Query 046415
Match_columns 126
No_of_seqs 114 out of 654
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 11:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02519 Auxin_inducible: Auxi 100.0 3.8E-37 8.3E-42 219.9 9.4 97 1-104 1-98 (100)
2 PLN03090 auxin-responsive fami 100.0 4.4E-36 9.5E-41 216.6 9.6 91 4-105 12-103 (104)
3 PLN03219 uncharacterized prote 100.0 1.1E-32 2.3E-37 200.0 9.2 90 10-104 11-104 (108)
4 PLN03220 uncharacterized prote 100.0 9.5E-33 2.1E-37 199.4 8.8 66 40-105 32-103 (105)
5 PRK02899 adaptor protein; Prov 88.2 0.42 9E-06 37.7 2.6 25 67-91 38-62 (197)
6 PRK02315 adaptor protein; Prov 85.0 0.72 1.6E-05 37.1 2.4 25 67-91 38-62 (233)
7 PF05389 MecA: Negative regula 80.4 0.53 1.2E-05 37.0 0.0 25 67-91 38-62 (220)
8 smart00666 PB1 PB1 domain. Pho 78.9 4.1 9E-05 26.5 4.0 51 51-106 8-69 (81)
9 cd05992 PB1 The PB1 domain is 74.1 6.3 0.00014 25.4 3.8 51 51-105 7-68 (81)
10 PF02214 BTB_2: BTB/POZ domain 68.6 2.5 5.4E-05 28.3 0.9 53 55-107 7-62 (94)
11 cd06407 PB1_NLP A PB1 domain i 60.2 17 0.00038 24.8 3.9 48 49-100 5-64 (82)
12 PF02209 VHP: Villin headpiece 52.4 6.6 0.00014 23.4 0.7 19 64-82 1-19 (36)
13 PF00651 BTB: BTB/POZ domain; 51.3 41 0.00088 22.1 4.5 53 49-105 14-71 (111)
14 smart00153 VHP Villin headpiec 51.2 8.4 0.00018 22.9 1.0 19 64-82 1-19 (36)
15 cd06398 PB1_Joka2 The PB1 doma 49.4 30 0.00066 24.1 3.8 51 51-101 7-70 (91)
16 PF08948 DUF1859: Domain of un 48.5 9.1 0.0002 28.4 1.0 28 44-71 86-123 (126)
17 PF00564 PB1: PB1 domain; Int 45.6 24 0.00052 22.8 2.6 44 52-99 9-64 (84)
18 PF14317 YcxB: YcxB-like prote 45.0 28 0.00061 20.6 2.7 33 43-75 27-59 (62)
19 cd06397 PB1_UP1 Uncharacterize 43.7 52 0.0011 23.1 4.1 52 51-107 7-69 (82)
20 PF11834 DUF3354: Domain of un 43.4 18 0.00039 24.3 1.7 17 68-84 26-42 (69)
21 PF06849 DUF1246: Protein of u 37.3 2.6 5.7E-05 31.6 -3.4 23 40-62 67-92 (124)
22 PF04332 DUF475: Protein of un 37.1 23 0.0005 30.1 1.8 16 2-17 6-21 (294)
23 cd06401 PB1_TFG The PB1 domain 34.7 74 0.0016 22.2 3.8 50 49-102 5-68 (81)
24 COG1759 5-formaminoimidazole-4 34.7 20 0.00044 31.3 1.1 37 40-77 87-135 (361)
25 cd06396 PB1_NBR1 The PB1 domai 32.8 1.4E+02 0.0029 20.8 4.9 54 49-105 5-67 (81)
26 COG4862 MecA Negative regulato 31.6 35 0.00077 28.0 2.0 27 66-92 37-63 (224)
27 PF12058 DUF3539: Protein of u 31.2 9 0.00019 27.3 -1.3 13 63-75 4-16 (88)
28 cd06410 PB1_UP2 Uncharacterize 31.1 90 0.0019 22.0 3.8 49 49-102 17-79 (97)
29 COG2899 Uncharacterized protei 27.9 32 0.00068 29.7 1.2 16 2-17 56-71 (346)
30 PHA02102 hypothetical protein 27.5 41 0.0009 22.9 1.5 34 70-108 14-52 (72)
31 PRK13277 5-formaminoimidazole- 26.6 30 0.00065 30.2 0.9 22 40-61 87-111 (366)
32 TIGR03793 TOMM_pelo TOMM prope 26.6 1E+02 0.0022 21.0 3.3 27 65-91 14-44 (77)
33 KOG1290 Serine/threonine prote 25.6 39 0.00085 31.2 1.4 19 43-61 62-83 (590)
34 PF05194 UreE_C: UreE urease a 25.4 97 0.0021 20.9 3.1 28 45-77 24-51 (87)
