCe-EEEEEcCCCCEEEEecc
Q 046408 71 ----------------RWAARR-VGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 ----------------~~wG~~-~g~v~D~fGv~W~i~~~ 93 (102)
..++.. +..++||+|+.|+|...
T Consensus 88 ~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 88 DIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred HHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 223232 46799999999999876
No 65
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=97.97 E-value=0.0003 Score=44.77 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=48.7
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc--ccccccCceEEEEEeeC--CeeeEEEEeeC---cHHHHH------
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETKR--KAEQELNSRLPAPFFLS--LTFPMILLQLR---MLELLL------ 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~--~~~~~~~~i~ha~l~i~--~~i~~l~l~~~---d~~~~~------ 70 (102)
.|.+++ .++|.+||+++||++.... .+... ...+. .......+... ..+..+++.++ +++++.
T Consensus 11 ~l~v~d--l~~a~~FY~~~lG~~~~~~-~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~h~af~v~~~~~v~~~~~~l~~~ 86 (121)
T cd09013 11 ELLTPK--PEESLWFFTDVLGLEETGR-EGQSVYLRAWGD-YEHHSLKLTESPEAGLGHIAWRASSPEALERRVAALEAS 86 (121)
T ss_pred EEEeCC--HHHHHHHHHhCcCCEEEee-cCCeEEEEeccC-CCccEEEEeeCCCCceEEEEEEcCCHHHHHHHHHHHHHc
Confidence 466766 9999999999999987654 11000 00010 00000112111 22345666665 444444
Q ss_pred ---------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 71 ---------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 ---------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
.+.+.+...++||+|+.+.+.+..
T Consensus 87 G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 87 GLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 112234568999999999998754
No 66
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=97.90 E-value=0.00036 Score=45.52 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=50.6
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCccc---ccccccCceEEEEEeeC----CeeeEEEEeeCcHHHHH-------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKR---KAEQELNSRLPAPFFLS----LTFPMILLQLRMLELLL------- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~---~~~~~~~~i~ha~l~i~----~~i~~l~l~~~d~~~~~------- 70 (102)
|.+++ .+++.+||+++||.++... ..... ...+. +......|.-. ..+..+++.++|.+++.
T Consensus 9 l~v~d--l~~s~~FY~~vlGl~~~~~-~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~g~~hiaf~v~d~~~~~~~~~~l~ 84 (134)
T cd08360 9 LFVPD--VEAAEAFYRDRLGFRVSDR-FKGRGAFLRAAGG-GDHHNLFLIKTPAPMAGFHHAAFEVGDIDEVMLGGNHML 84 (134)
T ss_pred EEcCC--HHHHHHHHHHhcCCEEEEE-ecCcEEEEECCCC-CCCcEEEEecCCCCCCcceEEEEEeCCHHHHHHHHHHHH
Confidence 56666 9999999999999987654 11100 00000 00001112111 22356788888777543
Q ss_pred ------------hhhcC-eEEEEEcCCCCEEEEecccC
Q 046408 71 ------------RWAAR-RVGKVKDPCGFTWLICSPVK 95 (102)
Q Consensus 71 ------------~~wG~-~~g~v~D~fGv~W~i~~~~~ 95 (102)
.+++. ++..++||+|+.+.|.+...
T Consensus 85 ~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 85 RAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred HcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 12232 34689999999999987543
No 67
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=97.87 E-value=0.00038 Score=46.78 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=50.1
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEe-cCcccccccccC-ceEEE-------EEeeC---CeeeEEEEeeCcHHH---H
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRN-METKRKAEQELN-SRLPA-------PFFLS---LTFPMILLQLRMLEL---L 69 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~~~~~~~~-~i~ha-------~l~i~---~~i~~l~l~~~d~~~---~ 69 (102)
|.+++ .+++++||+++||++..... .+.+ .++... ..++. .+... ..+..+++.++|.++ +
T Consensus 15 l~v~D--l~~a~~FY~~~LGl~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~~~~g~~Hiaf~V~d~~~l~~~ 90 (154)
T cd07237 15 LATPD--PDEAHAFYRDVLGFRLSDEIDIPLP--PGPTARVTFLHCNGRHHSLALAEGPGPKRIHHLMLEVTSLDDVGRA 90 (154)
T ss_pred EEeCC--HHHHHHHHHHccCCEEEEEEcccCC--CCCcceEEEEEeCCCCCCEEEEcCCCCceeEEEEEEcCCHHHHHHH
Confidence 56766 99999999999999876431 1100 000000 01111 11111 122467788877654 3
Q ss_pred H----------------hh-hcCeEEEEEcCCCCEEEEeccc
Q 046408 70 L----------------RW-AARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 70 ~----------------~~-wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
+ .+ .+.+...++||+|+.++|.+..
T Consensus 91 ~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 91 YDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred HHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 3 12 3457778999999999998754
No 68
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=97.82 E-value=0.00071 Score=44.06 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=49.7
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccccCceE-----EEEEeeCC-----eeeEEEEeeC--cHHHHH--
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQELNSRL-----PAPFFLSL-----TFPMILLQLR--MLELLL-- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~i~-----ha~l~i~~-----~i~~l~l~~~--d~~~~~-- 70 (102)
|.++| .+++++||+++||.++... ........+. .... +-.+.-.. .+..+++.++ ++++++
T Consensus 10 l~V~d--l~~s~~FY~~~lG~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~l~~~~~~~~~~~~Hiaf~v~~~~ld~~~~~ 85 (131)
T cd08364 10 LIVKD--LNKTTAFLQNIFNAREVYS-SGDKTFSLSK-EKFFLIGGLWIAIMEGDSLQERTYNHIAFKISDSDVDEYTER 85 (131)
T ss_pred EEeCC--HHHHHHHHHHHhCCeeEEe-cccccccccc-eeEEEcCCeEEEEecCCCCCCCCceEEEEEcCHHHHHHHHHH
Confidence 66776 8999999999999987654 1110000000 0000 01111111 1234556665 566665
Q ss_pred -------------hhhc-CeEEEEEcCCCCEEEEeccc
Q 046408 71 -------------RWAA-RRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 -------------~~wG-~~~g~v~D~fGv~W~i~~~~ 94 (102)
..+| .+...++||+|+.|.|.+..
