Query 046416
Match_columns 386
No_of_seqs 178 out of 304
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 1.3E-39 2.7E-44 263.5 -3.3 78 86-163 1-78 (79)
2 PF14901 Jiv90: Cleavage induc 43.1 12 0.00026 32.2 1.1 15 124-138 26-40 (94)
3 PRK00241 nudC NADH pyrophospha 29.5 17 0.00038 35.3 -0.1 36 99-135 92-127 (256)
4 PF12108 SF3a60_bindingd: Spli 28.6 19 0.00041 24.7 0.0 12 95-106 15-26 (28)
5 PRK06424 transcription factor; 25.9 40 0.00086 30.6 1.5 25 116-140 14-39 (144)
6 PF14776 UNC-79: Cation-channe 21.6 63 0.0014 35.3 2.3 28 106-133 262-298 (525)
7 PTZ00303 phosphatidylinositol 20.6 1E+02 0.0022 35.9 3.7 46 85-132 461-526 (1374)
8 PF09297 zf-NADH-PPase: NADH p 19.3 27 0.00059 23.6 -0.6 29 105-134 2-30 (32)
9 PF11680 DUF3276: Protein of u 19.2 46 0.001 30.0 0.6 16 29-44 15-30 (124)
10 TIGR00270 conserved hypothetic 19.0 79 0.0017 28.9 2.0 23 114-136 13-35 (154)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=1.3e-39 Score=263.51 Aligned_cols=78 Identities=67% Similarity=1.169 Sum_probs=63.3
Q ss_pred ceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCCCC
Q 046416 86 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTS 163 (386)
Q Consensus 86 ~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~ 163 (386)
+||||||++||+.+|.||+||||||.|+|||+|+++|+++||||||+|||+|+|||+.|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=43.11 E-value=12 Score=32.18 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=12.6
Q ss_pred ehHHHHhhhccCCCc
Q 046416 124 EQRFCQQCSRFHQLP 138 (386)
Q Consensus 124 ~qRFCQQCsrFH~L~ 138 (386)
.-|+||+|..+|+..
T Consensus 26 ~AR~C~~C~~~H~Ak 40 (94)
T PF14901_consen 26 AARYCQDCKIRHPAK 40 (94)
T ss_pred hhHhHHHhhhhcccc
Confidence 369999999999943
No 3
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=29.48 E-value=17 Score=35.28 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=27.0
Q ss_pred chhhhhcccccccccCCCEEEECCeehHHHHhhhccC
Q 046416 99 AKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFH 135 (386)
Q Consensus 99 ~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH 135 (386)
+..+|++||-|..+-....+. .+...|.|..|++.|
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~ 127 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERY 127 (256)
T ss_pred HHHHhhcCccccccCCCCeec-CCceeEECCCCCCEE
Confidence 347899999999887765554 455568899998644
No 4
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=28.64 E-value=19 Score=24.75 Aligned_cols=12 Identities=33% Similarity=0.467 Sum_probs=8.4
Q ss_pred hhhcchhhhhcc
Q 046416 95 DLSDAKAYYSRH 106 (386)
Q Consensus 95 dLs~~k~Y~rRh 106 (386)
.|..+|+||+||
T Consensus 15 rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 15 RLKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHhC
Confidence 466778888887
No 5
>PRK06424 transcription factor; Provisional
Probab=25.89 E-value=40 Score=30.61 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=20.3
Q ss_pred CEEEECCeehHHHHhhhccC-CCccc
Q 046416 116 PVVTVAGLEQRFCQQCSRFH-QLPEF 140 (386)
Q Consensus 116 ~~V~v~G~~qRFCQQCsrFH-~L~eF 140 (386)
-.|+|+|.+.+-|..|.+|= ++.++
T Consensus 14 ~~v~ieg~~l~vC~~Ca~~G~~v~~~ 39 (144)
T PRK06424 14 TKVMIDGAILNVCDDCAKFGTPVIEH 39 (144)
T ss_pred eEEEEcCeeeehhHHHHHcCCccccc
Confidence 47999999999999999994 34443
No 6
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=21.61 E-value=63 Score=35.26 Aligned_cols=28 Identities=43% Similarity=0.686 Sum_probs=22.4
Q ss_pred ccccccccCCCEEEE---------CCeehHHHHhhhc
Q 046416 106 HKVCGMHSKSPVVTV---------AGLEQRFCQQCSR 133 (386)
Q Consensus 106 hrVCe~H~ka~~V~v---------~G~~qRFCQQCsr 133 (386)
.|-|.-+.|..+|+- +.+..|+||||..