35 cd06080 MUM1_like Mutated mela 25.4 93 0.002 21.4 3.0 40 44-83 28-75 (80)
36 PF02100 ODC_AZ: Ornithine dec 24.7 46 0.00099 23.9 1.4 48 54-102 23-74 (108)
37 PF04304 DUF454: Protein of un 24.2 52 0.0011 21.1 1.5 21 64-84 5-25 (71)
38 PF06344 Parecho_VpG: Parechov 24.1 34 0.00073 18.0 0.5 11 40-50 8-18 (20)
39 PRK01021 lpxB lipid-A-disaccha 22.6 59 0.0013 30.2 2.0 39 56-94 377-422 (608)
40 cd06404 PB1_aPKC PB1 domain is 22.4 1.7E+02 0.0037 20.5 3.8 38 50-91 6-43 (83)
41 cd01783 DAGK_delta_RA Ubiquiti 21.7 1.3E+02 0.0029 21.5 3.3 46 44-89 1-48 (97)
No 1
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=3.8e-37 Score=219.92 Aligned_cols=97 Identities=36% Similarity=0.611 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHhhhhcccccccccccccccCCCCCccCCCCceEEEeec-CeeeeeccCCcccHHHHHHHHhhhh
Q 046415 1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMD-NRRLVIPVPYLYSDIFRELLRMSEE 79 (126)
Q Consensus 1 m~~~~kL~~~~kkWq~~a~~~rkr~s~~~~~~~~~~~~~~~~vpkG~~~VYVGe-~~RfvVpv~yL~hP~F~~LL~~aee 79 (126)
||+.+|+.++++||++.++..+++.+..++. ...++|+||||||||+ ++||+||++|||||+|++||++|||
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~-------~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aee 73 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSS-------SESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEE 73 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhccccccccccc-------ccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhh
Confidence 9999999999999999887766554422221 1357899999999997 8999999999999999999999999
Q ss_pred hcCCCCCCcEEecCcHHHHHHHHhh
Q 046415 80 EFGLPKDGLIMFPCDSFFLEYVVST 104 (126)
Q Consensus 80 EfG~~~~G~L~IPC~~~~Fe~vl~~ 104 (126)
||||+++|+|+||||+++|+++|..
T Consensus 74 EfG~~~~G~l~iPC~~~~Fe~~l~~ 98 (100)
T PF02519_consen 74 EFGFDQDGPLTIPCDVVLFEHLLWL 98 (100)
T ss_pred hcCcCCCCcEEeeCCHHHHHHHHHH
Confidence 9999999999999999999999864
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=216.62 Aligned_cols=91 Identities=23% Similarity=0.412 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccCCCCCccCCCCceEEEeec-CeeeeeccCCcccHHHHHHHHhhhhhcC
Q 046415 4 AKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMD-NRRLVIPVPYLYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 4 ~~kL~~~~kkWq~~a~~~rkr~s~~~~~~~~~~~~~~~~vpkG~~~VYVGe-~~RfvVpv~yL~hP~F~~LL~~aeeEfG 82 (126)
+++|++|.|||+++++.+.. +.+..+.++|+||||||||+ ++||+||++|||||+|++||++||||||
T Consensus 12 ~~~~kq~l~r~~s~~~~~~~-----------~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG 80 (104)
T PLN03090 12 TAMLKQILKRCSSLGKKQGY-----------DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFG 80 (104)
T ss_pred HHHHHHHHHHHHHhcccCCc-----------ccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhC
Confidence 57899999999887553211 11134678999999999997 6899999999999999999999999999
Q ss_pred CCCCCcEEecCcHHHHHHHHhhc
Q 046415 83 LPKDGLIMFPCDSFFLEYVVSTS 105 (126)
Q Consensus 83 ~~~~G~L~IPC~~~~Fe~vl~~~ 105 (126)
|+++|+|+||||+++|++++...
