Query 046411
Match_columns 392
No_of_seqs 186 out of 1657
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1.7E-79 3.7E-84 593.2 47.3 391 1-392 1-392 (394)
2 PLN02793 Probable polygalactur 100.0 3.1E-76 6.8E-81 579.2 49.4 366 26-392 50-423 (443)
3 PLN02218 polygalacturonase ADP 100.0 5.7E-75 1.2E-79 567.7 46.6 364 21-391 60-430 (431)
4 PLN03010 polygalacturonase 100.0 8.9E-74 1.9E-78 554.3 48.6 355 24-392 42-403 (409)
5 PLN03003 Probable polygalactur 100.0 1E-74 2.2E-79 563.7 41.6 364 21-392 16-389 (456)
6 PLN02188 polygalacturonase/gly 100.0 5.6E-74 1.2E-78 557.2 43.8 366 25-392 33-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 4.6E-57 9.9E-62 432.7 33.4 322 56-382 1-324 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 7.6E-42 1.6E-46 337.5 27.2 273 24-307 78-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 5.2E-26 1.1E-30 218.2 24.3 247 25-299 34-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 2.3E-21 4.9E-26 176.5 19.8 60 28-92 1-61 (225)
11 PLN02793 Probable polygalactur 99.8 3.1E-18 6.8E-23 169.1 30.5 218 84-339 143-397 (443)
12 PLN02188 polygalacturonase/gly 99.8 8E-18 1.7E-22 164.4 30.9 221 84-339 122-377 (404)
13 PLN03003 Probable polygalactur 99.8 7.5E-18 1.6E-22 165.3 29.1 205 147-376 105-342 (456)
14 PLN02218 polygalacturonase ADP 99.8 6.7E-18 1.5E-22 166.0 27.6 197 147-368 148-384 (431)
15 PLN03010 polygalacturonase 99.8 2.5E-17 5.4E-22 160.6 30.8 215 147-386 131-375 (409)
16 PLN02155 polygalacturonase 99.8 2.7E-17 5.9E-22 159.9 28.8 198 108-340 146-367 (394)
17 PF00295 Glyco_hydro_28: Glyco 99.8 1.1E-17 2.4E-22 160.6 24.4 196 107-338 92-310 (326)
18 PF03718 Glyco_hydro_49: Glyco 99.8 3.5E-17 7.6E-22 158.8 24.9 274 61-367 232-554 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 7.1E-15 1.5E-19 140.1 26.5 226 48-307 1-250 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 1.4E-11 3.1E-16 123.0 16.2 154 168-339 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.3 4.8E-10 1E-14 107.0 23.8 163 115-300 31-203 (314)
22 PRK10123 wcaM putative colanic 99.2 2.5E-09 5.5E-14 96.7 18.2 246 4-298 9-283 (464)
23 PF12541 DUF3737: Protein of u 99.0 1.5E-08 3.3E-13 91.0 14.5 115 153-305 116-230 (277)
24 PF13229 Beta_helix: Right han 98.7 3.2E-07 7E-12 78.0 13.3 139 149-307 3-145 (158)
25 TIGR03808 RR_plus_rpt_1 twin-a 98.7 2.5E-06 5.4E-11 83.2 19.6 145 147-305 107-289 (455)
26 PF14592 Chondroitinas_B: Chon 98.7 3.5E-06 7.5E-11 82.1 19.8 32 44-78 3-34 (425)
27 COG3420 NosD Nitrous oxidase a 98.6 1.5E-05 3.4E-10 74.1 21.6 185 59-276 32-221 (408)
28 PF12541 DUF3737: Protein of u 98.6 1.1E-06 2.3E-11 79.3 12.6 136 113-275 95-230 (277)
29 PLN02497 probable pectinestera 98.5 4.8E-05 1E-09 72.4 23.9 46 44-92 43-90 (331)
30 PF13229 Beta_helix: Right han 98.5 1.9E-06 4.1E-11 73.2 13.0 138 111-277 4-145 (158)
31 PLN02480 Probable pectinestera 98.5 8.5E-05 1.9E-09 71.2 24.0 197 43-299 58-276 (343)
32 COG3866 PelB Pectate lyase [Ca 98.5 1.8E-05 4E-10 72.7 18.0 129 86-239 77-228 (345)
33 PF07602 DUF1565: Protein of u 98.4 2.9E-05 6.3E-10 70.9 18.6 43 43-92 13-60 (246)
34 PF05048 NosD: Periplasmic cop 98.4 1.4E-05 3.1E-10 73.3 16.9 127 148-292 37-165 (236)
35 PLN02176 putative pectinestera 98.4 0.0002 4.4E-09 68.5 23.4 195 44-299 50-270 (340)
36 PF03718 Glyco_hydro_49: Glyco 98.3 5.4E-05 1.2E-09 74.9 19.2 242 60-338 255-553 (582)
37 PLN02665 pectinesterase family 98.3 0.00041 8.8E-09 67.1 24.6 46 44-92 79-126 (366)
38 PLN02682 pectinesterase family 98.3 0.00045 9.8E-09 66.7 24.3 47 43-92 80-128 (369)
39 PLN02773 pectinesterase 98.3 0.00033 7.1E-09 66.5 22.3 46 44-92 16-63 (317)
40 PF05048 NosD: Periplasmic cop 98.3 4.6E-05 1E-09 69.9 16.3 135 148-306 15-151 (236)
41 PLN02634 probable pectinestera 98.2 0.0005 1.1E-08 66.1 22.1 46 44-92 67-114 (359)
42 PLN02671 pectinesterase 98.2 0.00029 6.2E-09 67.8 19.5 46 44-92 70-117 (359)
43 COG3866 PelB Pectate lyase [Ca 98.1 0.00021 4.6E-09 65.8 16.9 123 148-270 94-229 (345)
44 smart00656 Amb_all Amb_all dom 98.1 0.00019 4.1E-09 63.6 15.7 99 171-270 33-144 (190)
45 PLN02170 probable pectinestera 98.1 0.0015 3.3E-08 65.9 23.7 47 44-92 236-284 (529)
46 PLN02304 probable pectinestera 98.0 0.0031 6.7E-08 61.1 22.1 46 44-92 86-133 (379)
47 PLN02708 Probable pectinestera 97.9 0.0017 3.7E-08 66.4 21.2 186 44-300 252-449 (553)
48 PLN02933 Probable pectinestera 97.9 0.0034 7.4E-08 63.6 22.9 46 44-92 229-276 (530)
49 PLN02916 pectinesterase family 97.9 0.004 8.7E-08 62.6 22.9 46 44-92 198-248 (502)
50 PLN02432 putative pectinestera 97.9 0.003 6.4E-08 59.5 20.7 46 44-92 22-69 (293)
51 smart00656 Amb_all Amb_all dom 97.9 0.00082 1.8E-08 59.5 15.7 118 149-276 34-173 (190)
52 PLN02506 putative pectinestera 97.9 0.0037 7.9E-08 63.7 22.0 46 44-92 243-290 (537)
53 PF01095 Pectinesterase: Pecti 97.9 0.0014 3.1E-08 62.1 17.8 47 43-92 10-58 (298)
54 PRK10531 acyl-CoA thioesterase 97.8 0.0034 7.4E-08 61.6 20.7 53 37-92 87-141 (422)
55 PLN02201 probable pectinestera 97.8 0.007 1.5E-07 61.4 23.3 46 44-92 217-264 (520)
56 PLN02713 Probable pectinestera 97.8 0.002 4.4E-08 66.0 19.3 149 44-238 261-419 (566)
57 PLN02990 Probable pectinestera 97.8 0.0074 1.6E-07 62.1 22.9 46 44-92 270-317 (572)
58 PF00544 Pec_lyase_C: Pectate 97.8 0.00043 9.4E-09 61.8 12.2 99 171-270 38-158 (200)
59 PF12708 Pectate_lyase_3: Pect 97.8 0.0028 6E-08 57.1 17.9 122 158-304 95-224 (225)
60 PLN02416 probable pectinestera 97.8 0.0034 7.5E-08 64.0 20.0 46 44-92 241-288 (541)
61 PLN03043 Probable pectinestera 97.7 0.0042 9E-08 63.5 20.2 46 44-92 234-284 (538)
62 PLN02745 Putative pectinestera 97.7 0.0047 1E-07 63.7 20.3 145 44-238 296-451 (596)
63 PLN02488 probable pectinestera 97.7 0.0083 1.8E-07 60.2 21.3 47 43-92 207-255 (509)
64 PLN02484 probable pectinestera 97.7 0.012 2.5E-07 60.8 22.9 47 44-92 283-331 (587)
65 PLN02301 pectinesterase/pectin 97.7 0.0051 1.1E-07 62.8 19.9 46 44-92 247-294 (548)
66 PLN02995 Probable pectinestera 97.6 0.0054 1.2E-07 62.6 19.4 46 44-92 234-283 (539)
67 PLN02468 putative pectinestera 97.6 0.0087 1.9E-07 61.5 20.9 149 44-238 269-424 (565)
68 PLN02217 probable pectinestera 97.6 0.0054 1.2E-07 63.8 19.4 207 44-300 261-486 (670)
69 PLN02313 Pectinesterase/pectin 97.6 0.007 1.5E-07 62.5 19.6 46 44-92 286-333 (587)
70 COG3420 NosD Nitrous oxidase a 97.6 0.0028 6E-08 59.5 14.9 113 110-238 123-235 (408)
71 PLN02314 pectinesterase 97.6 0.0071 1.5E-07 62.5 19.2 46 44-92 289-336 (586)
72 PLN02197 pectinesterase 97.4 0.037 8E-07 57.1 21.4 151 44-238 286-443 (588)
73 PF00544 Pec_lyase_C: Pectate 97.1 0.009 1.9E-07 53.4 12.4 116 152-277 43-188 (200)
74 PF12218 End_N_terminal: N ter 96.5 0.0025 5.4E-08 44.2 2.8 38 36-76 1-38 (67)
75 COG4677 PemB Pectin methyleste 96.4 0.2 4.3E-06 47.1 15.3 46 43-92 92-141 (405)
76 PF01696 Adeno_E1B_55K: Adenov 96.2 1.4 3E-05 42.9 23.8 168 30-240 45-220 (386)
77 PF03211 Pectate_lyase: Pectat 95.6 0.45 9.7E-06 42.6 13.5 40 196-237 75-115 (215)
78 PF03211 Pectate_lyase: Pectat 95.1 2.4 5.1E-05 38.0 18.2 138 147-294 55-194 (215)
79 PF01696 Adeno_E1B_55K: Adenov 94.2 5.9 0.00013 38.7 19.6 85 175-274 118-204 (386)
80 PLN02480 Probable pectinestera 93.7 2.9 6.2E-05 40.5 14.9 111 176-300 130-252 (343)
81 TIGR03804 para_beta_helix para 92.3 0.23 4.9E-06 32.5 3.7 38 173-215 3-40 (44)
82 PLN02176 putative pectinestera 91.1 7 0.00015 37.8 13.8 113 176-300 120-246 (340)
83 TIGR03804 para_beta_helix para 91.0 0.44 9.6E-06 31.0 4.0 40 198-238 1-40 (44)
84 PF14592 Chondroitinas_B: Chon 90.9 0.88 1.9E-05 45.0 7.7 53 256-308 274-330 (425)
85 PRK10123 wcaM putative colanic 90.6 1.3 2.7E-05 41.2 7.8 78 198-278 261-357 (464)
86 PF07602 DUF1565: Protein of u 89.6 12 0.00027 34.4 13.5 104 172-307 91-195 (246)
87 PLN02698 Probable pectinestera 88.9 7 0.00015 39.9 12.5 40 205-246 298-337 (497)
88 PLN02468 putative pectinestera 88.8 6 0.00013 41.1 12.1 114 176-301 343-461 (565)
89 PF09251 PhageP22-tail: Salmon 88.8 19 0.00041 35.5 14.5 13 149-161 169-181 (549)
90 PRK10531 acyl-CoA thioesterase 88.7 22 0.00047 35.4 15.3 86 204-300 237-336 (422)
91 PF09251 PhageP22-tail: Salmon 86.3 13 0.00027 36.7 11.7 57 228-300 311-367 (549)
92 PLN02197 pectinesterase 86.3 16 0.00035 38.1 13.4 115 175-301 361-481 (588)
93 PLN02773 pectinesterase 86.0 21 0.00045 34.2 13.2 114 175-301 99-213 (317)
94 PLN02713 Probable pectinestera 85.9 32 0.0007 35.8 15.4 112 177-300 339-455 (566)
95 PLN03043 Probable pectinestera 85.2 41 0.00089 34.8 15.7 114 176-301 311-429 (538)
96 PLN02313 Pectinesterase/pectin 82.3 52 0.0011 34.4 15.2 113 177-301 361-478 (587)
97 PLN02217 probable pectinestera 81.9 65 0.0014 34.2 15.7 113 177-301 336-453 (670)
98 PLN02933 Probable pectinestera 80.4 75 0.0016 32.8 16.3 113 176-300 303-420 (530)
99 PLN02506 putative pectinestera 79.9 79 0.0017 32.7 15.5 113 175-299 316-433 (537)
100 PLN02416 probable pectinestera 79.5 82 0.0018 32.7 15.6 113 176-300 315-432 (541)
101 PLN02314 pectinesterase 78.7 91 0.002 32.7 15.7 114 176-301 363-481 (586)
102 PLN02301 pectinesterase/pectin 77.6 93 0.002 32.3 16.0 113 176-300 321-438 (548)
103 PLN02488 probable pectinestera 76.7 93 0.002 31.8 16.4 114 176-301 282-400 (509)
104 PLN02916 pectinesterase family 75.9 99 0.0021 31.7 15.8 113 176-300 275-392 (502)
105 PLN02201 probable pectinestera 75.8 1E+02 0.0022 31.8 17.6 113 176-300 291-408 (520)
106 PF07172 GRP: Glycine rich pro 75.2 2.3 5E-05 33.0 2.2 20 1-20 1-21 (95)
107 PLN02745 Putative pectinestera 73.4 1.3E+02 0.0027 31.7 16.1 114 176-301 370-488 (596)
108 PF08480 Disaggr_assoc: Disagg 72.1 68 0.0015 28.1 11.0 15 227-241 63-77 (198)
109 PF08480 Disaggr_assoc: Disagg 71.6 32 0.00069 30.1 8.4 62 205-271 2-77 (198)
110 PLN02698 Probable pectinestera 70.7 1E+02 0.0022 31.6 13.3 139 152-300 267-419 (497)
111 PLN02990 Probable pectinestera 70.7 1.4E+02 0.0031 31.2 16.2 114 176-301 345-463 (572)
112 PLN02995 Probable pectinestera 70.5 1.4E+02 0.003 31.0 16.9 112 177-300 311-427 (539)
113 PLN02170 probable pectinestera 68.4 1.5E+02 0.0033 30.6 16.4 115 175-301 310-428 (529)
114 PLN02484 probable pectinestera 67.4 1.7E+02 0.0036 30.8 16.8 113 176-300 358-475 (587)
115 PLN02708 Probable pectinestera 63.6 1.9E+02 0.0042 30.1 16.0 75 205-299 330-410 (553)
116 COG4531 ZnuA ABC-type Zn2+ tra 55.4 19 0.00041 33.5 4.3 61 1-75 2-67 (318)
117 smart00710 PbH1 Parallel beta- 54.1 15 0.00033 19.7 2.5 20 258-277 2-22 (26)
118 PF05984 Cytomega_UL20A: Cytom 52.7 24 0.00052 26.3 3.7 32 1-32 1-33 (100)
119 TIGR02001 gcw_chp conserved hy 51.2 5.7 0.00012 36.6 0.3 22 32-53 42-63 (243)
120 COG4704 Uncharacterized protei 49.4 63 0.0014 26.6 6.0 35 42-77 59-95 (151)
121 PF05342 Peptidase_M26_N: M26 44.1 40 0.00086 31.0 4.6 30 38-78 136-166 (250)
122 smart00722 CASH Domain present 40.6 1.1E+02 0.0023 24.6 6.5 67 152-221 73-143 (146)
123 PLN02671 pectinesterase 37.0 4.1E+02 0.0089 26.0 13.6 135 149-300 148-295 (359)
124 PF01095 Pectinesterase: Pecti 32.1 4.5E+02 0.0097 24.9 14.7 166 175-368 84-265 (298)
125 COG3054 Predicted transcriptio 28.8 54 0.0012 27.7 2.7 20 1-20 1-20 (184)
126 KOG1777 Putative Zn-finger pro 28.1 6.4E+02 0.014 25.4 11.7 220 46-303 33-291 (625)
127 PLN02304 probable pectinestera 26.7 6.3E+02 0.014 24.9 17.4 112 176-299 160-286 (379)
128 smart00722 CASH Domain present 26.4 3.3E+02 0.0071 21.6 8.8 13 154-166 44-56 (146)
129 PLN02665 pectinesterase family 26.3 6.3E+02 0.014 24.8 12.8 19 149-167 148-166 (366)
130 PHA00672 hypothetical protein 23.4 1.4E+02 0.003 24.4 3.9 25 62-92 50-75 (152)
131 PF01456 Mucin: Mucin-like gly 23.0 54 0.0012 27.1 1.8 18 1-18 1-18 (143)
132 PF10162 G8: G8 domain; Inter 22.8 2.3E+02 0.0049 22.9 5.4 54 60-126 11-65 (125)
133 COG5510 Predicted small secret 22.3 99 0.0021 20.2 2.4 9 44-52 31-39 (44)
134 PRK10081 entericidin B membran 22.2 1E+02 0.0022 20.6 2.5 11 43-53 30-40 (48)
135 PRK09752 adhesin; Provisional 21.5 1.3E+03 0.028 26.6 15.5 12 205-216 180-191 (1250)
136 CHL00132 psaF photosystem I su 21.3 1.2E+02 0.0026 26.3 3.5 12 43-54 33-44 (185)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.7e-79 Score=593.18 Aligned_cols=391 Identities=61% Similarity=1.070 Sum_probs=351.5
Q ss_pred CchhhhHHHHHHHHHHHHhhhhccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEeeC
Q 046411 1 MAAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRG 80 (392)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~ 80 (392)
|.+.-+.+.+++.+|.+. .++..+++.+||+||||++||.+|||+|||+|+++||++.+|++|+||+|+|++++|.|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~g 79 (394)
T PLN02155 1 MTKSAITFPLLFTLLTFI-DVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGG 79 (394)
T ss_pred CccceeehhHHHHHHHHh-hccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcc
Confidence 444444444444433333 2445667899999999999999999999999997679998999999999999999999999
Q ss_pred CCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEE
Q 046411 81 PCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVS 160 (392)
Q Consensus 81 ~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 160 (392)
||||+++|+++|+|+++.++..|.....|+.+.+.+|+.|.||+|||+|+.||.....+...+.+|+++.|.+|++++|+
T Consensus 80 pcksnv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~ 159 (394)
T PLN02155 80 PCKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIIS 159 (394)
T ss_pred cCCCCceEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEE
Confidence 99999999999999999888878665679999999999999999999999999876554555678899999999999999
Q ss_pred eEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecC
Q 046411 161 GLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPG 240 (392)
Q Consensus 161 ~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~ 240 (392)
+++++|+|.|++++..|+|++|++++|.++.+++|+||||+..|+||+|+||+|.++||||+++++++||+|+||.|..+
T Consensus 160 gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~G 239 (394)
T PLN02155 160 GVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPG 239 (394)
T ss_pred CeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCC
Q 046411 241 HGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNK 320 (392)
Q Consensus 241 ~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~ 320 (392)
||++|||+|++...+.++||+++||++.++.+|++||+|.+.++|.|+||+|+|++|+++++||.|.+.|++....|+..
T Consensus 240 hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~ 319 (394)
T PLN02155 240 HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNE 319 (394)
T ss_pred ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCC
Confidence 99999999877557889999999999999999999999976578999999999999999999999999998755556655
Q ss_pred CCceeEEeEEEEeEEEEeCCCceEEEeeCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 046411 321 NSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMN-KAATSTCKNIGGTISGVIMPRSCL 392 (392)
Q Consensus 321 ~~~~~i~nitf~ni~~~~~~~~~~~i~~~~~~~i~~i~f~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 392 (392)
.+.+.|+||+|+||+++.....++.+.|++..||+||+|+||+++..+ .++..+|++++|...++.+|+.||
T Consensus 320 ~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 320 YSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred CCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence 667899999999999998766789999999999999999999999875 556889999999999999999997
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=3.1e-76 Score=579.22 Aligned_cols=366 Identities=41% Similarity=0.776 Sum_probs=335.2
Q ss_pred CceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCce-EEEEEEEeeCCCCcceEEEEeeEEEecCCccccC
Q 046411 26 AASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGR-YLIKNAVFRGPCKSRITVQISGTIVAPNDYRALG 104 (392)
Q Consensus 26 ~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~-Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~ 104 (392)
++++||+||||++||.+|||+|||+||++||++.+|++|+||+|. |+++++.|.+||||+++|+++|+|+++.++..|+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHcc
Confidence 468999999999999999999999999977998889999999995 9999999999999999999999999999988887
Q ss_pred C--CCcEEEEEeeeEEEEEc-cEEeCCCCceeeccC---CCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEecee
Q 046411 105 K--SDRWILFIKVDRLSIIG-GTLDGKGAGFWACRK---SGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCN 178 (392)
Q Consensus 105 ~--~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~---~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~ 178 (392)
. .+.||.+.+++|++|.| |+|||+|+.||.... ...+...||+++.|.+|+|++|++++++|+|.|++++..|+
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~ 209 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCR 209 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccC
Confidence 4 35799999999999999 999999999996421 11234568999999999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeE
Q 046411 179 NVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVE 258 (392)
Q Consensus 179 nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ 258 (392)
|++|++++|.++...+|+||||+.+|+||+|+||+|+++||||+++++++||+|+||.|..+||++|||+|++...+.++
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~ 289 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVR 289 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEE
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999876678899
Q ss_pred eEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEe
Q 046411 259 NVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTS 338 (392)
Q Consensus 259 ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~ 338 (392)
||+|+||++.++.+|++||+|++ ++|.|+||+|+|++|+++.+||.|.+.|+.....|+.+.+.+.|+||+|+||+++.
T Consensus 290 nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~ 368 (443)
T PLN02793 290 DITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS 368 (443)
T ss_pred EEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence 99999999999999999999975 67899999999999999999999999997644455555677899999999999998
Q ss_pred CCCceEEEeeCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 046411 339 ATPKAVAFDCSSSNPCRGIKLQDIKLTYMN-KAATSTCKNIGGTISGVIMPRSCL 392 (392)
Q Consensus 339 ~~~~~~~i~~~~~~~i~~i~f~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 392 (392)
....++.+.|+++.||+||+|+||+|...+ ......|.++++...|...|+.||
T Consensus 369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccc
Confidence 666789999999999999999999999864 556789999999999988888996
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=5.7e-75 Score=567.69 Aligned_cols=364 Identities=42% Similarity=0.784 Sum_probs=333.0
Q ss_pred hhccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCc-eEEEEEEEeeCCCCcceEEEEeeEEEecCC
Q 046411 21 ITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKG-RYLIKNAVFRGPCKSRITVQISGTIVAPND 99 (392)
Q Consensus 21 ~~~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G-~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~ 99 (392)
.++++.+++||+||||++||.+|||+|||+|+++||++.+|++|+||+| +|+++++.|++|||++++|+++|+|+++.+
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 4445688999999999999999999999999987799888899999999 599999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEeeeEEEEEc---cEEeCCCCceeeccCC---CCCCCCCceEEEEEeeCceEEEeEEEecCCccEEE
Q 046411 100 YRALGKSDRWILFIKVDRLSIIG---GTLDGKGAGFWACRKS---GRNCPVGTRSITINSANNVIVSGLTSINSQLSHLV 173 (392)
Q Consensus 100 ~~~~~~~~~~i~~~~~~nv~I~G---G~idg~g~~~~~~~~~---~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~ 173 (392)
..+|+....||.+.+++||+|.| |+|||+|+.||..... ..++..||+++.|.+|+|++|++++++|+|.|+++
T Consensus 140 ~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~ 219 (431)
T PLN02218 140 RSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQIS 219 (431)
T ss_pred hhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEE
Confidence 99998777899999999999999 9999999999974321 12345799999999999999999999999999999
Q ss_pred EeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCC
Q 046411 174 ISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLN 253 (392)
Q Consensus 174 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~ 253 (392)
+..|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||.|..+||++|||++.+..
