BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046414
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 59 VYIKNPTAKLTLLYSHGNAADLGHMYELFYELSAHLR-VNLMGYDYSGYGQSTGK-PSEQ 116
V++ N + TLL+ HG+ +L ++F EL +L N + D G+G+S G+ PS
Sbjct: 8 VHVGNKKSPNTLLFVHGSGCNL----KIFGELEKYLEDYNCILLDLKGHGESKGQCPSTV 63
Query: 117 NTYYDIEAVYRCLEEKYGVEEEDVILYGQSVGSGPTLDLAT-QLPRLRAVILHSPILSGI 175
Y D A + E ++++ L G S G L +A +LP +R V+ LSG
Sbjct: 64 YGYIDNVANFITNSE-VTKHQKNITLIGYSXGGAIVLGVALKKLPNVRKVV----SLSGG 118
Query: 176 RVMYPVKRTYWFDIYKN-IDKIPLVSC 201
+ + + IY N +D L+ C
Sbjct: 119 ARFDKLDKDFXEKIYHNQLDNNYLLEC 145
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 89 ELSAHLRVNLMGYDYSGYGQSTGKPSEQNTYYDIEAVYRCLEEKYGV----EEEDVILYG 144
+L+A L V + +DYSG+G S G + + R LEE V + E IL G
Sbjct: 60 DLAASLGVGAIRFDYSGHGASGGA-------FRDGTISRWLEEALAVLDHFKPEKAILVG 112
Query: 145 QSVGSGPTLDLATQL 159
S G L L +L
Sbjct: 113 SSXGGWIALRLIQEL 127
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 89/255 (34%), Gaps = 74/255 (29%)
Query: 66 AKLTLLYSHGNAADLGHMYELFYELSAHLRVNLMGYDYSGYGQSTGK-------PSEQNT 118
+++ +L SHG F +R G+ +GY +T + P+E
Sbjct: 48 SRIGVLVSHG-----------FTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAA 96
Query: 119 ------YYDIEAVYRCLEEKYGVEEEDVILYGQSVGSGPTLDLATQLPRLRAVIL----- 167
DI A R LEE+ V + + G S+G T+ A Q P A I+
Sbjct: 97 STASDWTADIVAAMRWLEERCDV----LFMTGLSMGGALTVWAAGQFPERFAGIMPINAA 152
Query: 168 ---HSPILSGI-----------------------RVMYPVKRTYWFDIYKNIDKI----- 196
SP L+ + + YPV I +
Sbjct: 153 LRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEMLL 212
Query: 197 PLVSCPVLVIHGTADDVVDWSHGKQLWE-LCKEKYEPLWIKGGNHCD---------LELY 246
P V CP L+I D VV +G+ ++ + + E LW++ H LE
Sbjct: 213 PRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYHVATLDNDKELILERS 272
Query: 247 PQYIKHLKKFISAIE 261
+I+ K +A+E
Sbjct: 273 LAFIRKHSKLAAALE 287
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 135 VEEEDVILYGQSVGSGPTLDLATQLPRLRAVILHSPILSGIRVMYPVKRTYWFDIYKN 192
V+E+ V + G S G G +L A PR+R V+ P LS KR + D+ KN
Sbjct: 197 VDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSD------YKRVWDLDLAKN 248
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 285 FRDTSTPI-IDQREKYRLSTDQGDKPRQSTDRREKSRTSIDGKEKSRTSIDRREKSRKSM 343
+R P+ DQ RL+ D D+ + + T K + +D R + S
Sbjct: 207 YRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTY----HKLQPGLDGR---KMSS 259
Query: 344 DHPDKSINGTDPPEKARNSI 363
PD +I TDPPE ARN +
Sbjct: 260 SRPDSTIFLTDPPEVARNKL 279
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 178 MYPVKRTYWFDIYKNIDK-IPLVSCPVLVIHGTADDVVDWSHGKQLWELCKEKYEPLWIK 236
M+P R W D + D+ I + L+IHG D VV S +L EL ++ +
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGR 249
Query: 237 GGNHCDLELYPQYIKHLKKFIS 258
G+ +E ++ + + +F +
Sbjct: 250 CGHWTQIEQTDRFNRLVVEFFN 271
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 65 TAKLTLLYSHGNAADLGHMYELFYELSAHLRVNLMGYDYSGYGQSTGKPSEQNTYYDIEA 124
T K + SHG G YE + L + + +D+ G+GQS G E+ D
Sbjct: 58 TPKALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVSDFHV 113
Query: 125 VYRCLEEKYGVEEED-----VILYGQSVGSGPTLDLATQLP-RLRAVILHSPIL 172
R + + ++D V L G S+G + A + P ++L SP++
Sbjct: 114 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLV 167
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 178 MYPVKRTYWFDIYKNIDK-IPLVSCPVLVIHGTADDVVDWSHGKQLWELCKEKYEPLWIK 236
M+P R W D + D+ I + L+IHG D VV S +L EL ++ +
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGR 249
Query: 237 GGNHCDLELYPQYIKHLKKFIS 258
G+ +E ++ + + +F +
Sbjct: 250 CGHWTQIEQTDRFNRLVVEFFN 271
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 65 TAKLTLLYSHGNAADLGHMYELFYELSAHLRVNLMGYDYSGYGQSTGKPSEQNTYYDIEA 124
T K + SHG G YE + L + + +D+ G+GQS G E+ D
Sbjct: 57 TPKALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVSDFHV 112
Query: 125 VYRCLEEKYGVEEED-----VILYGQSVGSGPTLDLATQLP-RLRAVILHSPIL 172