T Consensus 81 f~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 81 FDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCCcEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999764
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=99.98 E-value=1.1e-32 Score=199.96 Aligned_cols=90 Identities=24% Similarity=0.430 Sum_probs=73.5
Q ss_pred HHHHHHHhhhhcccccccccccccccCCCCCccCCCCceEEEeec---CeeeeeccCCcccHHHHHHHHhhhhhcCCCC-
Q 046415 10 MATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMD---NRRLVIPVPYLYSDIFRELLRMSEEEFGLPK- 85 (126)
Q Consensus 10 ~~kkWq~~a~~~rkr~s~~~~~~~~~~~~~~~~vpkG~~~VYVGe---~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~- 85 (126)
..+-||.++..+++..+.+.. +++.+.++||||||||||+ ++||+||++|||||+|++||++|||||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~ 85 (108)
T PLN03219 11 AKQIFKSQSMRNKNGSSSPSS-----STTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHS 85 (108)
T ss_pred HHHHHHHHHHhcccCCCCCcc-----CCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCC
Confidence 335687666656554332221 1234678999999999996 7999999999999999999999999999997
Q ss_pred CCcEEecCcHHHHHHHHhh
Q 046415 86 DGLIMFPCDSFFLEYVVST 104 (126)
Q Consensus 86 ~G~L~IPC~~~~Fe~vl~~ 104 (126)
+|+|+|||+++.|+++|++
T Consensus 86 ~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 86 MGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCEEEeCCHHHHHHHHHh
Confidence 6999999999999999975
No 4
>PLN03220 uncharacterized protein; Provisional
Probab=99.98 E-value=9.5e-33 Score=199.39 Aligned_cols=66 Identities=26% Similarity=0.529 Sum_probs=62.4
Q ss_pred CccCCCCceEEEeec-----CeeeeeccCCcccHHHHHHHHhhhhhcCCCC-CCcEEecCcHHHHHHHHhhc
Q 046415 40 PAVADKDHFVACAMD-----NRRLVIPVPYLYSDIFRELLRMSEEEFGLPK-DGLIMFPCDSFFLEYVVSTS 105 (126)
Q Consensus 40 ~~~vpkG~~~VYVGe-----~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~~~ 105 (126)
+.+|||||||||||+ ++||+||++|||||+|++||++|||||||++ +|+|+||||++.|++++++.
T Consensus 32 ~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s~ 103 (105)
T PLN03220 32 SDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASR 103 (105)
T ss_pred cCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHhh
Confidence 568999999999996 6999999999999999999999999999998 69999999999999999864
No 5
>PRK02899 adaptor protein; Provisional
Probab=88.23 E-value=0.42 Score=37.73 Aligned_cols=25 Identities=28% Similarity=0.692 Sum_probs=22.1
Q ss_pred cHHHHHHHHhhhhhcCCCCCCcEEe
Q 046415 67 SDIFRELLRMSEEEFGLPKDGLIMF 91 (126)
Q Consensus 67 hP~F~~LL~~aeeEfG~~~~G~L~I 91 (126)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 38 HQLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHHhhhccCcccCCeEEE
Confidence 4578888999999999999999875
No 6
>PRK02315 adaptor protein; Provisional
Probab=84.98 E-value=0.72 Score=37.13 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=22.8
Q ss_pred cHHHHHHHHhhhhhcCCCCCCcEEe
Q 046415 67 SDIFRELLRMSEEEFGLPKDGLIMF 91 (126)
Q Consensus 67 hP~F~~LL~~aeeEfG~~~~G~L~I 91 (126)
+-+|.++|++|..|+||..+|||+|
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 4689999999999999999999975
No 7
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=80.36 E-value=0.53 Score=37.00 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhhhhcCCCCCCcEEe
Q 046415 67 SDIFRELLRMSEEEFGLPKDGLIMF 91 (126)
Q Consensus 67 hP~F~~LL~~aeeEfG~~~~G~L~I 91 (126)
+-+|.++|++|.+|+||..+|+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 5789999999999999999999875
No 8
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=78.94 E-value=4.1 Score=26.50 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=37.0
Q ss_pred EeecCeeeeeccCCcccHHHHHHHHhhhhhcCCC----------CCC-cEEecCcHHHHHHHHhhcC
Q 046415 51 CAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLP----------KDG-LIMFPCDSFFLEYVVSTSC 106 (126)
Q Consensus 51 YVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~vl~~~~ 106 (126)
|.|+.+||.||- ...|.+|..+..+.|++. .+| .++|.++. .++.+++...
T Consensus 8 ~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~ 69 (81)
T smart00666 8 YGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYD 69 (81)
T ss_pred ECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHH
Confidence 445789999985 778999999999988863 244 67788865 4555565443
No 9
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=74.10 E-value=6.3 Score=25.41 Aligned_cols=51 Identities=31% Similarity=0.410 Sum_probs=37.0
Q ss_pred EeecCeeeeeccCCcccHHHHHHHHhhhhhcCCC----------CCC-cEEecCcHHHHHHHHhhc
Q 046415 51 CAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLP----------KDG-LIMFPCDSFFLEYVVSTS 105 (126)
Q Consensus 51 YVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~vl~~~ 105 (126)
|-|+.+||.+|. .++.|.+|..+..+.|++. .+| .++|.++ ..|+.+++..