T Consensus 86 l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 86 IKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred HHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCC
Confidence 2343 57899999999999998753
No 69
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=97.81 E-value=0.0012 Score=42.53 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=51.5
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCc-c--c-ccccccCceEEEEEe------eC-CeeeEEEEeeCcHHH---H
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMET-K--R-KAEQELNSRLPAPFF------LS-LTFPMILLQLRMLEL---L 69 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~-~--~-~~~~~~~~i~ha~l~------i~-~~i~~l~l~~~d~~~---~ 69 (102)
.|.++| .+++++||+++||.++... .+. . . .........+.-.-. -+ ..+..+++.++|.+. +
T Consensus 6 ~l~v~D--~~~s~~FY~~~lG~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~~~v~~~ 82 (134)
T cd08348 6 VLYVRD--LEAMVRFYRDVLGFTVTDR-GPLGGLVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDSLDDLRDL 82 (134)
T ss_pred EEEecC--HHHHHHHHHHhcCCEEEee-ccCCcEEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCCHHHHHHH
Confidence 456666 8999999999999987654 221 1 0 000000011111000 01 122457777776553 3
Q ss_pred H---------------hhhcCeEEEEEcCCCCEEEEecccCCC
Q 046408 70 L---------------RWAARRVGKVKDPCGFTWLICSPVKKG 97 (102)
Q Consensus 70 ~---------------~~wG~~~g~v~D~fGv~W~i~~~~~~~ 97 (102)
+ ..+ .+...++||+|+.|.|.+..+..
T Consensus 83 ~~~l~~~G~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~~~~ 124 (134)
T cd08348 83 YERLRAAGITPVWPVDHGN-AWSIYFRDPDGNRLELFVDTPWY 124 (134)
T ss_pred HHHHHHCCCCccccCCCCc-eeEEEEECCCCCEEEEEEcCCCC
Confidence 3 222 36678999999999999876543
No 70
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=97.79 E-value=0.00049 Score=46.67 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=51.2
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-c-cccc-ccCceEEEEEe-------eC-CeeeEEEEeeCc---HHHH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-R-KAEQ-ELNSRLPAPFF-------LS-LTFPMILLQLRM---LELL 69 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~-~~~~-~~~~i~ha~l~-------i~-~~i~~l~l~~~d---~~~~ 69 (102)
-|.++| .+++.+||+++||+++... .+.. . ...+ ..+..++-.-. .+ ..+..+++.++| ++++
T Consensus 6 ~i~V~D--le~s~~FY~~~LG~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d~~dvd~~ 82 (157)
T cd08347 6 TLTVRD--PEATAAFLTDVLGFREVGE-EGDRVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPDDEELEAW 82 (157)
T ss_pred EEEeCC--HHHHHHHHHHhcCCEEEee-eCCEEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEEEECCCHHHHHHH
Confidence 366777 9999999999999998654 2110 0 0000 00112211100 01 223467778877 5665
Q ss_pred H---------------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 70 L---------------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 70 ~---------------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
+ ..|+ +...++||+|+.|.|.+..
T Consensus 83 ~~~L~~~Gv~~~~~~~~~~~-~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 83 KERLEALGLPVSGIVDRFYF-KSLYFREPGGILFEIATDG 121 (157)
T ss_pred HHHHHHCCCCcccccccccE-EEEEEECCCCcEEEEEECC
Confidence 5 2222 4568999999999998753
No 71
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=97.78 E-value=0.00053 Score=50.10 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=53.5
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-cccccccCceEE-EEEeeC--CeeeEEEEeeC---cHHHHH-----
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINRNMETK-RKAEQELNSRLP-APFFLS--LTFPMILLQLR---MLELLL----- 70 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~~~~~~~~~i~h-a~l~i~--~~i~~l~l~~~---d~~~~~----- 70 (102)
..|.++| .+++.+||+++||+++... .+.. ...... ....| -.+..+ ..+..+++.++ |++++.
T Consensus 8 v~l~v~D--l~~s~~FY~~vLGl~~~~~-~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~hiaf~v~~~~dl~~~~~~l~~ 83 (294)
T TIGR02295 8 VELRVTD--LDKSREFYVDLLGFRETES-DKEYIYLRGIE-EFQHHSLVLTKAPSAALSYIGFRVSKEEDLDKAADFFQK 83 (294)
T ss_pred EEEEeCC--HHHHHHHHHHccCCEEEEe-cCCeEEEeccC-cCCceEEEeeeCCCcCccEEEEEeCCHHHHHHHHHHHHh
Confidence 4577877 9999999999999998654 1110 000000 00011 112211 22345666765 555554
Q ss_pred ---------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 71 ---------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 ---------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
.+++.+...++||+|+.|.|.+..
T Consensus 84 ~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 84 LGHPVRLVRDGGQPEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred cCCcEEeecCCCCceEEEEECCCCCEEEEEEch
Confidence 346678899999999999998744
No 72
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=97.75 E-value=0.00062 Score=45.44 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=51.8
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEE-ecCccc----cccc-c-cCceEEEEEeeC-CeeeEEEEeeCcHHHHH------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINR-NMETKR----KAEQ-E-LNSRLPAPFFLS-LTFPMILLQLRMLELLL------ 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~-~~~~~~----~~~~-~-~~~i~ha~l~i~-~~i~~l~l~~~d~~~~~------ 70 (102)
|.+.| .++|++||+++||-+.... ++.+.. ..++ . -.-+++..-... ..-..+.+.++|+++..
T Consensus 15 i~~~D--~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~~~p~~~~~~iy~~v~did~~l~rv~~~ 92 (127)
T COG3324 15 LPVSD--LERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPGSPPGGGGWVIYFAVDDIDATLERVVAA 92 (127)
T ss_pred eecCC--HHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCCcCCCCCCCEEEEEecCChHHHHHHHHhc
Confidence 34555 8999999999999886643 111000 0010 0 001111111111 11156777789998765
Q ss_pred ----------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 71 ----------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 ----------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
-+=+.|++.++||-|+...|.++.
T Consensus 93 GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 93 GGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 332569999999999999987653
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=97.72 E-value=0.00076 Score=49.37 Aligned_cols=85 Identities=16% Similarity=0.084 Sum_probs=52.6
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEe-cCcccccccc--cCceE-----EEEEee----C-CeeeEEEEeeCcHHHH--
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRN-METKRKAEQE--LNSRL-----PAPFFL----S-LTFPMILLQLRMLELL-- 69 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~~~~~~--~~~i~-----ha~l~i----~-~~i~~l~l~~~d~~~~-- 69 (102)
|.+++ .+++++||+++||+++.... .+.+ ++. .-..+ |..+.+ + ..+-.+++.++|.+++
T Consensus 148 l~v~D--le~s~~FY~~~LGf~~~~~~~~~~~---~g~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Hiaf~v~d~~~v~~ 222 (286)
T TIGR03213 148 LRVPD--VDAALAFYTEVLGFQLSDVIDLPAG---PGVTVRPYFLHCNERHHSLAFAAGPSEKRLNHLMLEVDTLDDVGL 222 (286)
T ss_pred EEcCC--HHHHHHHHHHccCCeEEEeEcccCC---CCCcceEEEEEECCCcceEEEecCCCCCceEEEEEEcCCHHHHHH
Confidence 56766 99999999999999976541 1111 010 00011 111211 1 2234678888887764
Q ss_pred -H----------------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 70 -L----------------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 70 -~----------------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
+ .+++.++..++||+|+.|.+++..