T Consensus 220 ~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~ 299 (431)
T PLN02218 220 IEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNS 299 (431)
T ss_pred EEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCC
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEe
Q 046411 254 EDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRN 333 (392)
Q Consensus 254 ~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~n 333 (392)
.+.++||+|+||++.++.+|++||+|++ ++|.|+||+|+|++|+++++||.|.+.|++.. .|+.+.+.+.|+||+|+|
T Consensus 300 ~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~N 377 (431)
T PLN02218 300 KAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYRN 377 (431)
T ss_pred CceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEEe
Confidence 6789999999999999999999999974 77999999999999999999999999998633 355556778999999999
Q ss_pred EEEEeCCCceEEEeeCCCCceecEEEEeEEEEecCCccceeeecccccccceecCCCC
Q 046411 334 IQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVIMPRSC 391 (392)
Q Consensus 334 i~~~~~~~~~~~i~~~~~~~i~~i~f~ni~i~~~~~~~~~~c~~~~~~~~~~~~~~~~ 391 (392)
|+++.....++.+.|+++.||+||+|+||+|.+. ...|+++++...|+.+| .|
T Consensus 378 I~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~~~p-~c 430 (431)
T PLN02218 378 ISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGAVSP-QC 430 (431)
T ss_pred EEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEcccCCC-CC
Confidence 9999876678999999999999999999999863 45799999999998776 67
No 4
>PLN03010 polygalacturonase
Probab=100.00 E-value=8.9e-74 Score=554.31 Aligned_cols=355 Identities=41% Similarity=0.810 Sum_probs=327.7
Q ss_pred cCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCC-CcEEEEcCc-eEEEEEEEeeCCCC-cceEEEEeeEEEecCCc
Q 046411 24 SNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQ-ASTIVVPKG-RYLIKNAVFRGPCK-SRITVQISGTIVAPNDY 100 (392)
Q Consensus 24 ~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~-g~~v~iP~G-~Y~~~~l~l~~~~k-s~v~l~~~G~l~~~~~~ 100 (392)
.+++.+||+||||++||.+|||+|||+|++++|+..+ +++|+|||| +|+++++.|++||| ++++|+++|+|+++.+.
T Consensus 42 ~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~ 121 (409)
T PLN03010 42 VNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNI 121 (409)
T ss_pred CCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCCh
Confidence 4678999999999999999999999999987775433 379999999 79999999988877 57999999999999999
Q ss_pred cccCC--CCcEEEEEeeeEEEEEc-cEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEece
Q 046411 101 RALGK--SDRWILFIKVDRLSIIG-GTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSC 177 (392)
Q Consensus 101 ~~~~~--~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~ 177 (392)
..|+. ...|+.+.+++|++|.| |+|||+|+.||. ++.|.+|+|++|++++++++|.|++++..|
T Consensus 122 ~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~ 188 (409)
T PLN03010 122 VAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIKTC 188 (409)
T ss_pred hhccCCCCcceEEEecccccEEeeceEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEecc
Confidence 88863 35789999999999999 999999999993 689999999999999999999999999999
Q ss_pred ecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCe
Q 046411 178 NNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGV 257 (392)
Q Consensus 178 ~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i 257 (392)
+|++|++++|.++..++|+||||+..|+||+|+||+|+++||||++|+++.++.|+++.|..+||++|||++.+.....+
T Consensus 189 ~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 189 NYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKV 268 (409)
T ss_pred ccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCee
Confidence 99999999999988789999999999999999999999999999999999999999999999999999999887666779
Q ss_pred EeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEE
Q 046411 258 ENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGT 337 (392)
Q Consensus 258 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~ 337 (392)
+||+|+||++.++.+|++||+|.+ ++|.|+||+|+|++|+++++||.|.+.|+.....|..+.+...|+||+|+||+++
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT 347 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGT 347 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEE
Confidence 999999999999999999999974 6799999999999999999999999999875555666678899999999999999
Q ss_pred eCCCceEEEeeCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 046411 338 SATPKAVAFDCSSSNPCRGIKLQDIKLTYMN-KAATSTCKNIGGTISGVIMPRSCL 392 (392)
Q Consensus 338 ~~~~~~~~i~~~~~~~i~~i~f~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 392 (392)
...+.++.+.|++..+|+||+|+||++..++ ..+...|.++++...++.+|+.||
T Consensus 348 ~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 348 TSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred eCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 8777899999999999999999999999875 567899999999999999999997
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1e-74 Score=563.67 Aligned_cols=364 Identities=40% Similarity=0.744 Sum_probs=329.7
Q ss_pred hhccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCce-EEEEEEEeeCCCCcc-eEEEEeeEEEecC
Q 046411 21 ITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGR-YLIKNAVFRGPCKSR-ITVQISGTIVAPN 98 (392)
Q Consensus 21 ~~~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~-Y~~~~l~l~~~~ks~-v~l~~~G~l~~~~ 98 (392)
+....++.+||++|||++||.+|||+|||+|+++||++.+|++|+||+|+ |+++++.|.+|||+. ++++++|+++++.
T Consensus 16 ~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~ 95 (456)
T PLN03003 16 QIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPS 95 (456)
T ss_pred eeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCc
Confidence 55567889999999999999999999999999988998889999999995 899999999988874 8888899998865
Q ss_pred CccccCC-CCcEEEEEeeeEEEEEc-cEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEec
Q 046411 99 DYRALGK-SDRWILFIKVDRLSIIG-GTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISS 176 (392)
Q Consensus 99 ~~~~~~~-~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~ 176 (392)
. ..|.. ...||.+.+++|++|.| |+|||+|+.||... ..||+++.|.+|+|++|+|++++|+|.|++++..
T Consensus 96 ~-~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~ 168 (456)
T PLN03003 96 K-GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISE 168 (456)
T ss_pred c-ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEec
Confidence 4 33432 36799999999999999 99999999999642 3589999999999999999999999999999999
Q ss_pred eecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCC
Q 046411 177 CNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDG 256 (392)
Q Consensus 177 ~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~ 256 (392)
|+|++|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||.|..+||++|||++++.+...
T Consensus 169 c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~ 248 (456)
T PLN03003 169 CNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETAT 248 (456)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcce
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999998766678
Q ss_pred eEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCC--CCCCCCCceeEEeEEEEeE
Q 046411 257 VENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQ--GCPNKNSGVKISQVTYRNI 334 (392)
Q Consensus 257 i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~nitf~ni 334 (392)
++||+|+||++.++.+|++||+|++ ++|.++||+|+|++|+++++||.|.+.|++... .+....+.+.|+||+|+||
T Consensus 249 V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI 327 (456)
T PLN03003 249 VENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNF 327 (456)
T ss_pred EEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeE
Confidence 9999999999999999999999975 679999999999999999999999999975321 2333456789999999999
Q ss_pred EEEeCCCceEEEeeCCCCceecEEEEeEEEEecC----CccceeeecccccccceecCCCCC
Q 046411 335 QGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMN----KAATSTCKNIGGTISGVIMPRSCL 392 (392)
Q Consensus 335 ~~~~~~~~~~~i~~~~~~~i~~i~f~ni~i~~~~----~~~~~~c~~~~~~~~~~~~~~~~~ 392 (392)
+++.....++.+.|++..||+||+|+||+++..+ ..+.+.|.++++...++.+|+.||
T Consensus 328 ~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 328 IGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 9988777889999999999999999999998762 346899999999999999998997
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=5.6e-74 Score=557.20 Aligned_cols=366 Identities=40% Similarity=0.798 Sum_probs=328.8
Q ss_pred CCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccC
Q 046411 25 NAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALG 104 (392)
Q Consensus 25 ~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~ 104 (392)
.++++||+||||++||.+|||+|||+|+++||++.+|++|+||+|+|+++++.|++|||+...|.+ +|+++.+.++|+
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y~ 110 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRYG 110 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHCC
Confidence 356899999999999999999999999987799888899999999999999999988865444444 999999999998
Q ss_pred CCCcEEEEEeeeEEEEEc-cEEeCCCCceeeccCC--CCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEE
Q 046411 105 KSDRWILFIKVDRLSIIG-GTLDGKGAGFWACRKS--GRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVI 181 (392)
Q Consensus 105 ~~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~--~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~ 181 (392)
....|+.+..++||+|.| |+|||+|+.||..... ......||+++.|.+|+++.|++++++|+|.|++++..|+|++
T Consensus 111 ~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~ 190 (404)
T PLN02188 111 SGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFK 190 (404)
T ss_pred CccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEE
Confidence 767899888899999999 9999999999974321 2344679999999999999999999999999999999999999
Q ss_pred EEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeEeEE
Q 046411 182 VRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVT 261 (392)
Q Consensus 182 i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~ 261 (392)
|++++|.++.+++|+||||+..|+||+|+||+|.++||||++|++++||+|+|+.|..+||++|||.|++...+.++||+
T Consensus 191 i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~ 270 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLV 270 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEE
Confidence 99999999888899999999999999999999999999999999999999999999999999999998876678899999
Q ss_pred EEeeEEeCCceeEEEEeecCC-CCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeCC
Q 046411 262 LTNSVFTGSDNGVRIKSWARP-SRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSAT 340 (392)
Q Consensus 262 i~n~~~~~~~~gi~i~~~~~~-~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~~ 340 (392)
|+||++.++.+|++||+|.+. ++|.++||+|+|++|+++++||.|.+.|++.....+...+.+.|+||+|+||+++...
T Consensus 271 v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 271 VRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred EEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecC
Confidence 999999999999999999753 4589999999999999999999999999753321222345689999999999999876
Q ss_pred CceEEEeeCCCCceecEEEEeEEEEecC--CccceeeecccccccceecCCCCC
Q 046411 341 PKAVAFDCSSSNPCRGIKLQDIKLTYMN--KAATSTCKNIGGTISGVIMPRSCL 392 (392)
Q Consensus 341 ~~~~~i~~~~~~~i~~i~f~ni~i~~~~--~~~~~~c~~~~~~~~~~~~~~~~~ 392 (392)
..++.+.|+++.||+||+|+||++..++ ....+.|+++++...|..+|++|+
T Consensus 351 ~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 351 QVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred ceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 6789999999999999999999998873 445799999999999999999996
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=4.6e-57 Score=432.69 Aligned_cols=322 Identities=38% Similarity=0.684 Sum_probs=276.6
Q ss_pred hhcCCCcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEEc-cEEeCCCCceee
Q 046411 56 CRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIG-GTLDGKGAGFWA 134 (392)
Q Consensus 56 ~~~~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~~~ 134 (392)
|++.++++|++|+|+|+++++.|++++++++++.++|++.++.....+.. ..||.+.+++|++|.| |+|||+|+.||.
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 66677889999999999999888544457899999999988855555544 7899999999999999 999999999997
Q ss_pred ccCC-CCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceE
Q 046411 135 CRKS-GRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGT 213 (392)
Q Consensus 135 ~~~~-~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~ 213 (392)
.... ......||+++.|.+|++++|++++++++|.|++++..|+|++|++++|.++...+|+|||++.+|+||+|+||+
T Consensus 80 ~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~ 159 (326)
T PF00295_consen 80 GSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCF 159 (326)
T ss_dssp SCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEE
T ss_pred cccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEee
Confidence 5432 135567999999999999999999999999999999999999999999999877799999999999999999999
Q ss_pred EecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEE
Q 046411 214 IQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQ 293 (392)
Q Consensus 214 i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ 293 (392)
++++||||++|+++.||+|+||+|..+||++||+++.......++||+|+||++.++.+|++||+++ +++|.|+||+|+
T Consensus 160 i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~-~~~G~v~nI~f~ 238 (326)
T PF00295_consen 160 IDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP-GGGGYVSNITFE 238 (326)
T ss_dssp EESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET-TTSEEEEEEEEE
T ss_pred cccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec-ccceEEeceEEE
Confidence 9999999999998889999999999999999999976543346999999999999999999999987 478999999999
Q ss_pred EEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeCCCceEEEeeCCCCceecEEEEeEEEEecCCccce
Q 046411 294 NIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATS 373 (392)
Q Consensus 294 ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~~~~~~~i~~~~~~~i~~i~f~ni~i~~~~~~~~~ 373 (392)
|++|+++.+||.|.+.|.+ ...++.++..+.|+||+|+||+++.....++.+.|.+..+|+||+|+||+|++ + ....
T Consensus 239 ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g-~~~~ 315 (326)
T PF00295_consen 239 NITMENVKYPIFIDQDYRD-GGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G-KKPA 315 (326)
T ss_dssp EEEEEEESEEEEEEEEECT-TEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S-BSES
T ss_pred EEEecCCceEEEEEecccc-ccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C-CcCe
Confidence 9999999999999999876 22333335667999999999999998767999999999999999999999999 4 6678
Q ss_pred eeecccccc
Q 046411 374 TCKNIGGTI 382 (392)
Q Consensus 374 ~c~~~~~~~ 382 (392)
.|+++....
T Consensus 316 ~c~nv~~~~ 324 (326)
T PF00295_consen 316 QCKNVPSGI 324 (326)
T ss_dssp EEBSCCTT-
T ss_pred EEECCCCCC
Confidence 999987654
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.6e-42 Score=337.49 Aligned_cols=273 Identities=32% Similarity=0.520 Sum_probs=233.0
Q ss_pred cCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEeeCCCCcceEEEEe-e-EEEecCCcc
Q 046411 24 SNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQIS-G-TIVAPNDYR 101 (392)
Q Consensus 24 ~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~-G-~l~~~~~~~ 101 (392)
+..+.++|.+|||++||.+|+++|||+||++ |+..+|++|+||||+|+.++|.| ||+++|+++ | +|+.+.++.
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~a~Gg~V~lPaGtylsg~l~L----KS~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CASAGGGTVLLPAGTYLSGPLFL----KSNVTLHLAEGATLLASSNPK 152 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHHHh-hhhhcCceEEECCceeEeeeEEE----ecccEEEecCCceeeCCCChh
Confidence 4567899999999999999999999999986 78889999999999999999999 799999995 7 999998888
Q ss_pred ccCC--------CC-----------------------cEEEEEeeeEEE-EEc-cEEeCCC----CceeeccC--CCCCC
Q 046411 102 ALGK--------SD-----------------------RWILFIKVDRLS-IIG-GTLDGKG----AGFWACRK--SGRNC 142 (392)
Q Consensus 102 ~~~~--------~~-----------------------~~i~~~~~~nv~-I~G-G~idg~g----~~~~~~~~--~~~~~ 142 (392)
+|+. .. ..+.....+|.. |.| ++++|++ ..||.... .....
T Consensus 153 ~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~ 232 (542)
T COG5434 153 DYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIG 232 (542)
T ss_pred hccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhccc
Confidence 8873 11 122222345666 778 8888864 22664333 11111
Q ss_pred C--CCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCce
Q 046411 143 P--VGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDC 220 (392)
Q Consensus 143 ~--~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~ 220 (392)
. .||.++.+..|.||+++++++.+++.|.+++..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.++|||
T Consensus 233 ~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 233 GKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDC 311 (542)
T ss_pred ccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCce
Confidence 1 58999999999999999999999999999999999999999999987644 99999999999999999999999999
Q ss_pred EEeCCC-----------ceeEEEEeeEEecCce-eEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEE
Q 046411 221 ISVGRG-----------TRNLHMSNIKCGPGHG-VSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVR 288 (392)
Q Consensus 221 i~~~~~-----------s~ni~I~n~~~~~~~g-i~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~ 288 (392)
|++|++ ++|+.|+||++..+|| +.+|++ ..++++||++|||.|.++..||+||+..+ .+|.++
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v~ 386 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGVR 386 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cceeEE
Confidence 999985 5899999999999987 888998 57899999999999999999999999864 669999
Q ss_pred ceEEEEEEEecCCccEEEE
Q 046411 289 NVFFQNIIMRNVKNPILID 307 (392)
Q Consensus 289 nI~~~ni~i~~~~~~i~i~ 307 (392)
||+|+++++.++..+..+.
T Consensus 387 nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 387 NIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEEecccccCcccceeee
Confidence 9999999999986555444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=5.2e-26 Score=218.18 Aligned_cols=247 Identities=17% Similarity=0.253 Sum_probs=188.0
Q ss_pred CCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEeeCCCCcceEEEEe-eEEEecCCcccc
Q 046411 25 NAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQIS-GTIVAPNDYRAL 103 (392)
Q Consensus 25 ~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~-G~l~~~~~~~~~ 103 (392)
+.+.+++++|||++||.+|+|+|||+||++| + .+|++|.+|||+|+.+++.| +++++|.++ |.... .+
T Consensus 34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L----~spltL~G~~gAt~~-----vI 102 (455)
T TIGR03808 34 STLGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRL----PSGAQLIGVRGATRL-----VF 102 (455)
T ss_pred CccCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEE----CCCcEEEecCCcEEE-----EE
Confidence 4567899999999999999999999999974 4 35679999999999999999 588999887 43211 11
Q ss_pred CCCCcEEEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEecee-----
Q 046411 104 GKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCN----- 178 (392)
Q Consensus 104 ~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~----- 178 (392)
.+...++...+++||+|+|-+|++.|..| ..++.+|.+..|++++|+++++.++..|++.+..|+
T Consensus 103 dG~~~lIiai~A~nVTIsGLtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~ 172 (455)
T TIGR03808 103 TGGPSLLSSEGADGIGLSGLTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISG 172 (455)
T ss_pred cCCceEEEEecCCCeEEEeeEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEec
Confidence 22245666666999999999999999755 346778999999999999999999988999999999
Q ss_pred -----------------cEEEEeEEEECCCC--------------------------------CCCCCeeeeeccccEEE
Q 046411 179 -----------------NVIVRNVKFIAPAE--------------------------------SPNTDGIHVESSTGVTI 209 (392)
Q Consensus 179 -----------------nv~i~~~~i~~~~~--------------------------------~~n~DGi~~~~s~nv~I 209 (392)
+++|++.+|....+ ....+||+++.+.+++|
T Consensus 173 N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V 252 (455)
T TIGR03808 173 NTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIV 252 (455)
T ss_pred ceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEE
Confidence 77777777765433 33467888888888888
Q ss_pred EceEEecCC-ceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCC-CCeeE
Q 046411 210 TGGTIQTGD-DCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARP-SRSFV 287 (392)
Q Consensus 210 ~n~~i~~~d-D~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~i 287 (392)
+++.|+..+ |+|-..+ ++|+.|+++.|..-+=.++-.+ | ..+--.|+|+++.+...|+++-.+..+ .-..+
T Consensus 253 ~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym--f----s~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~ 325 (455)
T TIGR03808 253 RGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE--F----AFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVV 325 (455)
T ss_pred ECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE--E----eCCCcEEeccEEecCcceEEEEeecCCceEEEE
Confidence 888888888 8887777 6788888888864322233222 1 122255778888888888888776431 22567
Q ss_pred EceEEEEEEEec
Q 046411 288 RNVFFQNIIMRN 299 (392)
Q Consensus 288 ~nI~~~ni~i~~ 299 (392)
..-.++|++-+.
T Consensus 326 ~gn~irn~~~~~ 337 (455)
T TIGR03808 326 QGNIIRNLIPKR 337 (455)
T ss_pred ecceeeccccCC
Confidence 777788877764
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=2.3e-21 Score=176.51 Aligned_cols=60 Identities=33% Similarity=0.483 Sum_probs=49.6
Q ss_pred eeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEE-EEeeCCCCcceEEEEee
Q 046411 28 SYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKN-AVFRGPCKSRITVQISG 92 (392)
Q Consensus 28 ~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~-l~l~~~~ks~v~l~~~G 92 (392)
.+||+||||+|||.+|||+|||+||+++ ++.+|++||||||+|++.+ +.+ +++++|+++|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~----~s~v~l~G~g 61 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLII----PSNVTLRGAG 61 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----TTEEEEESS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEc----CCCeEEEccC
Confidence 3789999999999999999999999654 6788999999999999987 888 4899999986
No 11
>PLN02793 Probable polygalacturonase
Probab=99.84 E-value=3.1e-18 Score=169.07 Aligned_cols=218 Identities=19% Similarity=0.243 Sum_probs=169.5
Q ss_pred cceEEEEeeEEEecCCccccC------------CCCcEEEEEeeeEEEEEc-cEEeCCCCceeeccCCCCCCCCCceEEE
Q 046411 84 SRITVQISGTIVAPNDYRALG------------KSDRWILFIKVDRLSIIG-GTLDGKGAGFWACRKSGRNCPVGTRSIT 150 (392)
Q Consensus 84 s~v~l~~~G~l~~~~~~~~~~------------~~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~ 150 (392)
++++|.+.|+|...... .|. .+..++.+.+++|++|.| -..+.. . ..+.
T Consensus 143 ~ni~ItG~G~IDG~G~~-ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~--------------~~i~ 204 (443)
T PLN02793 143 NHLTVEGGGTVNGMGHE-WWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---Q--------------MHIA 204 (443)
T ss_pred ceEEEEeceEEECCCcc-cccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---C--------------eEEE
Confidence 67888888888654321 121 123578899999999999 444332 2 2588
Q ss_pred EEeeCceEEEeEEEecC----CccEEEEeceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCC
Q 046411 151 INSANNVIVSGLTSINS----QLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGR 225 (392)
Q Consensus 151 ~~~~~nv~I~~v~i~~~----~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~ 225 (392)
+.+|++++|+++++.++ ..+++++..|+||+|+|++|.+.+ |+|-+. +|+||+|+||....+. +|++.+
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-GisIGS 278 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-GISIGS 278 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-cEEEec
Confidence 99999999999999873 347999999999999999999864 789986 6899999999998775 688886
Q ss_pred C--------ceeEEEEeeEEecC-ceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCC---------CCeeE
Q 046411 226 G--------TRNLHMSNIKCGPG-HGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARP---------SRSFV 287 (392)
Q Consensus 226 ~--------s~ni~I~n~~~~~~-~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~i 287 (392)
. .+||+|+||++.+. +|++|++... ..+.++||+|+|++|.+..++|.|..++.. ....|
T Consensus 279 lg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I 356 (443)
T PLN02793 279 LGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKV 356 (443)
T ss_pred ccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEE
Confidence 2 58999999999875 7999988621 236799999999999999999999886631 12468
Q ss_pred EceEEEEEEEecC-CccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeC
Q 046411 288 RNVFFQNIIMRNV-KNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSA 339 (392)
Q Consensus 288 ~nI~~~ni~i~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~ 339 (392)
+||+|+|++-+.. +.++.+.- .+..+++||+|+||+++..
T Consensus 357 ~nI~~~nI~Gt~~~~~ai~l~c------------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 357 ENISFVHIKGTSATEEAIKFAC------------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred EeEEEEEEEEEEcccccEEEEe------------CCCCCEeeEEEEeeEEEec
Confidence 9999999998764 34665552 2344899999999998764
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.83 E-value=8e-18 Score=164.36 Aligned_cols=221 Identities=20% Similarity=0.252 Sum_probs=169.6
Q ss_pred cceEEEEeeEEEecCCccccC-----------CCCcEEEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEE
Q 046411 84 SRITVQISGTIVAPNDYRALG-----------KSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITIN 152 (392)
Q Consensus 84 s~v~l~~~G~l~~~~~~~~~~-----------~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~ 152 (392)
.+++|.+.|+|..... ..|. .+..++.+.+++|+.|.|-++... +.| .+++.
T Consensus 122 ~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS--p~w--------------~i~~~ 184 (404)
T PLN02188 122 NGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS--KFF--------------HIALV 184 (404)
T ss_pred eeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC--CCe--------------EEEEE
Confidence 6788888888875442 1221 123578888999999999444322 222 68999
Q ss_pred eeCceEEEeEEEecC----CccEEEEeceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCC--
Q 046411 153 SANNVIVSGLTSINS----QLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGR-- 225 (392)
Q Consensus 153 ~~~nv~I~~v~i~~~----~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~-- 225 (392)
+|++++|+++++.++ -.+++++..|+||+|+|++|.+.+ |+|-+. +++||+|+|+....+ .+|++.+
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~g-hGisiGSlG 258 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPG-HGISVGSLG 258 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCC-CcEEeCCCC
Confidence 999999999999763 237899999999999999999864 789986 578999999999766 4688876
Q ss_pred ------CceeEEEEeeEEecC-ceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecC---------CCCeeEEc
Q 046411 226 ------GTRNLHMSNIKCGPG-HGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWAR---------PSRSFVRN 289 (392)
Q Consensus 226 ------~s~ni~I~n~~~~~~-~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~---------~~~g~i~n 289 (392)
+.+||+|+||++.++ +|++|++.......+.++||+|+|++|.+...+|.|...+. .....|+|
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~n 338 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSD 338 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEe
Confidence 258999999999975 79999885222234679999999999999999999987442 12357999
Q ss_pred eEEEEEEEecC-CccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeC
Q 046411 290 VFFQNIIMRNV-KNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSA 339 (392)
Q Consensus 290 I~~~ni~i~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~ 339 (392)
|+|+|++.+.. +.++.+.- .+..+++||+|+||+++..