T Consensus 7 ~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~ 68 (81)
T cd05992 7 YGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEA 68 (81)
T ss_pred ecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHH
Confidence 446789999997 7889999999999888874 233 4556665 4566666544
No 10
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=68.61 E-value=2.5 Score=28.33 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=36.6
Q ss_pred CeeeeeccCCcc-c--HHHHHHHHhhhhhcCCCCCCcEEecCcHHHHHHHHhhcCC
Q 046415 55 NRRLVIPVPYLY-S--DIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCR 107 (126)
Q Consensus 55 ~~RfvVpv~yL~-h--P~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~~~c 107 (126)
+++|.++.+.|. + ..|..|+........-..+|.+-|-++...|++||.=.+.
T Consensus 7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhh
Confidence 467777777666 3 3777787765222222457999999999999999966554
No 11
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=60.22 E-value=17 Score=24.81 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=33.9
Q ss_pred EEEeecCeeeeeccCCcccHHHHHHHHhhhhhcCCCC------------CCcEEecCcHHHHHH
Q 046415 49 VACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPK------------DGLIMFPCDSFFLEY 100 (126)
Q Consensus 49 ~VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~------------~G~L~IPC~~~~Fe~ 100 (126)
+.|-||..||-+|.. .-|++|.++-.+-|++.. ...++|.|+.++=|-
T Consensus 5 ~~~~~d~~r~~l~~~----~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~ea 64 (82)
T cd06407 5 ATYGEEKIRFRLPPS----WGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEEC 64 (82)
T ss_pred EEeCCeEEEEEcCCC----CCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHH
Confidence 456678899999863 358888888888776532 235778899876554
No 12
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=52.39 E-value=6.6 Score=23.40 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=15.4
Q ss_pred CcccHHHHHHHHhhhhhcC
Q 046415 64 YLYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 64 yL~hP~F~~LL~~aeeEfG 82 (126)
||+...|++++.|+.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 13
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=51.31 E-value=41 Score=22.11 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=36.6
Q ss_pred EEEeecCeeeeeccCCc--ccHHHHHHHHhhhhhcCCCCCC--cEEec-CcHHHHHHHHhhc
Q 046415 49 VACAMDNRRLVIPVPYL--YSDIFRELLRMSEEEFGLPKDG--LIMFP-CDSFFLEYVVSTS 105 (126)
Q Consensus 49 ~VYVGe~~RfvVpv~yL--~hP~F~~LL~~aeeEfG~~~~G--~L~IP-C~~~~Fe~vl~~~ 105 (126)
.+.||+.++|-+.-..| ..|.|+.+++.. +....+ .|.++ ++...|+.++.-.
T Consensus 14 ~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 14 TIRVGDGKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEETTTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEECCCEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccc
Confidence 44566678888887777 569999999987 222333 45555 7789999988544
No 14
>smart00153 VHP Villin headpiece domain.
Probab=51.22 E-value=8.4 Score=22.86 Aligned_cols=19 Identities=42% Similarity=0.693 Sum_probs=17.3
Q ss_pred CcccHHHHHHHHhhhhhcC
Q 046415 64 YLYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 64 yL~hP~F~~LL~~aeeEfG 82 (126)
||+.-.|++++.|+.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7899999999999999983
No 15
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=49.39 E-value=30 Score=24.12 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=34.8
Q ss_pred EeecCeeeeeccCC-cccHHHHHHHHhhhhhcCCCC-----------CC-cEEecCcHHHHHHH
