Query 046415
Match_columns 126
No_of_seqs 114 out of 654
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 20:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046415.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046415hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3xa2 a.261.1.1 (A:88-235) G 62.9 0.31 2.3E-05 34.4 -2.0 30 40-70 117-146 (148)
2 d1unda_ a.14.1.1 (A:) Advillin 62.2 1.1 8.1E-05 24.6 0.7 18 64-81 1-18 (36)
3 d1y6ia2 a.261.1.1 (A:83-233) M 59.4 0.58 4.2E-05 33.1 -1.1 31 40-72 117-148 (151)
4 d2bkfa1 d.15.2.2 (A:1-85) Next 58.8 6.1 0.00044 25.1 4.1 48 51-100 11-67 (85)
5 d2r85a1 c.30.1.8 (A:1-99) 5-fo 50.0 0.51 3.7E-05 31.4 -2.5 23 40-62 64-88 (99)
6 d2pbza1 c.30.1.8 (A:4-99) 5-fo 40.0 0.87 6.4E-05 30.1 -2.6 23 40-62 59-83 (96)
7 d1yu5x1 a.14.1.1 (X:10-76) Vil 38.5 4.1 0.0003 24.9 0.6 19 63-81 31-49 (67)
8 d1o51a_ d.58.5.4 (A:) Hypothet 34.6 17 0.0013 23.0 3.3 27 48-80 6-32 (102)
9 d1ujsa_ a.14.1.1 (A:) Actin-bi 32.3 6 0.00044 25.4 0.7 20 63-82 46-65 (88)
10 d1tjya_ c.93.1.1 (A:) AI-2 rec 31.9 19 0.0014 24.3 3.4 32 53-84 1-35 (316)
11 d1qzpa_ a.14.1.1 (A:) Dematin 31.5 4.6 0.00033 24.8 -0.1 19 63-81 32-50 (68)
12 d1yu8x1 a.14.1.1 (X:42-76) Vil 30.1 7.1 0.00052 21.0 0.6 17 65-81 1-17 (35)
13 d1fc4a_ c.67.1.4 (A:) 2-amino- 28.9 31 0.0022 25.8 4.5 36 50-85 39-79 (401)
14 d2r7ka1 c.30.1.8 (A:1-123) 5-f 25.8 1.4 0.0001 30.2 -3.6 23 40-62 87-112 (123)
15 d1qusa_ d.2.1.6 (A:) 36 kDa so 22.1 24 0.0017 26.9 2.6 24 62-85 13-36 (322)
16 d1mlaa1 c.19.1.1 (A:3-127,A:19 21.7 17 0.0012 25.6 1.5 21 64-84 21-41 (235)
17 d1zavu1 a.108.1.1 (U:1-30) Rib 20.4 30 0.0022 17.7 2.0 18 65-82 13-30 (30)
No 1
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=62.91 E-value=0.31 Score=34.42 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=19.4
Q ss_pred CccCCCCceEEEeecCeeeeeccCCcccHHH
Q 046415 40 PAVADKDHFVACAMDNRRLVIPVPYLYSDIF 70 (126)
Q Consensus 40 ~~~vpkG~~~VYVGe~~RfvVpv~yL~hP~F 70 (126)
+..+|+||+|+. +..+-+-|=-.+|+||.|
T Consensus 117 ~l~AP~GHLP~~-~~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 117 DLSAPRGHLPLT-NQLRGVQVLNALLNHPAW 146 (148)
T ss_dssp STTSCTTCCSCC-CCTTCSHHHHHHHTCGGG
T ss_pred cCCCCCCCCCcC-CccchHHHHHHHhcCccc
Confidence 346899999975 333444444556778765
No 2
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.17 E-value=1.1 Score=24.57 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.9
Q ss_pred CcccHHHHHHHHhhhhhc
Q 046415 64 YLYSDIFRELLRMSEEEF 81 (126)
Q Consensus 64 yL~hP~F~~LL~~aeeEf 81 (126)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 799999999999999998
No 3
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=59.39 E-value=0.58 Score=33.07 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=19.9
Q ss_pred CccCCCCceEEEeecC-eeeeeccCCcccHHHHH
Q 046415 40 PAVADKDHFVACAMDN-RRLVIPVPYLYSDIFRE 72 (126)
Q Consensus 40 ~~~vpkG~~~VYVGe~-~RfvVpv~yL~hP~F~~ 72 (126)
+..+|+||+|+...-+ -| +--..|+||.|.+
T Consensus 117 ~l~AP~GHLP~~~~lrG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 117 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHHH
T ss_pred cCCCCCCCCCccchhhhHH--HHHHHHcCcchhh
Confidence 3468999999864321 12 2234789998864
No 4
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.85 E-value=6.1 Score=25.11 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=35.5
Q ss_pred EeecCeeeeeccCCcccHHHHHHHHhhhhhcCCC--------C-CCcEEecCcHHHHHH
Q 046415 51 CAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLP--------K-DGLIMFPCDSFFLEY 100 (126)
Q Consensus 51 YVGe~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~--------~-~G~L~IPC~~~~Fe~ 100 (126)
|-||..||.++.. +++.|.+|..+-+.-||++ . +.-++|.|++++=|.