T Consensus 339 It~~nI~gt~~~~~a~~l~c------------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 339 IYFKNIRGTSSSQVAVLLKC------------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEEecCceEEEEEE------------CCCCCEeeEEEEeeEEEec
Confidence 99999999765 34555541 2345899999999999764
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.83 E-value=7.5e-18 Score=165.25 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=161.6
Q ss_pred eEEEEEeeCceEEEeEEEecC---Ccc--------EEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEe
Q 046411 147 RSITINSANNVIVSGLTSINS---QLS--------HLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQ 215 (392)
Q Consensus 147 ~~i~~~~~~nv~I~~v~i~~~---~~~--------~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 215 (392)
..|.+.++++++|.|--..+. ..| .+.+..|+|++|+++++.+++. --+++..|+||+|++..|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 479999999999998433332 123 5789999999999999987652 2488999999999999998
Q ss_pred c-----CCceEEeCCCceeEEEEeeEEecCc-eeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCC-CCeeEE
Q 046411 216 T-----GDDCISVGRGTRNLHMSNIKCGPGH-GVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARP-SRSFVR 288 (392)
Q Consensus 216 ~-----~dD~i~~~~~s~ni~I~n~~~~~~~-gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~i~ 288 (392)
+ ..|+|.+.+ ++||+|+||.+.+++ .++|++ +.+||+|+||++... +|+.|.+.... ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGPG-HGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEECC-CCeEEeeccCCCCcceEE
Confidence 7 358998887 789999999999885 599975 358999999999875 89999987421 135799
Q ss_pred ceEEEEEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeCCCceEEEeeC--------------CCCce
Q 046411 289 NVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCS--------------SSNPC 354 (392)
Q Consensus 289 nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~~~~~~~i~~~--------------~~~~i 354 (392)
||+++|+++.+..++++|+++.+ +.+.++||+|+||.+.... .|+.|+.. +...+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~-~pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVE-NPIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCcc-ceEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999998543 2358999999999999875 57777532 12368
Q ss_pred ecEEEEeEEEEecC-Cccceeee
Q 046411 355 RGIKLQDIKLTYMN-KAATSTCK 376 (392)
Q Consensus 355 ~~i~f~ni~i~~~~-~~~~~~c~ 376 (392)
+||+|+||+-+..+ .+..+.|.
T Consensus 320 snI~f~NI~GTs~~~~ai~l~Cs 342 (456)
T PLN03003 320 SKVVFSNFIGTSKSEYGVDFRCS 342 (456)
T ss_pred EeEEEEeEEEEeCccceEEEEeC
Confidence 99999999987654 33334444
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.82 E-value=6.7e-18 Score=166.00 Aligned_cols=197 Identities=22% Similarity=0.319 Sum_probs=157.4
Q ss_pred eEEEEEeeCceEEEe---EEEecC-------------------CccEEEEeceecEEEEeEEEECCCCCCCCCeeeeecc
Q 046411 147 RSITINSANNVIVSG---LTSINS-------------------QLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESS 204 (392)
Q Consensus 147 ~~i~~~~~~nv~I~~---v~i~~~-------------------~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s 204 (392)
..|.+.+.+|++|.| =+|... ....+.+..|+|++|+++++.+++. --+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 358888999999988 333211 1135788899999999999987652 24889999
Q ss_pred ccEEEEceEEec-----CCceEEeCCCceeEEEEeeEEecCc-eeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEe
Q 046411 205 TGVTITGGTIQT-----GDDCISVGRGTRNLHMSNIKCGPGH-GVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKS 278 (392)
Q Consensus 205 ~nv~I~n~~i~~-----~dD~i~~~~~s~ni~I~n~~~~~~~-gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~ 278 (392)
+||+|+|.+|.+ ..|+|.+.+ ++||+|+||.+..++ .++|++ +.+||+|+||++... +|+.|.+
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~G-HGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGPG-HGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEECC-CCEEECc
Confidence 999999999986 468998887 889999999999885 599975 358999999999765 8999988
Q ss_pred ecCC-CCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeCCCceEEEeeC--------
Q 046411 279 WARP-SRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCS-------- 349 (392)
Q Consensus 279 ~~~~-~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~~~~~~~i~~~-------- 349 (392)
.... ..+.|+||+++|+++.+..++++|+++.. +.+.++||+|+||++.... .|+.|+..
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~-~pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVK-NPIIIDQDYCDKSKCT 362 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEccc-ccEEEEeeccCCCCCC
Confidence 6321 24689999999999999999999997432 3459999999999999874 56777532
Q ss_pred ---CCCceecEEEEeEEEEecC
Q 046411 350 ---SSNPCRGIKLQDIKLTYMN 368 (392)
Q Consensus 350 ---~~~~i~~i~f~ni~i~~~~ 368 (392)
....++||+|+||+.+..+
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecC
Confidence 1234999999999998754
No 15
>PLN03010 polygalacturonase
Probab=99.82 E-value=2.5e-17 Score=160.57 Aligned_cols=215 Identities=18% Similarity=0.255 Sum_probs=165.2
Q ss_pred eEEEEEeeCceEEEeEEEecC---Ccc-EEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEec-----C
Q 046411 147 RSITINSANNVIVSGLTSINS---QLS-HLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQT-----G 217 (392)
Q Consensus 147 ~~i~~~~~~nv~I~~v~i~~~---~~~-~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----~ 217 (392)
..+.+.+.+|+.|.|=-..+. ..| .+.+..|+|++|+++++.+++. --+++.+|+||+|+|..+.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCCCCC
Confidence 357889999999998554443 334 5889999999999999987652 23888999999999999986 3
Q ss_pred CceEEeCCCceeEEEEeeEEecCc-eeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCC-CCeeEEceEEEEE
Q 046411 218 DDCISVGRGTRNLHMSNIKCGPGH-GVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARP-SRSFVRNVFFQNI 295 (392)
Q Consensus 218 dD~i~~~~~s~ni~I~n~~~~~~~-gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~i~nI~~~ni 295 (392)
.|+|.+.+ ++||+|+||.+..++ +++|++. ..++.|+++++... +|+.|.+.... ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEee
Confidence 68888877 789999999999885 5999763 35778888888765 89999986431 2256999999999
Q ss_pred EEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeCCCceEEEeeC------------CCCceecEEEEeEE
Q 046411 296 IMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCS------------SSNPCRGIKLQDIK 363 (392)
Q Consensus 296 ~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~~~~~~~i~~~------------~~~~i~~i~f~ni~ 363 (392)
++.+..++++|+++.. +.+.++||+|+||++.... .|+.|+.. ....++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG----------GQGYARNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999998543 2359999999999999874 57777531 12368999999999
Q ss_pred EEecC-Ccccee------eeccccccccee
Q 046411 364 LTYMN-KAATST------CKNIGGTISGVI 386 (392)
Q Consensus 364 i~~~~-~~~~~~------c~~~~~~~~~~~ 386 (392)
-+..+ .+..+. |.+++.+...++
T Consensus 346 GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~ 375 (409)
T PLN03010 346 GTTSNENAITLKCSAITHCKDVVMDDIDVT 375 (409)
T ss_pred EEeCCCccEEEEeCCCCCEeceEEEEEEEE
Confidence 87654 343444 555555544444
No 16
>PLN02155 polygalacturonase
Probab=99.81 E-value=2.7e-17 Score=159.93 Aligned_cols=198 Identities=18% Similarity=0.205 Sum_probs=156.5
Q ss_pred cEEEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCC----ccEEEEeceecEEEE
Q 046411 108 RWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQ----LSHLVISSCNNVIVR 183 (392)
Q Consensus 108 ~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~----~~~i~~~~~~nv~i~ 183 (392)
.++.+.+++|++|.|-++... +. ..+++.+|++++|+++++.++. .+++++..|+||+|+
T Consensus 146 ~~i~~~~~~nv~i~gitl~nS--p~--------------w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~ 209 (394)
T PLN02155 146 RSISFNSAKDVIISGVKSMNS--QV--------------SHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFT 209 (394)
T ss_pred cceeEEEeeeEEEECeEEEcC--CC--------------eEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEE
Confidence 468888999999999444321 22 2689999999999999998743 379999999999999
Q ss_pred eEEEECCCCCCCCCeeeeec-cccEEEEceEEecCCceEEeCCC--------ceeEEEEeeEEecC-ceeEEeeccccCC
Q 046411 184 NVKFIAPAESPNTDGIHVES-STGVTITGGTIQTGDDCISVGRG--------TRNLHMSNIKCGPG-HGVSIGSLGKDLN 253 (392)
Q Consensus 184 ~~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~~dD~i~~~~~--------s~ni~I~n~~~~~~-~gi~iGs~~~~~~ 253 (392)
|++|.+.+ |+|-+.. |+||+|+||.+..+. ++++.+. .+||+|+||.+.+. +|++|++... ..
T Consensus 210 ~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~ 282 (394)
T PLN02155 210 GSTVQTGD-----DCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PS 282 (394)
T ss_pred eeEEecCC-----ceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CC
Confidence 99999864 7888875 789999999998764 6888873 48999999999865 7999988411 12
Q ss_pred CCCeEeEEEEeeEEeCCceeEEEEeecCCC---------CeeEEceEEEEEEEecC-CccEEEEeecCCCCCCCCCCCCc
Q 046411 254 EDGVENVTLTNSVFTGSDNGVRIKSWARPS---------RSFVRNVFFQNIIMRNV-KNPILIDQNYCPNNQGCPNKNSG 323 (392)
Q Consensus 254 ~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~---------~g~i~nI~~~ni~i~~~-~~~i~i~~~~~~~~~~~~~~~~~ 323 (392)
.+.++||+|+|++|.+...+|.|...+... ...|+||+|+|++.... ..++.+.- .+.
T Consensus 283 gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c------------~~~ 350 (394)
T PLN02155 283 TGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVC------------SKS 350 (394)
T ss_pred CEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEe------------CCC
Confidence 467999999999999999999998755311 13689999999998766 34555541 234
Q ss_pred eeEEeEEEEeEEEEeCC
Q 046411 324 VKISQVTYRNIQGTSAT 340 (392)
Q Consensus 324 ~~i~nitf~ni~~~~~~ 340 (392)
.+.+||+|+||+++...
T Consensus 351 ~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 351 SPCTGITLQDIKLTYNK 367 (394)
T ss_pred CCEEEEEEEeeEEEecC
Confidence 48999999999988753
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.80 E-value=1.1e-17 Score=160.58 Aligned_cols=196 Identities=28% Similarity=0.357 Sum_probs=155.3
Q ss_pred CcEEEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCC----ccEEEEeceecEEE
Q 046411 107 DRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQ----LSHLVISSCNNVIV 182 (392)
Q Consensus 107 ~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~----~~~i~~~~~~nv~i 182 (392)
..++.+.+++|++|+|-++.... .| .+.+.+|++++|+++++.++. .+++++..|+|++|
T Consensus 92 p~~i~~~~~~~~~i~~i~~~nsp--~w--------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 92 PRLIRFNNCKNVTIEGITIRNSP--FW--------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp SESEEEEEEEEEEEESEEEES-S--SE--------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred cceeeeeeecceEEEeeEecCCC--ee--------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 46788999999999994443221 22 478899999999999998754 36899999999999
Q ss_pred EeEEEECCCCCCCCCeeeeeccc-cEEEEceEEecCCceEEeCC---C-----ceeEEEEeeEEecC-ceeEEeeccccC
Q 046411 183 RNVKFIAPAESPNTDGIHVESST-GVTITGGTIQTGDDCISVGR---G-----TRNLHMSNIKCGPG-HGVSIGSLGKDL 252 (392)
Q Consensus 183 ~~~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~~dD~i~~~~---~-----s~ni~I~n~~~~~~-~gi~iGs~~~~~ 252 (392)
+|+.|.+.+ |+|-+...+ ||+|+||++..+. ++++.+ + .+||+++||.+.++ +|+.|++.- .
T Consensus 156 ~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~ 227 (326)
T PF00295_consen 156 ENCFIDNGD-----DCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--G 227 (326)
T ss_dssp ESEEEESSS-----ESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--T
T ss_pred EEeeccccc-----CcccccccccceEEEeEEEeccc-cceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--c
Confidence 999999864 789998755 9999999998754 487764 2 37999999999865 789998752 2
Q ss_pred CCCCeEeEEEEeeEEeCCceeEEEEeecCC--------CCeeEEceEEEEEEEecCC-ccEEEEeecCCCCCCCCCCCCc
Q 046411 253 NEDGVENVTLTNSVFTGSDNGVRIKSWARP--------SRSFVRNVFFQNIIMRNVK-NPILIDQNYCPNNQGCPNKNSG 323 (392)
Q Consensus 253 ~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~i~nI~~~ni~i~~~~-~~i~i~~~~~~~~~~~~~~~~~ 323 (392)
..+.++||+|+|+++.+..+++.|...+.. ....|+||+|+|++..... .++.+.. .+.
T Consensus 228 ~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~------------~~~ 295 (326)
T PF00295_consen 228 GGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDC------------SPG 295 (326)
T ss_dssp TSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-------------BTT
T ss_pred cceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEE------------CCc
Confidence 346899999999999999999999875432 2247999999999998765 5666652 123
Q ss_pred eeEEeEEEEeEEEEe
Q 046411 324 VKISQVTYRNIQGTS 338 (392)
Q Consensus 324 ~~i~nitf~ni~~~~ 338 (392)
.+++||+|+||.++.
T Consensus 296 ~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 296 SPCSNITFENVNITG 310 (326)
T ss_dssp SSEEEEEEEEEEEES
T ss_pred CcEEeEEEEeEEEEc
Confidence 489999999999987
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.79 E-value=3.5e-17 Score=158.84 Aligned_cols=274 Identities=19% Similarity=0.225 Sum_probs=155.0
Q ss_pred CcEEEEcCceEEEEE---EEeeCCCCcc-eEEEEe-eEEEecCCccccCCCCcEEEEEeeeEEEEEc-cEEeCCCCceee
Q 046411 61 ASTIVVPKGRYLIKN---AVFRGPCKSR-ITVQIS-GTIVAPNDYRALGKSDRWILFIKVDRLSIIG-GTLDGKGAGFWA 134 (392)
Q Consensus 61 g~~v~iP~G~Y~~~~---l~l~~~~ks~-v~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~~~ 134 (392)
-.+|||+||+|.++. +.|. ++ -+++++ |.+.. +++......+|++|.| |++.|....|..
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----sn~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~A 297 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----SNTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYEA 297 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----TT--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TTB
T ss_pred cceEEeCCceEEeCCCccEEEC----CCccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEec
Confidence 469999999999986 7773 66 488888 64432 3444445689999999 999998876643
Q ss_pred ccCCCC-------CCC-CCceEEE---EEeeCceEEEeEEEecCCccEEEEecee----cEEEEeEEEECCCCCCCCCee
Q 046411 135 CRKSGR-------NCP-VGTRSIT---INSANNVIVSGLTSINSQLSHLVISSCN----NVIVRNVKFIAPAESPNTDGI 199 (392)
Q Consensus 135 ~~~~~~-------~~~-~~~~~i~---~~~~~nv~I~~v~i~~~~~~~i~~~~~~----nv~i~~~~i~~~~~~~n~DGi 199 (392)
...... .++ ..-+++. ...++++.++|++|.++|.|.+.+.+.+ +..|+|.++... |..++||+
T Consensus 298 ~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~~qtDGi 376 (582)
T PF03718_consen 298 DTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGA-WYFQTDGI 376 (582)
T ss_dssp BCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT----
T ss_pred cCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeee-EEeccCCc
Confidence 222100 000 1124454 4456689999999999999999999655 489999999875 45799999
Q ss_pred eeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecC-ce--eEEeeccccCCCCCeEeEEEEeeEEeCCc-----
Q 046411 200 HVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPG-HG--VSIGSLGKDLNEDGVENVTLTNSVFTGSD----- 271 (392)
Q Consensus 200 ~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~-~g--i~iGs~~~~~~~~~i~ni~i~n~~~~~~~----- 271 (392)
.+. ++-+|+||+++..||+|-+.. +++.|+||.+|.. +| +.+|.. ...+++|.|+|+.+...+
T Consensus 377 ~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~ 447 (582)
T PF03718_consen 377 ELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHN 447 (582)
T ss_dssp B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGG
T ss_pred ccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeeccc
Confidence 997 577889999999999997665 4999999999964 33 566543 346999999999998763
Q ss_pred ----eeEEEEe-ec---C-CCC----eeEEceEEEEEEEecCCc-cEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEE
Q 046411 272 ----NGVRIKS-WA---R-PSR----SFVRNVFFQNIIMRNVKN-PILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGT 337 (392)
Q Consensus 272 ----~gi~i~~-~~---~-~~~----g~i~nI~~~ni~i~~~~~-~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~ 337 (392)
.+|.--+ .+ . +.. -.|++.+|+|+++|+.-. .+.|...-. ..+..|+|+.|+...+.
T Consensus 448 ~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn---------~~nl~ikN~~~~~w~~~ 518 (582)
T PF03718_consen 448 NYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN---------YDNLVIKNVHFESWNGL 518 (582)
T ss_dssp CTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE---------EEEEEEEEEEECEET-C
T ss_pred CCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC---------CcceEEEEeecccccCc
Confidence 2332211 11 0 111 368999999999999854 455552110 12234555555544333
Q ss_pred eCCCceEEEeeC------CCCceecEEEEeEEEEec
Q 046411 338 SATPKAVAFDCS------SSNPCRGIKLQDIKLTYM 367 (392)
Q Consensus 338 ~~~~~~~~i~~~------~~~~i~~i~f~ni~i~~~ 367 (392)
.-......+... ......+|.|+|.+|.++
T Consensus 519 ~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 519 DITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp GCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred ccccceeeccccccccccccccccceEEEeEEECCE
Confidence 211222222221 123489999999999885
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.71 E-value=7.1e-15 Score=140.07 Aligned_cols=226 Identities=17% Similarity=0.258 Sum_probs=150.1
Q ss_pred HHHHHHHHhhcCCCcEEEEcCceEEE-EEEEeeCCCCcceEEEEee---EEE-ecCCccccCCCCcEEEEEeeeEEEEEc
Q 046411 48 FLRAWAVACRSSQASTIVVPKGRYLI-KNAVFRGPCKSRITVQISG---TIV-APNDYRALGKSDRWILFIKVDRLSIIG 122 (392)
Q Consensus 48 iq~Ai~~a~~~~~g~~v~iP~G~Y~~-~~l~l~~~~ks~v~l~~~G---~l~-~~~~~~~~~~~~~~i~~~~~~nv~I~G 122 (392)
||+||++| ++|++|+||+|+|.+ +++.+. |++++|+++| +++ +.... .....+... +++|+|+|
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~---~~~Iti~G~g~~~tvid~~~~~----~~~~~i~v~-a~~VtI~~ 69 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLD---ADGVTIRGAGMDETILDFSGQV----GGAEGLLVT-SDDVTLSD 69 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEe---CCCeEEEecCCCccEEecccCC----CCCceEEEE-eCCeEEEe
Confidence 69999977 779999999999987 568774 4789998875 332 21111 113344444 68888887
Q ss_pred cEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEec-------CCccEEEEeceecEEEEeEEEECCCCCCC
Q 046411 123 GTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSIN-------SQLSHLVISSCNNVIVRNVKFIAPAESPN 195 (392)
Q Consensus 123 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~-------~~~~~i~~~~~~nv~i~~~~i~~~~~~~n 195 (392)
-++...+ ...|.+..|++++|+++++.. ...+++.+..|++++|+++++....
T Consensus 70 ltI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~---- 129 (314)
T TIGR03805 70 LAVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGAS---- 129 (314)
T ss_pred eEEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCC----
Confidence 4443221 125777888888888888852 2357888888888888888887642
Q ss_pred CCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEec-CceeEEeeccccCCCCCeEeEEEEeeEEeCCce--
Q 046411 196 TDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGP-GHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDN-- 272 (392)
Q Consensus 196 ~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~-~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~-- 272 (392)
.+||.+..|++++|+++.++....+|.+.. +.++.|+++.+.. ..|+.+-.... ......++++|+++.+.+...
T Consensus 130 d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~-~~~~~s~~~~v~~N~i~~n~~~n 207 (314)
T TIGR03805 130 DAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPG-LPQPGGSNVRVFDNIIFDNNTPN 207 (314)
T ss_pred cccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCC-CCcCCccceEEECCEEECCCCCC
Confidence 248888888888888888888777887764 6788888888774 35666633211 012346788888888876531
Q ss_pred ----eEEEEeecCCCCeeE----EceEEEEEEEecCCc-cEEEE
Q 046411 273 ----GVRIKSWARPSRSFV----RNVFFQNIIMRNVKN-PILID 307 (392)
Q Consensus 273 ----gi~i~~~~~~~~g~i----~nI~~~ni~i~~~~~-~i~i~ 307 (392)
|-.+...+ .+.|.+ .++.|+|.++++... ++.+.
T Consensus 208 ~~~~gn~v~~~~-~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 208 FAPAGSIVASVP-AGTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred CcccCCceecCC-CCcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 11111111 123433 788888888887754 55554
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=1.4e-11 Score=122.99 Aligned_cols=154 Identities=17% Similarity=0.247 Sum_probs=126.4
Q ss_pred CccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCC----ceEEeCCCceeEEEEeeEEecCc-e
Q 046411 168 QLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGD----DCISVGRGTRNLHMSNIKCGPGH-G 242 (392)
Q Consensus 168 ~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~d----D~i~~~~~s~ni~I~n~~~~~~~-g 242 (392)
+...+.+..|+||++++++|.+++. .++|+..|+|++++|..+.+.+ |++.+.+ ++|++|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 3456889999999999999998763 5799999999999999998754 4888877 899999999999875 5
Q ss_pred eEEeeccccC---CCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCC
Q 046411 243 VSIGSLGKDL---NEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPN 319 (392)
Q Consensus 243 i~iGs~~~~~---~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~ 319 (392)
+++.+..... .....+++.|+||+|.....++.+.++ .+|.|+||+++|+.|.+...++.|++...
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 8887642211 123579999999999988777777776 67899999999999999999999997543
Q ss_pred CCCceeEEeEEEEeEEEEeC
Q 046411 320 KNSGVKISQVTYRNIQGTSA 339 (392)
Q Consensus 320 ~~~~~~i~nitf~ni~~~~~ 339 (392)
.++.++||+|+++.+...
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 336889999988877664
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.33 E-value=4.8e-10 Score=106.99 Aligned_cols=163 Identities=21% Similarity=0.292 Sum_probs=125.0
Q ss_pred eeEEEEEc-c----EEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEEC
Q 046411 115 VDRLSIIG-G----TLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIA 189 (392)
Q Consensus 115 ~~nv~I~G-G----~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~ 189 (392)
.++|+|.| | +|++.++. .....+ ...+++++|+++++.++..+++.+..|++++|+++++..
T Consensus 31 ~~~Iti~G~g~~~tvid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~ 97 (314)
T TIGR03805 31 ADGVTIRGAGMDETILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEW 97 (314)
T ss_pred CCCeEEEecCCCccEEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEe
Confidence 47899988 5 37766541 112334 346899999999999999999999999999999999973
Q ss_pred CCC---CCCCCeeeeeccccEEEEceEEecC-CceEEeCCCceeEEEEeeEEecC-ceeEEeeccccCCCCCeEeEEEEe
Q 046411 190 PAE---SPNTDGIHVESSTGVTITGGTIQTG-DDCISVGRGTRNLHMSNIKCGPG-HGVSIGSLGKDLNEDGVENVTLTN 264 (392)
Q Consensus 190 ~~~---~~n~DGi~~~~s~nv~I~n~~i~~~-dD~i~~~~~s~ni~I~n~~~~~~-~gi~iGs~~~~~~~~~i~ni~i~n 264 (392)
... ....+||.+..|++++|++|+++.. |++|.++. +++++|+||+++.. .|+.+- ...++.+++
T Consensus 98 ~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~---------~S~~~~v~~ 167 (314)
T TIGR03805 98 TGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIE---------NSQNADVYN 167 (314)
T ss_pred ccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEE---------ecCCcEEEC
Confidence 321 1346899999999999999999985 45898876 78999999999865 567663 236788999
Q ss_pred eEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 265 SVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 265 ~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
+.+.+...|+.+...++.....-+++++++.++.+.