Q 046415 51 CAMDNRRLVIPVPY-LYSDIFRELLRMSEEEFGLPK-----------DG-LIMFPCDSFFLEYV 101 (126)
Q Consensus 51 YVGe~~RfvVpv~y-L~hP~F~~LL~~aeeEfG~~~-----------~G-~L~IPC~~~~Fe~v 101 (126)
|-|+-+||-+|..= -.+.-|..|.++-++-|.... +| -++|.||.++-+-+
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~ 70 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAI 70 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHH
Confidence 44678999999630 014578888888888776542 34 47799998766553
No 16
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=48.54 E-value=9.1 Score=28.44 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=8.8
Q ss_pred CCCceEEEeecCeeee----------eccCCcccHHHH
Q 046415 44 DKDHFVACAMDNRRLV----------IPVPYLYSDIFR 71 (126)
Q Consensus 44 pkG~~~VYVGe~~Rfv----------Vpv~yL~hP~F~ 71 (126)
..||||+.|-.+-+|+ ||+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPGRAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE--SSSSEEEEEEEESS----S--------
T ss_pred CcccceeeccchhhhhhhhccCCCcceeeEEEeceeee
Confidence 5799999997666665 788999988754
No 17
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=45.61 E-value=24 Score=22.76 Aligned_cols=44 Identities=34% Similarity=0.513 Sum_probs=30.3
Q ss_pred eecCee-eeeccCCcccHHHHHHHHhhhhhcCCC----------CCC-cEEecCcHHHHH
Q 046415 52 AMDNRR-LVIPVPYLYSDIFRELLRMSEEEFGLP----------KDG-LIMFPCDSFFLE 99 (126)
Q Consensus 52 VGe~~R-fvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe 99 (126)
.|+.+| +.+| ..+.|.+|..+.++.||.. .+| .++|.++.++=+
T Consensus 9 ~~~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~ 64 (84)
T PF00564_consen 9 GGDIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQE 64 (84)
T ss_dssp TTEEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHH
T ss_pred CCeeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHH
Confidence 345555 5554 4579999999999999983 344 577877765433
No 18
>PF14317 YcxB: YcxB-like protein
Probab=44.96 E-value=28 Score=20.63 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCCceEEEeecCeeeeeccCCcccHHHHHHHH
Q 046415 43 ADKDHFVACAMDNRRLVIPVPYLYSDIFRELLR 75 (126)
Q Consensus 43 vpkG~~~VYVGe~~RfvVpv~yL~hP~F~~LL~ 75 (126)
.-+.++.+|+++..-++||-+.++.-...++.+
T Consensus 27 e~~~~~~l~~~~~~~~~iPk~~f~~~e~~~f~~ 59 (62)
T PF14317_consen 27 ETKDYFYLYLGKNQAFIIPKRAFSEEEKEEFRE 59 (62)
T ss_pred EeCCEEEEEECCCeEEEEEHHHCCHhHHHHHHH
Confidence 357888899999999999999998655555544
No 19
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=43.74 E-value=52 Score=23.14 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=37.2
Q ss_pred EeecCeeeeeccCCcccHHHHHHHHhhhhhcCCC----------CC-CcEEecCcHHHHHHHHhhcCC
Q 046415 51 CAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLP----------KD-GLIMFPCDSFFLEYVVSTSCR 107 (126)
Q Consensus 51 YVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~-G~L~IPC~~~~Fe~vl~~~~c 107 (126)
|-|+.|||.+|. .|.+.+|-++-+.-|-+. .| ..|||.=+.++.+. ..-.-|
T Consensus 7 ~~g~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~-~~~~~~ 69 (82)
T cd06397 7 FLGDTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF-YRLSHR 69 (82)
T ss_pred eCCceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH-HHhccc
Confidence 457789999998 899999999888777654 34 46888776666554 434433
No 20
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=43.39 E-value=18 Score=24.30 Aligned_cols=17 Identities=41% Similarity=0.866 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhcCCC
Q 046415 68 DIFRELLRMSEEEFGLP 84 (126)
Q Consensus 68 P~F~~LL~~aeeEfG~~ 84 (126)
-.++|||+.|++.||+.
