Query 046415
Match_columns 126
No_of_seqs 114 out of 654
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 62.7 2.3 7.8E-05 24.7 0.7 19 63-81 1-19 (37)
2 1w8x_N Protein P31, protein C, 51.9 6.1 0.00021 28.3 1.6 28 44-71 86-123 (126)
3 1vd2_A Protein kinase C, IOTA 51.1 14 0.00047 25.0 3.2 34 53-90 15-48 (89)
4 2vkp_A BTB/POZ domain-containi 49.3 25 0.00086 22.4 4.2 51 49-103 12-68 (109)
5 3qli_A Coenzyme A transferase; 47.5 9.4 0.00032 32.6 2.4 43 40-83 401-454 (455)
6 1yu8_X Villin; alpha helix, 3- 37.6 9.3 0.00032 24.7 0.6 20 63-82 31-50 (67)
7 2al3_A TUG long isoform; TUG U 35.5 28 0.00096 23.6 2.8 40 48-89 12-52 (90)
8 1qzp_A Dematin; villin headpie 34.4 8.2 0.00028 25.0 -0.1 19 63-81 32-50 (68)
9 1ujs_A Actin-binding LIM prote 34.1 11 0.00039 25.6 0.7 20 63-82 46-65 (88)
10 2xko_C PIPX, global nitrogen r 33.0 5.4 0.00018 27.5 -1.2 13 63-75 5-17 (89)
11 3eh7_A 4-hydroxybutyrate COA-t 32.9 21 0.00071 30.0 2.2 41 41-82 382-434 (434)
12 3drz_A BTB/POZ domain-containi 32.2 79 0.0027 20.9 4.7 58 46-105 6-68 (107)
13 2k6m_S Supervillin; SVHP, HP, 31.8 10 0.00035 24.5 0.1 20 63-82 31-50 (67)
14 1z3x_A Putative cytidyltransfe 30.6 4.8 0.00016 32.0 -2.0 30 40-70 207-236 (238)
15 2vpk_A Myoneurin; transcriptio 30.2 77 0.0026 20.4 4.3 42 55-103 31-77 (116)
16 1r29_A B-cell lymphoma 6 prote 27.4 81 0.0028 20.6 4.1 45 55-103 38-86 (127)
17 1wy3_A Villin; structural prot 25.7 20 0.00069 20.3 0.6 17 65-81 1-17 (35)
18 1y6i_A Mg-chelatase cofactor G 25.6 10 0.00034 30.0 -1.0 30 40-71 199-229 (233)
19 1y74_B MLIN-2/CASK, peripheral 23.8 28 0.00097 20.4 1.1 20 63-82 26-49 (50)
20 1zav_U 50S ribosomal protein L 23.5 44 0.0015 18.2 1.7 13 70-82 18-30 (30)
21 1o51_A Hypothetical protein TM 23.2 57 0.002 22.5 2.7 27 48-80 16-42 (114)
22 3ga1_A Nucleus accumbens-assoc 23.0 1.4E+02 0.0047 19.6 4.6 43 54-103 41-87 (129)
23 3n5b_B ASR0485 protein; PII, P 22.5 11 0.00037 26.9 -1.2 30 40-76 12-41 (112)
24 2i46_A Adrenocortical dysplasi 21.0 70 0.0024 23.8 2.9 51 42-95 47-100 (161)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=62.74 E-value=2.3 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=17.3
Q ss_pred CCcccHHHHHHHHhhhhhc
Q 046415 63 PYLYSDIFRELLRMSEEEF 81 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEf 81 (126)
.||+.-.|++++.|+.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 2
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=51.89 E-value=6.1 Score=28.34 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=19.0
Q ss_pred CCCceEEEeecCeeee----------eccCCcccHHHH
Q 046415 44 DKDHFVACAMDNRRLV----------IPVPYLYSDIFR 71 (126)
Q Consensus 44 pkG~~~VYVGe~~Rfv----------Vpv~yL~hP~F~ 71 (126)
..||||+.|-.+-+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 5799999997666665 799999998754
No 3
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=51.11 E-value=14 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=26.6
Q ss_pred ecCeeeeeccCCcccHHHHHHHHhhhhhcCCCCCCcEE
Q 046415 53 MDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIM 90 (126)
Q Consensus 53 Ge~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~~G~L~ 90 (126)
||-.|+-||. ...|++|.++-.+-|++..+.+++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~ 48 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFT 48 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEE
Confidence 6778999987 468999999999999986444443
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=49.29 E-value=25 Score=22.37 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=35.0
Q ss_pred EEEeec---CeeeeeccCCc--ccHHHHHHHHhhhhhcCCCCCCcEEec-CcHHHHHHHHh
Q 046415 49 VACAMD---NRRLVIPVPYL--YSDIFRELLRMSEEEFGLPKDGLIMFP-CDSFFLEYVVS 103 (126)
Q Consensus 49 ~VYVGe---~~RfvVpv~yL--~hP~F~~LL~~aeeEfG~~~~G~L~IP-C~~~~Fe~vl~ 103 (126)
.+.||+ .++|-+.-..| ..|.|+.++...-.|- . ..|.|| .+...|+.+|.