T Consensus 223 ~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 223 ALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred HHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 2 235567888999999999998754
No 74
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.70 E-value=0.0018 Score=40.96 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=49.0
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-cccccccCceEEEEEeeC----------CeeeEEEEeeC---cHHHH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-RKAEQELNSRLPAPFFLS----------LTFPMILLQLR---MLELL 69 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~~~~~~~~~i~ha~l~i~----------~~i~~l~l~~~---d~~~~ 69 (102)
.|.+++ .+++.+||+++||+++... .+.. ....+ +...+-.|.-. ..+..+++.++ +++++
T Consensus 7 ~l~v~d--~~~~~~Fy~~~lG~~~~~~-~~~~~~l~~~--~~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~~~~v~~~ 81 (125)
T cd07255 7 TLRVAD--LERSLAFYQDVLGLEVLER-TDSTAVLGTG--GKRPLLVLEEDPDAPPAPPGATGLYHFAILLPSRADLAAA 81 (125)
T ss_pred EEEECC--HHHHHHHHHhccCcEEEEc-CCCEEEEecC--CCeEEEEEEeCCCCCcccCCCCcEEEEEEECCCHHHHHHH
Confidence 366766 8999999999999998754 1100 00001 00111112111 11245566665 45555
Q ss_pred H---------------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 70 L---------------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 70 ~---------------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
+ ..|+ +...++||+|+.|.|.+..
T Consensus 82 ~~~l~~~g~~~~~~~~~~~~-~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 82 LRRLIELGIPLVGASDHLVS-EALYLSDPEGNGIEIYADR 120 (125)
T ss_pred HHHHHHcCCceeccccccce-eEEEEECCCCCEEEEEEec
Confidence 5 2333 4567999999999998754
No 75
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=97.67 E-value=0.00083 Score=42.33 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
.|.+.+ .+++.+||+++||++....
T Consensus 5 ~l~v~d--~~~~~~fy~~~lG~~~~~~ 29 (128)
T cd07249 5 GIAVPD--LEAAIKFYRDVLGVGPWEE 29 (128)
T ss_pred EEEeCC--HHHHHHHHHHhhCCCCccc
Confidence 466766 9999999999999998654
No 76
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=97.62 E-value=0.0011 Score=48.58 Aligned_cols=84 Identities=12% Similarity=0.034 Sum_probs=50.7
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCccc---ccccccCceEEEEEee-C-CeeeEEEEeeCc---HHHHH-----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETKR---KAEQELNSRLPAPFFL-S-LTFPMILLQLRM---LELLL----- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~---~~~~~~~~i~ha~l~i-~-~~i~~l~l~~~d---~~~~~----- 70 (102)
.|.+.| .++|++||+++||+++... ..... ..+. .-.+-.+.- + ..+..+.+.+++ ++++.
T Consensus 8 ~l~V~D--l~~s~~FY~~~LGl~~~~~-~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~f~V~~~~~l~~~~~~L~~ 81 (286)
T TIGR03213 8 GIGVSD--VDAWREFATEVLGMMVASE-GENDALYLRLDS---RAHRIAVHPGESDDLAYAGWEVADEAGLDQVKEKLEK 81 (286)
T ss_pred EEEeCC--HHHHHHHHHhccCcccccC-CCCceEEEEcCC---CceEEEEEECCcCCeeeEeeeeCCHHHHHHHHHHHHH
Confidence 577877 9999999999999987543 11100 0010 000111211 1 233457777777 44443
Q ss_pred --------------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 71 --------------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 --------------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
..++.+...++||+|+.|.|...
T Consensus 82 ~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~ 118 (286)
T TIGR03213 82 AGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYG 118 (286)
T ss_pred cCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEc
Confidence 12456789999999999999763
No 77
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=97.56 E-value=0.0018 Score=47.69 Aligned_cols=84 Identities=14% Similarity=0.057 Sum_probs=49.0
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEe-cCcccccccccCceEEE-----EE---ee-C-CeeeEEEEeeCcHHHH---H
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRN-METKRKAEQELNSRLPA-----PF---FL-S-LTFPMILLQLRMLELL---L 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~-~~~~~~~~~~~~~i~ha-----~l---~i-~-~~i~~l~l~~~d~~~~---~ 70 (102)
|.+++ .+++++||+++||++..... .+... .. ....++. .+ +. + +.+..+++.++|.+++ +
T Consensus 151 l~V~D--l~~s~~FY~~~LG~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~g~~~Hiaf~v~~~~~v~~~~ 225 (303)
T TIGR03211 151 LYGED--VAENTRFFTEVLGFRLTEQVVLGDGK--EQ-AAAWLSVSNKAHDIAFVGDPEPGKLHHVSFFLDSWEDVLKAA 225 (303)
T ss_pred EEeCC--HHHHHHHHHHhcCCEEEeeEEcCCCc--EE-EEEEEEcCCCCcccceecCCCCCceEEEEEEcCCHHHHHHHH
Confidence 66777 89999999999999975431 11110 00 0000100 11 11 1 2245688888865543 2
Q ss_pred --------hh-h-----c---CeEEEEEcCCCCEEEEecc
Q 046408 71 --------RW-A-----A---RRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 --------~~-w-----G---~~~g~v~D~fGv~W~i~~~ 93 (102)
+. | | .++..++||+|+.|.|.+.