T Consensus 26 ~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS 42 (69)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 47999999999999985
No 21
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=37.28 E-value=2.6 Score=31.63 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=13.3
Q ss_pred CccCCCCceEEEee-c--Ceeeeecc
Q 046415 40 PAVADKDHFVACAM-D--NRRLVIPV 62 (126)
Q Consensus 40 ~~~vpkG~~~VYVG-e--~~RfvVpv 62 (126)
..-||.|-|++|+| | .++|.||+
T Consensus 67 ~I~VPhgSfv~Y~G~d~ie~~~~vP~ 92 (124)
T PF06849_consen 67 AIFVPHGSFVAYVGYDRIENEFKVPI 92 (124)
T ss_dssp EEE--BTTHHHHH-HHHHHHT-SS-E
T ss_pred eEEecCCCeeEeecHHHHhhcCCCCe
Confidence 45689999999999 4 24477774
No 22
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=37.07 E-value=23 Score=30.14 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHh
Q 046415 2 LSAKKLMKMATKWQRQ 17 (126)
Q Consensus 2 ~~~~kL~~~~kkWq~~ 17 (126)
+|++.|+.|..+||++
T Consensus 6 VNA~vLk~Ms~~Wq~~ 21 (294)
T PF04332_consen 6 VNATVLKRMSPFWQRR 21 (294)
T ss_pred hhHHHHHhhhHHHHHH
Confidence 6899999999999984
No 23
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=34.72 E-value=74 Score=22.21 Aligned_cols=50 Identities=28% Similarity=0.264 Sum_probs=30.8
Q ss_pred EEEeecCeeeeeccCCcccHHHHHHHHhhhhhcCC-------------CCCCc-EEecCcHHHHHHHH
Q 046415 49 VACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGL-------------PKDGL-IMFPCDSFFLEYVV 102 (126)
Q Consensus 49 ~VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~-------------~~~G~-L~IPC~~~~Fe~vl 102 (126)
+||-||-||+-+|.. .-.|.+|.++....|.. +.+|- +||.++. .++-++
T Consensus 5 ~~~g~DiR~~~~~~~---~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~-dL~~A~ 68 (81)
T cd06401 5 AQLGDDIRRIPIHNE---DITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSS-DLSFAI 68 (81)
T ss_pred EEeCCeEEEEeccCc---cccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHH-HHHHHH
Confidence 466677788777642 22678888888766652 24554 6788864 344333
No 24
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=34.69 E-value=20 Score=31.26 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=24.6
Q ss_pred CccCCCCceEEEee-c--Ceeeeecc---------CCcccHHHHHHHHhh
Q 046415 40 PAVADKDHFVACAM-D--NRRLVIPV---------PYLYSDIFRELLRMS 77 (126)
Q Consensus 40 ~~~vpkG~~~VYVG-e--~~RfvVpv---------~yL~hP~F~~LL~~a 77 (126)
..-+|.|-|++||| | .+.|.||+ +- ..-.-..||++|
T Consensus 87 ~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~-~~~~~~~lLekA 135 (361)
T COG1759 87 AIFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEE-DRKLEYKLLEKA 135 (361)
T ss_pred eEEecCCceEEEecchhhhhcccCcccccHhHhhhhc-chhhHHHHHHHc
Confidence 45689999999999 4 36677774 11 222345677777
No 25
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=32.85 E-value=1.4e+02 Score=20.75 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=37.7
Q ss_pred EEEeecCeeeeeccCCcccHHHHHHHHhhhhhcCCC--------C-CCcEEecCcHHHHHHHHhhc
Q 046415 49 VACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLP--------K-DGLIMFPCDSFFLEYVVSTS 105 (126)
Q Consensus 49 ~VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~--------~-~G~L~IPC~~~~Fe~vl~~~ 105 (126)
|-|-||..||.++- -.++.|.+|..+-+.-|+++ . ..+++|.|++++=| .+...
T Consensus 5 aty~~d~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE-~~rl~ 67 (81)
T cd06396 5 VTYNGESQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEE-ALKSA 67 (81)
T ss_pred EEECCeEEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHH-HHHHH
Confidence 44667889999974 12457899999998888853 2 34789999876544 34333
No 26
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=31.60 E-value=35 Score=28.02 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=24.3
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCcEEec
Q 046415 66 YSDIFRELLRMSEEEFGLPKDGLIMFP 92 (126)
Q Consensus 66 ~hP~F~~LL~~aeeEfG~~~~G~L~IP 92 (126)
.+-+|-++++.+.+|-+|...|||.|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccCCceEEE
Confidence 478999999999999999999999874
No 27
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=31.20 E-value=9 Score=27.28 Aligned_cols=13 Identities=38% Similarity=0.536 Sum_probs=9.4
Q ss_pred CCcccHHHHHHHH
Q 046415 63 PYLYSDIFRELLR 75 (126)
Q Consensus 63 ~yL~hP~F~~LL~ 75 (126)
.|||||.|.-|-.