T Consensus 12 ~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~ 68 (109)
T 2vkp_A 12 HFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLK 68 (109)
T ss_dssp EEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHH
T ss_pred EEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHH
Confidence 344555 38888888887 6899999997543332 2 678887 58899999884
No 5
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=47.50 E-value=9.4 Score=32.64 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=30.4
Q ss_pred CccCCCCceEEEeec-----------CeeeeeccCCcccHHHHHHHHhhhhhcCC
Q 046415 40 PAVADKDHFVACAMD-----------NRRLVIPVPYLYSDIFRELLRMSEEEFGL 83 (126)
Q Consensus 40 ~~~vpkG~~~VYVGe-----------~~RfvVpv~yL~hP~F~~LL~~aeeEfG~ 83 (126)
+...+++++=+.|-| ++|-.-=+. +.||.||+.|.+.+++.|+
T Consensus 401 ~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 401 PVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred CcccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 445688887777643 244443344 8999999999998888774
No 6
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=37.55 E-value=9.3 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=18.3
Q ss_pred CCcccHHHHHHHHhhhhhcC
Q 046415 63 PYLYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEfG 82 (126)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 57999999999999999983
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=35.55 E-value=28 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=28.5
Q ss_pred eEEEeecCeeeeeccCCcccHHHHHHHHhhhhhcCCCC-CCcE
Q 046415 48 FVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPK-DGLI 89 (126)
Q Consensus 48 ~~VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~-~G~L 89 (126)
+.|.-.+.+|+.|++. -.-.+.++|++|=+.|||+. +..|
T Consensus 12 v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 12 VSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp EEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred EEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCChhhCeE
Confidence 4444446899999983 34467889999999999974 3444
No 8
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=34.36 E-value=8.2 Score=24.96 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHhhhhhc
Q 046415 63 PYLYSDIFRELLRMSEEEF 81 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEf 81 (126)
.||++-.|++++.|+.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5799999999999999998
No 9
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=34.14 E-value=11 Score=25.57 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.5
Q ss_pred CCcccHHHHHHHHhhhhhcC
Q 046415 63 PYLYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEfG 82 (126)
.||++-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 58999999999999999984
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=32.97 E-value=5.4 Score=27.45 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=10.1
Q ss_pred CCcccHHHHHHHH
Q 046415 63 PYLYSDIFRELLR 75 (126)
Q Consensus 63 ~yL~hP~F~~LL~ 75 (126)
.|||||.|.-|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 5899999976644
No 11
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=32.95 E-value=21 Score=30.01 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=26.6
Q ss_pred ccCCCCceEEEeecC-----------eeeeeccCCcccHHHHHHHHh-hhhhcC
Q 046415 41 AVADKDHFVACAMDN-----------RRLVIPVPYLYSDIFRELLRM-SEEEFG 82 (126)
Q Consensus 41 ~~vpkG~~~VYVGe~-----------~RfvVpv~yL~hP~F~~LL~~-aeeEfG 82 (126)
...++..+-++|-|. +|..-=+. +.||.||+.|.+ |++.||
T Consensus 382 v~~~~~~v~~vVTE~Gva~L~G~~~~Era~~li~-iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 382 VTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIA-IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp EEECTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHHHC
T ss_pred ceeCccceeEEEcccEEEECCCCCHHHHHHHHhc-CCCCCcHHHHHHHHHHhhC
Confidence 556777777777542 34332235 999999997765 445565
No 12
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=32.24 E-value=79 Score=20.94 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=38.9
Q ss_pred CceEEEeecCeeeeeccCCcc-cH--HHHHHHHhhhhhcC--CCCCCcEEecCcHHHHHHHHhhc
Q 046415 46 DHFVACAMDNRRLVIPVPYLY-SD--IFRELLRMSEEEFG--LPKDGLIMFPCDSFFLEYVVSTS 105 (126)
Q Consensus 46 G~~~VYVGe~~RfvVpv~yL~-hP--~F~~LL~~aeeEfG--~~~~G~L~IPC~~~~Fe~vl~~~ 105 (126)
..+.+.|| +.+|.+..+-|. +| .|..|.... .++. .+.+|.+-|..+...|+++|.=.