T Consensus 168 N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 168 NIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 999998889988765432223457888888887654
No 22
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.18 E-value=2.5e-09 Score=96.72 Aligned_cols=246 Identities=20% Similarity=0.343 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHHH-HHhhhhccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceE--EEE-EEEee
Q 046411 4 AKLITISCVVSVF-LIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRY--LIK-NAVFR 79 (392)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y--~~~-~l~l~ 79 (392)
+.+++...++.++ ..++.+.++..++++.||.. .|.-++|.+|+.. +.||.+|+|-- .+. .+.++
T Consensus 9 rtf~ta~sala~~hsp~~ra~~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip 77 (464)
T PRK10123 9 RTFLTASSALAFLHTPFARALPARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP 77 (464)
T ss_pred hhhhhhhhHHHHhcCHhhhhcCCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEeC
Confidence 3344444444444 24455666788999999985 4778899999954 57999999974 233 35552
Q ss_pred CCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEEc---cEEeCCCCceeeccCCCCCCCCCceEEEEEeeCc
Q 046411 80 GPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIG---GTLDGKGAGFWACRKSGRNCPVGTRSITINSANN 156 (392)
Q Consensus 80 ~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G---G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~n 156 (392)
.+-+|++.|.|..... +.++.-++++ +.| |.+. ...+-+ ..++
T Consensus 78 ----~gktl~v~g~l~gngr-------grfvlqdg~q---v~ge~~g~~h-------------------nitldv-rgsd 123 (464)
T PRK10123 78 ----PGKTLHILGSLRGNGR-------GRFVLQDGSQ---VTGEEGGSMH-------------------NITLDV-RGSD 123 (464)
T ss_pred ----CCCeEEEEEEeecCCc-------eeEEEecCCE---eecCCCceee-------------------eEEEee-ccCc
Confidence 5678888888754332 3344433332 222 2210 111222 2456
Q ss_pred eEEEeEEEec-CCccEEEEec-----eecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEec-CCceEEeCCC--c
Q 046411 157 VIVSGLTSIN-SQLSHLVISS-----CNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQT-GDDCISVGRG--T 227 (392)
Q Consensus 157 v~I~~v~i~~-~~~~~i~~~~-----~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-~dD~i~~~~~--s 227 (392)
..|+++.+.. .|...+.+.+ -+|++|+++++....++-...|+|-.- ..+.|.||.|.. ..|+|...-. -
T Consensus 124 c~ikgiamsgfgpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdaiewnvaind 202 (464)
T PRK10123 124 CTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAIEWNVAIND 202 (464)
T ss_pred eEEeeeeecccCceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceEEEEEEecc
Confidence 6777777654 3444555543 357888888886543333345665443 577888888875 5566654421 2
Q ss_pred eeEE-----EEeeEEecC---ceeEEeeccc-----cCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEE
Q 046411 228 RNLH-----MSNIKCGPG---HGVSIGSLGK-----DLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQN 294 (392)
Q Consensus 228 ~ni~-----I~n~~~~~~---~gi~iGs~~~-----~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~n 294 (392)
+|+. |++..|.++ .|+.||..|. |.+...++|+.+.|++-.+++.-+.+.. +..-.|+||+.+|
T Consensus 203 r~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven---gkhfvirnvkakn 279 (464)
T PRK10123 203 RDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN---GKHFVIRNIKAKN 279 (464)
T ss_pred cceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC---CcEEEEEeeeccc
Confidence 4454 444555554 4788877655 3445568899999998777765555542 2445677777777
Q ss_pred EEEe
Q 046411 295 IIMR 298 (392)
Q Consensus 295 i~i~ 298 (392)
|+-+
T Consensus 280 itpd 283 (464)
T PRK10123 280 ITPD 283 (464)
T ss_pred cCCC
Confidence 6643
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.98 E-value=1.5e-08 Score=91.02 Aligned_cols=115 Identities=15% Similarity=0.256 Sum_probs=80.7
Q ss_pred eeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEE
Q 046411 153 SANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHM 232 (392)
Q Consensus 153 ~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I 232 (392)
.|++++++++++ .+..+ +.+|+|+.++++.+.+. .-+++++||.|+|+.+.+.|- ++. ++||+|
T Consensus 116 ~c~~i~l~nv~~-~gdYf---~m~s~ni~id~l~~~Gn--------Y~Fq~~kNvei~ns~l~sKDA---FWn-~eNVtV 179 (277)
T PF12541_consen 116 NCRGIKLKNVQA-NGDYF---FMNSENIYIDNLVLDGN--------YSFQYCKNVEIHNSKLDSKDA---FWN-CENVTV 179 (277)
T ss_pred EeCCeEEEeEEE-eceEe---eeeccceEEeceEEeCC--------EEeeceeeEEEEccEEecccc---ccc-CCceEE
Confidence 566666666666 33222 23466777777776653 567889999999999998772 333 889999
Q ss_pred EeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEE
Q 046411 233 SNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPIL 305 (392)
Q Consensus 233 ~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~ 305 (392)
.|+.+. |=.+|- ..+|+++.||++.+.+ +--+++|++++||++.+++-++.
T Consensus 180 yDS~i~---GEYLgW--------~SkNltliNC~I~g~Q-----------pLCY~~~L~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 180 YDSVIN---GEYLGW--------NSKNLTLINCTIEGTQ-----------PLCYCDNLVLENCTMIDTDLAFE 230 (277)
T ss_pred EcceEe---eeEEEE--------EcCCeEEEEeEEeccC-----------ccEeecceEEeCcEeecceeeee
Confidence 999884 322221 2489999999988873 34567889999999987765443
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.71 E-value=3.2e-07 Score=78.01 Aligned_cols=139 Identities=26% Similarity=0.358 Sum_probs=96.0
Q ss_pred EEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCce
Q 046411 149 ITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTR 228 (392)
Q Consensus 149 i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ 228 (392)
|.+....+++|+++++.+...+++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+. .+.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 66777888999999999998999999999999999999987 246899998899999999999877667666 478
Q ss_pred eEEEEeeEEecC--ceeEEeeccccCCCCCeEeEEEEeeEEeCCc-eeEEEEeecCCCCeeEEceEEEEEEEecCC-ccE
Q 046411 229 NLHMSNIKCGPG--HGVSIGSLGKDLNEDGVENVTLTNSVFTGSD-NGVRIKSWARPSRSFVRNVFFQNIIMRNVK-NPI 304 (392)
Q Consensus 229 ni~I~n~~~~~~--~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~-~~i 304 (392)
.++|++|.+... .|+.+.. ..++++|+++++.+.. .|+.+.... -.+++++++++.+.. .++
T Consensus 77 ~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~gi 142 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNGI 142 (158)
T ss_dssp S-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEEE
T ss_pred CceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCcceeE
Confidence 999999999864 3676631 2467899999999876 687776532 235777888887664 565
Q ss_pred EEE
Q 046411 305 LID 307 (392)
Q Consensus 305 ~i~ 307 (392)
.+.
T Consensus 143 ~~~ 145 (158)
T PF13229_consen 143 YLI 145 (158)
T ss_dssp E-T
T ss_pred EEE
Confidence 543
No 25
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.68 E-value=2.5e-06 Score=83.18 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=93.6
Q ss_pred eEEEEEeeCceEEEeEEEecCC------ccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEe-cCCc
Q 046411 147 RSITINSANNVIVSGLTSINSQ------LSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQ-TGDD 219 (392)
Q Consensus 147 ~~i~~~~~~nv~I~~v~i~~~~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~-~~dD 219 (392)
.++.-..+++++|+|+++.++. ...+.+..|++++|++++|.... .-||.+..|+ ..|.++.+. +.+.
T Consensus 107 ~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 107 SLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred eEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccc
Confidence 3566677999999999998854 24788899999999999998762 2478888877 555555554 3455
Q ss_pred eEEeCCCceeEEEEeeEEecC--ceeEEeec------------------------cccCCC---CCeEeEEEEeeEEeCC
Q 046411 220 CISVGRGTRNLHMSNIKCGPG--HGVSIGSL------------------------GKDLNE---DGVENVTLTNSVFTGS 270 (392)
Q Consensus 220 ~i~~~~~s~ni~I~n~~~~~~--~gi~iGs~------------------------~~~~~~---~~i~ni~i~n~~~~~~ 270 (392)
.|.++. +++.+|+++++... +||.+-.. ++++.. -...+++|+++++.++
T Consensus 182 ~I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~ 260 (455)
T TIGR03808 182 AIVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNC 260 (455)
T ss_pred eEEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEecc
Confidence 555554 56777777777643 23444322 111100 0245677777777777
Q ss_pred c-eeEEEEeecCCCCeeEEceEEEEEEEecCCc-cEE
Q 046411 271 D-NGVRIKSWARPSRSFVRNVFFQNIIMRNVKN-PIL 305 (392)
Q Consensus 271 ~-~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~-~i~ 305 (392)
+ .|+++.+. +|+.|++.++++..+ +++
T Consensus 261 r~dgI~~nss--------s~~~i~~N~~~~~R~~alh 289 (455)
T TIGR03808 261 DYSAVRGNSA--------SNIQITGNSVSDVREVALY 289 (455)
T ss_pred ccceEEEEcc--------cCcEEECcEeeeeeeeEEE
Confidence 7 67777653 446666666666655 544
No 26
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.65 E-value=3.5e-06 Score=82.06 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEe
Q 046411 44 STQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVF 78 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l 78 (392)
+.++||+||++| .+|.+|+++.|+|.-..+.+
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEE
Confidence 568999999987 78999999999996334444
No 27
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.5e-05 Score=74.11 Aligned_cols=185 Identities=15% Similarity=0.204 Sum_probs=117.8
Q ss_pred CCCcEEEEcCceEEEEEEEeeCCCCcceEEEEe-e-EEEecCCccccCCCCcEEEEEeeeEEEEEccEEeCCCCceeecc
Q 046411 59 SQASTIVVPKGRYLIKNAVFRGPCKSRITVQIS-G-TIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACR 136 (392)
Q Consensus 59 ~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~-G-~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~ 136 (392)
.+|+.+-+. |+|. +.+.+. --++|+.+ | ++.... .+..+... ++++.++|-+..+.|.....
T Consensus 32 ~pgd~~~i~-g~~~-g~~vIn----r~l~l~ge~ga~l~g~g-------~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~-- 95 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVIN----RALTLRGENGAVLDGGG-------KGSYVTVA-APDVIVEGLTVRGSGRSLPA-- 95 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEc----cceeeccccccEEecCC-------cccEEEEe-CCCceeeeEEEecCCCCccc--
Confidence 577888888 6662 333331 22445444 3 332211 14556665 78888888777666653321
Q ss_pred CCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCC---CCCCCeeeeeccccEEEEceE
Q 046411 137 KSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAE---SPNTDGIHVESSTGVTITGGT 213 (392)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DGi~~~~s~nv~I~n~~ 213 (392)
-....+.-..++.-.|++..+..+ .+++.+..+.++.|++.+|....+ .....||+++++.+..|....
T Consensus 96 -------m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~nd 167 (408)
T COG3420 96 -------MDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGND 167 (408)
T ss_pred -------ccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCc
Confidence 112345556677777777777664 478899999999999999986543 245689999999999999999
Q ss_pred EecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEE
Q 046411 214 IQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRI 276 (392)
Q Consensus 214 i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i 276 (392)
+.-+.|||..+. ++.-.|+++.+.. +..|.+ .+...+..++++...+...|+.+
T Consensus 168 isy~rDgIy~~~-S~~~~~~gnr~~~---~RygvH-----yM~t~~s~i~dn~s~~N~vG~AL 221 (408)
T COG3420 168 ISYGRDGIYSDT-SQHNVFKGNRFRD---LRYGVH-----YMYTNDSRISDNSSRDNRVGYAL 221 (408)
T ss_pred cccccceEEEcc-cccceecccchhh---eeeeEE-----EEeccCcEeecccccCCcceEEE
Confidence 999999998877 5666677766643 222222 12234455555555555555444
No 28
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.57 E-value=1.1e-06 Score=79.26 Aligned_cols=136 Identities=15% Similarity=0.237 Sum_probs=97.1
Q ss_pred EeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCC
Q 046411 113 IKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAE 192 (392)
Q Consensus 113 ~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~ 192 (392)
..+++++|.+-.+.-.....|.++.-....-....-..+.+++|+.++++.+..- ..+++|+||.|+|.++.+-+
T Consensus 95 R~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 95 RECSNITLENVDIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hcccCcEEEeeEeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEeccc-
Confidence 3467777777566445566776554210000001124567899999999999774 45789999999999998753
Q ss_pred CCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCce
Q 046411 193 SPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDN 272 (392)
Q Consensus 193 ~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~ 272 (392)
.++.|+||+|.|+++.. .-++. .++|+++.||++.+.+|+. +++|++++||++.++..
T Consensus 170 -------AFWn~eNVtVyDS~i~G--EYLgW--~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdl 227 (277)
T PF12541_consen 170 -------AFWNCENVTVYDSVING--EYLGW--NSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDL 227 (277)
T ss_pred -------ccccCCceEEEcceEee--eEEEE--EcCCeEEEEeEEeccCccE-----------eecceEEeCcEeeccee
Confidence 26789999999999974 22333 3689999999998766653 47999999999998765
Q ss_pred eEE
Q 046411 273 GVR 275 (392)
Q Consensus 273 gi~ 275 (392)
++.
T Consensus 228 aFE 230 (277)
T PF12541_consen 228 AFE 230 (277)
T ss_pred eee
Confidence 543
No 29
>PLN02497 probable pectinesterase
Probab=98.54 E-value=4.8e-05 Score=72.44 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHhhcCCC--cEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQA--STIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~g--~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ ..... -+++|-+|+|. ..+.+... |.+++|+++|
T Consensus 43 df~TIq~AIdav-P~~~~~~~~I~Ik~G~Y~-EkV~Ip~~-k~~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSV-PSNNKHWFCINVKAGLYR-EKVKIPYD-KPFIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCcEEE-EEEEecCC-CCcEEEEecC
Confidence 467899999875 43222 36999999994 55555322 5788887775
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.53 E-value=1.9e-06 Score=73.21 Aligned_cols=138 Identities=21% Similarity=0.308 Sum_probs=93.1
Q ss_pred EEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECC
Q 046411 111 LFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAP 190 (392)
Q Consensus 111 ~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~ 190 (392)
.+.+..+++|.+..|...+ ...|.+..+..++|++.++.+ ...++.+....+++++++++...
T Consensus 4 ~i~~~~~~~i~~~~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~ 66 (158)
T PF13229_consen 4 SINNGSNVTIRNCTISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN 66 (158)
T ss_dssp EETTCEC-EEESEEEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-
T ss_pred EEECCcCeEEeeeEEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc
Confidence 3444566777775554432 245888888889999999999 67789999889999999999875
Q ss_pred CCCCCCCeeeeeccccEEEEceEEecCCc-eEEeCCCceeEEEEeeEEecC--ceeEEeeccccCCCCCeEeEEEEeeEE
Q 046411 191 AESPNTDGIHVESSTGVTITGGTIQTGDD-CISVGRGTRNLHMSNIKCGPG--HGVSIGSLGKDLNEDGVENVTLTNSVF 267 (392)
Q Consensus 191 ~~~~n~DGi~~~~s~nv~I~n~~i~~~dD-~i~~~~~s~ni~I~n~~~~~~--~gi~iGs~~~~~~~~~i~ni~i~n~~~ 267 (392)
. .|+.+..+.+++|++|.+....+ +|.+.....+++|++|++... .|+.+... .-.+++|++|++
T Consensus 67 ~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i 134 (158)
T PF13229_consen 67 G-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTI 134 (158)
T ss_dssp S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEE
T ss_pred c-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEE
Confidence 3 68999999999999999987655 888874267899999999864 56777443 134788899999
Q ss_pred eCCc-eeEEEE
Q 046411 268 TGSD-NGVRIK 277 (392)
Q Consensus 268 ~~~~-~gi~i~ 277 (392)
.+.. .|+.+.
T Consensus 135 ~~~~~~gi~~~ 145 (158)
T PF13229_consen 135 SNNGGNGIYLI 145 (158)
T ss_dssp ECESSEEEE-T
T ss_pred EeCcceeEEEE
Confidence 8875 677664
No 31
>PLN02480 Probable pectinesterase
Probab=98.48 E-value=8.5e-05 Score=71.25 Aligned_cols=197 Identities=14% Similarity=0.143 Sum_probs=115.5
Q ss_pred ccHHHHHHHHHHHhhcCCCc----EEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEE
Q 046411 43 DSTQSFLRAWAVACRSSQAS----TIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRL 118 (392)
Q Consensus 43 D~t~Aiq~Ai~~a~~~~~g~----~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 118 (392)
.|-..||+||+++ ..+. +|+|.+|+|. +.+.+... |.+++|.++|. +..
T Consensus 58 g~f~TIQ~AIdaa---p~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp~ItL~G~g~----------------------~~T 110 (343)
T PLN02480 58 GDFTSVQSAIDAV---PVGNSEWIIVHLRKGVYR-EKVHIPEN-KPFIFMRGNGK----------------------GRT 110 (343)
T ss_pred CCcccHHHHHhhC---ccCCCceEEEEEcCcEEE-EEEEECCC-CceEEEEecCC----------------------CCe
Confidence 4688999999976 3333 4889999997 77767422 45677766541 011
Q ss_pred EEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCC---------ccEEEE-eceecEEEEeEEEE
Q 046411 119 SIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQ---------LSHLVI-SSCNNVIVRNVKFI 188 (392)
Q Consensus 119 ~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~---------~~~i~~-~~~~nv~i~~~~i~ 188 (392)
.|.+ +... . . ......+ ...+++++++|++|+|.. ...+.+ ..++.+.+.+|++.
T Consensus 111 vI~~-----~~~~------~-~--~~~saTv-tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~ 175 (343)
T PLN02480 111 SIVW-----SQSS------S-D--NAASATF-TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFY 175 (343)
T ss_pred EEEc-----cccc------c-C--CCCceEE-EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEe
Confidence 1111 0000 0 0 0011123 334688888888888862 133444 36788999999998
Q ss_pred CCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecC-------ce-eEEeeccccCCCCCeEeE
Q 046411 189 APAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPG-------HG-VSIGSLGKDLNEDGVENV 260 (392)
Q Consensus 189 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~-------~g-i~iGs~~~~~~~~~i~ni 260 (392)
...+. +... ..+-.++||+|...=|-| +. .....+++|.+..- .| +.--+ . ....-.-.
T Consensus 176 G~QDT-----Ly~~-~gR~yf~~C~IeG~VDFI-FG--~g~a~fe~C~i~s~~~~~~~~~G~ITA~~--r--~~~~~~Gf 242 (343)
T PLN02480 176 STHNT-----LFDY-KGRHYYHSCYIQGSIDFI-FG--RGRSIFHNCEIFVIADRRVKIYGSITAHN--R--ESEDNSGF 242 (343)
T ss_pred cccce-----eEeC-CCCEEEEeCEEEeeeeEE-cc--ceeEEEEccEEEEecCCCCCCceEEEcCC--C--CCCCCCEE
Confidence 76543 3222 246788899998655544 22 34778888888631 12 21111 1 11233568
Q ss_pred EEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEec
Q 046411 261 TLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRN 299 (392)
Q Consensus 261 ~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~ 299 (392)
.|.||++.+.. ...+. ...+.-..+.|.|+.|.+
T Consensus 243 vF~~C~i~g~g-~~yLG----RPW~~ya~vVf~~t~l~~ 276 (343)
T PLN02480 243 VFIKGKVYGIG-EVYLG----RAKGAYSRVIFAKTYLSK 276 (343)
T ss_pred EEECCEEcccC-ceeee----cCCCCcceEEEEecccCC
Confidence 89999998753 23332 133456778888888865
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1.8e-05 Score=72.66 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=84.9
Q ss_pred eEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEEc-c---EEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEe
Q 046411 86 ITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIG-G---TLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSG 161 (392)
Q Consensus 86 v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G---~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 161 (392)
+.|.+.|+|.++. +. ...+.+..+.|++|.| | ++.| ..+.++.+.||.|++
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g-------------------~gl~i~~a~NVIirN 131 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVG-------------------GGLKIRDAGNVIIRN 131 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEe-------------------ceEEEEeCCcEEEEe
Confidence 5677788876552 11 2246777789999998 4 4433 236777788999999
Q ss_pred EEEecCC-----ccEEEE-eceecEEEEeEEEECCCC---CCCCCe-eeee-ccccEEEEceEEecCCceEEeCCC----
Q 046411 162 LTSINSQ-----LSHLVI-SSCNNVIVRNVKFIAPAE---SPNTDG-IHVE-SSTGVTITGGTIQTGDDCISVGRG---- 226 (392)
Q Consensus 162 v~i~~~~-----~~~i~~-~~~~nv~i~~~~i~~~~~---~~n~DG-i~~~-~s~nv~I~n~~i~~~dD~i~~~~~---- 226 (392)
++|+..+ ...|.+ ..++|+-|+++++..... ..-.|| +++. .+..|+|++|.|...+-..-+.+.
T Consensus 132 ltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~ 211 (345)
T COG3866 132 LTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSN 211 (345)
T ss_pred eEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccc
Confidence 9998766 356666 678888888888876321 112344 4554 356788888888776655545431
Q ss_pred ----ceeEEEEeeEEec
Q 046411 227 ----TRNLHMSNIKCGP 239 (392)
Q Consensus 227 ----s~ni~I~n~~~~~ 239 (392)
-.+|++.+|+|.+
T Consensus 212 ~~~~~~kvT~hhNyFkn 228 (345)
T COG3866 212 YDDGKYKVTIHHNYFKN 228 (345)
T ss_pred ccCCceeEEEecccccc
Confidence 2458888888765
No 33
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.44 E-value=2.9e-05 Score=70.86 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHhhcCCCcEEEEcCceEEEE-----EEEeeCCCCcceEEEEee
Q 046411 43 DSTQSFLRAWAVACRSSQASTIVVPKGRYLIK-----NAVFRGPCKSRITVQISG 92 (392)
Q Consensus 43 D~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~-----~l~l~~~~ks~v~l~~~G 92 (392)
-.-.-|++|++.| ++|.+|++-||+|.-. +|.+ |+.++|.++.
T Consensus 13 ~P~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i----~~gVtl~G~~ 60 (246)
T PF07602_consen 13 APFKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIII----KPGVTLIGNE 60 (246)
T ss_pred cCHHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEe----cCCeEEeecc
Confidence 4456899999876 7899999999999643 3666 4778886653
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.43 E-value=1.4e-05 Score=73.34 Aligned_cols=127 Identities=24% Similarity=0.236 Sum_probs=93.7
Q ss_pred EEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCc
Q 046411 148 SITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGT 227 (392)
Q Consensus 148 ~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s 227 (392)
.+.+..+.+++|++.++.+. ..++++..+++.+|++..+... ..||.+..+.+.+|+++.|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 45777888889999888887 7788888888888999988864 278888888877999999988777887776 5
Q ss_pred eeEEEEeeEEec-CceeEEeeccccCCCCCeEeEEEEeeEEeCC-ceeEEEEeecCCCCeeEEceEE
Q 046411 228 RNLHMSNIKCGP-GHGVSIGSLGKDLNEDGVENVTLTNSVFTGS-DNGVRIKSWARPSRSFVRNVFF 292 (392)
Q Consensus 228 ~ni~I~n~~~~~-~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~-~~gi~i~~~~~~~~g~i~nI~~ 292 (392)
.+.+|+++.+.. ..|+.+... .+.+|++++|.+. ..|+.+... .....|.+-.|
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~~~~--s~~n~I~~N~f 165 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYFLSG--SSGNTIYNNNF 165 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEEecc--CCCCEEECCCc
Confidence 577888888863 357777421 6777888888887 778873321 23344544444
No 35
>PLN02176 putative pectinesterase
Probab=98.37 E-value=0.0002 Score=68.47 Aligned_cols=195 Identities=17% Similarity=0.171 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHhhcCCC--cEEEEcCceEEEEEEEeeCCCCcceEEEEee---EEEecCCccccCCCCcEEEEEeeeEE
Q 046411 44 STQSFLRAWAVACRSSQA--STIVVPKGRYLIKNAVFRGPCKSRITVQISG---TIVAPNDYRALGKSDRWILFIKVDRL 118 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~g--~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 118 (392)
|-..||+||+++ ..... -+++|++|+|. ..+.+... |.+++|.++| ++..-.+..
T Consensus 50 df~TIq~AIdav-P~~~~~~~~I~Ik~GvY~-EkV~Ip~~-k~~vtl~G~g~~~TiIt~~~~~----------------- 109 (340)
T PLN02176 50 YFKTVQSAIDSI-PLQNQNWIRILIQNGIYR-EKVTIPKE-KGYIYMQGKGIEKTIIAYGDHQ----------------- 109 (340)
T ss_pred CccCHHHHHhhc-hhcCCceEEEEECCcEEE-EEEEECCC-CccEEEEEcCCCceEEEEeCCc-----------------
Confidence 477899999975 43222 37999999996 56666433 6789998876 322111100
Q ss_pred EEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCc----------cEEEE-eceecEEEEeEEE
Q 046411 119 SIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQL----------SHLVI-SSCNNVIVRNVKF 187 (392)
Q Consensus 119 ~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----------~~i~~-~~~~nv~i~~~~i 187 (392)
++ + ....+.. .++++..++++|+|... ..+-+ ...+...+.+|++
T Consensus 110 ----~t-~------------------~saT~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f 165 (340)
T PLN02176 110 ----AT-D------------------TSATFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSF 165 (340)
T ss_pred ----cc-c------------------cceEEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEE
Confidence 00 0 0011222 46777777777776521 22222 2467788888888
Q ss_pred ECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecC---------ce-eEEeeccccCCCCCe
Q 046411 188 IAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPG---------HG-VSIGSLGKDLNEDGV 257 (392)
Q Consensus 188 ~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~---------~g-i~iGs~~~~~~~~~i 257 (392)
....+. +... ...-.+++|+|...=|-|- . .....++||.+..- .| +.-- +.. ....-
T Consensus 166 ~G~QDT-----Ly~~-~gRqyf~~CyIeG~VDFIF-G--~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~--~r~-~~~~~ 233 (340)
T PLN02176 166 DGFQDT-----LFDG-KGRHYYKRCVISGGIDFIF-G--YAQSIFEGCTLKLTLGIYPPNEPYGTITAQ--GRP-SPSDK 233 (340)
T ss_pred ecccce-----eEeC-CcCEEEEecEEEecccEEe-c--CceEEEeccEEEEecccCCCCCCcEEEEeC--CCC-CCCCC
Confidence 875432 3222 2467788888886555542 2 23677888877521 12 1110 100 11223
Q ss_pred EeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEec
Q 046411 258 ENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRN 299 (392)
Q Consensus 258 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~ 299 (392)
.-..|.||++.+.. -..+. .....-..+.|.|+.|.+
T Consensus 234 ~GfvF~~C~itg~g-~~yLG----RPW~~yarvVf~~t~m~~ 270 (340)
T PLN02176 234 GGFVFKDCTVTGVG-KALLG----RAWGSYARVIFYRSRFSD 270 (340)
T ss_pred cEEEEECCEEccCc-ceeee----cCCCCCceEEEEecCcCC
Confidence 46889999998753 22222 133445678888887765
No 36
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.34 E-value=5.4e-05 Score=74.90 Aligned_cols=242 Identities=14% Similarity=0.179 Sum_probs=127.4
Q ss_pred CCcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCc------cccCC-C------C---cEE---EEEeeeEEEE
Q 046411 60 QASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDY------RALGK-S------D---RWI---LFIKVDRLSI 120 (392)
Q Consensus 60 ~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~------~~~~~-~------~---~~i---~~~~~~nv~I 120 (392)
.+.+|||.||.|.-|.+.+... ++++.+.+.|+|-...-. +.|.. + + .++ ...+..++.+
T Consensus 255 n~~~VYlApGAyVkGAf~~~~~-~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 255 NTKWVYLAPGAYVKGAFEYTDT-QQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp T--EEEE-TTEEEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred CccEEEEcCCcEEEEEEEEccC-CceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 4579999999999998766422 578888888888643211 11210 0 0 112 2334678888
Q ss_pred EccEEeCCCCceeeccCCCCCCCCCceEEEEEeeC----ceEEEeEEEecCCcc---EEEEeceecEEEEeEEEECCCCC
Q 046411 121 IGGTLDGKGAGFWACRKSGRNCPVGTRSITINSAN----NVIVSGLTSINSQLS---HLVISSCNNVIVRNVKFIAPAES 193 (392)
Q Consensus 121 ~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~----nv~I~~v~i~~~~~~---~i~~~~~~nv~i~~~~i~~~~~~ 193 (392)
.|-+|... ++| .+.+++-+ ...|++++...+-.| ++.+ +++-+|+||.++..