T Consensus 4 ~YLNHPtFGlLy~ 16 (88)
T PF12058_consen 4 TYLNHPTFGLLYR 16 (88)
T ss_dssp -EEEETTTEEEEE
T ss_pred ccccCCccchhee
Confidence 5899999976643
No 28
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=31.06 E-value=90 Score=22.03 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=32.4
Q ss_pred EEEee-cCeeeeeccCCcccHHHHHHHHhhhhhcCCCC-------------CCcEEecCcHHHHHHHH
Q 046415 49 VACAM-DNRRLVIPVPYLYSDIFRELLRMSEEEFGLPK-------------DGLIMFPCDSFFLEYVV 102 (126)
Q Consensus 49 ~VYVG-e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~-------------~G~L~IPC~~~~Fe~vl 102 (126)
.=||| +.+-..|+-. -.|.+|..+..+.++... ++-+.|.||.++ .+++
T Consensus 17 l~Y~GG~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl-~~M~ 79 (97)
T cd06410 17 LRYVGGETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDL-KNMM 79 (97)
T ss_pred EEEcCCceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHH-HHHH
Confidence 46887 5677777765 367778888777776554 445678888743 3444
No 29
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.94 E-value=32 Score=29.73 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHh
Q 046415 2 LSAKKLMKMATKWQRQ 17 (126)
Q Consensus 2 ~~~~kL~~~~kkWq~~ 17 (126)
+|+.+|+.|..+||++
T Consensus 56 vNA~iLk~MS~~Wqk~ 71 (346)
T COG2899 56 VNAAILKDMSPFWQKR 71 (346)
T ss_pred hhHHHHHhccHHHHHH
Confidence 6889999999999985
No 30
>PHA02102 hypothetical protein
Probab=27.47 E-value=41 Score=22.90 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=22.3
Q ss_pred HHHHHHhh-----hhhcCCCCCCcEEecCcHHHHHHHHhhcCCC
Q 046415 70 FRELLRMS-----EEEFGLPKDGLIMFPCDSFFLEYVVSTSCRS 108 (126)
Q Consensus 70 F~~LL~~a-----eeEfG~~~~G~L~IPC~~~~Fe~vl~~~~c~ 108 (126)
+|.||.+. |..||.+.++- ..+.|+.+|+++|-+
T Consensus 14 LqkLl~eV~dlAse~~yGvein~~-----nev~f~DWLsSSCYG 52 (72)
T PHA02102 14 LQKLLKEVKDLASEQDYGVEINDD-----NEVRFEDWLSSSCYG 52 (72)
T ss_pred HHHHHHHHHHHhhhhccceeeCCC-----CcEeHHHhhcccccc
Confidence 45666543 45677665442 467899999988854
No 31
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=26.59 E-value=30 Score=30.16 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=17.8
Q ss_pred CccCCCCceEEEee-cC--eeeeec
Q 046415 40 PAVADKDHFVACAM-DN--RRLVIP 61 (126)
Q Consensus 40 ~~~vpkG~~~VYVG-e~--~RfvVp 61 (126)
..-||.|-|++||| |. ..|.||
T Consensus 87 ~i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 87 AIFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred eEEecCCCeEEEecHHHHhhcCCCC
Confidence 45689999999999 42 478888
No 32
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=26.57 E-value=1e+02 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=18.3
Q ss_pred cccHHHHHHH----HhhhhhcCCCCCCcEEe
Q 046415 65 LYSDIFRELL----RMSEEEFGLPKDGLIMF 91 (126)
Q Consensus 65 L~hP~F~~LL----~~aeeEfG~~~~G~L~I 91 (126)
-..|-|++.| +.+=+||||.....+.|
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i 44 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVPAEVEV 44 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCCCceEE
Confidence 3579999966 44557889986554443
No 33
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.56 E-value=39 Score=31.22 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=15.7
Q ss_pred CCCCceEEEeec---Ceeeeec
Q 046415 43 ADKDHFVACAMD---NRRLVIP 61 (126)
Q Consensus 43 vpkG~~~VYVGe---~~RfvVp 61 (126)
.+-||.||++|| ..||+|-
T Consensus 62 ~kGGYHpV~IGD~F~~gRY~v~ 83 (590)
T KOG1290|consen 62 RKGGYHPVRIGDVFNGGRYHVQ 83 (590)
T ss_pred hcCCCceeeccccccCceEEEE
Confidence 477999999998 3888873
No 34
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=25.45 E-value=97 Score=20.88 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=18.0
Q ss_pred CCceEEEeecCeeeeeccCCcccHHHHHHHHhh
Q 046415 45 KDHFVACAMDNRRLVIPVPYLYSDIFRELLRMS 77 (126)
Q Consensus 45 kG~~~VYVGe~~RfvVpv~yL~hP~F~~LL~~a 77 (126)
.=|+|+++++. ++.|| ..+...+||++.