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~l 68 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYL 68 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHH
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHh
Confidence 45667787 678888766554 33 566665422 1232 33678999999999999999433
No 13
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=31.75 E-value=10 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.4
Q ss_pred CCcccHHHHHHHHhhhhhcC
Q 046415 63 PYLYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEfG 82 (126)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 57999999999999999984
No 14
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=30.60 E-value=4.8 Score=31.99 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=18.6
Q ss_pred CccCCCCceEEEeecCeeeeeccCCcccHHH
Q 046415 40 PAVADKDHFVACAMDNRRLVIPVPYLYSDIF 70 (126)
Q Consensus 40 ~~~vpkG~~~VYVGe~~RfvVpv~yL~hP~F 70 (126)
+..+|+||+|+.-. -+=.-|=-.+|+||.|
T Consensus 207 sl~AP~GHLP~~~~-lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ-LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC-TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc-cccHHHHHHHHcCccc
Confidence 44689999998642 1112233456888876
No 15
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=30.18 E-value=77 Score=20.36 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=31.6
Q ss_pred CeeeeeccCCc--ccHHHHHHHHhhhhhcCCCCCCcEEec---CcHHHHHHHHh
Q 046415 55 NRRLVIPVPYL--YSDIFRELLRMSEEEFGLPKDGLIMFP---CDSFFLEYVVS 103 (126)
Q Consensus 55 ~~RfvVpv~yL--~hP~F~~LL~~aeeEfG~~~~G~L~IP---C~~~~Fe~vl~ 103 (126)
.++|-+.-..| ..|.|+.++... .++.|.|+ .+...|+.+|.
T Consensus 31 ~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~ 77 (116)
T 2vpk_A 31 EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLE 77 (116)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHH
T ss_pred CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHH
Confidence 45677766666 679999998754 35678887 68899999883
No 16
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=27.41 E-value=81 Score=20.59 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=34.0
Q ss_pred CeeeeeccCCc--ccHHHHHHHHhhhhhcCCCCCCcEEe-c-CcHHHHHHHHh
Q 046415 55 NRRLVIPVPYL--YSDIFRELLRMSEEEFGLPKDGLIMF-P-CDSFFLEYVVS 103 (126)
Q Consensus 55 ~~RfvVpv~yL--~hP~F~~LL~~aeeEfG~~~~G~L~I-P-C~~~~Fe~vl~ 103 (126)
.++|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.+|.
T Consensus 38 ~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~ 86 (127)
T 1r29_A 38 REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLD 86 (127)
T ss_dssp TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHH
T ss_pred CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHH
Confidence 46777776666 689999999865544 4678999 4 67899998884
No 17
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=25.69 E-value=20 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=14.2
Q ss_pred cccHHHHHHHHhhhhhc
Q 046415 65 LYSDIFRELLRMSEEEF 81 (126)
Q Consensus 65 L~hP~F~~LL~~aeeEf 81 (126)
|+.-.|++++.|+.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56678999999999887
No 18
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=25.57 E-value=10 Score=30.02 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=20.1
Q ss_pred CccCCCCceEEEeec-CeeeeeccCCcccHHHH
Q 046415 40 PAVADKDHFVACAMD-NRRLVIPVPYLYSDIFR 71 (126)
Q Consensus 40 ~~~vpkG~~~VYVGe-~~RfvVpv~yL~hP~F~ 71 (126)
+..+|+||+|+.-.= +-| |=-..|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 446899999986531 222 445678899884
No 19
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=23.78 E-value=28 Score=20.39 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=14.7
Q ss_pred CCcccHHHHHHHHh----hhhhcC
Q 046415 63 PYLYSDIFRELLRM----SEEEFG 82 (126)
Q Consensus 63 ~yL~hP~F~~LL~~----aeeEfG 82 (126)
..|+.|-|+.||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 45899999999974 345554
No 20
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.52 E-value=44 Score=18.21 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.6
Q ss_pred HHHHHHhhhhhcC
Q 046415 70 FRELLRMSEEEFG 82 (126)
Q Consensus 70 F~~LL~~aeeEfG 82 (126)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 21
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=23.19 E-value=57 Score=22.50 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=23.4
Q ss_pred eEEEeecCeeeeeccCCcccHHHHHHHHhhhhh
Q 046415 48 FVACAMDNRRLVIPVPYLYSDIFRELLRMSEEE 80 (126)
Q Consensus 48 ~~VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeE 80 (126)
+-+|+||.+|+- +.|+...|++.+.+.