T Consensus 226 ~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 226 DVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred HHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 11 2 2 3578899999999999743
No 78
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.51 E-value=0.0025 Score=42.26 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
-|.|.| .+++++||+++||.++..+
T Consensus 7 ~irV~D--lerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 7 VFKVGN--RNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred EEEeCC--HHHHHHHHHHhcCCEEEee
Confidence 477877 8999999999999998654
No 79
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.45 E-value=0.0052 Score=39.02 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=48.8
Q ss_pred EEEeCCCCHHHHHHHHHHhh---CCeEEEEecCccc--c-cccccCceEEEEEeeC------------CeeeEEEEeeC-
Q 046408 4 QLLVEASKVTDAVQCYKTAF---GAVEINRNMETKR--K-AEQELNSRLPAPFFLS------------LTFPMILLQLR- 64 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~f---G~~~~~~~~~~~~--~-~~~~~~~i~ha~l~i~------------~~i~~l~l~~~- 64 (102)
.|.+++ .+++.+||+++| |.+.... .+... . .++ + .+-.|... ..+..+++.++
T Consensus 6 ~i~v~d--~~~~~~Fy~~~l~~~G~~~~~~-~~~~~~~~~~~~--~--~~i~l~~~~~~~~~~~~~~~~g~~hia~~v~~ 78 (128)
T cd07242 6 ELTVRD--LERSRAFYDWLLGLLGFEEVKE-WEDGRSWRAGDG--G--TYLVLQQADGESAGRHDRRNPGLHHLAFRAPS 78 (128)
T ss_pred EEEeCC--HHHHHHHHHHHHhhcCCEEEEe-eccCceEEecCC--c--eEEEEEecccCCCcccccCCcCeeEEEEEcCC
Confidence 355666 999999999999 9998754 21110 0 000 0 01111111 11245666665
Q ss_pred --cHHHHH--------------h---hh--cCeEEEEEcCCCCEEEEecc
Q 046408 65 --MLELLL--------------R---WA--ARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 65 --d~~~~~--------------~---~w--G~~~g~v~D~fGv~W~i~~~ 93 (102)
|+++++ . ++ |.+...++||+|+.+.|.+|
T Consensus 79 ~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 79 REAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 455554 1 23 34678899999999999875
No 80
>PLN02300 lactoylglutathione lyase
Probab=97.40 E-value=0.0038 Score=45.97 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=53.5
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE-ecCccc-----cc--ccccCceEEEE-------EeeCCeeeEEEEeeCcHHH
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR-NMETKR-----KA--EQELNSRLPAP-------FFLSLTFPMILLQLRMLEL 68 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~-~~~~~~-----~~--~~~~~~i~ha~-------l~i~~~i~~l~l~~~d~~~ 68 (102)
-|.++| .++|.+||+++||.+.... ..+... .. +.....+++.. ..-+.....+++.++|+++
T Consensus 159 ~l~~~d--~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~ 236 (286)
T PLN02300 159 MLRVGD--LDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYK 236 (286)
T ss_pred EEEeCC--HHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHH
Confidence 466766 8999999999999998643 111110 00 00000111110 0001112468888999998
Q ss_pred HH----------------hhh-cCeEEEEEcCCCCEEEEecc
Q 046408 69 LL----------------RWA-ARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 69 ~~----------------~~w-G~~~g~v~D~fGv~W~i~~~ 93 (102)
+. .++ |.++..++||+|+.+.|...
T Consensus 237 ~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~ 278 (286)
T PLN02300 237 TAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDN 278 (286)
T ss_pred HHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEcc
Confidence 76 344 34788999999999999754
No 81
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=97.28 E-value=0.0056 Score=45.03 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=50.2
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEEecCcc-c-ccccccCceEEEEEee---C-CeeeEEEEeeC---cHHHHH----
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINRNMETK-R-KAEQELNSRLPAPFFL---S-LTFPMILLQLR---MLELLL---- 70 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~-~-~~~~~~~~i~ha~l~i---~-~~i~~l~l~~~---d~~~~~---- 70 (102)
.|.++| .+++++||+++||.+.... .... . ...+. .-|..+.+ . ..+..+++.++ |+++++
T Consensus 9 ~l~V~D--le~s~~FY~~~LG~~~~~~-~~~~~~~~~~~~---~~~~~~~l~~~~~~g~~hiaf~v~~~~dl~~~~~~l~ 82 (303)
T TIGR03211 9 ELRVLD--LEESLKHYTDVLGLEETGR-DGQRVYLKAWDE---WDHYSVILTEADTAGLDHMAFKVESEADLERLVKRLE 82 (303)
T ss_pred EEEeCC--HHHHHHHHHHhcCCEEeee-cCceEEEEeccc---cccceEeeccCCCCceeEEEEEeCCHHHHHHHHHHHH
Confidence 467777 9999999999999997654 1110 0 00000 00111211 1 22345666665 565554
Q ss_pred ----------h---hhcCeEEEEEcCCCCEEEEecccC
Q 046408 71 ----------R---WAARRVGKVKDPCGFTWLICSPVK 95 (102)
Q Consensus 71 ----------~---~wG~~~g~v~D~fGv~W~i~~~~~ 95 (102)
. +.+.+...++||+|+.+.|.+...
T Consensus 83 ~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 83 AYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred HcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 1 122356789999999999987543
No 82
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=97.12 E-value=0.012 Score=42.88 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=48.9
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccc---cCceEE-EEEee-C-CeeeEEEEeeCcHHHH---H-----
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQE---LNSRLP-APFFL-S-LTFPMILLQLRMLELL---L----- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~---~~~i~h-a~l~i-~-~~i~~l~l~~~d~~~~---~----- 70 (102)
|.+++ .++|++||+++||.++......+....... .+.-.| ..+.- . ..+..+++.++|.+++ .
T Consensus 142 l~v~d--l~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hiaf~v~d~~~v~~~~~~l~~ 219 (294)
T TIGR02295 142 VFVPD--VQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTNGNGPRLHHIAYWVHDPLNIIKACDILAS 219 (294)
T ss_pred EEeCC--HHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEeecCCCCceeeEEEEcCCHHHHHHHHHHHHh
Confidence 56776 999999999999999765411111000000 000001 11111 1 2234677888875543 2
Q ss_pred ---h---hhc--------CeEEEEEcCCCCEEEEecc
Q 046408 71 ---R---WAA--------RRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 71 ---~---~wG--------~~~g~v~D~fGv~W~i~~~ 93 (102)
+ .++ .++..++||+|+.|.|.+.
T Consensus 220 ~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 220 AGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred CCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 2 122 2457899999999999764
No 83
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=96.95 E-value=0.0068 Score=46.71 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=48.5
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccccCceEEEEEeeC----CeeeEEEEeeCcHHHHH----------
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQELNSRLPAPFFLS----LTFPMILLQLRMLELLL---------- 70 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----~~i~~l~l~~~d~~~~~---------- 70 (102)
|-+.| .++|.+||+++|+... ..+ ...... + +.|...-++-. .+-+.++|.+++.+++-
T Consensus 253 LpV~D--L~rS~~FYt~LF~~n~-Fsd-e~a~cm-~--dtI~vMllt~~D~~~~~evLl~Ls~~Sre~VD~lv~~A~aaG 325 (357)
T PRK01037 253 LEVQD--LRRAKKFYSKMFGLEC-WDG-DKLFLL-G--KTSLYLQQTKAEKKNRGTTTLSLELECEHDFVRFLRRWEMLG 325 (357)
T ss_pred eeeCC--HHHHHHHHHHHhCCCC-CCC-Cccccc-c--CcEEEEEecCCCCCCcceEEEEeccCCHHHHHHHHHHHHHcC
Confidence 55666 8999999999999875 431 000000 1 11222222211 11167777777655443
Q ss_pred -------hhhcCeEEEEEcCCCCEEEEeccc
Q 046408 71 -------RWAARRVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 71 -------~~wG~~~g~v~D~fGv~W~i~~~~ 94 (102)
+..|- --.+.||+||.|.+....