T Consensus 24 NrH~p~~i~~~-~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 24 NRHWPLFIEED-ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp HTT--EEEETT-EEEEE------HHHHHHHHHT
T ss_pred CCccceEEcCC-EEEec----CcHHHHHHHHHC
Confidence 45889999877 77777 567778888774
No 35
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=25.39 E-value=93 Score=21.37 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=32.2
Q ss_pred CCCceEEEeecC-----eeeeeccCCcccHHH---HHHHHhhhhhcCC
Q 046415 44 DKDHFVACAMDN-----RRLVIPVPYLYSDIF---RELLRMSEEEFGL 83 (126)
Q Consensus 44 pkG~~~VYVGe~-----~RfvVpv~yL~hP~F---~~LL~~aeeEfG~ 83 (126)
++-+.+.+.|+. .++-+...|+.|+.+ +.|++++.|.|.-
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~~ 75 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYEQ 75 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 455667778863 788888999999999 4899999998863
No 36
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=24.67 E-value=46 Score=23.86 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=24.1
Q ss_pred cCeeee-eccCCc---ccHHHHHHHHhhhhhcCCCCCCcEEecCcHHHHHHHH
Q 046415 54 DNRRLV-IPVPYL---YSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102 (126)
Q Consensus 54 e~~Rfv-Vpv~yL---~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl 102 (126)
++.=|+ +|-..+ .-..|.+||+.|||++|.++ -.|.++=+......++
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~-vvic~~k~~~d~~~Ll 74 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH-VVICLDKNRPDRASLL 74 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHH
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE-EEEEEECCchhHHHhh
Confidence 344455 454333 45679999999999998654 4566665544455555
No 37
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=24.19 E-value=52 Score=21.13 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=17.8
Q ss_pred CcccHHHHHHHHhhhhhcCCC
Q 046415 64 YLYSDIFRELLRMSEEEFGLP 84 (126)
Q Consensus 64 yL~hP~F~~LL~~aeeEfG~~ 84 (126)
.+|||.|+..++.-+|.-|..
T Consensus 5 l~~h~~~g~~I~~w~~~r~i~ 25 (71)
T PF04304_consen 5 LLNHRLFGPYIRNWEEHRGIP 25 (71)
T ss_pred HHcCchhHHHHHHHHHCCCcC
Confidence 589999999999988876654
No 38
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=24.11 E-value=34 Score=18.01 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=8.8
Q ss_pred CccCCCCceEE
Q 046415 40 PAVADKDHFVA 50 (126)
Q Consensus 40 ~~~vpkG~~~V 50 (126)
+..-|||.|||
T Consensus 8 p~~kpkgtfpv 18 (20)
T PF06344_consen 8 PVAKPKGTFPV 18 (20)
T ss_pred cccccCCcccc
Confidence 55679999997
No 39
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.55 E-value=59 Score=30.24 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=26.4
Q ss_pred eeeeeccCCcccHHHHHHH-----HhhhhhcCCCCCCcEE--ecCc
Q 046415 56 RRLVIPVPYLYSDIFRELL-----RMSEEEFGLPKDGLIM--FPCD 94 (126)
Q Consensus 56 ~RfvVpv~yL~hP~F~~LL-----~~aeeEfG~~~~G~L~--IPC~ 94 (126)
++.=+|+.|.+||++.++= +.+.+++|.+.++++. +|=+
T Consensus 377 ~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGS 422 (608)
T PRK01021 377 KDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGS 422 (608)
T ss_pred HhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCC
Confidence 4456999999999999853 2345678886555532 5543
No 40
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.38 E-value=1.7e+02 Score=20.52 Aligned_cols=38 Identities=18% Similarity=0.023 Sum_probs=28.4
Q ss_pred EEeecCeeeeeccCCcccHHHHHHHHhhhhhcCCCCCCcEEe
Q 046415 50 ACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMF 91 (126)
Q Consensus 50 VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~G~L~I 91 (126)
-|-|+-.++-++. ...|.+|.++-++-|.|..++++++
T Consensus 6 ~y~gdi~it~~d~----~~s~e~L~~~v~~~c~~~~~q~ft~ 43 (83)
T cd06404 6 AYNGDIMITSIDP----SISLEELCNEVRDMCRFHNDQPFTL 43 (83)
T ss_pred EecCcEEEEEcCC----CcCHHHHHHHHHHHhCCCCCCcEEE
Confidence 3556655555554 4559999999999999988777776
No 41
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=21.72 E-value=1.3e+02 Score=21.54 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=32.5
Q ss_pred CCCceEEEeecC--eeeeeccCCcccHHHHHHHHhhhhhcCCCCCCcE
Q 046415 44 DKDHFVACAMDN--RRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLI 89 (126)
Q Consensus 44 pkG~~~VYVGe~--~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~G~L 89 (126)
.+|++=||.|.- .---+.+..-+.-.-++++.+|-+.||.++..+-
T Consensus 1 d~g~iKVY~G~L~~~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~ 48 (97)
T cd01783 1 DKEVVKVYPGWLRVGVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPE 48 (97)
T ss_pred CCceEEEecCccccCcceEEEEecccchHHHHHHHHHHHhCcccCCcc
Confidence 378999999962 2222244445666789999999999999875543
Done!