T Consensus 16 Lriy~~E~~~~~------g~pL~~~Iv~~~~~~ 42 (114)
T 1o51_A 16 LKIYLGEKDKHS------GKPLFEYLVKRAYEL 42 (114)
T ss_dssp EEEEEETTCEET------TEEHHHHHHHHHHHT
T ss_pred EEEEECCccccC------CeEHHHHHHHHHHHC
Confidence 578999988874 789999999999886
No 22
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=23.03 E-value=1.4e+02 Score=19.61 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=32.1
Q ss_pred cCeeeeeccCCcc--cHHHHHHHHhhhhhcCCCCCCcEEec--CcHHHHHHHHh
Q 046415 54 DNRRLVIPVPYLY--SDIFRELLRMSEEEFGLPKDGLIMFP--CDSFFLEYVVS 103 (126)
Q Consensus 54 e~~RfvVpv~yL~--hP~F~~LL~~aeeEfG~~~~G~L~IP--C~~~~Fe~vl~ 103 (126)
+.++|-+.-..|. .|.|++++... ....|.|| .+...|+.+|.
T Consensus 41 ~~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~ 87 (129)
T 3ga1_A 41 KGHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILS 87 (129)
T ss_dssp TTEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHH
T ss_pred CCEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHH
Confidence 3456666655554 79999999865 45688996 88999999883
No 23
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=22.46 E-value=11 Score=26.87 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=11.3
Q ss_pred CccCCCCceEEEeecCeeeeeccCCcccHHHHHHHHh
Q 046415 40 PAVADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRM 76 (126)
Q Consensus 40 ~~~vpkG~~~VYVGe~~RfvVpv~yL~hP~F~~LL~~ 76 (126)
+..||+|-.--= +..-.|||||.|.-|-.-
T Consensus 12 ~~~~~~~~~~~~-------ms~E~YLNHPTFGLLyrV 41 (112)
T 3n5b_B 12 SGLVPRGSHMNP-------ENSETYINHPTWGLLYRI 41 (112)
T ss_dssp ---------------------CCCEEEETTTEEEEEE
T ss_pred CCcccCCccCCC-------cchhhhccCCccchheee
Confidence 456777753211 122339999999876543
No 24
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=20.96 E-value=70 Score=23.80 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=28.7
Q ss_pred cCCCCceEEEeecCeeeeeccCCcccHHHHHHHHhhhhhcCCCC-CCcEEec--CcH
Q 046415 42 VADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPK-DGLIMFP--CDS 95 (126)
Q Consensus 42 ~vpkG~~~VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IP--C~~ 95 (126)
+.+.---++.|.|+.-++ ++|-.+.-+..++.-|+||||.. +|.|.|- |++
T Consensus 47 dt~~v~A~llvSDgthsv---rclvTrEA~~~sdwEEk~Fgfr~~egrlllLqd~~V 100 (161)
T 2i46_A 47 DTSDVGATLLVSDGTHSV---RCLVTREALDTSDWEEKEFGFRGTEGRLLLLQDCGV 100 (161)
T ss_dssp CCTTSCEEEEEECSSCEE---EEEECHHHHHTSCCTTSCSSCTTCTTEEEEEEEEEE
T ss_pred CCCCceeEEEEcCCceEE---EEEecHHHhhhhhhhhhhcCcccccceEEEEecCCE
Confidence 334444455577763332 23334444445555578999984 8887653 553
Done!