T Consensus 326 G~~~~~~~D~Gf-~rsf~D~DGH~WEi~~~~ 355 (357)
T PRK01037 326 GELGEQADGHFP-LRLVFDLDGHIWVVSCVQ 355 (357)
T ss_pred CCCCCCcccccC-cceeECCCCCEEEEEEEe
Confidence 44454 568999999999998653
No 84
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=96.93 E-value=0.0047 Score=41.27 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=16.5
Q ss_pred hhhcCeE-EEEEcCCCCEEEEec
Q 046408 71 RWAARRV-GKVKDPCGFTWLICS 92 (102)
Q Consensus 71 ~~wG~~~-g~v~D~fGv~W~i~~ 92 (102)
+..|-.| +++.||+||.|.+..
T Consensus 104 ~d~gfMYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 104 QDEGFMYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred cccccccceeeeCCCCCeEEEEE
Confidence 4445555 479999999999864
No 85
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.33 E-value=0.12 Score=32.46 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
+.++| .++|++||+++||.+....
T Consensus 5 i~V~D--l~~a~~~~~~~lG~~~~~~ 28 (109)
T PF13669_consen 5 IVVPD--LDAAAAFYCDVLGFEPWER 28 (109)
T ss_dssp EEES---HHHHHHHHHHCTTHEEEEE
T ss_pred EEcCC--HHHHHHHHHHhhCCcEEEE
Confidence 56777 9999999999999986543
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=94.29 E-value=0.44 Score=36.21 Aligned_cols=26 Identities=23% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
+.+.+++ +++|++||.++||++....
T Consensus 6 i~~~V~D--~~~a~~~y~~~LGf~~~~~ 31 (353)
T TIGR01263 6 VEFYVGD--AKQAAYYYFTRFGFEKVAK 31 (353)
T ss_pred EEEEeCC--HHHHHHHHHHhcCCcEEEE
Confidence 4567777 8999999999999998764
No 87
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=94.26 E-value=1 Score=29.98 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=44.0
Q ss_pred CeeEEEeCCCCHHHHHHHHHHhhCCeEEEEecCcccccccccCceEEEEEee----------C-CeeeEEEEeeCcHHHH
Q 046408 1 MKPQLLVEASKVTDAVQCYKTAFGAVEINRNMETKRKAEQELNSRLPAPFFL----------S-LTFPMILLQLRMLELL 69 (102)
Q Consensus 1 ~~PyL~~~~~~~~eAi~FY~~~fG~~~~~~~~~~~~~~~~~~~~i~ha~l~i----------~-~~i~~l~l~~~d~~~~ 69 (102)
++|.|-+++ -+.-++||++.+|++.....-.-.-..+. .+.-+-.|.= | -.+-.+.|-+++.+++
T Consensus 2 ~~PvlRVnn--R~~ni~FY~~~LGfkll~EEna~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EI 77 (125)
T PF14506_consen 2 IIPVLRVNN--RDLNIDFYQKTLGFKLLSEENALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEI 77 (125)
T ss_dssp EEEEEEESS--HHHHHHHHTTTT--EEEEEETTEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHH
T ss_pred cCceEEEcC--HHHhHHHHHhccCcEEeeccccEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCCHHHH
Confidence 379999988 69999999999999987541000000000 0011111110 1 1114566666655443
Q ss_pred ---H----------hhhcCeEEEEEcCCCCEEEEecc
Q 046408 70 ---L----------RWAARRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 70 ---~----------~~wG~~~g~v~D~fGv~W~i~~~ 93 (102)
. +--..+-..+.+|.|-.|.|.++
T Consensus 78 e~LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 78 EALLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HHHHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HHHHhcccccceeEEcCCceEEEEECCCCCEEEEEEc
Confidence 3 32234556788999999999865
No 88
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=93.46 E-value=0.1 Score=31.73 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.0
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 3 PQLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
.-|.+++ .++|++||+++||.+....
T Consensus 6 v~l~v~d--l~~s~~FY~~~LG~~~~~~ 31 (138)
T COG0346 6 VTLAVPD--LEASIDFYTDVLGLRLVKD 31 (138)
T ss_pred EEEeeCC--HhHhHHHHHhhcCCeeeee
Confidence 3467777 8999999999999998764
No 89
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=87.61 E-value=0.63 Score=32.45 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhCCeEEEE
Q 046408 12 VTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~~~~~ 30 (102)
.++|++||+++||++....
T Consensus 16 l~~a~~fY~~~LGf~~~~~ 34 (191)
T cd07250 16 MDSWVDFYRKVLGFHRFWS 34 (191)
T ss_pred HHHHHHHHHHhhCCceeeE
Confidence 9999999999999987654
No 90
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=81.32 E-value=8.7 Score=25.62 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=47.3
Q ss_pred EeCCCCHHHHHHHHHHhhCCeEEEEe---cCcccccccccCceEEEEEeeC----Cee---------eEEEEeeCcHHHH
Q 046408 6 LVEASKVTDAVQCYKTAFGAVEINRN---METKRKAEQELNSRLPAPFFLS----LTF---------PMILLQLRMLELL 69 (102)
Q Consensus 6 ~~~~~~~~eAi~FY~~~fG~~~~~~~---~~~~~~~~~~~~~i~ha~l~i~----~~i---------~~l~l~~~d~~~~ 69 (102)
-++| ..|+-+||-++||.++-..+ ...+.- .. ..++|-..... +.+ +.+.+.++|=-++
T Consensus 11 pV~D--l~~tr~FYgevlG~~~GRstd~wvdfDfy-GH--Q~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~~edW~al 85 (138)
T COG3565 11 PVND--LDETRRFYGEVLGCKEGRSTDTWVDFDFY-GH--QVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLPVEDWFAL 85 (138)
T ss_pred eccc--cHHHHhhhhhhcccccccccceEEEeeec-cc--EEEEEecCCcccccCcccCCCCCCCccceEEEEHHHHHHH
Confidence 3555 89999999999999875331 000000 01 13555554432 111 5666666643222
Q ss_pred H--------------------hhhcCeEEEEEcCCCCEEEEec
Q 046408 70 L--------------------RWAARRVGKVKDPCGFTWLICS 92 (102)
Q Consensus 70 ~--------------------~~wG~~~g~v~D~fGv~W~i~~ 92 (102)
- ++=-+|.--+.||+|+...+-.