R + + ++D V L G S+G + A + P ++L SP++
Sbjct: 113 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLV 166
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 65 TAKLTLLYSHGNAADLGHMYELFYELSAHLRVNLMGYDYSGYGQSTGKPSEQNTYYDIEA 124
T K + SHG G YE + L + + +D+ G+GQS G E+ D
Sbjct: 40 TPKALIFVSHGAGEHSGR-YEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVSDFHV 95
Query: 125 VYRCLEEKYGVEEED-----VILYGQSVGSGPTLDLATQLP-RLRAVILHSPIL 172
R + + ++D V L G S+G + A + P ++L SP++
Sbjct: 96 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLV 149
>pdb|3EB7|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin Cry8ea1
From Bacillus Thuringiensis At 2.2 Angstroms Resolution
pdb|3EB7|B Chain B, Crystal Structure Of Insecticidal Delta-Endotoxin Cry8ea1
From Bacillus Thuringiensis At 2.2 Angstroms Resolution
pdb|3EB7|C Chain C, Crystal Structure Of Insecticidal Delta-Endotoxin Cry8ea1
From Bacillus Thuringiensis At 2.2 Angstroms Resolution
Length = 589
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 196 IPLVSCPVLVIHGTADDVVDWSHGKQLWELCKEKYEPL 233
+PLV P++ ++ T DV+ W GK WE+ E+ E L
Sbjct: 23 VPLVG-PIVSLYSTLIDVL-WPGGKSQWEIFMEQVEAL 58
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 79/225 (35%), Gaps = 65/225 (28%)
Query: 66 AKLTLLYSHGNAADLGHMYELFYELSAHLRVNLMGYDYSGYGQSTGK-------PSEQNT 118
+++ +L SHG F +R G+ +GY +T + P+E
Sbjct: 50 SRIGVLVSHG-----------FTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAA 98
Query: 119 ------YYDIEAVYRCLEEKYGVEEEDVILYGQSVGSGPTLDLATQLPRLRAVIL----- 167
DI A R LEE+ V + + G S+G T+ A Q P A I+
Sbjct: 99 STASDWTADIVAAMRWLEERCDV----LFMTGLSMGGALTVWAAGQFPERFAGIMPINAA 154
Query: 168 ---HSPILSGI-----------------------RVMYPVKRTYWFDIYKNIDKI----- 196
SP L+ + + YPV I +
Sbjct: 155 LRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEMLL 214
Query: 197 PLVSCPVLVIHGTADDVVDWSHGKQLWE-LCKEKYEPLWIKGGNH 240
P V CP L+I D VV +G+ ++ + + E LW++ H
Sbjct: 215 PRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYH 259
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 65 TAKLTLLYSHGNAADLGHMYELFYELSAHLRVNLMGYDYSGYGQSTGKPSEQNTYYDIEA 124
T K + SHG G EL L L + + +D+ G+GQS G E+ D
Sbjct: 57 TPKALIFVSHGAGEHSGRYEELARXLXG-LDLLVFAHDHVGHGQSEG---ERXVVSDFHV 112
Query: 125 VYRCLEEKYGVEEED-----VILYGQSVGSGPTLDLATQLP-RLRAVILHSPIL 172
R + + ++D V L G S G + A + P +L SP++
Sbjct: 113 FVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLV 166
>pdb|3GA7|A Chain A, 1.55 Angstrom Crystal Structure Of An Acetyl Esterase From
Salmonella Typhimurium
Length = 326
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 38 AARETVDVLRLDTKRGNQVVAVYIKNPTAKLTLLYSHGNAADLGHM---YELFYELSAHL 94
A T + T G+ +Y PT++ TL Y HG LG++ + L+ +
Sbjct: 58 APSXTTRTCAVPTPYGDVTTRLYSPQPTSQATLYYLHGGGFILGNLDTHDRIXRLLARYT 117
Query: 95 RVNLMGYDYS 104
++G DYS
Sbjct: 118 GCTVIGIDYS 127
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 196 IPLVSCPVLVIHGTADDVVDWSHGKQLWELCKEKYEPLWIKGGNHCDLELYPQYIKHLKK 255
+P V CP L++HG D +V H + + K L +G ++ L ++ K +
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAED 251
Query: 256 FI 257
F+
Sbjct: 252 FL 253
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 196 IPLVSCPVLVIHGTADDVVDWSHGKQLWELCKEKYEPLWIKGGNHCDLELYPQYIKHLKK 255
+P V CP L++HG D +V H + + K L +G ++ L ++ K +
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAED 251
Query: 256 FI 257
F+
Sbjct: 252 FL 253
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 196 IPLVSCPVLVIHGTADDVVDWSHGKQLWELCKEKYEPLWIKGGNHCDLELYPQYIKHLKK 255
+P V CP L++HG D +V H + + K L +G ++ L ++ K +
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAED 251
Query: 256 FI 257
F+
Sbjct: 252 FL 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,172,061
Number of Sequences: 62578
Number of extensions: 486328
Number of successful extensions: 973
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 28
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)