T Consensus 334 ~GiTI~~p--P~~--------------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--y~nS~i~dcF~h~n--- 392 (582)
T PF03718_consen 334 EGITINDP--PFH--------------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--YPNSTIRDCFIHVN--- 392 (582)
T ss_dssp ES-EEE----SS---------------SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEES---
T ss_pred EeeEecCC--Ccc--------------eEEecCCccccccceeeceeeeeeEEeccCCccc--cCCCeeeeeEEEec---
Confidence 88555322 122 24555433 478899998875443 4444 47888999999974
Q ss_pred CCCCeeeeeccccEEEEceEEecCCc--eEEeCC---CceeEEEEeeEEe-c---------CceeEEeecccc---C--C
Q 046411 194 PNTDGIHVESSTGVTITGGTIQTGDD--CISVGR---GTRNLHMSNIKCG-P---------GHGVSIGSLGKD---L--N 253 (392)
Q Consensus 194 ~n~DGi~~~~s~nv~I~n~~i~~~dD--~i~~~~---~s~ni~I~n~~~~-~---------~~gi~iGs~~~~---~--~ 253 (392)
.|+|.+.. .++.|++|++..... .+-+.- ..+|++|+|+.+= . ..+| +++...+ . .
T Consensus 393 --DD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I-~~ss~~y~~~~s~~ 468 (582)
T PF03718_consen 393 --DDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAI-LGSSPFYDDMASTK 468 (582)
T ss_dssp --S-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-EC-EEE--BTTS-SSS-
T ss_pred --Cchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCcee-EecccccccccCCC
Confidence 58898888 799999999987432 233321 2578999998752 1 1233 2332222 0 0
Q ss_pred ----CCCeEeEEEEeeEEeCCce-eEEEEeecCCCCeeEEceEEEEEEEecCC-----ccE-EEEeecCCCCCCCCCCCC
Q 046411 254 ----EDGVENVTLTNSVFTGSDN-GVRIKSWARPSRSFVRNVFFQNIIMRNVK-----NPI-LIDQNYCPNNQGCPNKNS 322 (392)
Q Consensus 254 ----~~~i~ni~i~n~~~~~~~~-gi~i~~~~~~~~g~i~nI~~~ni~i~~~~-----~~i-~i~~~~~~~~~~~~~~~~ 322 (392)
...+++++|+|+++++... .++|. .-..-.|+.++|+.++... ... .++..+.... ..
T Consensus 469 ~adp~~ti~~~~~~nv~~EG~~~~l~ri~-----plqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~------~~ 537 (582)
T PF03718_consen 469 TADPSTTIRNMTFSNVRCEGMCPCLFRIY-----PLQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMAN------NK 537 (582)
T ss_dssp -BEEEEEEEEEEEEEEEEECCE-ECEEE-------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--------
T ss_pred CCCcccceeeEEEEeEEEecccceeEEEe-----ecCCCcceEEEEeecccccCcccccceeeccccccccc------cc
Confidence 1236899999999999754 56665 3456677888888887321 111 1222222111 12
Q ss_pred ceeEEeEEEEeEEEEe
Q 046411 323 GVKISQVTYRNIQGTS 338 (392)
Q Consensus 323 ~~~i~nitf~ni~~~~ 338 (392)
.....++.|+|.++-+
T Consensus 538 ~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 538 QNDTMGIIIENWTVGG 553 (582)
T ss_dssp B--EEEEEEEEEEETT
T ss_pred cccccceEEEeEEECC
Confidence 4467778888877654
No 37
>PLN02665 pectinesterase family protein
Probab=98.33 E-value=0.00041 Score=67.11 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ .... --+|+|.+|+|. ..+.+... |.+++|+++|
T Consensus 79 df~TIq~AIdai-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~-kp~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSI-PAGNTQRVIIDIGPGEYN-EKITIDRS-KPFVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhC-cccCCceEEEEEeCcEEE-EEEEecCC-CCEEEEEecC
Confidence 477899999975 4322 247889999997 66666322 5778887764
No 38
>PLN02682 pectinesterase family protein
Probab=98.30 E-value=0.00045 Score=66.71 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 43 DSTQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 43 D~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
-|-.-||+||+++ .... --+|+|.||+|. ..+.+... |.+++|+++|
T Consensus 80 Gdf~TIQ~AIdav-P~~~~~r~vI~Ik~G~Y~-EkV~Ip~~-k~~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSL-PVINLVRVVIKVNAGTYR-EKVNIPPL-KAYITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhc-cccCCceEEEEEeCceee-EEEEEecc-CceEEEEecC
Confidence 3566899999975 4322 258999999995 55666322 6789998876
No 39
>PLN02773 pectinesterase
Probab=98.27 E-value=0.00033 Score=66.55 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-.-||+||+++ .... --+|+|.+|+|. ..+.+... |.+++|.+++
T Consensus 16 df~TIq~Aida~-P~~~~~~~~I~Ik~G~Y~-E~V~I~~~-k~~itl~G~~ 63 (317)
T PLN02773 16 DYCTVQDAIDAV-PLCNRCRTVIRVAPGVYR-QPVYVPKT-KNLITLAGLS 63 (317)
T ss_pred CccCHHHHHhhc-hhcCCceEEEEEeCceEE-EEEEECcC-CccEEEEeCC
Confidence 467899999975 4322 247999999997 66766432 5678888764
No 40
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.27 E-value=4.6e-05 Score=69.94 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=110.6
Q ss_pred EEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCc
Q 046411 148 SITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGT 227 (392)
Q Consensus 148 ~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s 227 (392)
.+.+.++++..|++.++.+.. .++.+..+.+++|++.++... ..||++..+++++|+++.+.....+|.+...+
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~ 88 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMGSS 88 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEcCC
Confidence 578889999999999997754 567889999999999999874 57999999999999999999988999998844
Q ss_pred eeEEEEeeEEecC-ceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecC-CccEE
Q 046411 228 RNLHMSNIKCGPG-HGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNV-KNPIL 305 (392)
Q Consensus 228 ~ni~I~n~~~~~~-~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~-~~~i~ 305 (392)
+.+|+++.+... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..++.
T Consensus 89 -~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 89 -NNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred -CcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 559999999854 5776632 35688999999988889998642 5677888888777 77877
Q ss_pred E
Q 046411 306 I 306 (392)
Q Consensus 306 i 306 (392)
+
T Consensus 151 ~ 151 (236)
T PF05048_consen 151 F 151 (236)
T ss_pred E
Confidence 3
No 41
>PLN02634 probable pectinesterase
Probab=98.21 E-value=0.0005 Score=66.10 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ .+.. --+++|-||+|. ..+.+... |.+++|+++|
T Consensus 67 df~TIQaAIda~-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~-k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSV-PKNNTMSVTIKINAGFYR-EKVVVPAT-KPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhC-cccCCccEEEEEeCceEE-EEEEEcCC-CCeEEEEecC
Confidence 577899999975 4322 247999999995 55655322 5788888876
No 42
>PLN02671 pectinesterase
Probab=98.16 E-value=0.00029 Score=67.82 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ .... --+|+|.||+|. ..+.+... |.+++|.++|
T Consensus 70 df~TIQ~AIdav-P~~~~~~~~I~Ik~GvY~-EkV~I~~~-k~~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMV-PDYNSQRVKIYILPGIYR-EKVLVPKS-KPYISFIGNE 117 (359)
T ss_pred CccCHHHHHHhc-hhcCCccEEEEEeCceEE-EEEEECCC-CCeEEEEecC
Confidence 477899999975 3322 248999999996 55666322 5788887764
No 43
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.00021 Score=65.84 Aligned_cols=123 Identities=24% Similarity=0.324 Sum_probs=93.6
Q ss_pred EEEEEeeCceEEEeEEEe-cCCccEEEEeceecEEEEeEEEECCCCC-CCCCeeee-eccccEEEEceEEec--------
Q 046411 148 SITINSANNVIVSGLTSI-NSQLSHLVISSCNNVIVRNVKFIAPAES-PNTDGIHV-ESSTGVTITGGTIQT-------- 216 (392)
Q Consensus 148 ~i~~~~~~nv~I~~v~i~-~~~~~~i~~~~~~nv~i~~~~i~~~~~~-~n~DGi~~-~~s~nv~I~n~~i~~-------- 216 (392)
.+.+.-|.|.+|.|+--. ....|++.+.+..||.|+|++|+..... ++-|+|.+ ..++|+=|++|++..
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 488888999999998743 2345889999999999999999865422 33489999 678999999999986
Q ss_pred -CCceEEeCCCceeEEEEeeEEecC-ceeEEeeccccCCCCCeEeEEEEeeEEeCC
Q 046411 217 -GDDCISVGRGTRNLHMSNIKCGPG-HGVSIGSLGKDLNEDGVENVTLTNSVFTGS 270 (392)
Q Consensus 217 -~dD~i~~~~~s~ni~I~n~~~~~~-~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~ 270 (392)
+|..+.++-++.+|+|++|+|... .++-+|+.-.......-.+|++.+|+|.+.
T Consensus 174 h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 174 HGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 366778888899999999999865 456666642211123456788888888874
No 44
>smart00656 Amb_all Amb_all domain.
Probab=98.09 E-value=0.00019 Score=63.57 Aligned_cols=99 Identities=26% Similarity=0.376 Sum_probs=70.1
Q ss_pred EEEEeceecEEEEeEEEECCCC--CCCCCeeeeeccccEEEEceEEecC----------CceEEeCCCceeEEEEeeEEe
Q 046411 171 HLVISSCNNVIVRNVKFIAPAE--SPNTDGIHVESSTGVTITGGTIQTG----------DDCISVGRGTRNLHMSNIKCG 238 (392)
Q Consensus 171 ~i~~~~~~nv~i~~~~i~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~~----------dD~i~~~~~s~ni~I~n~~~~ 238 (392)
++.+..++||.|++++|+.... ..+.|+|.+.++++|-|++|.+..+ |..+.++.++.+++|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3444446677777777775432 2467999999999999999999876 555677878899999999997
Q ss_pred cC-ceeEEeeccccCCCCCeEeEEEEeeEEeCC
Q 046411 239 PG-HGVSIGSLGKDLNEDGVENVTLTNSVFTGS 270 (392)
Q Consensus 239 ~~-~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~ 270 (392)
.. .+.-+|+.-... .....+|++.++.+.+.
T Consensus 113 ~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 113 NHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred cCCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 53 456676532111 11245799999988764
No 45
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=98.09 E-value=0.0015 Score=65.90 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHhhc--CCCcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRS--SQASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~--~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-.-||+||+++... ..--+++|.+|+|. ..+.+... |.+++|.++|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~nItl~G~g 284 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTK-QKNVMLVGDG 284 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCC-CceEEEEEcC
Confidence 467899999864111 12358999999996 55656432 6788888876
No 46
>PLN02304 probable pectinesterase
Probab=97.95 E-value=0.0031 Score=61.09 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHhhcC--CCcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSS--QASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~--~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ .+. .--+|+|.+|+|. ..+.+... |.+++|+++|
T Consensus 86 df~TIQ~AIdav-P~~~~~r~vI~Ik~GvY~-EkV~Ip~~-K~~Itl~G~g 133 (379)
T PLN02304 86 NFTTVQSAVDAV-GNFSQKRNVIWINSGIYY-EKVTVPKT-KPNITFQGQG 133 (379)
T ss_pred CccCHHHHHhhC-cccCCCcEEEEEeCeEeE-EEEEECCC-CCcEEEEecC
Confidence 466899999975 432 1247999999996 56656322 6889998876
No 47
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.0017 Score=66.43 Aligned_cols=186 Identities=11% Similarity=0.070 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHHhhcC---CCcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEE
Q 046411 44 STQSFLRAWAVACRSS---QASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSI 120 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~---~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 120 (392)
+-.-||+||+++ .+. .--+|+|.+|+|. ..+.+... |.+++|.++|.= ...|... .+...
T Consensus 252 ~f~TIq~Av~a~-p~~~~~~r~vI~vk~GvY~-E~V~i~~~-k~~v~l~G~g~~------------~TiIt~~--~~~~~ 314 (553)
T PLN02708 252 CYKTVQEAVNAA-PDNNGDRKFVIRIKEGVYE-ETVRVPLE-KKNVVFLGDGMG------------KTVITGS--LNVGQ 314 (553)
T ss_pred CccCHHHHHHhh-hhccCCccEEEEEeCceEE-eeeeecCC-CccEEEEecCCC------------ceEEEec--CccCC
Confidence 466899999876 431 1249999999996 45555322 578888887620 0011100 00000
Q ss_pred Ec-cEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCee
Q 046411 121 IG-GTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGI 199 (392)
Q Consensus 121 ~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi 199 (392)
.| ++. ...-.....+++..+|++|+|...-. .+-.-.+
T Consensus 315 ~g~~T~--------------------~saT~~v~~~~f~a~~it~~Ntag~~---------------------~~QAVAl 353 (553)
T PLN02708 315 PGISTY--------------------NTATVGVLGDGFMARDLTIQNTAGPD---------------------AHQAVAF 353 (553)
T ss_pred CCcCcc--------------------ceEEEEEEcCCeEEEeeEEEcCCCCC---------------------CCceEEE
Confidence 01 010 11222335678888888888754210 0001112
Q ss_pred eeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCc--------
Q 046411 200 HVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSD-------- 271 (392)
Q Consensus 200 ~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~-------- 271 (392)
.+. +..+.+.||.|....|-+-.+++ .-.+++|++.+.-.+-+|. -..+|+||++.-..
T Consensus 354 rv~-~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~ 420 (553)
T PLN02708 354 RSD-SDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN----------SAAVFQDCAILIAPRQLKPEKG 420 (553)
T ss_pred Eec-CCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC----------ceEEEEccEEEEeccccCCCCC
Confidence 222 25667777777766666655442 3456777776665655553 24567777665210
Q ss_pred eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 272 NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 272 ~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
..-.|..........-..+.|.||++...
T Consensus 421 ~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 421 ENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred CceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 01123222112223344677777777653
No 48
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.0034 Score=63.57 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
+-.-||+||+++ .... --+|+|.||+|. ..+.+... |.+++|.++|
T Consensus 229 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~itl~G~g 276 (530)
T PLN02933 229 NFTTINEAVSAA-PNSSETRFIIYIKGGEYF-ENVELPKK-KTMIMFIGDG 276 (530)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEcCceEE-EEEEecCC-CceEEEEEcC
Confidence 466899999875 3322 248999999997 66666433 6788888776
No 49
>PLN02916 pectinesterase family protein
Probab=97.91 E-value=0.004 Score=62.61 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHhhcC-----CCcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSS-----QASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~-----~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-.-||+||+++ .+. .--+|+|.||+|. ..+.+... |.+++|.++|
T Consensus 198 ~f~TIq~AI~a~-P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g 248 (502)
T PLN02916 198 THRTINQALAAL-SRMGKSRTNRVIIYVKAGVYN-EKVEIDRH-MKNVMFVGDG 248 (502)
T ss_pred CccCHHHHHHhc-ccccCCCCceEEEEEeCceee-EEEEecCC-CceEEEEecC
Confidence 466899999875 421 1248999999996 56666432 5788888776
No 50
>PLN02432 putative pectinesterase
Probab=97.91 E-value=0.003 Score=59.45 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ .... --+++|.+|+| -..+.+... |.+++|.++|
T Consensus 22 ~f~TIq~Aida~-p~~~~~~~~I~I~~G~Y-~E~V~ip~~-k~~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAV-PSNNSQLVFIWVKPGIY-REKVVVPAD-KPFITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCcee-EEEEEEecc-CceEEEEEcC
Confidence 477899999975 4322 24799999999 355655322 5778887664
No 51
>smart00656 Amb_all Amb_all domain.
Probab=97.88 E-value=0.00082 Score=59.53 Aligned_cols=118 Identities=22% Similarity=0.284 Sum_probs=77.6
Q ss_pred EEEEeeCceEEEeEEEecCC------ccEEEEeceecEEEEeEEEECCC-C---CCCCCee-eee-ccccEEEEceEEec
Q 046411 149 ITINSANNVIVSGLTSINSQ------LSHLVISSCNNVIVRNVKFIAPA-E---SPNTDGI-HVE-SSTGVTITGGTIQT 216 (392)
Q Consensus 149 i~~~~~~nv~I~~v~i~~~~------~~~i~~~~~~nv~i~~~~i~~~~-~---~~n~DGi-~~~-~s~nv~I~n~~i~~ 216 (392)
+.+..++||.|+++++++.. .+++.+..+++|.|++|++.... . ....||. ++. .+.+|+|++|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 55666788888888887743 35788888889999999887641 0 1113553 443 47999999999986
Q ss_pred CCceEEeCCCc-------eeEEEEeeEEecC--ceeEEeeccccCCCCCeEeEEEEeeEEeCCc-eeEEE
Q 046411 217 GDDCISVGRGT-------RNLHMSNIKCGPG--HGVSIGSLGKDLNEDGVENVTLTNSVFTGSD-NGVRI 276 (392)
Q Consensus 217 ~dD~i~~~~~s-------~ni~I~n~~~~~~--~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~-~gi~i 276 (392)
..-+..+.++. .+|++.+|.+... +.-.+. .+ .+.+-|+.+.+.. +++.+
T Consensus 114 h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 114 HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------FG--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred CCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------CC--EEEEEeeEEeCcccEeEec
Confidence 65555555432 2699999998653 222221 11 5777788777764 45444
No 52
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.0037 Score=63.74 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
+-.-||+||+++ .... --+|+|.+|+|. ..+.+... |.+++|.++|
T Consensus 243 ~f~TIq~Av~a~-p~~~~~r~vI~Vk~GvY~-E~V~I~~~-k~~i~l~G~g 290 (537)
T PLN02506 243 HYRTITEAINEA-PNHSNRRYIIYVKKGVYK-ENIDMKKK-KTNIMLVGDG 290 (537)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCCeee-EEEeccCC-CceEEEEEcC
Confidence 466899999875 3322 248999999995 33444322 5778887775
No 53
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.85 E-value=0.0014 Score=62.13 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=29.4
Q ss_pred ccHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 43 DSTQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 43 D~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
-|-..||+||+++ .... .-+|+|.||+|. ..+.+... |.+++|.++|
T Consensus 10 gdf~TIq~Aida~-p~~~~~~~~I~I~~G~Y~-E~V~i~~~-k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAA-PDNNTSRYTIFIKPGTYR-EKVTIPRS-KPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS--SSSSS-EEEEE-SEEEE---EEE-ST-STTEEEEES-
T ss_pred CCccCHHHHHHhc-hhcCCceEEEEEeCeeEc-cccEeccc-cceEEEEecC
Confidence 3566899999975 4322 248999999996 55666432 4688887765
No 54
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.85 E-value=0.0034 Score=61.60 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=35.1
Q ss_pred cCCCCcccHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 37 KPDGRTDSTQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 37 ~~dg~tD~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
.+||.. |-.-||+||+++..... --+|+|.+|+|. +.+.+... |.+++|+++|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~~-kp~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPAA-APPITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCCC-CceEEEEecC
Confidence 344432 46689999996532221 257999999996 55666422 5789998865
No 55
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.83 E-value=0.007 Score=61.37 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ .+.. --+++|.+|+|. ..+.+... |.+++|.++|
T Consensus 217 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g 264 (520)
T PLN02201 217 NFTTIMDAVLAA-PDYSTKRYVIYIKKGVYL-ENVEIKKK-KWNIMMVGDG 264 (520)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCceeE-EEEEecCC-CceEEEEecC
Confidence 567899999865 4322 358999999996 55666432 5778888776
No 56
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.81 E-value=0.002 Score=66.02 Aligned_cols=149 Identities=16% Similarity=0.073 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHhhcCC-----CcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEE
Q 046411 44 STQSFLRAWAVACRSSQ-----ASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRL 118 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~-----g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 118 (392)
+-.-||+||+++ .+.. --+++|.+|+|. ..+.+... |.+++|.++|.- ...|... .+.
T Consensus 261 ~f~TIq~Av~a~-p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g~~------------~TiIt~~--~~~ 323 (566)
T PLN02713 261 NFTTINDAVAAA-PNNTDGSNGYFVIYVTAGVYE-EYVSIPKN-KKYLMMIGDGIN------------QTVITGN--RSV 323 (566)
T ss_pred CCCCHHHHHHhh-hcccCCCCceEEEEEcCcEEE-EEEEecCC-CceEEEEecCCC------------CcEEEcC--Ccc
Confidence 466899999865 4321 147999999996 55655432 578888877620 0111110 000
Q ss_pred EEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCc----cEEEE-eceecEEEEeEEEECCCCC
Q 046411 119 SIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQL----SHLVI-SSCNNVIVRNVKFIAPAES 193 (392)
Q Consensus 119 ~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~nv~i~~~~i~~~~~~ 193 (392)
.+|.+ .. + ..-.....+++..++++|+|... ..+-+ ..++...+.+|+|.+..+.
T Consensus 324 ------~~g~~-----T~--------~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT 383 (566)
T PLN02713 324 ------VDGWT-----TF--------N-SATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDT 383 (566)
T ss_pred ------cCCCc-----cc--------c-ceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcc
Confidence 01100 00 1 12223356889999999988532 22322 2456667777777665432
Q ss_pred CCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 046411 194 PNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCG 238 (392)
Q Consensus 194 ~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~ 238 (392)
+.... ..-.+++|+|...=|-| +. .....++||.+.
T Consensus 384 -----Ly~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~ 419 (566)
T PLN02713 384 -----LYTHS-LRQFYRECDIYGTVDFI-FG--NAAVVFQNCNLY 419 (566)
T ss_pred -----eEECC-CCEEEEeeEEeccccee-cc--cceEEEeccEEE
Confidence 32222 34566777776544433 11 235666666664
No 57
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.78 E-value=0.0074 Score=62.07 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
+-.-||+||+++ .+.. --+++|.+|+|. ..+.+... |.+++|.++|
T Consensus 270 ~f~TIq~Av~a~-p~~~~~r~vI~Ik~GvY~-E~V~i~~~-k~~i~l~G~g 317 (572)
T PLN02990 270 QYKTINEALNAV-PKANQKPFVIYIKQGVYN-EKVDVTKK-MTHVTFIGDG 317 (572)
T ss_pred CCcCHHHHHhhC-cccCCceEEEEEeCceeE-EEEEecCC-CCcEEEEecC
Confidence 466899999875 4322 248999999996 55656432 5788898876
No 58
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.77 E-value=0.00043 Score=61.83 Aligned_cols=99 Identities=28% Similarity=0.434 Sum_probs=64.8
Q ss_pred EEEEe-ceecEEEEeEEEECC-----------CCCCCCCeeeeeccccEEEEceEEecC---------CceEEeCCCcee
Q 046411 171 HLVIS-SCNNVIVRNVKFIAP-----------AESPNTDGIHVESSTGVTITGGTIQTG---------DDCISVGRGTRN 229 (392)
Q Consensus 171 ~i~~~-~~~nv~i~~~~i~~~-----------~~~~n~DGi~~~~s~nv~I~n~~i~~~---------dD~i~~~~~s~n 229 (392)
++.+. .++||.|+|++|... .+....|++.+..++||-|++|.+..+ |..+.++.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~ 117 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDN 117 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEE
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCce
Confidence 44444 667777777777651 123457899999999999999999765 556788888999
Q ss_pred EEEEeeEEecC-ceeEEeeccccCCCCCeEeEEEEeeEEeCC
Q 046411 230 LHMSNIKCGPG-HGVSIGSLGKDLNEDGVENVTLTNSVFTGS 270 (392)
Q Consensus 230 i~I~n~~~~~~-~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~ 270 (392)
|+|++|.|... .+.-+|+......... .++++-++.+.++
T Consensus 118 vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 118 VTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 99999999764 3455666422222233 8888888888664
No 59
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.77 E-value=0.0028 Score=57.15 Aligned_cols=122 Identities=27% Similarity=0.439 Sum_probs=76.2
Q ss_pred EEEeEEEecCC------ccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEE
Q 046411 158 IVSGLTSINSQ------LSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLH 231 (392)
Q Consensus 158 ~I~~v~i~~~~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~ 231 (392)
+|+++++.... ..++.+..++++.|+++++... +.+|+.+..+....+.+.... .++.+..++.++.