T Consensus 86 aerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 86 AERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred HHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 1 3333678889999999988753
No 91
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=81.04 E-value=2.4 Score=31.70 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
+|.+.+ .+||=.||+++||++....
T Consensus 173 HL~v~~--l~eA~~fY~~~LG~~~~~~ 197 (265)
T COG2514 173 HLKVAD--LEEAEQFYEDVLGLEVTAR 197 (265)
T ss_pred EEEeCC--HHHHHHHHHHhcCCeeeec
Confidence 567766 9999999999999998876
No 92
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=80.66 E-value=22 Score=26.68 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhCCeEEEE-ecCc----------cc------ccccccCceEEEEEeeC-Ce--e------eEEEEeeCc
Q 046408 12 VTDAVQCYKTAFGAVEINR-NMET----------KR------KAEQELNSRLPAPFFLS-LT--F------PMILLQLRM 65 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~~~~~-~~~~----------~~------~~~~~~~~i~ha~l~i~-~~--i------~~l~l~~~d 65 (102)
....++||+++||-++... .++. +. ..-+..+.-.-.+|+.+ +. - -.+.|..+|
T Consensus 28 r~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelGndfg~i~I~s~d 107 (299)
T KOG2943|consen 28 RAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELGNDFGGITIASDD 107 (299)
T ss_pred hHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceeccCCcccEEEeHHH
Confidence 7899999999999998753 2222 10 00011011222344333 21 1 345555555
Q ss_pred HHHHH--------hhhcCeEEEEEcCCCCEEEEecccC
Q 046408 66 LELLL--------RWAARRVGKVKDPCGFTWLICSPVK 95 (102)
Q Consensus 66 ~~~~~--------~~wG~~~g~v~D~fGv~W~i~~~~~ 95 (102)
+-..- +--|.-..-++||+|+-..|-....
T Consensus 108 v~~~ve~v~~p~~~~~g~~~~~v~dPdGykF~l~~~~p 145 (299)
T KOG2943|consen 108 VFSKVEKVNAPGGKGSGCGIAFVKDPDGYKFYLIDRGP 145 (299)
T ss_pred HHHHHHHhcCcCCcccceEEEEEECCCCcEEEEeccCC
Confidence 43222 2234566779999999999975433
No 93
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=77.91 E-value=2.3 Score=32.32 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhCCeEEEE
Q 046408 12 VTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~~~~~ 30 (102)
.+++++||+++||++....
T Consensus 171 l~~~~~fY~~~lGf~~~~~ 189 (353)
T TIGR01263 171 MEPWAEFYEKIFGFREIRS 189 (353)
T ss_pred HHHHHHHHHHHhCCceeeE
Confidence 9999999999999987643
No 94
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=77.41 E-value=3.4 Score=19.21 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.0
Q ss_pred eEEEEEcCCCCEEE
Q 046408 76 RVGKVKDPCGFTWL 89 (102)
Q Consensus 76 ~~g~v~D~fGv~W~ 89 (102)
-+..+.|+.|..|.
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 46789999999996
No 95
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=74.54 E-value=4.3 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.1
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
.|.+++ .+++..||++++|.++..+
T Consensus 15 ~L~vrd--L~~~~~FY~~ilGL~v~~~ 39 (265)
T COG2514 15 TLNVRD--LDSMTSFYQEILGLQVLEE 39 (265)
T ss_pred EEEecc--HHHHHHHHHHhhCCeeeec
Confidence 478888 9999999999999998765
No 96
>PF15067 FAM124: FAM124 family
Probab=73.50 E-value=17 Score=26.82 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhCCeEEEEecCccc----c-cccccCceEEEEEe---eC-Cee----eEEEEeeCcHHHHH-------h
Q 046408 12 VTDAVQCYKTAFGAVEINRNMETKR----K-AEQELNSRLPAPFF---LS-LTF----PMILLQLRMLELLL-------R 71 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~~~~~~~~~~~----~-~~~~~~~i~ha~l~---i~-~~i----~~l~l~~~d~~~~~-------~ 71 (102)
-+++++||+-+++-+.... ..+. . ... +.-+--.|+ .+ ... ..|.+.|.|+-++- .
T Consensus 141 ~~d~vr~Yelil~~~~~~~--k~~FC~F~lys~~--~~~iQlsLK~lp~~~~p~p~esavLqF~V~~igqLvpLLPnpc~ 216 (236)
T PF15067_consen 141 YEDMVRFYELILQREPTQQ--KEDFCFFTLYSQP--GLDIQLSLKQLPPGMSPEPTESAVLQFRVEDIGQLVPLLPNPCS 216 (236)
T ss_pred HHHHHHHHHHHhccCccee--eCCcEEEEEecCC--CeEEEEEeccCCCCCCcccccceEEEEEecchhhhcccCCCCcc
Confidence 9999999999998776543 1110 0 000 011111111 01 000 45666688887665 7
Q ss_pred hhcCeEEEEEcCCCCEEEE
Q 046408 72 WAARRVGKVKDPCGFTWLI 90 (102)
Q Consensus 72 ~wG~~~g~v~D~fGv~W~i 90 (102)
|-|+.-=+.+|++|+-+.+
T Consensus 217 PIS~~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 217 PISETRWQTEDYDGNKILL 235 (236)
T ss_pred cccCCcceeeCCCCCEecc
Confidence 7787667999999998754
No 97
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=72.23 E-value=33 Score=25.74 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEIN 29 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~ 29 (102)
.|.|.+ .+.|+.||.++||.++..
T Consensus 154 ~l~Vgd--L~ks~kyw~~~lgM~ile 177 (299)
T KOG2943|consen 154 MLNVGD--LQKSIKYWEKLLGMKILE 177 (299)
T ss_pred EEEehh--HHHHHHHHHHHhCcchhh
Confidence 467766 999999999999998765
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=61.84 E-value=6.7 Score=30.89 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhCCeEE
Q 046408 12 VTDAVQCYKTAFGAVEI 28 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~~~ 28 (102)
.++++.||+++||++..
T Consensus 191 ld~a~~fY~~vlGf~~~ 207 (398)
T PLN02875 191 LLPAVNYIAGFTGFHEF 207 (398)
T ss_pred HHHHHHHHHHhcCCeee
Confidence 89999999999999765
No 99
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=61.72 E-value=10 Score=20.95 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.7
Q ss_pred eCCCCHHHHHHHHHHhhCCeEE
Q 046408 7 VEASKVTDAVQCYKTAFGAVEI 28 (102)
Q Consensus 7 ~~~~~~~eAi~FY~~~fG~~~~ 28 (102)
|.|.+|.++.++.+++||....
