BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046411
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 128/282 (45%), Gaps = 42/282 (14%)
Query: 107 DRWILFIKVDRLSIIG-GTLDGKGA--------GFWA------CRKSGRNCPVGTRSITI 151
D +I + I G GT+DG+G +W +K +N P R I I
Sbjct: 100 DAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTP---RLIQI 156
Query: 152 NSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSXXXXXXX 211
N + N + ++ INS H+V S + P+ + NTDGI SS
Sbjct: 157 NKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAY 216
Query: 212 XXXXXXDDCISV----GRG-TRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSV 266
DD +++ GR TRN+ + + G GHG+SIGS GV NVT+ +
Sbjct: 217 SNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLK 271
Query: 267 FTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKI 326
G+ NG+RIKS + + V V + N++M+NV PI+ID Y K G +
Sbjct: 272 MNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY--------EKKEGSNV 322
Query: 327 ---SQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLT 365
S +T++++ TS T V + ++ + ++++KLT
Sbjct: 323 PDWSDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNVKLT 362
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 16/264 (6%)
Query: 122 GGTLDGKGAGFWACRKS--GRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNN 179
G ++D +G+ +W + S G+ P + ++ S+N + GL +N+ + I+S
Sbjct: 77 GHSIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSN---IKGLNVLNTPVQAFSINSATT 133
Query: 180 VIVRNV----KFIAPAESPNTDGIHVESSXXXXXXXXXXXXXDDCISVGRGTRNLHMSNI 235
+ V +V A NTD V SS DDC+++ GT N+ +
Sbjct: 134 LGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGG 192
Query: 236 KCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNI 295
C GHG+SIGS+G +++ V+ VT++NS SDNGVRIK+ + + S V V + I
Sbjct: 193 TCSGGHGLSIGSVG-GRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGS-VSGVTYSGI 250
Query: 296 IMRNV-KNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPC 354
+ N+ K I+I+Q+Y N +GV I+ +T I G+ A+ + +S C
Sbjct: 251 TLSNIAKYGIVIEQDY-ENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGAC 309
Query: 355 RGIKLQDIKLTYMNKAATSTCKNI 378
K + +T K+ + C NI
Sbjct: 310 SNWKWSGVSVTGGKKS--TKCSNI 331
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 121/264 (45%), Gaps = 18/264 (6%)
Query: 122 GGTLDGKGAGFWACR--KSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNN 179
G +++G G+ +W G+ P + +S N ++SGL +NS + ++ +
Sbjct: 81 GHSINGDGSRWWDGEGGNGGKTKP---KFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDY 137
Query: 180 VIVRNVKFIAPAESPN----TDGIHVESSXXXXXXXXXXXXXDDCISVGRGTRNLHMSNI 235
+ ++++ N TD + +S DDC++V G N++ S
Sbjct: 138 LTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGG 196
Query: 236 KCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNI 295
C GHG+SIGS+G +++ V+NVT +S SDNGVRIK+ + S V +V +++I
Sbjct: 197 YCSGGHGLSIGSVGG-RSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGS-VSDVTYKDI 254
Query: 296 IMRNV-KNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPC 354
+ ++ K I++ QNY + +GV I+ N+ G+ + S C
Sbjct: 255 TLTSIAKYGIVVQQNYGDTSS---TPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSC 311
Query: 355 RGIKLQDIKLTYMNKAATSTCKNI 378
D+ ++ +S C N+
Sbjct: 312 SDWTWTDVSVS--GGKTSSKCTNV 333
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 28/340 (8%)
Query: 30 NVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQ 89
N++++GA D TD + AWA AC+S + +P G Y + V S +Q
Sbjct: 22 NILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTWVTL-TGGSATAIQ 77
Query: 90 ISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGF-WACRKSGRNCPVGTRS 148
+ G I YR S I + T G GF + G G R
Sbjct: 78 LDGII-----YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGT---YGARI 129
Query: 149 ITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSXXXX 208
+ + + V + +++ H + +C++ V N+ E DGI V S