T Consensus 262 nK~C~S~~k~AvvtCFS~eCt~~~gn~PiRlC~~Ch~ 298 (525)
T PF14776_consen 262 NKNCRSSDKSAVVTCFSTECTSYNGNRPIRLCQQCHS 298 (525)
T ss_pred CCCCcCCCCCeEEEEechhhccccCCCcchhHHHHhh
Confidence 466777888888774 6788999999975
No 7
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.64 E-value=1e+02 Score=35.87 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=30.7
Q ss_pred CceeeCCCcchhhc------chhhhhcc---cccccccCCC------EEEEC-----CeehHHHHhhh
Q 046416 85 PRCQVEGCKVDLSD------AKAYYSRH---KVCGMHSKSP------VVTVA-----GLEQRFCQQCS 132 (386)
Q Consensus 85 ~~CqVeGC~~dLs~------~k~Y~rRh---rVCe~H~ka~------~V~v~-----G~~qRFCQQCs 132 (386)
..|+. |+..... .+.+|+|+ .+|..++.-- .|... +.+.|-|+-|-
T Consensus 461 dtC~~--C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CY 526 (1374)
T PTZ00303 461 DSCPS--CGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCY 526 (1374)
T ss_pred CcccC--cCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHH
Confidence 46888 8888754 36788887 5888887321 13333 34558999996
No 8
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=19.28 E-value=27 Score=23.59 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=15.7
Q ss_pred cccccccccCCCEEEECCeehHHHHhhhcc
Q 046416 105 RHKVCGMHSKSPVVTVAGLEQRFCQQCSRF 134 (386)
Q Consensus 105 RhrVCe~H~ka~~V~v~G~~qRFCQQCsrF 134 (386)
+||-|.. .-+|++.+.+...|-|+.|+..
T Consensus 2 ~~rfC~~-CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 2 NHRFCGR-CGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TTSB-TT-T--BEEE-SSSS-EEESSSS-E
T ss_pred CCcccCc-CCccccCCCCcCEeECCCCcCE
Confidence 5666654 3466777777777888888754
No 9
>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function. ; PDB: 3NM7_C 3N8B_A.
Probab=19.24 E-value=46 Score=29.97 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=11.3
Q ss_pred cccccCCeeeeccCCC
Q 046416 29 NGLKFGKKIYFEDVGT 44 (386)
Q Consensus 29 ~gLk~G~r~yfed~~~ 44 (386)
..|+.||||||=|+-.
T Consensus 15 k~v~agkRtYFFDVK~ 30 (124)
T PF11680_consen 15 KVVKAGKRTYFFDVKE 30 (124)
T ss_dssp EE--SSSEEEEEEEEE
T ss_pred eeeecCCeeEEEEeec
Confidence 4689999999988743
No 10
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=18.96 E-value=79 Score=28.90 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=19.6
Q ss_pred CCCEEEECCeehHHHHhhhccCC
Q 046416 114 KSPVVTVAGLEQRFCQQCSRFHQ 136 (386)
Q Consensus 114 ka~~V~v~G~~qRFCQQCsrFH~ 136 (386)
+.-.|.|+|.+..-|..|.+|=.
T Consensus 13 ~~~~v~iega~l~vC~~C~k~G~ 35 (154)
T TIGR00270 13 KGFKIVIEGSEMTVCGECRKFGK 35 (154)
T ss_pred CCeEEEEcCeEEehhhhHHhcCC
Confidence 44589999999999999999833
Done!