T Consensus 18 ~~G~~C~~~t~~lE~~LG~v~~ 39 (48)
T PF11211_consen 18 FKGSSCLEATAALEEALGTVTS 39 (48)
T ss_pred ccChhHHHHHHHHHHHhCceee
Confidence 4566799999999999998873
No 100
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=55.26 E-value=30 Score=20.81 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=18.4
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCCeEEE
Q 046408 2 KPQLLVEASKVTDAVQCYKTAFGAVEIN 29 (102)
Q Consensus 2 ~PyL~~~~~~~~eAi~FY~~~fG~~~~~ 29 (102)
.|++.+..+ =..|..+|++ +|++...
T Consensus 56 ~~~l~v~~~-N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 56 TPFLYVDAD-NEASIRLYEK-LGFREIE 81 (86)
T ss_dssp EEEEEEETT--HHHHHHHHH-CT-EEEE
T ss_pred cEEEEEECC-CHHHHHHHHH-cCCEEEE
Confidence 578877543 4789999998 6988764
No 101
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=49.07 E-value=18 Score=17.95 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhh
Q 046408 12 VTDAVQCYKTAF 23 (102)
Q Consensus 12 ~~eAi~FY~~~f 23 (102)
-++|+++|++++
T Consensus 15 ~~~Ai~~y~~aL 26 (36)
T PF13176_consen 15 YEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 789999999977
No 102
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=48.25 E-value=29 Score=22.61 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=18.7
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
.|.|+.+ =..|+.||++ +|+++..+
T Consensus 130 ~L~V~~~-N~~Ai~lY~~-~GF~~~~~ 154 (177)
T COG0456 130 VLEVRES-NEAAIGLYRK-LGFEVVKI 154 (177)
T ss_pred EEEEecC-ChHHHHHHHH-cCCEEEee
Confidence 4556543 2699999999 89998765
No 103
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=48.17 E-value=76 Score=24.88 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHhhCCeEEEE
Q 046408 9 ASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 9 ~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
++ ...+..||+++||++.+..
T Consensus 178 ~~-md~w~~FY~~if~~~~~~~ 198 (363)
T COG3185 178 GQ-MDTWVLFYESLFGFREIQY 198 (363)
T ss_pred hh-HHHHHHHHHHHhCccceee
Confidence 44 8999999999999987753
No 104
>PHA02978 hypothetical protein; Provisional
Probab=41.46 E-value=29 Score=22.78 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.9
Q ss_pred eEEEEEcCCCCEEEEeccc
Q 046408 76 RVGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 76 ~~g~v~D~fGv~W~i~~~~ 94 (102)
-|++-.||.|...+++++.
T Consensus 75 iy~sy~~~~gisiqvst~~ 93 (135)
T PHA02978 75 IYFSYADPDGISIQVSTPK 93 (135)
T ss_pred EEEEecCCCceEEEEeCCC
Confidence 5889999999999999875
No 105
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=36.48 E-value=12 Score=23.99 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=12.7
Q ss_pred hcCeEEEEEcCCCCEEEE
Q 046408 73 AARRVGKVKDPCGFTWLI 90 (102)
Q Consensus 73 wG~~~g~v~D~fGv~W~i 90 (102)
=+.++-.+.||-|+-|++
T Consensus 83 Kk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 83 KKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp TT-SEEEEE-TTS-EEEE
T ss_pred CCceEEEEECCcceEEEe
Confidence 367888999999999987
No 106
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=31.48 E-value=36 Score=26.48 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhCCeEEE
Q 046408 12 VTDAVQCYKTAFGAVEIN 29 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~~~~ 29 (102)
+..|-.+|..-||++-..
T Consensus 28 a~q~A~~y~~~fGfep~A 45 (381)
T KOG0638|consen 28 AKQAARWYCSGFGFEPLA 45 (381)
T ss_pred cHHHHHHHHhhcCCcchh
Confidence 999999999999998654
No 107
>PF15524 Toxin_45: Putative toxin 45
Probab=29.91 E-value=26 Score=21.83 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=9.9
Q ss_pred EEcCCCCEEEEec
Q 046408 80 VKDPCGFTWLICS 92 (102)
Q Consensus 80 v~D~fGv~W~i~~ 92 (102)
..|+||+.|.=.-
T Consensus 40 yvDkFGNeWtkgP 52 (94)
T PF15524_consen 40 YVDKFGNEWTKGP 52 (94)
T ss_pred chhcccceeccCC
Confidence 4699999997543
No 108
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=29.25 E-value=49 Score=15.53 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhh
Q 046408 12 VTDAVQCYKTAF 23 (102)
Q Consensus 12 ~~eAi~FY~~~f 23 (102)
-++|+..|++++
T Consensus 17 ~~~A~~~~~~al 28 (34)
T PF00515_consen 17 YEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 789999999986
No 109
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=28.95 E-value=55 Score=23.10 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 5 LLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 5 L~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
|.|+-. -++||..|++.+|+++...
T Consensus 111 LHVR~S-NraAl~LY~~tl~F~v~ev 135 (193)
T KOG3235|consen 111 LHVRKS-NRAALHLYKNTLGFVVCEV 135 (193)
T ss_pred Eeeecc-cHHHHHhhhhccceEEeec
Confidence 555554 5899999999999998765
No 110
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=28.67 E-value=75 Score=15.95 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=13.9
Q ss_pred EEEEEcCCCCEEEEeccc
Q 046408 77 VGKVKDPCGFTWLICSPV 94 (102)
Q Consensus 77 ~g~v~D~fGv~W~i~~~~ 94 (102)
--.++||.|..|.+....
T Consensus 7 l~~~~~p~G~~~~~~YD~ 24 (42)
T TIGR01643 7 LTGSTDADGTTTRYTYDA 24 (42)
T ss_pred EEEEECCCCCEEEEEECC
Confidence 347899999999987643
No 111
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.56 E-value=51 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhCCeEEEE
Q 046408 12 VTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~~~~~ 30 (102)
..||+.||++.||.++...