T Consensus 11 f~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~ 67 (85)
T d2bkfa1 11 FKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 67 (85)
T ss_dssp ETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred ECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHH
Confidence 4467899998633 4678999999999888842 2 345889999876655
No 5
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=50.01 E-value=0.51 Score=31.43 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=17.7
Q ss_pred CccCCCCceEEEee-cC-eeeeecc
Q 046415 40 PAVADKDHFVACAM-DN-RRLVIPV 62 (126)
Q Consensus 40 ~~~vpkG~~~VYVG-e~-~RfvVpv 62 (126)
..-||.|.|++|+| |+ +.|.||+
T Consensus 64 ~I~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 64 AVVVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp EEECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EEEecCCCEEEEEcHHHHhcCCCCc
Confidence 45689999999999 32 4487775
No 6
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=40.02 E-value=0.87 Score=30.12 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=17.5
Q ss_pred CccCCCCceEEEee-c-Ceeeeecc
Q 046415 40 PAVADKDHFVACAM-D-NRRLVIPV 62 (126)
Q Consensus 40 ~~~vpkG~~~VYVG-e-~~RfvVpv 62 (126)
..-||.|.|++|+| | -+.+.||+
T Consensus 59 aI~IPhgSfv~Y~G~~~ie~~~VP~ 83 (96)
T d2pbza1 59 GIVVPHGSFVAYLGIEAIEKAKARF 83 (96)
T ss_dssp SBCCCBTTHHHHSCHHHHHTCCSCC
T ss_pred eEEEcCCCEEEEecHHHHhhCCCCc
Confidence 56799999999999 3 24566664
No 7
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=38.51 E-value=4.1 Score=24.94 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHhhhhhc
Q 046415 63 PYLYSDIFRELLRMSEEEF 81 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEf 81 (126)
.||++-.|++++.|+.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5799999999999999998
No 8
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=34.55 E-value=17 Score=22.96 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=23.2
Q ss_pred eEEEeecCeeeeeccCCcccHHHHHHHHhhhhh
Q 046415 48 FVACAMDNRRLVIPVPYLYSDIFRELLRMSEEE 80 (126)
Q Consensus 48 ~~VYVGe~~RfvVpv~yL~hP~F~~LL~~aeeE 80 (126)
+-+|+++..|+ =+.|+...|++.+.|.
T Consensus 6 LrIy~~e~~~~------~g~pl~~~iv~~ar~~ 32 (102)
T d1o51a_ 6 LKIYLGEKDKH------SGKPLFEYLVKRAYEL 32 (102)
T ss_dssp EEEEEETTCEE------TTEEHHHHHHHHHHHT
T ss_pred EEEEEcchhcC------CceEHHHHHHHHHHHC
Confidence 56899998876 4899999999999975
No 9
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.29 E-value=6 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.3
Q ss_pred CCcccHHHHHHHHhhhhhcC
Q 046415 63 PYLYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEfG 82 (126)
.||++-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 47999999999999999984
No 10
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=31.85 E-value=19 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=22.7
Q ss_pred ecCeeeeeccCCcccHHHHHHHHhh---hhhcCCC
Q 046415 53 MDNRRLVIPVPYLYSDIFRELLRMS---EEEFGLP 84 (126)
Q Consensus 53 Ge~~RfvVpv~yL~hP~F~~LL~~a---eeEfG~~ 84 (126)
|..+|..+=+..+++|.|..+.+-+ .+|+|++
T Consensus 1 G~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 1 GSAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 3445666667788999999886555 4577764
No 11
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.53 E-value=4.6 Score=24.81 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHhhhhhc
Q 046415 63 PYLYSDIFRELLRMSEEEF 81 (126)
Q Consensus 63 ~yL~hP~F~~LL~~aeeEf 81 (126)
.||++-.|++++.|+.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 5799999999999999998
No 12
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.14 E-value=7.1 Score=20.96 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=14.5
Q ss_pred cccHHHHHHHHhhhhhc
Q 046415 65 LYSDIFRELLRMSEEEF 81 (126)
Q Consensus 65 L~hP~F~~LL~~aeeEf 81 (126)
|+.-.|++++.|+.+||
T Consensus 1 Lsd~dF~~vfgmsr~eF 17 (35)
T d1yu8x1 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp SCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56778999999999987
No 13
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Probab=28.92 E-value=31 Score=25.84 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=27.2
Q ss_pred EEeecCeeee--eccCCcc---cHHHHHHHHhhhhhcCCCC
Q 046415 50 ACAMDNRRLV--IPVPYLY---SDIFRELLRMSEEEFGLPK 85 (126)
Q Consensus 50 VYVGe~~Rfv--Vpv~yL~---hP~F~~LL~~aeeEfG~~~ 85 (126)
|.+.|.++|+ ..-+||+ ||.+++....+-+.||...