Sbjct: 130 LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEG-GLDGIDVWGSNIWV 188
Query: 209 XXXXXXXXXDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFT 268
D+C++V N+ + +I C G ++GSLG D + V ++ N V+T
Sbjct: 189 HDVEVTNK-DECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRN-VYT 243
Query: 269 GSDNGVR-IKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKIS 327
S N + IKS V NV +N I + ID + + GV+++
Sbjct: 244 WSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDIDGYW---SSMTAVAGDGVQLN 298
Query: 328 QVTYRNIQGTS---ATPKAVAFDCSSSNPCRGIKLQDIKL 364
+T +N +GT AT + CS + PC + L+DI +
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 155/356 (43%), Gaps = 51/356 (14%)
Query: 47 SFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKS 106
S L +C++ + VP G+ L +++ ++ TV GT + +
Sbjct: 9 SGLATAVSSCKNIVLNGFQVPTGKQLDLSSL-----QNDSTVTFKGTTT----FATTADN 59
Query: 107 DRWILFIKVDRLSIIGGT---LDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLT 163
D + I ++I G + +DG G +W + G+ S + ++ IV T
Sbjct: 60 DFNPIVISGSNITITGASGHVIDGNGQAYWDGK--------GSNSNSNQKPDHFIVVQKT 111
Query: 164 SINSQLSHLVIS---------------SCNNVIVRNVKFIAP-------AESPNTDGIHV 201
+ NS++++L I + + +I+ N P + NTDG +
Sbjct: 112 TGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDI 171
Query: 202 ESSXXXXXXXXXXXXXDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVT 261
SS DDC++V GT N+ +SN+ C GHG+SIGS+G +++ V+ V
Sbjct: 172 SSSDHVTLDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGLSIGSVGGK-SDNVVDGVQ 229
Query: 262 LTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKN-PILIDQNYCPNNQGCPNK 320
+S S NG RIKS + + + + NV +QNI + N+ + + Q+Y N G K
Sbjct: 230 FLSSQVVNSQNGCRIKSNSGATGT-INNVTYQNIALTNISTYGVDVQQDYL--NGGPTGK 286
Query: 321 -NSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTC 375
+GVKIS + + + GT A+ F C G +T K TS+C
Sbjct: 287 PTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGGK--TSSC 340
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
Query: 195 NTDGIHVESSXXXXXXXXXXXXXDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254
NTD V +S DDC++V G N+ + C GHG+SIGS+G D +
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVG-DRSN 235
Query: 255 DGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKN-PILIDQNYCPN 313
+ V+NVT+ +S + S+N VRIK+ + + S V + + NI+M + + ++I Q+Y +
Sbjct: 236 NVVKNVTIEHSTVSNSENAVRIKTISGATGS-VSEITYSNIVMSGISDYGVVIQQDY-ED 293
Query: 314 NQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATS 373
+ +GV I V ++ G+ + + S C D+K+T K+ +
Sbjct: 294 GKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKS--T 351
Query: 374 TCKNI 378
CKN
Sbjct: 352 ACKNF 356
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 17/224 (7%)
Query: 122 GGTLDGKGAGFWACRKS--GRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNN 179
G +DG G+ +W + + G+ P + + I+ + G+ N+ + + + + N
Sbjct: 77 GAVIDGDGSRWWDSKGTNGGKTKP---KFMYIHDVEDSTFKGINIKNTPVQAISVQATN- 132
Query: 180 VIVRNVKFIAPAESP-----NTDGIHVESSXXXXXXXXXXXXXDDCISVGRGTRNLHMSN 234
+ N I ++ NTDG + S DDCI++ G ++ +
Sbjct: 133 -VHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTG 190
Query: 235 IKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQN 294
C GHG+SIGS+G +++ V+NVT+++S + S NGVRIK+ + + V + + N
Sbjct: 191 GTCSGGHGLSIGSVGG-RDDNTVKNVTISDSTVSNSANGVRIKTIYKETGD-VSEITYSN 248
Query: 295 IIMRNVKN-PILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGT 337
I + + + I+I+Q+Y N ++G+ I+ VT + GT
Sbjct: 249 IQLSGITDYGIVIEQDY-ENGSPTGTPSTGIPITDVTVDGVTGT 291
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 138/347 (39%), Gaps = 90/347 (25%)
Query: 30 NVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGP--CKSRIT 87
N++ FGA+ DGRTD ++SF RA + ++VP+G +L GP KS I
Sbjct: 29 NLLDFGARGDGRTDCSESFKRAIEELSKQG-GGRLIVPEGVFLT------GPIHLKSNIE 81
