BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046416
         (386 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 60/74 (81%)

Query: 87  CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRS 146
           CQV+ C  D+ +AK Y+ RHKVC +H+K+  V ++GL QRFCQQCSRFH L EFD+ KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70

Query: 147 CRRRLAGHNERRRK 160
           CRRRLAGHNERRRK
Sbjct: 71  CRRRLAGHNERRRK 84


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 86  RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKR 145
           RCQV  C+ D+S+ K Y+ RH+VC   + +  V + G  +R+CQQC +FH LP+FD+GKR
Sbjct: 5   RCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKR 64

Query: 146 SCRRRLAGHNERR-RKP 161
           SCRR+L  HN RR RKP
Sbjct: 65  SCRRKLERHNNRRKRKP 81


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 87  CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD 141
           CQV+ C  DLS  K Y+ RHKVC +HSK+    V G+ QRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
 pdb|3DH4|B Chain B, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
 pdb|3DH4|C Chain C, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
 pdb|3DH4|D Chain D, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND
           GALACTOSE FROM Vibrio Parahaemolyticus
          Length = 530

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 171 YGRLSSSVIENSSQG-----GGFLIDFSAYQMVGGRDGWPVTSVSKQV 213
           YG LS+ V  +  Q      GGF+  + A   +GG DGW    VSK V
Sbjct: 150 YGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGW-FAGVSKMV 196


>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt
          Length = 593

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 171 YGRLSSSVIENSSQG-----GGFLIDFSAYQMVGGRDGWPVTSVSKQV 213
           YG LS+ V  +  Q      GGF+  + A   +GG DGW    VSK V
Sbjct: 179 YGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGW-FAGVSKMV 225


>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt
          Length = 593

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 171 YGRLSSSVIENSSQG-----GGFLIDFSAYQMVGGRDGWPVTSVSKQV 213
           YG LS+ V  +  Q      GGF+  + A   +GG DGW    VSK V
Sbjct: 179 YGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGW-FAGVSKMV 225


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,411,122
Number of Sequences: 62578
Number of extensions: 468528
Number of successful extensions: 882
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 8
length of query: 386
length of database: 14,973,337
effective HSP length: 101
effective length of query: 285
effective length of database: 8,652,959
effective search space: 2466093315
effective search space used: 2466093315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)