T Consensus 39 v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~ 79 (401)
T d1fc4a_ 39 ITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGM 79 (401)
T ss_dssp EEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCC
T ss_pred EEecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCc
Confidence 3455677776 3446763 9999999999999999764
No 14
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=25.82 E-value=1.4 Score=30.22 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=17.9
Q ss_pred CccCCCCceEEEee-cC--eeeeecc
Q 046415 40 PAVADKDHFVACAM-DN--RRLVIPV 62 (126)
Q Consensus 40 ~~~vpkG~~~VYVG-e~--~RfvVpv 62 (126)
..-||.|.|++|+| |+ +.|.||+
T Consensus 87 ~I~IPhgSfv~Y~G~~~ie~~~~VP~ 112 (123)
T d2r7ka1 87 SIVVPHGSFIAYCGLDNVENSFLVPM 112 (123)
T ss_dssp EEECCBHHHHHHHCHHHHHHTCCSCB
T ss_pred EEEecCCCeeeeecHHHHHhcCCCCe
Confidence 45689999999999 42 4688885
No 15
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=22.10 E-value=24 Score=26.88 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=21.6
Q ss_pred cCCcccHHHHHHHHhhhhhcCCCC
Q 046415 62 VPYLYSDIFRELLRMSEEEFGLPK 85 (126)
Q Consensus 62 v~yL~hP~F~~LL~~aeeEfG~~~ 85 (126)
-+|.+||-++.++++..+++||+.
T Consensus 13 ~dya~~p~v~~Fi~~la~~~G~s~ 36 (322)
T d1qusa_ 13 GDFANNPNAQQFIDKMVNKHGFDR 36 (322)
T ss_dssp STTTTCHHHHHHHHHHHHHHCCCH
T ss_pred CCcccCHHHHHHHHHHHHHhCCCH
Confidence 478999999999999999999974
No 16
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]}
Probab=21.74 E-value=17 Score=25.55 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.1
Q ss_pred CcccHHHHHHHHhhhhhcCCC
Q 046415 64 YLYSDIFRELLRMSEEEFGLP 84 (126)
Q Consensus 64 yL~hP~F~~LL~~aeeEfG~~ 84 (126)
|-++|.|++.++++.+.+|++
T Consensus 21 ~~~~p~~r~~~~~~~~~l~~~ 41 (235)
T d1mlaa1 21 AASYPIVEETFAEASAALGYD 41 (235)
T ss_dssp HHHCHHHHHHHHHHHHHHTSC
T ss_pred HHCCHHHHHHHHHHHHHhCCC
Confidence 357899999999999999864
No 17
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.42 E-value=30 Score=17.70 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=14.4
Q ss_pred cccHHHHHHHHhhhhhcC
Q 046415 65 LYSDIFRELLRMSEEEFG 82 (126)
Q Consensus 65 L~hP~F~~LL~~aeeEfG 82 (126)
|.-....+|.++.|+.||
T Consensus 13 ltvaelaelvk~ledkfg 30 (30)
T d1zavu1 13 LTVSELAELVKKLEDKFG 30 (30)
T ss_dssp SBHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHhhcC
Confidence 444567899999999997
Done!