T Consensus 147 ~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 147 IHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred cHHHHHHHHHhcCceeeec
Confidence 5789999999999998654
No 112
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=26.49 E-value=66 Score=15.09 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhh
Q 046408 12 VTDAVQCYKTAF 23 (102)
Q Consensus 12 ~~eAi~FY~~~f 23 (102)
..+|+.+|+++-
T Consensus 21 ~~~A~~~~~~Aa 32 (36)
T smart00671 21 LEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHHH
Confidence 899999999863
No 113
>PF11320 DUF3122: Protein of unknown function (DUF3122); InterPro: IPR021469 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=25.84 E-value=49 Score=22.30 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=13.0
Q ss_pred EEEEcCCCCEEEEec
Q 046408 78 GKVKDPCGFTWLICS 92 (102)
Q Consensus 78 g~v~D~fGv~W~i~~ 92 (102)
=+++|..|..|++..
T Consensus 19 qsLrD~~g~sWQvV~ 33 (134)
T PF11320_consen 19 QSLRDQDGNSWQVVL 33 (134)
T ss_pred eeecCCCCCceEEEE
Confidence 468999999999965
No 114
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=25.35 E-value=52 Score=15.83 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhCCe
Q 046408 12 VTDAVQCYKTAFGAV 26 (102)
Q Consensus 12 ~~eAi~FY~~~fG~~ 26 (102)
-++|+.+|++++...
T Consensus 18 ~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 18 YEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHH
Confidence 788888888887543
No 115
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.15 E-value=56 Score=15.75 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhh
Q 046408 12 VTDAVQCYKTAF 23 (102)
Q Consensus 12 ~~eAi~FY~~~f 23 (102)
.++|+.||+++-
T Consensus 24 ~~~A~~~~~~Aa 35 (39)
T PF08238_consen 24 YEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccchHHHHHHHH
Confidence 789999999863
No 116
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=25.03 E-value=2.2e+02 Score=18.98 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=11.9
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeEEEE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~~~~ 30 (102)
.+.+++ .++|.++|++.+|+++...
T Consensus 5 v~~v~d--l~~a~~~~~~~lGf~~~~g 29 (175)
T PF13468_consen 5 VIAVRD--LDAAVERFEQRLGFTVTPG 29 (175)
T ss_dssp EEE-TT--GGG----GGGS--S--EEE
T ss_pred EEEcCC--HHHHHHhhhhcceEeecCC
Confidence 355665 8999999988999998754
No 117
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=24.66 E-value=91 Score=20.05 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=16.5
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCeE
Q 046408 4 QLLVEASKVTDAVQCYKTAFGAVE 27 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~fG~~~ 27 (102)
.|-|++ .+.|-+||+. |+|+.
T Consensus 58 LikF~~--~~~Ad~Fy~~-fNGk~ 78 (110)
T PF07576_consen 58 LIKFRD--QESADEFYEE-FNGKP 78 (110)
T ss_pred EEEECC--HHHHHHHHHH-hCCCc
Confidence 467888 7999999997 66654
No 118
>PHA01745 hypothetical protein
Probab=24.64 E-value=60 Score=24.70 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=18.5
Q ss_pred eeEEEe-CCCCHHHHHHHHHH-----hhCCeEEE
Q 046408 2 KPQLLV-EASKVTDAVQCYKT-----AFGAVEIN 29 (102)
Q Consensus 2 ~PyL~~-~~~~~~eAi~FY~~-----~fG~~~~~ 29 (102)
.|.+.. +....++|++||.+ ||||-+..
T Consensus 104 IPViH~Y~~e~l~~~ldfysqy~d~iAfGG~Vp~ 137 (306)
T PHA01745 104 IPVIHLYPVREVDEAIDFYSQYTDYIAFGGIVAS 137 (306)
T ss_pred eeEEeecCHHHHHHHHHHHHhhhhhhhccccccH
Confidence 455533 22237789999999 78876653
No 119
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=23.09 E-value=23 Score=21.59 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.0
Q ss_pred eEEEeCCCCHHHHHHHHHHh
Q 046408 3 PQLLVEASKVTDAVQCYKTA 22 (102)
Q Consensus 3 PyL~~~~~~~~eAi~FY~~~ 22 (102)
|.|+..+ ..+|++||.+.
T Consensus 54 p~Lt~~d--I~aal~ya~~~ 71 (79)
T COG2442 54 PDLTLED--IRAALRYAADR 71 (79)
T ss_pred CCCCHHH--HHHHHHHHHHH
Confidence 6677777 89999999986
No 120
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=23.03 E-value=1.2e+02 Score=19.11 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhCCeEEEE
Q 046408 13 TDAVQCYKTAFGAVEINR 30 (102)
Q Consensus 13 ~eAi~FY~~~fG~~~~~~ 30 (102)
..|++||++ +|++....
T Consensus 123 ~~~i~~~~~-~GF~~~g~ 139 (155)
T PF13420_consen 123 EKAINFYKK-LGFEEEGE 139 (155)
T ss_dssp HHHHHHHHH-TTEEEEEE
T ss_pred HHHHHHHHh-CCCEEEEE
Confidence 889999998 79998765
No 121
>PHA01807 hypothetical protein
Probab=23.01 E-value=85 Score=21.15 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=14.5
Q ss_pred EEEeCCCCHHHHHHHHHHh
Q 046408 4 QLLVEASKVTDAVQCYKTA 22 (102)
Q Consensus 4 yL~~~~~~~~eAi~FY~~~ 22 (102)
.|.++.. ...|++||+++
T Consensus 119 ~l~v~~~-n~~a~~~y~~~ 136 (153)
T PHA01807 119 AFSHREG-EGRYTIHYRRV 136 (153)
T ss_pred EEEecCC-cHHHHHHHHhc
Confidence 4667665 89999999985
No 122
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=22.53 E-value=17 Score=26.33 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=14.7
Q ss_pred CeEEEEEcCCCCEEEEecc
Q 046408 75 RRVGKVKDPCGFTWLICSP 93 (102)
Q Consensus 75 ~~~g~v~D~fGv~W~i~~~ 93 (102)
.+.|+..|+||+.|++-+-
T Consensus 114 ~~~~~~~D~FG~~~~lP~i 132 (275)
T PF01074_consen 114 PKVAWQPDSFGHSAQLPQI 132 (275)
T ss_dssp -SEEEESSSSSB-TCHHHH
T ss_pred CCeEEeCCCCCCchhhHHH
Confidence 5789999999999987653
No 123
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=21.18 E-value=67 Score=25.07 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHhhCC
Q 046408 8 EASKVTDAVQCYKTAFGA 25 (102)
Q Consensus 8 ~~~~~~eAi~FY~~~fG~ 25 (102)
+|+ .-+||+||++|+.-
T Consensus 32 ~G~-l~dai~fYR~AlqI 48 (366)
T KOG2997|consen 32 DGS-LYDAINFYRDALQI 48 (366)
T ss_pred cCc-HHHHHHHHHhhhcC
Confidence 354 88999999999854
Done!