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 167 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNVI 167 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEEE
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccc---eeeeeccceeEEE
Confidence 37777765432 2457777888888888888864 246677764444344333222 0122222345677
Q ss_pred EEeeEEecC-ceeEEeeccccCCCCCeEeEEEEeeEEeC-CceeEEEEeecCCCCeeEEceEEEEEEEecCCccE
Q 046411 232 MSNIKCGPG-HGVSIGSLGKDLNEDGVENVTLTNSVFTG-SDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPI 304 (392)
Q Consensus 232 I~n~~~~~~-~gi~iGs~~~~~~~~~i~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i 304 (392)
+.++.+..+ .|+..+. ++++++||.+.+ ...|+.+.... ++.++|++++++..+|
T Consensus 168 ~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 168 VNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCDDGI 224 (225)
T ss_dssp EECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSSEEE
T ss_pred ECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCccCc
Confidence 788877654 4533322 789999999988 66888887532 2888888888887765
No 60
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.0034 Score=64.04 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-.-||+||+++ .+.. --+|+|.+|+|. ..+.+... |.+++|.++|
T Consensus 241 ~f~TIq~Ai~a~-p~~~~~r~vI~Ik~GvY~-E~V~i~~~-k~~i~l~G~g 288 (541)
T PLN02416 241 NFSTITDAINFA-PNNSNDRIIIYVREGVYE-ENVEIPIY-KTNIVLIGDG 288 (541)
T ss_pred CccCHHHHHHhh-hhcCCceEEEEEeCceeE-EEEecCCC-CccEEEEecC
Confidence 466899999875 4322 247899999995 55655322 5788888776
No 61
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.74 E-value=0.0042 Score=63.47 Aligned_cols=46 Identities=22% Similarity=0.178 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHhhcCC-----CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ-----ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~-----g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
+-.-||+||+++ .+.. --++||.+|+|. ..+.+... |.+++|.++|
T Consensus 234 ~f~TI~~Av~a~-p~~~~~~~~r~vI~vk~G~Y~-E~V~i~~~-k~~i~l~G~g 284 (538)
T PLN03043 234 NFTTITDAIAAA-PNNSKPEDGYFVIYAREGYYE-EYVVVPKN-KKNIMLIGDG 284 (538)
T ss_pred CCcCHHHHHHhc-cccCCCCcceEEEEEcCeeeE-EEEEeCCC-CCcEEEEecC
Confidence 466899999865 4332 138999999995 55655332 5788888876
No 62
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.72 E-value=0.0047 Score=63.72 Aligned_cols=145 Identities=16% Similarity=0.122 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee---EEEecCCccccCCCCcEEEEEeeeEE
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG---TIVAPNDYRALGKSDRWILFIKVDRL 118 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 118 (392)
|-..||+||+++ .+.. --+++|.+|+|. ..+.+... |.+++|.++| ++.. .. .+.
T Consensus 296 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~G~g~~~TiIt---------------~~--~~~ 355 (596)
T PLN02745 296 NFTTISDALAAM-PAKYEGRYVIYVKQGIYD-ETVTVDKK-MVNVTMYGDGSQKTIVT---------------GN--KNF 355 (596)
T ss_pred CcccHHHHHHhc-cccCCceEEEEEeCCeeE-EEEEEcCC-CceEEEEecCCCceEEE---------------EC--Ccc
Confidence 466899999865 3321 247999999996 55656433 5788888876 2211 10 000
Q ss_pred EEEc-cEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCc----cEEEEe-ceecEEEEeEEEECCCC
Q 046411 119 SIIG-GTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQL----SHLVIS-SCNNVIVRNVKFIAPAE 192 (392)
Q Consensus 119 ~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~nv~i~~~~i~~~~~ 192 (392)
-.| ++. + ..-.....+++..++++|+|... ..+-+. .++...+.+|+|.+..+
T Consensus 356 -~~g~~T~-------------------~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD 414 (596)
T PLN02745 356 -ADGVRTF-------------------R-TATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD 414 (596)
T ss_pred -cCCCcce-------------------e-eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc
Confidence 001 110 0 12233367888888888888532 222222 45666666666666543
Q ss_pred CCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 046411 193 SPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCG 238 (392)
Q Consensus 193 ~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~ 238 (392)
. +... ..+-.+++|+|...=|-| +. .....++||.+.
T Consensus 415 T-----Ly~~-~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~ 451 (596)
T PLN02745 415 T-----LYAQ-THRQFYRSCVITGTIDFI-FG--DAAAIFQNCLIF 451 (596)
T ss_pred c-----cccC-CCcEEEEeeEEEeeccEE-ec--ceeEEEEecEEE
Confidence 2 2111 234566666666543432 11 235566666654
No 63
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0083 Score=60.20 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 43 DSTQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 43 D~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
-+-.-||+||+++ .+.. --+++|.+|+|. ..+.+... |.+++|.++|
T Consensus 207 G~f~TIq~AI~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~nItliGdg 255 (509)
T PLN02488 207 GKYNTVNAAIAAA-PEHSRKRFVIYIKTGVYD-EIVRIGST-KPNLTLIGDG 255 (509)
T ss_pred CCccCHHHHHHhc-hhcCCCcEEEEEeCCeeE-EEEEecCC-CccEEEEecC
Confidence 3566899999875 4322 248999999996 55655322 5788888876
No 64
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.70 E-value=0.012 Score=60.81 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-.-||+||+++ .+.. --+|+|.+|+|.=..+.+... |.+++|.++|
T Consensus 283 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~ni~l~G~g 331 (587)
T PLN02484 283 TFKTISEAIKKA-PEHSSRRTIIYVKAGRYEENNLKVGRK-KTNLMFIGDG 331 (587)
T ss_pred CcccHHHHHHhc-cccCCCcEEEEEeCCEEEEEEEEECCC-CceEEEEecC
Confidence 466899999875 4322 247999999996434666432 6788888776
No 65
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.69 E-value=0.0051 Score=62.82 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHhhcCCC--cEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQA--STIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~g--~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ .+... -+|+|.+|+|. ..+.+... |.+++|.++|
T Consensus 247 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASA-PDNSKTRYVIYVKKGTYK-ENVEIGKK-KKNLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhh-hhcCCceEEEEEeCceee-EEEEecCC-CceEEEEecC
Confidence 467899999875 43222 48999999995 45656432 5788888776
No 66
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.65 E-value=0.0054 Score=62.59 Aligned_cols=46 Identities=26% Similarity=0.205 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhc----CCCcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRS----SQASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~----~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-.-||+||+++ .. ..--+++|.+|+|. ..+.+... |.+++|.++|
T Consensus 234 ~f~TIq~Ai~a~-p~~~~~~~r~vI~Ik~G~Y~-E~V~i~~~-k~~i~l~G~g 283 (539)
T PLN02995 234 HFNTVQAAIDVA-GRRKVTSGRFVIYVKRGIYQ-ENINVRLN-NDDIMLVGDG 283 (539)
T ss_pred CccCHHHHHHhc-ccccCCCceEEEEEeCCEeE-EEEEecCC-CCcEEEEEcC
Confidence 566899999875 32 12357999999995 34555322 6789998886
No 67
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.64 E-value=0.0087 Score=61.53 Aligned_cols=149 Identities=14% Similarity=0.105 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEE
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSII 121 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 121 (392)
+-.-||+||+++ .+.. --+|+|.+|+|. ..+.+... |.+++|.++|.= ...|.. ..+.
T Consensus 269 ~f~tI~~Av~a~-p~~~~~~~vI~ik~GvY~-E~V~i~~~-k~~i~~~G~g~~------------~tiIt~--~~~~--- 328 (565)
T PLN02468 269 KYKTISEALKDV-PEKSEKRTIIYVKKGVYF-ENVRVEKK-KWNVVMVGDGMS------------KTIVSG--SLNF--- 328 (565)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCCceE-EEEEecCC-CCeEEEEecCCC------------CCEEEe--CCcc---
Confidence 456899999875 3322 348999999996 55666433 578888887620 011110 0000
Q ss_pred ccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCc----cEEEE-eceecEEEEeEEEECCCCCCCC
Q 046411 122 GGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQL----SHLVI-SSCNNVIVRNVKFIAPAESPNT 196 (392)
Q Consensus 122 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~nv~i~~~~i~~~~~~~n~ 196 (392)
.||.. .| + ..-.....+++..++++|+|... ..+-+ ..++...+.+|+|.+..+.
T Consensus 329 ---~dg~~-t~------------~-saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDT--- 388 (565)
T PLN02468 329 ---VDGTP-TF------------S-TATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDT--- 388 (565)
T ss_pred ---CCCCC-cc------------c-eeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccch---
Confidence 01110 00 0 11223346788888888887532 22222 2466677777777765432
Q ss_pred CeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 046411 197 DGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCG 238 (392)
Q Consensus 197 DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~ 238 (392)
+.... ..-.+++|+|...=|-| +. .....++||.+.
T Consensus 389 --Ly~~~-~rq~y~~C~I~GtvDFI-FG--~a~avfq~c~i~ 424 (565)
T PLN02468 389 --LYAHA-QRQFYRECNIYGTVDFI-FG--NSAVVFQNCNIL 424 (565)
T ss_pred --hccCC-CceEEEeeEEeccccee-ec--cceEEEeccEEE
Confidence 22222 34456777776544433 11 235666676664
No 68
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.64 E-value=0.0054 Score=63.80 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=116.8
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee---EEEecCCccccCCCCcEEEEEeeeEE
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG---TIVAPNDYRALGKSDRWILFIKVDRL 118 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 118 (392)
|-.-||+||+++ .+.. --+|+|-+|+|. ..+.+... |.+++|.++| ++..-. .+.
T Consensus 261 ~f~TIq~Av~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~i~l~Gdg~~~TiIt~~-----------------~~~ 320 (670)
T PLN02217 261 QYKTINEALNFV-PKKKNTTFVVHIKAGIYK-EYVQVNRS-MTHLVFIGDGPDKTVISGS-----------------KSY 320 (670)
T ss_pred CccCHHHHHHhc-cccCCceEEEEEeCCceE-EEEEEcCC-CCcEEEEecCCCCeEEEcC-----------------Ccc
Confidence 466899999875 3322 248999999994 45555433 5678887776 222100 000
Q ss_pred EEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCc----cEEEEe-ceecEEEEeEEEECCCCC
Q 046411 119 SIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQL----SHLVIS-SCNNVIVRNVKFIAPAES 193 (392)
Q Consensus 119 ~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~nv~i~~~~i~~~~~~ 193 (392)
-||.+ .+ + ..-.....+++..+|++|+|... ..+-+. .++...+.+|+|.+..+.
T Consensus 321 ------~dg~~-T~------------~-SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT 380 (670)
T PLN02217 321 ------KDGIT-TY------------K-TATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDT 380 (670)
T ss_pred ------CCCCC-cc------------c-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccch
Confidence 01100 00 1 12233357889999999998643 333333 578888999999876543
Q ss_pred CCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCc-----eeEEeeccccCCCCCeEeEEEEeeEEe
Q 046411 194 PNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGH-----GVSIGSLGKDLNEDGVENVTLTNSVFT 268 (392)
Q Consensus 194 ~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~-----gi~iGs~~~~~~~~~i~ni~i~n~~~~ 268 (392)
+... ..+-.+++|+|...=|-|- . ....+++||.+..-. .-.|--.++ .+...-.-+.|.||++.
T Consensus 381 -----Ly~~-~~Rqyy~~C~I~GtVDFIF-G--~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 381 -----LYAH-SHRQFYRDCTISGTIDFLF-G--DAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIV 450 (670)
T ss_pred -----hccC-CCcEEEEeCEEEEeccEEe-c--CceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEe
Confidence 2222 2467888999986555442 2 246788888886321 111211111 01123457889999998
Q ss_pred CCceeEE----EEeecCCCCeeEEceEEEEEEEecC
Q 046411 269 GSDNGVR----IKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 269 ~~~~gi~----i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
....-.. .+.+-+..+..-..+.|.+..|.+.
T Consensus 451 ~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 451 GEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred cCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 8642111 1111122344567788888877653
No 69
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.60 E-value=0.007 Score=62.51 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHhhcCCC--cEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQA--STIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~g--~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
|-..||+||+++ ..... -+|||.+|+|. ..+.+... |.+++|.++|
T Consensus 286 ~f~TI~~Av~a~-p~~~~~r~vI~ik~GvY~-E~V~i~~~-k~ni~l~Gdg 333 (587)
T PLN02313 286 DFTTVAAAVAAA-PEKSNKRFVIHIKAGVYR-ENVEVTKK-KKNIMFLGDG 333 (587)
T ss_pred CCccHHHHHHhc-cccCCceEEEEEeCceeE-EEEEeCCC-CCeEEEEecC
Confidence 466899999875 43222 38999999996 45555433 5788887776
No 70
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.0028 Score=59.45 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=68.6
Q ss_pred EEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEEC
Q 046411 110 ILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIA 189 (392)
Q Consensus 110 i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~ 189 (392)
|...+..++.|.|-+|.|... .....|...|.++++++..|.+-.+... .+++..+.+++..|++.+++.
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~---------~r~~~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLAD---------LRVAERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred EEEeccCceEEEeeEEeeccc---------cchhhccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhh
Confidence 444556666666644444322 1224456678888888888887776542 356777777777777777654
Q ss_pred CCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 046411 190 PAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCG 238 (392)
Q Consensus 190 ~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~ 238 (392)
. .-|.|...+.+..++++..+...-+.++-- ++.++|.|+.-+
T Consensus 193 ~-----RygvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS~ 235 (408)
T COG3420 193 L-----RYGVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNRSS 235 (408)
T ss_pred e-----eeeEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCccc
Confidence 3 245666666666666666665544444432 455666665544
No 71
>PLN02314 pectinesterase
Probab=97.57 E-value=0.0071 Score=62.51 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcceEEEEee
Q 046411 44 STQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSRITVQISG 92 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G 92 (392)
+-.-||+||+++ .+.. --+++|.+|+|. ..+.+... |.+++|.++|
T Consensus 289 ~f~TI~~Av~a~-p~~~~~r~vI~ik~G~Y~-E~V~i~~~-k~~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASI-PKKSKSRFVIYVKEGTYV-ENVLLDKS-KWNVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEcCceEE-EEEEecCC-CceEEEEecC
Confidence 466799999875 4322 237999999996 55555432 5788888876
No 72
>PLN02197 pectinesterase
Probab=97.38 E-value=0.037 Score=57.08 Aligned_cols=151 Identities=12% Similarity=0.093 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHhhcCCC--cEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEE
Q 046411 44 STQSFLRAWAVACRSSQA--STIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSII 121 (392)
Q Consensus 44 ~t~Aiq~Ai~~a~~~~~g--~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 121 (392)
|-.-||+||+++ .+... -+++|.+|+|. ..+.+... |.+++|.++|.= ...|... +++...
T Consensus 286 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~ni~l~G~g~~------------~TiIt~~--~~~~~~ 348 (588)
T PLN02197 286 QFKTISQAVMAC-PDKNPGRCIIHIKAGIYN-EQVTIPKK-KNNIFMFGDGAR------------KTVISYN--RSVKLS 348 (588)
T ss_pred CcCCHHHHHHhc-cccCCceEEEEEeCceEE-EEEEccCC-CceEEEEEcCCC------------CeEEEec--cccccC
Confidence 466899999875 33222 36999999996 55655432 578888887620 0111111 111000
Q ss_pred ccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCc----cEEEEe-ceecEEEEeEEEECCCCCCCC
Q 046411 122 GGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQL----SHLVIS-SCNNVIVRNVKFIAPAESPNT 196 (392)
Q Consensus 122 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~ 196 (392)
+|.. . .+ ..-.....+++..++++|+|... ..+-+. .++...+.+|+|.+..+.
T Consensus 349 ----~g~~-T------------~~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDT--- 407 (588)
T PLN02197 349 ----PGTT-T------------SL-SGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDT--- 407 (588)
T ss_pred ----CCCc-c------------cc-eeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcc---
Confidence 1100 0 00 11233357888888888888532 223222 456666777777665432
Q ss_pred CeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 046411 197 DGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCG 238 (392)
Q Consensus 197 DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~ 238 (392)
+.... .+-.+++|+|...=|-| +. .....++||.+.
T Consensus 408 --Ly~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~ 443 (588)
T PLN02197 408 --LYVNN-GRQFYRNIVVSGTVDFI-FG--KSATVIQNSLIV 443 (588)
T ss_pred --eEecC-CCEEEEeeEEEeccccc-cc--ceeeeeecCEEE
Confidence 22222 34566666666543433 11 224566666654
No 73
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.13 E-value=0.009 Score=53.37 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=69.0
Q ss_pred EeeCceEEEeEEEec---------------CCccEEEEeceecEEEEeEEEECCCC---CCCCCe-eeee-ccccEEEEc
Q 046411 152 NSANNVIVSGLTSIN---------------SQLSHLVISSCNNVIVRNVKFIAPAE---SPNTDG-IHVE-SSTGVTITG 211 (392)
Q Consensus 152 ~~~~nv~I~~v~i~~---------------~~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DG-i~~~-~s~nv~I~n 211 (392)
.+++||.|++++++. ....++.+..++||-|++|++....+ ....|| +++. .+.+|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 478888888888877 23457888899999999999976521 111455 6765 478999999
Q ss_pred eEEecCCceEEeCCC-------ceeEEEEeeEEecCce--eEEeeccccCCCCCeEeEEEEeeEEeC-CceeEEEE
Q 046411 212 GTIQTGDDCISVGRG-------TRNLHMSNIKCGPGHG--VSIGSLGKDLNEDGVENVTLTNSVFTG-SDNGVRIK 277 (392)
Q Consensus 212 ~~i~~~dD~i~~~~~-------s~ni~I~n~~~~~~~g--i~iGs~~~~~~~~~i~ni~i~n~~~~~-~~~gi~i~ 277 (392)
|.|.+.+.+..+.+. ..++++.+|.+..... -.+. .-.+.+-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r----------~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVR----------FGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEEC----------SCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCccc----------ccEEEEEEeeeECCCCEEEEcc
Confidence 999864333222221 2689999999864321 1221 1246666665544 44666554
No 74
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.51 E-value=0.0025 Score=44.22 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=22.3
Q ss_pred ccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEE
Q 046411 36 AKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNA 76 (392)
Q Consensus 36 a~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l 76 (392)
|+|||++|||+||.+||++. +.|..+=--.=+|.+..|
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeC
Confidence 68999999999999999754 555555544445777665
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.2 Score=47.08 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEEeeCCCCcc--eEEEEee
Q 046411 43 DSTQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAVFRGPCKSR--ITVQISG 92 (392)
Q Consensus 43 D~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~l~~~~ks~--v~l~~~G 92 (392)
++-..||+|+|+|..+.. --.+.+-+|.|. +.+.++ ++. ++|++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp---~~~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVP---AAPGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEec---CCCCceeEEecC
Confidence 667789999998743333 245677899994 556554 344 8887764
No 76
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.17 E-value=1.4 Score=42.93 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=87.4
Q ss_pred EEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCce-EEEE-EEEeeCCCCcceEEEEee-EEEec-CCccccC-
Q 046411 30 NVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGR-YLIK-NAVFRGPCKSRITVQISG-TIVAP-NDYRALG- 104 (392)
Q Consensus 30 ~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~-Y~~~-~l~l~~~~ks~v~l~~~G-~l~~~-~~~~~~~- 104 (392)
.|+.|=..|+. | +.+||+.- ..|.+-||. |.+. ++.++ +-..|.+.| +++.. ++...+.
T Consensus 45 qvkt~~~~P~e--D----le~~I~~h------aKVaL~Pg~~Y~i~~~V~I~----~~cYIiGnGA~V~v~~~~~~~f~v 108 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQH------AKVALRPGAVYVIRKPVNIR----SCCYIIGNGATVRVNGPDRVAFRV 108 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHhc------CEEEeCCCCEEEEeeeEEec----ceEEEECCCEEEEEeCCCCceEEE
Confidence 47777777763 3 34445432 246666666 9875 58884 668888877 44432 1111111
Q ss_pred ---CCCcEEEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEE
Q 046411 105 ---KSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVI 181 (392)
Q Consensus 105 ---~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~ 181 (392)
.-.|.| .+..+|++..-.+++.+. ...+.+....++.+.|+.|.+..+-++... ....
T Consensus 109 ~~~~~~P~V--~gM~~VtF~ni~F~~~~~---------------~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~--~~~~ 169 (386)
T PF01696_consen 109 CMQSMGPGV--VGMEGVTFVNIRFEGRDT---------------FSGVVFHANTNTLFHGCSFFGFHGTCLESW--AGGE 169 (386)
T ss_pred EcCCCCCeE--eeeeeeEEEEEEEecCCc---------------cceeEEEecceEEEEeeEEecCcceeEEEc--CCcE
Confidence 001221 123444444433333221 124556666777777777777665555544 3566
Q ss_pred EEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecC
Q 046411 182 VRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPG 240 (392)
Q Consensus 182 i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~ 240 (392)
++++++.+.. -|+.-.+-..+.|++|.|...-=||...+ +..|++|.+.+.
T Consensus 170 VrGC~F~~C~-----~gi~~~~~~~lsVk~C~FekC~igi~s~G---~~~i~hn~~~ec 220 (386)
T PF01696_consen 170 VRGCTFYGCW-----KGIVSRGKSKLSVKKCVFEKCVIGIVSEG---PARIRHNCASEC 220 (386)
T ss_pred EeeeEEEEEE-----EEeecCCcceEEeeheeeeheEEEEEecC---CeEEecceeccc
Confidence 6666665542 23444444556666666665443443322 455555555443
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.60 E-value=0.45 Score=42.61 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCeeeeeccccEEEEceEEec-CCceEEeCCCceeEEEEeeEE
Q 046411 196 TDGIHVESSTGVTITGGTIQT-GDDCISVGRGTRNLHMSNIKC 237 (392)
Q Consensus 196 ~DGi~~~~s~nv~I~n~~i~~-~dD~i~~~~~s~ni~I~n~~~ 237 (392)
.||||..+ +-+|+|+++.. ++|+++++..+..++|.+.-.
T Consensus 75 ~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga 115 (215)
T PF03211_consen 75 ADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGA 115 (215)
T ss_dssp TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEE
T ss_pred cCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcc
Confidence 46666666 56666666654 566777666443444444433
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.10 E-value=2.4 Score=38.04 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=87.0
Q ss_pred eEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccc-cEEEEceEEecCCceEEeCC
Q 046411 147 RSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESST-GVTITGGTIQTGDDCISVGR 225 (392)
Q Consensus 147 ~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~~dD~i~~~~ 225 (392)
.++.+. +..+|+++.|-.+...+||-.+ +-+|+||+.+.-. -|.+.+.+.. .++|.+.-.++.+|-+.-..
T Consensus 55 ~vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedVc----EDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N 126 (215)
T PF03211_consen 55 PVFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDVC----EDAATFKGDGGTVTIIGGGARNASDKVFQHN 126 (215)
T ss_dssp -SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-S----SESEEEESSEEEEEEESTEEEEEEEEEEEE-
T ss_pred eEEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecccc----eeeeEEcCCCceEEEeCCcccCCCccEEEec
Confidence 345554 7889999999777778999887 7889999988643 5788888866 88999999998888765555
Q ss_pred CceeEEEEeeEEecCceeEEeeccccCCC-CCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEE
Q 046411 226 GTRNLHMSNIKCGPGHGVSIGSLGKDLNE-DGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQN 294 (392)
Q Consensus 226 ~s~ni~I~n~~~~~~~gi~iGs~~~~~~~-~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~n 294 (392)
+...++|+|.+... .|--+=|-|.-... +.-+++.+++........-..|...++ +...|+++.++.