Query: 88 VQISGTI-VAPNDYR------------ALGKSDRWILFIKVDRLSIIG-GTLDGKG--AG 131
+ + GTI P+ R L + + + ++I G G LDG
Sbjct: 82 LHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEH 141
Query: 132 FWACR-------KSG----------------RNCPVGTRS-----------ITINSANNV 157
+W + K G R PV R + NV
Sbjct: 142 WWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNV 201
Query: 158 IVSGLTSINSQLS--HLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSXXXXXXXXXXX 215
+V G+ INS + H V+S NVI+RN++ + PN DGI ES
Sbjct: 202 LVEGVKIINSPMWCIHPVLSE--NVIIRNIEI--SSTGPNNDGIDPESCKYMLIEKCRFD 257
Query: 216 XXDDCISV--GR---GTR------------NLHMSNIKCGPGHGVSIGSLGKDLNEDGVE 258
DD + + GR G R NL +S G G+ IGS GV
Sbjct: 258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG---GLVIGSEMSG----GVR 310
Query: 259 NVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPIL 305
NV N+V+ + +R+K+ +R ++ N+FF + + NV ++
Sbjct: 311 NVVARNNVYMNVERALRLKTNSRRG-GYMENIFFIDNVAVNVSEEVI 356
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 117/293 (39%), Gaps = 44/293 (15%)
Query: 55 ACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPN---DYRALGKSDRWIL 111
C + + VP G L+ N P K TV ++G I D I
Sbjct: 16 GCSAVTLNGFTVPAGNTLVLN-----PDKGA-TVTMAGDITFAKTTLDGPLFTIDGTGIN 69
Query: 112 FIKVDRLSIIGGTLDGKGAGFWACRKS--GRNCP--------VGT--RSITINSANNVIV 159
F+ D + DG GA +W + + G + P GT + +NS I
Sbjct: 70 FVGADHI------FDGNGALYWDGKGTNNGTHKPHPFLKIKGSGTYKKFEVLNSPAQAIS 123
Query: 160 SGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSXXXXXXXXXXXXXDD 219
G T +HL + + + V + NTDG V S+ DD
Sbjct: 124 VGPTD-----AHLTL---DGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDD 174
Query: 220 CISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSW 279
CI++ G N+ N +C GHG+SIGS+ + V NV + + T S GVRIK+
Sbjct: 175 CIAINDG-NNIRFENNQCSGGHGISIGSIATGKH---VSNVVIKGNTVTRSMYGVRIKAQ 230
Query: 280 ARPSRSFVRNVFFQ-NIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTY 331
+ + V V + N I K +LI Q+Y P++ G P +G S V +
Sbjct: 231 RTATSASVSGVTYDANTISGIAKYGVLISQSY-PDDVGNP--GTGAPFSDVNF 280
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 149 ITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSXXXX 208
+T+ NV ++G T N H +++ N+ +V N ++ N DGI +S
Sbjct: 334 MTLRGVENVYLAGFTVRNPAF-HGIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVM 392
Query: 209 XXXXXXXXXDDCISVGRGTRN------------LHMSNIKCGPGHGVSIGSLGKDLNEDG 256
DDCI+ GT L + + G G V+ G
Sbjct: 393 VFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTGA-----W 447
Query: 257 VENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILI 306
+E++ N+V +D G+R KS + RNV F+N MR++ +++
Sbjct: 448 IEDILAENNVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLAKQVMV 496
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 31 VITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRG-PCKSRITVQ 89
V FGA + +D + + RA R T+++P G Y F G KS + ++
Sbjct: 25 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYH-----FLGIQMKSNVHIR 79
Query: 90 ISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRN 141
+ ++ + GK+ R + + V+ + + + G G GF K R+
Sbjct: 80 VESDVIIKPTWNGDGKNHR-LFEVGVNNI-VRNFSFQGLGNGFLVDFKDSRD 129
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 31 VITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRG-PCKSRITVQ 89
V FGA + +D + + RA R T+++P G Y F G KS + ++
Sbjct: 26 VDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYH-----FLGIQMKSNVHIR 80
Query: 90 ISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRN 141
+ ++ + GK+ R + + V+ + + + G G GF K R+
Sbjct: 81 VESDVIIKPTWNGDGKNHR-LFEVGVNNI-VRNFSFQGLGNGFLVDFKDSRD 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,989,258
Number of Sequences: 62578
Number of extensions: 437243
Number of successful extensions: 762
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 21
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)