T Consensus 127 g~Gtv~I~nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 127 GGGTVTIKNFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp SSEEEEEEEEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred CceeEEEEeEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 56678888866532 23112222221112 245667777766554433455555443 566666666665
No 79
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=94.25 E-value=5.9 Score=38.72 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=46.7
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecC-CceEEeCCCceeEEEEeeEEecC-ceeEEeeccccC
Q 046411 175 SSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTG-DDCISVGRGTRNLHMSNIKCGPG-HGVSIGSLGKDL 252 (392)
Q Consensus 175 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~-dD~i~~~~~s~ni~I~n~~~~~~-~gi~iGs~~~~~ 252 (392)
.+-.+|++.|+++...+ ...|+-+....++++++|.|.+- ..++.... ...|+.|+|..+ .|+.-
T Consensus 118 ~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~~------- 184 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIVS------- 184 (386)
T ss_pred eeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEeec-------
Confidence 34456666677666543 12355666667777777777653 23443333 455777776543 23321
Q ss_pred CCCCeEeEEEEeeEEeCCceeE
Q 046411 253 NEDGVENVTLTNSVFTGSDNGV 274 (392)
Q Consensus 253 ~~~~i~ni~i~n~~~~~~~~gi 274 (392)
.+...+.+++|.|....-|+
T Consensus 185 --~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 --RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred --CCcceEEeeheeeeheEEEE
Confidence 23355666666666665554
No 80
>PLN02480 Probable pectinesterase
Probab=93.69 E-value=2.9 Score=40.47 Aligned_cols=111 Identities=7% Similarity=0.020 Sum_probs=75.4
Q ss_pred ceecEEEEeEEEECCCC-----CCCCCeeee-eccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeecc
Q 046411 176 SCNNVIVRNVKFIAPAE-----SPNTDGIHV-ESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLG 249 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~-----~~n~DGi~~-~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~ 249 (392)
..++++++|++|.+... .....++-+ ..+.++.++||.|....|-+-... ..-.++||++++.-.+-+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 46789999999987631 112345555 346899999999999888876443 46789999998776766664
Q ss_pred ccCCCCCeEeEEEEeeEEeCCc------eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 250 KDLNEDGVENVTLTNSVFTGSD------NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 250 ~~~~~~~i~ni~i~n~~~~~~~------~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++.... .| .|..... ....-....|.||++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G-~ITA~~r-~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYG-SITAHNR-ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCce-EEEcCCC-CCCCCCEEEEECCEEccc
Confidence 35678899887542 13 2433322 113335678999998763
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.32 E-value=0.23 Score=32.46 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=16.7
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEe
Q 046411 173 VISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQ 215 (392)
Q Consensus 173 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 215 (392)
.+..+.+.+|++.++.. +.+||++..+.+-+|+++.+.
T Consensus 3 ~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 3 YLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 33344444444444443 123455544444444444443
No 82
>PLN02176 putative pectinesterase
Probab=91.09 E-value=7 Score=37.76 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=74.0
Q ss_pred ceecEEEEeEEEECCCCC------CCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeec
Q 046411 176 SCNNVIVRNVKFIAPAES------PNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSL 248 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~------~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~ 248 (392)
.++++..+|++|.+.... .....+-+. ......+.||.|....|-+-... ..-.+++|++++.-.+-+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~- 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY- 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC-
Confidence 477899999999876321 112333322 24889999999999888876554 46789999998877776764
Q ss_pred cccCCCCCeEeEEEEeeEEeCCc-------eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 249 GKDLNEDGVENVTLTNSVFTGSD-------NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 249 ~~~~~~~~i~ni~i~n~~~~~~~-------~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++.... ..-.|..........-....|.||++...
T Consensus 197 ---------a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 197 ---------AQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ---------ceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccC
Confidence 35678999887431 11233332211223345688999999864
No 83
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.03 E-value=0.44 Score=31.03 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=29.6
Q ss_pred eeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 046411 198 GIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCG 238 (392)
Q Consensus 198 Gi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~ 238 (392)
||.++.+.+.+|+++.+....++|.+.. +++.+|+++.+.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEE
Confidence 5777777888888888887777887776 456666666664
No 84
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.93 E-value=0.88 Score=44.95 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=22.0
Q ss_pred CeEeEEEEeeEEeCCceeEEE-EeecCC---CCeeEEceEEEEEEEecCCccEEEEe
Q 046411 256 GVENVTLTNSVFTGSDNGVRI-KSWARP---SRSFVRNVFFQNIIMRNVKNPILIDQ 308 (392)
Q Consensus 256 ~i~ni~i~n~~~~~~~~gi~i-~~~~~~---~~g~i~nI~~~ni~i~~~~~~i~i~~ 308 (392)
.|.|-+|++++-.....++.+ ...+++ .-..++|+.+.+.++-++..+|.+..
T Consensus 274 ~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 274 TIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESST
T ss_pred EEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCceEEcc
Confidence 455555555543333344442 222211 11356777777777776666665543
No 85
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=90.62 E-value=1.3 Score=41.15 Aligned_cols=78 Identities=26% Similarity=0.316 Sum_probs=43.6
Q ss_pred eeeeeccccEEEEceEEecC----------Cc-eEEeCCCceeEEEEeeEEecCceeEEeec---cccCCCCCeEeEEEE
Q 046411 198 GIHVESSTGVTITGGTIQTG----------DD-CISVGRGTRNLHMSNIKCGPGHGVSIGSL---GKDLNEDGVENVTLT 263 (392)
Q Consensus 198 Gi~~~~s~nv~I~n~~i~~~----------dD-~i~~~~~s~ni~I~n~~~~~~~gi~iGs~---~~~~~~~~i~ni~i~ 263 (392)
=+|+.+.++..|+|..-++- |. .+++.. +.|.+|+|..+.++.|+-||-. |.|. .-.+|+.+.
T Consensus 261 lvhvengkhfvirnvkaknitpdfskkagidnatvaiyg-cdnfvidni~mvnsagmligygvikg~yl--sipqnfkln 337 (464)
T PRK10123 261 LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYG-CDNFVIDNIEMINSAGMLIGYGVIKGKYL--SIPQNFKLN 337 (464)
T ss_pred eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEc-ccceEEeccccccccccEEEeeeeeccEe--cccccceec
Confidence 35666666666666666542 11 233333 6777788877777777655432 2221 124566666
Q ss_pred eeEEeCCc-----eeEEEEe
Q 046411 264 NSVFTGSD-----NGVRIKS 278 (392)
Q Consensus 264 n~~~~~~~-----~gi~i~~ 278 (392)
|+.+.+.. .||.|.+
T Consensus 338 ~i~ldn~~l~yklrgiqiss 357 (464)
T PRK10123 338 NIQLDNTHLAYKLRGIQISA 357 (464)
T ss_pred eEeecccccceeeeeeEecc
Confidence 66665543 4666643
No 86
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=89.59 E-value=12 Score=34.37 Aligned_cols=104 Identities=25% Similarity=0.317 Sum_probs=55.2
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEec-CCceEEeCCCceeEEEEeeEEecCceeEEeeccc
Q 046411 172 LVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQT-GDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGK 250 (392)
Q Consensus 172 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~ 250 (392)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.+ ..++|.+. ++.
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~---------------------g~~-- 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVT---------------------GTS-- 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEE---------------------eee--
Confidence 344456677888888887621 12345666664 66666666654 23333221 110
Q ss_pred cCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEE
Q 046411 251 DLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILID 307 (392)
Q Consensus 251 ~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~ 307 (392)
-...+.+++|+++.+.....|+.+..... + +. ..++|..+++...+|.+.
T Consensus 146 --~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 146 --ANPGINGNVISGNSIYFNKTGISISDNAA---P-VE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred --cCCcccceEeecceEEecCcCeEEEcccC---C-cc-ceeeccEEEeCCcCeEee
Confidence 02345666677777766666776654321 1 22 233555555555565544
No 87
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=88.89 E-value=7 Score=39.88 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=22.2
Q ss_pred ccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEe
Q 046411 205 TGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIG 246 (392)
Q Consensus 205 ~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iG 246 (392)
.+..+.+|.|....|-+-...+ .-.+++|++.+.-.+-+|
T Consensus 298 D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG 337 (497)
T PLN02698 298 DHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFG 337 (497)
T ss_pred CcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEec
Confidence 5666666666665565544432 345666666655455454
No 88
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=88.78 E-value=6 Score=41.05 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=71.6
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.||.|....|-+-.++ ..-.++||++.+.-.+-+|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------- 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------- 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc-------
Confidence 456788888888765422222333332 34788899999988888776554 34568899988776776664
Q ss_pred CCeEeEEEEeeEEeCCce----eEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 255 DGVENVTLTNSVFTGSDN----GVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++.-... .-.|..........-..+.|.||++....
T Consensus 414 ---a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 414 ---SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ---ceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 356788888864311 12333322223344567889999988643
No 89
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=88.78 E-value=19 Score=35.48 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=6.5
Q ss_pred EEEEeeCceEEEe
Q 046411 149 ITINSANNVIVSG 161 (392)
Q Consensus 149 i~~~~~~nv~I~~ 161 (392)
..|..|.++++.+
T Consensus 169 ylf~~c~~~k~~~ 181 (549)
T PF09251_consen 169 YLFRGCHHCKVID 181 (549)
T ss_dssp EEEES-ECEEEES
T ss_pred eeecccceEEEec
Confidence 4555666655543
No 90
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=88.69 E-value=22 Score=35.43 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=47.6
Q ss_pred cccEEEEceEEecCCceEEeCCC----------ceeEEEEeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCce-
Q 046411 204 STGVTITGGTIQTGDDCISVGRG----------TRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDN- 272 (392)
Q Consensus 204 s~nv~I~n~~i~~~dD~i~~~~~----------s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~- 272 (392)
...+.+.+|.|....|-+-.... .....++||++++.-.+-+|. -...|+||++.....
T Consensus 237 GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~----------g~AvFenC~I~s~~~~ 306 (422)
T PRK10531 237 GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGR----------GAVVFDNTEFRVVNSR 306 (422)
T ss_pred CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEEccC----------ceEEEEcCEEEEecCC
Confidence 36777777777777776654210 125677788877666665554 245577777655321
Q ss_pred ---eEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 273 ---GVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 273 ---gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
.-.|... ......-....|.||++...
T Consensus 307 ~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 307 TQQEAYVFAP-ATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred CCCceEEEec-CCCCCCCCEEEEECCEEecC
Confidence 1222221 11122334567788887764
No 91
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=86.29 E-value=13 Score=36.69 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=34.3
Q ss_pred eeEEEEeeEEecCceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 228 RNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 228 ~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
.|..|+|....++.|+-+|-.| ..+.++||++++|. ..|+.++.. +-.|.||++-++
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~~----g~G~~~~~~---------~~~ftNitvId~ 367 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDCA----GAGIFIRGT---------NKVFTNITVIDT 367 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-S----SESEEEECC---------S-EEEEEEEES-
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeeccc----CCceEEeec---------CCceeeeEEEec
Confidence 5888999998888888776554 34678888888873 467777643 245666666543
No 92
>PLN02197 pectinesterase
Probab=86.25 E-value=16 Score=38.08 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=73.7
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCC
Q 046411 175 SSCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLN 253 (392)
Q Consensus 175 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~ 253 (392)
...+++..+|++|.+.........+-+. .+....+.+|.|....|-+-.+++ .-.+++|++++.-.+-+|..
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 433 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGKS----- 433 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccce-----
Confidence 3567888888888875422223344433 258899999999998888776653 55899999987766666642
Q ss_pred CCCeEeEEEEeeEEeCCc--ee--EEEEeecCCC-CeeEEceEEEEEEEecCC
Q 046411 254 EDGVENVTLTNSVFTGSD--NG--VRIKSWARPS-RSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 254 ~~~i~ni~i~n~~~~~~~--~g--i~i~~~~~~~-~g~i~nI~~~ni~i~~~~ 301 (392)
...|+||++.-.. .+ -.|....... ...-..+.|.||++....
T Consensus 434 -----~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 -----ATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -----eeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 3678888876421 11 1333221111 234457899999998743
No 93
>PLN02773 pectinesterase
Probab=85.96 E-value=21 Score=34.22 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=77.9
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCC
Q 046411 175 SSCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLN 253 (392)
Q Consensus 175 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~ 253 (392)
..++++..+|++|.+.........+-+. ....+.+.||.|....|.+-.+. ..-.++||++++.-.+-+|.
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~------ 170 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN------ 170 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec------
Confidence 3577999999999876432222333332 24889999999999999887664 36889999999877777775
Q ss_pred CCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 254 EDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 254 ~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|++|++.....| .|..........-....|.||++....
T Consensus 171 ----g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 ----STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ----cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCC
Confidence 3578999999765444 343321111122345789999998754
No 94
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=85.94 E-value=32 Score=35.76 Aligned_cols=112 Identities=12% Similarity=0.069 Sum_probs=53.6
Q ss_pred eecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCC
Q 046411 177 CNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNED 255 (392)
Q Consensus 177 ~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~ 255 (392)
.+++..+|++|.+.........+-+. .+....+.+|.|....|-+-..++ .-.+++|++++.-.+-+|.
T Consensus 339 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~-------- 408 (566)
T PLN02713 339 GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGN-------- 408 (566)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceeccc--------
Confidence 45566666666554321122222221 235566666666666665554432 3456666666555554543
Q ss_pred CeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 256 GVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 256 ~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||.+.... ..-.|..........-..+.|.||++...
T Consensus 409 --a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 --AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred --ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 24556666664321 01122222111222334566777777653
No 95
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=85.17 E-value=41 Score=34.81 Aligned_cols=114 Identities=10% Similarity=0.064 Sum_probs=61.9
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+-..+ ..-.++||++.+.-.+-+|.
T Consensus 311 ~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~------- 381 (538)
T PLN03043 311 SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN------- 381 (538)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec-------
Confidence 446677777777664322222333332 23567777777777766665444 24567777777665665654
Q ss_pred CCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 255 DGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++.-.. ..-.|....+.....-..+.|.||++....
T Consensus 382 ---a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~ 429 (538)
T PLN03043 382 ---AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAP 429 (538)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCC
Confidence 24567777775421 111233221222233456778888887643
No 96
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=82.28 E-value=52 Score=34.42 Aligned_cols=113 Identities=10% Similarity=0.104 Sum_probs=56.2
Q ss_pred eecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCC
Q 046411 177 CNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNED 255 (392)
Q Consensus 177 ~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~ 255 (392)
.+++..+|++|.+.........+-+. .+....+.+|.|....|.+-.+++ .-.+++|++.+.-.+-+|.
T Consensus 361 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~-------- 430 (587)
T PLN02313 361 GERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN-------- 430 (587)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc--------
Confidence 45566666666554321112222221 235666666666666665544442 3366666666555554543
Q ss_pred CeEeEEEEeeEEeCCce----eEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 256 GVENVTLTNSVFTGSDN----GVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 256 ~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++.-... .-.|....+.....-..+.|.||++....
T Consensus 431 --a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 --AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred --eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 345566666653210 01232221122233456777777776543
No 97
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=81.89 E-value=65 Score=34.22 Aligned_cols=113 Identities=10% Similarity=0.098 Sum_probs=56.0
Q ss_pred eecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCC
Q 046411 177 CNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNED 255 (392)
Q Consensus 177 ~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~ 255 (392)
.+++..+|++|.+.........+-+. ......+.||.|....|-+..+. ..-.+++|++.+.-.+-+|.
T Consensus 336 g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 405 (670)
T PLN02217 336 GDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD-------- 405 (670)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC--------
Confidence 44566666666654321122223222 23566666666666666554443 24466666666555554543
Q ss_pred CeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 256 GVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 256 ~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++.-.. ..-.|..........-..+.|.||++....
T Consensus 406 --a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 406 --AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred --ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCc
Confidence 23556666665321 112233221112233455777777776643
No 98
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=80.45 E-value=75 Score=32.78 Aligned_cols=113 Identities=9% Similarity=0.100 Sum_probs=61.6
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+-..++ .-.+++|++++.-.+-+|.
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~------- 373 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN------- 373 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC-------
Confidence 345677777777665322122333332 246777777777777776654442 4467777777666665654
Q ss_pred CCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 255 DGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||.+.-.. ..-.|....+.....-....|.||++...
T Consensus 374 ---a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ---AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ---ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 23556777765321 11123322211223334677888888764
No 99
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=79.88 E-value=79 Score=32.72 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=66.5
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCC
Q 046411 175 SSCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLN 253 (392)
Q Consensus 175 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~ 253 (392)
...+++..+|++|.+.........+-+. ...++.+.||.|....|-+-..+ ..-.++||++.+.-.+-+|.
T Consensus 316 v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~------ 387 (537)
T PLN02506 316 VSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN------ 387 (537)
T ss_pred EEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC------
Confidence 3466777888888765422222333332 24778888888888777766554 34578888887766666654
Q ss_pred CCCeEeEEEEeeEEeCCce----eEEEEeecCCCCeeEEceEEEEEEEec
Q 046411 254 EDGVENVTLTNSVFTGSDN----GVRIKSWARPSRSFVRNVFFQNIIMRN 299 (392)
Q Consensus 254 ~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~i~~ 299 (392)
-...|+||++..... .-.|....+.....-..+.|.||++..
T Consensus 388 ----a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 388 ----GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred ----ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEcc
Confidence 246677777764311 123333211122233567788888775
No 100
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=79.53 E-value=82 Score=32.67 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=61.6
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+..+.+.+|.|....|-+-.++ ..-.+++|++++.-.+-+|.
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 385 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN------- 385 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc-------
Confidence 456777777777665322222333322 23677777777777777665443 34577777777665655554
Q ss_pred CCeEeEEEEeeEEeCCce--e--EEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 255 DGVENVTLTNSVFTGSDN--G--VRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~~--g--i~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++.-... + -.|..........-....|.||++...
T Consensus 386 ---a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 ---AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ---ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 245677777654311 0 123222111222335677888888754
No 101
>PLN02314 pectinesterase
Probab=78.67 E-value=91 Score=32.70 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=64.6
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.||.|....|-+-..++ .-.++||++.+.-.+-+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~------- 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN------- 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC-------
Confidence 456677777777665322222233332 246677788888777776655542 3567778877666665654
Q ss_pred CCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 255 DGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||.+.-.. ..-.|..........-..+.|.||++....
T Consensus 434 ---a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ---AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 34567777775421 011233222122344456788888887654
No 102
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=77.63 E-value=93 Score=32.28 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=62.5
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.||.|....|-+-.+++ .-.++||++.+.-.+-+|.
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 391 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFGN------- 391 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceeccc-------
Confidence 456677777777664321122233322 246777777777777776655542 3477777777665655554
Q ss_pred CCeEeEEEEeeEEeCCce----eEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 255 DGVENVTLTNSVFTGSDN----GVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++.-... .-.|....+.....-..+.|.||++...
T Consensus 392 ---a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 ---AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred ---ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 245677777654311 1123222112223445677888888764
No 103
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=76.74 E-value=93 Score=31.83 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=67.9
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+-..+ ..-.+++|++++.-.+-+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 355677777777765422222333332 24778888888887777765554 35678888887766666654
Q ss_pred CCeEeEEEEeeEEeCCce----eEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 255 DGVENVTLTNSVFTGSDN----GVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++..... .-.|..........-..+.|.||++....
T Consensus 353 ---a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 ---AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 356788888764311 12343332222233456888888887654
No 104
>PLN02916 pectinesterase family protein
Probab=75.87 E-value=99 Score=31.68 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=63.2
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+-..++ .-.+++|++++.-.+-+|.
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 345 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD------- 345 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC-------
Confidence 345677777777665322222333332 246777777777777776655542 4567777777666665654
Q ss_pred CCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 255 DGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++.-.. ..-.|..........-....|.||++...
T Consensus 346 ---a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 346 ---AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred ---ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 34567777765421 11233322111223345677888888764
No 105
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=75.76 E-value=1e+02 Score=31.78 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=64.0
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.||.|....|-+-..++ .-.+++|++++.-.+-+|.
T Consensus 291 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 361 (520)
T PLN02201 291 SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD------- 361 (520)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC-------
Confidence 456677777777765422222333332 246777888888777777665542 3567778877666665654
Q ss_pred CCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 255 DGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++.... ..-.|..........-....|.||++...
T Consensus 362 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ---ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ---ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 24567777776421 11223332221223345677888888754
No 106
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.17 E-value=2.3 Score=33.02 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=9.8
Q ss_pred CchhhhHHHHHHHH-HHHHhh
Q 046411 1 MAAAKLITISCVVS-VFLIFF 20 (392)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~ 20 (392)
|..+.++++.++++ +||+++
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 77555555544443 334433
No 107
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=73.35 E-value=1.3e+02 Score=31.72 Aligned_cols=114 Identities=8% Similarity=0.070 Sum_probs=64.1
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.||.|....|-+-... ..-.++||++.+.-.+-+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 456777777777764321122223322 24677888888877777665443 34677888877665665654
Q ss_pred CCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 255 DGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++.-.. ..-.|..........-..+.|.||++....
T Consensus 441 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 ---AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ---eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 35567777775421 011333221112233456778888887643
No 108
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=72.12 E-value=68 Score=28.08 Aligned_cols=15 Identities=13% Similarity=-0.201 Sum_probs=8.5
Q ss_pred ceeEEEEeeEEecCc
Q 046411 227 TRNLHMSNIKCGPGH 241 (392)
Q Consensus 227 s~ni~I~n~~~~~~~ 241 (392)
=.|.+|+|+.|.+..
T Consensus 63 F~ntlIENNVfDG~y 77 (198)
T PF08480_consen 63 FYNTLIENNVFDGVY 77 (198)
T ss_pred ccccEEEeeeecccc
Confidence 345566666665543
No 109
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=71.65 E-value=32 Score=30.05 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=32.4
Q ss_pred ccEEEEceEEecC-CceEEe--------CCCceeEEEEeeEEecC---ce--eEEeeccccCCCCCeEeEEEEeeEEeCC
Q 046411 205 TGVTITGGTIQTG-DDCISV--------GRGTRNLHMSNIKCGPG---HG--VSIGSLGKDLNEDGVENVTLTNSVFTGS 270 (392)
Q Consensus 205 ~nv~I~n~~i~~~-dD~i~~--------~~~s~ni~I~n~~~~~~---~g--i~iGs~~~~~~~~~i~ni~i~n~~~~~~ 270 (392)
.+|.|-|..+.+- .-+|=+ ++..+||+|.++.|... .. ..-|-. ..+..|.+|||+.|.+.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv-----~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIV-----TSGFYNTLIENNVFDGV 76 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEE-----eccccccEEEeeeeccc
Confidence 3566667766541 112211 12245788888777632 11 111221 23566777777777776
Q ss_pred c
Q 046411 271 D 271 (392)
Q Consensus 271 ~ 271 (392)
.
T Consensus 77 y 77 (198)
T PF08480_consen 77 Y 77 (198)
T ss_pred c
Confidence 3
No 110
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=70.74 E-value=1e+02 Score=31.62 Aligned_cols=139 Identities=9% Similarity=0.030 Sum_probs=83.5
Q ss_pred EeeCceEEEeEEEecCCc----cEEEEe-ceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCC
Q 046411 152 NSANNVIVSGLTSINSQL----SHLVIS-SCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRG 226 (392)
Q Consensus 152 ~~~~nv~I~~v~i~~~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~ 226 (392)
...+++..++++|+|... ..+-+. ..+...+.+|+|.+..+. +.... .+-.+++|+|...=|-|- .
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDT-----Ly~~~-~rqyy~~C~I~G~vDFIF-G-- 337 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDT-----LYAAA-LRQFYRECDIYGTIDFIF-G-- 337 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccch-----heeCC-CcEEEEeeEEEeccceEe-c--
Confidence 467999999999998643 233332 588999999999986543 33333 456889999996656553 2
Q ss_pred ceeEEEEeeEEecC---ce--eEEeeccccCCCCCeEeEEEEeeEEeCCceeEE----EEeecCCCCeeEEceEEEEEEE
Q 046411 227 TRNLHMSNIKCGPG---HG--VSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVR----IKSWARPSRSFVRNVFFQNIIM 297 (392)
Q Consensus 227 s~ni~I~n~~~~~~---~g--i~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~----i~~~~~~~~g~i~nI~~~ni~i 297 (392)
.....++||.+..- .+ -.|=..+.. ....-.-+.|.||++........ .+.+=+.....-..+.|.+..|
T Consensus 338 ~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~l 416 (497)
T PLN02698 338 NAAAVFQNCYLFLRRPHGKSYNVILANGRS-DPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESYI 416 (497)
T ss_pred ccceeecccEEEEecCCCCCceEEEecCCC-CCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEeccc
Confidence 24678999998531 11 112111111 11234678999999987642111 1111122334456677777777
Q ss_pred ecC
Q 046411 298 RNV 300 (392)
Q Consensus 298 ~~~ 300 (392)
.+.
T Consensus 417 ~~~ 419 (497)
T PLN02698 417 DDA 419 (497)
T ss_pred CCc
Confidence 653
No 111
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=70.68 E-value=1.4e+02 Score=31.18 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=61.6
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.+++|++.+.-.+-+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-------
Confidence 345667777777654322122333332 24667777777777766665444 24566777777665655553
Q ss_pred CCeEeEEEEeeEEeCCce----eEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 255 DGVENVTLTNSVFTGSDN----GVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++.-... .-.|..........-..+.|.||++....
T Consensus 416 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 ---AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ---ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 245677777753211 12333221112223356778888887643
No 112
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=70.50 E-value=1.4e+02 Score=31.00 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=57.2
Q ss_pred eecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCC
Q 046411 177 CNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNED 255 (392)
Q Consensus 177 ~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~ 255 (392)
.+++..+|++|.+.........+-+. .+....+.+|.|....|-+-.++ ..-.+++|++++.-.+-+|.
T Consensus 311 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 380 (539)
T PLN02995 311 GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN-------- 380 (539)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc--------
Confidence 45566666666654321122333322 23666777777776666554443 23467777776655555553
Q ss_pred CeEeEEEEeeEEeCCce----eEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 256 GVENVTLTNSVFTGSDN----GVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 256 ~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++..... .-.|....+.....-..+.|.||++...
T Consensus 381 --a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 --AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred --cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecC
Confidence 244566666654210 1123222111223345677778877764
No 113
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=68.43 E-value=1.5e+02 Score=30.60 Aligned_cols=115 Identities=9% Similarity=0.124 Sum_probs=71.1
Q ss_pred eceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCC
Q 046411 175 SSCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLN 253 (392)
Q Consensus 175 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~ 253 (392)
...+++..+|++|.+.........+-+. ......+.+|.|....|-+-..++ .-.+++|++.+.-.+-+|.
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 381 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFGN------ 381 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceeccc------
Confidence 3566788888888776422222333332 247788888999888887765543 4577888888776666654
Q ss_pred CCCeEeEEEEeeEEeCCce---eEEEEeecCCCCeeEEceEEEEEEEecCC
Q 046411 254 EDGVENVTLTNSVFTGSDN---GVRIKSWARPSRSFVRNVFFQNIIMRNVK 301 (392)
Q Consensus 254 ~~~i~ni~i~n~~~~~~~~---gi~i~~~~~~~~g~i~nI~~~ni~i~~~~ 301 (392)
-...|+||++..... .-.|....+.....-....|.||++....
T Consensus 382 ----a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 ----SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred ----ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 346688888765321 12343322122234456889999998743
No 114
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=67.39 E-value=1.7e+02 Score=30.76 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=61.0
Q ss_pred ceecEEEEeEEEECCCCCCCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCC
Q 046411 176 SCNNVIVRNVKFIAPAESPNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~ 254 (392)
..+++..+|++|.+.........+-+. ......+.||.|....|-+-..+ ..-.+++|++.+.-.+-+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc-------
Confidence 355666777777654321122233322 23667777777777766665444 24567777776665555554
Q ss_pred CCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecC
Q 046411 255 DGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNV 300 (392)
Q Consensus 255 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~ 300 (392)
-...|+||++.-.. ..-.|..........-..+.|.||++...
T Consensus 429 ---a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 ---AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ---ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 24567777775421 11233322111223345677888888754
No 115
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=63.56 E-value=1.9e+02 Score=30.09 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=49.0
Q ss_pred ccEEEEceEEecC-----CceEEeCCCceeEEEEeeEEecCce-eEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEe
Q 046411 205 TGVTITGGTIQTG-----DDCISVGRGTRNLHMSNIKCGPGHG-VSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKS 278 (392)
Q Consensus 205 ~nv~I~n~~i~~~-----dD~i~~~~~s~ni~I~n~~~~~~~g-i~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~ 278 (392)
.++..+|.+|.|. .-++++...+..+.+.||.|.+-+. +...+ ..-++++|+|.++ --+-+..
T Consensus 330 ~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~----------~rq~y~~C~I~Gt-VDFIFG~ 398 (553)
T PLN02708 330 DGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS----------LRQFYKSCRIQGN-VDFIFGN 398 (553)
T ss_pred CCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC----------CceEEEeeEEeec-CCEEecC
Confidence 6777777777762 3578888778899999999876444 44322 1346888998886 2221211
Q ss_pred ecCCCCeeEEceEEEEEEEec
Q 046411 279 WARPSRSFVRNVFFQNIIMRN 299 (392)
Q Consensus 279 ~~~~~~g~i~nI~~~ni~i~~ 299 (392)
....|+||.+.-
T Consensus 399 ---------a~avfq~c~i~~ 410 (553)
T PLN02708 399 ---------SAAVFQDCAILI 410 (553)
T ss_pred ---------ceEEEEccEEEE
Confidence 236788888863
No 116
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=55.36 E-value=19 Score=33.47 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=34.8
Q ss_pred CchhhhHHHHHHHHHHHHhhhh-ccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCce----EEEEE
Q 046411 1 MAAAKLITISCVVSVFLIFFIT-LSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGR----YLIKN 75 (392)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~----Y~~~~ 75 (392)
|++++++++..++.+++.++.+ +.++-+.+|+..| .|-+||.+= -+...|++|+|. |-+++
T Consensus 2 ~~~~~~~l~~A~~A~~~~~~~a~A~~~Vv~SIKPl~-----------~iasaI~dG---Vg~p~vlvp~gASpHdYsLrP 67 (318)
T COG4531 2 MLHKKTLLLSALFALLLGSAPAAAAAAVVTSIKPLG-----------FIASAIADG---VGEPEVLLPGGASPHDYSLRP 67 (318)
T ss_pred cchHHHHHHHHHHHHHhccchhcccccceeeeccHH-----------HHHHHHHcc---CCCCceecCCCCCcccccCCh
Confidence 4455555555555554444433 4445566776665 566666431 234579999997 75443
No 117
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=54.14 E-value=15 Score=19.72 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=12.2
Q ss_pred EeEEEEeeEEeCCce-eEEEE
Q 046411 258 ENVTLTNSVFTGSDN-GVRIK 277 (392)
Q Consensus 258 ~ni~i~n~~~~~~~~-gi~i~ 277 (392)
.+++|+++++.+... |+.+.
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CCEEEECCEEEeCCCCcEEEe
Confidence 356666777666655 66554
No 118
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=52.73 E-value=24 Score=26.34 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=13.6
Q ss_pred CchhhhHHHHHHHHHHHHhhhh-ccCCceeEEe
Q 046411 1 MAAAKLITISCVVSVFLIFFIT-LSNAASYNVI 32 (392)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 32 (392)
|+.+-+++.+++..|+.++++. ....+.+.|.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKsKRSVtve 33 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKSKRSVTVE 33 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccccccccceeec
Confidence 4444434333444444333322 2345565554
No 119
>TIGR02001 gcw_chp conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.
Probab=51.16 E-value=5.7 Score=36.56 Aligned_cols=22 Identities=9% Similarity=0.056 Sum_probs=16.2
Q ss_pred eecCccCCCCcccHHHHHHHHH
Q 046411 32 ITFGAKPDGRTDSTQSFLRAWA 53 (392)
Q Consensus 32 ~d~Ga~~dg~tD~t~Aiq~Ai~ 53 (392)
.||=..|=.+++..+|||-.++
T Consensus 42 SdY~~RGisqt~~~pavQg~~~ 63 (243)
T TIGR02001 42 SDYVFRGVSQTNSDPAIQGGLD 63 (243)
T ss_pred EeeEEeCcccCCCCcEEEeEEE
Confidence 4676666667788888887775
No 120
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.43 E-value=63 Score=26.64 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHHhhcCC--CcEEEEcCceEEEEEEE
Q 046411 42 TDSTQSFLRAWAVACRSSQ--ASTIVVPKGRYLIKNAV 77 (392)
Q Consensus 42 tD~t~Aiq~Ai~~a~~~~~--g~~v~iP~G~Y~~~~l~ 77 (392)
.+++..||+|=... ...+ -...-+|||+|-+.-++
T Consensus 59 ~~~~~~f~ractsi-t~dpv~~~f~~Lk~G~YAvaa~q 95 (151)
T COG4704 59 MSDPSRFQRACTSI-TGDPVSKSFYGLKPGKYAVAAFQ 95 (151)
T ss_pred CCCchHHhhhcccc-cCCchhheeecCCCccEEEEEEE
Confidence 37788888874322 1111 13455899999877653
No 121
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=44.06 E-value=40 Score=31.02 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=18.2
Q ss_pred CCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEE-EEe
Q 046411 38 PDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKN-AVF 78 (392)
Q Consensus 38 ~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~-l~l 78 (392)
-+++--+-..+-+|+.+. |.|+|.++. |..
T Consensus 136 e~~vY~sF~~Lv~am~~n-----------p~Gty~LgadldA 166 (250)
T PF05342_consen 136 ENNVYYSFKELVQAMNAN-----------PSGTYKLGADLDA 166 (250)
T ss_pred cCCeEEcHHHHHHHHhhC-----------CCceEEECCccch
Confidence 334445556666666532 778998875 655
No 122
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=40.59 E-value=1.1e+02 Score=24.62 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=40.9
Q ss_pred EeeCceEEEeEEEecCC---ccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEc-eEEecCCceE
Q 046411 152 NSANNVIVSGLTSINSQ---LSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITG-GTIQTGDDCI 221 (392)
Q Consensus 152 ~~~~nv~I~~v~i~~~~---~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n-~~i~~~dD~i 221 (392)
..+.+..+.+-.+.+.. .+++.+..+.+..+.+.++. .. .. .+|++++.+.+..+.+ ..+....|++
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi 143 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGI 143 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcE
Confidence 55666677776666653 67777776665555555554 21 11 5788888777777776 4444445554
No 123
>PLN02671 pectinesterase
Probab=37.02 E-value=4.1e+02 Score=26.00 Aligned_cols=135 Identities=12% Similarity=0.170 Sum_probs=85.1
Q ss_pred EEEEeeCceEEEeEEEecCCc--------cEEEEe-ceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCc
Q 046411 149 ITINSANNVIVSGLTSINSQL--------SHLVIS-SCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDD 219 (392)
Q Consensus 149 i~~~~~~nv~I~~v~i~~~~~--------~~i~~~-~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD 219 (392)
-.....+++..++++|+|... ..+.+. ..+...+.+|++....+. +... ...-.+++|+|...=|
T Consensus 148 Tv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDT-----Ly~~-~gR~yf~~CyIeG~VD 221 (359)
T PLN02671 148 SVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDT-----LLDE-TGSHYFYQCYIQGSVD 221 (359)
T ss_pred EEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccc-----cEeC-CCcEEEEecEEEEecc
Confidence 344567999999999998721 223222 578999999999986643 3222 2467899999987666
Q ss_pred eEEeCCCceeEEEEeeEEecC---ce-eEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEE
Q 046411 220 CISVGRGTRNLHMSNIKCGPG---HG-VSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNI 295 (392)
Q Consensus 220 ~i~~~~~s~ni~I~n~~~~~~---~g-i~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni 295 (392)
-|- . .....+++|.+..- .| +.--+.. ....-.-..|.||++.+.. ...+. ...+.-..+.|.|+
T Consensus 222 FIF-G--~g~A~Fe~C~I~s~~~~~G~ITA~~r~---~~~~~~GfvF~~C~itg~g-~vyLG----RPW~~yarvVf~~t 290 (359)
T PLN02671 222 FIF-G--NAKSLYQDCVIQSTAKRSGAIAAHHRD---SPTEDTGFSFVNCVINGTG-KIYLG----RAWGNYSRTVYSNC 290 (359)
T ss_pred EEe-c--ceeEEEeccEEEEecCCCeEEEeeccC---CCCCCccEEEEccEEccCc-cEEEe----CCCCCCceEEEEec
Confidence 552 2 24688999998631 23 2221110 1123356899999998753 23332 12333467888888
Q ss_pred EEecC
Q 046411 296 IMRNV 300 (392)
Q Consensus 296 ~i~~~ 300 (392)
.|.+.
T Consensus 291 ~m~~~ 295 (359)
T PLN02671 291 FIADI 295 (359)
T ss_pred ccCCe
Confidence 88763
No 124
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=32.07 E-value=4.5e+02 Score=24.93 Aligned_cols=166 Identities=12% Similarity=0.105 Sum_probs=87.4
Q ss_pred eceecEEEEeEEEECCCCCCC--CCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccC
Q 046411 175 SSCNNVIVRNVKFIAPAESPN--TDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDL 252 (392)
Q Consensus 175 ~~~~nv~i~~~~i~~~~~~~n--~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~ 252 (392)
...+++..+|++|.+...... .-.+.+. ..++.+.+|.|....|-+-... ....++||++++.-.+-+|..
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~~---- 156 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGNG---- 156 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEESS----
T ss_pred ccccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECCe----
Confidence 356899999999987532111 2233443 4789999999999888887665 367899999998877777752
Q ss_pred CCCCeEeEEEEeeEEeCCc----eeEEEEeecCCCCeeEEceEEEEEEEecCCc--------cEEEEeecCCCCCCCCCC
Q 046411 253 NEDGVENVTLTNSVFTGSD----NGVRIKSWARPSRSFVRNVFFQNIIMRNVKN--------PILIDQNYCPNNQGCPNK 320 (392)
Q Consensus 253 ~~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~--------~i~i~~~~~~~~~~~~~~ 320 (392)
...|+||++.... ....|-.........-....|.||++..... ...+.. |.
T Consensus 157 ------~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGR---------pW- 220 (298)
T PF01095_consen 157 ------TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGR---------PW- 220 (298)
T ss_dssp ------EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE-----------S-
T ss_pred ------eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecC---------cc-
Confidence 4568888887532 1223433221122345668899999986532 222321 11
Q ss_pred CCceeEEeEEEEeEEEEeC--CCceEEEeeCCCCceecEEEEeEEEEecC
Q 046411 321 NSGVKISQVTYRNIQGTSA--TPKAVAFDCSSSNPCRGIKLQDIKLTYMN 368 (392)
Q Consensus 321 ~~~~~i~nitf~ni~~~~~--~~~~~~i~~~~~~~i~~i~f~ni~i~~~~ 368 (392)
.+...+.|.|-.+... .+....+.. ....+.+.|--..-.++|
T Consensus 221 ---~~~s~vvf~~t~m~~~I~p~GW~~w~~--~~~~~~~~f~Ey~~~GpG 265 (298)
T PF01095_consen 221 ---GPYSRVVFINTYMDDHINPEGWTPWSG--DPNTDTVYFAEYNNTGPG 265 (298)
T ss_dssp ---SEETEEEEES-EE-TTEETCES--EEE--TTTTTCEEEEEES-BCTT
T ss_pred ---cceeeEEEEccccCCeeeccCcccccc--cccccceEEEEECCcCCC
Confidence 1456778888766552 111222333 223345666655555665
No 125
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=28.78 E-value=54 Score=27.69 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=13.1
Q ss_pred CchhhhHHHHHHHHHHHHhh
Q 046411 1 MAAAKLITISCVVSVFLIFF 20 (392)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (392)
|++++++.++++++.+++++
T Consensus 1 Mkk~~l~~~~~~~~p~~~~A 20 (184)
T COG3054 1 MKKRKLLALLCLLLPMMASA 20 (184)
T ss_pred CchhhHHHHHHHHhHHHHHH
Confidence 77777666666666666554
No 126
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=28.08 E-value=6.4e+02 Score=25.44 Aligned_cols=220 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEeeCCCCcceEEEEe--eEEEecCCccccCCCCcEEEEEeeeEEEEEc-
Q 046411 46 QSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQIS--GTIVAPNDYRALGKSDRWILFIKVDRLSIIG- 122 (392)
Q Consensus 46 ~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~--G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G- 122 (392)
+-|.+|+...-...-.+.+++-+|+|....+.+. |+|.|.++ +.+ ++.|.++|
T Consensus 33 D~iEea~~~l~e~~~e~LIFlH~G~~e~~~i~I~----sdvqiiGAs~~di--------------------a~sVvle~~ 88 (625)
T KOG1777|consen 33 DHIEEALRFLDENDEEKLIFLHEGTHETETIRIT----SDVQIIGASPSDI--------------------ATSVVLEGR 88 (625)
T ss_pred hhHHHHhhhcccccccceEEEEeccccceEEEEc----CCeeEeccCCccc--------------------eeeEEEecc
Q ss_pred --cEEeCCCCceee----------------------------ccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEE
Q 046411 123 --GTLDGKGAGFWA----------------------------CRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHL 172 (392)
Q Consensus 123 --G~idg~g~~~~~----------------------------~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i 172 (392)
-++.-....|.. ..-.-.+....|.++.....-.=++....+.++..-++
T Consensus 89 ~~t~l~F~~~AY~Gy~Tvkf~~d~~h~~h~~ld~~~d~~p~ie~c~i~s~~~~g~Avcv~g~a~P~~~~c~isDceNvgl 168 (625)
T KOG1777|consen 89 HATTLEFQESAYVGYVTVKFEPDQEHHAHVCLDIEVDASPAIEECIIRSTGGVGAAVCVPGEAEPEIKLCAISDCENVGL 168 (625)
T ss_pred cccEEEEeecceEEEEEEEeccccccceeEEEeeccCCCcccccccccCCCccCcccccCCccCcceeecccccCcceeE
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecC--ceeEEeeccc
Q 046411 173 VISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPG--HGVSIGSLGK 250 (392)
Q Consensus 173 ~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~--~gi~iGs~~~ 250 (392)
.+..--.-.++++.|.... ..|+-+..--+=++++|++..|.|.-.+...-..-..++|.+... .|+.+...
T Consensus 169 yvTd~a~g~yEh~ei~~Na----lA~vwvknha~p~~R~~~ih~G~dvGiftf~hg~Gy~e~cd~~qnlisg~eVkf~-- 242 (625)
T KOG1777|consen 169 YVTDHAQGIYEHCEISRNA----LAGVWVKNHAFPTMRNCTIHHGRDVGIFTFEHGQGYFESCDIHQNLISGIEVKFR-- 242 (625)
T ss_pred EEEeccccceecchhcccc----ccceeeccccChhhhhceeecCCccceEEeccCcCCCccchHHHhhhcceEEEee--
Q ss_pred cCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEE----EEEecCCcc
Q 046411 251 DLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQN----IIMRNVKNP 303 (392)
Q Consensus 251 ~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~n----i~i~~~~~~ 303 (392)
-|=++-+|.+.....| .|....++.+-.++|=.+.| +.+.....|
T Consensus 243 -------anp~~~rcevhh~~~g-gi~vhedG~GqF~en~iyan~fAgvwits~snP 291 (625)
T KOG1777|consen 243 -------ANPIVLRCEVHHGKTG-GIYVHEDGLGQFLENSIYANNFAGVWITSNSNP 291 (625)
T ss_pred -------ccceEEEEEEeeCCCC-cEEEeecchhhhhhhhhhccccceeeeeccCCC
No 127
>PLN02304 probable pectinesterase
Probab=26.68 E-value=6.3e+02 Score=24.94 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=73.4
Q ss_pred ceecEEEEeEEEECCCCC-----CCCCeeeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeecc
Q 046411 176 SCNNVIVRNVKFIAPAES-----PNTDGIHVE-SSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLG 249 (392)
Q Consensus 176 ~~~nv~i~~~~i~~~~~~-----~n~DGi~~~-~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~ 249 (392)
..+++..+|++|.+.... .....+-+. ......+.+|.|....|.+-... ..-.++||++.+.-.+-+|.
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~-- 235 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGD-- 235 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEecc--
Confidence 467888999999875321 112233332 35889999999999888876554 35779999998877777765
Q ss_pred ccCCCCCeEeEEEEeeEEeCCce---------eEEEEeecCCCCeeEEceEEEEEEEec
Q 046411 250 KDLNEDGVENVTLTNSVFTGSDN---------GVRIKSWARPSRSFVRNVFFQNIIMRN 299 (392)
Q Consensus 250 ~~~~~~~i~ni~i~n~~~~~~~~---------gi~i~~~~~~~~g~i~nI~~~ni~i~~ 299 (392)
-...|++|++..... .-.|....+.....-....|.||++..
T Consensus 236 --------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 236 --------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred --------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 245788888875321 113433222223445678999999876
No 128
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=26.43 E-value=3.3e+02 Score=21.58 Aligned_cols=13 Identities=38% Similarity=0.463 Sum_probs=7.8
Q ss_pred eCceEEEeEEEec
Q 046411 154 ANNVIVSGLTSIN 166 (392)
Q Consensus 154 ~~nv~I~~v~i~~ 166 (392)
.+++.++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 3455666666655
No 129
>PLN02665 pectinesterase family protein
Probab=26.33 E-value=6.3e+02 Score=24.81 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=13.4
Q ss_pred EEEEeeCceEEEeEEEecC
Q 046411 149 ITINSANNVIVSGLTSINS 167 (392)
Q Consensus 149 i~~~~~~nv~I~~v~i~~~ 167 (392)
-....++++..+|++|+|.
T Consensus 148 Tv~v~a~~F~a~nitf~Nt 166 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNS 166 (366)
T ss_pred EEEEECCCeEEEeeEEEeC
Confidence 3345678888888888775
No 130
>PHA00672 hypothetical protein
Probab=23.38 E-value=1.4e+02 Score=24.41 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=18.3
Q ss_pred cEEEEcCceEEEEEE-EeeCCCCcceEEEEee
Q 046411 62 STIVVPKGRYLIKNA-VFRGPCKSRITVQISG 92 (392)
Q Consensus 62 ~~v~iP~G~Y~~~~l-~l~~~~ks~v~l~~~G 92 (392)
.++.||+|+-++|.+ ++ +++ |-+.|
T Consensus 50 Rei~IPkGt~LtG~~hkf-----~~~-ii~sG 75 (152)
T PHA00672 50 RTIRIPAGVALTGALIKV-----STV-LIFSG 75 (152)
T ss_pred EEEeccCceeeeeeeeEe-----eEE-EEecc
Confidence 579999999999885 33 556 55555
No 131
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=23.05 E-value=54 Score=27.15 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=15.0
Q ss_pred CchhhhHHHHHHHHHHHH
Q 046411 1 MAAAKLITISCVVSVFLI 18 (392)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (392)
|+.-||+..+|+|.|+++
T Consensus 1 MmtcRLLCalLvlaLcCC 18 (143)
T PF01456_consen 1 MMTCRLLCALLVLALCCC 18 (143)
T ss_pred CchHHHHHHHHHHHHHcC
Confidence 888899998888888754
No 132
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=22.82 E-value=2.3e+02 Score=22.94 Aligned_cols=54 Identities=22% Similarity=0.403 Sum_probs=31.3
Q ss_pred CCcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEEc-cEEe
Q 046411 60 QASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIG-GTLD 126 (392)
Q Consensus 60 ~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~id 126 (392)
.|..|+||+|...+=..... .=-.|.++|+|.+.++ .+ +.+. ++.|.|.| |.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~l~~l~I~G~L~f~~~-~~-------~~L~-a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----KLGSLIIGGTLIFDDD-RD-------ITLR-AEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----heeEEEEEEEEEEccC-CC-------CEEE-EEEEEECCCCeEE
Confidence 37889999998654322111 0123444899988765 11 1122 67888888 4544
No 133
>COG5510 Predicted small secreted protein [Function unknown]
Probab=22.29 E-value=99 Score=20.15 Aligned_cols=9 Identities=33% Similarity=-0.012 Sum_probs=3.4
Q ss_pred cHHHHHHHH
Q 046411 44 STQSFLRAW 52 (392)
Q Consensus 44 ~t~Aiq~Ai 52 (392)
|-+.--+||
T Consensus 31 DIq~~G~al 39 (44)
T COG5510 31 DIQSGGKAL 39 (44)
T ss_pred hHHHHHHHH
Confidence 333333444
No 134
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.16 E-value=1e+02 Score=20.58 Aligned_cols=11 Identities=9% Similarity=-0.127 Sum_probs=4.7
Q ss_pred ccHHHHHHHHH
Q 046411 43 DSTQSFLRAWA 53 (392)
Q Consensus 43 D~t~Aiq~Ai~ 53 (392)
.|-++-=+||.
T Consensus 30 ~Di~~~G~ai~ 40 (48)
T PRK10081 30 EDISDGGNAIS 40 (48)
T ss_pred HhHHHHHHHHH
Confidence 34444444443
No 135
>PRK09752 adhesin; Provisional
Probab=21.46 E-value=1.3e+03 Score=26.64 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=6.2
Q ss_pred ccEEEEceEEec
Q 046411 205 TGVTITGGTIQT 216 (392)
Q Consensus 205 ~nv~I~n~~i~~ 216 (392)
.++.|.||.|.+
T Consensus 180 g~vtIsnS~F~n 191 (1250)
T PRK09752 180 NDVYLSDVIFDN 191 (1250)
T ss_pred CcEEEEeeEEeC
Confidence 345555555543
No 136
>CHL00132 psaF photosystem I subunit III; Validated
Probab=21.29 E-value=1.2e+02 Score=26.26 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=7.2
Q ss_pred ccHHHHHHHHHH
Q 046411 43 DSTQSFLRAWAV 54 (392)
Q Consensus 43 D~t~Aiq~Ai~~ 54 (392)
.+.+|||+-.+.
T Consensus 33 ses~aF~kR~~~ 44 (185)
T CHL00132 33 SESPAFQKRLNN 44 (185)
T ss_pred ccCHHHHHHHHH
Confidence 455677766653
Done!